##maf version=1 scoring=roast.v3.3 a score=3620.000000 s hg38.chr17_GL383564v2_alt 0 3 + 133151 GAT s panTro5.chr17 16193858 3 + 83181570 GAT i panTro5.chr17 N 0 C 0 s panPan2.chr17 16101247 3 + 83442489 GAT i panPan2.chr17 N 0 C 0 s gorGor5.CYUI01015385v1 3936364 3 + 4267968 GAT i gorGor5.CYUI01015385v1 N 0 C 0 s nomLeu3.chrUn_GL397460_1 1914625 3 - 2193130 GAT i nomLeu3.chrUn_GL397460_1 N 0 C 0 s macFas5.chr16 27901505 3 - 80997621 GAC i macFas5.chr16 N 0 C 0 a score=22445.000000 s hg38.chr17_GL383564v2_alt 3 5 + 133151 CATCC s panTro5.chr17 16193861 5 + 83181570 CATCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101250 5 + 83442489 CATCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936367 5 + 4267968 CATCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914628 5 - 2193130 CATCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29988906 5 - 77216781 CATCT i rheMac8.chr16 N 0 C 0 s macFas5.chr16 27901508 5 - 80997621 CATCT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1844605 5 - 8458610 CATCT i cerAty1.NW_012006043v1 N 0 C 0 s chlSab2.chr16 64801107 5 + 75148670 CATCT i chlSab2.chr16 N 0 C 0 s manLeu1.NW_012106252v1 2012859 5 + 4244037 CATCT i manLeu1.NW_012106252v1 N 0 C 0 s colAng1.NW_012122154v1 2051693 5 + 4569836 CATCT i colAng1.NW_012122154v1 N 0 C 0 a score=12606.000000 s hg38.chr17_GL383564v2_alt 8 2 + 133151 AC s panTro5.chr17 16193866 2 + 83181570 AC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101255 2 + 83442489 AC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936372 2 + 4267968 AC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914633 2 - 2193130 AC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29988911 2 - 77216781 AC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901513 2 - 80997621 AC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955002 2 + 10377808 AC i macNem1.NW_012014910v1 N 0 C 0 s cerAty1.NW_012006043v1 1844610 2 - 8458610 AC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801112 2 + 75148670 AC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2012864 2 + 4244037 AC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2051698 2 + 4569836 AC i colAng1.NW_012122154v1 C 0 C 0 a score=1403642.000000 s hg38.chr17_GL383564v2_alt 10 152 + 133151 AGCTTAACACCCATAGGAAATGGTCCCCTGAGAGACACAGAGGAATGGATTGAGGGGACATTGAGGGGAAATCC-ATAGGCTGAA-GGAGGCACAAAACAGCAGAGATGGCTCCTGGCCTAACACCCCAAGGACTTCTATAGGGTACCCTTATA s panTro5.chr17 16193868 153 + 83181570 AGCCTAACACCCATAGGAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCCCATAGGCTGAA-GGAGGCACAAAACAGCAGAGATGGTTCCTGGCCTAACACCCCAAGGACTTCTATAGGGTACACTTATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101257 153 + 83442489 AGCCTAACACCCATAGGAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCCCATAGGCTGAA-GGAGGCACAAAAGAGCAGAGATGGTTCCTGGCCTAACACCCCAAGGACTTCTATAGGGTACACTTATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936374 152 + 4267968 AGCTTAACACCCATAGGAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCC-ATAGGCTGAA-GGAGGCACAAAACAGCAGAGATGGTTCCTGGCCTAACACCCCAAGGACTTCTATAGGGTacccttgta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914635 152 - 2193130 AGCTTAACACCCATAGGAAATGGTCCCCTGAAGGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCC-ATAGGCTGAA-GGAGGCACAAAACAGTAGAGATGGTTCCTGGCCTAACACCCCAAGGATTTCTATAGGGTACTCTTATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29988913 153 - 77216781 AGCTTAGCACCCATAGAAAATGGTCCCCTGAAAGACACAGAGGAATGGGCTGAGGGGACATTGAGGGGAAATCC-GTAGGCTGAAGGGGGGCACAAAACAGTAGAGATGGTTTCTGGCCTAACACACCAAGGACTTCTATAGGTTACCCTTATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901515 153 - 80997621 AGCTTAGCACCCATAGAAAATGGTCCCCTGAAAGACACAGAGGAATGGGCTGAGGGGACATTGAGGGGAAATCC-GTAGGCTGAAGGGGGGCACAAAACAGTAGAGATGGTTTCTGGCCTAACACACCAAGGACTTCTGTAGGTTACCCTTATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955004 153 + 10377808 AGCTTAGCACCCATAGAAAATGGTCCCCTGAAAGACACAGAGGAATGGGCTGAGGGGACATTGAGGGGAAATCC-GTAGGCTGAAGGGGGGCACAAAACAGTAGAGATGGTTTCTGGCCTAACACACCAAGGACTTCTATAGGTTACCCTTATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1844612 153 - 8458610 AGCTTAGCACCCATAGAAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCC-GTAGGCTGAAGGGGGGCACAAAACAGTAGAGATGGTTTCTGGCCTAACACACCAAGGACTTCTATAGGTTACCCTTATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801114 152 + 75148670 AGCTTAGCACCCATAGAAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCT-GAAGGCTGAA-GGGGGCACAAAACAGTAGAGATGGTTTCTGGCCTAACACACCAAGGACTTCTATAGGTTACCCTTATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2012866 153 + 4244037 AGCTTAGCACCCATAGAAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATGGAGGGGAAATCC-GTAGGCTGAAGGGGGGCACAAAACAGTAGAGATGGTCTCTGGCCTAACACACCAAGGACTTCTATAGGTTACCCTTATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2051700 153 + 4569836 AGCTTAACACCCATAGGAAATGGTCCCCTGAAAGACACAGAGGAATGGACTGAGGGGACATTGAGGGGAAATCC-GTAGGCTGAAGGGGGGCACAAAACAGTAGAGATGGTTTCTGGCCTAACACACCAAGGACCTCTGTAGGTTACCCTtata i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46017722 143 - 159171411 AGCTTAATGCCCGTAGGAAATGGTCCCCTGAAAGGCATAGAGGAATGGACTGA--TAATATTGAGGGGAGATCC-ACAGGCTGAA-GTGGGCACAGAACAGTAGAGATGGTTCCTGGCCTAATACCCCAAGGGTTTCTGCAGGGTAC------- i calJac3.chr5 N 0 C 0 s saiBol1.JH378271 1744289 143 + 3513951 AGCTTAACACCCATAGGAAATGGTCCCCTGAAAGGCACAGAGGAATGGACTGA--TAATATTGAGGGGAGACCC-ATAGGCTGAA-GTGGGCACAGAACAGTGGAGATAGTTCCTGGCCTAATACCCCAAGGGTTTCTACAGGGTAC------- i saiBol1.JH378271 N 0 C 0 s cebCap1.NW_016107730v1 1793837 150 + 1920343 AGCTTAATACCCATAGGCAATGGTCCCCTGAAAGGCACAGAGGAATGGACTGA--TAATATTGAGGGGAGCTCC-ATAGGCCGAA-GTGGGCACAGAACAGTGGAGATGGTTCCTGGCCTAATACCCCAAGGGTTTCTACAGGGTACCCCTATA i cebCap1.NW_016107730v1 N 0 I 65 s aotNan1.NW_018502359v1 6905581 150 - 7032639 AGCTTAATACCCATAGGAAATGGTCCCCTGAAAGGCACAGAGGAATGGACTGA--TCATATTGAGGGCAGATCC-ATAGGCTGAA-GTGGGCACAGAACAGTGGAGATGGTTCCTGGCCTAATGCCCCAAGGGTTTCTACAGGGTGCCCCTATA i aotNan1.NW_018502359v1 N 0 I 900 a score=201693.000000 s hg38.chr17_GL383564v2_alt 162 29 + 133151 TTTTTTATCCTTATACTTCTGTCtatgta s panTro5.chr17 16194021 29 + 83181570 TTTTTTATCCTTATACTTCTGTCtatgta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101410 29 + 83442489 TTTTTTATCCTTATACTTCTGTCtatgta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936526 29 + 4267968 ttttttatccttatacttctgtctatgta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914787 29 - 2193130 CTTTTTATCCTTATACTTCTGTCtaggta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29989066 29 - 77216781 CTTTTTATCCTTATACTTCTGTCtatgta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901668 29 - 80997621 CTTTTTATCCTTATACTTCTGTCtatgta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955157 29 + 10377808 CTTTTTATCCTTATACTTCTGTCtatgta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1844765 29 - 8458610 CTTTTTATCCTTACACTTCTGTCtatgta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801266 29 + 75148670 CTTTTTATCCTTATACTTCTGTCtatgta i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2013019 29 + 4244037 CTTTTTATCCTTATACTTCTGTCTATGTA i manLeu1.NW_012106252v1 C 0 M 240 s colAng1.NW_012122154v1 2051853 29 + 4569836 ccttttatccttatacttctgtctctgta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46017865 21 - 159171411 --------CCCTATACTTCTCTCtatgta i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1744432 21 + 3513951 --------CCCTATACTTCTCTCtatgta i saiBol1.JH378271 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e cebCap1.NW_016107730v1 1793987 65 + 1920343 I a score=312675.000000 s hg38.chr17_GL383564v2_alt 191 51 + 133151 agtatgtctataggattaaattcctataggcggaaattattggtcgatagt s panTro5.chr17 16194050 50 + 83181570 agtatgtctataggat-aaattcctataggcagaaattattggtcgatagt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101439 50 + 83442489 agtatgtctataggat-aaattcctataggcagaaattattggtcgatagt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936555 50 + 4267968 agtatgtctataggat-aaattcctataggcagaaattattggtcgatagt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914816 50 - 2193130 agtatgtctataggat-aaattcctataggcggaaattattggtcaatagt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29989095 50 - 77216781 agtacatctataggat-aaattcctataggtggaaattattggttgatagt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901697 50 - 80997621 agtacatctataggat-aaattcctataggtggaaattattggttgatagt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955186 50 + 10377808 agtacatctataggat-aaattcctataggtggaaattattggttgatagt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1844794 50 - 8458610 agtacgtctataggat-aaattcctatagggggaaattattggttgatagt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801295 50 + 75148670 agtacgtctataggat-aaattcctataggtggaaattattggtcgatagt i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2051882 50 + 4569836 agtacatctataggat-aaattcctataggtggaaattattggttgataat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46017886 50 - 159171411 agcacgtctataggat-aaattcctagaggtggaaattactggtcaatagg i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1744453 50 + 3513951 agcacgtctataggat-aaattcctagaggtgaaaattactggtcaatggg i saiBol1.JH378271 C 0 I 1 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e cebCap1.NW_016107730v1 1793987 65 + 1920343 I e manLeu1.NW_012106252v1 2013048 240 + 4244037 M a score=25036.000000 s hg38.chr17_GL383564v2_alt 242 8 + 133151 gtatatgt s panTro5.chr17 16194100 8 + 83181570 gtatatgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101489 8 + 83442489 gtatatgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936605 8 + 4267968 gtatatgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914866 8 - 2193130 gtatgagt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29989145 8 - 77216781 gtatgtcc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901747 8 - 80997621 gtatgtcc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955236 8 + 10377808 gtatgtcc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1844844 8 - 8458610 gtatgtcc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801345 8 + 75148670 atatgtcc i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2051932 8 + 4569836 atatgtcc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46017937 8 - 159171411 gcatttgt i calJac3.chr5 I 1 I 875 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e cebCap1.NW_016107730v1 1793987 65 + 1920343 I e saiBol1.JH378271 1744503 1 + 3513951 I e manLeu1.NW_012106252v1 2013048 240 + 4244037 M a score=274183.000000 s hg38.chr17_GL383564v2_alt 250 60 + 133151 gggcatggtggctcacacctgttatcccagcactttgggaggccgaggcgggtggatcat s panTro5.chr17 16194108 60 + 83181570 gagcacggtggctcacacctgttatcccagcactttgggaggccgaggcgggtggatcat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101497 60 + 83442489 gagcgcggtggctcacacctgttatcccagcactttgggaggccgaggcgggtggatcat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936613 60 + 4267968 gggcacggtggctcacacctgttatcccagcactttgggaggccgaggcgggtggatcat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914874 60 - 2193130 gggcacggtggttcacgcctgttatcccagcactttgggaggccaaggcgggtggatcat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29989153 60 - 77216781 gggcacggtggctcatgcctgtaatctcagcactttgggaagccgaggcaggtggatcac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901755 60 - 80997621 gggcacggtggctcatgcctgtaatctcagcactttgggaagccgaggcaggtggatcac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955244 60 + 10377808 gggcacggtggctcatgcctgtaatctcagcactttgggaagccgaggcaggtggatcac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1844852 60 - 8458610 aggcacggtggctcatgcctgtaatcccagcactttgggaagccgaggcaggtggatcac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801353 60 + 75148670 aggcacggtgactcacgcctgtaatctcagcactttgggaggccgaggcgggtagatcac i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2051940 60 + 4569836 aggcacggtggctcatgtctgtaatctcagcactttgggaagccaaggcaggtggatcac i colAng1.NW_012122154v1 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e cebCap1.NW_016107730v1 1793987 65 + 1920343 I e saiBol1.JH378271 1744503 1 + 3513951 I e calJac3.chr5 46017945 875 - 159171411 I e manLeu1.NW_012106252v1 2013048 240 + 4244037 M a score=1232291.000000 s hg38.chr17_GL383564v2_alt 310 233 + 133151 gaggtcaggagatcgagaccatccaggccaacatggtgaaacctcgtctctacaaaaaacacaaaaattagctgggcatggtggcatgtgcttgtagtcctagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagctgagatcatgccactgcatcctagcctggcaatatagtgagattccgtctc-aaaaaaaaaaaaaaaaaa s panTro5.chr17 16194168 232 + 83181570 gaggtcaggagatcgagaccatccaggccaacatggtgaaaccccgtctctacaaagaacacaaaaattagctgggcgtggtggcatgtgcctgtagtcctagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcatgccactgcatcctagcctggcaatagagtgagattctgtctc-aaaaaaaaaaaaaaaaa- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101557 227 + 83442489 gaggtcaggagatcgagaccatccaggccaacatggtgaaaccccgtctctacaaagaacacaaaaattagctgggcgtggtggcatgtgcctgtagtcctagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcatgccactgcatcctagcctggcaatagagtgagattctgtctc-aaaaaaaaaaaa------ i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936673 230 + 4267968 gaggtcaggagatcgagaccatccaggccaacatggtgaaaccccgtctctacaaaaaacacaaaaattagctgggtgtggtggcatgtgcctgtagtcctagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagccgagatcatgccactgcatcctagcctggcaatagagtgagattccatctc-aaaaaaaaaaaaaaa--- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1914934 229 - 2193130 gaggtcaggagatcgagaccatccaggccaacatggtgaaaccccgtctctacaaaaaacacaaaaattagctgagcgtggtagcatgtgcctgcagtcctagctactcaggaggctgagacaggagaattgcttgaacccgggaggtggaggttgcagtgagccgagatcataccactgcaccctagcctgacaatagagtgagattccgtctc-aaaaagaaaaaaaa---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29989213 226 - 77216781 gaggtcaggagatcgagactatcctggccaacctggtgaaaccctgtctctactaaaaatacaaaaattagctaggtatggtggtgagtgcctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagtcgagatcgtgccactgcactctagcctggcaacggagcgatattccgtctc-----aaaaaaaaaat--- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27901815 230 - 80997621 gaggtcaggagatcgagactatcctggccaacctggtgaaaccctgtctctactaaaaatacaaaaattagctaggtatggtggtgagtgcctgtagtcctagctactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagtcgagatcgtgccactgcactctagcctggcaacggagcgatattccgtctc-aaaaaaaaaaaaagt--- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955304 230 + 10377808 gaggtcaggagatcgagactatcctggccaacctggtgaaaccctgtctctactaaaaatacaaaaattagctaggtatggtggtgagtgcctgtagtcctagctactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagtcgagatcgtgccactgcactctagcctggcaacggagcgatattttgtgtc-tcaaaaaaaagaaat--- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1844912 226 - 8458610 gaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggtatggtggtgagtgcctgtagtcctagctactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagtcgagatcgtgccactgcactctagcctggcaacagagcgatattccatctc-----aaaaaaaaaat--- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801413 231 + 75148670 gaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggtatggtggtgcgtgtctgtagtcctagctacttgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagtcgagatcgtgccactgcactctagcctggcaacagagcgatattccgtctcaaaaaaaaaaaaaaat--- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2013288 230 + 4244037 gaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctaggtatggtggtgagtgcctgtagtcctagctactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagtcgagatcgtgccactgcactctagcctggcaacagagcgatattccgtctc-aaaaaaaaaaaaaat--- i manLeu1.NW_012106252v1 M 240 C 0 s colAng1.NW_012122154v1 2052000 229 + 4569836 gaggtcaggagatcgagaccatcctggccaacatggtgaaacccggtctctactaaaaatacaaaattttgctgggtgtggtggtgtgtgcctgtagtctcagctactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagcagagatagtgccactgcactctagcctggcaacagagagatattccgtctc--aaaaaaaaaaaaat--- i colAng1.NW_012122154v1 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e cebCap1.NW_016107730v1 1793987 65 + 1920343 I e saiBol1.JH378271 1744503 1 + 3513951 I e calJac3.chr5 46017945 875 - 159171411 I a score=4285808.000000 s hg38.chr17_GL383564v2_alt 543 566 + 133151 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgcacaacttattcttcccctcaacagtgtatgaaagtgcatgttttctttattttgctacaatcatgacattaatctattttgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctcttaataaaattttaggtgtacaataaattactatggactctgggtacaatgcagtacagtagatctctaggccttacacatcttgcttgactggaactttatgttcattgaacagtaactttccatttccccttttcccacagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagtatttgtctttctgtgatcggcttatttcatttagcataatgtcttcagggttGAAT----ctattttagatacctcatataagcagaatcatgcagtatttgtctttctgtgattggcttattttatttagcataacgtcttcgaggtttattcacgttgcgtatt s panTro5.chr17 16194400 566 + 83181570 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgcacaacttattcttcccctcaacagtgtatgaaagtgcatgttttcTTTATTTTGCTACAATCATGACATTAATCTATTTTGTTGTATTTTACtttatcatagaaagaacacctaacatgagagctaccctcttaataaaattttaggtatacaataaattactatggactctgggtacaatgcagtacagtagatctctaggccttacacatcttgcttgactggaactttatgttcattgaatagtaactttccatttccccttttcccacagcctctggaaaccaccattctactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagtatttgtctttctgtgatcggcttatttcatttagcataatgtcttcagggttGAAT----ctattttagatacctcatataagcagaatcatgcagtatttgtctttctgtgattggcttattttatttagcataacgtcttcgaggtttattcatgttgcgtatt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16101784 566 + 83442489 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgcacaacttattcttcccctcaacagtgtatgaaagtgcatgttttcTTTATTTTGCTACAATCATGACATTAATCTATTTTGTTGTATTTTACtttatcatagaaagaacacctaacatgagagctaccctcttaataaaattttaggtatacaataaattactatggactctgggtacaatgcagtacggtagatctctaggccttacacatcttgcttgactggaactttatgttcattgaatagtaactttccatttccccttttcccacagcctctggaaaccaccattctactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagtatttgtctttctgtgatcggcttatttcatttagcataatgtcttcagggttGAAT----ctattttagatacctcatataagcagaatcatgcagtatttgtctttctgtgattggcttattttatttagcataacgtcttcgaggtttattcatgttgcgtatt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3936903 565 + 4267968 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgcacaacttattcttcccctcaacagagtatgaaagtgtatgttttctttattttgctacaatcatgacattaatctattttgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctcttaataaaattttaggtgtacaataaattactatggactctgggtacaatgcagtacagtagatctctaggccttacacatcttgcttgactggaactttatgttcattgaatagtaactttccatttccccttttcccacagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagtatttgtctttctgtgatcggcttatttcatttagcataatgtcttcagggttGAAT----ctattttagatacctcatataagcagaatcatgcagtatttgtctttctgtga-tggcttattttatttagcataacgtcttcgaggtttattcacgttgcatatt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1915163 570 - 2193130 gcatttgtaattttaacagatactgctgaactattttgtaaggaggttgcacaacttattctccccctcaacagtgtatgaaagtgcatgttttctatattttgctacaatcatgacattaatctattttgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctcttaataaaactttaggtgtacaataaattactgtggactctgggtataatgcagtacggtggatctccaggccttactcatcttgcttgactggaactttatgttcattgattagtaactttccatttccccttttcccacagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagtatttgtctttctgtgatgggcttatttcatttagcatactgtcttcagggttgaatctgactattttagatacctcatataagcagaatcatgcagtatttgtctttctgtgattggcttatttcatttagcataacatcttcgaggtttattcacattgcatatt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29989439 570 - 77216781 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgtacaacttattttccccctcaacagtgtatgaaagtgcatgttttctatattttgctacaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctgttaataaaactttaggtgtacagtaaatttctatggactctgggtgctatgcagtgcagtagagctctaggccttactcatcttgcttgcctggaactgtatatttattgattagtaactttccatttccccttttcccccagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagcatttgtctttctgtgatcggcttatttcatttagcataatgtcttcaggattGAATCAAactattttagatacctcatataagcagaatcatgcagtatttgtctctctgtgattggcttatttcatttagcataacgtcttcagggtttattcacgttgcatatt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27902045 570 - 80997621 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgtacaacttattttccccctcaacagtgtatgaaagtgcatgttttctatattttgctacaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctgttaataaaactttaggtgtacaataaatttctatggactctgggtgcaatgcagtgcagtagagctctaggccttactcatcttgcttgcctggaactgtatatttattgattagtaactttccatttccccttttcccccagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagcatttgtctttctgtgatcggcttatttcatttagcataatgtcttcaggattGAATCAAactattttagatacctcatataagcagaatcatgcagtatttgtctctctgtgattggcttatttcatttagcataacgtcttcagggtttattcacgttgcatatt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1955534 570 + 10377808 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgtacaacttattttccccctcaacagtgtatgaaagtgcatattttctatattttgctacaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctgttaataaaactttaggtgtacaataaatttctatggactctgggtgcaatgcagtgcagtagagctctaggccttactcatcttgcttgcctggaactgtatatttattgattagtaactttccatttccccttttcccccagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagcatttgtctttctgtgatcggcttatttcatttagcataatgtcttcaggattGAATCAAactattttagatacctcatataagcagaatcatgcagtatttgtctctctgtgattggcttatttcatttagcataacgtcttcagggtttattcacgttgcatatt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1845138 570 - 8458610 gcgtttgtaattttaacagatactgctgaactattttgtaaagaggttgtacaacttattttccccctcaacagtgtatgaaagtgcatgttttctatattttgctacaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctgttaataaaactttaggggtacaataaatttctatggactctgggtgcaatgcagtgcagtagagctctaggctttactcatcttgcttgcctggaactttatatttattgattagtaactttccatttccccttttcccccagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagcatttgtctttctgtgattggcttatttcatttagcataatgtcttcaggACtgaatcaaactattttagatacctcatataagcagaatcatgcagtatttgtctctctgtgattggcttatttcatttagcataacgtcttcagggtttattcatgttgcatatt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64801644 570 + 75148670 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgtacaacttattttgcccctcaacagtgtatgaaagtgcatgttttctatattttgctacaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagagccaccctgttaataaaactttaggtgtacaataaatttctatggactctgggtgcaatgcagtgcagtagagctctaggcgttactcatctcgcttgcctggaactttatatttattgattagtaactttccatttcccctttgcccccagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagcatttgtctttctgtgatcggcttatttcatttagcataatgtcttcaggattGAATCAAAGtattttagatatctcatataagcagaatcgtgcagtatttgtctctctgtgattggcttatttcatttagcataacgtcttcagggtttattcacattgcatatt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2013518 570 + 4244037 gcgtttgtaattttaacagatactgctgaactattttgtaaagaggttatacaacttattttccccctcaacagtgtatgaaagtgcatgttttctatattttgctacaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagaaccaccctgttaataaaactttaggtgtacaataaatttctatggactctgggtgcaatgcagtgcagtagagctctaggccttactcatcttgcttgcttggaactttatatttattgattggtaaatttccatttccccttttcccccagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaataccttgtataagcagaattatgcagcatttgtctttctgtgatcggcttatttcatttagcataatgtcttcaggattGAATCAAactattttagatacctcatataagcagaatcgtgcagtatttgtctctctgtgattggcttatttcatttagcataacgtcttcagggtttattcacgttgcatatt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2052229 568 + 4569836 gcatttgtaattttaacagatactgctgaactattttgtaaagaggttgcacaacttattttccccctcaacagtgtatgaaagtgcatgttttctatattttgctgcaatcatgacattaatctattctgttttattttaCtttatcatagaaagaacacctaacatgagagctaccctgttaacaaaactttaggcgtacaataaatttctatggactctgggtgcaatgcagtgcagtagagctccaggccttactcatcttgcttgcctggaactttatgtttatggattagtaactttcaatttcccctttccccctagcctctggaaaccaccattccactctttgattctatgaatttgcctattttaaatactttgtataagcagaattatgcagcatttgtctttctgtgattggcttatttcatttagcctaatgtcttcagggttgaaccaAactattttagatacctc--ataagcagaattgtgcggtatttgtctttctgtgattggcttatttcatttagcataacgtcttcagggtttattcacgttgcataat i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1744504 560 + 3513951 gcatttgtaattctaacagatactgctgaactgttttgtaaagaggttgtac-acttattcttcccctcaacagtgtatgcgagtcctgtttttctacattttgctatgatcatgacatgaatctatttcattttaTTTTACtttaccatggtaagaatacctaacatgagaggtatcctcttaaaaaaactttaggtgtacaataaattactatggactccaggttcaatgcagtacaggaggtctctgggtcttattcatcttgcttgactgaaactgtatgttcattgattagtaactctctgtttccccttttccctcggtctctggaaaccgccattccactctttgattctatgaatttgcctattttaaatactgtgtataagcagaattatgca------gtctttctgtgactggcttatttcacttagc---atgtcttcagggttgaattggactcttttggatatctcatgaaagcagaatcatgcagtatttgcctttttgtgattggcttatttcatttagcataacgtcttcacggtttattcatgttgcatatt i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1794052 560 + 1920343 gcatttgtaattctaatagatactgctgaactgttttgtaaagaggttgtac-actttttctccccctcaacagtgtatgagagtcctgtttttctacattttgctatgatcatgacattaatctattttgttttattttaCtttatcacgggaagaatacctaacatgagaggtatcctcttaaaaaaactttaggtgtacaataaattactatggactctaggtacaatgcagtacaggaggtctctgggtcttattcatcttgcttgactgaaactgtatgttcattgattagtaa--ctctatttccccttttccc-cagtctctggaaatcaccattccactcttcgattctatgaatttgcctattttaaatactgtgtgttagcagaattatgca------gtctttctgtgactggcttatttcatttagcatgatgtcttcagggttgaatttgactattttagatatctcatgtaagtagaatcttgcagtatttgtcattctgtgattggcttatttcatttagcataacatcttcaaggtttattcatgttgcgtatt i cebCap1.NW_016107730v1 I 65 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e calJac3.chr5 46017945 875 - 159171411 I a score=3658576.000000 s hg38.chr17_GL383564v2_alt 1109 437 + 133151 gcagaatttcgtcctttttaaaggctgaatggaattccagtgtttgcacataccaatttctttttgtatttatctgtcaacggacatttaggtagtttccacattctggctattgtgactcctgctgcaatgaccacaggagtgt----taacatctctttgagatcccaatttcaattcttttggataaataccctgaagtgagattgttggctcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgcgtcattttgca-ttttcccaacagcgtgcaatggttccagctcctctatatcctcaccaatactagttgtc-----tttttttttttt-tgatagtagccatcctgagtggtgtgaagtgatgtctcatggctttgatctgcatttcccttatggctagtgactttgagca s panTro5.chr17 16194966 436 + 83181570 gcagaatttcgtcctttttaaaggctgaatggaattccagtgtttgcacgtaccaatttctttttgtatttatctgtcaacggacatttaggtagtttccacattctggctattgtgactcctgctgcaatgaccacaggagtgt----taacatctctttgagatcccgatttcaattcttttggataaataccctgaagtgagattgttggctcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgcgtcattttaca-ttttcccaacagcgtgcaatggttccaactcctctatatcctcaccaatactagttgcc-----tttttttttttt--gatagtagccatcctgagtggtgtgaagtgatgtctcatggctttgatttgcatttcccttatggctagtgactttgagca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16102350 435 + 83442489 gcagaatttcgtcctttttaaaggctgaatggaattccagtgtttgcacgtaccaatttctttttgtatttatctgtcaacggacatttaggtagtttccacattctggctattgtgactcctgctgcaatgaccacaggagtgt----taacatctctttgagatcccgatttcaattcttttggataaataccctgaagtgagattgttggctcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgcgtcattttaca-ttttcccaacagcgtgcaatggttccaactcctctatatcctcaccaatactagttgcc-----ttttttttttt---gatagtagccatcctgagtggtgtgaagtgatgtctcatggctttgatttgcatttcccttatggctagtgactttgagca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3937468 438 + 4267968 gcagaatttcgtcctttttaaaggctgaatggaattccagtgtttgcacataccaatttctttttgtatttatctgtcaacggacttttaggtagtttccacattctggctattgtgactcctgctgcaatgaccacaggaatgt----taacatctctttgagatcccgatttcaattcttctggataaataccctgaagtgagattgttggctcatatggtaattctatttttaattctttgaggaatct----ccatactggttttcatagtggctgcgtcattttgca-ttttcccagcagcgtgcaatggttccaactcctctatatcctcaccaatactagttgcc-----ttttttttttttttgatagtagccatcctgagtggtgtgaagtgatgtctcatggctttgatttgcatttcccttatggctagtgactttgagca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1915733 437 - 2193130 gcagaatttcctcctttttaaaggctgaatggaattccagtgtttgcacataccaatttctttttctatttatctgtcaacggacatttaggttgtttccacattctggctgttgtgactcctgctgcaatgaccacaggagtgt----taacatctctttgagatcccgatttcaattcttttggataaatacccagaagtgggattgttggatcatatggtaattctagttttaattctttgaggaatct----tcatactgttttccatagcggctgcgtcattttgca-ttttcccaacagtgtgcaatggttccaactcctctatatcctcaccaatacttgttgcc-----tttttttttttt-tgatagtagccatcctgagtggtgtgaagtgatgtctcatggctttgatttgcatttcccttatggctagtgactttgagca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990009 445 - 77216781 gcagaatttcctcctttttaagggctgaatggtattccagtgtttgcacataccaatttctttttctatttatctgtcaatggacatttatgttgttcctacattctggctgttgtgactcctgctgcaacgaccacaggagtgttaactaacatccctttgagattccaatttcaattcttttggataaatacccatatgtgagattgttggatcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgtgtcattttgca-ttttcccaacagtgtgcaatggttccaactcctttatatcctcaccaatacatgttgtc-tctttttttttttttt-tgatagtagccatcctgagtattgtgaagggatgtcttgtggttttgatttgcatttcccttatggctagtgactttgagca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27902615 445 - 80997621 gcagaatttcctcctttttaagggctgaatggtattccagtgtttgcacataccaatttctttttctatttatctgtcaatggacatttatgttgttcctacattctggctgttgtgactcctgctgcaacgaccacaggagtgttaactaacatccctttgagattccaatttcaattcttttggataaatacccatatgtgagattgttggatcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgtgtcattttgca-ttttcccaacagtgtgcaatggttccaactcctttatatcctcaccaatacatgttgtc-tctttttttttttttt-tgatagtagccatcctgagtattgtgaagggatgtcttgtggttttgatttgcatttcccttatggctagtgactttgagca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1956104 443 + 10377808 gcagaatttcctcctttttaagggctgaatggtattccagtgtttgcacataccaatttctttttctatttatctgtcaatggacatttatgttgttcctacattctggctgttgtgactcctgctgcaacgaccacaggagtgttaactaacatccctttgagattccaatttcaattcttttggataaatacccatatgtgagattgttggatcatatggtaattctatttttaattctttgaggaatct----ctatactgttttccatagtggccatgtcattttgca-ttttcccaacagtgtgcaatggttccaactcctttatatcctcaccaatacatgttgtc-tc--tttttttttttt-tgatagtagccatcctgagtattgtgaagggatgtcttgtggttttgatttgcatttcccttatggctagtgactttgagca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1845708 441 - 8458610 gcagaatttcctcctttttaaggactgaatggtattccagtgtttgcacataccaatttctttttctatttatctgtcaatggacatttatgttgttcctacattctggctgttgtgactcctgctgcaacgaccacaggagtgttaactaacatccctttgagatcctgatttcaattcttttggataaatacccagacatgagattgttggatcatatagtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgtgtcattttgca-ttttcccaacagtgtgcaatggttccaactcctttatatcctcaccaatacatgttgcc-----tttttttttttt-tgatagtagccatcctgagtgttgtgaagggatgtctcatggttttgatttgcatttcccttatggctagtgactttgagca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64802214 443 + 75148670 gcagaatttcctccttttaaagggctgaatggtattccagtgtttgcacataccaatttctttttctatttatctgtcaatggacatttatgttgttcctacattctggctattgtgactcctgctgcaacgaccacaggagtgttaactaacatccctttgagatcccgatttcaattcttttggataaatacccagacgtgagattgttggatcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgtgtcattttgcatttttcccaacagtgtgcaatggttccaactcctttatatcctcaccaatacatgttgcc----tcttttttttttt-tgatagtagccatcctgagtgttgtgaagggatgtcttgtggttttgatttgcatttcccttatggctagtgactctgagtg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2014088 445 + 4244037 gcagaatttcctcctttttaagggctgaatggtattccagtgtttgcacataccaatttctttttctatttatctgtcaatggacatttatgttgttcctacattctggctgttgtgactcctgctgcaaggaccacaggagtgttaactaacatccctttgagatcccgatttcaattcttttggataaatacccagacgtgagattgttggatcatatggtaattctatttttaattctttgaggaatct----ccatactgttttccatagtggctgtgtcattttaca-ttttcccaacagtgtgcaatggttccaactcctttatatcctcactaatacatgctgcc-tttttttttttttttt-tgatagtagccatcctgagtgttgtgaagggatgtctcatggttttgatttgcatttcccttatggctagtgactttgagca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2052797 444 + 4569836 gcagaatttcctcctttttaagggctgaatagtattccagtgtttgcacatatcaatttctttttctttttatctgtcaatggacatttatgttgtttctacattctggctgttgtgactcctgctgcaacgaccacaggagtgttaactaacatccctttcagattccaatttcaattcttttggataaatacccagatgtgagattgttggatcatatggtaattctatttttaatttatttaattctttaatgtcatactgttttccatagtggctgtgtcattttgca-ttttcccaacagtgtgcaatggtttcaactcctttatatcctcaccaatacatgttgcc------tttcttttttt-tgatagtagccatcctgactgttgtgaggggatgtctcatggttttgatttgcatttcccttatggctagtgactttgagca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46018820 435 - 159171411 gctgaattccctcttttttaaaggctgaatagcatttcagtgtttgcttataccaatttctttttctttttgtctgtcaactgacatttaggttgcttccccattctggctattgtgactactgctgcaatggccacaggagtgt----caacatctctttgagattctgatttcaattcttttggat-aatacccagaagtgaggttgttggatcatatggtaattctatttttaattctttgaggattct----ccatattgttttccatagtggctgcaccagtttgca-ttttcccaacagtgtggaatggttccagctcctccatatcctcaccaatac---ttgtc---tttttttttttttt-ggttagtagccatcctgagtggtgtgaagtgacatctcctggttttgatttgcatttcccttatggctggtgacttcgagca i calJac3.chr5 I 875 C 0 s saiBol1.JH378271 1745064 438 + 3513951 gcagtatttcctcttttttaaaggctgaatagcatttcagtgtttgcatataccaatttctttttctatttatctgtcaactgacatttaagttgcttccccattctggctactgtgactactgctgcaatggccacaggagtgt----caacatccctttgagatcccgatttcaattcttttggat-aatacccagaagtgaggttgttggctcatatggtaattctatttttaattctttgaggattct----ccatattgttttccctagtggctgcaccattttgca-ttttcccaacagtgtggaacggttctaactcctccatatcctcaccaatac---ttgtcttttttttttttttttt-tgatagtagccatcctgagtggtatgaagtgacatctcgtggttttgatttgcatttcccttatggctagtgactttgagca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1794612 425 + 1920343 gcagaatttcctcttttttaaaggctgaatagcatgtcagtgtttgcatatatcaatttctttttctatttatctgtcaactgacatttaggttgcttccccattctggctattgtgactactgctgcaatggccacaggagtgt----cagcatctctttgagatccaaatttcaattcttttg-----atacccagaggtgaggttgttggatcatatggtaattctatttttaattctttaaggattct----ccatattgttttccatagtggctgtaccgttttgca-ttttcccaacagtgtggaacagttccaactcctccatatcctcaccaatac---ttgtc---------tttttttt-ggatagtagccatcctgagtggtgtgaagtgacatctcttggttttgatttgcatttcccttatggctagtgactttgagca i cebCap1.NW_016107730v1 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=723532.000000 s hg38.chr17_GL383564v2_alt 1546 74 + 133151 ttttttca-tatacctgatggccgtttgtacgtctactttagagaaatgtctatagaaatccttagcccattttt s panTro5.chr17 16195402 74 + 83181570 ttttttca-tatacctgatggccgtttgtacgtctactttagagaaatgtctatagaaatccttagcccattttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16102785 74 + 83442489 ttttttca-tatacctgatggccgtttgtacgtctactttagagaaatgtctatagaaatccttagcccattttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3937906 74 + 4267968 ttttttca-tatacctgatggccgtttgtaagtctactttagagaaatgtctatagaaatccttagcccattttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916170 74 - 2193130 ttttttca-tatacctgatggccatttgtatgtctactttagagaaatgtctatggaagtccttagcccgttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990454 74 - 77216781 ttttttca-tatatctgatggccatttgtatgtctattttagagaaatgtctatagaagtccttagcccattttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903060 74 - 80997621 ttttttca-tatatctgatggccatttgtatgtctattttagagaaatgtctatagaagtccttagcccattttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1956547 74 + 10377808 ttttttca-tatatctgatggccatttgtatgtctattttagagaaatgtctatagaagtccttagccccttttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846149 74 - 8458610 ttttttca-tatatctgatggccatttgtatgtctactttagagaaatgtctatagaagtccttagcccattttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64802657 74 + 75148670 ttttttca-tatatctgatggccatttgtatgtctactttacagaaatgtctatacaagtccttagcccattttt i chlSab2.chr16 C 0 I 25 s manLeu1.NW_012106252v1 2014533 74 + 4244037 ttttttca-tatatctgatggccatttgtatgtctactttagagaaatgtctatagaagtccttagcccattttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2053241 74 + 4569836 ttttttca-tatatctgatggccatttgtatgtctactttagagaaatgtctatagaagtccttagcccattttt i colAng1.NW_012122154v1 C 0 I 965 s calJac3.chr5 46019255 74 - 159171411 ttttttca-tgtacctgatgagcattcgtatgtctgctttagagaaatgtctgtagaagtccttagcccattttc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1745502 74 + 3513951 ttttttca-tgtacctgatgagcgtttgtttgtctgctttagagaaatgtctatagaagtccttagcccattttc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795037 74 + 1920343 ttttttca-tgtgcctgatgagcatttgtatgtctgctttagagaaatgtctatagaagtccttagcccattttc i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22719023 75 + 28711273 tcttttcattatacttgttggccatttgtatgtcttctttggagatatgtctatacaagtccttagctcattttt i otoGar3.GL873537 N 0 I 1 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=16562.000000 s hg38.chr17_GL383564v2_alt 1620 2 + 133151 aa s panTro5.chr17 16195476 2 + 83181570 aa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16102859 2 + 83442489 aa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3937980 2 + 4267968 aa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916244 2 - 2193130 aa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990528 2 - 77216781 aa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903134 2 - 80997621 aa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1956621 2 + 10377808 aa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846223 2 - 8458610 aa i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2014607 2 + 4244037 aa i manLeu1.NW_012106252v1 C 0 I 19 s calJac3.chr5 46019329 2 - 159171411 aa i calJac3.chr5 C 0 I 8 s saiBol1.JH378271 1745576 2 + 3513951 aa i saiBol1.JH378271 C 0 I 8 s cebCap1.NW_016107730v1 1795111 2 + 1920343 aa i cebCap1.NW_016107730v1 C 0 I 8 s otoGar3.GL873537 22719099 2 + 28711273 aa i otoGar3.GL873537 I 1 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e colAng1.NW_012122154v1 2053315 965 + 4569836 I e chlSab2.chr16 64802731 25 + 75148670 I a score=-13226.000000 s hg38.chr17_GL383564v2_alt 1622 13 + 133151 -----attaaaaaa------aatt s panTro5.chr17 16195478 13 + 83181570 -----attaaaaaa------aatt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16102861 12 + 83442489 -----att-aaaaa------aatt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3937982 13 + 4267968 -----attaaaaaa------aatt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916246 19 - 2193130 -----attaaaaaatttttttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990530 12 - 77216781 ------ttaaaaaa------attt i rheMac8.chr16 C 0 I 10 s macFas5.chr16 27903136 9 - 80997621 ------ttaaaaaa------a--- i macFas5.chr16 C 0 I 10 s macNem1.NW_012014910v1 1956623 9 + 10377808 ------ttaaaaaa------a--- i macNem1.NW_012014910v1 C 0 I 10 s cerAty1.NW_012006043v1 1846225 12 - 8458610 ------ttaaattt------tttt i cerAty1.NW_012006043v1 C 0 I 10 s calJac3.chr5 46019339 13 - 159171411 -----tttttaaac------attt i calJac3.chr5 I 8 I 2 s saiBol1.JH378271 1745586 10 + 3513951 -----ttt---aaa------attt i saiBol1.JH378271 I 8 I 2 s cebCap1.NW_016107730v1 1795121 13 + 1920343 -----tttttttta------attt i cebCap1.NW_016107730v1 I 8 I 2 s otoGar3.GL873537 22719101 18 + 28711273 attggattgttaat------tttt i otoGar3.GL873537 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I e colAng1.NW_012122154v1 2053315 965 + 4569836 I e manLeu1.NW_012106252v1 2014609 19 + 4244037 I e chlSab2.chr16 64802731 25 + 75148670 I a score=1044962.000000 s hg38.chr17_GL383564v2_alt 1635 109 + 133151 a-ttttttacagttgagttgtaggacttccttatatattttggaggctaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttgtattttcact s panTro5.chr17 16195491 109 + 83181570 a-ttttttacagttgagttgtaggacttccttatatattttggaggctaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttgtgttttcact i panTro5.chr17 C 0 C 0 s panPan2.chr17 16102873 109 + 83442489 a-tttttcacagttgagttgtaggacttccttatatattttggaggctaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttgtgttttcact i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3937995 109 + 4267968 a-ttttttacagttgagttgtaggacttccttatatattttggaggctaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttgtattttcact i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916265 109 - 2193130 a-ttttttacagttgagttgtaggacttctttatatattttggaggctaaccctttatcagat-atatgatttacaactcttt-ctcccactcagtaggttgtatttttact i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990552 109 - 77216781 a-ttttttacagttgagttgtaggacttcctcatatattttggaggttaaccctttatcagat-acatgatttacaattcttt-ctcccattcagtaggttgtatttttact i rheMac8.chr16 I 10 C 0 s macFas5.chr16 27903155 109 - 80997621 a-ttttttacagttgagttgtaggacttcctcatatattttggaggttaaccctttatcagat-acatgatttacaattcttt-ctcccattcagtaggttgtatttttact i macFas5.chr16 I 10 C 0 s macNem1.NW_012014910v1 1956642 110 + 10377808 atttttttacagttgagttgtaggacttcctcatatattttggaggttaaccctttatcagat-acatgatttacaattcttt-ctcccattcagtaggttgtatttttact i macNem1.NW_012014910v1 I 10 C 0 s cerAty1.NW_012006043v1 1846247 109 - 8458610 a-ttttttacagttgaattgtaggacttcttcatgtattttggaggctaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttatatttttact i cerAty1.NW_012006043v1 I 10 C 0 s chlSab2.chr16 64802756 109 + 75148670 a-atttttacagttgagttgtaggacttcctcatgtattttggaggttaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttgtatttttact i chlSab2.chr16 I 25 C 0 s manLeu1.NW_012106252v1 2014628 109 + 4244037 a-ttttttacagttgagttgtaggacttcctcatgtattttggaggctaaccctttatcagat-atatgatttacaattcttt-ctcccattcagtaggttgtatttttaca i manLeu1.NW_012106252v1 I 19 C 0 s colAng1.NW_012122154v1 2054280 109 + 4569836 a-ttttttacagttgagttgtaggacttcctcatgtattttggaggttaaccctttatcagaa-atatgatttacaagtcttt-ctcccattcagtaggttgtatttttact i colAng1.NW_012122154v1 I 965 C 0 s calJac3.chr5 46019354 109 - 159171411 a-ttttttacagttgagttgtaggacttccttatatattttggaggctaacgctttatcagat-atttgatttacaatttttt-ctcccgttcagtgggttgtatttttact i calJac3.chr5 I 2 C 0 s saiBol1.JH378271 1745598 109 + 3513951 a-ttttttacaattgagttgtaggacttccttacatattttggaggctaacgctttatcagat-atttgaattacaaattttt-cttctgttcagtgggttgtatttttact i saiBol1.JH378271 I 2 C 0 s cebCap1.NW_016107730v1 1795136 109 + 1920343 a-ttttttacagttgagttgtaagacttccttatatattttggaggctaacgctttatcagat-atttgatttacaatttttt-ctcccgttcaatgggttgtatttttact i cebCap1.NW_016107730v1 I 2 C 0 s otoGar3.GL873537 22719119 111 + 28711273 -tcttttaacagttgagttgtaggagttccttatatattttggaggttagccctatagcagataaaatggtttgtaattttttcctcctattctatcggttgccatttcact i otoGar3.GL873537 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=675204.000000 s hg38.chr17_GL383564v2_alt 1744 69 + 133151 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAACTTAAATA s panTro5.chr17 16195600 69 + 83181570 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAACTTAAATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16102982 69 + 83442489 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTCTGCTAACTTAAATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938104 69 + 4267968 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAACTTAAATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916374 69 - 2193130 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTCAAC-TTCTAATCTTTGCTAACTTAAATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990661 69 - 77216781 ctgttttttcttttgctgtgcaaaagt-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAAATTAAATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903264 69 - 80997621 ctgttgtttcttttgctgtgcaaaagt-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAAATTAAATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1956752 69 + 10377808 ctgttgtttcttttgctgtgcaaaagt-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAAATTAAATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846356 69 - 8458610 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAACTTAAATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64802865 69 + 75148670 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAACTTAAATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2014737 69 + 4244037 ctgttgtttcttttgctgtgcaaaagc-tttttagtAAGACTAAAC-TTCTGATCTTTGCTAACTTAAATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054389 69 + 4569836 ctgttgtttcttttgctgtgcaaaagc-tttttagtaagactaaac-ttctgatctttgctAACTTAAATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019463 66 - 159171411 ctgttgtttctcttgctgtgcaacagc-tttttagtAAGATTAACT-TTTTGATCTTTACTATGTTA---A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1745707 69 + 3513951 ctgttgtttcttttgctgtgcaacagc-tttttagtaagattaact-ttttgatctttgctAAGTTAAATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795245 69 + 1920343 ctgttgtttcttttgctgtgcaacagg-tttttagtAAGATTAACT-TTTTGAACTTTGCTAAGTTAAATA i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22719230 67 + 28711273 ---ttatctcctttgctttataaaaactttttTAGTGAGATTAACT-GTCTGATCTTTATTAACATAAGTA i otoGar3.GL873537 C 0 I 300 s canFam3.chr9 21336796 64 + 61074082 ctgttttttcta-tactttgccaacat-c-----gtgacattaacctttttgatctttgctaatttaaata i canFam3.chr9 N 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=1133010.000000 s hg38.chr17_GL383564v2_alt 1813 125 + 133151 AGTAAAAAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACACCAGTAACAGTAAAATCCATTAaaaaaca-------caacacttatttagtgcttaccatgtactc-tgt s panTro5.chr17 16195669 125 + 83181570 AGTAAAAAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACACCAGTAACAGTAAAATCCATTAaaaaaca-------caacacttatttagtgcttaccatgtactc-tgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103051 125 + 83442489 AGTAAAAAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACACCAGTAACAGTAAAATCCATTAaaaaaca-------caacacttatttagtgcttaccatgtactc-tgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938173 125 + 4267968 AGTAAAAAATAA---GCAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACACCAGTAACAGTAAAATCCATTAaaaaaca-------caacacttatttagtgcttaccatgtactc-tgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916443 119 - 2193130 AGTAAAAAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCATTAAAAAACA-------caacacttatttagtgcttaccatgtactc-tgt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990730 119 - 77216781 AGTAAATAATAA---CTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCATTGaaaaaca-------caacacttatttagtgcttaccgtgtactc-tgt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903333 119 - 80997621 AGTAAATAATAA---CTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCATTGaaaaaca-------caacacttatttagtgcttaccgtgtactc-tgt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1956821 119 + 10377808 AGTAAATAATAA---CTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCATTGaaaaaca-------caacacttatttagtgcttaccgtgtactc-tgt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846425 119 - 8458610 AGTAAAAAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCACTGaaaaaca-------caacacttatttagtgcttatcgtgtactc-tgt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64802934 119 + 75148670 AGTAAATAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCATTGaaaaaca-------caacacttatttagtgcttaccgtgtactc-tgt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2014806 119 + 4244037 AGTAAAAAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CAGTAAAATCCACTGaaaaaca-------caacacttatttagtgcttaccgtgtactc-tgt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054458 119 + 4569836 AGTAAATAATAA---GTAATTTAATAAGCA-TTTTTGAATTATGAATGGTGTAAGCATGTAAACACAC------CATTAAAATCCATTGAAAACCA-------caacacttatttagtgcttaccatgtactc-tgt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019529 119 - 159171411 AGTAAAAAAATA---GTGATTTAATAAGCATTTTTTGAATTATAAATGGTGTAAGCATCTAAACATAC------CAGCAAAA-CCATTAAAAGACA-------caacacttatttagtgcttaccatgtactc-tgt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1745776 120 + 3513951 AGTGAAAAAATA---GTGATTTAATAAGCATTTTTTGAATTACAAATGGTGTAAGCATCTAAACACAC------CAGTAAAAGCCATTAAAAAACA-------caacacctatttagtgcttaccatgtactc-tgt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795314 121 + 1920343 AGTGAAAAAATA---GTGATTTAATAAGCATTTTTTGAATTATAAATGGTGTAAGCATCTAAACACAC------CAGTAAAAGCCATTAAAAAACA-------caacacttatttagtgcttaccatgtactcttgt i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22719597 103 + 28711273 aggaaaaaacaaaaGATGATTTAATAAACA-TTTTTGAATTATGAATGGGGTGGGCATCTAAACACAT------------GATTTat--------------------aattatccggcatttactgtgtacta-tgt i otoGar3.GL873537 I 300 C 0 s canFam3.chr9 21336860 125 + 61074082 ggtacaaaa-gg---gtaatttaataagca-tttttgaattttaaatgatgtgtgcatctaaaccgat------gattaaaggccacttgAAAAAAGCCCagctaacacttatttatagtgtttcctgtgcca-tga i canFam3.chr9 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=1693492.000000 s hg38.chr17_GL383564v2_alt 1938 152 + 133151 gctagacactattttacgtgatttacag----------------gtatggatttttttaa-aacttaaa-----tccattagctaggtgctattgtca-c-tccattgtgcataagcagaatttgaggcacagagaggtcaagtcaccagcccaagttcacacagctaataaatga s panTro5.chr17 16195794 152 + 83181570 gctagacactattttacgtgatttacag----------------gtatggatttttttaa-aacttaaa-----tccattagctaggtgctattgtca-c-tccattgtgcataagcagaatttgaggcacagagaggtcaagtcaccagcccaagttcacacagctaataaatga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103176 152 + 83442489 gctagacactattttacgtgatttacag----------------gtatggatttttttaa-aacttaaa-----tccattagctaggtgctattgtca-c-tccattgtgcataagcagaatttgaggcacagagaggtcaagtcaccagcccaagttcacacagctaataaatga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938298 152 + 4267968 gctagacactattttacgtgatttacag----------------gtatggatttttttaa-aacttaaa-----tccattagctaggtgctattgtca-c-tccattgtgcataagcagaatttgaggcacagagaggtcaagtcaccagcccaagttcacacagctaataaatga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916562 151 - 2193130 gctagacactattttatgtgatttacag----------------gtat-gatttttttaa-aacttaaa-----tccattagctaggtgctactgtca-c-tccattgtgcataagcagaatttgaggcacagagagatcaagtcaccagcccaagttcacacagctaataaatga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29990849 152 - 77216781 gctagacactattttacatgatttacag----------------gtatcaatttttttaa-aacttaaa-----tccattagctaggcgctattgcca-c-tccattgtgcataagcagaaattgaggcacagaaacgtcaagtcaccagcccaagttcacatagctaataaatga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903452 152 - 80997621 gctagacactattttacatgatttacag----------------gtatcaatttttttaa-aacttaaa-----tccattagctaggtgctattgcca-c-tccattgtgcataagcagaaattgaggcacagaaacgtcaagtcaccagcccaagttcacatagctaataaatga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1956940 152 + 10377808 gctagacactattttacatgatttacag----------------gtatcaatttttttaa-aacttaaa-----tccattagctatgtgctattgcca-c-tccattgtgcataagcagaaattgaggcacagaaacgtcaagtcaccagcccaagttcacatagctaataaatga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846544 152 - 8458610 gctagacactattttacatgatttacag----------------gtatcaatttttttaa-aacttaaa-----tccattagctaggtgctattgcca-c-tccattgtgcataagcagaaattgaggcacagaaacgtcaagtcaccagcccaagttcacacagctaataaatga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803053 152 + 75148670 gctagacactattttacatgatttacag----------------ctatcaattttttaaa-aacctaaa-----tccattagctaggtgctattgcca-c-tccattgtgcataagcagaaattgaggcacagaaacgtcaagtcaccagcccaagttcacacagctaataaatga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2014925 152 + 4244037 gctagacactattttacatgatttacag----------------gtatcaatttttttaa-aacttaaa-----tccattagctaggtgctattgcca-c-tccattgtgcataagcagaaattgaggcacagaaacgtcgagtcaccagcccaagttcacacagctaataaatga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054577 152 + 4569836 gctagacactattttacatgatttacag----------------gtatcaattttttaaa-aacttaaa-----tccattagctaggtgctattgcca-c-tccgttgtgcataagcagaaattgaggcacagaaacgtcaagtcaccagcccaagttcacacagctaataaatga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019648 152 - 159171411 gctagacacacttttacacaatttacag----------------gtattaatttctttaa-gacttaaa-----tccactagacaggtgctattgcta-c-tccattgtgcataggcagaaattgaggcacagagagttcaagtcaccagtccgagttcacacagctaataaatga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1745896 152 + 3513951 gctagacacaattttacacaatttacag----------------gtatcaatttctttaa-gacttaaa-----tccactagctaggtgctattgcca-c-tccattgtgcataggcagaaattgaggcacagagaggtcaagtcaccagtccaagttcacacagctaataaatga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795435 152 + 1920343 gctagacacaattttacacaatttacag----------------gtatcaatttctttaa-gacttaaa-----tccattagctaggtgctattgcca-c-tccattgtgcataggcagaaattgaggcacagagaggtcaagtcaccagtccaagttcacacagctaataaaaga i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22719700 158 + 28711273 gccagacactattttaaatgatttaaag----------------gtatcaacttctttaa-cacttaaactaagtctataaactgggtgctattactacc-tccattgtgcataggcagaaactgaggtacaaaaaggtcaagtcacctgcctgagtttatacagctagtaaacta i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21336985 163 + 61074082 gctggacattatttcaaatgatttacagatcatttaaatattaaatatcagattatttaa-caattaaaacaaatctatgagctagatgctatgactg-cttccattttgcatgtgtggaaaccacagcacagagaggtcaagccaccaggccaagttttcacag----------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 307407 158 - 852752 gccagacaccatttaaaatg-cttacag----------------atatcaacttctttaatcatttaaagaaaatcaatgagctaggtgctattacca-tggctgttttgcatatgtggaaactgaggctcagagaggtcaaatgactagcccaagttgacacagctagtaaatga i dasNov3.JH570468 N 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=279580.000000 s hg38.chr17_GL383564v2_alt 2090 21 + 133151 -----tagaaccagaatctgaaccca s panTro5.chr17 16195946 21 + 83181570 -----tagaaccagaatctgaaccca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103328 21 + 83442489 -----tagaaccagaatctgaaccca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938450 21 + 4267968 -----tagaaccagaatctgaaccca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916713 21 - 2193130 -----tagaaccagaatctgaaccca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991001 21 - 77216781 -----tagaaccagaatctgaaccca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903604 21 - 80997621 -----tagaaccagaatctgaaccca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957092 21 + 10377808 -----tagaaccagaatctgaaccca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846696 21 - 8458610 -----tagaaccagaatctgaaccca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803205 21 + 75148670 -----tagaaccagaatctgaaccca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015077 21 + 4244037 -----tagaaccagaatctgaaccca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054729 21 + 4569836 -----taggaccagaatctgaaccca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019800 21 - 159171411 -----tagaaccaaaatctgaaccca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746048 21 + 3513951 -----tagaaccaaaatctgaaccca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795587 21 + 1920343 -----cagaaccaaaatctgaaccca i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35836219 21 - 65901067 -----tagaaccagaatctgagccca i micMur3.chr16 N 0 C 0 s otoGar3.GL873537 22719858 21 + 28711273 -----cagaaacagaatctgaaccca i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337148 18 + 61074082 --------aacccgattctgaatcca i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 307565 26 - 852752 caaagcaaagccagcatttgaatcta i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6905731 900 - 7032639 I a score=1617513.000000 s hg38.chr17_GL383564v2_alt 2111 124 + 133151 ggcaggctggatccaaaattcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTAATAGGTCTTGGTATGAGGTAAATAAGGGGAAATTTCCTGCCTT-AGCATGTAGATAAAGAAA s panTro5.chr17 16195967 124 + 83181570 ggcaggctggatccaaaattcactgtcttaaac-ct-ctactatgctgCATTAAAGGATTTAGTAATAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCCTT-AGCATGTAGATAAAGAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103349 124 + 83442489 ggcaggctggatccaaaattcactgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTAATAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCCTT-AGCATGTAGATAAAGAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938471 124 + 4267968 ggcaggctggatccaaaattcattgtcttaaac-ct-ccactatgctgcattAAAGGATTTTGTAATAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCCTT-AGCATGTAGATAAAGAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916734 124 - 2193130 ggcaggctggatccaaaattcattgtcttaaac-ct-ctgctatgctgCATTAAAGGATTTTGTAATAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCCTT-AGCATGTATATAAAGAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991022 124 - 77216781 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGTGCT-AACATGTCGACAAAGAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903625 124 - 80997621 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGTGCT-AGCATGTCGACAAAGAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957113 124 + 10377808 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGTGCT-AGCATGTCGACAAAGAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846717 124 - 8458610 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCGCT-AGCATGTCGACAAAGAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803226 124 + 75148670 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGTGCT-AGCATGTCGACAAAGAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015098 124 + 4244037 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCGCT-AGCATGTTGACAAAGAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054750 124 + 4569836 ggcagtctggctccaaagttcattgtcttaaac-ct-ctactatgctgCATTAAAGGATTTTGTATTAGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCGCT-AGCATGTCGACAAAGAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019821 124 - 159171411 ggcaggctggctcccaagctcattatcttaacc-ct-ctactatactgCATTAAAGGATTTTGTAATAGGTCTTGGTATGAGGTAAATAAGGGAAAATGTCCTGCTCT-AGCATGTAGCTGAAGGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746069 124 + 3513951 ggcaggctggctcccaagttcattgtcttaacc-ct-ctactatactgCATTAAAGGATTTTGTAATGGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCTTGCTCT-AGCATGTAGCTGAAGAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795608 124 + 1920343 ggcatgctggctcccaagttcattgtcttaacc-ct-ctactacactgtATTAAAGGATTTTGTAATGGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCCTGCTCT-AGCATGTAGCTGAAGAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906631 124 - 7032639 ggcaggctggctcccaagttcattgtcttaacc-ct-ctactatactgtATTAAAGCATTTTGTAATGGGTCTTGGTATGAGGTAAATAAGGGGAAATGTCTTGCTCT-AGCATGTAGCTGAAGAAA i aotNan1.NW_018502359v1 I 900 C 0 s micMur3.chr16 35836240 122 - 65901067 ggcaggctggctccaaagtttgtggtcttaaccact-ctactatgcAGCTTAAAATGATTTTGTAATAGGTCCTACTATGAGATAAATAAGGGGAAACGTCCTGCCCTAAGAAT----ATAAAGAAA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22719879 117 + 28711273 ggctggccg----caaagtttgtgaccttatccact-ctaccaCGCAGCTTAAAAGGATTTTGTAATGTGCCCTATGATGAAATAAATAAGGGGAAATGTCCTTCCCT-GGAAT----ATAAGGAAA i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21337166 124 + 61074082 ggcaggctggctccagagttcttggctttcacc-atgctactatcctgCATTAAAGG-CTTTGTAATGGGCCCGGGTAGGAGATAAACAAGGTCAAATGTGCTGCCCT-AGAATGTGGATAAAGGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 307591 121 - 852752 ----tgccggcttcagagtttgtggcctcagcctct-ctactacattgCATTAAAGGGCTTTATAATGAGCCCAAATATGAGATAAATAAGGACAAATGTCCTGCCCT-AGAATGTAGATAAAGGCA i dasNov3.JH570468 C 0 C 0 a score=20669.000000 s hg38.chr17_GL383564v2_alt 2235 2 + 133151 -CT s panTro5.chr17 16196091 2 + 83181570 -CT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103473 2 + 83442489 -CT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938595 2 + 4267968 -CT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916858 2 - 2193130 -CT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991146 2 - 77216781 -CT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903749 2 - 80997621 -CT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957237 2 + 10377808 -CT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846841 2 - 8458610 -CT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803350 2 + 75148670 -CT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015222 2 + 4244037 -CT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054874 2 + 4569836 -CT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019945 2 - 159171411 -CT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746193 2 + 3513951 -CT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795732 2 + 1920343 -CT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906755 2 - 7032639 -CT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836362 2 - 65901067 -CT i micMur3.chr16 C 0 C 0 s canFam3.chr9 21337290 2 + 61074082 -CC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 307712 2 - 852752 GC- i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22719996 2 + 28711273 I a score=250248.000000 s hg38.chr17_GL383564v2_alt 2237 17 + 133151 CTAGGATCAGGGAACAA s panTro5.chr17 16196093 17 + 83181570 CTAGGATCAGGGAACAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103475 17 + 83442489 CTAGGATCAGGGAACAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938597 17 + 4267968 CTAGGATCAGGGAACAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916860 17 - 2193130 CTAGGATCAGGGAACAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991148 17 - 77216781 CTAGGATCAGGGAACAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903751 17 - 80997621 CTAGGATCAGGGAACAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957239 17 + 10377808 CTAGGATCAGGGAACAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846843 17 - 8458610 CTAGGATCAGGGAACAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803352 17 + 75148670 CTAGGATCAGGGAACAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015224 17 + 4244037 CTAGGATCAGGGAACAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054876 17 + 4569836 CTAGGATCACGGAACAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019947 17 - 159171411 CTAGGATCAGGAAACAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746195 17 + 3513951 CTAGGATCAGGAAACAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795734 17 + 1920343 GTAGGCTCAGGAAACAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906757 17 - 7032639 CTAGGATCAGGAAACAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836364 17 - 65901067 CTAGGATCTGGGAACAA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22719998 17 + 28711273 CTAGGATCCAGGAACAA i otoGar3.GL873537 I 2 C 0 s canFam3.chr9 21337292 17 + 61074082 CTGGCATCAGAGGATGA i canFam3.chr9 C 0 I 6 s dasNov3.JH570468 307714 17 - 852752 CTGGGATCAGGGACTGA i dasNov3.JH570468 C 0 C 0 a score=69831.000000 s hg38.chr17_GL383564v2_alt 2254 6 + 133151 AGGGGA s panTro5.chr17 16196110 6 + 83181570 AGGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103492 6 + 83442489 AGGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938614 6 + 4267968 AGGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916877 6 - 2193130 AGGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991165 6 - 77216781 AAGAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903768 6 - 80997621 AAGAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957256 6 + 10377808 AAGAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846860 6 - 8458610 AGGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803369 6 + 75148670 AGGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015241 6 + 4244037 AGAGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054893 6 + 4569836 AGGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019964 6 - 159171411 AGGGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746212 6 + 3513951 AGGGGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795751 6 + 1920343 AGGGGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906774 6 - 7032639 AGGGGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836381 6 - 65901067 AGGGGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22720015 6 + 28711273 AAGGGA i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 307731 6 - 852752 AGAGGC i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21337309 6 + 61074082 I a score=700342.000000 s hg38.chr17_GL383564v2_alt 2260 57 + 133151 GGGGAAATGAAGATAACT-TTTTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA s panTro5.chr17 16196116 57 + 83181570 GGGGAAATGAAGATAACT-TTTTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103498 57 + 83442489 GGGGAAATGAAGATAACT-TTTTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938620 57 + 4267968 GGGGAAATGAAGATAACT-TTTTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916883 57 - 2193130 GGGGAAATGAAGATCACT-TTTTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991171 57 - 77216781 GGGAAGATGAAGATATTT-TTCTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903774 57 - 80997621 GGGAAGATGAAGATATTT-TTCTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957262 57 + 10377808 GGGAAGATGAAGATATTT-TTCTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846866 57 - 8458610 GGGAACATGAAGATATTT-TTCTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803375 57 + 75148670 GGGAACATGAAGATATTT-TTCTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015247 57 + 4244037 GGGAACATGAAGATATTT-TTCTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054899 57 + 4569836 GGGAACATGAAGATGTTT-TTTTC--AGTATTTAGTCTCTGATGACCTTAAGACCTGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46019970 57 - 159171411 TGGGAAATGATGACAATG-TTTTC--ATGATTTAGTCTCTGATGACCTTAAGACCTGGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746218 51 + 3513951 TGGGAAATGATGACAATG-TTTTC--ATGATTTAGTCTCTGATGACCTCAAGAC------ i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795757 57 + 1920343 TGGGAAATGATGACAATG-TTTTC--ATGGTTTAGTCTCCGATGACCTTAAGACCTGGGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906780 57 - 7032639 TGGGAAATGATGACAATG-TTTTC--ATGATTTAGTCTCTGATGACCTTAAGACCTGGGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836387 59 - 65901067 GAGGGAGTGAAGAGAATT-GTTTTTAATCATTTAGTCTCTGATGACCTTGAGACTTGGGA i micMur3.chr16 C 0 I 1 s otoGar3.GL873537 22720021 57 + 28711273 GAAGAAGTGAAGACAATT-TTTTT--ATTACTTAGTTTCTGATGACTTTGAGACCTGGGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337315 58 + 61074082 GAGGAAGTGCAGACAATTGTTTTT--GTCAGCTAGTCTCTGATGACCTGGAGACCTGAGT i canFam3.chr9 I 6 C 0 s dasNov3.JH570468 307737 57 - 852752 ATGTAGGTGAAGAGAGTTCTTTCC--ATCATTTGGTCTCTGATGACCT-GGGACCTGGGA i dasNov3.JH570468 C 0 C 0 a score=8460.000000 s hg38.chr17_GL383564v2_alt 2317 1 + 133151 T s panTro5.chr17 16196173 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103555 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938677 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916940 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991228 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903831 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957319 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846923 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803432 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015304 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054956 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46020027 1 - 159171411 T i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1795814 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906837 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22720078 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337373 1 + 61074082 C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 307794 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35836446 1 - 65901067 I e saiBol1.JH378271 1746269 0 + 3513951 C a score=200814.000000 s hg38.chr17_GL383564v2_alt 2318 17 + 133151 AAGAATAAAGCAAACTA s panTro5.chr17 16196174 17 + 83181570 AAGAATAAAGCAAACTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103556 17 + 83442489 AAGAATAAAGCAAACTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938678 17 + 4267968 AAGAATAAAGCAAACTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916941 17 - 2193130 AAGAATAAAGCAAACTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991229 17 - 77216781 AGGAATAAAGCAAAATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903832 17 - 80997621 AGGAATAAAGCAAAATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957320 17 + 10377808 AGGAATAAAGCAAAATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846924 17 - 8458610 AGGAATAAAGCAAAATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803433 17 + 75148670 AGGAAtaaagcaaaata i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015305 17 + 4244037 AGGAATAAAGCAAAATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054957 17 + 4569836 AGGAATAAAGCAAAATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46020028 17 - 159171411 AAGAATAAAACAAAATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746269 17 + 3513951 AAGAATAAAACAAAATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795815 17 + 1920343 AAGAATAAAACAAAATA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906838 17 - 7032639 AAGAATAAAACAAAATA i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21337374 17 + 61074082 AAGAATAAAGCAGACTA i canFam3.chr9 C 0 I 7 s dasNov3.JH570468 307795 17 - 852752 AAGAAGAAAGCAGAGTA i dasNov3.JH570468 C 0 I 23 e micMur3.chr16 35836446 1 - 65901067 I e otoGar3.GL873537 22720079 0 + 28711273 C a score=878463.000000 s hg38.chr17_GL383564v2_alt 2335 89 + 133151 ggcagggcgctgtggctcactcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtcggagaccagc s panTro5.chr17 16196191 89 + 83181570 ggcagggtgctgtggctcactcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttggagaccagc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103573 89 + 83442489 ggcagggtgctgtggctcactcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttggagaccagc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938695 89 + 4267968 GACAgggcgctgtggctcactcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttggagaccagc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1916958 89 - 2193130 ggcagggcgctgtggctcactcctgtaatcccagcactttgggaggccaaggtgggtggattaactgaggtcaggagttggagaccagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991246 89 - 77216781 ggcagggcgctgtggctcactcctgtaatcccagcactttgggagaccaagatgggtggatcacctgaggtctggagttggagaccagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27903849 89 - 80997621 ggcagggcgctgtggctcactcctgtaatcccagcactttgggagaccaagatgggtggatcacctgaggtctggagttggagaccagc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957337 89 + 10377808 ggcagggcgctgtggctcactcctgtaatcccagcactttgggagaccaagatgggtggatcacctgaggtctggagttggagaccagc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1846941 89 - 8458610 ggcagggtgctgtggctcactcctgtaattccagcactttgggagaccaaggtgggtggattacctgagctctggagttggagaccagc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64803450 89 + 75148670 ggcagggcgctgtggctcactcctgtaatcccagcactttgggagaccaaggtgggtggatcacctgagctctggagttggagaccagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015322 89 + 4244037 ggcagggcgcggtggctcactcctgtaattccagcactttgggagaccaaggtgggtggattacctgagctctggagttggagaccagc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2054974 89 + 4569836 ggcagggctctgtggctcactcctgtaatcccagcactttgggagaccaaggtgggtggattatctgaggtctggagttggagaccagc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46020045 89 - 159171411 ggcagggcttggtgggtcacacctgtaatcccagcactttgggaggccaaggtggttggatcacctgaggtcaggaatttgagaccagc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746286 89 + 3513951 ggcagggcttggtgggtcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggaatttgagactagc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795832 89 + 1920343 ggcagggcttgatgggtcatgcctgtaatcccagcactttgggaggccaaggtgggcggatcacctgaggtcaggaatttgagaccagc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906855 89 - 7032639 ggctgggcttggtgggtcacacctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaagtcaggaatttgaaaccagc i aotNan1.NW_018502359v1 C 0 C 0 e micMur3.chr16 35836446 1 - 65901067 I e dasNov3.JH570468 307812 23 - 852752 I e canFam3.chr9 21337391 7 + 61074082 I e otoGar3.GL873537 22720079 0 + 28711273 C a score=1618023.000000 s hg38.chr17_GL383564v2_alt 2424 204 + 133151 ctggctaacatggtgaaactccatctctgctaaaaatacaaaaaattagccggacgtggtggcgtacgcctgtaatcccagctattcaggaggcggaggcaggagaatctcttgaatccaggagacggaggttgcagtgagccaagatcagaccactgctctccagcttgggcaacaagagcaaaactccatct-a-----------------aaaagaaaa s panTro5.chr17 16196280 204 + 83181570 ctggctaacatggtgaaactccatctctgctaaaaatacaaaaaattagccggacgtggtggcgtacgcctgtaatcccagctattcaggaggcggaggcaggagaatctcttgaatccaggagacggaggttgcagtgagccaagatcagaccactgctctccagcttgggcaacaagagcaaaactccatct-a-----------------aaaagaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103662 203 + 83442489 ctggctaacatggtgaaactccatctctgctaaaaatacaaaaaattagccggacttggtggcgtacgcctgtaatcccagctattcaggaggcggaggcaggagaatctcttgaatccaggagacggaggttgcagtgagccaagatcagaccactgctctccagcttgggcaacaagagcaaaactccatct-a-----------------aaaag-aaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938784 204 + 4267968 ccggctaacatggtgaaactccatctctgctaaaaatacaaaaaattagccgggcgtggtggcgtacccctgtaatcccagctattcaggaggcggaggcaggagaatctcttgaatccgggagacggaggttgcagtgagccaagatcagaccactgctctccagcttgggcaacaagagcaaaactccatct-a-----------------aaaagaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917047 198 - 2193130 ctggctaacatagtgaaactccatctttgctaaaaatacaaaaaattagccgggtgtggtggcatatgcctgtaatcccagctattcaggaggcggaggcaggagaatctcttgaatccaggaggcggaggttgcagtgagctaagatcagacccctgctctccagc-agggcaacaagagcaaaactccatct-a-----------------a-----aaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991335 221 - 77216781 ctggctaacatggtgaaactccatctctactaaaaacacaaaaaattagccgggcatggaggcgtatgcctgtaatcccacctattcaggaggctgaggcaggagaatctcttgaacccaggagtcggaggttgcagtgagccaagatcagaccactgctctccagcctgagcaacaggagcaaaactccatct-caaaaaaaaaaaaaaaaaaaaaaaaaa i rheMac8.chr16 C 0 I 5 s macFas5.chr16 27903938 221 - 80997621 ctggctaacatggtgaaactccatctctactaaaaacacaaaaaattagccgggcatggaggtgtatgcctgtaatcccacctattcaggaggctgaggcaggagaatctcttgaacccaggaggcggaggttgcagtgagccaagatcagaccactgctctccagcctgagcaacaggagcaaaactccatct-caaaaaaaaaaaaaaaaaaaaaaaaaa i macFas5.chr16 C 0 I 5 s macNem1.NW_012014910v1 1957426 204 + 10377808 ctggctaacatggtgaaactccatctctactaaaaacacaaaaaattagccgggcatggaggcgtatgcctgtaatcccacctattcaggaggctgaggcaggagaatctcttgaacccaggaggcggaggttgcagtgagccaagatcagaccactgctctccagcctgagcaacaggagcaaaactccatct-c-----------------aaaaaaaaa i macNem1.NW_012014910v1 C 0 I 5 s cerAty1.NW_012006043v1 1847030 198 - 8458610 ctggctaacatggtgaaactccatctctactaaaaacacaaaaaattagctgggcatggaggtgtatgcctgtaatcccacctattcag------gaggcaggagaatctcttgaacccaggaggtggaggttgcagtgagccaagatcagaccactgctctccagcctgagcaacaagagcaaaactccatct-c-----------------aaaaaaaaa i cerAty1.NW_012006043v1 C 0 I 248 s chlSab2.chr16 64803539 205 + 75148670 ctggctaacatggtgaaactccatctctactaaaaatacaaaaaattagccgggcatggtggcgtatgcctgtaatcccacctattcaggaggctgaggcaggagaatctcttgaacccaggaggtggaggttgcagtgagccaagatcagaccactgcactccagcctgggcaataagagcaaaactccatctac-----------------aaaaaaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015411 198 + 4244037 ctggctaacatggtgaaactccatctctactaaaaacacaaaaaattagctgggcatggaggtgtatgcctgtaatcccacctattcag------gaggcaggagaatctcttgaacccaggaggtggaggttgcagtgagccaagatcagaccactgctctccagcctgagcaacaagagcaaaactccatct-c-----------------aaaaaaaaa i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020134 195 - 159171411 ctggctaacatggtgaaactccacctctactaaaaacacaaaaaattagccaggcatggtggtgcgtgcctgtaatcccagctactcaggaggctgagacaggagaatcccttgaacccaggaggcggaggttgtagtgagccaagatcactcccctgctttccagcctgggcaataagagcaaaattctgtca-g-------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746375 195 + 3513951 ctggctaatgtggtgaaactccatctctactaaaaacacaaaaaattagccaggcatggtggtatatgcctgtaatcccagctactcaggaggctgagacaggagaatcccttgaacccaggaggtggaggttgtagtgaaccaagatcactcccctgctttccagcctgggcaataagagcaaaattctgtca-g-------------------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1795921 195 + 1920343 ctggctaacatggtgaaacttcatctctactaaaaacacaaaacattagccaggcgtggtggagtatgcctataatcccagctactcaggaggccgagacaggagaatcccttgaacccaggaggcggaggttgtagtgagccaagatcattcccctgctttccagtctgggcaataagagcaaaatcctgtca-g-------------------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6906944 195 - 7032639 ctggctaacatggtgaaactccatctctactaaaaacacaaaaaattagccaggcgtggtggcgtatgcctgtaatcccagctactcaggaggcctagacaggagaatcccttgaacccaggaggcggaggttgtagtgagccaagatcactcccctgctttccagcctgggcaataagagcaaaattctgtca-g-------------------------- i aotNan1.NW_018502359v1 C 0 C 0 e micMur3.chr16 35836446 1 - 65901067 I e dasNov3.JH570468 307812 23 - 852752 I e canFam3.chr9 21337391 7 + 61074082 I e otoGar3.GL873537 22720079 0 + 28711273 C e colAng1.NW_012122154v1 2055063 0 + 4569836 C a score=32217.000000 s hg38.chr17_GL383564v2_alt 2628 12 + 133151 gaaaaacaaaaa s panTro5.chr17 16196484 12 + 83181570 gaaaaacaaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103865 12 + 83442489 gaaaaacaaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3938988 12 + 4267968 gaaaaacaaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917245 12 - 2193130 aaaaaaaaaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991561 12 - 77216781 aaaaaagaaaga i rheMac8.chr16 I 5 C 0 s macFas5.chr16 27904164 12 - 80997621 aaaaaagaaaga i macFas5.chr16 I 5 C 0 s macNem1.NW_012014910v1 1957635 12 + 10377808 aaaaaagaaaga i macNem1.NW_012014910v1 I 5 C 0 s chlSab2.chr16 64803744 12 + 75148670 aaaaaagaaaga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2015609 12 + 4244037 aaaaaaaaaaaa i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020329 6 - 159171411 aaaaaa------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746570 5 + 3513951 -aaaaa------ i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796116 5 + 1920343 -aaaaa------ i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907139 4 - 7032639 --aaaa------ i aotNan1.NW_018502359v1 C 0 C 0 e micMur3.chr16 35836446 1 - 65901067 I e dasNov3.JH570468 307812 23 - 852752 I e canFam3.chr9 21337391 7 + 61074082 I e otoGar3.GL873537 22720079 0 + 28711273 C e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847228 248 - 8458610 I a score=12012.000000 s hg38.chr17_GL383564v2_alt 2640 2 + 133151 aa s panTro5.chr17 16196496 2 + 83181570 aa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103877 2 + 83442489 aa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939000 2 + 4267968 aa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917257 2 - 2193130 aa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991573 2 - 77216781 aa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904176 2 - 80997621 aa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957647 2 + 10377808 aa i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64803756 2 + 75148670 aa i chlSab2.chr16 C 0 I 4 s manLeu1.NW_012106252v1 2015621 2 + 4244037 aa i manLeu1.NW_012106252v1 C 0 T 6808 s micMur3.chr16 35836447 2 - 65901067 AA i micMur3.chr16 I 1 C 0 s otoGar3.GL873537 22720079 2 + 28711273 AA i otoGar3.GL873537 C 0 C 0 e dasNov3.JH570468 307812 23 - 852752 I e canFam3.chr9 21337391 7 + 61074082 I e aotNan1.NW_018502359v1 6907143 0 - 7032639 C e cebCap1.NW_016107730v1 1796121 0 + 1920343 C e saiBol1.JH378271 1746575 0 + 3513951 C e calJac3.chr5 46020335 0 - 159171411 C e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847228 248 - 8458610 I a score=40407.000000 s hg38.chr17_GL383564v2_alt 2642 6 + 133151 gaataa s panTro5.chr17 16196498 6 + 83181570 gaataa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103879 6 + 83442489 gaataa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939002 6 + 4267968 gaataa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917259 6 - 2193130 gaataa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991575 6 - 77216781 gaacaa i rheMac8.chr16 C 0 I 8 s macFas5.chr16 27904178 6 - 80997621 gaacaa i macFas5.chr16 C 0 I 8 s macNem1.NW_012014910v1 1957649 6 + 10377808 GAACAA i macNem1.NW_012014910v1 C 0 I 8 s chlSab2.chr16 64803762 6 + 75148670 gaataa i chlSab2.chr16 I 4 I 129 s manLeu1.NW_012106252v1 2008815 6 + 4244037 gaataa i manLeu1.NW_012106252v1 T 6808 I 8 s calJac3.chr5 46020335 6 - 159171411 aaaaaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746575 6 + 3513951 aaaaaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796121 6 + 1920343 ataaaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907143 6 - 7032639 aaaaaa i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836449 6 - 65901067 GAATAA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22720081 6 + 28711273 GAATTA i otoGar3.GL873537 C 0 C 0 e dasNov3.JH570468 307812 23 - 852752 I e canFam3.chr9 21337391 7 + 61074082 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847228 248 - 8458610 I a score=170789.000000 s hg38.chr17_GL383564v2_alt 2648 15 + 133151 aGCAGAATAATAATT s panTro5.chr17 16196504 15 + 83181570 aGCAGAATAATAATT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103885 15 + 83442489 aGCAGAATAATAATT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939008 15 + 4267968 aGCAGAATAATAATT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917265 15 - 2193130 aGCAGAATAATAATT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991589 15 - 77216781 AGCAGAATAATAATT i rheMac8.chr16 I 8 C 0 s macFas5.chr16 27904192 15 - 80997621 AGCAGAATAATAATT i macFas5.chr16 I 8 C 0 s macNem1.NW_012014910v1 1957663 15 + 10377808 AGCAGAATAATAATT i macNem1.NW_012014910v1 I 8 C 0 s cerAty1.NW_012006043v1 1847476 15 - 8458610 AGCAGAATAATAATT i cerAty1.NW_012006043v1 I 248 C 0 s chlSab2.chr16 64803897 15 + 75148670 agcagaataataatt i chlSab2.chr16 I 129 C 0 s manLeu1.NW_012106252v1 2008829 15 + 4244037 AGCAGAATAATAATT i manLeu1.NW_012106252v1 I 8 C 0 s calJac3.chr5 46020341 15 - 159171411 GGCAGAATAATAATT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746581 15 + 3513951 gacagaataataatt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796127 15 + 1920343 GGCAGAATAATAATT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907149 15 - 7032639 GGCAGAATAATAATT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836455 15 - 65901067 AACAGAATAATAATT i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22720087 15 + 28711273 AACAGAAAAAGAATT i otoGar3.GL873537 C 0 C 0 e dasNov3.JH570468 307812 23 - 852752 I e canFam3.chr9 21337391 7 + 61074082 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C a score=1452050.000000 s hg38.chr17_GL383564v2_alt 2663 145 + 133151 TAAAAA--TACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAACGGTGAC--TTTTTTTTTTTTTTCAAAGCCTTCTGAGGTGGACTTTTGAAATGATA------------------------------AAGGTGTTTTGGGTTATC s panTro5.chr17 16196519 142 + 83181570 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAACGGTGAC--TTTTTTTCCC----CAAAGCCTTCTGAGGTGGACTTTTGAAATGATA------------------------------AAGGTGTTTTGGGGTATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16103900 142 + 83442489 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAACGGTGAC--TTTTTTTCCC----CAAAGCCTTCTGAGGTGGACTTTTGAAATGATA------------------------------AAGGTGTTTTGGGGTATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939023 142 + 4267968 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAACGGTGAC--TTTTTTTTTT----CAAAGCCTTCTGAGGTGGACTTTTGAAATGATA------------------------------AAGATGTTTTGGGGTATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917280 145 - 2193130 TAAAAAAATACTTAAAATTAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAATGGTGAC--TTTTTTTTTT--TTCAAAGCCTACTGAGGTGGACTTTTGAAATGATA------------------------------AAGGTGTTTCGGGGTATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991604 148 - 77216781 TAAAAA-GTACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAATAGTGACTTTTTTTTTTTTGTTTCAAAGCCTGCTGAGGTGGACTTCTGAAATCATA------------------------------AAGGTGTTTTGGGGTATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904207 148 - 80997621 TAAAAA-GTACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAATAGTGACTTTTTTTTTTTTGTTTCAAAGCCTGCTGAGGTGGACTTCTGAAATCATA------------------------------AAGGTGTTTTGGGGTATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957678 147 + 10377808 TAAAAA-GTACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAATAGTGAC-TTTTTTTTTTTGTTTCAAAGCCTGCTGAGGTGGACTTCTGAAATCATA------------------------------AAGGTGTTTTGGGGTATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1847491 141 - 8458610 TAAAAA--TACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTAGAAATCCTATTGGATAGGAAAGAAAGTAGTGAC-----TTTTTTTGTTTCAAGCCTT--TGAGGTGGACTTTTGAAATCATA------------------------------AAGCTGTTTCGGGGTATC i cerAty1.NW_012006043v1 C 0 I 966 s chlSab2.chr16 64803912 145 + 75148670 taaaaa-atacttaaaatcaaaccaaagtttcccaagtaact--------------------------------------agattTTA-AAATCCTATTTAATAGAAAAGAAAATAGTGAC---TCTTTTTTTGTTTCAAAGCCTGCTGAGGTGGACTTTTGAAATCATA------------------------------AAGGTTTTTCGGGGTATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2008844 145 + 4244037 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTGAATAGAAAAGAAAGTAGTGAC---TTTTTTTTTGTTTCAAAGCCTTATGAGGTGGACTTTTGAAATCATA------------------------------AAGGTGTTTCGGGGTATC i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020356 141 - 159171411 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-ATATCCTACTTAATAGAAAAGAAAATGGTGAC---TTTTT----CCCCCAAAGCCTGCTGAGGTGGACTTTTGAAATCACA------------------------------AAAATGTTTCGGGGTATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746596 181 + 3513951 taaaaa-aTACTAAAAATCAAACCAAAGTTTCCCAAGTAACTTTGGAGCATGCCTAAGGAGCATGCTCCAAAGTTTTTAAAGATTTTA-AAATGCAATTTAATAGAAAAGAAAATGGTGAC---TTTTT--TCCCCCCAAAGCCTGCTGAGGTGGACTTTTGAAATCACA------------------------------AAAGTATTTCGGGGTATC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796142 145 + 1920343 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCCCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAATGGTGAC---CTTTTTTTCCCCCCAAAGCCTGCTGAGGTGGACTTTTGAAATCACA------------------------------AAAGTGTTTCGGGGTATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907164 145 - 7032639 TAAAAA-ATACTTAAAATCAAACCAAAGTTTCTCAAGTAACT--------------------------------------AGATTTTA-AAATCCTATTTAATAGAAAAGAAAATGGTGAC---TTTTTTTTTCCCCCAAAGCCTGCTGAGGTGGACTTTTGAAATCACA------------------------------AAAGTGTTTCGGGGTATC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836470 138 - 65901067 T-AAAA-ATACTTAAAATCAAACCAAAGTTTCTCAAGTAACT--------------------------------------AGAATTCA-AACTCTTATTTAATAGAAGAGAAAATGGTGAC--TTT--TTTTT----CAAAGCCTATTGTGGTGGA-TTTTGAAATCATA------------------------------AAGATTTTTCAGGGTGTC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22720102 118 + 28711273 TAAAAA-ATCCTTAAAACCAAACCAAAGTTTCACAAGTAACT--------------------------------------AGACTTTA-AAATCCTATTTAACAGAAGAGAAAATGGCAGC--TTTTGTTTTT----CAAAGCCTGTTGTGGTGAA-TTTTGAAA----------------------------------------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337398 144 + 61074082 -TAAAG-ACCCTTAAAATCAGACTAAAGATTTCTAAGAAATC--------------------------------------ATATCATA-AAATCCCACCTAATAGAGAAGATGATGTCAGC---TTTCTGTCTTTTTCAAAGCTTCTCAACGTGGACTCTTGAGATCACA------------------------------AAGAACCCTGAGGATGTC i canFam3.chr9 I 7 C 0 s dasNov3.JH570468 307835 151 - 852752 -----------------------TAAAAATTCTCAAG-AATG--------------------------------------AAATTGTA-AAATCCCATTTCATAGAAAAGCAAATGGTGAC----TTTTCCTTTCTTCAATTCTACCTGAGCTGGACTTTTGAAACCACATATTTTATTTCCTGCTTGGCTTCTTTCCTGAAGTTTTTTTTGGATGTT i dasNov3.JH570468 I 23 C 0 e colAng1.NW_012122154v1 2055063 0 + 4569836 C a score=558451.000000 s hg38.chr17_GL383564v2_alt 2808 55 + 133151 CTTCCTCAGACTCTGTT---TTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG s panTro5.chr17 16196661 55 + 83181570 CTTCCTCAGACTCTGTT---TTCACCCAGCAAGTCTGAGAGCCTTGCAGGCACAGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104042 55 + 83442489 CTTCCTCAGACTCTGTT---TTCACCCAGCAAGTCTGAGAGCCTTGCAGGCACAGTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939165 55 + 4267968 CTTCCTCAGACTCTGTT---TTCACCCAGCAAGTCTGAGAGCCTTGCAGGCACAGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917425 55 - 2193130 CTTCCTCAGACTCTGTT---TTCACCCAGCAAGTCTGAGAGCCTTGCAGGCACAGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991752 55 - 77216781 CTTCCTCAGACTCTGTT---CTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904355 55 - 80997621 CTTCCTCAGACTCTGTT---CTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957825 55 + 10377808 CTTCCTCAGACTCTGTT---CTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804057 55 + 75148670 CTTCCTCAAACTCTGTT---CTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2008989 55 + 4244037 CTTCCTCAGACTCTGTT---CTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020497 58 - 159171411 CTTCCTCAGACTCCGTTCTCCTCACCCAGCACGTCTGAGAGCCTTGCAGGCACAGTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746777 58 + 3513951 CTTCCTCAGACTCCATTCTCCTCACCCAGCACGTCTGAGAGCCTTGCAGGCACAGTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796287 58 + 1920343 CTTCCTCAGACTTCGTTCTCCTCACCCAGCATGTCTGAGAGCCTCGTAGGCACAGTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907309 58 - 7032639 CTTCCTCTGACTCCGTTCTCCTCACCCAGCATGTCTGAGAGCCTTGCAGGCACAGTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836608 58 - 65901067 CTTCCTCACACTCTGCTCTCCTTGCCCAGCATGTTTGAGAGCCCTGTGGGCCCAGCTG i micMur3.chr16 C 0 I 58 s otoGar3.GL873537 22720220 57 + 28711273 -CTCCTTGGACTCTGTTCTCCTTGCCGAGCATGTCTGAGAGCCTTGTAGACATATCTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337542 57 + 61074082 AGTCGTGGAACCCCTGTCTCCTTGCCCAGAGCATCTGAGGGTA-TACAGGCACAGCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 307986 58 - 852752 CTCCCTTGAATGCTAATCTCTTGGCCCAGCATGGCCGAGGGCATCACATGCACAGCTC i dasNov3.JH570468 C 0 C 0 e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=451189.000000 s hg38.chr17_GL383564v2_alt 2863 58 + 133151 TATCAGGACACACTGCTGGTCGT-GGTTTGCAGATGTTT-TCCTGGCG-TAA--TTCACATCA s panTro5.chr17 16196716 58 + 83181570 TATCAGGACACACTGCTGGTCGT-GGTTTGCAGATGTTT-TCCTGGCG-TAA--TTCACATCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104097 58 + 83442489 TATCAGGACACACTGCTGGTCGT-GGTTTGCAGATGTTT-TCCTGGTG-TAA--TTCACATCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939220 58 + 4267968 TATCAGGACACACTGCTGCTCAT-GGTTTGCAGATGTTT-TCCTGGCG-TAA--TTCACATCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917480 58 - 2193130 TATCAGGACATACCGCTGGTCGT-GGTTTGCAGATGTTT-TCCCGGCA-TAA--TTCACATCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991807 57 - 77216781 TATCAGGACATACC-CTGGTCGT-GGTTTGCAGGTGTTT-TCCTGGCA-TAA--TTCACATCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904410 57 - 80997621 TATCAGGACATACC-CTGGTCGT-GGTTTGCAGGTGTTT-TCCTGGCG-TAA--TTCACATCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957880 57 + 10377808 TATCAGGACATACC-CTGGTCGT-GGTTTGCAGGTGTTT-TCCTGGCG-TAA--TTCACATCA i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804112 58 + 75148670 TATCAGGACACCCC-CTGGTCGT-GGTTTGCAGGTGTTT-TCCTGGCGTTAA--TTCACATCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009044 58 + 4244037 TATCAGGACACACC-CTGGTCGT-GGTTTGCAGGTGTTT-TCCTGGCGTTAA--TTCACATCA i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020555 58 - 159171411 CACCAGGACAGACCGCTTGTCGT-GGTTTGCAGATGTTT-TTCCGGTG-TAA--TTCACATCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746835 58 + 3513951 CACCAGGACAGACCGCTCGTCGT-GGTTTGCAGATGTCT-TCCTGGTG-TAA--TTCACATCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796345 58 + 1920343 CACCAGGACAGACTGCTTGTCGT-GGTTTGCAGATGTTT-TCCTGGTG-TAA--TTCACATCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907367 58 - 7032639 CACCAGGACAGACCGCTTGTAGT-GGTTTGCAGATGTTT-TTCTGGTG-TAA--TTCACATCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22720277 58 + 28711273 GTCCAGAATGGACCACTTGTTAT--ATTTGCAACTGTTT-TCCTGGTA-TAAGCTACACATC- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337599 58 + 61074082 TGCCAGGAGGGATCACCTGTTGT-GGTCTGTCAACCTCT-TCCTGGTG-CAA--CACACGCAG i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 308044 60 - 852752 TACCAGGATGGACCATCTTTTGCAAGTTTGGAAGTTTTTCCCCCATTG-CAA--CACACACCA i dasNov3.JH570468 C 0 I 1 e micMur3.chr16 35836666 58 - 65901067 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=1497178.000000 s hg38.chr17_GL383564v2_alt 2921 143 + 133151 GGATGCAGTGTGTGGGCAGCTCCTGTTTCCTTAGGTGTCTTCAGAATTTTTCCTCTGCAGCTGGAGCAGGTGGTTGCAGATTAGACTCACACCCTGTGGACCGC-CCAGTGCCTCTGC-TTCTGTCTCACTCAGAGATGCGTCAG s panTro5.chr17 16196774 143 + 83181570 GGATGCAGTGTGTGGGCAGCTCCTGTTTCCTTAGGTGTCTTCAGAATTTTTCCTCTGCAGCTGGAGCAGGTGGTTGCAGATTAGACTCACACCTTGTGGACCGC-CCAGTGCCTCTGC-TTCTGTCTCACTCAGAGATGCGTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104155 143 + 83442489 GGATGCAGTGTGTGGGCAGCTCCTGTTTCCTTAGGTGTCTTCAGAATTTTTCCTCTGCAGCTGGAGCAGGTGGTTGCAGATTAGACTCACACCCTGTGGACCGC-CCAGTGCCTCTGC-TTCTGTCTCACTCAGAGATGCGTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939278 143 + 4267968 GGATGCAGTGTGTGGGCAGCTCCTGTTTCCTTAGGTGTCTTCAGAATTTTTCCTCTGCATCTGGAGCAGGTGGTTGCAGATTAGACTCACACCCTGTGGGCCGC-CCAGTGCCTCTGC-TTCTGTCTCACTCAGAGATGCGTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917538 143 - 2193130 GGATGTGGTATGTGGGCAGCCCCTGTTTCCTTAGGTGTCTTCAGAATTTTTCCTCTGCAGCTGGAGCAGGTAGTTGCAGATTAGACTCACACCCTGTGGGCCAC-CCAGTGCCTCTGC-TTCTCTCTCACTCAGAGATGCGTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29991864 143 - 77216781 GGATGCGGTGTGTGGGTAGCCCCTGTTTCCTTAGGTGTCTTTGGAATCTTTCCCCTGCAGCTGGAGCAGGTGGCTGCAGATTAGACTCACACCCTGTGGGCCGC-CCAGTGCCTCTGC-TTCTCTCTCACTCAGAGATGCGTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904467 143 - 80997621 GGATGCGGTGTGTGGGTAGCCCCTGTTTCCTTAGGTGTCTTTGGAATCTTTCCCCTGCAGCTGGAGCAGGTGGCTGCAGATTAGACTCACACCCTGTGGGCCGC-CCAGTGCCTCTGC-TTCTCTCTCACTCAGAGATGCGTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1957937 143 + 10377808 GGATGCGGTGTGTGGGTAGCCCCTGTTTCCTTAGGTGTCTTTGGAATCTTTCCCCTGCAGCTGGAGCAGGTGGCTGCAGATCAGACTCACACCCTGTGGGCCGC-CCAGTGCCTCTGC-TTCTCTCTCACTCAGAGATGCGTCAG i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804170 143 + 75148670 GGATGCGGTGTGTGGGTAGCCCCTGTTTCCTTAGGTGTCTTCAGAATTTTTCCCCTGCAGCTGGAGCAGGTGGCTGCAGATTAGACTCACACCCTGTGGGCCGC-CCAGTACCTCTGC-TTCTTTCTCACTCAGAGATGCGTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009102 143 + 4244037 GGATGCGGTGTGTGGGTAGCCCTTGTTTCCTTAGGTGTCTTCAGAATTTTTCCCCTGCAGCTGGAGCAGGTGGCTGCAGATCAGACTCACACCCTGTGGGCCGC-CCAGTGCCTCTGC-TTCTCTCTCACTCAGAGATGCGTCAG i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020613 142 - 159171411 GGATGTGGTGTGT-GGCAACCCCTGTTTCCTTAGGTGTTTTCAGAATTTCCCTCCTGCAGCTGGAGCAGGTGCCTGCAGATTAGACTCACACCCTGTGGGCCGT-CCAGTGGCTCTGC-TTCTCTCTCACTCAGAGATGTGTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1746893 143 + 3513951 GGATGTGGTGTGTGGGCAGCCCCTGTCTCCTTAGGTGTCTTCAGAATTTCCCTCCTGCAGCTGGAGCAGGGGGCTGCAGATTAGACTCACACCCTGAGGGCCGT-CCAGTGGCTCTGC-TTCGCTCTCACTCAGAGATGTGTCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796403 143 + 1920343 GGATGTGGTGTGTGGGCAGCCCCTGTTTCCTTAGGTGTCTTCAGAATTTCCCTCCTGCAGCTGGAGCAGGTGGCTGCAGATTAGACTCACACCCTATGGGCCGT-CCAGTGGCTCTGC-TTCTCTGTCACTCAGAGATGTGTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907425 143 - 7032639 GGATGTGGTGTGTGGGCAGCCCCTGTTTCCTTAGGTGTCTTCAGAATTTCCCTCCTGCAGCTGGAGCAGGTGGCTATGGATTAGACTCACACCCTGTGGGCCGT-CCAGTGGCTCTGC-TTCTCTCTCACTCAGAGATGTGTCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836724 143 - 65901067 GGATGCTGTGAGTGGGCAGCACCTGGTTCCTTAGGTATCTTCAGAATTTGTCCCCTGCAGCTAGCTGGGGTCGCTGCAGATTAGACTGACACCCTGTGGGCTGCTCCAATGCCTCTGC-TTCC-TCTCACTCAGAGATGCCTCAG i micMur3.chr16 I 58 I 94 s otoGar3.GL873537 22720335 137 + 28711273 GGATGCTGTGGGTGAGCAGTGTTTGTTTCCTGAGATATCTTCAGAATCC-CCCCCTGCAGCTTATGGGGGTAGCTGCAGACTAGACTCAAACCCTGCAGGCTGCTCTATTTCCTCTGT-TCCC------CTCTGAGATGCATCAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337658 144 + 61074082 GAATGCTGTGTGTGGACAGTGCCTGCTTTCTTAGACACTCTCAGAATCTCCCCCTTGCAACAGGTA-AAATGGCTGCAGACCAGACCCGAATCCCATGGGCTACTCCGACTTCACTGCTTTCTTTTTCACACAGAGTTGTCTCAG i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 308105 135 - 852752 GGATGCTGTGGGTGGGCAGGACATGCTTCTTTAGATGCCTTCAGCAACT-CCTCCTCCAGCTTGATATGGTACCTGCAGATTAGACTCA---------AGCTGCTCCAACTCCACTGCTTTCTCTCTCACTTGGAGATGCATCAG i dasNov3.JH570468 I 1 C 0 e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=797987.000000 s hg38.chr17_GL383564v2_alt 3064 113 + 133151 AACGGTCAGACTCAGAGATGCGTCT-GCACCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTTTCCCCTCT-GCCTGAAGAGAGATTACAGCTCAAAATCTTTTAATCCTCA s panTro5.chr17 16196917 113 + 83181570 AACGGTCAGACTCAGAGATGCGTCT-GCACCATGGCACCAAGTGATGCTGTTCTGAACCCAGTGTTTCCCCTCT-GCCTGAAGAGAGATTACAGCTCAAAATCTTTTAATCCTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104298 113 + 83442489 AACGGTCAGACTCAGAGATGCGTCT-GCACCATGGCACCAAGTGATGCTGTTCTGAACCCAGTGTTTCCCCTCT-GCCTGAAGAGAGATTACAGCTCAAAATCTTTTAATCCTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939421 113 + 4267968 AACGGTCAGACTCAGAGATGCGTCT-GCACCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTTTCCCCTCT-GCCTGAAGACAGATTACAGCTCAAAATCTTTTAATCCTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917681 113 - 2193130 AACGGTCAAACTCAGAGATGCGTCT-GCACCGTGGCACCAAGTGATGCTCTTCTGAACCCAGTGTTTCCCCTCT-GCCTGAAGACAGATTACAGTTCAAAATCTTTCACTCCTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992007 105 - 77216781 AACGGT----CTCTGAG----TTCT-GTGCCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTCTCCCCTCT-GCCTGAAGACAGATTATAGCTCAAAATCTCTTACTCCTTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904610 105 - 80997621 AACGGT----CTCTGAG----TTCT-GTGCCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTCTCCCCTCT-GCCTGAAGACAGATTATAGCTCAAAATCTCTTACTCCTTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958080 105 + 10377808 AACGGT----CTCTGAG----TTCT-GTGCCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTCTCCCCTCT-GCCTGAAGACAGATTATAGCTCAAAATCTCTTACTCCTTA i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804313 105 + 75148670 AACGGT----CTCTGAG----TTCT-GCGCCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTCTCCCCTCT-GCCTGAAGACAGATTATAGCTCAAAATCTTTTACTCCTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009245 105 + 4244037 AACAGT----CTCTGAG----TTCT-GCGCCGTGGCACCAAGTGATGCTGTTCTGAACCCAGTGTCTCCCCTCT-GCCTGAAGACAGATTATAGCTCAAAATCTTTTACTCCTTA i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020755 104 - 159171411 AACGGT----CTCTGAG----TTCT-GCACCATGGCACCAAGTCATGCTGTTCTGGATCCAGTGTCTCCCCTCT-GCCTGAAGACAGACTACAGCTCAAAAACT-TTACTCCTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747036 104 + 3513951 AACGGT----CTCTGAG----TTCT-GCACCACGGCACCAAGTCATGCTGTTCTGGATCCAGTGTCTCCCCTCT-GCCTGAAGACAGACTACAGCTCAAAAACT-TTACTCCTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796546 104 + 1920343 AACGGT----CTCTGAG----TTCT-GCACCATGGCACCGAGTCATGCTGTTCTGGATCCAGTGTCTCCCCTCT-GCCTGAAGACAGACTACCGCTCAAAAGCT-TTACTCCTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907568 104 - 7032639 AACGGT----CTCTGAG----TTCT-GCACCATGGCACCAAGTCATGCTGTTCTGCATCCAGTGTCTCCCTTCT-GCCTGAAGAGAGACTACAGCTCAAAAACT-TTACTCCTGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22720472 94 + 28711273 -------TAACTCCCAA----------CACTGTGACATTGAACAATGCTATTCTGGGGTTCATATCCTCTCTCC--CCTGCAGATAGATTACAGCTGGAAACTT-TGACCCCTA- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337802 89 + 61074082 ------------TAGGT----CCCA-ATATCATGGCATTGAATGATGCTGTTCTGGACTCAGTGT-----CCAG-AACTGAAGACAAACTGCAAATCCAAAACTTTGACTCC--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308240 96 - 852752 -------------TATG----TCCTAACACCATGGCACTGAGTGATGCTGTTCTGGACC--ATGTCCCATCTCTCACGTGAAGGTAGACTGCAGCTCCAAAGTGTTTACTTCTGA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35836867 94 - 65901067 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=12376.000000 s hg38.chr17_GL383564v2_alt 3177 1 + 133151 A s panTro5.chr17 16197030 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104411 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939534 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917794 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992112 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904715 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958185 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804418 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009350 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020859 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747140 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796650 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907672 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836961 1 - 65901067 A i micMur3.chr16 I 94 C 0 s otoGar3.GL873537 22720566 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 308336 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21337891 0 + 61074082 C e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=655752.000000 s hg38.chr17_GL383564v2_alt 3178 62 + 133151 GAGAGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTGTCTTCTCTCTT s panTro5.chr17 16197031 62 + 83181570 GAGAGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTGTCTTCTCTCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104412 62 + 83442489 GAGAGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTGTCTTCTCTCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939535 62 + 4267968 GAGAGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTGTCTTCTCTCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917795 60 - 2193130 GAAAGAAGAGGAGGCCCCTGTGAAGGAAGGCAGGCTGCAGGACTACCTC--TCTTCTCTCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992113 60 - 77216781 G--AGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTCTCTTCTCTCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904716 60 - 80997621 G--AGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTCTCTTCTCTCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958186 60 + 10377808 G--AGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTCTCTTCTCTCTT i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804419 60 + 75148670 G--AGAAGAGGTGGCCTCTGTGAAGGAAGGAGGGCTGCAGGACGACCTCTCTCTTCTCTCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009351 60 + 4244037 G--AGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTCTCTTCTCTCTT i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020860 61 - 159171411 GAGAGAAGTGGTGGCCCCTGTGAAGGAAGGA-GGCTGTAGGACTACCTCTCTCTTCTCTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747141 62 + 3513951 GAGAGAAGAGGTGGCCCCCGTGAAGGAAGGAGGGCTGCAGGACTTCCTCTCTCTTCTCTCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796651 61 + 1920343 AAGAGAAGA-GTGGCCCCTGTGAAGGAAGGAGAGCTGCAGGACTACCTCTCTCTTCTCTCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907673 62 - 7032639 GAGAGAAGAGGTGGCCCCTGTGAAGGAAGGAGGGCTGCAGGACTACCTCTCTCTTCTCTCTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35836962 61 - 65901067 GAGAGAAGAGGTGGCCCCTGCGAATGAAGGGGG-CTGCAGGGCTACCTCTCTCCTCTCTCTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2918645 62 + 8555354 GAGAGAGGAGGTGGCCCCTGTGGACGAAGGGGGCCTGTAGGACTACCTTTCTCCTCTCTCTT i proCoq1.NW_012135969v1 N 0 I 44 s otoGar3.GL873537 22720567 44 + 28711273 GAGAAAAGAGGTGGCCCCTGTGAATGAAGGAA-----------TACCTCACTGTG------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337891 56 + 61074082 ---ATCTGCGATGGCCCCTGTGAAT---GGAGGGCTGCTGGAGTTCATCACTCTTCATGCTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308337 51 - 852752 GAGTGAAGAGGTGGCCCGTATAAATGAAGGCAGGCTGCAGGATGACCTCtg----------- i dasNov3.JH570468 C 0 C 0 e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=50632.000000 s hg38.chr17_GL383564v2_alt 3240 6 + 133151 CATCTC s panTro5.chr17 16197093 6 + 83181570 CATCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104474 6 + 83442489 CATCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939597 6 + 4267968 CATCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917855 6 - 2193130 CATCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992173 6 - 77216781 CATTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904776 6 - 80997621 CATTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958246 6 + 10377808 CATTTC i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804479 6 + 75148670 CATTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009411 6 + 4244037 CATTTC i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020921 6 - 159171411 CACCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747203 6 + 3513951 CATCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796712 6 + 1920343 CATCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907735 6 - 7032639 CATCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837023 6 - 65901067 CGTCTC i micMur3.chr16 C 0 I 112 s otoGar3.GL873537 22720611 6 + 28711273 TGTCTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337947 6 + 61074082 CATCTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308388 1 - 852752 -a---- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2918707 44 + 8555354 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=247498.000000 s hg38.chr17_GL383564v2_alt 3246 40 + 133151 TGATACCTCCCTTCATGCAACTTGGAATATATGTTTATTT s panTro5.chr17 16197099 40 + 83181570 TGATACTTCCCTTCATGCAACTTGGAATACATGTTTATTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104480 40 + 83442489 TGATACTTCCCTTCATGCAACTTGGAATATATGTTTATTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939603 40 + 4267968 TGATACTTCCCTTCATGCAACTTGGAATATATGTTTATTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917861 40 - 2193130 TGATACTTCCCTTCACGCAACGTGGCATACATGCTTGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992179 40 - 77216781 TGATACTTCCCTTCATACAACTTGGCATATATGTTTGTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904782 40 - 80997621 TGATACTTCCCTTCATACAACTTGGCATATATGTTTGTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958252 40 + 10377808 TGATACTTCCCTTCATACAACTTGGCATATATGTTTGTTT i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804485 40 + 75148670 TGATACTTCCCTTCATACAACTTGGCATATATGTTTGTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009417 40 + 4244037 TGATACTTCCCTTCATATAACTTGGCATATATGTTTGTTT i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020927 38 - 159171411 TAATACTTCCCTTCATGCAACTTGG--TGCACGTTTGTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747209 38 + 3513951 TAATACTTCCCTTCATGCAACTTGG--TACACGTTTGTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1796718 38 + 1920343 TAATACTTCCTTTCATGCAACTTGA--TGCATGTTTGTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6907741 38 - 7032639 TAATACTTCCCTTCATGCAACTTGG--TGCATGTTTGTTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22720617 24 + 28711273 CAGTACTACCCTTCGTGTGACTTG---------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337953 9 + 61074082 CAGGACTTC------------------------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308389 38 - 852752 tggt--ctggagttatgtacccagaaagacatgttcttaa i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2918707 44 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=177819.000000 s hg38.chr17_GL383564v2_alt 3286 22 + 133151 TCAGGGGCC----------AGAAACTCTTTTT--------------- s panTro5.chr17 16197139 22 + 83181570 TCAGGGGCC----------AGAAACTCTTTTT--------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104520 22 + 83442489 TCAGGGGCC----------AGAAACTCTTTTT--------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939643 22 + 4267968 TCAGGGGCC----------AGAAACTCTTTTT--------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917901 22 - 2193130 TCAGGGGCC----------GGGAACTCTTTTT--------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992219 22 - 77216781 TCAGGGGCC----------AGGAGCTCTTTTT--------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904822 22 - 80997621 TCAGGGGCC----------AGGAGCTCTTTTT--------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958292 22 + 10377808 TCAGGGGCC----------AGGAGCTCTTTTT--------------- i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804525 22 + 75148670 TCAGGGGCC----------AGGAGCTCTTTTT--------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009457 22 + 4244037 TCAGGGGCC----------AGGAGCTCTTTTT--------------- i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020965 22 - 159171411 TCAGGGGCC----------AGGAACTCTTTTT--------------- i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1747247 22 + 3513951 TCAGGGGCC----------AGGAACTCTTTTT--------------- i saiBol1.JH378271 C 0 I 448 s cebCap1.NW_016107730v1 1796756 22 + 1920343 TCAGGGGCC----------AGGAACTCTTTTT--------------- i cebCap1.NW_016107730v1 C 0 I 458 s aotNan1.NW_018502359v1 6907779 22 - 7032639 TCAGGGGCC----------AGGAACTCTTTTT--------------- i aotNan1.NW_018502359v1 C 0 I 447 s proCoq1.NW_012135969v1 2918751 22 + 8555354 TCAGGGACC----------AGGAACTCCTTTT--------------- i proCoq1.NW_012135969v1 I 44 C 0 s canFam3.chr9 21337962 3 + 61074082 -----------------------------TTT--------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308427 47 - 852752 tcatgagaccactgtagatagaatcttttgatgtggttacttctgtt i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35837029 112 - 65901067 I e otoGar3.GL873537 22720641 0 + 28711273 C e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=20147.000000 s hg38.chr17_GL383564v2_alt 3308 5 + 133151 AAAGA s panTro5.chr17 16197161 5 + 83181570 AAAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104542 5 + 83442489 AAAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939665 5 + 4267968 AAAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917923 5 - 2193130 AAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992241 5 - 77216781 AAAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904844 5 - 80997621 AAAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958314 5 + 10377808 AAAGA i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804547 5 + 75148670 AAAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009479 5 + 4244037 AAAGA i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46020988 4 - 159171411 AAAA- i calJac3.chr5 I 1 I 439 s proCoq1.NW_012135969v1 2918773 5 + 8555354 AAAGG i proCoq1.NW_012135969v1 C 0 C 0 s canFam3.chr9 21337965 2 + 61074082 -AA-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308474 5 - 852752 aagga i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35837029 112 - 65901067 I e otoGar3.GL873537 22720641 0 + 28711273 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=56364.000000 s hg38.chr17_GL383564v2_alt 3313 11 + 133151 --GGAGCAAGAGg s panTro5.chr17 16197166 11 + 83181570 --GGAGCAAGAGg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104547 11 + 83442489 --GGAGCAAGAGg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939670 11 + 4267968 --GGAGCAAGAGg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917928 11 - 2193130 --GGAGCAAGAGg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992246 11 - 77216781 --GGAGCAAAAGg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904849 11 - 80997621 --GGAGCAAAAGg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958319 11 + 10377808 --GGAGCAAAAGg i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804552 11 + 75148670 --GGAGCAAAAGg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009484 11 + 4244037 --GGAGCAAAAGg i manLeu1.NW_012106252v1 C 0 C 0 s proCoq1.NW_012135969v1 2918778 11 + 8555354 --GGAGCAAGAGG i proCoq1.NW_012135969v1 C 0 I 19 s dasNov3.JH570468 308479 13 - 852752 gtggcccaagtga i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35837029 112 - 65901067 I e canFam3.chr9 21337967 0 + 61074082 C e otoGar3.GL873537 22720641 0 + 28711273 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=70296.000000 s hg38.chr17_GL383564v2_alt 3324 21 + 133151 gccgggcacggtggctcatgc s panTro5.chr17 16197177 21 + 83181570 gccgggcacggtggctcatgc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104558 21 + 83442489 gccgggcacggtggctcatgc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939681 21 + 4267968 gccgggcacggtggctcatgc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917939 21 - 2193130 gccgggcacggtggctcacgc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992257 21 - 77216781 gctgggtgcagtggctcaagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904860 21 - 80997621 gctgggtgcagtggctcaagc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958330 21 + 10377808 gctgggtgcagtggctcaagc i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804563 21 + 75148670 gccgggtgcagtggctcaagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009495 21 + 4244037 gccaggtgcagtggctcaagc i manLeu1.NW_012106252v1 C 0 C 0 s otoGar3.GL873537 22720641 9 + 28711273 ------------GGCTCCTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21337967 17 + 61074082 ----GGCAACCTGGCTCATAC i canFam3.chr9 C 0 I 38 s dasNov3.JH570468 308492 12 - 852752 atcaggataggt--------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=101196.000000 s hg38.chr17_GL383564v2_alt 3345 26 + 133151 ctgtaatcccagcactttgggaggct s panTro5.chr17 16197198 26 + 83181570 ctgtaatcccagcactttgggaggct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104579 26 + 83442489 ctgtaatgccagcactttgggaggct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939702 26 + 4267968 ctgtaatcccagcactttgggaggct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917960 26 - 2193130 ttgtaatcccagcactttgggaggct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992278 26 - 77216781 ttgtaatcccagcactttgggaggct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904881 26 - 80997621 ttgtaatcccagcactttgggaggct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958351 26 + 10377808 ttgtaatcccagcactttgggaggct i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804584 26 + 75148670 ttgtaatcccagcactttgggaggct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009516 26 + 4244037 ttgtaatcccagcactttgggaggct i manLeu1.NW_012106252v1 C 0 C 0 s otoGar3.GL873537 22720650 2 + 28711273 CT------------------------ i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 308504 25 - 852752 -cttaattccattacttgctgtggcc i dasNov3.JH570468 C 0 I 326 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e canFam3.chr9 21337984 38 + 61074082 I e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=156708.000000 s hg38.chr17_GL383564v2_alt 3371 39 + 133151 gaggtgggtggatcacgaggtcaggagttcaagaccagt s panTro5.chr17 16197224 39 + 83181570 gaggtgggtggatcacgaggtcaggagttcaagaccagt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104605 39 + 83442489 gaggtggatggatcacgaggtcaggagttcaagaccagt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939728 39 + 4267968 gaggtgggtggatcatgaggtcaggagttcgagaccagt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1917986 39 - 2193130 gaggtgggtggatcacgaggtcaggagttcgagactagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992304 39 - 77216781 gaggtgggtggatcacgaggtcaggagttcgagaccagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904907 39 - 80997621 gaggtgggtggatcacgaggtcaggagttcgagaccagc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958377 39 + 10377808 gaggtgggtggatcacgaggtcaggagttcgagaccagc i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804610 39 + 75148670 gaggtgggtggatcacaaggtcaggagttcgagaccagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009542 39 + 4244037 gaggtgcgtggatcacgaggtcaggagttcgagaccagc i manLeu1.NW_012106252v1 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e dasNov3.JH570468 308529 326 - 852752 I e canFam3.chr9 21337984 38 + 61074082 I e otoGar3.GL873537 22720652 0 + 28711273 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e colAng1.NW_012122154v1 2055063 0 + 4569836 C e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=288715.000000 s hg38.chr17_GL383564v2_alt 3410 61 + 133151 ctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtgg s panTro5.chr17 16197263 61 + 83181570 ctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104644 61 + 83442489 ctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggtgtggtgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939767 61 + 4267968 ctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagctgggtgtggtgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918025 61 - 2193130 ctggccaacatggtgaaaccccctctctactaaaaatacaaaaattagctgggtgtggtgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992343 61 - 77216781 ctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27904946 61 - 80997621 ctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958416 61 + 10377808 ctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtgg i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804649 61 + 75148670 ctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctaggtgtggtgg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2009581 61 + 4244037 ctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtgg i manLeu1.NW_012106252v1 C 0 I 7142 s colAng1.NW_012122154v1 2055063 61 + 4569836 ctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctcggtgtggtgg i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22720652 4 + 28711273 -----------------------TCTC---------------------------------- i otoGar3.GL873537 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e dasNov3.JH570468 308529 326 - 852752 I e canFam3.chr9 21337984 38 + 61074082 I e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=17804.000000 s hg38.chr17_GL383564v2_alt 3471 5 + 133151 cgggt s panTro5.chr17 16197324 5 + 83181570 tgggt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104705 5 + 83442489 tgggt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939828 5 + 4267968 cgggt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918086 5 - 2193130 tgggt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992404 5 - 77216781 tgggt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905007 5 - 80997621 tgggt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958477 5 + 10377808 tgggt i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804710 5 + 75148670 tgggc i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2055124 5 + 4569836 tgggc i colAng1.NW_012122154v1 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e dasNov3.JH570468 308529 326 - 852752 I e canFam3.chr9 21337984 38 + 61074082 I e otoGar3.GL873537 22720656 0 + 28711273 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e manLeu1.NW_012106252v1 2009642 7142 + 4244037 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=93945.000000 s hg38.chr17_GL383564v2_alt 3476 19 + 133151 gcctgtaatcccagctact s panTro5.chr17 16197329 19 + 83181570 gcctgtaatcccagctact i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104710 19 + 83442489 gcctgtaatcccagctact i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939833 19 + 4267968 gcctgtaatcccagctact i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918091 19 - 2193130 gcctgtaatcccagctact i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992409 19 - 77216781 gcctgcaatcccagctact i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905012 19 - 80997621 gcctgcaatcccagctact i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958482 19 + 10377808 gcctgtaatcccagctact i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804715 19 + 75148670 acctgcaatcccagctact i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016784 19 + 4244037 gcctgcaatcccagctact i manLeu1.NW_012106252v1 I 7142 C 0 s colAng1.NW_012122154v1 2055129 19 + 4569836 gcctgcagtcccagctact i colAng1.NW_012122154v1 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e dasNov3.JH570468 308529 326 - 852752 I e canFam3.chr9 21337984 38 + 61074082 I e otoGar3.GL873537 22720656 0 + 28711273 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=392816.000000 s hg38.chr17_GL383564v2_alt 3495 126 + 133151 aaggaggctgaggcaggagaa--tcgtttgaacccgggaggtggaggtcgtagtgagccgagatcatgccattgcattgcattgcactgcagcctgggtaatagggcgagactctgtctcaa--------------aaaaaa s panTro5.chr17 16197348 121 + 83181570 aaggaggccgaggcaggagaa--tcgtttgaacccgggaggtggaggtcgtagtgagccgagatcatgccattgcattgca-----ctgcagcctgggtaatagggcgagactctgtctcaa--------------aaaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104729 121 + 83442489 aaggaggccgaggcaggagaa--tcgtttgaacccgggaggtggaggtcgtagtgagccgagatcatgccattgcattgca-----ctgcagcctgggtaatagggcgagactctgtctaca--------------aaaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939852 121 + 4267968 aaggaggctgaggcaggagaa--tcgtttgaacccgggaggtggaggtcgtagtgagccgagatcgtgccattgcattgca-----ctgcagcctgggtaatagggcgagactctgtctcaa--------------aaaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918110 121 - 2193130 aagaaggctgaggcagcagaa--tcgtttgaacccaggaggtggatgttgtagtgagccgagatcgtgccattgcattgca-----ctgcagcctgggtgatagggcaagactctgtctcaa--------------aaaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992428 129 - 77216781 caggcggctgagacaggagaa--tcatttgaacccgggaggtggaggttgcagtgagccgagattgtgccattgca----------ctacagcctgggtgagagagcgagactttgtctcaaggt-taaaaaaaaaaaaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905031 129 - 80997621 caggcggctgagacaggagaa--tcatttgaacccgggaggtggaggttgcagtgagccgagattgtgccattgca----------ctacagcctgggtgagagagcgagactttgtctcaaggt-taaaaaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958501 124 + 10377808 caggcggctgaggcaggagaa--tcgtttgaacccgggaggtggaggttgcagtgagccgagattgtgccattgca----------ctacagcctgggtgagagagcgagactttgtctcaaggt-t-----aaaaaaaaaa i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804734 130 + 75148670 caggaggctgagacaggagaa--tcatttgaacccgggaggtggaggttgcagtgagccgagatcgtgccattgca----------ctacagcctgggtgagagggcgagactttgtctaaaggtaaaaaaaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016803 122 + 4244037 caggtggctgagacaggagaa--tcatttgaacccgggaggtggaggttgcagtgagccgagattgtgccattgca----------ctacagcctgggtgagagagcgagactttgtctcaaggt--------taaaaaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055148 116 + 4569836 caggaggctgagacaggagaa--tcatttgaacccgggaggtggaggttgcagtgagccgagatcatgccattgca----------ctatagcctgggtgagagagcgagactttgtctcaaggt-t-------------aa i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22720656 20 + 28711273 ----------AGGCATAAGAAACTCTTTTT---------------------------------------------------------------------------------------------------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338022 16 + 61074082 -------------------------------------AAGG---------------------------------------------AGGCAGCCTGGG-------------------------------------------- i canFam3.chr9 I 38 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e dasNov3.JH570468 308529 326 - 852752 I e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=22682.000000 s hg38.chr17_GL383564v2_alt 3621 4 + 133151 aaaa s panTro5.chr17 16197469 4 + 83181570 aaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104850 4 + 83442489 aaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939973 4 + 4267968 aaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918231 4 - 2193130 aaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992557 4 - 77216781 aaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905160 4 - 80997621 aaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958625 4 + 10377808 aaaa i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804864 4 + 75148670 aaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016925 4 + 4244037 aaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055264 4 + 4569836 aaaa i colAng1.NW_012122154v1 C 0 C 0 s dasNov3.JH570468 308855 4 - 852752 AAAG i dasNov3.JH570468 I 326 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e canFam3.chr9 21338038 0 + 61074082 C e otoGar3.GL873537 22720676 0 + 28711273 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e saiBol1.JH378271 1747269 448 + 3513951 I e calJac3.chr5 46020992 439 - 159171411 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=-15344.000000 s hg38.chr17_GL383564v2_alt 3625 5 + 133151 -aaaa------G s panTro5.chr17 16197473 8 + 83181570 -aaaa---aaaG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104854 5 + 83442489 -aaaa------G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939977 11 + 4267968 -aaaaaaaaaaG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918235 4 - 2193130 -aaGA------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992561 11 - 77216781 -gaaaaaaGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905164 11 - 80997621 -gaaaaaaGGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958629 11 + 10377808 -gaaaaaaGGGA i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804868 11 + 75148670 -gaaaaaaGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016929 11 + 4244037 -gaaaaaaGGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055268 11 + 4569836 -aaaaaaaGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46021431 4 - 159171411 -AAGA------- i calJac3.chr5 I 439 C 0 s saiBol1.JH378271 1747717 4 + 3513951 -AAGA------- i saiBol1.JH378271 I 448 C 0 s otoGar3.GL873537 22720676 5 + 28711273 -----AAAGG-- i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 308859 5 - 852752 GGAAG------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e canFam3.chr9 21338038 0 + 61074082 C e aotNan1.NW_018502359v1 6907801 447 - 7032639 I e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=23490.000000 s hg38.chr17_GL383564v2_alt 3630 5 + 133151 --GGAGG s panTro5.chr17 16197481 5 + 83181570 --GGAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104859 5 + 83442489 --GGAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939988 5 + 4267968 --GGAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918239 2 - 2193130 -----GC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992572 5 - 77216781 --GGAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905175 5 - 80997621 --GGAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958640 5 + 10377808 --GGAGC i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804879 5 + 75148670 --GGAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016940 5 + 4244037 --GGAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055279 5 + 4569836 --AGAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46021435 5 - 159171411 --GGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747721 5 + 3513951 --GGAGC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6908248 5 - 7032639 --ggagc i aotNan1.NW_018502359v1 I 447 C 0 s otoGar3.GL873537 22720681 5 + 28711273 --GGAGC i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 308864 5 - 852752 CAAGA-- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e canFam3.chr9 21338038 0 + 61074082 C e cebCap1.NW_016107730v1 1796778 458 + 1920343 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=287698.000000 s hg38.chr17_GL383564v2_alt 3635 34 + 133151 AAGAGGAGGCTCATCTGATCATCTGCAATGTCAA s panTro5.chr17 16197486 34 + 83181570 AAGAGGAGGCTCATCTGATCATCTGCGATGTCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104864 34 + 83442489 AAGAGGAGGCTCATCTGATCATCTGCGATGTCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3939993 34 + 4267968 AAGAGGAGGCTCATCTGATCATATGCGATGTCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918241 34 - 2193130 AAGAGGAGGCTCATCTGATCATCTGTGATGTCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992577 34 - 77216781 AAGAGGACGCTCAGCTGATCATCTGCGATGTCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905180 34 - 80997621 AAGAGGAGGCTCAGCTGATCATCTGCGATGTCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958645 34 + 10377808 AAGAGGAGGCTCAGCTGATCATCTGCGATGTCAA i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804884 34 + 75148670 AAGAGGAGGCTCAGTTGATCATCTGTGATGTCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016945 34 + 4244037 AAGAGGAGGCTCAGCTGATCATCTGCGATGTCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055284 34 + 4569836 AAGAGAAGGCTCAGTTGATCATCTGCGATGTCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46021440 34 - 159171411 AAGAGGAGGCTCATCCAATCATCTTCACTGTTAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747726 34 + 3513951 AAGAGGAGGCTCATCCAATCATCTTCGATGTTAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797236 34 + 1920343 AAGAGGAGGCTCATCCAATTATCTTCAATGTTAA i cebCap1.NW_016107730v1 I 458 C 0 s aotNan1.NW_018502359v1 6908253 34 - 7032639 aagaggaggCTCATCCAATCATCTTCAATGTTAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22720686 25 + 28711273 AAGAAGAGGC---------AGTCTGGGATGTCAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338038 7 + 61074082 ---------------------------ATGTCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308869 25 - 852752 GAGAGCAGG---------TAGTCTTGGGTGCCAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2918789 19 + 8555354 I e micMur3.chr16 35837029 112 - 65901067 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=58428.000000 s hg38.chr17_GL383564v2_alt 3669 4 + 133151 GGAT s panTro5.chr17 16197520 4 + 83181570 GGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104898 4 + 83442489 GGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940027 4 + 4267968 GGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918275 4 - 2193130 GGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992611 4 - 77216781 GGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905214 4 - 80997621 GGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958679 4 + 10377808 GGAT i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64804918 4 + 75148670 GGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016979 4 + 4244037 GGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055318 4 + 4569836 GGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46021474 4 - 159171411 GGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747760 4 + 3513951 GGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797270 4 + 1920343 GGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6908287 4 - 7032639 GGAT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2918808 4 + 8555354 GGAT i proCoq1.NW_012135969v1 I 19 C 0 s otoGar3.GL873537 22720711 3 + 28711273 -GAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338045 4 + 61074082 GGAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308894 4 - 852752 GAAC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35837029 112 - 65901067 I e cerAty1.NW_012006043v1 1847632 966 - 8458610 I a score=256895.000000 s hg38.chr17_GL383564v2_alt 3673 19 + 133151 GGGCTCCTTCCCACCT-ACA s panTro5.chr17 16197524 19 + 83181570 TGGCTCCTTCCCACCT-ACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104902 19 + 83442489 GGGCTCCTTCCCACCT-ACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940031 19 + 4267968 GGGCTCCTTCCCACCT-ACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918279 19 - 2193130 GGGCTCCTTCCCACCT-ACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992615 19 - 77216781 GGGCTCTTTCCCACCT-GCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905218 19 - 80997621 GGGCTCTTTCCCACCT-GCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958683 19 + 10377808 GGGCTCTTTCCCACCT-GCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1848598 19 - 8458610 GGGCTCTTTCCCACCT-GCA i cerAty1.NW_012006043v1 I 966 C 0 s chlSab2.chr16 64804922 19 + 75148670 GGGCTCTTTCCCACCT-GCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2016983 19 + 4244037 GGGCTCTTTCCCACCT-GCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055322 19 + 4569836 GGGCTCTTTCCCACCT-GCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46021478 19 - 159171411 AGGCTCCTTCCCACCT-ACA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747764 19 + 3513951 AGGCTCCTTCCCACCT-ACA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797274 19 + 1920343 AGGCTCCTTCCCACCT-ACA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6908291 19 - 7032639 AGGCTCCTTCCCACCT-ACA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2918812 19 + 8555354 GGGCTTCTCCTCCCCC-ACA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22720714 19 + 28711273 GGGCTCTGCCTTCCCT-ACA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338049 20 + 61074082 GAGCTCCTTCCCAGCTGGCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 308898 19 - 852752 AAGCTCCTCCCCAAAT-ACA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35837029 112 - 65901067 I a score=10202289.000000 s hg38.chr17_GL383564v2_alt 3692 674 + 133151 CAGCTGAGTACATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCTGTTCCTTTGAGACCAAAGAAAATCAGAAGAGCCCTCTGCTGTACGAAGGACTAGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGAGACACATATCAAGCTTT---GGAGAGGTGTGTCAGGACGCA-AAGGATGCAAAGCTTCAGCTGTGATGCTTAAGAATTAACAAGTGTCATATGTTCTGAGACAGAAGGAACCATGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGAGGGTTCCTATTTAGCAAATCAAAGGGAAGAATTTTAATGCTTCAATTCTCTGGATTATAGTGATGCTATGTGTTGAGGCGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGCCCCAGTAAAGAATGAGTCATAGCTGACCTCAGGGCCGCTG---GAGCCACAGCTGACCCACAGTGGGTTTTCC-------------TCTTGGGAAGAATTCCAGACCCC-TTATTTCTCCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCATCAT-CCCCTGACTCCCTTGTGGTTTTCACGGGGATGCATGTTC- s panTro5.chr17 16197543 687 + 83181570 CAGCTGAGTACATCCCAGACGCCTGCCTCATGCCTTCCACCTACTGCCTGTTCCTTTGAGACTGAAGAAAATCAGAAGAGCCCTCTGCTGTACAAAGGACTAGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGAGACACATATCAAGCTTT---GGAGAGGTGTGTCAGGACGCA-AAGGATGCAAAGCTTCAGCTGTGATGCTTAAGAATTAACAAGTGTCATATGTTCTGAGACAGAAGGAACCATGATTTTAGCCAACGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGAGGGTTCCTATTTAGCAAATCAAAGGGAAGAATTTTAATGCTTCAATTCTCTGGATTATAGTGATGCTATGTGTTGAGGCGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGTCCTCTAAGGATTGCCCCAGTAAAGAATGAGTCATAGCTGACCTCAGGGCCGCTG---GAGCCACAGCTGACCCACAGTGGGTTTTCCAGATGGAAATTCTTCTTGGGAAGAATTCCAGAACCC-TTATTTCTCCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACATCGTCAT-CCCCTGACTCCCTTGTGGTTTTCACGGGGATGCATGTTC- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16104921 674 + 83442489 CAGCTGAGTACATCCCAGACGCCTGCCTCATGCCTTCCACCTACTGCCTGTTCCTTTGAGACTGAAGAAAATCAGAAGAGCCCTCTGCTGTACAAAGGACTAGGCAGTGTCTATGTCGTTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGAGACACATATCAAGCTTT---GGAGAGGTGTGTCAGGACGCA-AAGGATGCAAAGCTTCAGCTGTGATGCTTAAGAATTAACAAGTGTCATATGTTCTGAGACAGAAGGAACCATGATTTTAGCCAACGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGAGGGTTCCTATTTAGCAAATCAAAGGGAAGAATTTTAATGCTTCAATTCTCTGGATTATAGTGATGCTATGTGTTGAGGCGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGCCCCAGTAAAGAATGAGTCATAGCTGACCTCAGGGCCGCTG---GAGCCACAGCTGACCCACAGTGGGTTTTCC-------------TCTTGGGAAGAATTCCAGAACCC-TTATTTCTCCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCGTCAT-CCCCTGACTCCCTTGTGGTTTTCACGGGGATGCATGTTC- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940050 674 + 4267968 CAGCTGAGTACATCCCAGACACCTGCCTCATGCCTTCCACCTATTGCCTGTTCCTTTGAGACCAAAGAAAATCAGAAGAGCCCTCTGCTGTACAAAGGACTAGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGAGACACATATCAAGCTTT---GGAGAGGTGTGTCAGGACGCA-AAGGATGCAAAGCTTCAGCTGTGATGCTTAAGAATTAACAAGTGTCATATGTTCTGAGACAGAAGGAACCATGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGAGGGTTCCTATTTAGCAAATCAAAGGGAAGAATTTAAATGCTTCAATTCTCTGGATTACAGTGATGCTATGTGTTGAGGCGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGCCCCAGTAAAGAATGAGTCATAGCTGACCTCAGGGCCGCTG---GAACCACAGCTGACCCACAGTGGGTTTTCC-------------TCTTGGGAAGAATTCCAGACCCC-TTATTTCTCCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCATCAT-CCCCTGACTCCCTTGTGGTTTTCATGGGGATGCATGTTC- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918298 674 - 2193130 CAGCTGAGTACATCCCAGACTCCTGCCTCATGCCTTCCACCTACTGCCCGTTCCTTTGAGACCAAAGAAAATCAGAAGAGCCCTCTGCTTTACAAAGGACTAGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGAGACACAAATCAAGCTTT---GGAGAGGCATGTCAGGATGCA-AAGGATGCAAAGCTTCAGATGTGATGCTTAAGAATTAAGAAGTGTCATATGTTCTGAGACAGAAGGAACCATGATTTTAGCCAATGGGATAAAATGCTGTCAGAGGATAGGGTCAAGAGAGGGTTCCTATTTAGCAAATTAAAGGGAGCAATTTTAATGCTTCAATTCTCTGGATTATAGTGATGCTATGTGTTGAGGCGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAACGATTGCCCTAGTAAAGAATGAGTCATGGCTGACCTCAGGGCCGCTG---GAGCCACTGCTGACCCAGAGTGGGTTTTCC-------------TCTTGGGAAGAATTCCAGACCCC-TTATTTCTCCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACATCATCAT-CCCCTGACTCCCTTGTGGTTTTCATGGGGATGCTTGTTC- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29992634 673 - 77216781 CAGCTGAGTATATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATTAGAAGGGCCCTCTCCTTTACAAAGGAC-AGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AACCCAAGCCAGAGACAGAAATCAAGCTTT---GGAGAGGCGTGTCAGGACGCA-AAGGATGCAAAACTTCAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACAGAAGGAACCACGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGACGGTTCCTATTTAGCAAATCAAAGGGAACAATTTTAGTGCTTCAATTATCTGGATTATAGTGATGCTATGTGTTGAGGTGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAAATTTCACCCGGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTTAGGGCCACTG---GAGCCACAGTTGACCCAGAGTGGGTTTTTC-------------TCTTGGGAAGAATTCCAGACCCC-TTATATCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCTCTGACTCCCTTGTGGTTTTCATGGGGATGCTTGTTC- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905237 673 - 80997621 CAGCTGAGTATATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATTAGAAGAGCCCTCTCCTTTACAAAGGAC-AGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AACCCAAGCCAGAGACAGAAATCAAGCTTT---GGAGAGGCGTGTCAGGACGCA-AAGGATGCAAAACTTCAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACGGAAGGAACCACGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGACGGTTCCTATTTAGCAAATCAAAGGGAACAATTTTAATGCTTCAATTATCTGGATTATAGTGATGCTATGTGTTGAGGTGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAAATTTCACCCGGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTTAGGGCCACTG---GAGCCACAGTTGACCCAGAGTGGGTTTTTC-------------TCTTGGGAAGAATTCCAGACCCC-TTATATCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCCCTGACTCCCTTGTGGTTTTCATGGGGATGCTTGTTC- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1958702 673 + 10377808 CAGCTGAGTATATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATTAGAAGAGCCCTCTGCTTTACAAAGGAC-AGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AACCCAAGCCAGAGACAGAAATCAAGCTTT---GGAGAGGCGTGTCAGGACGCA-AAGGATGCAAAACTTCAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACAGAAGGAACCACGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGATGGTTCCTATTTAGCAAATCAAAGGGAACAATTTTAATGCTTCAATTATCTGGATTATAGTGATGCTATGTGTTGAGGTGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAAATTTCACCCGGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTTAGGGCCACTG---GAGCCACAGTTGACCCAGAGTGGGTTTTTC-------------TCTTGGGAAGAATTCCAGACCCC-TTATATCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCCCTGACTCCCCTGTGGTTTTCATGGGGATGCTTGTTC- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1848617 673 - 8458610 CAGCTGAGTATATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATCAGAGGAGCCCTCTGCTTTACAAAGGAC-AGGCAGTGTCAATGTCATTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGAGACAGAAATCAAGCTCT---GGAGAGGCGTGTCAGGATGCA-AAGGATGCAAAACTTCAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACAGAAGGAACCACGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGACGGTTCCTATTTAGCAAATCAAAGGGAACAATTTTAATGCTTCAATTATCTGGATTATAGTGATGCTATGTGTTGAGGTGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAAATTTCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTCAGGGCCACTG---GAGCCACAGTTGACCCAGAGTGAGTTTTTC-------------TCTTGGGAAGAATTCCAGACCCC-TTATATCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCCCTGACTCCCTTGTGGTTTTCATGGGGATGCTTGTTC- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64804941 673 + 75148670 CAGCTGTGTATATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATCAGAAGAGCCCTCTGCTTTATAAAGGAC-AGGCAGTGTCTATGTCATTATGTAAAATGGACCATGCAG-AGCCCAAGCCAGAGACAGAAATCAAGCTTT---GGAGAGGCGTGTCAGGACGCA-AAGGATGCAAAACTTAAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACAGAAGGAACCACGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGACGGTTCCTATTTAGCAAATCAAAGGGAACAATTTTAGTGCTTCAATTATCTGGATTATAGTGATGCTATGTGTTGAGGTGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAAATTTCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTCAGGGCCACTG---GAGCCACAGTTGACCCAGAGTGGGTTTTTC-------------TCTTGGGAAGAATTCCAGACCCC-TTATTTCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCCCTGACTCCTTTGTGGTTTTCATGGGGATGCTTGTTC- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2017002 673 + 4244037 CAGCTGAGTATATCCCAGACACCTGCCTCATGCCTTCCACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATCAGAAGAGCCCTCTGCTTTACAAAGGAC-AGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AACCCAAGCCAGAGACAGAAATCAAGCTTT---GGAGAGGCGTGTCAGGACGCA-AAGGATGCAAAACTTCAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACAGAAGGAACCACGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGACGGTTCCTATTTAGCAAATCAAAGGGAACAATTTTAATGCTTCAATTATCTGGATTATAGTGATGCTATGTGTTGAGGTGGAAGATAGGAACAAAGGGGTATTTGAAGATGGA--AAAT--GCAAATTTCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTCAGGGCCACTG---GAGCCACAGTTGACCCAGAGTGGGTTTTTC-------------TCTTGGGAAGAATTCCAGACCCT-TTATATCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCCCTGACTCCCATGTGGTTTTCATGGGGATGCTCGTTC- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2055341 672 + 4569836 CAGCTGAGTACATCCCAGACACCTGCCTTATGCCTTCTACCTACTGCCAGTTCCTCTGAGACCAAAGAAAATCAGAAGAGCCCTCTGCTTTACAAAGGAC-AGGCAGTGTCTATGTCATTATGCAAAATGGACCATGCAG-AGCCCAAGCCAGGGACAGAAATCAAGCTTT---GGAGAGGCGTGTCAGGATGCA-AAGGATGCAAAACTTCAGCTGTGATGCTTAAGAAATAACTAGTGTCATATGTTCTGAGACAGAAGGAACCATGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGGTCAAGAGACAGTTCCTATTTAGCAAATCAAAGGGAACAATTTTACTGCTTCAATTCTCTGGATTATAGTGATGCTATGTGTTGAGGCGGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAAATTTCACCCAGACGCCTCTGAGGGAT-----GGCCTGGCAGGGAGAGGCCCTCTAAGGATTGTCCCAGTAAAGAATGAGTCATGGCTGACCTCAGGGCCACTG---GAGCCACAGCTGACCCAGAGTGGGTTTTTC-------------TCTTGGGAAGAATTTCAGACCC--TTATTTCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCATCAACACCCACAT-CCCCTGACTCCCTTGTGGTTTTCATGGGGATGCCTGTTC- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46021497 673 - 159171411 CAGCTGAATGTATCTCAGATACCTGCCTCATGCCTTCCACCTACTGCCAATTCCTTTGAGCTTAAAGAAAATCAGCAGAGCCCTCTGCTTTACAAAGGACTAGGTAGTGTCTATGTCATTATGCAAAACTGACCATGCAG-AGCCCAAGCTAGAGACACAAATCTAGCTTT---GAAGAGGGGAGTCGGGATGCA-AAGGACGCAAAGCTTCAGCTGTGATGCTTAAGAAGTAACAAGTGTCATGTGTTTTGAGACAGAAGGAACCGTGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGATCAAGAGATGGATCCTATTTAGCAAATCAAAGGGAAAAATTTTAATGGTCCAATTCTCTGGATTATAGTGATGCTATGTGATGAGGCAGAAGATAGGAACGAAGGGATCTTTGAAGACGGA--AAAT--GCAGA-TGCACCCAGTGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGACG-ACTCTAAGGATTGCCCCAGTAAAGAACGAGTCACGGCTGATCTCAGGGCCGCTG---GAGCCACAGCTGACCCAGAGTGTGTCTTCC-------------TCTTGGGAAGAATTCCAGACCCC-TTATTTCTTCTTGAGAGAATCCCAAGAGCCCAGGATTCATCTACACTCACATCCCCCTGACTCCCATTTGGTTTTCATGGGGCTGCTTGTTC- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1747783 674 + 3513951 CAGCTAAGTGTATCCCAGATACCTGCCTCATGCCTTCCACCTACTGCCAATTCCTTTGAGATTGAAGAAAATCAGCAGAGCCCTCTGCTTTACAAAGGACTAGGTAGTGTCTATGTCATTATGCAAAACTGACCATGCAG-AGCCCAAGCTAGAGACACAAATCAAGCTTT---GGAGAGGGGAGTCGGGACGCA-AAGGTTGCAAAGCTTCAGCTGTGATGCTTAAGAAGTAACAAGTGTCATGTGTTTTGAGACAGAAGGAACCGTCATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGATCAAGAGATGGATCCTATTTAGCAAATCAAAGGGAAACATTTTATTGGTCCAATTCTCTGGATTATAGTGATGCTATGTGATGAGGCAGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGACGCACTCTAAGGATTGCCCCAGTAAAGAACGAGTCATGGCTGACCTCAGGGCCGCTG---GAGCCACAGCTGACCCAGAGTGTGTCTTTC-------------TCTTGGGAAGAATTCCAGAACCC-TTATTTCTTCTTGAGAGAATTCCAAGAGCCCAGGATTCATCAACACTCACAT-CCCCTGACTCCCATTTTATTTTCATGGGGCTGCTTGTTC- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797293 674 + 1920343 CAGCTGAGTGTATCCCAGATACCTGCCTCATGCCTTCCACCTACTGCCAATCCCTTTGAGATTAAAGAAAATCAGCAGAGCCCTCTGCTTTACAAAGGACTAGGTAGTGTCTATGTCATTATGCAAAACTGACCATGCAG-AGCCCAAGCTAGAGACACAAATCAAGCTTT---GGAGAGGGGAGTCGGGACGCA-AAGGATGCAAAGCTTCAGCTGTGACGCTTAAGAAGTAACAAGTGTCATGTGTTTTGAGACAGAAGGAACCGTGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGATCAAGAGATGGATCCTATTTAGCAAATCAAAGGGAAAAATTTTATTGGTCCAATTCTCTGGATTATAGTGATGCTTTGTGATGAGGCAGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGACGCACTCTAAGGATTGCCCCAGTAAAGAACGAGTCATGGCTGACCTCAGGGCCGCTG---GAGCCACAGCTGACCCAGAGTGTGTCTTCC-------------TCTTGGGAAGAATTCCAGATCCA-TTATTTCTTCTTGAGAGAATTCCAAGAGCCCAGGATTCATCAACACTCACAT-CCCCTGACTCCCATTTGGTTTTCATGGGGCTGCTTTTTC- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6908310 673 - 7032639 CAGCTGAGTGTATCCCAGATACCTGCCGCATGCCTTCCACCTACTGCCAATTCCTTTGAGATTAAAGAAAATCAGCAGAGCCCTCTGCTTTACAAAGGACTAGGTAGTTTCTATGTCATTATGCAAAACTGACCATGCAG-AGCCCAAGCTAGAGACACAAATCAAGCTTT---GGAGAGGGGAGTAGGGACGCA-AAGGATGCAAAGCTTCAGCTGTGATGCTTAAGAAATAACAAGTGTCATGTGTTTTGAGACAGAAGGAACCGTGATTTTAGCCAATGGGATAAAATCCTGCCAGAGGATAGGATCAAGAGATGGCTCCTATTTAGCAAATCAAAGGGAAAAATTTTAATGGTCCAATTCTCTGGATTATGGTGATGCTATGTGATGAGGCAGAAGATAGGAACAAAGGGGTCTTTGAAGATGGA--AAAT--GCAGATTGCACCCAGAGGCCTCTGAGGGAT-----GGCCTGGCAGGGAGACACACTCTAAGGATTGCCCCAGTAAAGAACGAGTCATGGCTGACCTCAGGGCTGCTG---GAGCCACAGCTGACCCAGAGTGTATCTTCC-------------TCTTGGGAAGAATTCCAGACCCC-TTATTTCTTCTGGAGAGAATTCCAA-AGCCCAGGATTCATCAACACTCACAT-CCCCTGACTCCCATTTGGTTTTCATGGGGCTGCTTGTTC- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837141 675 - 65901067 CAGCTGAGTGCCTCTCAGACACCTGCCACTTGCCTTCAACTTACTGCCAGTTCCTTTGAGACAAAAGAAAATCAACAGAACCCACTGCTTTACAAAGGAGTAGGCAGCGTCAGTGTCATTATGCAAAATGGACCACGCAG-AGCCCAAGCCAGGCCCACAAACCAAGCTTT---AGAGAGGGGTGTCA----GCCAAAAAATGCAGAGCTTCAGCAGTGATGCTTAAGAGGTAACAAGCGTCACATGTTCTGAGTTAGAAAGAACCATGATTTCAGCCAATGGGAC-AAATCCTGCCAGAGGATGGGGTCAGAAGAGGGATCCTATTTAGCAAATCAAAGGTAACTATTTTAATGGCCCAATTCTCTAGATTATAGTGATGCTACATGACAAGGTGGAAGAGAGACACAAACGGGTCTTTGAAGATGGAACACAT--GCAGATTTTACCTGGATGCCTCTGAAGGGT-----GGCTTGGCGGGGAGAGGTCCTCTAAGGTTTGCCCCAGCAAAGAATTATTCATCGCGGACCTCGGGGCCACTGGTAGAGCCACAGCTGACCCAGAGTGAGTTTTCC-------------TCTTGGGAAGAATTCCAGACCCCTTTATTTCTTCTTGAGAGAATTCCAAGAGCCCAGGTTTCACCAACATTCACAT-TCCCTGACCCCCA-TTGATTTTCATGGGGATGCTTGTTC- i micMur3.chr16 I 112 I 2 s proCoq1.NW_012135969v1 2918831 669 + 8555354 CAGCTGAGTGCATCTCAAACACCTGCCACTTGCCTTCCACTTACTGCCAGTTCCTTTGAGACAAAAGAAAATCAACAGAGCCCATTGCTTTACAAAGGAGTAGGCAGCGTCAGTGTCATTATGCAAAATGGACCACACAG-AGCCCAAGCTAGGACCACAAATCAAACTTT---AGAGAGGGGTGTCA----GCC-CCAAATGCAAAGCTTCAGTAGTGATGCTTAAGAGGTAACAAGCGTCACATGTTCTAAGTTAGAAAGAACCA-----TTAGCCAATGGGAC-AAATCCTGCTAGAGGACAGGGTCA-AAGAGGGATCCTATTTAGCAAATCAAAGGAAACAATTTTAATGGCCCAATTCTCTAGATTATAGTGATGCTATATGACGAGGTGGAAGAGAGACATAAACGGGTCTTTGAAGATGGAACACAT--GCAGATTTTACCCAGATGCCTCTGAAGGAT-----GGCCTGGCAGGAAGAGGGCCTCTAAAGTTTGCCCCAGTAAAGAATTATTCATCGCTAACCTCAGGGCCACTGGCAGAGCCACAGCTGACCCAGAGCGAGTTTTCT-------------TCTTGGGAAGAATTCCAGAACCTTTTATTTCTTCCAGAGAGAATTCTAAGAGCCCAGGTTTCACCAACACTCACAT-TCCCTGACTCCCATTTGGTTTTCATGGGGATGCTTGTTC- i proCoq1.NW_012135969v1 C 0 I 2 s otoGar3.GL873537 22720733 669 + 28711273 CAGCTGCGTGCATCTCACATGCCTGCCATCTGCCTTCCACTTACTGTCAGTTCCTTTGAGACCAAA-AAAATCATCAGAGTCCACTGCTTTACAAAGGAGTAGCCTGCGTTAGTGTCATTATGCAAAAGGGACCACGCAA-AGCCCAAGCCAGGGCCACAAATCAAGCTTC---AGAGAGAGGCGTCA----ACC-CAAAATGCAAAGCTTCAGCAGTGATGCTTAAGAGATGACCACTGTCGCATGTTTTGAGTTAGAAGGAAGTGTGATTTTAGCCAAT-GGAC-ACATCA-GCCTGAGGACAGGGTCAAACGAGGGATGCTATTTAGCAAATCAAAGGAAACAGTTTTAATGGCCCAATTCTC-AGGTTATAGTGATGCTCTCTGACGAGGTGGAAGAGAGAAAC--ATGGGTCTTTGAAGACAGAACACAT--GCAGATTGCACCCAAGGGCGTCTGAAGGCT-----GGCCTGGCAGGGAGGGGTCCTCCAAGGTTTGCCCCAGGAAAGAATGACTCATCACTGACCTCAAGGCCACTGGCAGGGCCACAGCTGACCTAGAGCAAGCTTTCC-------------TTTTGGGAAGAATTCTAGACCTCTTTATTTCTTCTTGAGAGAATTCTAAGAGCCCAGGTTTTACCAACATTCACAT-TGCCTGAGTCCCCTTCTGTTTTCATCAGGGTGCGTGTTC- i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21338069 653 + 61074082 CAGCAGAGTGTGTCTCAAACACCTGCCTCATGCCTTCCACTTCCTGCCAGTTCCTTTGAGACAAAAGAAAATCAGAAGAATCCACTTCTTTAAGAGCAAC-AGGTGGCATCAGTGTCATTATGCAGAACAGATCATGCTG-AGCCCAAGTCAGG------------GCTTT---AGAGAGGGGTGTCA----GTG-AGGGCATCAACACTCCAGTTGTGAAGCCTAAGAAGTAAAAAGAGGTGTGTGTCCTGAGATGGAAGGAACCAGAATTTCAGTCAAGAGGAC-AAATCCTGCCAGGGGATAGGGCCAAAAGGTGGAGCCTACTTAGCAAATCAAAGGAAATGATTGTAATGGTCCAATTCTCTGGATTAAAGTGATGCATGGTGATGAGGC--AAGAGAGAAATAAAGGGGTGTTTGAAGATGCAACATAT--GCAGATTGCACCCAGAGGCCTCTGAAGGATGAGAAGGCCAGGTCTGGTGATGTCTTCTAATTACAGTGTTTGTAAGGGGTCAGT----GGTGACCTCAGGATAACTG---G-----CACTGACCCCAGAGTGGGTTTTCT-------------CTTTAGGAAGAATTCCAGATTTCTTTATTTCTTCTTGAGAGAATTCTAAGAGCCCAGGTTTTACCAATACTCACAT-CCACTGCCTCCCATTTGGTTTTCTTGGAGAAAGTTGTTC- i canFam3.chr9 C 0 I 27 s dasNov3.JH570468 308917 668 - 852752 CAGATGAGTGCACTTCAAATACTGGCCTTATGCTTTCCACAGATTGCCATTTCCTCTAAGAAGAAAGAAAGT-AGCAGAACCCACTGCTTTACAAAGTAGCAGGTAGCATCAGTGTCGTTATGCAAAGCAGACCATGCAGCAGTCCAAATTAGGGGCACAGAGCAAGCTTTTGGAGAGAGGGGCATCA----GCC-AGGGATGCA--GCTTCAGGTGTAACACTTAAGTAATAAC---TGTTGAATGTTCTGAATTGGAAGGAACTATGATTTT---TAGTAGAAC-AAATCCTGCCAGGGAATAGAGTCAAAAGAGGGATCCTATTAAGCCAATTAAAGGAAA-AATTTTAATGGTCCAATTCTCTGAATTAGAGAGATGCTGTGTAATGAGGCAGGGGAGAGAAACAAAGGGGTGTTTGAAGAAGGA--ACATAGGCTAATTGTACCTTGAGGCCTCTGAAGGAT-----GGCCTGGCCTGGAGATGTCTTCTGAGGATTG-GCCAGTAAAGAATTATTCATTGCTGACCTCAAGACAACTGGCAGAGCCACAGCTGGCTCAAAGTGGGTTTTCC-------------TCTTGGGAAGAATTACAGACTCCTTTGTTTCTTCTTGAGAGAACGC-AAGAGCCCAGGTTTCACCAATTCTCACAT-CTATTGCTTTCCATTTGGTTTTCTTGGCGATGCTTTCCTT i dasNov3.JH570468 C 0 C 0 a score=312592.000000 s hg38.chr17_GL383564v2_alt 4366 21 + 133151 AACTTTTTCTCAGAGCAAAGA s panTro5.chr17 16198230 21 + 83181570 AACTTTTTCTCAGAGCAAAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16105595 21 + 83442489 AACTTTTTCTGAGAGCAAAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940724 21 + 4267968 AACTTTTTCTCAGAGCAAAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918972 21 - 2193130 AACTTTTTCTCAGAGCAAAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29993307 21 - 77216781 AACTTTTTCTCAGAGCAAAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905910 21 - 80997621 AACTTTTTCTCAGAGCAAAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1959375 21 + 10377808 AACTTTTTCTCAGAGCAACGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1849290 21 - 8458610 AACTTTTTCTCAGAGCAAAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64805614 21 + 75148670 AACTTTTTCTGAGAGCAAAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2017675 21 + 4244037 AACTTTTTCTCAGAGCAAAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2056013 21 + 4569836 AACTTTTTCTCAGAGCAAAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46022170 21 - 159171411 AACCTTTTCTCAGAGCAAAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1748457 21 + 3513951 AACATTTTCTCAGAGCAAAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797967 20 + 1920343 AAC-TTTTCTCAGAGCAAAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6908983 21 - 7032639 AACCTTTTCTCAGAGCAAAGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837818 21 - 65901067 GAACTTTTCTCAGAGCAAAGA i micMur3.chr16 I 2 C 0 s proCoq1.NW_012135969v1 2919502 21 + 8555354 GAACTTTTCTCGGAGCAAAGA i proCoq1.NW_012135969v1 I 2 C 0 s otoGar3.GL873537 22721404 21 + 28711273 AAACTTTTCTCAGAGCAAAGA i otoGar3.GL873537 I 2 C 0 s dasNov3.JH570468 309585 21 - 852752 GAAATTTGCTCAGAGCAAAGA i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21338722 27 + 61074082 I a score=158711.000000 s hg38.chr17_GL383564v2_alt 4387 12 + 133151 TGTATTTATGCT s panTro5.chr17 16198251 12 + 83181570 TGTATTTATGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16105616 12 + 83442489 TGTATTTATGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940745 12 + 4267968 TGTATTTATGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1918993 12 - 2193130 TGTATTTATGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29993328 12 - 77216781 TGTATTTACGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905931 12 - 80997621 TGTATTTACGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1959396 12 + 10377808 TGTATTTACGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1849311 12 - 8458610 TGTATTTACGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64805635 12 + 75148670 TGTATTTATGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2017696 12 + 4244037 TGTATTTACGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2056034 12 + 4569836 TGTATTTATGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46022191 12 - 159171411 TGTATTTATACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1748478 12 + 3513951 TGTATTTATACT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797987 12 + 1920343 TATATTTATACT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6909004 12 - 7032639 TGTATTTATACT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837839 12 - 65901067 TCTATTCATGCT i micMur3.chr16 C 0 I 45 s proCoq1.NW_012135969v1 2919523 12 + 8555354 TCTATTTATGCT i proCoq1.NW_012135969v1 C 0 I 70 s dasNov3.JH570468 309606 12 - 852752 TCTATTTATACT i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21338722 27 + 61074082 I e otoGar3.GL873537 22721425 0 + 28711273 C a score=20875.000000 s hg38.chr17_GL383564v2_alt 4399 3 + 133151 GTT s panTro5.chr17 16198263 3 + 83181570 GTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16105628 3 + 83442489 GTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940757 3 + 4267968 GTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1919005 3 - 2193130 CTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29993340 3 - 77216781 TTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905943 3 - 80997621 TTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1959408 3 + 10377808 TTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1849323 3 - 8458610 CTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64805647 3 + 75148670 CTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2017708 3 + 4244037 CTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2056046 3 + 4569836 CTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46022203 3 - 159171411 CTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1748490 3 + 3513951 CTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1797999 3 + 1920343 CTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6909016 3 - 7032639 CTT i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 309618 3 - 852752 CCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e canFam3.chr9 21338722 27 + 61074082 I e otoGar3.GL873537 22721425 0 + 28711273 C a score=6830716.000000 s hg38.chr17_GL383564v2_alt 4402 742 + 133151 TAAAAATAT--ATGCACACAGTTTTATGTATAATGTGGCATCATAACTTGTAGGGCATTTACTCTTATTTTATACATTCAGATATG--TTTGGT-TTTTTTTTTGAAACACTTCTTAAGGCTACACAACAGGACAGAGAAAAATAAACAGGAACATATTCAACAATTATAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTcaatacttcaaaagatacatatataaactt-taaaaaa-atgctcaacatcactaatgatcagggaaatgcaaatcgaaatcacaatgcgatacgaccttgctcctgcaagaatggccataatcaaaaaaataaaaaaa-caatagatgttggagtggatgtggtgatcaggggacacttctacatggctggtgggaacgtaaactagtacag-ccacta---tggaaaacagtgtggagattccttaaagaactaaaagtagaactatcatttgatccaacaatcccactactgggtatctactc-agaggaaaagaagtcattatgctaaaa--agatacttgcacacacacatttgtagcagcacaattcacaattgcaaaatcacagaaccaacccaaatgcccatccatcagtgagtggataaagacactgtgggctgggcacagtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaac s panTro5.chr17 16198266 743 + 83181570 TAAAAATAT--ATGCACACAGTTTTATGTATAATGTGGCATCATAACTTGTAGGGCATTTACTCTTATTTTATACATTCAGATATG--TTTGGTGTTTTTTTTTGAAACACTTCTTAAGGCTACACAACAGGACAGAGAAAAATAAACAGGAACATATTCAACAATTATAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATACTTCAAAAGATACATATATAAACTT-Taaaaaa--tgctcaacatcactaatgatcagggaaatgcaaatcgaaatcacaatgcgatacgaccttgctcctgcaagaatggccataatcaaaaaaataaaaaaaacaatagatgttggagtggatgtggtgatcaggggacacttctacacggctggtgggaacgtaaactagtacag-ccacta---tggaaaacagtgtggagattccttaaagaactaaaagtagaactatcatttgatccaacaatcccactactgggtatctactc-agaggaaaagaagtcattatgctaaaa--agatacttgcacacacacatttgtagcagcacaattcacaattgcaaaatcacagaaccaacccaaatgcccatccatcagtgagtggataaagaaactgtgggctgggcacagtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcaaaac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16105631 741 + 83442489 TAAAAATAT--ATGCACACAGTTTTATGTATAATGTGGCATCATAACTGGTAGGGCATTTACTCTTATTTTATACATTCAGATATG--TTTGG--TTTTTTTTTGAAACACTTCTTAAGGCTACACAACAGGACAGAGAAAAATAAACAGGAACATATTCAACAATTATAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATACTtcaaaagatacatatataaactt-taaaaaa-atgctcaacatcactaatgatcagggaaatgcaaatcgaaatcacaatgcgatacgaccttgctcctgcaagaatggccataatcaaaaaaataaaaaaa-caatagatgttggagtggatgtggtgatcaggggacacttctacacggctggtgggaacgtaaactagtacag-ccacta---tggaaaacagtgtggagattccttaaagaactaaaagtagaactatcatttgatccaacaatcccactactgggtatctactc-agaggaaaagaagtcattatgctaaaa--agatacttgcacacacacatttgtagcagcacaattcacaattgcaaaatcacagaaccaacccaaatgcccatccatcagtgagtggataaagaaactgtgggctgggcacagtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcaaaac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3940760 734 + 4267968 TAAAAATAT--ATGCACACAGTTTTATGTATAATGTGGCATCATAACTTGTAGGGCATTTACTC-TATTTTATACATTCAGATATT---------TTTTTTTTTGAAACACTTCTTAAGGCTACACAAGAGGACAGAGAAAAATAAACAGGAACATATTCAACAATTATAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTcaatacttcaaaagatacatatataaactt-taaaaaa-atgctcagcatcactaataatcagggaaatgcaaatcgaaatcacaatgcgatacga-cttgctcctgcaagaatggccataatcaaaaaaaaaaaaaaa-caatagatgttggagtggatgtggtgatcaggggacacttctacacggctggtgggaacgtaaactagtgcag-ccacta---tggaaaacagtgtggagattccttaaagaactaaaagtagaactatcatttgatccaacaatcccactactgggtatctactc-agaggaaaagaagtcattatgctaaaa--agatacttgcacacacacatttgtagcagcacaattcacaattgcaaaatcacagaaccaacccaaatgcccatccatcagtgagtggataaagaaactgtgggctgggcacagtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggcgaaat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1919008 736 - 2193130 TAAAAATAT--ATGCACACAGTTTTATACGTAATGCGGCATCACACCCTGTAGGGCATTTACTCTTATTTTATACATTCAGATATG--TT-----TTTTTTTTTGAAACACTTCTTAAGGATACACAACAGCACAGAG--AAATAAACAGGAACATATTCAACAATTACAACACATGGTATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATATTTCAAGAGATACGTATATAAACTT-TAAaaaaaatgctcaacatcactaatgatcagggaaatgcaaatcaagatcacaatgcgatacgaccttactcctgcaagaatggccataatcaaaaaatcagaaaa--caatagatgttggcatggatgtggtgatcaggggacacttctacactgctggtgggaatgtaaactagtacag-ccacta---tggaaagcagtgtggagattccttaaagaactaagggtagaactatcatttgatccagcaatcccactactgggtacctactc-agaggaaaagaagtcattatgcgaaaa--agttacttgcacacacacatttgtagcagcacaattcacaattgcaaaaccgcagaaccaacccaaatgcccatccatcagtgagtggataaagaaactgtgggccggacacagtggctcacacctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29993343 740 - 77216781 TAAAAATAT--ACGCACACAGTTTTATATATAATGCAGCATCACACTTTGTAGGGCATTTACTCTTATTTTACGCATTCAGGTATG--TTTG----TTTTTTTTGAAACACTTCTTAAGGCTACACAACAGAACATAGAAAAATAAACAGGAACATATTCAACAATTACAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATACTTCAAAAGATATGTATATAAACTT-TAAaaaaaatgctcaacatcactaatgatcagggaaatgcaaatcaaaatcacaatgcgataccaccttgctcctgcaagaatgaccatcatcaaaaaatcaaaaa---cggtcgatgttggcgtgggtgcggcgatcaagggacacttctacactgctggtgggaatggaaacta-tacag-ccacta---tggaaaacagtgtgcagatcccttaaagaactaaaagtagatctatcatttgatccagcaatcccaccactgggtgtctactctagaggaagggaagtcattatgcagaaaacacatacttgcacacacacattttaaggagcacaattcacaattgcaaaatcgcggaaccaacccaaatgtccatcaatcaaagagtggataaagaaactgtgggccgggcacagtggctcacacctgtaatcgcagcactttgggaggtcaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27905946 740 - 80997621 TAAAAATAT--ACGCACACAGTTTTATATATAATGCAGCATCACACTTTGTAGGGCATTTACTCTTATTTTACGCATTCAGGTATG--TTTG----TTTTTTTTGAAACACTTCTTAAGGCTACACAACAGAACATAGAAAAATAAACAGGAACATATTCAACAATTACAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATACTTCAAAAGATATGTATATAAACTT-TAAaaaaaatgctcaacatcactaatgatcagggaaatgcaaatcaaaatcacaatgcgataccaccttgctcctgcaagaatgaccatcatcaaaaaatcaaaaa---cggtcgatgttggcgtgggtgcggcgatcaagggacacttctacactgctggtgggaatggaaacta-tacag-ccacta---tggaaaacagtgtgcagatcccttaaagaactaaaagtagatctatcatttgatccagcaatcccaccactgggtgtctactctagaggaagggaagtcattatgcagaaaacacatacttgcacacacacattttaaggagcacaattcacaattgcaaaatcgcggaaccaacccaaatgtccatcaatcaaagagtggataaagaaactgtgggccgggcacagtggctcacacctgtaatcccagcactttgggaggtcaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1959411 739 + 10377808 TAAAAATAT--ACGCACACAGTTTTATATATAATGCAGCATCACACTTTGTAGGGCATTTACTCTTATTTTACGCATTCAGATATG--TTTG-----TTTTTTTGAAACACTTCTTAAGGCTACACAACAGAACATAGAAAAATAAACAGGAACATATTCAACAATTACAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATACTTCAAAAGATATGTATATAAACTT-TAAaaaaaatgctcaacatcactaatgatcagggaaatgcaaatcaaaatcacaatgcgataccaccttgctcctgcaagaatgaccatcatcaaaaaatcaaaaa---cagtcgatgttggcgtgggtgcggcgatcaagggacacttctatactgctggtgggaatggaaacta-tacag-cgacta---tggaaaacagtgtgcagatcccttaaagaactaaaagtagatctatcatttgatccagcaatcccaccactgggtgtctactctagaggaagggaagtcattatgcagaaaacacatacttgcacacacacattttaaggagcacaattcacaattgcaaaatcgcggaaccaacccaaatgtccatcaatcaaagagtggataaagaaactgtgggccgggcacagtggctcacacctgtaatcccagcactttgggaggtcaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1849326 741 - 8458610 TAAAAATAT--ACGCACACAGTTTTATATATAATGCAGCATCACACCTTGTAGGGCATTTACTCTTATTTTACGCATTCAGATATG--TTTG---TTTTTTTTTGAAACACTTCTTAAGGCTACACAACAGAACATAGAAAAATAAACAGGAACATATTCAACAGTTACAAAACATGATATGATAAAGAATATAAAGTACTAGTTTCCTTTCAATACTTCAAAAGAAATGTATATAAACTT-TAAaaaaaatactcaacatcactaatgatcagggaaatgcaaatcaaaatcacaatgcaataccaccttgctcctgcaagaatgaccatcatcaaaaaatcaaaaa---cggtcgatgttggcgtgggtgcggcgatcaagggacacttctacactgctggtgggaatggaaacta-tacag-ccacta---tggaaaacagtgtgcagatcccttaaagaactcaaagtagaactaccatttgatccagcaatcccaccactgggtgtctactctagaggaagggaagtcattatgcggaaaacacatacttgcacacacacattttaaggagcacaattcacaattgcaaaatcgcggaaccaacccaaatgcccatcagtcaacgagtggataaagaaactgtgggccgggcatagtggctcacacctgtaatcccagcactttgggaggtcaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64805650 737 + 75148670 TAAAAATAT--ACGCACACAGTTTTATATATAATGCAGCATCACACCTTGTAGGGCATTTACTCTTATTTTACGCATTCAGATATG--TTTG----TTTTTTTTGAAACACTTCTTAAGGCTACACAACAgaacatagaaaaataaacaggaacagattcaacaattacaaaacatgatatgataaagaatataaagtattagtttcctttcaaaacttcaaaagatatgtctataaactt-taaaaaaaatgctcaacatcactagtgatcagggaaatgcaaatcaaaatcacaatgtgataccaccttgctcctgcaagaatggccatcatcaaaaaatcaaaaa---cggtagatgttggcgtgggtgcggcgatcaagggacacttctac-ttgctggtgggaatggaaacta-tatag-ccacta---tggaaaacagtgtgcagatcccttaaagaaataaaagtagatctaccatttgatccagcaatcccaccactgggtatctactctagaggaagggaagtcattatgcgaaaa--agatacttgcacacacacattttaaggagcacaattcacaattgcaaaattgtggaaccaacccaaatgctcatcaatcaacgagtggataaagaagctgtgggctgggcacagtggctcacacctgtaatcccagcactttgggaggtcaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2017711 740 + 4244037 TAAAAATAT--ACGCACACAGTTTTATATATAATGCAGCATCACACCTTGTAGGGCATTTACTCTTATTTTACGCATTCAGATATG--TTTG----TTTTTTTTGAAACACTTCTTAAGGCTAtacaacagaacatagaaaaataaacaggaacatattcaacaattacaaaacatgatatgataaagaatataaagtactagtttcctttcaatacttcaaaagatatgtatataaactt-taaaaaaaatgctcaacatcactaatgatcagggaaatgcaaatcaaaatcacaatgcgataccaccttgctcctgcaagaatgaccatcatcaaaaaatcaaaaa---cggtcgatgttggcgtgggtgcggcgatcaagggacacttctacactgctggtgggaatggaaacta-tacag-ccacta---tggaaaacagtgtgcagatcccttaaagaactaaaagtagatctaccatttgatccagcaatcctaccactgggtgtctactctagaggaagggaagtcattatgcggaaaacacatacttgcacacacacattttaaggagcacaattcacaattgcaaaatcgcggaaccaacccaaatgcccatcaatcaacgagtggataaagaaactgtgggctgggcacagtggctcacacctgtaatcccagcactttgggaggtcaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacatggtgaaac i manLeu1.NW_012106252v1 C 0 I 11303 s colAng1.NW_012122154v1 2056049 737 + 4569836 AAAAAATAT--ATGCACACAGTTTTATATATAATGCAGCATCACACCTTGTAGGGCATTTACTCTTATTTTATGCATTCAGATATG--TTTG----TTTTTTTTGAAACACTTCTTAAGGCTACACAACAGAACATAGAAAAATAAACAGGAACATATTCAACAATTACAAAACATGATATGATAAAGAATATACAGTACTAGTTTCCTTTCAATACTTTAAAAGATATGTATATAAACTT-TAAaaaaaatgctcaacatcactaatgatcagggaaacgcaaatcaaaatcacaatgcgataccaccttgctcctacaagaatgaccataatcaaaaaatcaaaaa---cagtagatgttggcatgggtacggcgatcaagggacacttctacactgctggtgggaatggaaacta-tacag-ccacta---tggaaaacagtgtgcagatcccttaaagaactaaaagtagatctaccatttaatccagcaatcccaccactgggtatctactc-agaggaagggaagtcattatgcaaaaa--agatacttgcacacacacattttaagaagcacaattcacaattgcaaaatcgcggaaccaacccaaatgcccatcaatcaacaagtggataaagaaactgtgggccgggtacagtggctcacacctgtaatcccagcactttgggaggacaaggtgggtggatcatctgaggtcaggagttcaagaccagcctggccaacacggtgaaac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46022206 732 - 159171411 CAAAAAAAG-TATGCATACAGTTTTATATATAATTCGGCATCACACCTAGTAGGGCATTCACTCTTATTTTATGCATTCAGATATG--GTTG---TTTTTTTTTGAAACAC-----AAGTCTACACAACAGAACACAGGAAAATAAACAGGAATGTATTCAACAGTTACAAAATGTGATATGATAAAGAATATGAAGTACTAGTTTCCTTTCAGTACTTCAAAAGTTATGTATATAAACTT-TCTaaaaaaagcccaacatcattaacgaccagggaaatgcaaatcaaaatcacaatgcgataccacctcgctcctgcaagaatggccataataaaaaat-aaaaac---cagcagatgttggtggagatgtggtgatcagggaacacttctatgctgctggtgggaatgtaacctagtccac-ctgcta---tggaaaacagtgtggagatcccttaaagaactaaaagtagaattaccatttgatccagcaattccactactgggtatctaccc-aggagaaaataagtcattatacgaaaa--agatgct--tacacacacgtttatagaagcacaattcacaattgcaaaatcgtggagccaaccccaacaatcatcaatcaatgagtggataaagaaactgtgggccaggcatggtggctcatgcctgtaatcccagcactttgggaggctgaggtgaatggattacctgaggtcaggagttcgagaccagcctggccaacatggggaaac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1748493 742 + 3513951 TAAAAAAAA--AAGCACACAGTTTTATATATAATTTGGCATCACACCTATTAGGGCATCCACTCTTATTTTATACATTCAGATATGTTTTTT---TTTTTTTTTGAAACTCTTCTTAAGGCTACACAACAGAACATAGGAAAATAAACAGGAATGTATTCAACAATTACAAAACATGATATGATAAAGAATACAAAGTACTAGTTTCCTTTCAGTACTTCAAAAGATATGTATATAAACTT-TAAACaaaaagctcgacgtcactaacgattagggaaatgcaaatcaaaatcacaatgcgataccggcttgcttctgtaagaatggccataatcaaaaataaaaaac---cagcagacgttggcgtggatgcggtgatcagggaacacttctacactgctggtggggatgtaaaccagtacaagctgcta---tggaaaacagtgcggagattccttaaagaactaaaagtagaactaccatttgatccagcaatcccactactgggtgtctatca-cgaagaaaagaagtcattatacaaaaa--agatgcttgtacacgcatgtttgtagaagcacaattcgcaattgcaaaatcgtggagccagcccaaacgaccatcaatcaatgagtggataaagaaactgtgggccgggcatggtggctcatgcctacaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggcctatatgctgaaac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1798002 736 + 1920343 TAAAAAAAT--ACGCATACAGTTTTATATATAATTTGGCATCACACCTAGTAGGGCACCCACTCTTATTTTATACATTCAGA------TTTT---TTTTTTTTTGAAACTCTTCTTAAGGCTACGCAACAGAACATAGGAAAATAAAGAGGAATGTATTCAACAATTACAAAACATGATATGATAAAGGATACAAAGTACTAGTTTCCATTCAGTACTTCAAGAGATATGTATATAAACTGAAAAaaaaaaagctcaacatcactaactatcagggaagtgcaaattaaaatcacaatgcgataccaccttgctcctgcaagaatggccataataaaaaataaaaaac---cagcagaggttggtggggatgtggtgatcagggaacacttctatgctgctggtgggaatgtaaactagtacag-ctgctagtttggaaaacactgtggagattccttaaagaactaaaagtagaactaccatttgatccagcaatcccactactgggtatctaccc-agaagaaaagacgtc---atatgaaaa--agatgcttgtacacgcatgtttatagaagcacaattcacaattgcaaaatcgtggatccaacccaaacgaccatcaatcaatgagtggataaagaaactgtgggccgggcagggtggcttatgcctataatccgagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggctaacatggtgaaac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6909019 735 - 7032639 TAAAAAAATATATGCATACAGTTTTATATATAATTCGGCATCACACCTAGTAGGGCATCCACTCTTATTTTATACATTCAGA--------TT---TTTTTTTTTGAAACTTTTCTTAAGGCTACACAATAGGACATAGGAAAATAAACAGGAATGTAGTCAACAATTCCAAAACATGATATGATAAGGAACACAAAGTACTAATTTCCTTTCAGTACTTCAAAAGATATGTATATAAACTTTTAAaaaaaaagctcaacatcactaacgatcagggaaatgcaaatcaaaatcacaatgcgataccaccttgcgcctgcaagaatggctataataaaaaataaaaaac---cagtagatgttggtg-ggatgtggtgatcagggaacacttctacgctgctggtgagaatgtaaactagtacag-ccgcta---tggaaaacagtgtggagattccttaaagaactaaaagtagaactaccatttgagccagcaatcccactactgggtatctaccc-agaagaaaagaagtcattatacgaaaa--agatgcttgcacacgcatgtttatggcagcacaatttgcaattgcaaaattgtggagccaacccaaacaaccatcaatcaatgagtggataaagaaactgtgggccgggcatggtggctcatgcctataatcccagcactttgagaggctgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccgatatggtgaaac i aotNan1.NW_018502359v1 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e dasNov3.JH570468 309621 0 - 852752 C e canFam3.chr9 21338722 27 + 61074082 I e otoGar3.GL873537 22721425 0 + 28711273 C a score=740938.000000 s hg38.chr17_GL383564v2_alt 5144 88 + 133151 accttctttactaaaaatacaaaaattagctgggcatggtggtggcacctgtaatcccagctactcgggaagctgaggcaggagaatc s panTro5.chr17 16199009 88 + 83181570 accttctttactaaaaatacaaaaattagccgggcatggtggtggcacctgtaatcccagctactcgggaagctgaggcaggagaatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16106372 88 + 83442489 accttctttactaaaaatacaaaaattagccgggcatggtggtggcacctgtaatcccagctactcgggaagctgaggcaggagaatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3941494 87 + 4267968 gccttctttactaaaaatacaaaaattagccgggcatggtggtggcacc-gtaatcccagctacttgggaagctgaggcaggagaatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1919744 88 - 2193130 cccttctgtactaaaaatacaaaaattagccgggcatggtggcggcacctgtaatcccagctactcgggaagctgaagcaggagaatc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29994083 88 - 77216781 cctttctctactaaaaatacaaaaattagccgggcatggttgcagcacctgtaatcccagctactcgggaggctgaggcaggagaatc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27906686 88 - 80997621 cctttctctactaaaaatacaaaaattagccgggcatggttgcagcacctgtaatcccagctactcgggaggctgaggcaggagaatc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1960150 88 + 10377808 cctttctctactaaaaatacaaaaattagccgggcatggttgcagcacctgtaatcccagctactcgggaggctgaggcaggagaatc i macNem1.NW_012014910v1 C 0 M 5564 s cerAty1.NW_012006043v1 1850067 88 - 8458610 cctttctctactaaaaatacaaaaattagccgggcatggttgcagcacctgtaatcccagctactcgggaggctgaggcaggagaatc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64806387 88 + 75148670 cccttctctactaaaaacacaaaaattagccgggcatggttgcagcacctgtaatcccagctactcgggaggctgaggcaggagaatc i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2056786 88 + 4569836 cccttctctactaaaaatacaaaaattagctgggcatggttgcagcacctataagcccagctactcaggaggctgaggcaggagaatc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46022938 88 - 159171411 ctaatctctactaaaaatacaaaaattagctaggcatggtggcggcacctgcaatctctgctactcaggagactgaggcaggagaatc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1749235 88 + 3513951 cctgtctctactaaaaatacaacaattagccaggcatggtggcggcacctgtaatctctgctactctggagactgaggcagaagaatc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1798738 88 + 1920343 cctgtctctactaaaaatacaaaaattagccaggcatgatggtggcacctgcaatctctgctactcgggagactgaggcaggagaatc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6909754 88 - 7032639 cctgtctctaccgaaaatacaaaaattaaccaggcatggtggtggcacctgcaatctctgctactcgggagactgaggcaggagaatc i aotNan1.NW_018502359v1 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e dasNov3.JH570468 309621 0 - 852752 C e canFam3.chr9 21338722 27 + 61074082 I e otoGar3.GL873537 22721425 0 + 28711273 C e manLeu1.NW_012106252v1 2018451 11303 + 4244037 I a score=562294.000000 s hg38.chr17_GL383564v2_alt 5232 103 + 133151 tcttgaacctgggaggtggaggttgcagtgagccgagatggtgccactgcactccagcctgggttac-------------------------------------------------aagagtgaagctctatct--------------caaaaaaaaaaaaaaa------------ga s panTro5.chr17 16199097 111 + 83181570 tcttgaacctgggaggtggaggttgcagtgagccgagatggtgccactgcactccagcctgggttac-------------------------------------------------aagagtgaagctctatct--------------caaaaaaaaaaaaaaa----aaaaaaaaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16106460 111 + 83442489 tcttgaacctgggaggtggaggttgcagtgagccgagatggtgccactgcactccagcctgggttac-------------------------------------------------aagagtgaagctctatct--------------acaaaaaaaaaaaaaa----aaaaaaagaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3941581 114 + 4267968 tcttgaacttgggaggtggaggttgcagtgagccgagatggtgccactgcactccagcctgggttac-------------------------------------------------aagagtgaagctctatct--------------caaaaaaaaaaaaaaa-aaaaaaaaaaaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1919832 115 - 2193130 tcttgaacctcagaggtggaggttgcagtgagccgagatggtgccactgcactccagcctgggttac-------------------------------------------------aagagtgaagctctacct--------------caaaaaaaaaaaaaaaaaaaaaaagaaaga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29994171 103 - 77216781 acttgaacctgggaggcggaggttgcagtgagctgagatggtgccactgcactccagccagggttac-------------------------------------------------aagagtgaaactctatct------------aaaaaaaaaaaaaaaaaa-------------- i rheMac8.chr16 C 0 I 3 s macFas5.chr16 27906774 101 - 80997621 acttgaacctgggaggcggaggttgcagtgagctgagatggtgccactgcactccagccagggttac-------------------------------------------------aagagtgaaactctatct--------------aaaaaaaaaaaaaaaa-------------- i macFas5.chr16 C 0 I 3 s cerAty1.NW_012006043v1 1850155 106 - 8458610 acttgaacctgggaggcggaggttgcagtgagctgagatggtgccactgcactccagccagggttac-------------------------------------------------aagagtgaaactctatctaa---------aaaaaaaaaaaaaaaaaaa-------------- i cerAty1.NW_012006043v1 C 0 I 3 s chlSab2.chr16 64806475 102 + 75148670 acttgaacctgggaggcggaggttgcagtgagctgagatggtgccactgcactccagccagggttac-------------------------------------------------aagagtgaaactctatct-------------aaaaaaaaaaaaaaaaa-------------- i chlSab2.chr16 C 0 I 3 s colAng1.NW_012122154v1 2056874 101 + 4569836 acttgaacctgggaggcggaggttgcagtgagctgagatggtgccactgcactccagccagcattac-------------------------------------------------aagagtgaaactctatct--------------aaaaaaaaaaaaaaga-------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023026 87 - 159171411 acttgaacccaggaggtggaggttgcagtaagctgagatggcaccactgca------cctgggctac-------------------------------------------------aagagtgaaa--ctgtctca--------------------aaaaaaga-------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1749323 108 + 3513951 acttgaacccaggaggtggaggttgcagtaagccgaaatggcaccactgca------cctgggctac-------------------------------------------------aagagtgaaactctgtctca-aaaaaaaaaaaaaagaaacaaaaaaga-------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1798826 139 + 1920343 acttgaacccaggaggtggaggttggagtgagccgagatggcaccactgcg------cctgggcTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaa-------------------aaaaaagaaaCAGAaaaga-------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6909842 109 - 7032639 acttgaacccaggaggtggaggttgcagtaagccgagatggcaccactgca------cctgggctac-------------------------------------------------aagagtgaaactctgtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaga-------------- i aotNan1.NW_018502359v1 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e dasNov3.JH570468 309621 0 - 852752 C e canFam3.chr9 21338722 27 + 61074082 I e otoGar3.GL873537 22721425 0 + 28711273 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M e manLeu1.NW_012106252v1 2018451 11303 + 4244037 I a score=6727991.000000 s hg38.chr17_GL383564v2_alt 5335 876 + 133151 aactgtggtacatatatatgatgaaatactactcagccataaaaaggatgaattaatggcacttgtagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcatatattgtcactgatatgtgggagctaagctatgaggatgcaaaggcataagaatgatacaatggactttgaggacttcgggggaagggagcgg-gtgagggataaaagactacaaataggatgcagtgtatactgcttggctgatgggtgcaccaaaatctcacaaatcaccaccaaagaacttactcacgtaacccacctgtgccccaatacttatgg-aaaaaaaCCCCACCACTTATGGAAAAAATACCACCTGTACCCCAATAACTTACGG-AAAAAAA-CCTAAACTTTTT-TTTTATAAGTAACATCACAGATGCTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCAGCCCCAAAGTTGTTGCTTCCCAGCATTAAGTCCTGCGCCCACCCCTCTTCTAAGA--TTTTCTAAAACTTGTATTTCAGAGG--AAAAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACGATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAAGACTTAAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTAATTGGGATTTTTTTTTTTTT-------AAAGAG s panTro5.chr17 16199208 880 + 83181570 aactgtggtacatatatatgatgaaatactactcagccataaaaaggatgaattaatggcacttgtagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcatatattgtcactgatatgtgggagctaagctatgaggatgcaaaggcataagaatgatacaatggactttggggacttcgggggaagggagcgg-gtgagggataaaagactacaaataggatgcagtgtatactgcttggctgatgggtgcaccaaaatctcacaaatcaccaccaaataacttactcacgtaacccacctgtgccccaatacttatgg-aaaaaaaCCCCACCACTTATGGAAAAAATACCACCTGTACCCCAATAACTTACGG-AAAAAAAACCTAAACTTTTT-TTTTATAAGTAACATCACAGATGCTTACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGCATAACAATGCAATTTGTAATCCATTCAAGTAAATTCAGCCCCAAAGTTGTCGCTTCCCAGCATTAAGTCCTGCGCCCACCCCTCTTCTAAGA--TTTTCTAAAACTTGTATTTCAGGGG--AAAAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACGATTTCTGTTTATTGCATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAAGACTTAAGGTTTTGCTACTAGTATCAGCCATTTGTTTTCCCACTAATTGGGATTTTTTTTTTTTT----TTTAAAGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16106571 874 + 83442489 aactgtggtacatatatatgaggaaatactactcagccataaaaaggatgaattaatggcacttgtagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcatatattgtcactgatatgtgggagctaagctatgaggatgcaaaggcataagaatgatacaatggactttggggacttcgggggaagggagcgg-gtgagggataaaagactacaaataggatgcagtgtatactgcttggctgatgggtgcaccaaaatctcacaaatcaccaccaaataacttactcacgtaacccacctgtgccccaatacttatgg-aaaaaaaCCCCACCACTTATGGAAAAAATACCACCTGTACCCCAATAACTTACGG-AAAAAAA-CCTAAAC-TTTT-TTTTATAAGTAACATCACAGATGTTTACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGCGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCAGCCCCAAAGTTGTCGCTTCCCAGCATTAAGTCCTGCGCCCACCCCTCTTCTAAGA--TTTTCTAAAACTTGTATTTCAGGGG--AAAAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACGATTTCTGTTTATTGTATTTTGCTTCCTATTTTATATCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAAGACTTAAGGTTTTGCTACTAGTATCAGCCATTTGTTTTCCCACTAATTGGGATTTTTTTTTTTA--------AAAGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3941695 871 + 4267968 aactgtggtacatatatatgatgaaatactactcagccataaaaaggatgaattaatggcacttgtagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcatatattgtcactgatatgtgggagctaagctatgaggatgcaaaggcataagaatgatacaatggactttggggacttcgggggaagggagcgg-gtgagggataaaagactacaaataggatgcagtgtatactgcttggctgatgggtacaccaaaatctcacaaatcaccaccaaagaacttactcacgtaacccacctgtg-cccaatacttatgg-aaaaaaGCCCCACCACTTATGGAAAAAATATCACCTGTACCCCAATAACTTACGG-AAAAAAAACCTAAACTTTTT-TTTTATAAGTAACATCACAG--------ATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCAGCCCCAAAGTTGTTGCTTCCCAGCATTAAGTCCAGCGCCCACCCCTCTTCTAAGA--TTTTCTAAAACTTGTATTTCAGGGG--AAAAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACGATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTACGTCAATTTCAAAGACTTCAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTAATTGGGATTTTTTTTTTTTT----TTTAAAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1919947 884 - 2193130 aactgtggtacacatatatgatgaaatactactcagccataaaaaggatgaattagtggcatttgcagtgacctggatgagattggaaactattattctaagtgaagtaactcaagaatggaa--------aaccaaacatcatatattctcagtgatatgtgggagctaagctatgaggatgcaaaggcataagaatgatacaatggactttggggacttggggggaagggagcgg-gtgagggttaatagactacaaataggatgcagtgtatactgcttggctgatgggcacaccaaaatctcacaaatcacctccaaagaacttactcatgtaacccacctgcaccccaatacttatgg-aaaaaaaCCCCACCACTTATGGAAAAAATACCACCTGTACCCCAAGAACTTACGG-AAAAAAAACCTAAACTTTTT-TTTAATAAGTAACATCACAGATGCTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATAGATAAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAATAAATTCAACCCCAAAGTTTTTGCTTCCCAGCATTAAGACCTGCGCCCATTCGTCTTCTAAGA--TTTTCTAAAACTTGTATTTCAGGGG--AAAAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCCATTTTATGTCTAAATCCTATTTTTTTCATTTAAAATCTTAATGATGGCTCATTTCCAGTATGTCAATTTCAAAGACTTAAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTAACTGGGtttttttttttttttttttttAAAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29994277 862 - 77216781 aactgtggtacatatatatgattaaatactactcagccataaaatagatgaattaatggcattcgcagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcgtatattctcactgatatgtgggagctaagctatgaggatgcgaaggcgtaagaatgatacaatggattttgggaacttgcggggaggggagggg-gtgagggataaaaaactacaagtaggatgtagtgtatactgcttgggtgatgggtgtaccaaaatctcacaaatcactgctaaagaacttactcatgtaacccacctataccccaatactcatggaaaaaaaaTCCCATCACTTATGGAAAAAATACCACCTGTACCCCAATAATGTATGG-AAAAAAC-CCTAAACTTTTTCTTTTACAAGTAACATAACAGATGCTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCACCCCCAAAGTTGTTGCTTCCCAGCATTAAGACCTGCACCCACCCC-CTTCTAAGA-TTTTTCTAAAACTTGT--------------AAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAATATTTAAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTTATTGGGA----TTTTTTTTA-------AAAGAG i rheMac8.chr16 I 3 C 0 s macFas5.chr16 27906878 862 - 80997621 aactgtggtacatatatatgattaaatactactcagccataaaatagatgaattaatggcattcgcagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcgtatattctcactgatatgtgggagctaagctatgaggatgcgaaggcgtaagaatgatacaatggattttgggaacttgcggggaggggagggg-gtgagggataaaagactacaagtaggatgtagtgtatactgcttgggtgatgggtgtaccaaaatctcacaaatcactgctaaagaacttactcatgtaacccacctataccccaatactcatggaaaaaaaaTCCCATCACTTATGGAAAAAATACCACCTGTACCCCAATAATGTATGG-AAAAAAC-CCTAAACTTTTTCTTTTACAAGTAACATAACAGATGCTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCACCCCCAAAGTTGTTGCTTCCCAGCATTAAGACCTGCACCCACCCC-CTTCTAAGA-TTTTTCTAAAACTTGT--------------AAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAATATTTAAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTTATTGGGA----TTTTTTTTA-------AAAGAG i macFas5.chr16 I 3 C 0 s cerAty1.NW_012006043v1 1850264 860 - 8458610 aactgtggtacatatatatgattaaatactactcagccataaaaaggatgaattaatggcattcgcagtgacct-gatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcgtatattctcactgatatgtgggagctaagctatgaggatgcgaaggcgtaagaatgatacaatggactttgggaacttgcggggaggggagggg-gtgagggataaaagactacaagtaggatgcagtgtatactgcttgggtgatgggtgtaccaaaatctcacaaatcactgctaaagaacttactcatgtaacccacctataccccaatacttatgggaaaaaaaTCCCATCACTCATGGAAAAAATACCACCTGTACCCCAATAACGTATGG--AAAAAC-CCTAAACTTTTTCTTTTACAAGTAACATAACAGATGCTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCACCCCCAAAGTTGTTGCTTCCCAGCATTAAGACCTGCACCCACCCCTCTTCTAAGA-TTTTTCTAAAACTTGC--------------AGAAGTGTAGCTGAAAGGAATGCATATTTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAATATTTAAGGTTTTGCTACTAGTATCAACCATTTACTTTCCCACTTATTGGGA-----TTTTTTAA-------AAAGAG i cerAty1.NW_012006043v1 I 3 C 0 s chlSab2.chr16 64806580 863 + 75148670 aactttggtacatatatatgattaaatactactcagccataaaaaggatgaattaatggcatttgcagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcgtatattctcactgatatgtgggagctaagctatgaggatgtgaaggcgtaagaatgatacaatggactttgggaacttgctgggaggggagggg-gtgagggataaaagactacaagtaagatgcagtgtatactgcttgggtgatgggtgcaccaaaaccttacaaatcactgctaaagaacttactcatgtgacccacctataccccaatatttatggaaaaaaaaTCCCATCACTTATGGAAAAAATACCACCTGTACCCCAATAACGTATGG-AAAAAAC-CCTAAACTTTTTCTTTTACAAGTAACATAACAGATACTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG-TTTTTTTTAGCTGTGTAACAGTGCAATTTGTAACCCATTCAAGTAAATTCACCCCCAAAGTTGTTGCTTCCCAGCATTAAGACCTGCACCCACTCCTCTTCTAAGATTTTTTCTAAAACTTGT--------------AAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAATATTTAAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTTATTGGGA-----TTTTTTTA-------AAAGAG i chlSab2.chr16 I 3 C 0 s manLeu1.NW_012106252v1 2029754 862 + 4244037 aactgtggtacatatatatgattaaatactactcagccataaaatggatgaattaatggcattcgcagtgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcgtatattctcactgatatgtgggagctaagctatgaggatgcgaaggcgtaagaatgatacaatggattttgggaacttgcggggaggggagggg-gtgagggataaaagactacaagtaggatgcagtgtatactgcttgggtgatgggtgtaccaaaatctcacaaatcactgctaaagaacttactcatgtaacccacctataccccaatactcatggaaaaaaaaTCCCATCACTTATGGGAAAAATACCACCTGTACCCCAATAATGTATGG-AAAAAAC-CCTAAACTTTTTCTTTTACAAGTAACATAACAGATGCTCACATCTTCACACGCTTT----TAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATGAAG-TTTTTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCACCCCCAAAGTTGTTGCTTCCCAGCATTAAGACCTGCACCCACCCCTCTTCTAAGA-TTTTTCTAAAACTTGT--------------AAAAGTGTAGCTGAAGGGAATGCATATTTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAATATTTAAGGTTTTGCTACTAGTATCAGCCATTTACTTTCCCACTTATTGGGA-----TTTTTTTA-------AAAGAG i manLeu1.NW_012106252v1 I 11303 C 0 s colAng1.NW_012122154v1 2056975 858 + 4569836 aactgtagtatatatatatgatgaaatactacctagccataaaaagcatgaattaatggtatttgcagcgacctggatgagattggagactattattctaagtgaagtaactcaggaatggaa--------aaccaaacatcgtatattctcactgacatgtaggagctaagctgtgaggatgcaaaggcctaagaatgatacaatggactttgggaactt-----ggggggagggg-gtgaaggataaaagactacaaataggatgcagtgtatactgcttgggtgatgggtgcaccaaaatctcacaaatcactactaaagaacttactcatataacccacctgtaccccaatacttatgaaaaaaaaGCCCCATCACTTATGGAAAAAATACCACCTGTACCCCAATAATGTATGGAAAAAAAC-CCTAAACTGTTTCTTTTACAAGTAACATAACAGATGCTCACATCTTCACATACTTT----AAAGTATTATTTGTACTCAGTGTAAGGCTATTATCATTTTTCATACATAAAG----TTTTTAGCTGTGTAACAATGCAATTTGTAATCCATTCAAGTAAATTCACCCCCAAAGTTGTTGCTTCCCAATATTAAGACCTGCACCCAACCCTCTTCTAAGA-TTCTT-TAAAACTTAT--------------AAAAGCGTAGCTGAAGGGAATGCATATCTGATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTTGCTTCCTATTTTATGTCTAAATCCTATTATTTTCATTTAAAATCTTAATAATGGCTCATTTCCAGTATGTCAATTTCAAAGATTTAAGGTTTGGCTACTAGTATCAGCCATTTACTTTCACACTAATTGGGA-TTTTTTTTTTTT-------AAAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023113 822 - 159171411 aactgtggtacatgtatacaatgaaatactactcagccataaaaaggacgaattaatgggatttgcagcgacttggatgagactggagactgttattctaaatgaagtaactcaggaatggaa----aaccaaccaaagaacatatgttcttaccgatatatgggagctaagctatgagggtgcaaaggcataagaataacacaatggactttggggacttgtggggaagggaggggagcgagggataaaaggctacaaatag--tgtaatgtatactgcttgggtgctgggtgcaccaaaatctcacaaatcaccacaaaagaacttactcaggtactc-------------------------------------------------ggataccacctgcacctcaataacttatgg-aaaaaa--CCTAAAC--TTT-TTTTACAAGTAACATCACAAATGCTCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGACTATTATCATTTTTCATAAATAAAA--TTTTTTTAGCTGTGTAACAATGCAATTTACAATCCATTCAAGCAAATTAAAGCCCAAAGTTGCTGCTTCCCAGCATTAAGACATATACCCACCCTTCTTCTAAGA--CTTTCTAAAACTTGTATTTCAGGGGAAAAAAATGTGTAGCTGAAGGGAGTGCATATTCCATGCCTATTTGGCCACACTATTTCTGT----TGCATTTTGCTTCCTATTGTATGTCTAAATCCTATTATTTTTGTTTAAAATCTTAATAATGGCTCATTTTCAGTATGTCAATCTCAAAGACTTAAGGTTTTGCTGCTAGTACTAGCCATTTACTTTCTCACTAATCAGGA---TTTTTTTTTA-------AAAGAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1749431 824 + 3513951 aaccatggtacatgcatacaatgaaa---tactcagccataaaaaggatgaattaatgggatttgcagcaacctggatgagaccggagactattattctaaatgaagtaactcagaaatggaa----aaccaaccaaacaacatatgttctcactgatatatgggagctaagctatgagggtgcaaaggcataagaataatacaatggtctttggagacttg-ggggaagggaggggagggagggacaaaacgctacaaatag--tgtagtgtacactgcttgggtgct-ggtgcaccaaaatctcacaaatcaccacgaaagaacttactcaggtactc-------------------------------------------------aaataccacctgcaccccaagaacttatgg-aaaaaaC-CCTAAAT-ATTG-TTTTACAAGTAACATCACAAATGCTCACATCTCCACATGCTTTTAAATAAGTATTATTTGTACTCAGTATAAGACTATTATCATTTTTCATAAATACAGCTCTTTTTTAGCTGTGTAACAATGCAATTTATAATCCATTCGAGCAAATTCAACCCCAAAGTTGCTGCTTCCCAGCGTTAAGACATATACCCGCCCCTCTTCTAAGA--CTTTGTAAAACTTGTATTTCAGGGG-AAAAAATGTGTAGCTGAAGGGAGTTCATATTCCATGCCTATTTGGCCACACTATTTCTGT----TGCATTTTGCTTCCTATTGTATGTCTAAATCCAATTATTTTTGTTTAAAATCTTAATAATGGCTCATTTTCAGTATGTCAGTCTCAAAGACTTAAGGTTTTGCTGCTAGTACTGGCCATTTACTTTCTCACTAATTGGGA---TTTTTTTTTA-------AAAGAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1798965 821 + 1920343 aaccgtggtacatatatacaatgaaatactactcagccataaaaaggatgaattaacgggatttgcagcgacctggatgagactggagactattattctacacaaagtaactcaggaatgcaa----aaccagccaaacaacatatgttctcaccaatatatgggagctaagctatcagggtgcaaaggcataagaataatacaatggactttggggacttggggggacgggaggggagtgagggataaaaggctacaaatag--tgtagtgtatactgctcaggtactgggtgcgccaaaatctcacaaatcaccactaaagagcttactcaggtactc-------------------------------------------------aaataccacctgtgcctcaataacttatgg-aaaaaa--CCTAAAG-TTTT-TTTTACAAGTAACATCACAAATGCTCACATCTTCACATGTTTT----TAAGTATTACTTGTTCTCAGTGTAAGGCTATTATTATTTTTCATAAATAAAG-TTTTTTTAAGCTGTGTAACAATGCAATTTATAATCCATTCAAGCAAATTCAACCCCAAAGTTGCTGCTTCCCAGCATTAAGACATATACCCACCCCTCTTCTAAGA--CTTTCTAAAACTTGTATTTCAGGGG-AAAAAAAGTGTAGCTGTAGGGAGTGCATATTCCATGCCTATTTGGCCACACTATTTCTGT----TGCATTTTGCTTCCTATTGTATGTCTAAATCCTATTATTTTTGTTTAAAATCTTAATAATGGCTCATTTTCAGTATGTCAATCTCAAAGACTTAAGGTTTTGCTGCTAGTACCAGCCATTTACTTTCTCACTAATTGAGA-----TTTTTTTA-------AAAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6909951 824 - 7032639 aac--tggtacatgtatacaatgaaatactactcagccataaaaaggatgaattaatgggatttgcagcgacctggatgagactggagactattattctaaatgaagtaactcaggaatggaaaaccaaccaaccaaacaacatatgttctcaccgatatatgggagctaagcgatgagggtgcaaaggcataagaataatacaatggactttggggacttggggggaagggaggggagcgagggataaaaggctacgaatag--tgtagtgtatactgctcgggtgctgggtgcaccgaaatctcacaaatcaccactaaagaacttactcaggtactc-------------------------------------------------acataccacctgtacctcaataacttatgg-aaaaaa--CCTAAAC--TTT-TTTTACAAGTAACATCACAAATGATCACATCTTCACATGCTTT----TAAGTATTATTTGTACTCAGTGTAAGACTATTATCATTTTTCATAAATAACG--TTTTTTTAGCTGTGCGACAATGCAATTTATAATCCATTCAAGCAAATTCAACCCCAAAGTTGCTGCTTCCCAGCATTAAGACATATACCCACCCCTCTTCTAAGA--CTTTCTAAAACTTGTATTTCAGGGG-AAAAAAAGTGTAGCTGAAGGGAGTGCATATTCCATGCCTATTTGGCCACACTATTTCTGT----TGCATTTTGCTTCCTACTGTGTGTCTAAATTCTATTATTTTTGTTTAAAATCTTAATAATGGCTCATTTTCAGTATGTCAGTCTCAAAGACTTAAGGTTTTGCTGCTAGTACTAGCCATTTACTTTCTCACTAATTGGGA--TTTTTTTTTTT-------AAAGAG i aotNan1.NW_018502359v1 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e dasNov3.JH570468 309621 0 - 852752 C e canFam3.chr9 21338722 27 + 61074082 I e otoGar3.GL873537 22721425 0 + 28711273 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=13512.000000 s hg38.chr17_GL383564v2_alt 6211 2 + 133151 TT s panTro5.chr17 16200088 2 + 83181570 GT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107445 2 + 83442489 GT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942566 2 + 4267968 GT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920831 2 - 2193130 GT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995139 2 - 77216781 GT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907740 2 - 80997621 GT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851124 2 - 8458610 GT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807443 2 + 75148670 GT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030616 2 + 4244037 GT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057833 2 + 4569836 GT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023935 2 - 159171411 GT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750255 2 + 3513951 GT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1799786 2 + 1920343 GC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6910775 2 - 7032639 GT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22721425 2 + 28711273 TC i otoGar3.GL873537 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e dasNov3.JH570468 309621 0 - 852752 C e canFam3.chr9 21338722 27 + 61074082 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=136557.000000 s hg38.chr17_GL383564v2_alt 6213 13 + 133151 TATTTATACTCTT s panTro5.chr17 16200090 13 + 83181570 TATTTATACTCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107447 13 + 83442489 TATTTATACTCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942568 13 + 4267968 TATTTATACTCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920833 13 - 2193130 TATTTATACTCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995141 13 - 77216781 TATTTACACCCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907742 13 - 80997621 TATTTACACCCTT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851126 13 - 8458610 TATTTATACCTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807445 13 + 75148670 TATTTATACCCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030618 13 + 4244037 TATTTATACCTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057835 13 + 4569836 TGTTTATACTCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023937 13 - 159171411 TATTTATACTGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750257 13 + 3513951 TATTTATACTCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1799788 13 + 1920343 TACTTATACTCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6910777 13 - 7032639 TATTTATACTCTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22721427 13 + 28711273 TATTTACACTCTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338749 13 + 61074082 TAATTATACTCTT i canFam3.chr9 I 27 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e dasNov3.JH570468 309621 0 - 852752 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=218360.000000 s hg38.chr17_GL383564v2_alt 6226 27 + 133151 TTA--------------GAG-CTT----------------GTCCCAT-------GGTCCTTCTGG s panTro5.chr17 16200103 27 + 83181570 TTA--------------GAG-CTT----------------GTCCCAT-------GGTCCTTCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107460 27 + 83442489 TTA--------------GAG-CTT----------------GTCCCAT-------GGTCCTTCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942581 27 + 4267968 TTA--------------GAG-CTT----------------GTCCCAT-------GGTCCTTCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920846 27 - 2193130 TTA--------------GAG-CTT----------------GTCCCAT-------GGTCCTTCTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995154 27 - 77216781 TTA--------------GAG-TTT----------------GTCCCAT-------TGTCCTTCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907755 27 - 80997621 TTA--------------GAG-TTT----------------GTCCCAT-------TGTCCTTCTGG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851139 27 - 8458610 TTA--------------GAG-TTT----------------GTCCCAT-------TGTCCTTCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807458 27 + 75148670 TTA--------------GAG-TTT----------------GTCCCAT-------TGTCCTTCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030631 27 + 4244037 TTA--------------GAG-TTT----------------GTCCCAT-------TGTCCTTCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057848 27 + 4569836 TTA--------------GAG-CTT----------------GTCCCAT-------GGTCCGTCTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023950 26 - 159171411 TTA--------------GAG-CTT----------------GTCCCAT--------GTCCTTCAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750270 26 + 3513951 TTA--------------GAG-CTT----------------GTCCCAT--------GTCCTTCAGG i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1799801 26 + 1920343 TTA--------------GAG-CTT----------------GTCCCAT--------GTCCTTCAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6910790 26 - 7032639 TTA--------------GAG-CTT----------------GTCCCGT--------GTCCTTCAGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22721440 43 + 28711273 TTA--------------GAG-TCTTAGTGGATCTTCCTCAGTCTTTT-------GGTTTCTCTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338762 48 + 61074082 CTGCGGTGTTATCTGATTAG-CTT----------------TTCCTCTGTCTATGGGTCCCTCTAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309621 29 - 852752 TTA--------------GGGTCTT----------------GCCTCAT------TTGTTCTTCTTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e micMur3.chr16 35837851 45 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=230695.000000 s hg38.chr17_GL383564v2_alt 6253 20 + 133151 TTTCCCTCTACCACTTGGGA s panTro5.chr17 16200130 20 + 83181570 TTTCCCTCTACCACTTGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107487 20 + 83442489 TTTCCCTCTACCACTTGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942608 20 + 4267968 TTTCCCTCTACCACTTGGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920873 20 - 2193130 TTTCCCTCTACCACTTGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995181 20 - 77216781 TTTCCCTCTACCACTTGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907782 20 - 80997621 TTTCCCTCTACCACTTGGGA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851166 20 - 8458610 TTTCCCTCTACCACTTGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807485 20 + 75148670 TTTCCCTCTACCACTTGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030658 20 + 4244037 TTTCCGTCTACCACTTGGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057875 20 + 4569836 TTTCCTTCTACCACTTGCGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023976 20 - 159171411 TTTCCCTCTACCACATGGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750297 20 + 3513951 TTTCCCTCTGCCACGTGGAA i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1799827 20 + 1920343 TTTCCCTCTACCACGTGGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6910816 20 - 7032639 TTTCCCTCTACCACGTGGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837896 20 - 65901067 TTTCCTTTTACCACTTTGGA i micMur3.chr16 I 45 C 0 s otoGar3.GL873537 22721483 20 + 28711273 TTTCTCTCTACCACTTTGGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338810 20 + 61074082 TTTCCTTCCAGCACTCTGGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309650 16 - 852752 AGTCCTTATGTCCCTT---- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919535 70 + 8555354 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=794172.000000 s hg38.chr17_GL383564v2_alt 6273 67 + 133151 GGGATGACTCCTGGCCACACCCCCATTGGTTGACTT-GTTTTCCAGCTCTACTGGAAATCTCTGGGAT s panTro5.chr17 16200150 67 + 83181570 GGGATGACTCCTGGCCACACCCTCATTGGTTGACTT-GTTTTCCAGCTCTACTGGAAATCTCTGGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107507 67 + 83442489 GGGATGACTCCTGGCCACACCCTCATTGGTTGACTT-GTTTTCCAGCTCTACTGGAAATCTCTGGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942628 67 + 4267968 GGGATGACTCCTGGCCACACCCCCATTGGTTGACTT-GTTTTCCAGCTCTACTGGAAATCTCTGGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920893 67 - 2193130 GGGATGACTCCTGGCCACACCCCCATTGGTTGACTT-GTTCTCCAGCTCTACTGGAAATCTCTGGGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995201 67 - 77216781 GGGATGACTCCTGGCCACACCGTCATTGGTTGACTT-GATCTCCAGCTCCACTGGAAATCTCTGGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907802 67 - 80997621 GGGATGACTCCTGGCCACACCGTCATTGGTTGACTT-GATCTCCAGCTCCACTGGAAATCTCTGGGAT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851186 67 - 8458610 GGGATGACTCCTGGCCACCCCATCATTGGTTGACTT-GTTCTCCAGCTCTACTGGAGATCTCTGGGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807505 67 + 75148670 GGGATGACTCCTGGCCACACCGTCATTGGTTGACTT-GATCTCCAGCTCCACTGGAAATCTCTGGGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030678 67 + 4244037 GGGATGACTCCTGGCCACCCCGTCATTGGTTGACTT-GTTCTCCAGCTCTACTGGAGATCTCTGGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057895 67 + 4569836 GGTATGACTCCTGGCCACACTGCCACTGGTTGACTT-GTTCTCCAGCTCCACTGGAAATCTCTGGGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46023996 67 - 159171411 GGGATGACTCCTGGGCACACAGCCACTGGTTGACTT-GTTCTCCAGCTCTACTGGAAATCTCTGGGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750317 67 + 3513951 GGGATGACTCCTGGGAACACAGCCACTGGTTGACTT-GTTCTCCAGCTGTGCTGGAAATCTCTGGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1799847 36 + 1920343 GGGCTGACTCCTGGGCACAGAGCCACTGGCTGACtt-------------------------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6910836 67 - 7032639 GGGATGAGTCCTCAGCACACGGCCACTGGTTGACTT-GTTCTCCAGCTCCACTGAAAATCTCTGGGAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837916 67 - 65901067 GGGATGATTCCTGGCCCCATAGCCATTGGTTGGCTT-GTTCCCCTGCTCTACTGAAAATCTCTGGGAC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2919605 67 + 8555354 GGGATGATTCCTGGCCACATAGCCATTGGCTGACTT-GTTCCCCAGCTCGACTGAAAGTCTCTGGGAC i proCoq1.NW_012135969v1 I 70 C 0 s otoGar3.GL873537 22721503 67 + 28711273 GGGATAATCCTTGGCCCCACAGCCATTGCATGACTT-GTTCCCCAGCTCTGCTAGAAATCTCTGGGAT i otoGar3.GL873537 C 0 I 201 s canFam3.chr9 21338830 68 + 61074082 AGGGCAACTCCTGACCCCACAGCACATGGTTGCTTTGGTTCCTTGGCTCTAACAAAAATCTCCGGGAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309666 62 - 852752 ------CTTCCTGGCCCCATGGCAGCTGGATGCTTTAGTCTTTCAGCTCTAATGGAAATCTCTAGTGT i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=115078.000000 s hg38.chr17_GL383564v2_alt 6340 10 + 133151 TTGGGATATA s panTro5.chr17 16200217 10 + 83181570 TTGGGATATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107574 10 + 83442489 TTGGGATATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942695 10 + 4267968 TTGGGATATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920960 10 - 2193130 TTGGGATATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995268 10 - 77216781 TTGGGATATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907869 10 - 80997621 TTGGGATATA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851253 10 - 8458610 TGGGGATATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807572 10 + 75148670 TTGGGATATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030745 10 + 4244037 TGGGGATATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057962 10 + 4569836 TTGGGATATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024063 10 - 159171411 TTGGGACATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750384 10 + 3513951 TTGGGATATG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6910903 10 - 7032639 TTGAGATATA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837983 10 - 65901067 TTGGGGTATA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2919672 10 + 8555354 TTGGGGTATA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22721771 10 + 28711273 TTGAGGTTCA i otoGar3.GL873537 I 201 C 0 s canFam3.chr9 21338898 10 + 61074082 GTGAGGTCTA i canFam3.chr9 C 0 I 17 s dasNov3.JH570468 309728 10 - 852752 TTGAAATTTA i dasNov3.JH570468 C 0 I 40 e cebCap1.NW_016107730v1 1799883 0 + 1920343 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=71784.000000 s hg38.chr17_GL383564v2_alt 6350 6 + 133151 CAGTCA s panTro5.chr17 16200227 6 + 83181570 CAGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107584 6 + 83442489 CAGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942705 6 + 4267968 CAGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920970 6 - 2193130 CAGCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995278 6 - 77216781 CAGTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907879 6 - 80997621 CAGTCA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851263 6 - 8458610 CAGTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807582 6 + 75148670 CAGTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030755 6 + 4244037 CAGTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057972 6 + 4569836 CAGTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024073 6 - 159171411 TAGTCa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750394 6 + 3513951 CAGTCa i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6910913 6 - 7032639 CAGTCa i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837993 6 - 65901067 cagtca i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2919682 6 + 8555354 cagtca i proCoq1.NW_012135969v1 C 0 I 461 s otoGar3.GL873537 22721781 6 + 28711273 caatca i otoGar3.GL873537 C 0 C 0 e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e cebCap1.NW_016107730v1 1799883 0 + 1920343 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=3225.000000 s hg38.chr17_GL383564v2_alt 6356 1 + 133151 G s panTro5.chr17 16200233 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107590 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942711 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920976 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995284 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907885 1 - 80997621 G i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851269 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807588 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030761 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057978 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024079 1 - 159171411 c i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750400 1 + 3513951 c i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6910919 1 - 7032639 c i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35837999 1 - 65901067 g i micMur3.chr16 C 0 I 458 s otoGar3.GL873537 22721787 1 + 28711273 g i otoGar3.GL873537 C 0 I 12 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e cebCap1.NW_016107730v1 1799883 0 + 1920343 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=3061045.000000 s hg38.chr17_GL383564v2_alt 6357 365 + 133151 Aatgtttctgtcaacgacagaccacatatacgggcggtggtcccacaagattataatgatgctgaaaattcctattctctagtgatgtggaagtggttataatgtcgtagtgcaatgcattaccttttctatgtttagatacacaaa----tattatcgtgttaataatagttgcctatgatactcagtacagcaacatgctgtacaggtttgtagcc-aggtgctataggctgtgc--tatacagtctaggtgtgtagtaggctctaccatctaggtttgtgtgagttccccctataatgtttccacagtgaagaaatctcttaacgacgcatttctcag---gacgca-ccctgtc-ttaaatgatgcatATGTT---- s panTro5.chr17 16200234 365 + 83181570 Aatgtttctgtcaacgacagaccacatatacgggcggtggtcccacaagattataatgatgctgaaaattcctattctctagtgatgtggaagtggttataatgtcgtagtgcaatgcattaccttttctatgtttagatacacaaa----tattatcgtgttaataatagttgcctatgatactcagtacagcaacatgctgtacaggtttgtagcc-aagtgctataggctgtgc--tatacagtctaggtgtgtagtaggctctaccatctaggtttgtgtgagttcaccctataatgtttccacagtgaagaaatctcttaacgacgcatttctcag---gacgca-ccctgtc-ttaaatgatgcatATGTT---- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107591 365 + 83442489 Aatgtttctgtcaacgacagaccacatatacgggcggtggtcccacaagattataatgatgctgaaaattcctattctctagtgatgtggaagtggttataatgtcgtagtgcaatgcattaccttttctatgtttagatacacaaa----tattatcgtgttaataatagttgcctatgatactcagtacagcaacatgctgtacaggtttgtagcc-aagtgctataggctgtgc--tatacagtctaggtgtgtagtaggctctaccatctaggtttgtgtgagttcaccctataatgtttccacagtgaagaaatctcttaacgacgcatttctcag---gacgca-ccctgtc-ttaaatgatgcatATGTT---- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3942712 365 + 4267968 Aatgtttctgtcaatgacagaccacatatacgggcggtggtcccacaagattataatgatgctgaaaattcctattctctagtgatgtggaagtggttataatgtcgtagtgcaatgcattaccttttctatgtttggatacacaaa----tattatcgtgttaataatagttgcctatgatactcagtacagcaacatgctgtacaggtttgtagcc-aggcgctataggctgtac--tatacagtctaggtgtgtagtaggctctaccatctaggtttgtgtgagttcacactataatgtttccacaatgaagaaatctcttaacgacgcatttctcag---gacgca-ccctgtc-ttaaatgatgcatATGTT---- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1920977 365 - 2193130 Aatgtttctgtcaacgacagaccacatatacgggtggtggtcccacaacattataatgatgctgaaaattcctattctctagtgatgtggaagtggttataatgctgtagtgcagtgtattaccttttctatgtttagatacacaaa----tactatcgtgttaataatagttgcctatgatactcagtacagcaacattctgtactggtttgtagcc-aggcgctataggctgtac--tatacagtctaggtgtgtagtaggctctaccatctaggtttgtgtgagttcaccctataatgtttccacaatgaagaaatctcctaacgatccatttctcag---aacgca-ccctgtc-ttaaatgatgcatATGTT---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995285 365 - 77216781 Aatgtttttgtcaatgacagatcagatatatgggcggtggtcccacgagattataatggtgctgaaaattcctattgtctagtgatgtcgaagttgttataatgttgtagtgcaatgcgttaccttttctatgttcagatacacaaa----tactaccgtgtt----acagttgactgtgatactcagtacagcagcatgctgtacaggcttgtagcc-agacactataggctgtactatatacagtcta-gtgtgtagtaggctctaccatctaggtttgtgtgagttcactctataatgtttccacaatgaagaaatcacctaacaacacatttctcagaaaaacgca-ccctgtc-ttaaatgatgcatATGTT---- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27907886 365 - 80997621 AatgtttttgtcaatgacagatcagatatatgggcggtggtcccacgagattataatggtgctgaaaattcctattgtctagtgatgtcgaagttgttataatgttgtagtgcaatgcgttacCTTTTCtatgttcagatacacaaa----tactaccgtgtt----acagttgactgtgatactcagtacagcagcatgctgtacaggcttgtagcc-agacactataggctgtactatatacagtcta-gtgtgtagtaggctctaccatctaggtttgtgtgagttcactctataatgtttccacaatgaagaaatcacctaacaacacatttctcagaaaaacgca-ccctgtc-ttaaatgatgcatATGTT---- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851270 362 - 8458610 AatgtttttgtcaatgacagatcagatatatgggcggtggtcccatgagattataatggtgctgaaaattcctattgtctagtgatgtcaaagtggttataatgttgtagtgcaatacattacATTTTCtatgttcagatacacaaa----tactaccgtgtt----acagttgactgtgatactcagtacagcaacatgctgtacaggcttgcagcc-agacactataggctgtactgtatacagtcta-gtgtgtagtaggctctaccatctaggtttatgtgagttcactctataatgtttccacaatgaagaaatctcctaacaacacatttctcag---aacgca-ccctgtc-ttaaatgatgcatATGTT---- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807589 365 + 75148670 AatgtttttgtcaatgacagatcagatatatgggcggtggtcccacgagattataatggtgctgaaaattcctattgtctagtgatgtcgaagtggttataatgttgtagtgcaatgcgttacCTTTTCtatgttcagatacacaaa----tactaccgtgtt----acagttgactgtgatactcagtacagcaacatgctgtacaggcttgtagcc-agacactataggctgtactgtatacagtcta-gtgtgtagtaggctctaccatctaggtttgtgtgagttcactctataatgtttccacaatgaagaaatcacctaacaacacatttctcagaaaaacgca-cccagtc-ttaaatgatgcatATGTT---- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2030762 362 + 4244037 Aatgtttttgtcaatgacagatcagatatatgggcggtggtcccacgagattataatggtgctgacgattcctattgtctagtgatgttgaagtggttataatgttgtagtgcaatgcattaccttttctatgttcagatacacaaa----cactactgtgtt----acagttgactgtgatactcagtacagcaacatgctgtacaggcttgcagcc-agacactataggctgtactgtatacagtcta-gtgtgtagtaggctctaccatctaggtttgtgtgagttcactctataatgtttccacaatgaagaaatctcctaacaacacatttctcag---aacgca-ccctgtc-ttaaatgatgcatATGTT---- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2057979 362 + 4569836 Aatgtttttgtcaatgacagaccacatatacgggcggtggtcccacaagattataatggtgctgaaaattcctgttgtctagtgaagtcgaagtggttataaccatgtagtgcaatgcattaccttttctatgtttagatacacaaa----tactactgtgtt----acagttgactgtgatactcagtacagcaacatgctgtacaggtttgtagcc-agacactataggctgtactatatacagtcta-gtgtgtagtaggctctaccatctagatttgtgtgagttcactctataatgtttccacaatgaagaaatctcctaacaacacatttctcag---aatgta-ccctgtt-ttaaatgatgcatATGTT---- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024080 363 - 159171411 aatattctggtcaacaacagaccacatatg-gggtggcggtcccttgagattataatggagctggaaattcctatggcctcgtgatgttgaagcggttacaacattgtagtacaatgcattaTCTTTTCCatgtttagatacacagatatttactattgtgtt----actgttgcctctgatactcagtacagcaacgtgctgtaccggtttgtagcc-aggagcaataggctgtac--catacagcctaggtgtgtagcagactctaccatctaggtttgtgtgagttcattctacaatgtttccatagtgaagaactctcctaatgatgcatttgtcat---aacgca-ctc-gtc-ttacatgatgcatgTGTT---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750401 363 + 3513951 aatattttggtcaacaacagaccacatatg-gggccgtggtcccttgagattataatggagctgaaaattcctattgcatagtgatgttgaagcggttacaacattgtagtgcaatgcgttatctttTCCatgtttagatacacagatatttaccattgtgtt----actgttgcctatgacactcggtacagcaatatgctgtaccggtttgtagcc-aggagcaataggctgtac--catacagcctaggtgtgtaggaaactctaccatctaggtttgtgtgagttcactctacaatgtttccacaatgaggaaatctcctaatgacgcatttctcat---aacaca-cct-gtc-ttaggtgatacatgTGTT---- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1799883 353 + 1920343 -------tggtcaacaacagaccacatatg-gggcggtggtccctt---attataatggagctgaaaattcctattgcctagtgatgttgaagtggttacaacgttgtagtgcaatgcattaTCTTTTCCatgtttagatacatagatatttacttttgtgtt----actgttgcctatgacactcagtacagcaacatgctgtactggtttgtagcc-aggagcaataggctgtac--catacagaataggtgtgcagcaggctctaccatctaggtttgtgtgagttcactctacaatgtttccacaatggagaaatctcctaatgatgcatttctcat---aacgca-cct-gtc-ttacgtgattcatgTGTT---- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6910920 363 - 7032639 aatattttggtcaacaacagaccacatatg-gggcggtggtccctcgagattataatggagctgaaaattcctattgcctggtgatgttgaagcggttacaacgttgtagtgcaatgcattaTCTTTTCCatgtttagatacacagatatttactattgtgtt----actgttgcttatgacactcagtacagcaatgtgccgtaccagtttgtagcc-aggagcaataggctgtac--catacagcctaggtgtgtagcagactctaccatctaggcttgtgtgagttcactctacaatgtttccacaatgaagaaatctcctaatgacgcatttctcat---aacgca-ccc-gtc-ttatgtgatgcatgTGTT---- i aotNan1.NW_018502359v1 C 0 I 2 s otoGar3.GL873537 22721800 364 + 28711273 aatgcttctgttaacaacagaccatgtgca-caatggtggtcccataagataataatagaactgaaaaattc------ctaatgatgtcacagctattataacatcgtaacacaatacattacattttctatgcttagatatacaaatacttaccattgtgtt----acaattgcctacagtattcagtatactaacatgttgtgtaggtttgtaccctagaagcaata-gctacac--cagatatcctaggtgtgtggaaggctacaccctctaggcttatgtgagtatagtctatgatgtttgcacaacaacaaaatcgcctaacaatgcatttctcag---agtgcatccccgtcattaagcaatgcatgactATAGT i otoGar3.GL873537 I 12 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=54143.000000 s hg38.chr17_GL383564v2_alt 6722 8 + 133151 ACAAACTA---------- s panTro5.chr17 16200599 8 + 83181570 ACAAACTA---------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107956 8 + 83442489 ACAAACTA---------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943077 8 + 4267968 ACAAACTA---------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921342 8 - 2193130 ACAAACTA---------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995650 8 - 77216781 ACAAATTA---------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908251 8 - 80997621 ACAAACTA---------- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851632 8 - 8458610 ACAAACTA---------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807954 8 + 75148670 ACAAACTA---------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031124 8 + 4244037 ACAAACTA---------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058341 8 + 4569836 ACAAACTA---------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024443 8 - 159171411 TCAAACTA---------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750764 8 + 3513951 TCAAACTA---------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800236 8 + 1920343 TCAAACTA---------- i cebCap1.NW_016107730v1 C 0 I 7 s otoGar3.GL873537 22722164 18 + 28711273 CCAAACTCTCATCTTTGA i otoGar3.GL873537 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=21655.000000 s hg38.chr17_GL383564v2_alt 6730 3 + 133151 GCG s panTro5.chr17 16200607 3 + 83181570 GCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107964 3 + 83442489 GCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943085 3 + 4267968 GCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921350 3 - 2193130 GTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995658 3 - 77216781 GTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908259 3 - 80997621 GTG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851640 3 - 8458610 GTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807962 3 + 75148670 GTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031132 3 + 4244037 GTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058349 3 + 4569836 GTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024451 3 - 159171411 GTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750772 3 + 3513951 GTG i saiBol1.JH378271 C 0 C 0 s otoGar3.GL873537 22722182 3 + 28711273 GTG i otoGar3.GL873537 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e cebCap1.NW_016107730v1 1800244 7 + 1920343 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=19790.000000 s hg38.chr17_GL383564v2_alt 6733 9 + 133151 TAAC-----ttttt s panTro5.chr17 16200610 9 + 83181570 TAAC-----TAttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107967 9 + 83442489 TAAC-----TAttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943088 9 + 4267968 TAAC-----ttttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921353 10 - 2193130 TAAC----tttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995661 14 - 77216781 TAACtttttttttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908262 10 - 80997621 TAAC----tttttt i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851643 7 - 8458610 TAAC-------ttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807965 7 + 75148670 TAAC-------ttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031135 7 + 4244037 TAAC-------ttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058352 9 + 4569836 TAAC-----ttctt i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22722185 9 + 28711273 TAAT-----TTTCT i otoGar3.GL873537 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e cebCap1.NW_016107730v1 1800244 7 + 1920343 I e saiBol1.JH378271 1750775 0 + 3513951 C e calJac3.chr5 46024454 0 - 159171411 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=1378017.000000 s hg38.chr17_GL383564v2_alt 6742 292 + 133151 ttttcttttttgagacaaagtgtcaatcttgttgctcaggctggagtgc----aatggcgcaatcttggctcacggaaacctccgcctcccg-----------------ggttcaagcaattctcct-cctcagcctcctgagtagctgggattacaggcatgtaccaccatgcccggctaattttatatttttagtagagaccggttttctccatgttgttcatgctggtctcgaactcctgacctcaggtgatccgcctgccttggcctcccaaagtacagggattacaggcgtgagccaccgcgcccggcc s panTro5.chr17 16200619 293 + 83181570 ttttcttttttgagacaaagtgtcactcttgttgctcaggctggagtgc----aatggtgcaatcttggctcacggaaacctccgcctcccg-----------------ggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatatgccaccatgcccagctaattttatatttttagtagagaccgggtttctccatgttgttcatgctggtctcgaactcctgacctcaggtgatccgcctgccttggcctcccaaagtacagggattacaggcgtgagccactgcacccggcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16107976 293 + 83442489 ttttcttttttgagacaaagtgtcactcttgttgctcaggctggagtgc----aatggtgcaatcttggctcacggaaacctccgcctcccg-----------------ggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgtaccaccatgcccagctaattttatatttttagtagagaccgggtttctccatgttgttcatgctggtctcgaactcctgacctcaggtgatccgcctgccttggcctcccaaagtacagggattacaggcgtgagccactgcgcccggcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943097 293 + 4267968 ttttcttttttgagacaaagtgtcactcttgttgctcaggctggagtgc----aatggcgcaatcttggctcacggaaacctccgcctcccg-----------------ggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcatgtaccaccatgcccggctaattttatatttttagtagagactgggtttctccatgttgttcatgctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtacagggattacaggcgtgagccaccgcgcccggcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921363 297 - 2193130 ttttcttttttgagacaaagtttcactattgttgctcaggctggagtgcaatgaatggcacaatcttggctcacagaaacctctgcctcccg-----------------ggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatgtaccaccatgcccggctaattttgtatttttagtagagaccgggtttctccatgttggtcatgctggtctcaaactcctgacctcaggtgatctgcctgccttggcctcccaaagtctagggattacaggcgtgagccaccgcgcctggcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995675 310 - 77216781 tttttttttttgagacaaagtttcactcttgttgctgaggctggagtgc----aatggcacaatcttggctcacagaaacctccgcctcccgcctcccgggttctcccgggttcaagcaattctcctgcttcagcatcctgagtagctgggactataggcatgcaccaccatgcccagctaattttgtattttcagtagagaccaggtttctctatgttggtcaggctagtctcaaactcctgacctcaggtgatccgcccgccttggcctcccaaagtgcagggattacaggcgtgagccaccgtgcccggcc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908272 310 - 80997621 tttttttttttgagacaaagtttcactcttgttgctgaggctggagtgc----aatggcacaatcttggctcacagaaacctccgcctcccgcctcccgggttctcccgggttcaagcaattctcctgcttcagcctcctgagtagctgggactacaggcatgcaccaccatgcccagctaattttgtattttcagtagagaccaggtttctctatgttggtcaggctagtctcaaactcctgacctcaggtgatccgcccgccttggcctcccaaagtgcagggattacaggcgtgagccaccgtgcccggcc i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851650 310 - 8458610 tttttttttttgagacaaagtttcactcttgttgctgaggctggagtgc----aatggcacaatcttggctcacagaaacctccacctcccacctcccgggttctcccgggttcaagcaattctcctgcttcagcctcctgagtagctgggactacaggcatgcaccaccatgcccggctaattttgtattttcagtagagaccaggtttctccatgttggtcaggctagtctcgaactcctgacctcaggtgatccacccgccttggcctcccaaagtgcagggattacaggcgtgagccaccgtgcccagcc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64807972 309 + 75148670 tttttttttttta-agacagtttcactcttgttgctgaggctggagtgc----aatggcacaatcttggctcacagaaacctccgcctcccgcctcccgggttctcccgggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggcatgcaccaccatgcccggctaattttgtattttcagtagagaccaggtttctccaagttggtcaggctagtctcgaactcctgacctcaggtgatccgcccgccttggcctccctaagtgcagggattacaggcgtgagccaccgtgcccggcc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031142 310 + 4244037 tttttttttttgagacaaagtttcactcttgttgctgaggctggagtgc----aatggcacaatcttggctcacagaaacctccgcctcccacctcccgggttctcccgggttcaagcaattctcctgcttcagcctcctgagtagctgggactacaggcatgcaccaccatgcccggctaattttgtattttcagtagagaccaggtttctccatgttggtcaggctagtcttgaactcctgacctcaggtgatccgcccgccttggcctcccaaagtgcagggattacaggcgtgagccaccgtgcccggcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058361 293 + 4569836 tttttttttttgagacaaagtttcactcttgttgctcaggctggagtgc----aatggcacaatcttggctcacggaaacctccacctccca-----------------ggttccagcaattctcctgcctcagcctcctgagtagctgggactacaggcatgcaccactatgcccggctaattttgtattttcagtagagaccaggtttctccatgttggtcaggctagtctcgaactcctgacctcaggtgattcgcccaccttggcctcccaaagtgcagggattacaggcgtgagccaccatgcctggcc i colAng1.NW_012122154v1 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e dasNov3.JH570468 309738 40 - 852752 I e canFam3.chr9 21338908 17 + 61074082 I e otoGar3.GL873537 22722194 0 + 28711273 C e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e cebCap1.NW_016107730v1 1800244 7 + 1920343 I e saiBol1.JH378271 1750775 0 + 3513951 C e calJac3.chr5 46024454 0 - 159171411 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=6006.000000 s hg38.chr17_GL383564v2_alt 7034 1 + 133151 T s panTro5.chr17 16200912 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108269 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943390 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921660 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995985 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908582 1 - 80997621 T i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851960 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808281 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031452 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058654 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s dasNov3.JH570468 309778 1 - 852752 T i dasNov3.JH570468 I 40 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e canFam3.chr9 21338908 17 + 61074082 I e otoGar3.GL873537 22722194 0 + 28711273 C e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e cebCap1.NW_016107730v1 1800244 7 + 1920343 I e saiBol1.JH378271 1750775 0 + 3513951 C e calJac3.chr5 46024454 0 - 159171411 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=4204.000000 s hg38.chr17_GL383564v2_alt 7035 4 + 133151 --AGTT s panTro5.chr17 16200913 4 + 83181570 --AGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108270 4 + 83442489 --AGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943391 4 + 4267968 --AGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921661 4 - 2193130 --AGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995986 4 - 77216781 --CATT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908583 4 - 80997621 --CATT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851961 4 - 8458610 --CATT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808282 4 + 75148670 --CATT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031453 4 + 4244037 --CATT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058655 4 + 4569836 --CATT i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21338925 4 + 61074082 --AGTA i canFam3.chr9 I 17 C 0 s dasNov3.JH570468 309779 4 - 852752 AGCA-- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e otoGar3.GL873537 22722194 0 + 28711273 C e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e cebCap1.NW_016107730v1 1800244 7 + 1920343 I e saiBol1.JH378271 1750775 0 + 3513951 C e calJac3.chr5 46024454 0 - 159171411 C e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=22654.000000 s hg38.chr17_GL383564v2_alt 7039 4 + 133151 TAAC s panTro5.chr17 16200917 4 + 83181570 TAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108274 4 + 83442489 TAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943395 4 + 4267968 TAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921665 4 - 2193130 TAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995990 4 - 77216781 TAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908587 4 - 80997621 TAAT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851965 4 - 8458610 TAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808286 4 + 75148670 TAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031457 4 + 4244037 TAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058659 4 + 4569836 TAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024454 4 - 159171411 TAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750775 4 + 3513951 TAAG i saiBol1.JH378271 C 0 C 0 s canFam3.chr9 21338929 4 + 61074082 TGAC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 309783 4 - 852752 CAGT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e otoGar3.GL873537 22722194 0 + 28711273 C e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e cebCap1.NW_016107730v1 1800244 7 + 1920343 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=39410.000000 s hg38.chr17_GL383564v2_alt 7043 6 + 133151 -TTTTTA s panTro5.chr17 16200921 6 + 83181570 -TTTTTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108278 6 + 83442489 -TTTTTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943399 6 + 4267968 -TTTTTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921669 6 - 2193130 -TTTTTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29995994 6 - 77216781 -TTTTTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908591 6 - 80997621 -TTTTTA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851969 6 - 8458610 -TTTTTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808290 6 + 75148670 -TTTTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031461 6 + 4244037 -TTTTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058663 6 + 4569836 -TTTTAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024458 6 - 159171411 -TTTTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750779 6 + 3513951 -TTTTTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800251 6 + 1920343 -TTTTTA i cebCap1.NW_016107730v1 I 7 C 0 s canFam3.chr9 21338934 5 + 61074082 -TTTCT- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 309787 6 - 852752 CTTTCT- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e otoGar3.GL873537 22722194 0 + 28711273 C e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=11672.000000 s hg38.chr17_GL383564v2_alt 7049 2 + 133151 AA s panTro5.chr17 16200927 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108284 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943405 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921675 2 - 2193130 AT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996000 2 - 77216781 AT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908597 2 - 80997621 AT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851975 2 - 8458610 AT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808296 2 + 75148670 AT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031467 2 + 4244037 AT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058669 2 + 4569836 AT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024464 2 - 159171411 AT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750785 2 + 3513951 AT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800257 2 + 1920343 AT i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22722194 2 + 28711273 AT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338939 2 + 61074082 AT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309793 2 - 852752 GT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e aotNan1.NW_018502359v1 6911283 2 - 7032639 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=466950.000000 s hg38.chr17_GL383564v2_alt 7051 45 + 133151 GTGCA----TTTTCTTGTTGTCACTGCCATAGTATTTAAATCTTTTCCT s panTro5.chr17 16200929 45 + 83181570 GTGCA----TTTTCTTGTCGTCACTGCCATAGTATTTAAATCTTTTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108286 45 + 83442489 GTGCA----TTTTCTTGTCGTCACTGCCATAGTATTTAAATCTTTTCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943407 45 + 4267968 GTGCA----TTTTCTTGTCGTCACTGCCATAGTATTTAAATCTTTTCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921677 45 - 2193130 GTGCA----TTTTCTTGTCCTCACTGCCATAGTACTTAAATCTTTTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996002 44 - 77216781 GTGCA-----TTTCTTGTCCTCACTGCCATAGTATTTAAATCTTTTCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908599 44 - 80997621 GTGCA-----TTTCTTGTCCTCACTGCCATAGTATTTAAATCTTTTCCT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1851977 44 - 8458610 GTGCA-----TTTCTTGTCCTCACTGCCATAGTATTTAAATCTTTTCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808298 44 + 75148670 GTGCA-----TTTCTTGTCCTCACTGCCATAGTATTTAAATCTTTTCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031469 44 + 4244037 GTGCA-----TTTCTTGTCCTCACTGCCATAGTATTTAAATCTTTTCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058671 44 + 4569836 GTGCA-----TTTCTTGTCCTCACTGCCATAGTATTTAAATCTTTTCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024466 45 - 159171411 GTGCA----TTTTCTTGTCCTCACTGCCATAGCATTTAAATCTTTTCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750787 45 + 3513951 GTGCA----TTTTCTTGTCCTGACTGCCATAGTATTTAAATCTTTTCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800259 45 + 1920343 GTGCA----TCTTCTTGTCCTGACTGCCATAGTATTTAAATCTTTTCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911285 45 - 7032639 GTGCA----TTCTCTTGTCCTCACTGCCAAAGCATGTAAATCTTTTCCT i aotNan1.NW_018502359v1 I 2 C 0 s otoGar3.GL873537 22722196 45 + 28711273 GTGTA----CTTCTTTGTCCTTACTGCCCCAATATTCAAATATCTGTCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338941 48 + 61074082 GTGCAATTTTTTTTTTGTCCTCTCTGTTCC-GTGTCTAAACATCTTCTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309795 45 - 852752 GTGCA----TTTTATTGCCCTCACTGCCTCAGTTTCCAAGAATCTTCCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2919688 461 + 8555354 I e micMur3.chr16 35838000 458 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=430989.000000 s hg38.chr17_GL383564v2_alt 7096 28 + 133151 TTGCTGGAACACAAAGACCTTCAGTAAT s panTro5.chr17 16200974 28 + 83181570 TTGCTGGAACACAAAGACCTTCAGTAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108331 28 + 83442489 TTGCTGGAACACAAAGACCTTCAGTAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943452 28 + 4267968 TTGCTGGAACACAAAGACCTTCAGTAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921722 28 - 2193130 TTGCTGGAACACAAAGACCTTCAGTAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996046 27 - 77216781 TTGCTGGAACACAAAGACCTTCAGTAA- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908643 28 - 80997621 TTGCTGGAACACAAAGACCTTCAGTAAT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852021 28 - 8458610 TTGCTGGAACATAAAGACCTTCAGTAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808342 28 + 75148670 TTGCTGGAACACAAAGACCTTCAGTAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031513 28 + 4244037 TTGCTGGAACACAAAGACCTTCAGTAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058715 28 + 4569836 TTGCTGGAACACAAAGACCTTCAGTAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024511 28 - 159171411 TTGCTGGAACACAAAGACCTTCAGTAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750832 28 + 3513951 TTGCTGGAACACAAAGACCTTCAGTAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800304 28 + 1920343 TTGCTGGAACACAAAGACGTTCAGTAAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911330 28 - 7032639 TTGCTGGAACACAAAGACCTTCAGTAAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35838458 28 - 65901067 TTGCTAGAACACAAGGACCTTCAGTAAT i micMur3.chr16 I 458 C 0 s proCoq1.NW_012135969v1 2920149 28 + 8555354 TTGCTGGCACACAAGGACCTTCAGTAAT i proCoq1.NW_012135969v1 I 461 C 0 s otoGar3.GL873537 22722241 28 + 28711273 TTGCTGGAACACAGAGTTCTTCAGTCAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21338989 28 + 61074082 TTGCTAGAATGCAAAGACCTTCAGATAT i canFam3.chr9 C 0 I 198 s dasNov3.JH570468 309840 28 - 852752 TTTCTGGAATACAAGAAACCTCAGTAAT i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=36765.000000 s hg38.chr17_GL383564v2_alt 7124 3 + 133151 TTT- s panTro5.chr17 16201002 3 + 83181570 TTT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108359 3 + 83442489 TTT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943480 3 + 4267968 TTT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921750 3 - 2193130 TTT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27908671 3 - 80997621 TTT- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852049 3 - 8458610 TTT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808370 3 + 75148670 TTT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031541 3 + 4244037 TTT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058743 3 + 4569836 TTT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024539 3 - 159171411 TTT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750860 3 + 3513951 TTT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800332 3 + 1920343 TTT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911358 3 - 7032639 TTT- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35838486 3 - 65901067 TTT- i micMur3.chr16 C 0 I 584 s proCoq1.NW_012135969v1 2920177 3 + 8555354 TTT- i proCoq1.NW_012135969v1 C 0 I 587 s otoGar3.GL873537 22722269 3 + 28711273 TTT- i otoGar3.GL873537 C 0 I 4 s canFam3.chr9 21339215 3 + 61074082 TTT- i canFam3.chr9 I 198 C 0 s dasNov3.JH570468 309868 3 - 852752 -TTA i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M e rheMac8.chr16 29996073 0 - 77216781 C a score=799784.000000 s hg38.chr17_GL383564v2_alt 7127 93 + 133151 CTTTTCACCA--CAATTTCTCATCCAGTAACTAAGCCCCTTCTTGCCCTCTCCTTAGGCCCAGCACTGACG--GGGCAATGACA-CC-G-TTGTTCTCAC s panTro5.chr17 16201005 93 + 83181570 CTTTTCACCA--CAATTTCTCATCCAGTAACTAAGCCCCTTCTTGCCCTCTCCTTAGGCCTAGCACTGACG--GGGCAATGACA-CC-A-TTGTTCTCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108362 93 + 83442489 CTTTTCACCA--CAATTTCTCATCCAGTAACTAAGCCCCTTCTTGCCCTCTCCTTAGGCCTAGCACTGACG--GGGCAATGACA-CC-A-TTGTTCTCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943483 92 + 4267968 CTTTTCACCA--CAATTTCTCATCCAGTAACTAAGCCCCTTCTTGCCCTCTCCTTAGGCCCAGCACTGAC---GGGCAATGACA-CC-G-TTGTTCCCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921753 93 - 2193130 CTTTTCACCA--CACTTTCTTGTCCAGTAACTAAGCCCCTTCTTGCCCTCCCCTTAGGCCCAGCACTGGCG--GGGCAATGACA-GA-G-TTGTTCTCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996073 91 - 77216781 -TTTTCACCA--CAATTTCTCGCCCAGTAACTAAGCCTCTTCTTTCCCTCCCCTTAGGCCTAGCACTGATG--GGTCAATGACA-C--G-TTGTTCTCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908674 92 - 80997621 CTTTTCACCA--CAATTTCTCGCCCAGTAACTAAGCCTCTTCTTTCCCTCCCCTTAGGCCTAGCACTGATG--GGGCAATGACA-C--G-TTGTTCTCAC i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852052 93 - 8458610 CTTTTCACCA--CAATTTCTCGCCCAGTAACTAAGCCTCTTCTCTCCCTCCCCTTAGGCCCAGCACTGACG--GGGCAATGACA-CT-G-TTGTTCTCAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808373 92 + 75148670 CTTTTCACCA--CAATTTCTCGCCCAGTAACTAAGCCTCTTTTTTCCCTCCCCTTAGGCCTAGCACTGACG--GGGCAATGACA-C--G-TTGTTCTCAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031544 93 + 4244037 CTTTTCACCA--CAATTTGTCGCCCAGTAACTAAGCCTCTTTTTTCCCTCCCCTTAGACCCAGCACTGACG--GAGCAATGACACC--G-TTGTTCTCAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058746 93 + 4569836 CTTTTCACCA--CCACTTCTCGCCCAGTAACTAAGCCTCTTCTTTCCCTTCCCTTAGGCCCAGCACTGACG--GGGCAATGATA-CA-G-TTGTTCTCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024542 93 - 159171411 CTTTTCACCT--CAATTTCTTGTCCAATAACTAAGTCTCTTCTTTCCCTCCCCTTCTGCCCAGCAGGGACA--GGGTGATAACT-CA-G-TTGTTCTCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750863 92 + 3513951 CTTTTCACTT--CAATTTCTTGTCCAATAACTAAGCCTCTTCTTGCCCTCCCCTTCGGCCCAGCATGGACA--GGGTGATAGCA-CA-A-TTGTTC-CAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800335 93 + 1920343 CTTTTCGCCT--CAATTTCTTGTCCAATAACTAAGCCTCTTCTTGCTCTCCCCTTCAGGCCAGCATGGATG--GGGTGATAACA-CA-A-TTGTTCTCGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911361 93 - 7032639 CTTTTCACCT--CAATTTCTTGTCCAATAACTAAGCCTCTTCTTGCCCTCCCCTTCGACCCAGCATGGACG--GGGTGATAACA-CA-G-TTGTTCTCAC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22722276 80 + 28711273 CTTTTCATTT--CAATTTCTTGTCCAATAACTAAACCC---TTTGCCCTCGCTTCAGGCCCAG-------------TGACAACA-TA-GCCTATTCTCAT i otoGar3.GL873537 I 4 I 257 s canFam3.chr9 21339218 83 + 61074082 CTTTTCACT---CAGCTTCTTG-CCAACAACTAAGTCTCCTGTAACAA-------AGCAACAGCACAGGCA--GGCAGCACACA-G--G-TTGTTCTAAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309871 95 - 852752 TTTTTTGCCATTCAATTTCTTGTCCATTTACTAAGACT---TTTGCACCATCCTCAGGCCTAACAACAACATTGGGCAATGGCA-CAGG-TTGTTCTCAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2920180 587 + 8555354 I e micMur3.chr16 35838489 584 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=2051172.000000 s hg38.chr17_GL383564v2_alt 7220 218 + 133151 CGggggccatgatgaagtgaaaaga----gaatgggcctagcagacatgagactgaatcgagcctttgccagttcactaa--ctgtcaatcagaaaatgtgcaaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcataggtggtaagggttagataggaaagaacacagtagaatgcctagcacacc-taagtactcaatc s panTro5.chr17 16201098 218 + 83181570 CGggggccatgatgaagtgaaaaga----gaatgggcctagcagacatgagactgaatcgagcctttgccagttcactaa--ctgtcaatcagaaaatgtacaaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcataagtggtaagggttagataggaaagaacacagtagaatgcctagcacacc-taagtactcaatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108455 218 + 83442489 CGggggccatgatgaagtgaaaaga----gaatgggcctagcagacatgagactgaatcgagcctttgccagttcactaa--ctgtcaatcagaaaatgtacaaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcataggtggtaagggttagataggaaagaacacagtagaatgcctagcacacc-taagtactcaatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943575 214 + 4267968 TGggggccatgatgaagtgaaaaga----gaatgggcctagcagacatgagactgaatcgagcctttgccagttc----a--ctgtcaatcagaaaatgtacaaatgtacttctctctagttttctcatctgtacattgaggcaatga--gtaaccacctcataggtggtaagggttagataggaaagaacacagtagaatgcctagcacacc-taagtactcaatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1921846 217 - 2193130 Agggcgccatggtgaagtgaaaaga----gaaggggcctagcagacatgaggctgaatcgagcctttgccggttcactaa--ctgtcaatc-gaaaatgtacaaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcataggtggtaagggttagataggaaagaacacagtagaatgcctagcacacc-taagtactcaatc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996164 210 - 77216781 ggggggccatggtgaagtgaaaaga----gaatgagcctagcagacatgaggctgaatcgagcctttgacggttcactaa--ctgtcaatcaga--------aaatgcacttcactctagttttctcgtctgtgcatggaggcaatgg--gtaaccacctcataggtggtaagggttagataggaaaggacacagtagaaggcctagcacacc-catgcactcaatc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908766 210 - 80997621 ggggggccatggtgaagtgaaaaga----caatgagcctagcagacatgaggctgaatcgagcctttgacggttcactaa--ctgtcaatcaga--------aaatgcacttcactctagttttctcgtctgtgcatggaggcaatga--gtaaccacctcataggtggtaagggttagataggaaaggacacagtagaaggcctagcacacc-catgcactcaatc i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852145 210 - 8458610 ggggggccatggtgaagtgaaaaga----gaatgagcctagcagacatgaggctgaatcgagcctttgacggttcactaa--ctgtcaatcaga--------aaatgtacttcactctagttttctcgtctgtgcatggaggcaatga--gtaaccacctcataggtggtaagggttagatgggaaaggacacagtagaaggcctagcacacc-catgcactcaatc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808465 210 + 75148670 gaggggccatggtgaagtgaaaaga----gaatgagcctagcagacatgaggctgaatcgagcctttgacggttcactaa--ctgtcaatcaga--------aaatgcacttcactctagttttctcgtctgtgcttggaggcaatga--gtaaccacctcataggtggtaagggttagataggaaaggacacagtagaaggcctagcacacc-catgtactcaatc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031637 203 + 4244037 GGGGGTCcatggcgaagtgaaaaga----gaatgagcctagcagacatgaggctgaatcgagcctttgatggttcactaa--ctgtcaatcaga--------aaatgtacttcactctagttttctcgtctgtgcatggaggcaatgatggtaa---------gggtggtaagggttagataggaaaggacacagtagaaggcctagcacacc-catgcactcaatc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2058839 210 + 4569836 AGggggccatggtgaagtgaaaaga----gaatgagcctagcagacatgaggctgaatcgagcctttgacagttcactaa--ctgccaatcaga--------aagtgtacttcactctagttttctcgtctgtgcatggaggcaatga--gtaaccacctcataggtggtaagggttagatagggaaggacacagtagaatgcctagcacacc-catgtactcaatc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024635 212 - 159171411 TGTGGGTcatggtgaagtgaagaga----gaatgggcccagcagacgtggggctgaatcgagcctttgccagttcactaactctgtcaaccaga--------aaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcaggggtggtaagggttagataggaacgaacactgtagagtgcccagcacacc-tacgtactcaatc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1750955 212 + 3513951 TGCCGGTcatggtgaagtgaagaga----gaatgggtgcagcagatgtgaggctgaatcgagccttcgccagttcactaactctgtcaaccaga--------aaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcatgagtggtaagggttagataggaaggaacctggtagagtgcccagcacaac-tacgtactcaatc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800428 212 + 1920343 TGCCGGTcatggtgaagtgaggaga----gaatgggcccagcagatgtgaggctgaatcgggcctttgccagttcactaactctgtcaaccaga--------aaatgtacttcactctagttttctcatctgtacattgaggcaatga--gtaaccacctcatgggtggtaaggtttagatgggaaggaacatggtagagtgcccagcacacc-tacgtgagtaatc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911454 212 - 7032639 TGCgggccatggtgaagtgaagaga----gaatgggcccagcagacgtgaggctgaatcgagcctttgccagttcactaactctgtcaaccaga--------aaatgtacttcactctagttttctcatctgcacattgaggcaatga--gtaaccacctcatgggtggtaagggttagataggaaggaacacgatagagtgcccagcacacc-tacatactcaatc i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22722613 200 + 28711273 cagagagagtgagagagagaggaga----gaatgggttctgcagacatgagatagaatcaagcctttgcca-ttcattaattctgtcaatgaga--------aaacgta-----ctctagtctcttcatctgcacagtgaga----ac--ataattacttcacaggtggtaaggattaaacaggacaggacataataggatacccagcacacc-catgtactcaa-- i otoGar3.GL873537 I 257 C 0 s canFam3.chr9 21339301 209 + 61074082 TGggggtcatggcggtgtggcaagaaaatgaatggactctatagacatgagactgaatcaagctcttgccaatttattcc-tctgtgaatcaga--------aaatggactt-----tagtttcttcatttgcatgcccaggatatgt--ctagctgcctccca-gtagtaaggattaagtaggaaagaatactatacaatagctgttacaccttacatcctcata- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 309966 200 - 852752 TGGGGATCAtgg--------aaaga----gaatgttctcagtagacaggagactgaatcaagtcttta-cagttcatcaactctgtgaactaga--------aaacaaaccttattctaatttcctcacctgcacatcgaggctaaga--ataattttatcacaagtggtaagatttaaata-aaaagaatgtagcagagtatcta-cctact-cac-tactcaata i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2920180 587 + 8555354 I e micMur3.chr16 35838489 584 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=43622.000000 s hg38.chr17_GL383564v2_alt 7438 4 + 133151 aatg s panTro5.chr17 16201316 4 + 83181570 aatg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108673 4 + 83442489 aatg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943789 4 + 4267968 aatg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922063 4 - 2193130 aatg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996374 4 - 77216781 agtg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908976 4 - 80997621 agtg i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852355 4 - 8458610 agtg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808675 4 + 75148670 aatg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031840 4 + 4244037 agtg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059049 4 + 4569836 aaca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024847 4 - 159171411 aatg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751167 4 + 3513951 aatg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800640 4 + 1920343 agtg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911666 4 - 7032639 agtg i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2920767 4 + 8555354 AATA i proCoq1.NW_012135969v1 I 587 C 0 s otoGar3.GL873537 22722813 3 + 28711273 -acg i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339510 4 + 61074082 aatg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310166 4 - 852752 aatg i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35838489 584 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=68569.000000 s hg38.chr17_GL383564v2_alt 7442 5 + 133151 ttagt-- s panTro5.chr17 16201320 5 + 83181570 ttagt-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108677 5 + 83442489 ttagt-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943793 5 + 4267968 ttagt-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922067 5 - 2193130 ttagt-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996378 5 - 77216781 ttagt-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908980 5 - 80997621 ttagt-- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852359 5 - 8458610 ttagt-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808679 5 + 75148670 ttagt-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031844 5 + 4244037 ttagt-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059053 5 + 4569836 ttagt-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024851 5 - 159171411 ttagt-- i calJac3.chr5 C 0 I 132 s saiBol1.JH378271 1751171 5 + 3513951 ttagt-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800644 5 + 1920343 ttagt-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911670 5 - 7032639 ttagt-- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839073 5 - 65901067 ttagt-- i micMur3.chr16 I 584 C 0 s proCoq1.NW_012135969v1 2920771 5 + 8555354 TTAGT-- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22722816 5 + 28711273 ttagt-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339514 5 + 61074082 ttggt-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310170 5 - 852752 --TGTCT i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=734941.000000 s hg38.chr17_GL383564v2_alt 7447 55 + 133151 tctGGACCTTTCATTTGAATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG s panTro5.chr17 16201325 55 + 83181570 tctggacctttcatttgaATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108682 55 + 83442489 tctggacctttcatttgaATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943798 55 + 4267968 tctggacctttcatttgaATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922072 55 - 2193130 tctGGAACTTTCGTTTGAATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCCG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996383 55 - 77216781 tctGGACCTTTCGTTTGAATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27908985 55 - 80997621 tctGGACCTTTCGTTTGAATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852364 55 - 8458610 tctGGACCTTTCGTTTGAATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808684 55 + 75148670 tctGGACCTTTCGTTTGAATACTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031849 55 + 4244037 tctGGACCTTTCGTTTGAATAGTGCTTGAGCTCTGTGCCCAATCTCCCTTTCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059058 55 + 4569836 tctGGACCTTTTGTTTGAATACCACTTGAGCTCTGCGCCCAATCTCCCTTTCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46024988 55 - 159171411 tctGGACCTTTTGTTTGAATCCTGCTTGAGCTCTGCGCCCCATCTCCCTTTCTTG i calJac3.chr5 I 132 C 0 s saiBol1.JH378271 1751176 55 + 3513951 tctGGACCTTTCGTTTGAATCCTGCTTGAGCTCTGTGCCCAGTCTCCCTTTCTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800649 55 + 1920343 tCTGGACCTTTCTTTTGAATCCTGCTTGAGCTCTGTGCCCCATCTTCCTTTCTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911675 54 - 7032639 tctGGACCTTCCGTTTGAATCCTGCTTGAGCTCTGTG-CCAATCTCCCTTTCTTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839078 55 - 65901067 tctcaaCCTTTCATTTCAATACTGCTTGAGCTGTATGCCCAATTTTCCTTTCCTG i micMur3.chr16 C 0 I 360 s proCoq1.NW_012135969v1 2920776 55 + 8555354 CCTCGACCTTTCATTTGAATATTGCTTGAGCTCTGTGCCCAATTTTCCTTTCCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22722821 55 + 28711273 tcttTACCTTTAATCTGAATGTGGCTTGAGCCCTGTGCCCAACTTCCCTCCCCTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339519 54 + 61074082 tctTGAAGTTTTCTTTAAATATCCCTTGAACTCTGGTCCCAGTTCCTTTTTCTA- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310175 54 - 852752 ACTTGAACTTTTGTTTAAATATCCCTTAAGCTCTGTGTTCAATTTCCCTTTTTG- i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=151697.000000 s hg38.chr17_GL383564v2_alt 7502 11 + 133151 GATCAAATAAG s panTro5.chr17 16201380 11 + 83181570 GATCCAATAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108737 11 + 83442489 GATCCAATAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943853 11 + 4267968 GATCAAATAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922127 11 - 2193130 GATCAAATAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996438 11 - 77216781 GATCAAATAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909040 11 - 80997621 GATCAAATAAG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852419 11 - 8458610 GATCAAATAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808739 11 + 75148670 GATCAAATAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031904 11 + 4244037 GACCAAATAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059113 11 + 4569836 GATCAAATAAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025043 11 - 159171411 GATCAAATAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751231 11 + 3513951 GATCAAATAAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800704 11 + 1920343 GATCAAATAAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911729 11 - 7032639 GATCAAATAAG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2920831 11 + 8555354 GATCAAACAAG i proCoq1.NW_012135969v1 C 0 I 82 s otoGar3.GL873537 22722876 11 + 28711273 GATCAAGTAAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339573 11 + 61074082 GATCAAATAAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310229 11 - 852752 AATCAAAAAAG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35839133 360 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=137421.000000 s hg38.chr17_GL383564v2_alt 7513 19 + 133151 ATTTTTC-----TTTGTTAGTGA-T s panTro5.chr17 16201391 19 + 83181570 ATTTTTC-----TTTGTTAGTGG-T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108748 19 + 83442489 ATTTTTC-----TTTGTTAGTGG-T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943864 19 + 4267968 ATTTTTC-----TTTGTTAGTGG-T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922138 19 - 2193130 ATTTTTC-----TTTGTTAGTAG-T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996449 23 - 77216781 ATTTTTC-TTTGTTTGTTAGTAG-T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909051 23 - 80997621 ATTTTTC-TTTGTTTGTTAGTAG-T i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852430 23 - 8458610 ATTTTTC-TTTCTTTGTTAGTAG-T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808750 23 + 75148670 ATTTTTC-TTTGTTTGTTAGTAG-T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031915 23 + 4244037 ATTTTTC-TTTCTTTGTTAGTAG-T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059124 23 + 4569836 ATTTTTC-TTTGTTTGTTAGTAG-T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025054 18 - 159171411 GTTTTTC-----TTTGTTACTAG-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751242 18 + 3513951 GTTTTTC-----TTTGTTAGTAG-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800715 18 + 1920343 GTTTTTC-----TTTGTTACCAA-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911740 19 - 7032639 GTTTTTC-----TTTGTTAGTAAA- i aotNan1.NW_018502359v1 C 0 I 24 s otoGar3.GL873537 22722887 19 + 28711273 GATTTGG-----TTTGTTAGCAG-C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339584 24 + 61074082 GTTTTTTGTTTGTTTGTCAGTAG-C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310240 21 - 852752 GTTCTTT---TGTTTGTTAGTAG-T i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2920842 82 + 8555354 I e micMur3.chr16 35839133 360 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=131909.000000 s hg38.chr17_GL383564v2_alt 7532 13 + 133151 TTCTTTCTAGATA s panTro5.chr17 16201410 13 + 83181570 TTCTTTCTAGATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108767 13 + 83442489 TTCTTTCTAGATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943883 13 + 4267968 TTCTTTCTAGATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922157 13 - 2193130 TTCTTTCTAGATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996472 13 - 77216781 TTCTTTCTAGATT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909074 13 - 80997621 TTCTTTCTAGATT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852453 13 - 8458610 TTCTTTCTAGATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808773 13 + 75148670 TTCTTTCTAGATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031938 13 + 4244037 TTCTTTCTAGATT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059147 13 + 4569836 TTCTTTCTAGATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025072 10 - 159171411 ---TTTCTAGATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751260 10 + 3513951 ---TTTCTAGATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800733 10 + 1920343 ---TTTCTAGATA i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22722906 13 + 28711273 TTCTCTCTAAATA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339608 13 + 61074082 TTCTCTCTAGATA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310261 13 - 852752 TTCTCTCTAGATA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2920842 82 + 8555354 I e micMur3.chr16 35839133 360 - 65901067 I e aotNan1.NW_018502359v1 6911759 24 - 7032639 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=263721.000000 s hg38.chr17_GL383564v2_alt 7545 27 + 133151 CTTCCTTGGCCAGAACTATAGATCCTC s panTro5.chr17 16201423 27 + 83181570 CTTCCTTGGCCAGAACTATAGATCCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108780 27 + 83442489 CTTCCTTGGCCAGAACTATAGATCCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943896 27 + 4267968 CTTCCTTGGCCAGAACTATAGATCCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922170 27 - 2193130 CTTCCTTGGCCAGAACTATAGATCCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996485 27 - 77216781 CATCCTTGGCCAGAAGTATAGATCCCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909087 27 - 80997621 CATCCTTGGCCAGAAGTATAGATCCCC i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852466 27 - 8458610 CGTCCTTGGCCAGAAGTACAGATCCCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808786 27 + 75148670 CTTCCTTGGCCAGAAGTATAGATCCCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031951 27 + 4244037 CATCCTTGGCCAGAACTATAGATCCCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059160 27 + 4569836 CTTCCTTGGCCAGAAGTGTAGATCCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025082 27 - 159171411 TTCCCTTGGCCAGTACTATAGACACCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751270 27 + 3513951 TTCCCTTGGCCAGAACTATAGATCCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800743 27 + 1920343 TTCCCTTGGCCAGAACTATATATCCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911783 27 - 7032639 TTCCCTTGGCCAGAACCATAGATCCCC i aotNan1.NW_018502359v1 I 24 C 0 s otoGar3.GL873537 22722919 23 + 28711273 CTTCCCGTGTCAGGACTATAGTC---- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339621 27 + 61074082 CATCCTTGGTCAGGACCATGGATCCTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310274 27 - 852752 ATTCCTTGGTTGGGACCATGGGTTCCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2920842 82 + 8555354 I e micMur3.chr16 35839133 360 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=2062213.000000 s hg38.chr17_GL383564v2_alt 7572 178 + 133151 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACATCCAGAGATTTCAGAGGCATTGTTTACTCCTGATGAACAGGGAACATTGCGTGTCCAGGAACCAGCACACTGCCTGAGTTATGGGGGATATTCAGGAAGCATGCtgaac---caatgaatgaatga s panTro5.chr17 16201450 178 + 83181570 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGAGGCATTGTTTACTCCTGATGAACAGGGAACATTGCGTGTCCAGGAACCAGCACACTGCCTGAGTTATGGGGGATATTCAGAAAGCATGCtgaac---caataaatgaatga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108807 178 + 83442489 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGAGGCATTGTTTACTCCTGATGAACAGGGAACATTGCGTGTCCAGGAACCAGCACACTGCCTGAGTTATGGGGGATATTCAGAAAGCATGCtgaac---caataaatgaatga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3943923 178 + 4267968 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGAGGCATTGTTTACTCCTGATGAACAGGGAACATTGCGTGTCCAGGAACCAGCACACTGCCTGAGTTATGGGGGATATTCAGGAAGCATGCtgaac---caatgaatgaatga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922197 178 - 2193130 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGAGGCATTGTTTACTCCTGATGAACAGGAAACATTGCCTGTCCGGGAACCAGCACACTGCCTGAGTTACGGGGGATATTCAGGAAACACGCtgaac---caatgaatgaatga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996512 178 - 77216781 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAATTTTGTGTAGAACACCCAGACATTTCAGTGGCATTGTTTACTCCTGATGAACAGGGGAcactgcgtgtccagcaaccagaacactgcctgagttatgggggatattcaggaaacatgctgaac---agatgaatGAATGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909114 178 - 80997621 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAATTTTGTGTAGAACACCCAGACATTTCAGTGGCATTGTTTACTCCTGATGAACAGGGGAcactgcgtgtccagcaaccagaacactgcctgagttatgggggatattcaggaaacatgctgaac---agatgaatGAATGA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852493 178 - 8458610 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGACATTTCAGTGGCATTGTTTACTCCTGATGAACACGGAAcactgcgtgtccagcaaccagaacactgcctgcgttatgggggatattcaggaaacatgctgaac---cgatgaatgaatGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808813 178 + 75148670 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACGCAGACATTTCAGTGGCATTGTTTACTCCTGATGAACAGGGAACgctgcgtgtccagcaaccagaacactgcctgagttatgggggatagtcaggaaacatgctgaac---caatgaatGAATGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2031978 178 + 4244037 TGTCTTTCACTAACTCTTGTTGATCTATGGTTCTCATTCAATTTTGTGTAGAACACCCAGACATTTCAGTGGCATTGTTTACTCCTGATGAACAGGGGACACTTCGTGTCCAGCAACCAGAACACTGCCTGAGTTATGGGGGATATTCAGGAAACATGCTGAAC---CGatgaatgaatga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059187 178 + 4569836 TGTCTTTCACTAACACTTGTTGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGACATTTCAGTGGCATCGTTTACTCCTGATGAACAGGGAACTctgcatgtccagcaaccagaacactgcctgagttatgggggatattcaggaaacatgctgaag---cgatgaatgaatGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025109 173 - 159171411 TGTCTTTTACAAACTCTCAGTGACCCATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGTGGCATTGTTTTCTCCTGAAGAACAGGGAGCACTGTGTGTCCAGGAACCAGTACCCGGCCTGCGTTAT-GGGGATATTCAGGAAATATGCTGAAC---Caa----tgaatga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751297 178 + 3513951 CGTCTTTCACTAACTCTCAATGATCTATGGTTCCCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGTGGCATTGTTTTCTCCTGAAGAACAGGGAGCACTGTGTGTCCAGGAACCAGTACCTGGCCTGAGTTATGGGGGATATTCAGGAAACATGCTGAAC---Caatgagtgagtga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800770 178 + 1920343 TGTCTTTCACTAACTCTCAATGATCTATGGTTCTCATTCAAGTTTATGTAGAACACCCAGAGATTTCAGTGGCATTGTTTTCTCCTGAAGAACAGGGAGCATTGTGTGTCCAGGTACCAGTACCCGGCCTGAGTTATGGGGGATATTAAGGAAACATGCTGAAC---Caatgaatgaatga i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911810 163 - 7032639 TGTCT------AACTCTCAATGATCTATGGTTCTCATTCAAGTTTGTGTAGAACACCCAGAGATTTCAGTGACATTGTTTTCTCCTGAAGAACAGGGAGCACTGTGTGTCCAGGAACCACTACCCGGCCTGCGTTAT-GGGGATATTCAGGAAATATGCtgaac---caa--------tga i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2920924 178 + 8555354 TGTCTTCCACGAACCCTCGCTGATCTATGGTTCTCATTCAAGTCAGTGTAAAACACCCCAAGATTTCTTTGGCACTGTTTCCTCCTGAAGAACAGCAAACATTTCATGTCCAGGAACCCATACACTGTTTGAGTTATGGGGGGTGTTCAGGAGACACGCAGAAC---CAATAAATGAATGA i proCoq1.NW_012135969v1 I 82 I 84 s otoGar3.GL873537 22722942 169 + 28711273 TATCTTTCACTAACACTCACTGATCTATGGTTCTTATCTGGGTTGGGATAACACACCCCA--GTTCCTGGGGCACTGCTTTTGCCTGAAGGACAACAAACATTTCATGTCCAGGAACCAGTGTGCTGCCTGAGTTATGGGGGATATTGAGGAACCGTG----------AATGAATGATGGA i otoGar3.GL873537 C 0 I 4 s canFam3.chr9 21339648 174 + 61074082 --TCTTTCACCAACTCTT--TAGTCTATGGCTCTCATTCAATTTTGTTTAAGACTTCCTGAGATTTCTGGGGTACTGTTTTCTCCTGATGAACAGGGGCCATTGCATATTCAAGAACCAGCACACTCCTTGAGTTCTAGGGAATGTTCTGGAAACATGCTGAAC---AGGTGAATGATTGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310301 172 - 852752 TGTCTTTCACCAACTCTC--------ATGGATCTCACTTAGGTCTATGTA-AACACCCACGGCTTTCTGTGATACTGTTTTCTCCTGAAGAACAGAGACCATTGCATGCCCAGGAACCAGCACATTACTTGAATTATGGTGGATACTCAGGAAACAGGTtgaatgaataatgaatgaatga i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35839133 360 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=1032367.000000 s hg38.chr17_GL383564v2_alt 7750 99 + 133151 acaaatgaatg--------aatAGCTGATTCTGACTAGTCAACCAAAACTT-AATTAGCGCCATTGCTTCCAGATG----------TTATTGCTTCTC-AAGG-----GAGTATGCAATGTGAA s panTro5.chr17 16201628 99 + 83181570 acaaatgaatg--------aatAGCTGATTCTGACTAGTCAACCAAAACTT-AATTAGTGCCATTGCTTCCGGATG----------TTATTGCTTCTC-AAGG-----GAGTATGCAATGTGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16108985 99 + 83442489 acaaatgaatg--------aatAGCTGATTCTGACTAATCAACCAAAACTT-AATTAGTGCCATTGCTTCCGGATG----------TTATTGCTTCTC-AAGG-----GAGTATGCAATGTGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944101 99 + 4267968 acaaatgaatg--------aatAGCTGATTCTGACTAGTCAACCAAAACTT-AATTAGCGCCATTGCTTCCGGATG----------TTATTGCTTCTC-AAGG-----GAGTATGCAATGCGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922375 101 - 2193130 acaaatgaatg--------aatagatgaTTCTGACTAGTCAACCAAAACTT-AATTAGCGCCAGTGCTTCTGGATG--------TTTTATTGCTTCTC-AAGG-----GAGTATGCAATGTGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996690 101 - 77216781 GCAAATGAATG--------AATAGCTGATTCTGACTAGTCAACCAAGACTT-AGTTAGCACCAATGCTTCTGGATG--------TTTTATTGCTTCTC-AGGG-----GAGTATGCAATGTGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909292 101 - 80997621 GCAAATGAATG--------AATAGCTGATTCTGACTAGTCAACCAAGACTT-AGTTAGCACCAATGCTTCTGGATG--------TTTTATTGCTTCTC-AGGG-----GAGTATGCAATGTGAA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852671 97 - 8458610 GCAAATGAATG--------AATAGCTGATTCTGACTAGTCAACCAAGAC-----TTAGCACCAATGCTTCTGGATG--------TTTTATTGCTTCTC-AGGG-----GAGTATGCAATGTGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64808991 101 + 75148670 GCAAATGAATG--------AATAGCTGATTCTGACTAGTCAACCAAGACTT-AGTTAGCACCAATGCTTCTGGATG--------TTTTATTGCTTCTC-AGGG-----GAGTATGCAATGTGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032156 101 + 4244037 gcaaatgaatg--------aatAGCTGATTCTGACTAGTCAACCAAGACTT-AGTTAGCACCAATGCTTCTGGATG--------TTTTATTGCTTCTC-AGGG-----GAGTATGCAATGTGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059365 101 + 4569836 GCAAATGAATG--------AATAGCTGATTCTGACTAGTCAACCAAGACTT-AGTTAGCACCAATGCTTCTGGATG--------TTTTATTGCTTCTC-AGGG-----GAGTATGCAGTGTGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025282 101 - 159171411 atgaatgaatg--------aatAGTTGATTCTGACTAGTCAACCAAGACTT-AATTAGCACCAATGCTTCTGAATG--------CTTTACTGCTTCTC-AGGT-----GAGTATACAATGTGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751475 101 + 3513951 atgaatgaatg--------aatAGCTGATTCTGACTAGTCAACCAAGACTT-AATTAGCACCAATGCTTCTGGATG--------CTTTATTGCTTCTC-AGGT-----GAGCATGCAATGCAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1800948 109 + 1920343 atgaatgaatgaatgaaCAAATAGCTGATTCTGACTAGTCGACCAAGACTT-AAATAGCACCAATGCTTCTGGATG--------CTTTATTGCTTCTC-AGGT-----GAATATGCAATGTGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6911973 101 - 7032639 atgaatgaatg--------aatAGCTGATTCTGACTAGTCAACCAAGACTT-AATTAGCACCAATGCTTCTGGATG--------CTTTATTGCTTCTC-AGAT-----GAGTATGCAATGTGAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22723115 114 + 28711273 ATAAAACAATA--------AATAGCTGATACTGATTGATCAACAAATACCT-AATTAGCATGAATGTTTCTGGATGCGTCGATGCTTTACTGCTCTTC-AAGGGGGGTGGGTACACAATACAAA i otoGar3.GL873537 I 4 I 4 s canFam3.chr9 21339822 97 + 61074082 ------AAATG--------A-------ATTCTGACTAGTCAACCAAAACTT-AGCTAGTGCAAAAGATTCTGGATGCATTGATGCTTTAAAGCTTCTCAAGGG-----GAGTGTGCAGTATAAA i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 310473 111 - 852752 acaaatgaatg--------aatAGCTGACTCTACTTAGTCGATCAAAAATTCAATAAGCACCAGTGTCTCTGGATGCGCTGATGCTTTGCTTCTCCTT-AAGAA----GAAAATACAATGTGAA i dasNov3.JH570468 C 0 I 3 e proCoq1.NW_012135969v1 2921102 84 + 8555354 I e micMur3.chr16 35839133 360 - 65901067 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=569101.000000 s hg38.chr17_GL383564v2_alt 7849 46 + 133151 AGAAGAAAGAAAAAAAG----GCGCCTCTCAATCGTCAAATATCAGTAGA s panTro5.chr17 16201727 46 + 83181570 AGAAGAAAGAAAAAAAG----GCGCCTCTCAATCGTCAAATATCAGTAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109084 46 + 83442489 AGAAGAAAGAAAAAAAG----GCGCCTCTCAATCGTCAAATATCAGTAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944200 46 + 4267968 AGAAGAAAGAAAAAAAG----GCGCCTCTCAACCGTCAAATATCAGTAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922476 46 - 2193130 AGAAGAAAGATAAAAAG----GTGCCTCTCAATCGTCAAATATCAGTAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996791 47 - 77216781 AGAAGAAAGAAAAAAAA---GGCGCCTCAAAATCGTCAAATATCAGTAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909393 47 - 80997621 AGAAGAAAGAAAAAAAA---GGCGCCTCAAAATCGTCAAATATCAGTAGA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852768 47 - 8458610 AGAAGAAAGAAAAAAAA---GGCGCCTCAAAATCGTCAAATATCAGTAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809092 46 + 75148670 AGAAGAATGAAAAAAAC----GCGCCTCTCAATCGTCAAATATCAGTAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032257 47 + 4244037 AGAAGAAAGAAAAAAAA---GGCGCCTCAAAATCGTCAAATATCAGTAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059466 46 + 4569836 AGAAGAAAGGAAAAAAG----GCGCCTCTCAATCGTCAAATATCAGTAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025383 46 - 159171411 AGAAGAAAGAAAAAAAG----GCACCTCTCAATCATCAGTTACCAGTAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751576 46 + 3513951 AGAAGAAAGAAAAAAAG----GTACCTCTCCATCATCAATTATCAGTAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801057 46 + 1920343 AGAAGAAAGAAAAAAAG----GCACCTCTCAATCATCAATTATCAGTAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912074 46 - 7032639 AGAAGAAAGAAAAAAAG----GCACCTCTCAATCATCAATTATCAGTAGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839493 46 - 65901067 AGAAGAAAGAAGAAATG----GGGTCTCTCAGTAATCAAATATCAGTAGA i micMur3.chr16 I 360 C 0 s proCoq1.NW_012135969v1 2921186 46 + 8555354 AGAAGAAAGAAGAAATG----GGGTCTCTCAATAATCAAATATCAGTAGA i proCoq1.NW_012135969v1 I 84 I 18 s otoGar3.GL873537 22723233 46 + 28711273 AGAAAAAGAAAAAAATG----GGGCCTCTCTATCATCATGCATTAATATG i otoGar3.GL873537 I 4 I 1 s canFam3.chr9 21339923 46 + 61074082 AGAAGAAAGAAGAAATG----GGACTTGACAATAATTAAGTATCTGTAGA i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 310587 50 - 852752 AGAAGAAAGTAGAAGAGATGGGGGCCTCTCAATGATAAAATATCAATAGA i dasNov3.JH570468 I 3 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=195880.000000 s hg38.chr17_GL383564v2_alt 7895 20 + 133151 TGCATTGGTTTTATTAACTG s panTro5.chr17 16201773 20 + 83181570 TGCATTGGTTTTATTAACTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109130 20 + 83442489 TGCATTGGTTTTATTAACTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944246 20 + 4267968 TGCATTGGTTTTATTAACTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922522 20 - 2193130 TGCATTGGTTTTATTAACTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996838 20 - 77216781 TGCATTGGTTTTATTAACTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909440 20 - 80997621 TGCATTGGTTTTATTAACTG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852815 20 - 8458610 TGCATTGGTTTTATTAACTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809138 20 + 75148670 TGCATTGGTTTTATTAACTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032304 20 + 4244037 TGCATTGGTTTTATTAACTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059512 20 + 4569836 TGCATTGGTTTTATTAACTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025429 20 - 159171411 TCCATTGGTTTTATAAACTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751622 20 + 3513951 TCCATTGGTTTTATAAACTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801103 20 + 1920343 TCTATTGGTTTTATAAACTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912120 20 - 7032639 CCCATTGGTTTTATAAACTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839539 20 - 65901067 CCCACTAGTTTTATGAAATC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22723280 16 + 28711273 TCCA----TTTTATGAAATG i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21339969 20 + 61074082 CTTACCAGTTTTATAAACTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310637 7 - 852752 --CTTTGAT----------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2921232 18 + 8555354 I e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=512227.000000 s hg38.chr17_GL383564v2_alt 7915 44 + 133151 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTCAGTCTT-GCA-CAGGC s panTro5.chr17 16201793 44 + 83181570 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109150 44 + 83442489 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944266 44 + 4267968 ACATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922542 132 - 2193130 ATATTTTCTCTTCAAAGGAAGGGctgcacaatgtgtaggtttgttccctaaaacctaaagtataataaaaaaaaataaataaaataaaataaaaaaaaaacaaaGGAAGGGCT------------------------------------------------------------------------GATTGAGTCTT-GCC-CAAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996858 44 - 77216781 ATATTTTATCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909460 44 - 80997621 ATATTTTATCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852835 44 - 8458610 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAAGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809158 44 + 75148670 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032324 44 + 4244037 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059532 44 + 4569836 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGGCT------------------------------------------------------------------------GATTGAGTCTT-GCA-CAGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025449 44 - 159171411 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGACT------------------------------------------------------------------------GGTTGAGTCTT-GCA-CAGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751642 44 + 3513951 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGACT------------------------------------------------------------------------GGTTGAGTCTT-GCA-CAGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801123 44 + 1920343 ATATTTCCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGACT------------------------------------------------------------------------GGTTGAGTCTT-GCA-CAGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912140 44 - 7032639 ATATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGAAAGACT------------------------------------------------------------------------GGTTGAGTCTT-GCA-CAGGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839559 44 - 65901067 ATATTTTCTCTT----------------------------------------------------------------------------------------TGGAGCAAAGGCT------------------------------------------------------------------------GGTTGAGTCCT-GCA-CAGGT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2921250 44 + 8555354 ATATTTTCTCTT----------------------------------------------------------------------------------------TGGAGCAAAGGCT------------------------------------------------------------------------GGTTGAGTCTT-GCA-CAGGT i proCoq1.NW_012135969v1 I 18 C 0 s otoGar3.GL873537 22723296 44 + 28711273 ACGTCTTCTCTT----------------------------------------------------------------------------------------CAGACCAAAGACT------------------------------------------------------------------------GGGTGAGTTTT-GCA-CAGGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21339989 116 + 61074082 -GTGTTTCTGTT----------------------------------------------------------------------------------------CAAAGGAAATGCTGTGTGggggcacctgtgtggctcagtggttgagcatctgcctttggctcaggttgtgattccggggtcctgggatcaagtcct-gtatcaggc i canFam3.chr9 C 0 I 105 s dasNov3.JH570468 310644 44 - 852752 -TATTTTCTCTT----------------------------------------------------------------------------------------CAAAGGACAGGCT------------------------------------------------------------------------GGTTGACTTGTAGCA-CAGGG i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=1785036.000000 s hg38.chr17_GL383564v2_alt 7959 140 + 133151 GAAAGATCCAGTGGGTCCC----------ATTGGTTCTCTGTGTCTCCTGCTACACAAATTACTGACGGAAAGATTTG-AGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CAATTGGGGCCTGAATCAACTGCTGG s panTro5.chr17 16201837 140 + 83181570 GAAAGATCCACTGGGTCCC----------ATTGGTTCTCTGTGTCTCCTGCTACACAAATTACTGACGGAAAGATTTG-AGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CAACTGGGGCCTGAATCAACTGCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109194 140 + 83442489 GAAAGATCCACTGGGTCCC----------ATTGGTTCTCTGTGTCTCCTGCTACACAAATTACTGACGGAAAGATTTG-AGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CAACTGGGGCCTGAATCAACTGCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944310 140 + 4267968 GAAAGATCCACTGGGTCCC----------ATTGGTTCTCTGTGTCTCCTGCTACACAAATTACTGACGGAAAGATTTG-AGCCTTCATTGTGACCACATCCAT--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATTTGGGGCCTGAATCAACTGCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922674 140 - 2193130 GAAAGAGCCACTGGGTCCC----------ATTGATTCTCTGTGTCTCCTGCTACACAAATTACTGATGGAAAGATTTG-AGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATCTGGGGCCTGATTCAACTGCTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29996902 140 - 77216781 GAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTGCACAAATTACTGACGGAAAGATTTG-GGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATGTGGGGCCTGAATCAACTGCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909504 140 - 80997621 GAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTGCACAAATTACTGACGGAAAGATTTG-GGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATGTGGGGCCTGAATCAACTGCTGG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1852879 140 - 8458610 GAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTGCACAAATTACTGACGGAAAGATTTG-GGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATTTGGGGCCTGAATCAACTGCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809202 140 + 75148670 GAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTGCACAAATTACTGACAGAAAGATTTG-GGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATTTGGGGCCTGAATCAACTGCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032368 140 + 4244037 GAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTGCACAAATTACTGACGGAAAGATTTG-GGCCTTCATTGTGACCACATCCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATTTGGGGCCTGAATCAACTGCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059576 140 + 4569836 AAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTACACAAATTACTGACGGAAAGATTTG-GGCCTTCATTGTGACCACATCCAT--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATTTGGGGCCTGAATCAACTGCTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025493 138 - 159171411 GAAAGAGCCACTGGGTCCC----------ATTGGT--TCTGTCTCTCCTGCTACACACATCACTAACTGAAAGATTTG-AGCCTTCATCATGGCCACCTCCAC--AGAGAC-----CA---TA----GTCCGGAAAGGG--CATTTGGGGCCTGAATCAACTGTTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751686 140 + 3513951 GAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTACACACATCACTAACTGAAAGATTTG-AGCCTTCATTGTGGCTACCTTCAC--AGAGAC-----CA---TA----GTCCAGAGAGAG--CATTTGGGGCCTGAATCAACTGTTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801167 138 + 1920343 GAAAGAGCCACTGGGTCCC----------ATTGGT--TCTGTCTCTCCTGCTACACACATCACTAACTGAAAGATTTG-AGCCTTCATTGTGGCCACCTCCAC--AGAGAC-----CA---TA----GTCCGGAGAGAG--CATTTGGGGTCTGAATCAACTGTTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912184 139 - 7032639 AAAAGAGCCACTGGGTCCC----------ATTGGTTCTCTGTCTCTCCTGCTACACACACCACTAACTGAAAGATTTG-AGCCTTCACTGTGGCCACCGCCAC--AGAGAC-----CA---TA----GTCTGGAGA-AG--CGTTCGGGGCCTGAATCACCTGTTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839603 145 - 65901067 GATTGGGCCAGTGGGTCCC----------AGGGGTTTTCTGTCTCTCCTGCCACACAAATCATTGATGGAAAGATTTG-ATTCTTCACTGTGGCTGCATCCAG--GGAGAC-----CAGCCCA----GTCGACAGAGAGGACATGTGGGGCCAGGATTAACTGCTGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2921294 145 + 8555354 GAGAGGGCCAGTGGATCTC----------AGGGGTTTTCTGTCTCTCCTGCTACACGAATCATTGACGGGAAGATTTG-ACCCTTCACTGTGGCTGTGTCCAC--GGAGAC-----CAGCCCA----GTCGACAGAGAGGACATGTGGGGCCTGGATTAACTGCTGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22723340 145 + 28711273 GAGTGGACCAGTGGGTCCC----------AGAGCTTCTTGGTCTCT-CTGCTACACAAATTACTGACTGGAAGATTTGAATTCTTCACTGTGGCCATATCCAT--GGAGAC-----CAGCCCA----GTCCAGACGGAGGCTATGTGGGCTGTGAATTAACTGCGGG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340210 156 + 61074082 GAAAGTCTGGGTGAGTCTAAGCATAGGTGATAGATTCATTGTCCCTCTTGCTACACA-ATCACTGACCAAAAGATTTA-ATCCTTAAGTGTGGCCAAATCCAC--AGAGACACTGGCC---CA----GTCCAGAAAGAGGACATTTGGCAGTTGAATTAACTGCTAG i canFam3.chr9 I 105 C 0 s dasNov3.JH570468 310688 148 - 852752 GAGAGAGCCACTGGATCTT----------ACAGGATCACTGTCTCTCTTGCTATACAAGTCATTGACTGTAGGATTTG-ATTCCTCGGTATGGCCACATCTACAGAGAGAC-----CA---TATCCTGTCCAGAGAGAGGACATTTGGGGGCTGAATTAACTACTGT i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1960238 5564 + 10377808 M a score=1549207.000000 s hg38.chr17_GL383564v2_alt 8099 101 + 133151 TGTTTGTTGAGCAGAAACA-GTGAGTCTCTGACTTCCCA-CCAACAGCTAACCTGA-TATGGAAGAGCCAAGAGGCATCTCAGATTTGTCAACATTGCTTTAAT s panTro5.chr17 16201977 101 + 83181570 TGTTTGTTGAGCAGAAACA-ATGAGTCTCTGACTTCCCA-CCAACAGCTAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTTGTCAACATTGCTTTAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109334 101 + 83442489 TGTTTGTTGAGCAGAAACA-ATGAGTCTCTGACTTCCCA-CCAACAGCTAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTTGTCAACATTGCTTTAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944450 101 + 4267968 TGTTTGTTGAGCAGAAACA-ATGAGTCTCTGACTTCCCA-CCAACAGCTAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTTGTCAACATTGCTTTAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922814 101 - 2193130 TGTTTGTTGAGCAGAAACA-ATGAATCTTTGACTTCCCA-CCAACAGCCAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTTGTCAACATTGCTTTAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997042 101 - 77216781 TGTTTGTTGAGCAGAAACA-ACGAATCTCTGACTTCCCA-CCAACAGCCAACCTGA-TTTCAAAGAGCCAAGAAGCATCTCAGATTCGTCAACATTCCTTTAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909644 101 - 80997621 TGTTTGTTGAGCAGAAACA-ACGAATCTCTGACTTCCCA-CCAACAGCCAACCTGA-TTTCAAAGAGCCAAGAAGCATCTCAGATTCGTCAACATTCCTTTAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1965875 103 + 10377808 TGTTTGTTGAGCAGAAACAGACGAATCTCTGACTTCCCAGCCAACAGCCAACCTGATTTTCAAAGAGCCAAGAAGCATCTCAGATTTGTC-ACATTCCTTTAAT i macNem1.NW_012014910v1 M 5564 C 0 s cerAty1.NW_012006043v1 1853019 101 - 8458610 TGTTTGTTGAGCAGAAACA-ACAAATCTCTGACTTCCCA-CCAACAGCCAACCTGA-TTTCAAAGAGCCAAGAAGCATCTCAGATTTGTCAACATTGCTTTAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809342 101 + 75148670 TGTTTGTTGAGCAGAAACA-ACAAATCTCTGACTTCCCA-CCAACAGCCAACCTGA-TTTCAAAGAGCCAAGAAGCATCTCAGATTTGTCAACATTGCTTTAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032508 101 + 4244037 TGTTTGTTGAGCAGAAACA-ACAAATCTCTGACTTCCCA-CCAACAGCCAACCTGA-TTTCAAAGAGCCAAGAAGCATCTCAGATTTGTCAACATTGCTTTAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059716 101 + 4569836 TGTTTGTTGAGCAGAAACA-ATGAATCTCTGACTTCCCA-CCAACAGCCAACCTGA-TTTCAAAGAGCCAAGAAGCATCTCAGATTTGTCAACATTGCTTTAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025631 101 - 159171411 TGTTTGCTGAGCAGAAATG-ATGAATCTCTGACCTCCAA-CCAACAGCCAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTCGTCAACATTCCTTTAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751826 101 + 3513951 TGTTTGCTGAGCAGAAACA-ATGAATCTCTGACCTCCCA-CCAACAGCCAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTCGTCAACATTCCTTTAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801305 101 + 1920343 TGTTTGCTGAGCAGAAACA-ATGAATCTCTGACCTCCCA-CCAATAGCCAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTCGTCAACATTCCTTTAAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912323 101 - 7032639 TGTTTGCTGAGCAGAAACA-ATGAATCTCTGACCTCCAA-CCAACAGCCAACCTGA-TATCAAAGAGCCAAGAGGCATCTCAGATTCGTCAACATTCCTTTAAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839748 100 - 65901067 TGTTTGCCGAGTAGAAATA-ATGAATCTCTGACTTCCCA-CC-ACAGCCAACCTGA-TATCAAAGAGTCAAGAGCCACCTCAGATTCATCAACATTCCTTTAAC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2921439 101 + 8555354 TGTTTGTTGAGTAGAAATA-ATGAATCTCTGACCTCCCA-CCAACAGCCAACCTGA-TATCAAAGAGTCAAGAGGCACCTTGGATTCATCAACCTTCCTTTAAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22723485 101 + 28711273 TGTTTCTTGAGCAGAAGTA-ATGAATCTTTGTCTTCCTG-CTAACAGCCAACCTGA-TATCAAAGGGCCAGGAGGCACCTCAGATTCCTCACCATTCCTTTAAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340366 98 + 61074082 TGATTGTTAAGTAGTAAT--ATAAATCTCTGACCTTTCC-TCAATAGACAA-CTAA-TATCAAAAAGCAAAG-GGCACCTCAACTTCATCAACATTCCTTTAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 310836 91 - 852752 CATTCTCTGAGCAGGGAT--ATGAATTTCAGACCTCCCA-TCAACCGCAAACCTGA-TATCAAAG---------TCTCCTCAGATTCATCAAAATTCCTTTAAT i dasNov3.JH570468 C 0 I 553 a score=260390.000000 s hg38.chr17_GL383564v2_alt 8200 20 + 133151 GAGCTGAGGAACTTCTCATG s panTro5.chr17 16202078 20 + 83181570 GAGCTGAGGAACTTCTCATG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109435 20 + 83442489 GAGCTGAGGAACTTCTCATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944551 20 + 4267968 GAGCTGAGGAACTTCTCATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922915 20 - 2193130 GAGCTGAGGAACTTTTCATG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997143 20 - 77216781 GAGCTGAGAAACTTTTCATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909745 20 - 80997621 GAGCTGAGAAACTTTTCATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1965978 18 + 10377808 GAGCTGAGAA--CTTTCATT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853120 20 - 8458610 GAGCTGAGAAACTTTTCATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809443 20 + 75148670 GAGCTGAGAAACTTTTCATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032609 20 + 4244037 GAGCTGAGAAACTTTTCATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059817 20 + 4569836 GAGCTGAGAAACTTTTCATG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025732 20 - 159171411 GAGCTGAGAAACTTTTCATT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751927 20 + 3513951 GAGCTGAGAAACTTTTCATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801406 20 + 1920343 GAGCTGAGAAACTTTTCATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912424 20 - 7032639 GAGCTGAGAAACTTTTCATG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839848 20 - 65901067 GAGGTGAGCAACTTTTAGTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2921540 20 + 8555354 GAGGTGAGCAACGTTTAATG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22723586 18 + 28711273 GAGCTGAGCAACTTTTAA-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340464 20 + 61074082 GAGGCAAGGAACTCTTAATG i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 310927 553 - 852752 I a score=2855928.000000 s hg38.chr17_GL383564v2_alt 8220 197 + 133151 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCACTGGAGCCAACACCCGCCCAGGATGGGGTATAAAAG-GGTTGGGA----GGAGAGGAGG-CT-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGCCTCAGC-CCTAC-ACCATGA-C s panTro5.chr17 16202098 197 + 83181570 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCACTGGAGCCAACACCCACCCAGGATGGGGTATAAAAG-GGTTGGGA----GGAGAGGCGG-CT-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAACTCCTGTGC-AGCCTCAGC-CCTAC-ACCATGA-C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109455 197 + 83442489 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCACTGGAGCCAACACCCACCCAGGATGGGGTATAAAAG-GGTTGGGA----GGAGAGGCGG-CT-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAACTCCTGTGC-AGCCTCAGC-CCTAC-ACCATGA-C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944571 197 + 4267968 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCACTGGAGCCAACACCCGCCCAGGATGGGGTATAAAAG-GGTTGGGA----GGAGAGGAGG-CT-TCAGTCTC-AGTGG-CTTGGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGCCTCAGC-CCTAC-ACCATGA-C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1922935 197 - 2193130 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAGCAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCACTGGAGCCAACACCCACTCAGGATGGGGTATAAAAG-GGTTGGGA----GGAGAGGAAG-CT-TCAGTCTC-AGTGG-CTTAGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGCCTCAGC-CCTAC-ACCATGA-C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997163 197 - 77216781 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCAGGACGGGGTATAAAAG-GGCTGGGA----GGAGAGGAGG-CC-TCAGTCTC-AGTGG-CTCGGC--GTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGTCTCAGC-CCTAC-ACCATGA-C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909765 197 - 80997621 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCAGGACGGGGTATAAAAG-GGCTGGGA----GGAGAGGAGG-CC-TCAGTCTC-AGTGG-CTCGGC--GTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGTCTCAGC-CCTAC-ACCATGA-C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1965996 213 + 10377808 GCGTATAACTCAGCAGCTGCAGT----AACA-GATGATGGCACCACAACAAGCGTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACACCACCAGAC--AGGTATAAAAGAGGCTGGGATTGGGAAGAGGAGG-CC-TCAGTCTCAAGTGGCCTCGGCTAGTTCCCAAGCTTGATCTGAAGCTCCTGTGCTAGTCTCAGG-CCTAC-ACCATGAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853140 197 - 8458610 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCAGGACGGGGTATAAAAG-GGCTGGGA----GGAGAGGAGG-CC-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGTCTCAGC-CCTAC-ACCATGA-C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809463 196 + 75148670 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCGGGACGGGGTATAAAAG-GGCTGGG-----GGAGAGGAGG-CC-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGTCTCAGC-CCTAC-ACCATGA-C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032629 197 + 4244037 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCAGGACGGGGTATAAAAG-GGCTGGGA----GGAGAGGAGG-CC-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGTCTCAGC-CCTAC-ACCATGA-C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2059837 197 + 4569836 GTA---AACTCAGTAGCTG-AGT----AACAGGATGATGGTACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCAGGATGGGATATAAAAG-GGCTGGGA----GGAGAGGAGG-CT-TCAGTCTC-AGTGG-CTCAGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AGCCTCAGC-CCTAC-ACCATGA-C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025752 193 - 159171411 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAAC------AGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCGGGATGGGGTATAAAAG-GGCCAGGA----GGAGAAGAGG-CT-TCAGACTT-AGTGA-CTTGGC--CTTTCCAG--CTGATCTGAAGCTCCTGTGC-AACCTCAGC-CCAAC-ACCATGA-C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1751947 197 + 3513951 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGTACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCCGGATGGGGTATAAAAG-GGCCGGGA----GGAGAGGAGG-CT-TCAGACTC-AGTGG-CTTGGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AACCTCAGC-CCAAC-ACCATGA-C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801426 197 + 1920343 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACAG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCAGGATGGGGTATAAAAG-GGCCGGGA----GGAGAGGAGG-CT-TCAGACTC-AGTGA-CTTGGC--CTTCCCAG--CTGATCTGAAGCTCCTGTGC-AACCTCAGC-CCAAC-ACCATGA-C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912444 197 - 7032639 GTA---AACTCAGCAGCTG-AGT----AACAGGATGATGGCACCACAACTG--GTAGATAATCAAGGCAG-GAGGTCAAAGCATTGGAGCCAACACCCACCCGAGATGGGGTATAAAAG-GGCCAGGA----GGAGAGGAGG-CT-TCAGACTC-AGTGG-CTTGGC--CTTCCCAG--TGGATCTGAAGCTCCTGCAC-AACCTCAGC-CCAAC-ACCATGA-C i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35839868 181 - 65901067 GTA---AACCCGATAGCTG-AGT----AACAGGCTGATGGCACCACAA-------------------CAGTGAGGTCAAAGCGTTTGTACCAACACCCACCCGGGAT-GGGTATAAAAG-GGCCGGGA----GGAGAGGAGGTTC-TCAGACTC-CGAGG-CTCAGC--CTTCCCCG--CTCTTCTGAAACTCCTGTGC-AGCCTCAGC-CCAAC-GCCATGA-C i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2921560 198 + 8555354 GTA---AACCCAATAGCTG-AGT----AACAGGCTGATGGCACAAAAACAG--GTAGATAATCGAGGCAGTGAGGTCAAAGCGTTTGCACCAACACCCACCTGGGAT-GGGTATAAAAG-GGCCGGGA----GGCGAGGAGGTTC-TCAGATCC-TGTGG-CTCGGC--CTTCCCAG--CTGTTCTGAAACTCCTGTGC-AGCCTCAGC-CCAAC-GCCATGA-C i proCoq1.NW_012135969v1 C 0 I 105 s otoGar3.GL873537 22723604 197 + 28711273 -TA---AAGCCGATAGCTG-AGTAACAAACAGGCTGACGGCACAGCAACAG--GCAGGTGATCAAG-GAGTGAGGTCAAGGCGTGTGCACCAGCTCCCTCCTGGGAG-GGGTATAAAAG-GGCCAGCA----GGAGAGGAGGGCC-TCAGACTC-GTAG---TTGGC--CTTGTCAG--TTGATTTG-AACTCCTGTGC-AGCCTCTGC-CCAGC-ACCATGA-C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340484 198 + 61074082 GTA---AACTCAACAGCTG-AGT----AACAGGATGACGGTACAACAATAG--GTAGAGAATCAAGGCCCTGAGGTCAAAGCA-TGGAGCAAACACCCACCTGGGATGGGGTATAAAAG-GCCCAGGA----GGATAGGGGA-TTGTCACACTC-AGTGG-CTTGGC--CTTCCCAG--CTGCTCTGAACCTTCTGTGC-ACCCTCAGC-CCAAC-ACCATGA-C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311480 176 - 852752 GTA---AACTTAATAACTG-AGT----AACAGGATGATGGTTT----------GAAAATA-----------GATGTCAAAGCAGT-GAGCCAACACCCATCTGGGATGGGATATAAAGG-AGGTGGGA----GGGAGGAGGT-TT-TCAG-----ACTGG-CTTGGC--CTTCCCAG--CTGATCTGAAACTTCTGTGC-AGCCTCAGCGCCTACAACCATGA-C i dasNov3.JH570468 I 553 C 0 a score=923323.000000 s hg38.chr17_GL383564v2_alt 8417 73 + 133151 CTCCTTC-TACAG-CACCTCCTCATGCCCTCTGGGTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTTTGTCTCT s panTro5.chr17 16202295 73 + 83181570 CTCCTTC-TACAG-CACCTCCTCATGCCCTCTGGGTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109652 73 + 83442489 CTCCTTC-TACAG-CACCTCCTCATGCCCTCTGGGTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944768 73 + 4267968 CTCCTTC-TACAG-CACCTCCTCATGCCCTCTGGGTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923132 73 - 2193130 CTCCTTC-TACAG-CAGCTCCTCATGCCCTCTGGGTTGCACCATGGCTCCT-GGAGCAAGAAATGCCTCTGTCTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997360 73 - 77216781 CTCCTCC-TACAG-CAGCTCCTCATGCCCTCTGGTTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27909962 73 - 80997621 CTCCTCC-TACAG-CAGCTCCTCATGCCCTCTGGTTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966209 75 + 10377808 CTCCTCCGTACAGCCAGCTCCTCATG-CCTCTGGTTTGCACCATGGCTCCTGGGAGCAATGAAATTCTCTGTCTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853337 73 - 8458610 CTCCTCC-TACAG-CAGCTCCTCATGCCCTCTGGTTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809659 73 + 75148670 CTCCTCC-TACAG-CAGCTCCTCATGCCCTCTGGTTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032826 73 + 4244037 CTCCTCC-TACAG-CAGCTCCTCATGCCCTCTGGTTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060034 73 + 4569836 CTCCTCC-TACAG-CAGCTCCTCATGCCCTCTGGTTTGCACCATGGCTCCT-GGAGCAAGAAATGTCTCTGTCTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46025945 73 - 159171411 CTCCTCC-TACAG-CAGCTCCTCCTGCCTTCTGGGCTGCACCATGGCTCCT-GGAGCAAGAAATGCCTCCGTCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752144 73 + 3513951 CTCCTCC-TACAG-CAGCTCCTCCTGCCTTCTGGGCTGCACCATGGCTCCT-GGAGGAAGAAATGCCTGCGTCTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801623 73 + 1920343 CTCCTCC-TACAG-CAACTCCTCCTGCCTTCTGGGCTGCACCATGGCTCCT-GGAGCAAGAAATGCCTCCATCCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912641 73 - 7032639 CTCCTCC-TACAG-CAGCTCCTCCTGCCTTCTGGGCTGCACCATGGCTCCT-GGAGCAAGAAATGCCTCCGTCTGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35840049 73 - 65901067 TTCCTCC-TGCAT-CAGCTTACCGTGCTCTCTGGGCTGCCCCAAGCCTCTG-GGTGCAAGAAGCGTCCCTGTCCCT i micMur3.chr16 C 0 I 39 s otoGar3.GL873537 22723801 70 + 28711273 ---CTCC-TGCCT-CAGCTCATCCTGCTCTCTGGGCTGCACCAAGCCCCTG-GGAGCCAGAAACGTCTGCATCTCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340682 73 + 61074082 TTCCTGC-TACAT-CAACTCATCCCACTGTCTGGGCAGCACCAAGATGCCT-ACAGCAACAAATGTCTGTGGCCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311656 72 - 852752 TTACACC-TATGC-CAGTTCATCTTACCCTCTAGGCAGTAGCAAGGTTCCT--GAGCAACCAATATCTCCATCTCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2921758 105 + 8555354 I a score=543662.000000 s hg38.chr17_GL383564v2_alt 8490 50 + 133151 CCTATCGATGTTGGG--TGCCAGCCTGTGGCAGAGGCCAATGCT-GCCTC---CAT s panTro5.chr17 16202368 50 + 83181570 CCTATCGATGTTGGG--TGCCAGCCCGGGGCAGAGGCCAATGCT-GCCTC---CAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109725 50 + 83442489 CCTATCGATGTTGGG--TGCCAGCCCGGGGCAGAGGCCAATGCT-GCCTC---CAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944841 50 + 4267968 CCTATCGATGTTGGG--TGCCAGCCCGGGGCAGAGGCCAATGCT-GCCTC---CAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923205 50 - 2193130 CCTATCGATGTTGGG--TGCCAGCCCGGGGCAGAGGCCAATGCT-GCCTC---CAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997433 50 - 77216781 CCCATCGACGTTGGG--TGCCAGCCCGGGGCAGAGGCCAACGTT-GCCCC---CAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910035 50 - 80997621 CCCATCGACGTTGGG--TGCCAGCCCGGGGCAGAGGCCAACGTT-GCCCC---CAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966284 54 + 10377808 -CCATCGACGTTGGGGTTGCCAGCCGCGGGCAGAGGCCAACTTC-CTCGCGAAAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853410 50 - 8458610 GCCATCGACGTTGGG--TGCCAGCCCGGGGCAGAGGCCAGCGTT-GCCCC---CAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809732 50 + 75148670 CCCATCGACGTTGGG--TGCCAGCCTGGGGCAGAGGCCAACGTT-GCCCC---CAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032899 50 + 4244037 CCTATCGACGTTGGG--TGCCAGCCTGGGGCAGAGGCCAACGTT-GCCCC---CAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060107 50 + 4569836 CCCATCGACGTTGGG--TGCCAGCCCGGGGCAGAGGCCAACGTT-GCCCC---CAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026018 50 - 159171411 CCCATTGACATTGGG--TGCCAGCCCGGGGCAGAGGCCAAGGCT-GCCTC---CAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752217 50 + 3513951 CCCATCGACACTGGG--TGCCAGCCCGGGGCAGAGGCCAAGGCT-GCCTC---CAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801696 50 + 1920343 CCCATCGACATTGGG--TGCCAGCCCGGGGCAGAGGCCAAGGCT-GCCTC---CAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912714 50 - 7032639 CCCATCGACATTGGG--TGCCAGCCCGGGGCAGAGGCCAAGGCT-GCCTC---CAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22723871 33 + 28711273 CCCGTCGATGTCGAG--TGCCAGCCCAGAGTGGAG--------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340755 50 + 61074082 TGCACTGACATTGGA--GGCCAGCCTGGGTCAGAGGGCAACGCT-TCATC---TCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311728 50 - 852752 TCCATCAATATAGAG---GCCGTCCTGGGGCAGAGGTCAAGGCTGGCCTC---CCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2921758 105 + 8555354 I e micMur3.chr16 35840122 39 - 65901067 I a score=17100.000000 s hg38.chr17_GL383564v2_alt 8540 1 + 133151 G s panTro5.chr17 16202418 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109775 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944891 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923255 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997483 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910085 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966338 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853460 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809782 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032949 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060157 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026068 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752267 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801746 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912764 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2921863 1 + 8555354 G i proCoq1.NW_012135969v1 I 105 C 0 s canFam3.chr9 21340805 1 + 61074082 G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311778 1 - 852752 G i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35840122 39 - 65901067 I e otoGar3.GL873537 22723904 0 + 28711273 C a score=1584658.000000 s hg38.chr17_GL383564v2_alt 8541 103 + 133151 TGCCTCT-TGGCCAACGTGGCACACGCCAACAGAGTCCGTGT-GGGGTCGAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCAACCAG---TCACACTG--CTTGTC s panTro5.chr17 16202419 103 + 83181570 TGCCTCT-TGGCCAACGTGGCACACGCCAACAGAGTCCGTGT-GGGGTCGAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCAACCTG---TCACACTG--CTTGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109776 103 + 83442489 TGCCTCT-TGGCCAACGTGGCACACGCCAACAGAGTCCGTGT-GGGGTTGAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCAACCTG---TCACACTG--CTTGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944892 102 + 4267968 TGCCTCT-TGGCCAACGTGGCACACGCCAACAGAGTCCGTGT-GGGGTCGAC-TCCCCTGGGCC-CCCCAGCCTCTGTCTGCCCCCAACCTG---TCACACTG--CTTGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923256 103 - 2193130 TGCCTCT-TGGCCAACGTGGCACATGCCAACAGAGTCCGTGT-GGGGTCGAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCGCCGACCTG---TCACACGG--CTTGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997484 103 - 77216781 TGCCTTT-TGGCCAACGTGGCACATGCCAACCGAGTCCGCGT-GGGGTCAAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCGACCTG---CCACAGTG--CTTGTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910086 103 - 80997621 TGCCTTT-TGGCCAACGTGGCACATGCCAACCGAGTCCGCGT-GGGGTCGAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCGACCTG---CCACAGTG--CTTGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966339 108 + 10377808 TGCCTTTGCCGCCAACGTGG-ACATGCCAACCGAGTCCGCGT-GGGGTCGACTTCCCCTGGGCCGCCCCAGCCTCTGTCTG-CCCCGACCTTTTCCCACAGTGGCTTTGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853461 103 - 8458610 TGCCTTT-TGGCCAACGTGGCACATGCCAACCGAGTCCGCGT-GGGGTCGAC-TCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCGACCTG---CCACAATG--CTTGTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809783 103 + 75148670 TGCCTTT-TGGCCAACGTGGCACATGCCAACCGAGTCCGCGT-GGGATCGAC-TCCCTTGGGCCGCCCCAGCCTCTGTCTGCCCCCGACCTG---CCACAATG--CTTGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2032950 103 + 4244037 TGCCTTT-TGGCCAATGTGGCACATGCCAACCGAGTCCGCGT-GGGGTCGAC-TCCCCTGGGCCGTCCCAGCCTCTGTCTGCCTCCAACCTG---CCACAATG--CTTGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060158 103 + 4569836 TGCCTTT-TGGCCAACGTGGCACATGCCAACCGAGTCCGCGT-GGGGTCGAC-TCCCCTGGGCCGCCCAAGCCTCTGTCTGCCCCCGACCTG---CCACAATG--CTTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026069 103 - 159171411 TGCCTCT-TGGCCAATGTGGCACATGCCAATCGAGTCCGTGT-GGGGTCGAC-TCCCCTGGGCCGCCCCAGTCTCTGTCTGCCCCCCACTTG---CCACACTG--CTTGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752268 103 + 3513951 TGCCTCT-TGGCCAACGTGGCACACGCCAACCGAGTCCGTGT-GGGGTCCAC-CCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCCACCTG---CCACACTG--CTTGTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801747 103 + 1920343 TGCCTCT-TGGCCAACGTGGCACATGCCAACCGAGTCCGTGT-GGGGTCGAC-CCCGCTGGGCCGCCCCAGCCTCTGTCTGCCCCCCACCTG---CCACACTG--CTTGTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912765 103 - 7032639 TGCCTCT-TGGCCAACGTGGCACACGCCAACCGAGTCCGTGT-GGGGTCGAC-CCCCCTGGGCCGCCCCAGCCTCTGTCTGCCCCCCACCTG---TCACACTG--CTTGTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35840161 98 - 65901067 TGTCTCC-TGGCCAACCTGGCACACGCCAACCGAGTGCGCGT-GGGGTCCCC-CTCT---GGCCG-CCCAGCCTCTGTCTG-CCCCCACCTG---CCAGGCTG--CTTGTG i micMur3.chr16 I 39 C 0 s proCoq1.NW_012135969v1 2921864 103 + 8555354 TGTCTCT-TGGCCAACCTGGCACACGCCAACCGAGTGCGTGT-GGGGTCCAC-CCCTCTGGGCCGACCCAGCCTCTGCCTGCCCCCCACCTG---CCACGCTG--CTTGTC i proCoq1.NW_012135969v1 C 0 I 13700 s otoGar3.GL873537 22723904 103 + 28711273 TGTCTCT-TGGCCAACGTGGCACACGCCAACCGCATCCGTGT-GGGGTCCAC-TCCCCTGGGCCGCCCCAGCCTCTGCCTGCCCCCCAGCTG---CCATGCTG--CTTGTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340806 103 + 61074082 TGCCTGT-TGGCCACCATTGCACATGCCAACCGACCACGTGT-TGGGGCAAC-CCCTCTGGGCCAACCCAGCCTCTGTATGCCCCACAGCTG---CCAAACTG--CTTGCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311779 104 - 852752 TGCCTCT-TGGCCACCTAGGCACATGCCAACCAAGTCCATGTGGGGGTCAAC-TGCCTTGGGCTGACCCAGCCTCTGTCTGACCCTCAGCTG---CCATGCCC--CTTTCC i dasNov3.JH570468 C 0 C 0 a score=4305543.000000 s hg38.chr17_GL383564v2_alt 8644 266 + 133151 CCTTGCCAGGGACCTGTCACATTCCCGGCAACATCGGAATCTGTGGGGCCTACGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGAAG-TTCCTGAATGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCAGGAGAATGCA-GAGCTGGAG-ACCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCG-TACAATCGAGGAG-CTCCAGCAGAAGGTGAGG s panTro5.chr17 16202522 266 + 83181570 CCTTGCCAGGGACCTGTCACATTCCCGGCAACATCGGAATCTGTGGGGCCTACGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAATGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCAGGAGAATGCA-GAGCTGGAG-ACCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCT--GACTACCAGTCC-TACTTCCG-TACAATCGAGGAG-CTCCAGCAGAAGGTGAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16109879 266 + 83442489 CCTTGCCAGGGACCTGTCACATTCCCGGCAACATCGGAATCTGTGGGGCCTACGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAATGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCAGGAGAATGCA-GAGCTGGAG-ACCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCT--GACTACCAGTCC-TACTTCCG-TACAATCGAGGAG-CTCCAGCAGAAGGTGAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3944994 265 + 4267968 CCTTGCCAGGGACCTGTCACATTCCTGGCAACATCGGAATCTGTGGGGCCTA-GGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAATGA-CCGCCTGGCCAACTACTTGGAGAAGG-TGCGC--CAGCTGGAGCAGGAGAATGCA-GAGCTGGAG-ACCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCG-TACAATCGAGGAG-CTCCAGCAGAAGGTGAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923359 266 - 2193130 CCTTGCCAGGGACCTGTCACATTCCTGGCAACATCGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAATGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCAGGAGAACGCG-GAGCTGGAG-GCCACAC--TC-CTCGAGAG--GAGCAAGTGCCAT---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCG-TACCATTGAGGAG-CTCCAACAGAAGGTGAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997587 266 - 77216781 CCTTGCCAGGGACCTGTCACATTCCCGGCAACATTGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-GCCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACTGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910189 266 - 80997621 CCTTGCCAGGGACCTGTCACATTCCCGGCAACATTGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGA--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-GCCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACTGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966447 278 + 10377808 CTTTGCCAGGGACCTGTCACATTCCCGGC-ACATTGGAAATTGT-GGGCCTAT-GCAAAAACACCCTGCAATGGCCATGAGAAGGAGACCATGCAGTTTCCTGAACGACCCGGCTGGCCAACT-CCTGGAGAAGGTTGCCGCCCAGCTGGAGCGGG-GAACGCGCGAGCTGGAGAGCCACACTTTC-CTCGAGGAGCGAGCAAGTGCCAC---GAGTCCACTGGGTGCCCGGTGACTACCAGTCCTTACTTCCGCCACCATCGAGGAGCCTCCAGCAGAAGGTGAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853564 266 - 8458610 CCTTGCCAGGGACCTGTCACATTCCAGGCAACATTGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-GCCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACTGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64809886 266 + 75148670 CCTTGCCAGGGACCTGTCACATTCCCGGCAACATTGGAATCTGTGGGGCCTATGGTGAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-GCCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACTGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033053 266 + 4244037 CCTTGCCAGGGACCTGTCACATTCCAGGCAACATTGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AACGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-GCCACAC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACTGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060261 266 + 4569836 CCTTGCCAGGGACTTGCCACATTCCCGGCAACATCGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAATGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGAGAGAACGCG-GAGCTGGAG-GCCACGC--TC-CTCGAGAG--GAGCAAGTGCCAC---GAGTCCACTGTGTGCCCG--GACTACCAGTCC-TATTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026172 266 - 159171411 CCTTGCCAGGGACCTGCCACATTCCTGGCAACATCGGAATCTGTGGGGCCTATGGCGAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAATGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGA--CAGCTGGAGCGGGACAATGCA-GAGCTGGAG-AGCCAAC--TC-CGTGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752371 266 + 3513951 CCTTGCCAGGGACCTGCCACATTCCCGGCAACATCGGAATCTGTGGGGCCTACGGCGAAAACACCCTG-AATGGCCATGAGAAAGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-AGCCAAC--TC-CGTGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1801850 266 + 1920343 CCTTGCCAGGGACCTGCGACATTCCCGGCAGCATCGGAATCTGTGGGGCCTATGGCAAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCAGGAGAACGCG-GAGCTGGAG-AGCCAAC--TC-CGTGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCA-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6912868 266 - 7032639 CCTTGCCAGGGACCTGCCACATTCCCGGCAACATCGGAATCTGCGGGGCCTACGGCGAAAACACCCTG-AATGGCCATGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGCGGGAGAACGCG-GAGCTGGAG-AGCCAAC--TC-CGTGAGAG--GAGCAAGTGCCAC---GAGTCCACCGTGTGCCCC--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35840259 258 - 65901067 CCTTGCC-GGGACCTGCGACATCCC--GCAACATCGGAATCTGTGGGTCCTACTGCGAAGGCAG-CTG-AATGGCCACGAGAA-GAGACCATGCGG-TTCCTGAACGA-CCG-CTGGCCAACTA-CTGGAGAAGG-TGCGC--CAGCTGGAGGCGGACAACGCG-GACCTGGAG-G-CAAGC--TC-CGCGAGTG--GACAATGGCACAC---GAGTCCAGCGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-TTCCAGCAGAAGGTGAGG i micMur3.chr16 C 0 T 12943 s proCoq1.NW_012135969v1 2935667 266 + 8555354 CCTTACCGGGGACCTGCCACATTCCCGGCAACATCGGAATCTGTGGGGCCTACGGCGAAGGCAGCCTG-AATGGCCACGAGAAGGAGACCATGCAG-TTCCTGAACGA-CCGCCTGGCCAACTACCTGGAGAAGG-TGCGT--CAGCTGGAGCGGGACAACGCG-GAGCTGGAG-GCCAAAC--TC-CGCGAGTG--GACCAGATGCCAC---GAGTCCAGCGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTCCAGCAGAAGGTGAGG i proCoq1.NW_012135969v1 I 13700 T 46067 s otoGar3.GL873537 22724007 266 + 28711273 CCTTGCCAGGGACCTGCCATGTTCCCGGCAACATCGGGATCTGTGGGGCCTATGGCGAAGGCAGCCTG-AACGGCCACGAGAAGGAGACCATGCGT-TTCCTGAACGA-CCGGCTGGCCAACTACCTGGAGAAGG-TGCGG--CAGCTGGAGCGCGACAACGCG-GAGCTGGAG-ACCAAAC--TG-CGTGAGTG--GAGCAGGTGCCAC---GAGTCCAGCGTGTGCCCG--GACTACCAGTCC-TACTTCCG-CACCATCGAGGAG-CTGCAGCAGAAGGTGAGG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21340909 266 + 61074082 CCTTGCCAGGGACCCGCAACATTCCTGGCAACATTGGAGTCTGTGAGAACTATGGGGAAGGCGCTCCC-AATGGCCATGAGAAGGTGACCATGCAG-TTCCTGAATGA-TCGCCTGGCCAACTACCTGGAGAAGG-TGCGC--CAGCTGGAGAGGGACAATGAG-GAGCTGGAG-ACCAAGA--TC-CGAGAGTC--AAGCAAATGCCAT---GAGTCCACTGTGTGTCCA--GACTACCAGTCC-TACTTTCA-GACCATCAAGGAG-CTCCAGCAGAAGGTGAGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311883 269 - 852752 CCTTGCCAGGGACCTGCCACATTCTGGGCAGTATCAGAAGCTGTGGGGCCTGTGGTGAAGGCAACTTG-TTTGGCCATGATAAGGAGACCATGCAG-TTCCTGAATGA-CTACCTGGCCAATTATTTTGAGAAAG-TACAG--CAATTGGAGTGGGACAATGTG-GAGCTGGAG-ACTAAGA--TCTCAAGAGTC--AAGCAAATGCCACAGGGAGTTCAGGGTGTGCCTG--GACTA-TAATCC-TACTTAAA-GACTATCAAGAGA-TTCCAGCAGAAGGTGAGA i dasNov3.JH570468 C 0 C 0 a score=1988059.000000 s hg38.chr17_GL383564v2_alt 8910 173 + 133151 TGTGGGATCGCCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCTG-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAA-ATACCACACATGGAGTG--------GGAGCTTAGAGTATGGTGCTTT-GTGTGTGAACCGTCTTTCCGTT- s panTro5.chr17 16202788 173 + 83181570 TGTGGGATCGCCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCTG-CATAAGGTCCAGAGAACTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAA-ATACCACATGTGGAGTG--------GGAGCTTAGAGTATGGTGCTTT-GTGTGTGAACCGTCTTTCCATT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110145 173 + 83442489 TGTGGGATCGCCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCTG-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAA-ATACCACATGTGGAGTG--------GGAGCTTAGAGTATGGTGCTTT-GTGTGTGAACCGTCTTTCCATT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945259 173 + 4267968 TGTGGGATCCCCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCTG-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTCCTCTT-G-GACATGAGC-GTAA-ATACCACACGTGGAGTG--------GGAGCTTAGAGTATGGTGCTTT-GTGTGTGAACCATCTTTCCGTT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923625 173 - 2193130 TGCGGGATCACCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCTG-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTTTCTT-G-GACATGAGC-GTAA-ATACCACGCGTGGAGTG--------GGAGCTTAGAGTGTGGTGCTTT-GTGTGTGAACCATCTTTCCGTT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29997853 173 - 77216781 TGTGGGATCGCTT-GGGT-GTGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCCA-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAG-ACACCACACGTGGAGTG--------GGAGCTTAGAGTATGATGCTTT-GTGTGTGAACCGTCTTTCCATT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910455 173 - 80997621 TGTGGGATCGCTT-GGGT-GTGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCCA-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAG-ACACCACACGTGGAGTG--------GGAGCTTAGAGTATGATGCTTT-GTGTGTGAACCGTCTTTCCATT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966725 188 + 10377808 TGTGGGATCGTTG-GGTC-GTGCTTTGCGGTTTCTGAG-AAGGCAG--A-GC-----CTTC-GCAGG----GGAATCCACCATAAGGTCCAGAGAGCTTTGGGATCTGTGGTTTCTCTT-G-GACATGAGCGGTAGAACACCACACGTGGAGTGACGCAGCTGGAGCTTAGAGTATGATGCTTT-GTGTGTGAACCGTCTTTCCATT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1853830 173 - 8458610 TGTGGGATCACCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCCA-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAG-ACACCACACATGGAGTG--------AGAGCTTAGAGTATGATGCTTT-GTGCGTGAACCGTCTTTCCGTT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810152 173 + 75148670 TGTGGGATCGCTT-GGGT-GTGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTT-GCAGG-A--GGAATCCA-CATAAGGTCCAGAGAGCTTTGGGTTTT-TGGTTTCTCTT-G-GGCATGAGC-GTAG-ACACCACACGTGGAGTG--------GGAGCTTAGAGTATGATGCTTT-GTGTGTGAACCGTCTTTCCGTT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033319 173 + 4244037 TGTGGGATCGCTT-GGGT-GTGCT-----GGGTCTGAG-AAGGCAG-AA-GC-----CTTC-GCAGG-A--GGAATCCA-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GACATGAGC-GTAG-GCACCACACATGGAGTG--------GGAGCTTAGAGTATGATGCTTT-GTGTGTGAACCATCTTTCCGTT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060527 173 + 4569836 TGTGGGATCGCCT-GGGC-ATGCT-----GGGTCTGAG-AAGGCAG-AA-GG-----CATG-GCAGG-A--GGAATCCA-CATAAGGTCCAGAGAGCTTTGGGTTCT-TGGTTTCTCTT-G-GATATGAGC-GTAG-ACACCACACGGGGGGTG--------AGAGCTTAGAGTATGATGCTTT-GTGTGTGAACCGTCTTTCTGTT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026438 178 - 159171411 TGTGGGAACGCCT-GGGC-GTGCT-----GGGTCTGAG-AAGCCAG-AC-GGCTTCTCATG-GCAGG-A--GGAATCCA-TGTCAGGCTCAGGGAGCTTTGGGTTCT-TGGCTTCTCTT-G-GACATGAGC-ATAG-ACACCACACGTGGAGTG--------GGAGCCTAAGGTACGATGCTTT-GTGTGTGAGCCATCTTCCTGTT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752637 173 + 3513951 TGTGGGATCGCCT-GGGC-GTGCT-----GGGTCTGAG-AAGCCAG-AC-GG-----CGTG-GCAGG-A--GGAATCCA-TGTCAGGCTCAGGGAGCTCTGGGTTCT-TGGCTTCTCCT-G-GACATGAGC-ACAG-ACACCACACGTGGAGCG--------GGAGCCTAAGGTACGATGCTTT-GTGTGTGAACCGTCTTCCTGTT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802116 173 + 1920343 TGTGGGATCACCT-GGGC-GTGCT-----GGGTCTGAG-AAGCCAG-AC-AG-----CATG-GCAGG-A--GGGATCCA-TGTCAGGCTCAGGGAGCTCTGGGTTCT-TGGCTTCTCCT-G-GACATGAGC-ATAG-ACACCACACGTGGAGCG--------GGAGCCTAAGGTATGATGCTTT-GTGTGTGAACCACCTTCCTGTT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913134 173 - 7032639 TGTGGGATCGCCT-GGAC-GTGCT-----GGGTCTGAG-AAGCCAG-AC-GG-----CGTG-GCAGG-A--GGAGTCCA-TGTCAGGCTCAGGGAGCTTTGGGTTCT-TGGCTTCTCCT-G-GACATGAGC-ATAG-ACACCACACATGGAGTG--------GGGGCTTAGAGTATGATGCTTT-GTGTGTGAACCATCTTCCTGTT- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35827574 173 - 65901067 CTTGGGGTCACCA-GGGC-GAGCT-----GGGGCTGAG-AAGGCGG-AA-GG-----GCGCAGCAGG-A--AACGTCCA-CGTGAGCCCCAAAGAGCTCTGGATTCT-TGGATTCTTTTGA-GGCATGGGT-GTAG-ACACCCCACAC-GAGCT--------GGAGCCCAGGGTGTGATGCTTT-GTG-GTGAACTGTCTTCTTGGT- i micMur3.chr16 T 12943 I 12931 s otoGar3.GL873537 22724273 144 + 28711273 CGTGGGACAGCCG-GGGT-GTGCT-----GGGTCTGAG-AAGGCAG-AA-GG-----GTG--GCAGG-A---------------------AAAGAGCTTGGGGTGCT-TGGATTCTCTCTG-GACTTGGGT-GTAG-ACACCACACAT-GAGCT--------GGCACC----------TGCTTT-GTGTGTGAACCGTCTTCTTGGA- i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21341175 176 + 61074082 TTTGGAGTAGCTT-GGGAGGTGCT-----GGGGCTGAGCAAGGTGGTAG-GG-----CCTG-GCAGGCA--AGAAGCCA-CTGAAGGTTCAGGGAGCTTTGGGTTCT-TGGATTCCCTT-G-AGTGTGAGT-GTA--CTGCCACCTGTAGAGCT--------GGGGCCCAGGTTATGATGTTTT-GTGTATGAACTGTCTTCCTGGT- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 312152 170 - 852752 TCTGGAATAGCCTAGGGT-GTGCT-----GG--------AAGGGAG-AATGG-----CATG-GCAGG-AACAAAACCTG-CTTACCCTCCA-AGAGATTTTGGTTCT-TGGATTCTTTT-GAGACATGAAT-GGAG-ACACCACCTGTGGAGCT--------TGAGACCAGAGTATGATACTCTGGTACCTGAA--ATCTCCTTGCTT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2935933 46067 + 8555354 T a score=193933.000000 s hg38.chr17_GL383564v2_alt 9083 11 + 133151 TTCCTCAGATC s panTro5.chr17 16202961 11 + 83181570 TTCCTCAGATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110318 11 + 83442489 TTCCTCAGATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945432 11 + 4267968 TTCCTCAGATC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923798 11 - 2193130 TTCCTCAGATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998026 11 - 77216781 TTCCTCAGATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910628 11 - 80997621 TTCCTCAGATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966913 11 + 10377808 TTCCTCAGATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854003 11 - 8458610 TTCCTCAGATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810325 11 + 75148670 TTCCTCAGATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033492 11 + 4244037 TTCCTCAGATC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060700 11 + 4569836 TCTCTCAGATC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026616 11 - 159171411 TTCCTCAGATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752810 11 + 3513951 TTCCTCAGATC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802289 11 + 1920343 TTCCTCAGATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913307 11 - 7032639 TTCCTCAGATC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35840678 11 - 65901067 TTCCTCAGATC i micMur3.chr16 I 12931 C 0 s otoGar3.GL873537 22724418 11 + 28711273 TTCCTCAGATC i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21341352 11 + 61074082 TTCCTCAGATC i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 312322 11 - 852752 TTCCTCAGATC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2935933 46067 + 8555354 T a score=1499485.000000 s hg38.chr17_GL383564v2_alt 9094 86 + 133151 CTGTGCAGCAAGGCTGAGAATGCCAGGCTGATTGTACAAATTGACAACGCGAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT s panTro5.chr17 16202972 86 + 83181570 TTGTGCAGCAAGGCTGAGAATGCCAGGCTGATTGTACAAATTGACAACGCGAAGCTGGCTGCCGATGACTTTAGGATCAAGTAAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110329 86 + 83442489 TTGTGCAGCAAGGCTGAGAATGCCAGGCTGATTGTACAAATTGACAACGCGAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945443 86 + 4267968 CTGTGCAGCAAGGCTGAGAATGCCAGGCTGATTGTACAAATTGACAACGCGAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923809 86 - 2193130 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998037 86 - 77216781 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910639 86 - 80997621 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1966924 86 + 10377808 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854014 86 - 8458610 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCAGCTGATGACTTTAGGATCAAGTAAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810336 86 + 75148670 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033503 86 + 4244037 CTGTGCAGCAAGGCCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060711 86 + 4569836 CTGTGCAGCAAGACCGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026627 86 - 159171411 CTGTGCAGCAAGGCTGAGAACACCAGGCTGATTGTACAAATCGACAATGCCAAGCTGGCTGCCGATGACTTTAGGATCAAGTAAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752821 86 + 3513951 CTGTGCAGCAAGGCTGAGAATGCCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCCGCCGATGACTTTAGGATCAAGTAAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802300 86 + 1920343 CTGTGCAGCAAGGCTGAGAACGCCAGACTGATTGTACAAATTGACAATGCCAAGCTGGCTGCCGATGACTTTAGGATCAAGTAAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913318 86 - 7032639 CTGTGCAGCAAGGCTGAGAACACCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGGATCAAGTAAGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35840689 84 - 65901067 -CTTGCAGC-AGGCTGAGAACACCAGGCTGATTGTACAAATTGACAATGCCAAGCTGGCTGCCGATGACTTCAGGATCAAGTGAGT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2889866 86 + 8555354 CTGTGCACCAAGGCAGAGAATGCCAGGATGGTCGTGCACATTGATAATGCCAAGCTGGCTGCCGATGACTTTAGGACCAAGTGAGT i proCoq1.NW_012135969v1 T 46067 I 224 s otoGar3.GL873537 22724429 86 + 28711273 CTGTGCAGTAAGGCTGAGAACGCCAGGCTGATTGTGCAAATTGACAACGCCAAGCTGGCTGCCGATGACTTTAGGATCAAGTAAgt i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21341363 86 + 61074082 CTGTGTAGCAAGGCTGAGAATACCAGAATGGTTATCCAAATTGACAATGCCAAGCTGGCTGCTGATGACTTTAGAATCAAGTAAGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 312333 86 - 852752 CTTTATAGCAAAGCTGAGAATGCCAGGCTGTTCATACAAGTGGACAATGCCAACCTGGCAGCTGATGACATTTTAATCAAATAAGT i dasNov3.JH570468 C 0 C 0 a score=518066.000000 s hg38.chr17_GL383564v2_alt 9180 47 + 133151 CAGGatg--aggagggtcagtgtga--c--ttctct--cctgctgtatttccaag s panTro5.chr17 16203058 47 + 83181570 CAGGATG--AGGAGGGTCAGTGTGA--C--TTCTCT--CCTGCTGTATTTCCAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110415 47 + 83442489 CAGGatg--aggagggtcagtgtga--c--ttctct--cctgctgtatttccaag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945529 47 + 4267968 CAGGATG--AGGAGGGTCAGTGTGA--C--TTCCCT--Cctgctgtatttccaag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923895 47 - 2193130 CAGGCTG--AGGAGGCTCAGTGTGA--C--TTCTCT--CCTGCTGTATTTCCAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998123 47 - 77216781 CAGGCCG--AGGAGGGCCAGTGTGA--C--TTCTCT--Cctgctgtatttccagg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910725 47 - 80997621 CAGGCCG--AGGAGGGCCAGTGTGA--C--TTCTCT--CCTGCTGTATTTCCAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967010 47 + 10377808 CAGGCCG--AGGAGGGCCAGTGTGA--C--TTCTCT--Cctgctgtatttccagg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854100 47 - 8458610 CAGGCCG--AGGAGGGCCAGTGTGA--C--TTCTCT--Cctgctgtatttccagg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810422 47 + 75148670 CAGGCCG--AGGAGGGCCAATGTGA--C--TTCTCT--CCTACTGTATTTCCAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033589 47 + 4244037 CAGGCTG--AGGAGGGCCAGTGTGA--C--TTCTCT--Cctgctgtatttccagg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060797 47 + 4569836 CAGGCCA--AGGAGGGCCAGTGGGA--C--TTCTCT--Cctgctgtatttccaag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026713 46 - 159171411 CCGGCGG--AGGAGA-CCAGAGTGA--C--CTCTCT--Tctgctgtatttccaag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752907 48 + 3513951 CTGGCCA--AGGAAG-CCAGAGTGA--CTTCTCTCT--Tctgctgtatttccaag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802386 48 + 1920343 CAGGCCA--AGGAAG-CCAGAGTGA--CTTCTCTCT--Tctgctgtatttccaag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913404 48 - 7032639 CAGGCCA--AGGAAG-CCAGAGTGA--CTTCTCTCT--Tccgctgtatttccaag i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35840773 49 - 65901067 AAGGCCG--CGGAGGGCCAGGGTGACtt--ctctct--cctgctctatttccaag i micMur3.chr16 C 0 I 212 s otoGar3.GL873537 22724515 47 + 28711273 gagacca--gggaggaccagggtga--g--atctct--cctgttctatttccaag i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21341449 51 + 61074082 CGGGCTGGAAGAGAGTTCAAAGTGA--C--TCCTTTTATCTGTTCTATTTCTAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 312419 48 - 852752 AAGGGAG--AGGGGGCCCAGAGtat--c--tctttt-gtttgtttgatttcaagg i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2889952 224 + 8555354 I a score=2131451.000000 s hg38.chr17_GL383564v2_alt 9227 189 + 133151 ggcccgccccattactcagtct-atattgtaggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCACACCTTAAATTAGCCTGTTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTGAAAGAAAAAGAAGGGCTGTAGTCTAGATTGGTTAGAACCTATGTCACTTTCT---- s panTro5.chr17 16203105 190 + 83181570 GGCCCGCCCCATTACTCAGTCTTATATTGTAGGTGTTCAAAAACAGTTTTTGACTAGAAGAATA-----------------------------TTTTTCTCCACACCTTAAATTAGCCTGTTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTGAAAGAAAAAGAAGGGCTGTAGTCTAGATTGGTTAGAACCTATGTCACTTTCT---- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110462 190 + 83442489 ggcccgccccattactcagtcttatattgtaggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCACACCTTAAATTAGCCTGTTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTGAAAGAAAAAGAAGGGCTGTAGTCTAGATTGGTTAGAACCTATGTCACTTTCT---- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945576 186 + 4267968 ggcctaccccatta--aagtct-atattgtaggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCA-ACCTTAAATTAGCCTGTTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTGAAAGAAAAAGAAGGGCTGTAGTCTAGATTGGTTAGAACCTATGTCACTTTCT---- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923942 189 - 2193130 GGTCCGCCCCATTACTCAGCCT-ATATTGTAGGTGTTCAAAAACGGTTTTTGACTAGAAGAATA-----------------------------TTTCTCTCCACACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCACTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998170 189 - 77216781 ggcctgccccattactcagcct-atattataggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910772 189 - 80997621 GGCCTGCCCCATTACTCAGCCT-ATATTATAGGTGTTCAAAAACAGTTTTTGACTAGAAGAATA-----------------------------TTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967057 189 + 10377808 ggcctgccccattactcagcct-atatcataggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854147 189 - 8458610 ggcctgccccattactcagcct-atattataggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810469 189 + 75148670 GGCCTGCCCCATTACTCAGCCT-ATATTATAGGTGCTCAAAAACAGTTTTTGACTAGAAGAATA-----------------------------TTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033636 189 + 4244037 ggcctgccccattactcagcct-atattataggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCAAACCTTAAATTAGCTTATTGCTAGAAATGGTCATTATATAGGAGGAAAGAGAATATAAGCATTAAAAGAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2060844 189 + 4569836 ggcctgccccattactcagcct-atactataggtgttcaaaaacagtttttgactagaagaatA-----------------------------TTTCTCTCCAAACTTTAAATTAGCCTATCACTAGAAATGGTCACTATACAGGAGGAAAGAGAATATAAGCATTAAAATAAAAAGAAGGGCTATAGTCTAGATTGGTTAGAACCTATGTCATTTTCT---- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026759 212 - 159171411 ggcctgtcccgacacccagcgt-atattgtaggtgttcaaaaacagtttttgactagatgaaCAAAGGAATGA----ATAAATGTCCACTTCCTTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATGTAGGAGGAAAGAGA-ATCAAGCATTAAAAGGAAAAGACGGGC-ATAGTCTAGATTGGTTAGAACCTATGTCATTTCCC---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1752955 213 + 3513951 ggcctgtcccactacccagcat-atatcgtaggtgttcaaaaacagtttttgactagatgaaGAAAGGAATGA----ATAAATGTCCACTTCCTTTCTCTCCAAACCTTAAATTAGCTTATTGCTAGAAATCATCATTATGTAGGAGGAAAGAGGTGGCAAGTATTAAAAGGAAAAGAGGGGC-ATAGTCTAGATTGGTTAGAACCTGTGTCATTTCCC---- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802434 213 + 1920343 ggcctgtcccaatacccagcgt-atatcgtaggtgttcaaaagcagtttttgactagatgaaCTAAGGAGTGA----ATAAATGTCCACTTCCTTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTATGTAGGAGGAAAGAGAATGCAAGCATTAAAAGGAAAAGAGGGGC-ATAGTCTAGATTAGTTGGAACACATGTCATTTCCC---- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913452 213 - 7032639 ggcctgtcccaatacccagcgt-atattgtaggtgttcaaaaacagtttttgactaaatgaaCAAAGGAATGA----ATACATGTCCACTTCCTTTCTCTCCAAACCTTAAATTAGCCTATTGCTAGAAATGGTCATTACGTAGGAGGAAGGAGAATGCAAGCATTAAAAGGAAAAGAGGGGC-ATAGTCTAGACTGGTTAGAACCTATGTCATTTCCC---- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22724562 192 + 28711273 tgactgtcacaatacttggcca---aatgtaggtattcaaaaatgcttattgattagaagaatgaatAAG-----------------------TGTCTGTCCAAACCTTAAATTAGCTTATTACTAGAAATGGCCATTATACAGATGGAA-GAAAATAAAAGCATTAAAACAAGAAGAGATGGTATAGTATAGATTGGGTAGGACTTACAGAATTCCCC---- i otoGar3.GL873537 C 0 I 10 s canFam3.chr9 21341500 213 + 61074082 TGCCCATCATGGTACT-GGCCC-AAA--GTAGGTGTTTGAAAATTGTTGCTGACTAGAAGCATGAATAGATCATTACATAGGTGTTCACTTTCTTCCTTTCCAAACC-AACTTTAACCTATTACTAGAAATGGTCCTTATATAGGA-AAAAGAGAACAAAAGCATTGAAACAGAAAGAGGAAGAATCATCTAGATTGGTCAGGTTCTATGTCATTTTCT---- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 312467 220 - 852752 tgcctggcacagtacttggcag-ata--gcgggtgttcaaaaatggtagtagagtagaaaaatGAACAAATCAGTGAATAGGTGTCTATTCTCTTCATCTCCAAACTTTAATTTAGTATATTACTAGACATAATCATTATATAGGACGGAAGAGAAGAAAAGCATTAAAACAAATAAGAGGTTGATTATCTCAATTCATTAGGTCATATGTCCTTCCCCTCCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2889952 224 + 8555354 I e micMur3.chr16 35840822 212 - 65901067 I a score=558282.000000 s hg38.chr17_GL383564v2_alt 9416 41 + 133151 CCCATATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA s panTro5.chr17 16203295 41 + 83181570 CCCATATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110652 41 + 83442489 CCCATATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945762 41 + 4267968 CCCATATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924131 41 - 2193130 CCCATATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998359 41 - 77216781 CCCACATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27910961 41 - 80997621 CCCACATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967246 41 + 10377808 CCCACATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854336 41 - 8458610 CCCACATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810658 41 + 75148670 CCCACATCTAGAAGATAAGAGGATTT--TACTTT--TCAATCAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033825 41 + 4244037 CCCACATCTAGAAGATAAGAGGATTT--TGCTTT--TCAATCAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061033 41 + 4569836 CCCACATCTAGAAGATAAGAGGAGTT--TGCTTT--TCAATCAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46026971 41 - 159171411 CCCGTATCTAGAAGATAAGAGGATTT--GGCTTT--TCAACCAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753168 41 + 3513951 CCCATATCTAGAAGATAAGAGGATTT--GGCTTT--TCAACCAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802647 41 + 1920343 CCCCTATCCAGAAGATAAGAGGATTT--GGCTTT--TCAACTAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913665 41 - 7032639 CCCATATCTAGAAGATAAGAGGATTT--GGCTTT--TCAACCAGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841034 40 - 65901067 CCCATATCTAGAAAATAAGAGGGTTT--TGCCTT---TAAACAGG i micMur3.chr16 I 212 C 0 s otoGar3.GL873537 22724764 40 + 28711273 -CCATATCTAGCATATAAGAGGATTT--AGCTTT--ATAAACAGC i otoGar3.GL873537 I 10 I 397 s canFam3.chr9 21341714 43 + 61074082 CCCACATCTAGAAGAAAAGAGAGCTT--TGTGTTAGATAGCCAGA i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 312687 43 - 852752 CCTATATCTAGAAGAAAAGTGTTTTTAAAATTTT--GTAACCAGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2889952 224 + 8555354 I a score=418635.000000 s hg38.chr17_GL383564v2_alt 9457 30 + 133151 AGTAAAATTGAGTCATCACAAAAATAAACT s panTro5.chr17 16203336 30 + 83181570 AGTAAAATTGAGTCATCACAAAAATAAACT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110693 30 + 83442489 AGTAAAATTGAGTCATCACAAAAATAAACT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945803 30 + 4267968 AGTAAAATTGAGTCATCACAAAAATAAACT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924172 30 - 2193130 AGTAAAATTGAGTCATCACAAAAATAAACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998400 30 - 77216781 AGTAAAATTGAGTCATCACAAAAATAAACT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911002 30 - 80997621 AGTAAAATTGAGTCATCACAAAAATAAACT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967287 30 + 10377808 AGTAAAATTGAGTCATCACAAAAATAAACT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854377 30 - 8458610 AGTAAAATTGAGTCATCACAAAAATAAACT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810699 30 + 75148670 AGTAAAATTGAGTCGTCACAAAAATAAACT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033866 30 + 4244037 AGTAAAATTGAGTCATCACAAAAATAAACT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061074 30 + 4569836 AGTAAAATTGAGTCATCACAAAAATAAACT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027012 30 - 159171411 AGTCAAATGGAGTCATCATCAAAATAAACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753209 30 + 3513951 AGTCAAATGGAGTCATCACAAAAATAAAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802688 30 + 1920343 AGTCAAACGGAGTCATCACAAAAACAAGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913706 30 - 7032639 AGTCAAATGGAGTCATCACAAAAATAAACT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841074 30 - 65901067 AGCAAAATTCAGTCATTGCAAGAATAAACT i micMur3.chr16 C 0 I 505 s otoGar3.GL873537 22725201 29 + 28711273 AGCAAAATTGAGTCATCACAAGAATAAAG- i otoGar3.GL873537 I 397 C 0 s canFam3.chr9 21341757 30 + 61074082 AACAAAATCGAGTCATTGCAAGAATAAACT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 312730 30 - 852752 AGCAAAAACAGATTATTGCAAGAATAAACT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2889952 224 + 8555354 I a score=6197434.000000 s hg38.chr17_GL383564v2_alt 9487 538 + 133151 GTCAATGCATAG------GTTGTTGCTAGACTCTCTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCTAG-AGTTGTGCTTGAATGAAGGGGAAAAGCAAGAAAACAACGAGAAATAATGAATCCAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGGCTTA-TTTTTA-GCCA--TTC-TTTTTCCTGGCCAAATGACTCCTATTATGgcagaataaatgctgcatttgaagtcagaacacttaggatgagtccatgcatttactattaact-gggcatggaattctgaacaactcgtgttttgtttctgagcctcagtcttccatctggt------caatgggcataatg---------tcctgactacaaaccgtgtcgctgcagggttgagaatagtgtatACTGCCCACGTGAACAAATAAGGATCCAAGGTGGTGTGGGAGGTAGGAAGCCAGGGCAGCTGAGAGGGGCTATTGGG-GCATTCTTTTTGACCCTGTGCCTCCTGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTTCA s panTro5.chr17 16203366 538 + 83181570 GTCAATGCATAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCTAG-AGTTGTGCTTGAATGAAGGGGAAAAGCAAGAAAACAATGAGAAATAATGAATCCAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGGCTTA-TTTTTA-GCCA--TTC-TTTTTCCTGGCCAAATGATTCCTATTATGgcagaataaatgctgcatctgaagtcagaacacttaggatgagtccatgcatttactattaact-gggcatggaattctgaacaactcgtgttttgtttctgagcctcagtcttccatctggt------caatgggcataatg---------tcctgactacAAACTGTGTCGCTGCACGGTTGAGAATAGTGTATACTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTAGGAAGCCAGGGCAGCTGAGAGGGGCTCTTGGG-GCATTCTTTTTGACCCTGTACCTCCTGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16110723 538 + 83442489 GTCAATGCATAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCTAG-AGTTGTGCTTGAATGAAGGGGAAAAGCAAGAAAACAATGAGAAATAATGAATCCAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGGCTTA-TTTTTA-GCCA--TTC-TTTTTCCTGGCCAAATGATTCCTATTATGgcagaataaatgctgcatttgaagtcagaacacttaggatgagtccatgcatttactattaact-gggcatggaattctgaacaactcgtgttttgtttctgagcctcagtcttccatctggt------caatgggcataatg---------tcctgactacAAACTGTGTCGCTGCACGGTTGAGAATAGTGTATACTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTAGGAAGCCAGGGCAGCTGAGAGGGGCTCTTGGG-GCATTCTTTTTGACCCTGTACCTCCTGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3945833 537 + 4267968 GTCAATGTGTAG------GCTGTTGCTAGACTCACTGACTTTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCTAG-AGTTGTGCTTGAATGAAGGGGAAAAGCAAGAAAACAACGAGAAATAATGAATCCAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGGCTTA-TTTTTA-GCCA--TTC-TTTTTCCTGGCCAAATGACTCCTATTATGgcagaataaatgctgcatttgaagtcagaacacttaggatgagtccatgcatttactattaact-gggcatggaattctgaacaactcgtgttttgtttctgagcctcagtcttccatctggt------caatgggcataatg---------tcctgactacaaactgtgtcgctgcaggattgagaatagtgtatACTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTAGGAAGCCAGGGCAGCTGAGA-GGGCTCTTGGG-GCATTCTTTTTGACCCTGTACCTCCTGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924202 539 - 2193130 GTCAATGCATAG------GTTGTTGCCAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCTAG-AGTTGTGCTTGAATGAAGGAGAAAAGCAGGAAAACAATGAGAAATAATGAACCCAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGGCTTA-TTTTTA-GCCA--TTC-TTTTCCCTGGCCAAATGACTTCTATTATGgcagaataaatgatgcatttgaagtcagaacacttaggatgagtccatgcatttactattaact-gggcatggaattctgaacaactcatgttttgtttctgagcctcagtcttccatctggt------caatgggcataata---------tcctgactacaaactgtgtagctgcagggttgagcatagtgtatatTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTAGGAAGCCAGGGCAGCCGAGAGGGGCTATTGGGAGCATTCTTTTTGACCTTGTACCTCCTGTGACGGAAGGCTGGAGAGTGAGCACTCCCTGCG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998430 539 - 77216781 GTCAATGCGTAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACTAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGgcagaataaaggctgcatttgaagtcagaacacttaggatgagtccgtgcatttactattaacc-gggcatagaattctgaaaaactcatgttttgcttctgagcctcagtcttccatgtagt------caatggacataatg---------tcctgactacaaactctgtagctacagggttgAGCATAGTGTATATTGCCCACGTGAACAAATGAGCATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCGAGAGGGGCTCTTGGG-GCATTCTTGTTGACCCTGTACCTCCCGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTACG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911032 537 - 80997621 GTCAATGCGTAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACTAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGGCAGAATAAAGGCTGCATTTGAAGTCAGAACACTTAGGATGAGTCCGTGCATTTACTATTAACC-GCGCATAGAATTCTGAAAAACTCATGTTTTGCTTCTGAGCCT--GTCTTCCATGTAGT------CAATGGACATAATG---------TCCTGACTACAAACTCTGTAGCTACAGGGTTGAGCATAGTGTATATTGCCCACGTGAACAAATGAGCATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCGAGAGGGGCTCTTGGG-GCATTCCTGTTGACCCTGTACCTCCCGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTACG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967317 539 + 10377808 GTCAATGCGTAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACTAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGgcagaataaaggctgcatttgaagtcagaacacttaggatgagtccgtgcatttactattaacc-gggcatagaattctgaaaaactcatgttttgcttctgagcctcagtcttccatgtagt------caatggacataatg---------tcctgactacaaactctgtagctacagggttgAGCATAGTGTATATTGCCCACGTGAACAAATGAGCATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCGAGAGGGGCTCTTGGG-GCATTCCTGTTGACCCTGTACCTCCCGTGATGGAAGGCTGGAGAGTGAGCGCTCCCTACG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854407 539 - 8458610 GTCAATGCGTAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGCAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACTAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGgcagaataaaggctgcatttgaagtcagaacacttaggatgagtccctgcatttactattaacc-gggcatagaattctgaaaaactcatgttttgcttctgagcctcagtcttccatgtagt------caatggacataatg---------tcctgactacaaactctgtagctacagggttgAGCATAGTGTATATTGCCCACGTGAACAAATGAGCATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCGAGAGGGGCTCTTGGG-GCATTCCTGTTGACCCTGTACCTCCCATAATGGAAGGCTGGAGAGTGAGCGCTCCCTACG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64810729 539 + 75148670 GTCAATGCATAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACCAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGGCAGAATAAAGGctgcatttgaagtcagaacacttaggatgagtccgtgcatttactactaact-gggcatagaattctgaaaaactcatgttttgcttctgagcctcagtcttccatgtagt------caacaggcataatg---------tcctgactacaaactctgtagctacagggttgAGCATAGTGTATATTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCAAGGGGGGCTCTTGGG-GCATTCTTGTTGACCCTGTACCTCCCGTAACGGAAGGCTGGAGAGTGAGCGCTCCCTACG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2033896 539 + 4244037 GTCAATGCATAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGCAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACTAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGgcagaataaaggctgcatttgaagtcagaacacttaggatgagtccgtgcatttactattaacc-gggcatagaattctgaaaaactcatgttttgcttctgagcctcagtcttccatgtagt------caatggacacaatg---------tcctgactacaaactctgtagctacagggttgAGCATAGTGTATATTCCCCACGTGAACAAATGAGCATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCGAGAGGGGCTCTTGGG-GCATTCCTGTTGACCCTGTACCTCCCGTGATGGAAGGCTGGAGAGTGAGCGCTCCCTACG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061104 539 + 4569836 GTCAATGCATAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGCTGGAGGAATTGTCATTGAAGCTCCTTGGTAGCAAG-AGTTGGGCTTGAATGAATGGGAAAAGCAGGAAAACAATGAGAAATAACGAACCAAAGAGGAAAAGCAGCAAACTGAAGGTCCAG-AGTCTTA-TTTTTA-GCCA--TTCTTTTTTCCTGGCCAAATGACTCCCATTATGgcagaataaatgctgcatttgaagtcagaacacttagaatgagtccgtgcatttactattaacc-aggcatagaattctgaaaaactcatgttttgcttctgagcctcagtcttccatgtggt------caatgggcataatg---------tcctgactacAAATTCTGTAGCTACAGGGTTGAGCATAGTGTATATTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTAGGAAGGCAGGGCAGCCAAGAGGGGCTCTTGGG-GCATTCTTGTTGACCCTGTACCTCCCGTGATGGAAGGCTGGAGAGTGAGAGCTCCCTGCG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027042 539 - 159171411 GTCAAATCATAG------GTTGTTGCTAGTCTCACTGACTCTTGGCCAAATCCATTAGTTGGAAGAATTGTCATTGATGCTCCCTGGTAGCAAG-AGTTGTGCTTGAATAAATGCAAAGGGCAGGAAAACAATGGGAAATAATGAACTCAAGAGGTAAAGCAGTAAACTGAAGGTCAAG-AGGCTTATTTTTTG-GTCA--TTC-TTTTTTCTGGCCAAGTGACTCCTTTCATGGCCgaataaatgctgcatctgaagtcagaacacttaggatgagtcaatgcatttagtattaact-gggcgtagaattctgaacaacccacaaattgttct-gagcctcagtcttccatctggt------caatgcgcataatg---------tcctgactgcaaactctgtagctacagggttgAGCATAGTATATGTTGCCCACATGAACAAATGAGGATCCAAGGTTGTGTGGGAGGTGGGAACCCAGGGCAGCTGAGAGGGGCTCTTGGGGGAATTCTTGTTGACCCTGCACCTCCTGTGATGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753239 538 + 3513951 GTCAATGCATAA------ATTGTTGCTAGACTCACCAACTCTTGGCCAAATCTATCAGTTGGAAGAATTGTCACTGATGCTCTTTGCTAGCAAG-AGTTGTGCTTGAATAAATGCAAAGGGCA-GAAAACAATGGGAAATAATGAACCCAAGAGGTAAAGCAGTGAACGGAAGGTCCAG-AGGCCGA-TTTTTA-GTCA--TTC-TTTTTCCTGGCCAAGTGACTCTTTTTATGGCCGAATACATGctgcattagaagtcagaacacttaggataagtccacgcatttagtattaact-gggcatagaattctgaacaatccacatattgttttggagcctcagtcttccatctgtt------caatgcaaataatg---------tcctgactgcaaactccatagctacagggttgAGCATAGTGTATGTTGCCCACGTGAACAAATGAGGATCCAAGGTGGTGTGGGAGGTGGGAGCCCGGGGCAGCCGAGAGGGGCTCTTGGGGGAATTCTTGTTGACCCTGCACCTCCTGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1802718 507 + 1920343 GTCAATGCGTAG------GTTGTTGCTAGACTCACTGACTCTTGGCCAAATCCATCAGTCGGAAGAATTGTCACTGATGCTCCTGGGTAGCAAA-AGTTGTGCTTGAATAAATGCAA--------------------------------AAGAGGTAAAGCAGTAAACTGAAAGTCCAG-AGGCTTA-TTCTTA-GTCA--TTC-TTTTTCCTGGCCAAGTGACTCCTTTTATGGCCAaataaatgctgcatttgaagtcagaacacttaggatgagtccacgcatttagtattaagt-gggcatagaattctgaacaacccacatattgtttctgagcctcagtcttccatctggt------caatgcgcataatg---------tcctgactgcaaactctgtagctgcaggattgagcatagtgtatgtTGCCCACGTGAACAAATGAGGATCCAAGGTTGTGTGGGAGGTGGGAACCTGGGGCAGCCGAGAGGGGCTCTTGGGCTAATTCTTGTTGACCCTGCACCTCCTGTGACGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6913736 541 - 7032639 GTCAATGCATAG------GTTATTGCTAGACTCACTGACTCTTGGCCAAATCCGTCAGTTGGAAGAATTGTCACTGATGCTCCTTGGTAGCAAG-AGTTGTGCTTGAATAAATGCAAAGGGCAGGAAAACAATGGGAAATAATGAACCCAAGAGGTAAAGCAGTAAACTAAAGATCCAG-AGGCTTA-TTTTCA-GTCATTTTT-TTTTTCCTGGCCAAGTGACTCCTTTTATGgtcgaatgaatgctgcatttgaagtcagaacacttaggatgagtccatgcatttagtattaact-gggcatagaattctgaacaatccacatattgtttctgagcctcagtcttccatctgct------caatgtgcataatg---------tcctgactgcaaactctgtagctacagggttgAGCATAGTGTATGTTGCCCACGTGAACAAATGAGGATCCAAGGTTGTGTGGGAGGTGGGAACCCGGGGCAGCCGAGAGGGGCTCTTGGGGGAATTCTTGTTGACCCTGCACCTCCTGTGATGGAAGGCTGGAGAGTGAGCGCTCCCTGCG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22725230 520 + 28711273 GTCAGTATAGAGGGCACAGTTACTGACAGACTCACTGACCCTTAGCT-AACCTATCGGTAG--------------GAAGCTCCTTGGTGTCAAG-GTTATCACTAAACAGAACGAGACAGGCAGAAACACAATGGGAAATAATTGACTC-CGGGGTGAAGCAGCTCATTG-------AG-GGGCTTA-GCCTTA-GTCA--TTC-TTTTTCctggctgagtgacttctgttatagcagaatgtacactgcaggaagagtcagaacactgaggtcgagtccatgactctgctgtcaacc-gggcacgtagttctggacaatgcccctgtccttcttcaggctcagtctcccatctAGT------CCACGGGTAGGGTGATTCTCTTATCCTGATCAAGAGCTCTGTAGCTACAGGCTTAAAAACACAGAATTTTGATCAAGTG-ACAAATGAGGACCCAAGGTGGTAAGGG----------CCAGGGCAGTGGACAGAGGCTCCTGTGGGCATCCTGGCTGACCCCAAGCCTCTCGTGATCGAAGGCACGAGAGTGAACTCGCCCTGCG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21341787 538 + 61074082 TTCAGTGCATTG------ATTGTTGACAGATGTGCTGACTCTTGGCCAAATTTATCAGTGGGAGGAATTGTCACTGTAGGTCCTTGGT----AG-AGTTGCAATTAAATAAATGAGGAAGGCATAAAAATCATGTGAAATAATCAATCCATGGGGTAAACCAACAAACTGTAGGTCCAGAAGGCTTA-TTTTAAGGCTA--TTC-TTTTTCCTGGCTAAATGACTCTT-Ttatagcagaatgaacacttcat-tgaagtttgaatactttggttgaatccatgtatttactattaactaaggtatacaatcctgcataatccatttattctttttgagcctcagtttcccattcagtcccatccaatgggcataatgatatttg--tcctgaccatgagctctgtag-tacaggatctaacatggtggatgtTGATTAATTGAAGAAATGAGGATCCAA---------GTAGGTGGGAACAAGGGAAGGCTGAGAGAGGCTATCTTT-GGCATCCTACTAACCTTGCATCTCCTGTGCTGGAAGACATGAGAGTGAGCTCTCCCTGCG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 312760 518 - 852752 ---CTGACATAG------GTCA--GACAGATGTATTGACCATTGGCCAGATCCATCAGAAGGAAAAGTAGTCACTGGAGCTCCTTGATATCAAGAAAATGCAAACTAATGAATGGAAGATACAGGAAAACAATGTAAAATGATTAATCCAAGGGGTAAAGCAGCAAACTGAAGGACCAGAAGGCTTA-GTGTTA-GCCA--ATC-TTTTTCTGGGCTGTTTAACTCCTATtacggcagaatgaatactgcgttttaagtccaaacacttaggtggagtccatgcatatactatttacc-aggcatatga-cctggacaatccatttatttttcctgagtctcagtttcttgactatt------caatgataat--TG---------TCCTGACGATGAGTTAAATAGCC-------------CGGTGGCTGTTGGCCAATTGACCAAAGGAGGATCCAAGGTGATGATGGAGGTGAAAACCTGGGGCAGCTGAG-GGGAATCTTGGCAGTGTTATTTTTGACTCTGTATCTCCCATGGT-GAAGGAACAAGAATGAGCTCACTCTGCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2889952 224 + 8555354 I e micMur3.chr16 35841104 505 - 65901067 I a score=579354.000000 s hg38.chr17_GL383564v2_alt 10025 38 + 133151 CCAGCTGGTGGAGGCGGACAAGTGCGGGACGCAGAAGC s panTro5.chr17 16203904 38 + 83181570 CCAGCTGGTGGAGGCGGACAAGTGCGGGACGCAGAAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111261 38 + 83442489 CCAGCTGGTGGAGGCGGACAAGTGCGGGACGCAGAAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946370 38 + 4267968 CCAGCTGGTGGAGGCGGACAAGTGCGGGACACAGAAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924741 38 - 2193130 CCAGCTGGTGGAGGCGGACAAGTGTGGGACGCAGAAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29998969 38 - 77216781 CCAGCTGGTAGAGGCGGACCAGTGTGGGACGCAGAAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911569 38 - 80997621 CCAGCTGGTAGAGGCGGACCAGTGTGGGACGCAGAAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967856 38 + 10377808 CCAGCTGGTAGAGGCGGACCAGTGTGGGACGCAGAAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854946 38 - 8458610 CCAGCTGGTAGAGGCGGACCAGTGTGGGACGCAGAAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811268 38 + 75148670 CCAGCTGGTAGAGGCGGACCAGTGTGGGACGCAGAAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034435 38 + 4244037 CCAGCTGGTAGAGGCGGACCAGTGTGGGACGCAGAAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061643 38 + 4569836 CCAGCTGGTAGAGGCGGACATGTGCGGGACGCAGAAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027581 38 - 159171411 TCAGCTGGTGGAGGCGGACATGTGTGGAATGCAGAAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753777 38 + 3513951 TCAGCTGGTGGAGGCGGACATGTGTGGGATGCAGAAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803225 38 + 1920343 TCAGCTGGTGGAGGCGGACATGTGTGGGATGCAGAAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914277 38 - 7032639 TCAGCTGGTGGAGGCGGATATGTGTGGGATGCAGAAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841609 38 - 65901067 CCAGCTGGTGGAGGCGGACATGTGTGGGATGCAGAAGC i micMur3.chr16 I 505 C 0 s otoGar3.GL873537 22725750 38 + 28711273 CCAGCTGGTGGAGGCAGATATGTGTGGGACCCAGAAGC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21342325 38 + 61074082 CCAGGTGGTAGAGGCGGACATGTGTGGGATGCACAAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313278 38 - 852752 CCAGCTGGTGGAGATGGACATGTGCAGGATGCACAAAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2889952 224 + 8555354 I a score=225440.000000 s hg38.chr17_GL383564v2_alt 10063 14 + 133151 TCCTGGATGACGCG s panTro5.chr17 16203942 14 + 83181570 TCCTGGATGACGCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111299 14 + 83442489 TCCTGGATGACGCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946408 14 + 4267968 TCCTGGATGACGCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924779 14 - 2193130 TCCTGGATGACGCG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999007 14 - 77216781 TCCTGGATGACGCG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911607 14 - 80997621 TCCTGGATGACGCG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967894 14 + 10377808 TCCTGGATGACGCG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854984 14 - 8458610 TCCTGGATGACGCG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811306 14 + 75148670 TCCTGGATGACGCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034473 14 + 4244037 TCCTGGATGACGCG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061681 14 + 4569836 TCCTGGATGATGCG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027619 14 - 159171411 TCCTGGATGATGCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753815 14 + 3513951 TCCTTGATGATGCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803263 14 + 1920343 TCCTTGATGATGCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914315 14 - 7032639 TCCTGGATGATGCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841647 14 - 65901067 TCCTGGACGACGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2890176 14 + 8555354 TCCTGGACGACCTG i proCoq1.NW_012135969v1 I 224 I 47858 s otoGar3.GL873537 22725788 14 + 28711273 TCCTGGATGATGCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21342363 14 + 61074082 TCATGGATGACCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313316 14 - 852752 TCCTGGATGACCTG i dasNov3.JH570468 C 0 C 0 a score=1497473.000000 s hg38.chr17_GL383564v2_alt 10077 83 + 133151 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCTCCCTCAAGAGCAACCACGAGCAGGT s panTro5.chr17 16203956 83 + 83181570 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCACCTCTCCCTCAAGAGCAACCACGAGCAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111313 83 + 83442489 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCACCTCTCCCTCAAGAGCAACCACGAGCAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946422 83 + 4267968 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCTCCCTCAAGAGCAACCACGAGCAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924793 83 - 2193130 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCTCCCTCAAGAGCAACCACGAGCAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999021 83 - 77216781 ACCCTGGCCAAGGCTGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTGTCCCTCAAGAGCAACCATGAGCAGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911621 83 - 80997621 ACCCTGGCCAAGGCTGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTGTCCCTCAAGAGCAACCATGAGCAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967908 83 + 10377808 ACCCTGGCCAAGGCTGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTGTCCCTCAAGAGCAACCATGAGCAGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1854998 83 - 8458610 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTGTCCCTCAAGAGCAACCATGAGCAGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811320 83 + 75148670 ACCCTGGCCAAGGCTGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTGTCCCTCAAGAGCAACCATGAGCAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034487 83 + 4244037 ACCCTGGCCAAGGCTGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTGTCCCTCAAGAGCAACCATGAGCAGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061695 83 + 4569836 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAAGAGGAGCAGCTCTCCCTCAAGAGCAACCATGAGCAGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027633 83 - 159171411 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCTCTCTCAAGAGCAACCATGAGCAGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753829 83 + 3513951 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCTCTCTCAAGAGCAACCATGAGCAGGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803277 83 + 1920343 ACCCTGGCCAAGGCCGATCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCTCTCTCAAGAGCAACCATGAGCAGGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914329 83 - 7032639 ACCCTGGCCAAGGCCGACCTGGAGGCCCAGCAAGAGTCCCTGAAGGAGGAGCAGCTCTCTCTCAAGAGCAACCATGAGCAGGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841661 80 - 65901067 -ACCTGGCCAAGGCCGACCTGGAGG-CCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCGCCCTCAAG-AGCACCACGAGCAGGT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2938048 83 + 8555354 ACCCTGGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCTGCTCTGTCTCAAGAAGAACCATGAACAGGT i proCoq1.NW_012135969v1 I 47858 I 300 s otoGar3.GL873537 22725802 83 + 28711273 ACCCTGGCCAAGTCCGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCAGCTCGCCCTCAAGAGCAACCATGAGCAGGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21342377 83 + 61074082 AGCCTGGCCAAGGCTGACCTGGAGGCCCAGCAGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGGAACCACGAACAGGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313330 83 - 852752 AGCCTGGCCAAGGCTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAGGAGCAGCTCTGCCTCAAGAGCAACCATGAGCAGAT i dasNov3.JH570468 C 0 C 0 a score=580356.000000 s hg38.chr17_GL383564v2_alt 10160 49 + 133151 GTGGCCCTGGCTGCTC-AGACTCC----TG--GGGAGGG----CGCTGGGCAGACAGGGG s panTro5.chr17 16204039 49 + 83181570 GTGGCCCTGGCTGCTC-AGACTCC----TG--GAGAGGG----CGCTGGGCAGACAGGGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111396 49 + 83442489 GTGGCCCTGGCTGCTC-AGACTCC----TG--GAGAGGG----CGCTGGGCAGACAGGGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946505 49 + 4267968 GTGGCCCTGGCTGCTC-AGACTCC----TG--GGGAGGG----CACTGGGCAGACAGGGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924876 49 - 2193130 GTGGCCCTGGCTGCTC-AGACTCC----TG--GGGAGGG----TGCTGGGCAGACAGGGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999104 49 - 77216781 GTGGCCCTGGCCGCTC-AGACTCC----CG--GGGAGGG----TGCTGGGCAGACAGGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911704 49 - 80997621 GTGGCCCTGGCCGCTC-AGACTCC----CG--GGGAGGG----TGCTGGGCAGACAGGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1967991 49 + 10377808 GTGGCCCTGGCCGCTC-AGACTCC----CG--GGGAGGG----TGCTGGGCAGACAGGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855081 49 - 8458610 GTGGCCCTGGCCGCTC-AGACTCC----CG--GGGAGGG----TGCTGGGCAGACAGGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811403 49 + 75148670 GTGGCCCTGGCCGCTC-AGACACC----CG--GGGAAGG----CGCTGGGCAGACAGGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034570 49 + 4244037 GTGGCCCTGGCCGCTC-AGACTCC----TG--GGGAGGG----CGCTGGGCAGACAGGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061778 49 + 4569836 GTGGCCCTGGCCGCTC-AGACTCC----CG--GGGAGGG----TGCTGGTCAGACAGGGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027716 49 - 159171411 ACAGCCCTGGCCGCGC-AGATACC----CG--GGGAGGG----CGCTGAGCAGATAGGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753912 49 + 3513951 ACGGCCCTGGCCGCTC-AGACTCC----CG--GGGAGGG----CGCTGGGTAGATAGGGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803360 57 + 1920343 GTGGCCCTGGCCGCTT-AGACTCCTGGTCG--GGGGGGGGCAATGCTGGGCAGATAGGGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914412 52 - 7032639 GTGGCCCTGGCCGCTC-AGACTCC----CG--GTGGGGGGCAGTGCTGGGCAGAT-GGGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841741 50 - 65901067 GCGGTCCCA-GCACAC-AGACTCA----TGGCGGGGGCG----GGCTGGGCAGACAAGGG i micMur3.chr16 C 0 I 52 s otoGar3.GL873537 22725885 48 + 28711273 ATGGCCACAGGTGCCC-AGACCCC----T---GTGGGGA----GGGTGGGCAGACAGGCA i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21342460 49 + 61074082 GTGGTCCTGGGGATGC-AGACCTA----TG--GGGAAGG----CACTGGCCAGGAAAGGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313413 51 - 852752 CTGGTACTGGAAGCTCGAGATTCA----TGG-GGGAGAG----TGTAGGGCAGACAAGGG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938131 300 + 8555354 I a score=671584.000000 s hg38.chr17_GL383564v2_alt 10209 59 + 133151 AGCTCC-CCG------GCCCTGGGGCTCTCAGAGCATTGCCTGGGCTCAGCTGGCCTAAGGATGCA s panTro5.chr17 16204088 59 + 83181570 AGCTCC-CCG------GCCCTGGGGCTCTCAGAGCATTGCCTGGGCTCAGCTGGCCTAAGGATGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111445 59 + 83442489 AGCTCC-CCG------GCCCTGGGGCTCTCAGAGCATTGCCTGGGCTCAGCTGGCCTAAGGATGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946554 59 + 4267968 AGCTCC-CCG------GCCCTGGGGCTCTCAGAGCATTGCCTGGGCTCAGCTGGCCTAAGGATGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924925 59 - 2193130 AGCTCC-TTG------GCCCCAGGGCTCTCGGAGCATTGCCTGGGTTCAGCTGGCATCAGGATGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999153 59 - 77216781 AGCTCC-CTG------GCCCCGGGGCTCTCAGAGCATTGTCTGGGCTCAGCTGGCATCAGGATGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911753 59 - 80997621 AGCTCC-CTG------GCCCCGGGGCTCTCAGAGCATTGTCTGGGCTCAGCTGGCATCAGGATGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968040 59 + 10377808 AGCTCC-CTG------GCCCCGGGGCTCTCAGAGCATTGTCTGGGCTCAGCTGGCATCAGGATGCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855130 59 - 8458610 AGCTCC-CTG------GCCCCGGGGCTCTCAGAGCATTGTCTGGGCTCAGCTGGCATCAGGATGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811452 59 + 75148670 AGCTCC-TTG------GCCCCGGGGCTCTCAGAGCATTGCCTGGGCTCAGCTGGCATCAGGATGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034619 59 + 4244037 AGCTCC-CTG------GCCCCAGGGCTCTCAGAGCATTGTCTGGGCTCAGCTGGCATCAGGATGCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061827 59 + 4569836 AGCTCC-CTG------GCCCCGGGGCTCTCAGAGTATTGTCTGGGCTCAGCTGGCATCAGGATGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027765 59 - 159171411 AGCTCC-CTG------GCCCTGGGGCTCTCAGAGCAGAGCCTGGGCTCAGCTGGCATCGGCATGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1753961 59 + 3513951 AGCTCC-CTG------GCCCTGGGGCTCTCAGGGCAGAGCCTGGGCTCCGCTGGCGTCGGCACGCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803417 59 + 1920343 AGCTCC-CTG------GCCCTGGGGCTCTCAGAGCAGAGCCTGGGCTCAGCTGGCATCGGCATGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914464 59 - 7032639 AGCTTC-CTG------GCCCTGGGGCTCTCAGAGCAAAGCCTGGGCTCAGCTGGCATCGGCATGCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22725934 65 + 28711273 TCCCCC-CTGCCCTCTGCCCCACAGTGCTCAGATGGGAGCCTGGGCCCAGTTGGCTTCAGGATGGG i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21342509 60 + 61074082 AGCACTGCTC------ACCCTGGGGCTCTAGGGTTAAACCTGGGGTTCACTTGGCATCAGGATGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313464 64 - 852752 TGTCCC-CTG-CCCCTGCCCAGTGGCTTTTAGATTAGAACCTGGGTCCAGACGGCATCAGGAGAAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938131 300 + 8555354 I e micMur3.chr16 35841791 52 - 65901067 I a score=2914532.000000 s hg38.chr17_GL383564v2_alt 10268 240 + 133151 GGGCTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCATG-AGGAAGGTGTCCAGGTGGGCTCTCCCAAATGCACTCTGGACAAGA-CTTTCCCATTTGCTTATGTGTGGGA-CTCCCCTCCTACTGCTTGCCAGGGACGGAGTCCTGGTGCTGTCTGCTCCATCAAAGGCCGTTTCCTTACGCAGGCTGTCTATCGCTTCC--ATTTCTGCAGGAAGTAA s panTro5.chr17 16204147 242 + 83181570 GGGCTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCTGCGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCATG-AGGAAGGTGTCCAGGTGGGCTCTCCCAAATGCACTCTGGGCAAGA-CTTTCCCATTTGCTTATGTGTGGGA-CTCCCCTCCTACTGCTTGCCAGGGACGGAGTCCTGGTGCTGTCTGCTCCATCAAAGGCCGTTTCCTCACGCAGGCTGTCTATCGCTTCCTCATTTCTGCAGGAAGTAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111504 242 + 83442489 GGGCTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCTGCGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCATG-AGGAAGGTGTCCAGGTGGGCTCTCCCAAATGCACTCTGGGCAAGA-CTTTCCCATTTGCTTATGTGTGGGA-CTCCCCTCCTACTGCTTGCCAGGGACGGAGTCCTGGTGCTGTCTGCTCCATCAAAGGCCGTTTCCTCACGCAGGCTGTCTATCGCTTCCTCATTTCTGCAGGAAGTAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946613 242 + 4267968 GGGCTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCCGTGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCATG-AGGAAGGTGTCCAGGTGGGCTCTCCCAAATGCACTCTGGGCAAGA-CTTTCCCATTTGCTTATGTGTGGGA-CTCCCCTCCTACTGCTTGCCAGGGACGGAGTTCTGGTGCTGTCTGCTCCATCAAAGGCTGTTTCCTCATGCAGGCTGTCTATCGCTTCCCCGTTTCTGCAGGAAGTAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1924984 242 - 2193130 GGACTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCATG-AGGAAGGTGTCCAGGTGGGCTCTCCCGAATGCACTCTGGGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CTCCCCTCCTACTGCTTGCCAGGGATGGGGTCCTGGTGCTGTCTGCTCCATCAAAGGCCGTTTCCTCATGCAGGCTGTCTGTCCCTTCCTCATTTCTGCAGGAAGTAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999212 241 - 77216781 GGACTGAGGGGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCACG-AGTAAGGTGTCCAGGTGGGCTCTCCCCACTGCACTCTCAGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CTCCCCTCCCACTGCTTG-CAGGGTCAGGGTCCTGGTGCTGTCTGCTCCATCAAAGGTCTTCTCCTCACACAGGCTGTCTGTCCCTTCCTCCTTTCTGCAGGAAGTAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27911812 241 - 80997621 GGACTGAGGGGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCACG-AGGAAGGTGTCCAGGTGGGCTCTCCCCACTGCACTCTCAGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CTCCCCTCCCACTGCTTG-CAGGGTCAGGGTCCTGGTGCTGTCTGCTCCATCAAAGGTCCTCTCCTCACACAGGCTGTCTGTCCCTTCCTCCTTTCTGCAGGAAGTAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968099 234 + 10377808 GGGCTGAGGTGGGTCTGAGGGTGCAGTGGTCCTCT-------GTGC-------------------------AG-ACTTGC-------------CTTGGGCACG-AGGAAGGTGTCCAGGTGGGCTCTCCCCACTGCACTCTCAGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CTCCCCTCCTACTGCTTG-CAGGGTCAGGGTCCTGGTGCTGTCTGCTCCATCAAAGGTCCTCTCCTCACACAGGCTGTCTGTCCCTTCCTCCTTTCTGCAGGAAGTAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855189 241 - 8458610 GGACTGAGGGGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGT-------------------------AG-ACTTGC-------------CTTGGGCACG-AGGAAGGTGTCCAGGTGGGTTCTCCCCACTGCACTCTCAGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CCCCCCTCCTACTGCTTG-CAGGGTCAGGGTCCTGGTGCTGTCTGCTCCATCAAAGGTCCCCTCCTCACACAGGCTGTCTGTCCCTTCCTCCTTTCTGCAGGAAGTAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811511 241 + 75148670 GGACTGAGGGGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGC-------------------------AG-ACTTGC-------------CTTGGGCATG-AGGAAGGTGTCCAGGTGGGCTCTCCCCACTGCACTCTCAGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CTCCCCTCCTACTGTTTG-CAGGGGCGGGGTCCTGGTGCTGTCTGCTCCATCAAAGGCCCTCTCCTCATGCAGGCTGTCTGTCTCTTCCTCCTTTCTGCAGGAAGTAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034678 241 + 4244037 GGGCTGAGGGGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTGT-------------------------AG-ATTTGC-------------CTTGGGCACG-AGGAAGGTGTCCAGGTGGGCTCTCCCCACTGCACTCTGGGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGA-CTCCCCTCCTACTGCTTG-CAGGGTCAGGGTCCTGGTGCTGTCTGCTCCATCAAAGGTCCTCTCTTCACACAGGCTGTCTGTCCCTTCCTCCTTTCTGCAGGAAGTAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2061886 241 + 4569836 GGACTGAGGGGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAAGTAC-------------------------AG-ACTTGC-------------CTTGGGCACA-CGGAAGGTGTCCAGGTGGGCTCTCCCCACTGCGCTCTCAGCAAGA-CTCTCCCATTTGCTTGTGTGTGAGA-CTCCCCTCCTACTGTTGG-CAGGGGCGGGGTCCTGGTGCTGTCTGCTCCATCAAAGGCCCTTTCCTCATGCAGGCTATCTGTCCCTTCCTCCTTTCTGCAGGAAGTAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46027824 242 - 159171411 GGGCTGAGGTGGGTCTGAGGGTTCAGAGGGCCTCTGTGGAAGGTGC-------------------------AG-ACTTGC-------------CTTGGGCACA-AGGAAGGCGTCCAGGTGGGCTCTCCCAACTGCACTCTGGGCAAGA-CTTTCCCATTTGCTTGTGTATGAGG-CTCCCCTCCTACTGCTTGCCAGGGGTGGGGTCCTGGTGCTGTCTGCTTCATCAAAGGCCCTCTCCTCACACAAACTGTCTGTGCCTTCCTCCTTTCTGCAGGAAGTAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754020 241 + 3513951 GGGCTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAGGTGC-------------------------AG-ACTTGC-------------CTT-GGCACA-AGGAAGGTGTCCAGGTGGGCTCTCCCGACTGCACCCTGGGCAGGA-CTTTCCCATTTGCTTGTGTATGGGG-CTCCCCTCCTACTGCTTGCCAGGGGTGGGGTCCTGGTGCCGTCTGCTCCATCGAAGGCCCTCTCCTCACGCACGCTGGCTGTCCCTTCCTCCCTTCTGCAGGAAGTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803476 242 + 1920343 GGGCTGAGGTTGGTCTGAGGGTCCAGAAGGCCTCTCTGGAAGGTGC-------------------------AG-ACTTGC-------------CTTGGGCACG-AGGAAGGTGTCCAGGTGGGCTCTCCCGACTGCACTCTGGGCAAGA-CTTTCCCATTTGCTTGTGTATGGGG-CTCCCCTCCTACTGCTTGCCAGGAGTGGGGACCTGGTGCTGTCTGCTCCATCAAAGGCCCTCTCCTCACGCAGGCTGTCTGTTCCTTCCTCCCTTCTGCAGGAAGTAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914523 242 - 7032639 GGGCTGAGGTGGGTCTGAGGGTCCAGAGGGCCTCTGTGGAAGGTGC-------------------------AG-ACGTGC-------------CTTGGGCACA-AGGAAGGTGTCCAGGTGGGCTCTCCCGACTGCACTCTGGGCAAGA-CTTTCCCATTTGCTTGTGTGTGGGG-CTCCCCTCCTACTGCTTGCCAGGGGTGGGGTCCTGGTGCTGTCTGCTCCATGAAAGGCCCTCTCCTCACGCAGGCTGTCTGTCCCTTCCTCCCTTCTGCAGGAAGTAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35841843 239 - 65901067 AGGCTGGTGTGGGCCTGAGGGTCCAGCCGGCCTCTGCGGAACGTGG-------------------------AGCACGTGC-------------CTCGTGCATG-AGGAAGTTCTTCACGAGGGCTCTTCCCACGGGGCCCTGGGCGAGA-CTTTGGCGTGTGCTTGCATGTGGGG-CTCCCCTCCTGCTGCTCGTCAGGGGCGGGGGCCGGGTGCTGTCTGCTCTGCCAAAGGCCCTTCCCCCACTCAGG-TGTCTGTCCCTTCTGTCCCT---CAGGAAGTGA i micMur3.chr16 I 52 C 0 s otoGar3.GL873537 22725999 234 + 28711273 GGGTTGGTGTGGGTCTGAGGGCCCAGATGGCCTCTGAGGCATGTGG-------------------------GGGTCTTGC-------------CTTGCACATG-AAGAAGGTCTCCAAATAGGCGCCCCCCACAGGGCCCTGGGCAGGA-TTTTCCCATTTGCTTGCGTGTGGGG-CT-CCCTCCTGCCGCTTGTCAGGGGCGGGG--CCGGCTCTGTCTGCTCTGTCAGAGGCATTGCCTT--GTCAAG-TCACCATCCCTTCTGTCCCT---TAGGAAGTGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21342569 264 + 61074082 GGGTTGATCCAGGTCTGGCAGT-CAGACTGATTGTGTGGGATGTGGCAGAGGGGGAGTTTCTTGTCTGTAAAG-ATTTGC-------------CTTGTCTATATAGGAAGGTGTCCAAATGGATTCTCCCCG-TGGACCATGGGCAAGACCTCTCATGTCAGTGCATGAGTGGGGTCGCCTCTCATGCTGCTTGTCTGGGGAGGGGTTCAGGTGTCATCTGCTCTGTCAAAAAGCCTTTCCTCAATTAGG--GTTGGATCTTTCT--GTTCCTACAGGAAGTGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313528 209 - 852752 GGGCTGATCTGGATCTGAGGGTCCAGACTGGCTCTGTGGAATGTGGCAGAGTG------------------GG-AGCTGCTTCTTTCCACAGACTTGAGAATTTAGGAAGTTTTCCAAATGGGCTCTTCCCATTGGACTCTGGGC-----CT----------------------G--------------------CCAGGAAGGGATCC-----CTGTCTACTCTGTCCAAAGCCCTTTTCTCACTTTGGGTGTCAGTCCCT----CTGCCCTGCAGGAAGTCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938131 300 + 8555354 I a score=2650009.000000 s hg38.chr17_GL383564v2_alt 10508 159 + 133151 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGTTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGTTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCACCAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGA s panTro5.chr17 16204389 159 + 83181570 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGTTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGTTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111746 159 + 83442489 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGTTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGTTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3946855 158 + 4267968 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGTTCC-GATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGTTGGGGGACATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925226 159 - 2193130 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTTCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGTTGGAGACCAACCGCCAGGACGTGGAACAGTGGTTCCAAGCCCAGGTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999453 159 - 77216781 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTAGAACAGTGGTTCCAAGCCCAGGTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912053 159 - 80997621 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTAGAACAGTGGTTCCAAGCCCAGGTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968333 159 + 10377808 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTAGAACAGTGGTTCCAAGCCCAGGTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855430 159 - 8458610 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTATGAGGCCATGCTGGAGACCAACCGCCAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811752 159 + 75148670 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GACATTGAGCCTACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTATGAGGCCATGGTGGAGACCAACCGCCAGGATTTAGAACAGTGGTTCCAAGCCCAGGTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2034919 159 + 4244037 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTATGAGGCCATGCTGGAGACCAACCGCCAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062127 159 + 4569836 AGATTCTGAGGAGTC-AGCTGGGGGAGAAGCTCCGGATCGAGCTG-GATATTGAGCCCACCATTGACCTGAAC-AGGGTGCTGGGGGAGATGCGGGCTCAGTATGAGGCCATGGTGGAGACCAACCGCCAAGATGTGGAACAGTGGTTCCAAGCCCAGGTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028066 159 - 159171411 AGACTCTGAGGAGTC-AGCTAGGGGACAAGATCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAGC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGCGGAGCAGTGGTTCCAAGCCCAGGTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754261 159 + 3513951 AGACTCTGAGGAGTC-AGCTGGGGGACAAGATCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGGGC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGACGCGGAGCAGTGGTTCCAAGCCCAGGTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803718 159 + 1920343 AGACTCTGAGGAGTC-AGCTGGGGGACAAGATGCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGGGC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGCGGAGCAGTGGTTCCAAGCCCAGGTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914765 159 - 7032639 AGACTCTGAGGAGTC-AGCTGGGGGACAAGATCCGGATCGAGCTG-GACATTGAGCCCACCATTGACCTGAGC-AGGGTGCTGGGGGAGATGCGGGCTCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGACGCGGAGCAGTGGTTCCAAGCCCAGGTGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842082 157 - 65901067 AGATTCTGAGGAGTC-AGCTGGGAGACAAGATCCGGATTGAGCTGTGACACGGAGCCCACGGTGGACTTCAGC-AGGGTGCTGGGGGAGATGAGGTG-CAGTACGAGCCGATGGTGGAGA-CAACCGCCAGGACGTGGAGCAGT-GTTCCAAGCCCAGGTGA i micMur3.chr16 C 0 I 28 s proCoq1.NW_012135969v1 2938431 159 + 8555354 AGATTCTGAGGTGTC-AGCTGGGGGACAAGCTCCGGATTGAGCTG-GACACGGAGTCCCCCACAGACCTGAGC-AGGGTGCTGGGGGAGATGCGGTGCCAGTACGAGGCCATGGTGGAGACCAACCGCCAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGA i proCoq1.NW_012135969v1 I 300 C 0 s otoGar3.GL873537 22726233 159 + 28711273 AGATTCTGAGGAGTC-AGCTGGGCGACAAGCTCCGGATTGAGCTG-GACACTGAGCCCCCCGTGGACCTGAGC-CGGGTGCTGGGGGAGATGAGATGTCAGTACGAGACCATGGTGGAGACCAACCGGCAGGACGTGGAGCAGTGGTTCCAGGCCCAGGTGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21342833 159 + 61074082 GCATTCTGAGGGGCC-AGCTGGGGGACAAGCTCCAGATTAAGCTG-GATGTTGAGCCCACCGTGGACCTGGGC-AGAGTGCTGGAGGACATGAGGTGCCACTATGAGGCCATGGTGCAGACCAGCCGCAATGATGTGGAGGAGTGGTTCCAAGATCAGGTGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313737 151 - 852752 ACATTCTGATGGGTCAAGCT----------TTCTGGATTGAGCTG-GATTCTGAACCTGCTGTGGACCTGAACAAGGATGCCAGGGGACATGCAGTACGAGTACGAGGCCATGGTGGAGATCAAATGCCAGGATGTGGAGCAGTGGTTCCAAGAGCAGGTGA i dasNov3.JH570468 C 0 C 0 a score=57532.000000 s hg38.chr17_GL383564v2_alt 10667 22 + 133151 GT-GGG----G-GTTA------CAGAGCCAGGGA s panTro5.chr17 16204548 22 + 83181570 GC-GGC----G-GTTA------CAGAGCCAGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111905 22 + 83442489 GC-GGC----G-GTTA------CAGAGCCAGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947013 22 + 4267968 GC-GGG----G-GTTA------CAGAGCCAGGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925385 23 - 2193130 GCAGGG----G-GGTA------CAGAGCCAGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999612 26 - 77216781 AC-GAGGGGTG-GGTA------CAGAGCTGGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912212 26 - 80997621 AC-GAGGGGTG-GGTA------CAGAGCTGGGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968492 25 + 10377808 AC-GAGGGGTG-GGTA------CAGAACT-GGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855589 25 - 8458610 AT-GGGGGG-G-GGTA------CAGAGCTGGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811911 24 + 75148670 AT-GGGGG--G-AGTA------CAGAGCTGGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035078 24 + 4244037 AC-GGAGG--A-GGTA------CAGAAGCAGGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062286 27 + 4569836 AT-GGGGGGGGCGGTA------CAGAGCTGGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028225 22 - 159171411 GC-AGG----T-GGTA------CAGAGCCGGGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754420 21 + 3513951 GC-AGG------GGTA------CAGAGCCGGGGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803877 22 + 1920343 GC-AGG----G-GGTA------CAGAGCCAGGGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914924 22 - 7032639 GC-AGG----G-GGTA------CAGAGCTGCGGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2938590 22 + 8555354 ---GGGCG--G-GGTG------CCCAGCAGCAGG i proCoq1.NW_012135969v1 C 0 I 21 s otoGar3.GL873537 22726392 21 + 28711273 ---GGGCG--G-ACTA------CTCAGCAGGGG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21342992 23 + 61074082 ----------G-GGTGCTGCCTCGGTGCAGGGAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 313888 5 - 852752 -------------AAA------CA---------- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35842239 28 - 65901067 I a score=106652.000000 s hg38.chr17_GL383564v2_alt 10689 10 + 133151 GTACCTGGCC s panTro5.chr17 16204570 10 + 83181570 GTACCTGGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111927 10 + 83442489 GTACCTGGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947035 10 + 4267968 GTACCTGGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925408 10 - 2193130 GTATCTGGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999638 10 - 77216781 GTACCTGGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912238 10 - 80997621 GTACCTGGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968517 10 + 10377808 GTACCTGGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855614 10 - 8458610 GTACCTGGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811935 10 + 75148670 GTACCTGGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035102 10 + 4244037 GTACCTGGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062313 10 + 4569836 GTACCTGGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028247 10 - 159171411 ACATCTGGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754441 9 + 3513951 -CATCCGGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803899 9 + 1920343 -CATCTGGCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914946 10 - 7032639 GCATCTGGCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22726413 10 + 28711273 GGACCTGCTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343015 10 + 61074082 GGACCCGGGC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 313893 6 - 852752 ----CTGGCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938612 21 + 8555354 I e micMur3.chr16 35842239 28 - 65901067 I a score=143695.000000 s hg38.chr17_GL383564v2_alt 10699 10 + 133151 TCCATCTGAG-- s panTro5.chr17 16204580 10 + 83181570 TCCATCTAGG-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111937 10 + 83442489 TCCATCTAGG-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947045 10 + 4267968 TCCATCTGGG-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925418 10 - 2193130 TCTATCTGGG-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999648 10 - 77216781 TCCATCTGGG-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912248 10 - 80997621 TCCATCTGGG-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968527 10 + 10377808 TCCATCTGGG-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855624 10 - 8458610 TCCATCTGGG-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811945 10 + 75148670 TCCATCTGGG-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035112 10 + 4244037 TCCATCTGGG-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062323 10 + 4569836 TCCTTCTGGG-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028257 10 - 159171411 TCCATCTGGG-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754450 10 + 3513951 TCCATCTGGG-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803908 10 + 1920343 TCCATCTGGG-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914956 10 - 7032639 TCCATCTGGG-- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842267 10 - 65901067 TCCATCTGGG-- i micMur3.chr16 I 28 C 0 s otoGar3.GL873537 22726423 10 + 28711273 TCCATCTGGG-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343026 10 + 61074082 TCCACACGGG-- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 313899 12 - 852752 TCCATTCTGGAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938612 21 + 8555354 I a score=272146.000000 s hg38.chr17_GL383564v2_alt 10709 21 + 133151 CAGGGAGGTGACT-GTGTTTCT s panTro5.chr17 16204590 21 + 83181570 CAGGGAGGTGACT-GTGTTTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111947 21 + 83442489 CAGGGAGGTGACT-GTGTTTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947055 21 + 4267968 CAGGGAGGTGACT-GTGTTTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925428 21 - 2193130 CAGGGAGGTGACC-GTGTTTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999658 21 - 77216781 CAGGGAGGTGACT-ATGTCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912258 21 - 80997621 CAGGGAGGTGACT-ATGTCTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968537 21 + 10377808 CAGGGAGGTGACT-ATGTCTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855634 21 - 8458610 CAGGGAGGTGACT-ATGTCTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811955 21 + 75148670 CAGGGAGGTGACT-ATGTCTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035122 21 + 4244037 CAGGGAGGTGACT-ATGTCTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062333 21 + 4569836 CAGGGAGGTGACT-ATGTCTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028267 21 - 159171411 CAGGGAGGTGACT-GTGCCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754460 21 + 3513951 CAGGGAGGTGACT-GTGCCTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803918 21 + 1920343 CAGGGAGGTGACT-GTGCGTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914966 21 - 7032639 CAGGGAGGTGACT-GTGCCTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842277 20 - 65901067 CAGGGAG-TGACC-GTGTCTGT i micMur3.chr16 C 0 I 7 s proCoq1.NW_012135969v1 2938633 21 + 8555354 CAGTGAGCTGACT-GTGTCTTT i proCoq1.NW_012135969v1 I 21 T 14694 s otoGar3.GL873537 22726433 20 + 28711273 CAGGGAGGTAACCTGTGTAC-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343036 21 + 61074082 CAGGCTGCTGATC-ATGTCTCT i canFam3.chr9 C 0 I 6 s dasNov3.JH570468 313911 20 - 852752 CAATATGCTGACC-ATATTTT- i dasNov3.JH570468 C 0 C 0 a score=2838472.000000 s hg38.chr17_GL383564v2_alt 10730 167 + 133151 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTACGTGT--CC-TTCACCCTCACTGCACTGCA s panTro5.chr17 16204611 167 + 83181570 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCTCAGCACACCTTGGTACGTGT--CC-TTCATCCTCACTGCACTGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16111968 167 + 83442489 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCTCAGCACACCTTGGTACGTGT--CC-TTCACCCTCACTGCACTGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947076 167 + 4267968 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCTGAGATCCTGGAGCTGAGATGCA-CGGTGAACGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTACGTGT--CC-TTCACCCTCACTGCACTGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925449 167 - 2193130 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCTGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CAGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--TC-TTCACCCTCACTGCACTGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999679 167 - 77216781 CCGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912279 167 - 80997621 CCGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968558 167 + 10377808 CCGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CAGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855655 167 - 8458610 CTGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64811976 167 + 75148670 CTGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CAGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035143 167 + 4244037 CTGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062354 167 + 4569836 CTGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGTCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACCACACTGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028288 167 - 159171411 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAAATTCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAACGCTCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTACGTGT--CC-TTCACCCTCACTGCACTGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754481 167 + 3513951 CTGTGCTCCAGTCCGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGCGATGCA-CCGTGAACGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTACGTGA--CC-TTCACCCTCACTACACTGCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1803939 167 + 1920343 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCTGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAACGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTACGTGT--CC-TTCACCCTCACTGCACTGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6914987 167 - 7032639 CTGTGCTTCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCA-CGGTGAATGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCTTGGTATGTGT--CC-TTCACCCTCACTGCACTGCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842304 166 - 65901067 TTGTGCTCCAGTC-GAAGGCATCAGCCTGCAGGCCATGTCCTGCTC-GAGGAGCTGCAGTGCTGCCAGTCTGAGATCCTGGAGCTGAGATGCAGCGGTGAACGCCCTGGAGGTGGAGCGCCAAGCCCAGCACA-CCTGGTACGTGT-CCC-TTCACCCTCACTGCACTGCA i micMur3.chr16 I 7 T 24098 s proCoq1.NW_012135969v1 2923960 169 + 8555354 CTGTGCCCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCGGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGGTGCA-CGGTGAACGCCCTGGAGGTGGAGCGCCAAGCCCAGCACACCCTGGTACGTGTCCCC-CTCTCCCTCAGTGCATTGCA i proCoq1.NW_012135969v1 T 14694 C 0 s otoGar3.GL873537 22726453 169 + 28711273 TTGTGCCGCAGTCCGAGGGTATCAGCCTGCAGGCCATGTCCTGCTCTGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGATGCT-CGGTGAATGCCCTGGAGGTGGAGCGCCAGGCCCAGCACACCCTGGTATGTGGCCCC-TTCACCCTCCCCACACTGCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343063 160 + 61074082 TTGTGCTTCAGTCTGAGAGCATCAGCCAGCAGGACATGTCCTGCTCTGAGGAGTTGCGGTGCTGCCAGTCGGAGATCCTGGAGCTGAGACGCA-CGGTGAACGCCCTGGAGGTGGAGCTTCAGGCCCAGCACACACTGGTGAGC-T--CC-TTTGCACAC------CTGGA i canFam3.chr9 I 6 C 0 s dasNov3.JH570468 313931 128 - 852752 ---TGGTCCA----GGGTGCTTCAGTCTGAAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAATCAGAGATCCTGGAGCTGAGATGTC---------------------------------CTGCACAACCTGATATGCAT--CCTTTCTCCTTCAGCACACTGC- i dasNov3.JH570468 C 0 C 0 a score=35173.000000 s hg38.chr17_GL383564v2_alt 10897 13 + 133151 AATGCCCC-----ATGCC s panTro5.chr17 16204778 13 + 83181570 AATGCCCC-----GTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112135 13 + 83442489 AATGCCCC-----GTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947243 12 + 4267968 AATG-CCC-----GTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925616 13 - 2193130 AGTGCCCC-----GTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999846 13 - 77216781 AATGCCCC-----ATGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912446 13 - 80997621 AATGCCCC-----ATGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968725 13 + 10377808 AATGCCCC-----GTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855822 13 - 8458610 AATACCCC-----ATGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812143 13 + 75148670 AATGCCCC-----GTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035310 13 + 4244037 AATGCCCC-----GTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062521 13 + 4569836 AATGCCCC-----GTGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028455 8 - 159171411 AACGCCAC---------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754648 8 + 3513951 AACGCCAG---------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804106 8 + 1920343 AACGCCAC---------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915154 13 - 7032639 AATGCCACATCCC----- i aotNan1.NW_018502359v1 C 0 I 35 s micMur3.chr16 35818372 13 - 65901067 GTCACCTC-----ACTCC i micMur3.chr16 T 24098 C 0 s proCoq1.NW_012135969v1 2924129 13 + 8555354 GTCGCCAC-----ACTCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726622 13 + 28711273 GTCACTCT-----GCCCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343223 4 + 61074082 -AGAC------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314059 13 - 852752 AGTGCCAT-----CGGCC i dasNov3.JH570468 C 0 C 0 a score=92587.000000 s hg38.chr17_GL383564v2_alt 10910 12 + 133151 ATGTCCTGG--TAG s panTro5.chr17 16204791 12 + 83181570 ATGTCCTGG--TAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112148 12 + 83442489 ATGTCCTGG--TAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947255 12 + 4267968 ATGTCCTGG--TAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925629 12 - 2193130 ATGTCCTAG--TAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999859 12 - 77216781 ATGGCCTAG--TAG i rheMac8.chr16 C 0 I 97 s macFas5.chr16 27912459 12 - 80997621 ATGGCCTAG--TAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968738 12 + 10377808 ATGGCCTAG--TAG i macNem1.NW_012014910v1 C 0 I 97 s cerAty1.NW_012006043v1 1855835 12 - 8458610 ATGGCCTAG--TAG i cerAty1.NW_012006043v1 C 0 I 97 s chlSab2.chr16 64812156 12 + 75148670 ATGGCCTAG--TAG i chlSab2.chr16 C 0 I 98 s manLeu1.NW_012106252v1 2035323 12 + 4244037 ATGGCCTAG--TAG i manLeu1.NW_012106252v1 C 0 I 97 s colAng1.NW_012122154v1 2062534 12 + 4569836 ATGGCCTAG--TAG i colAng1.NW_012122154v1 C 0 I 106 s calJac3.chr5 46028463 12 - 159171411 ATGTCCTGG--TAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754656 14 + 3513951 GTGCCATGGGCTAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804114 12 + 1920343 ATGTCCTGG--TAG i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35818385 12 - 65901067 TTGGACAGG--TAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924142 12 + 8555354 CTGGGCAGG--TAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726635 2 + 28711273 ------------AG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343227 10 + 61074082 TCAGCCTGG--T-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314072 12 - 852752 ATCACCTGG--TAA i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6915167 35 - 7032639 I a score=48487.000000 s hg38.chr17_GL383564v2_alt 10922 11 + 133151 TAGCATCTCTT s panTro5.chr17 16204803 11 + 83181570 TAGCATCTCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112160 11 + 83442489 TAGCATCTCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947267 11 + 4267968 TAGCATCTCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925641 11 - 2193130 TAGCATCTCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27912471 6 - 80997621 -----CCTTTT i macFas5.chr16 C 0 C 0 s calJac3.chr5 46028475 11 - 159171411 TAGCATCTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754670 11 + 3513951 CAGCATTTTAT i saiBol1.JH378271 C 0 I 104 s cebCap1.NW_016107730v1 1804126 11 + 1920343 TAGCATCCCTT i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35818397 11 - 65901067 TAGCAGCTCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924154 11 + 8555354 TAGCAGCTCTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726637 11 + 28711273 CAGCATCTCTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343237 11 + 61074082 TCCCATTCCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314084 11 - 852752 TAATAACTCTT i dasNov3.JH570468 C 0 I 1 e aotNan1.NW_018502359v1 6915167 35 - 7032639 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I a score=16895.000000 s hg38.chr17_GL383564v2_alt 10933 10 + 133151 A------AAG---TCTCAC s panTro5.chr17 16204814 10 + 83181570 A------AAG---TCTCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112171 10 + 83442489 A------AAG---TCTCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947278 10 + 4267968 A------AAG---TCTCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925652 10 - 2193130 A------AAG---TCTCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27912477 16 - 80997621 ATTTTGGAGG---TCTCAC i macFas5.chr16 C 0 I 50 s calJac3.chr5 46028486 10 - 159171411 A------AAG---TCTCAC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1804137 10 + 1920343 A------AAG---TCTCAC i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35818408 8 - 65901067 G------GAG---TCTC-- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924165 8 + 8555354 G------GAG---TCTC-- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726648 11 + 28711273 A------GAAATCTCTC-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343248 4 + 61074082 A------GAG--------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314096 10 - 852752 G------AAG---TCTCCC i dasNov3.JH570468 I 1 C 0 e aotNan1.NW_018502359v1 6915167 35 - 7032639 I e saiBol1.JH378271 1754681 104 + 3513951 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I a score=33022.000000 s hg38.chr17_GL383564v2_alt 10943 9 + 133151 AAATCAGTT s panTro5.chr17 16204824 9 + 83181570 AAATCAGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112181 9 + 83442489 AAATCAGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947288 9 + 4267968 AAATCAGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925662 9 - 2193130 AGATCAGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028496 9 - 159171411 AAATCAGTT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1804147 9 + 1920343 AAATCAGTT i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35818416 9 - 65901067 TGATCAGCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924173 9 + 8555354 TATTCAGTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726659 9 + 28711273 TAATGAGTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343252 5 + 61074082 ----CAGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314106 9 - 852752 TGATAAGTT i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6915167 35 - 7032639 I e saiBol1.JH378271 1754681 104 + 3513951 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=23785.000000 s hg38.chr17_GL383564v2_alt 10952 9 + 133151 CCTTCAACA s panTro5.chr17 16204833 9 + 83181570 ACTTCAACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112190 9 + 83442489 ACTTCAACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947297 9 + 4267968 CCTTCAACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925671 9 - 2193130 CCTTCAACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028505 9 - 159171411 CCTTCAATG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1804156 9 + 1920343 CCTTCAATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915202 9 - 7032639 CCCCCAAAA i aotNan1.NW_018502359v1 I 35 C 0 s micMur3.chr16 35818425 9 - 65901067 CCTGTAACA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924182 9 + 8555354 CCTCTAACA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726668 9 + 28711273 CCTCTGTCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343257 3 + 61074082 CCT------ i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314115 9 - 852752 TCTTGAACA i dasNov3.JH570468 C 0 C 0 e saiBol1.JH378271 1754681 104 + 3513951 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=299892.000000 s hg38.chr17_GL383564v2_alt 10961 79 + 133151 TTAAGTCAA-------GATCTGGGGTCCTCTATACCCGATGGAGACGTCTTGCTGTCAAGTTCAGTGTGACCCAGGGAAATGGTTT s panTro5.chr17 16204842 79 + 83181570 TTAAGTCAA-------GATCTGGGGTCCTCTATACCCGATGGAGACGTCTTGCTGTCAAGTTCAGTGTGACCCAGGGAAATGGTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112199 79 + 83442489 TTAAGTCAA-------GATCTGGGGTCCTCTATACCCGATGGAGACGTCTTGCTGTCAAGTTCAGTGTGACCCAGGGAAATGGTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947306 79 + 4267968 TTAAGTCAA-------GATCTGGGGTCCTCTATACCCGATGGAGACATCTTGCTGTCAAGTTCAGTGTGACCCAGGGAAATGGTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925680 79 - 2193130 TTAAGTCAA-------GATCTGGGGTCCTCTATACCCGATGGAGACGTCTTGCTGCCAAGTTCAGTGTGACCCAGGGAAATGGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028514 79 - 159171411 TTAAGTCGA-------GATCTGGGTTCCTTTATACCCGATGGAGACATCTTTCTGTCAAGTTCAGAGTGATCCAGGGAAATGGTTT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1804165 79 + 1920343 TTAAGTCAA-------GATCTGGGTTCCTCTATACCTGATGGAGACATGTTTCTGTCAAGTTCAGTGTGACCCAGGGAAATGGTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915211 79 - 7032639 CGAAGTCAA-------GATCTGGGTTCCTCTATACCCGATGGAGACATCTTTCTGTCAAGTTCAGTGTGACCCAGGGAAATGTTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818434 84 - 65901067 TTAAGTCAGCACTT--GACCCGGGTCCCTGTCTGCCTGGTGGAGGTGCCTTGCTGTCAAAACCAGTTTGACCCAGAGACAAGGTTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924191 84 + 8555354 TTAAGTCAGCACTC--GACCCGGGTCCCTGTCTGCCTCGTGGAGATGGCTTGCTGTCAAGGCCAGTTTGACCCAGAGGAACGGTTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726677 81 + 28711273 TTAAGGAAGGGCTC--ATTCTGGGTCCC--CTATCCTGGTGGAGATGCCTTACTGTCAA-TCCAGTTTGAGCTAGGGAAGTATTTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22013821 73 - 122082543 TTAAGTCAA--------CTCTCAGACTCTCTGT----GGGGGAGAGGCTTTGCTCTCAA-ATCAGCTTGCCCCAGAGCAGCGTTCA i mm10.chr11 N 0 C 0 s canFam3.chr9 21343260 44 + 61074082 -----------------GGTTCAGTCCCTGCCTCCC------------------------TTAAGTACAGACCAG-GACACAGTTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314124 85 - 852752 GTAAGTCAGAGCCCAGGATTTTGGTCCTTCTCTTCCTGATGGAGATGCCTTGTTGCCAAGTTCTCT-TGACCCAGAGAAGCAGTTC i dasNov3.JH570468 C 0 C 0 e saiBol1.JH378271 1754681 104 + 3513951 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=316915.000000 s hg38.chr17_GL383564v2_alt 11040 83 + 133151 CTTCAGAAAATCAAGTCCACTTCCTTTACAA---------CACAG-TGCGGAAGTTCAGGcact---cactccacaagattttacgaggtgcctgc s panTro5.chr17 16204921 83 + 83181570 CTTCAGAAAATCAGGTCCACTTCCTTTACAA---------CACAG-TGCGGAAGTTCAGGcact---cactccacaagattttacgaggtgcctgc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112278 83 + 83442489 CTTCAGAAAATCAGGTCCACTTCCTTTACAA---------CACAG-TGCGGAAGTTCAGGcact---cactccacaagattttacaaggtgcctgc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947385 83 + 4267968 CTTCAGAAAATCAAGTCCACTTCCTTTACAA---------CACAG-TGCAGAAGTTCAGGcact---cactccacaagattttacgaggtgcctgc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925759 83 - 2193130 CTTCAGAAAATCAAGTCCACTTCCTTTACAA---------CACAG-TGCGGAAGTTCAGGcact---catgccacaagattttacgaggtgcctgc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028593 83 - 159171411 TTTCAAAAAGTCAAGTCCACCTGCTTGACAA---------CACAG-TGCAGAAGTTCAGGcact---catgtcacaagatttcactaggtggccgc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754785 76 + 3513951 -CTTAACAAAACAA---TGTCTCTTTTAAAA---------CATAT-TTAAGAA---TAGGcatt---taatgcaccaaaatttactgagttctaat i saiBol1.JH378271 I 104 C 0 s cebCap1.NW_016107730v1 1804244 83 + 1920343 CTTCAAAAAGTCAAGTCCACCTGCCTTACAA---------CACAG-TGCAGAAGTTCAGtcact---cgtgccacaagatttcactaggtggctgc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915290 83 - 7032639 TTTCAAAAAGTCAAGTCCACCTGCTTTACAA---------CACAG-TGCAGAAGTTCAGGcact---cgtgccacaagatttcactaggtggctgc i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818518 83 - 65901067 CTATAAGAAGTCCACTCCACTTCCTTCAGAA---------TATAG-CGTGGAAGTTCGAGcact---catctcacaagattttactgggtgtcaac i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924275 83 + 8555354 CTATAAAAAGTCCATTCCACTTCCTTTAGAA---------TGCAG-TGTGGAAGTTCGGGcact---catttcacaagattttactgggtgccaac i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726758 82 + 28711273 CTATAAAAAGCCAGTTCCATTTCCTTTTGAA---------GATAC-TATGGCA-TTCAGGcact---cattttataagattttactggctgcctgc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22013894 73 - 122082543 CATCAAAAGTGC---------TCCTTTGGAA---------TGACG-CAC-GTGGCCCAGCTGTT---CATTTAACACAATGTCTCTGGATGATGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21343304 90 + 61074082 -----AAACCTTGAGTTCCTTGCCTTTGCAAGAACTTTCTCATAGATGTGGCTGCTGAGGGAATGAACATTCCTTCAGATG-AGCGAGGTCCTGCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314209 83 - 852752 CTGTTAAAAATCAACCTCAGTTCTTTTAGAA---------AAAAG-TGTGGAAGCTCACGCACA---CAATCAACAAGGTTTTCCTGGTTACCTAT i dasNov3.JH570468 C 0 I 390 e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=272385.000000 s hg38.chr17_GL383564v2_alt 11123 58 + 133151 tttttgtcaagcactg-ggg-atacagggatgaac-atgac--agttcctTAAGTTAGATTTG s panTro5.chr17 16205004 58 + 83181570 tttttgtcaagcactg-ggg-atacagggatgaac-acgac--agttcctTAAGTTAGATTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112361 58 + 83442489 tttttgtcaagcactg-ggg-atacagggatgaac-acgac--agttcctTAAGTTAGATTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947468 57 + 4267968 tttttgtcaagcactg-ggg-atacagggat-aac-atgac--agttcctTAAGTTAGATTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925842 58 - 2193130 tttttgtcaagcactg-ggg-atacagggatgaac-acgac--agttcctTAAGTTAGATTCG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028676 58 - 159171411 tttttgtcaagcactg-ggg-atacagggatgaac-atgac--agttcctAAAGTTAGATTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754861 55 + 3513951 tttttggggggcattg-gaa-atatagagatcaat-aacat--gcagcc---AGTTAAGTTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804327 58 + 1920343 tttttgtcaaggactg-ggg-atacagggatgaac-atgac--agttcctgAAGTTAGATTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915373 58 - 7032639 tttttgtcaagcactg-ggg-acacagggatgaac-atgac--agttcctgAAGGTAGATTtg i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818601 60 - 65901067 tttttgtcaggcattg-gag-atacagggacgact-gtgacatagttcctTACGTTAGATTTT i micMur3.chr16 C 0 I 4 s proCoq1.NW_012135969v1 2924358 52 + 8555354 tttttgtcaggcattg----------GGGATGACC-GTGACACAGTTCCTTATGTTAGATTTC i proCoq1.NW_012135969v1 C 0 I 10 s otoGar3.GL873537 22726840 61 + 28711273 tttttgtcaggtacgggggg-atacagggatgaac-gtgacacagttcctTAAGTTAGATCTG i otoGar3.GL873537 C 0 I 5 s mm10.chr11 22013967 57 - 122082543 TTTTGGCCGGGTATTG-AGA-ACACATGAATGTGC-AGGGCAAAGGTTTT---GTTAGAATTT i mm10.chr11 C 0 I 1 s canFam3.chr9 21343394 50 + 61074082 AATTTATC-----CTG-AGGTCTACAATGATGAGCAATGGC--ACATC-----ATTAGTTCTT i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 314682 58 - 852752 tttttgtcaggtattg-gga-atacagggataaac-atgat--agctccttCAGTTAGGTTTT i dasNov3.JH570468 I 390 C 0 e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=1467.000000 s hg38.chr17_GL383564v2_alt 11181 4 + 133151 TGTG- s panTro5.chr17 16205062 4 + 83181570 TGTG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112419 4 + 83442489 TGTG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947525 4 + 4267968 TGTG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925900 4 - 2193130 TGTG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028734 4 - 159171411 Cgtg- i calJac3.chr5 C 0 I 31 s saiBol1.JH378271 1754916 4 + 3513951 GGAG- i saiBol1.JH378271 C 0 I 8 s cebCap1.NW_016107730v1 1804385 4 + 1920343 CGTG- i cebCap1.NW_016107730v1 C 0 T 16631 s aotNan1.NW_018502359v1 6915431 4 - 7032639 cgtg- i aotNan1.NW_018502359v1 C 0 I 16 s micMur3.chr16 35818665 4 - 65901067 TGTG- i micMur3.chr16 I 4 C 0 s otoGar3.GL873537 22726906 4 + 28711273 TGTT- i otoGar3.GL873537 I 5 C 0 s mm10.chr11 22014025 2 - 122082543 --TG- i mm10.chr11 I 1 C 0 s canFam3.chr9 21343446 2 + 61074082 AG--- i canFam3.chr9 I 2 I 1 s dasNov3.JH570468 314740 4 - 852752 -TTGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2924410 10 + 8555354 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=3259.000000 s hg38.chr17_GL383564v2_alt 11185 5 + 133151 CATGA s panTro5.chr17 16205066 5 + 83181570 TATGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112423 5 + 83442489 TATGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947529 5 + 4267968 TATGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925904 5 - 2193130 TATGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028769 5 - 159171411 tgtgt i calJac3.chr5 I 31 C 0 s saiBol1.JH378271 1754928 5 + 3513951 GGTTT i saiBol1.JH378271 I 8 C 0 s cebCap1.NW_016107730v1 1787758 5 + 1920343 tgtgt i cebCap1.NW_016107730v1 T 16631 C 0 s aotNan1.NW_018502359v1 6915451 5 - 7032639 tgtgt i aotNan1.NW_018502359v1 I 16 C 0 s micMur3.chr16 35818669 5 - 65901067 TATGA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22726910 4 + 28711273 TATG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343449 4 + 61074082 TGAG- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 314744 5 - 852752 TGTAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22014027 0 - 122082543 C e proCoq1.NW_012135969v1 2924410 10 + 8555354 I e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=236828.000000 s hg38.chr17_GL383564v2_alt 11190 86 + 133151 GAGAGAAGTCATGGTC--ATGTTGACAGTGAT-------TTCTCCAGAGCT--------CTGAGAATGT-CCTATGACATTTTGGAATTTGCCCTATGTGTGAT s panTro5.chr17 16205071 86 + 83181570 GAGAGAAGTCATGGTC--ATGTTGACAGTTAT-------TTCTCCAGAGCT--------CTGAGAATGT-CCTATGACATTTTGGAATTTGCCCTATGTGTGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112428 86 + 83442489 GAGAGAAGTCATGGTC--ATGTTGACAGTTAT-------TTCTCCAGAGCT--------CTGAGAATGT-CCTATGACATTTTGGAATTTGCCCTATGTGTGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947534 86 + 4267968 GAGAGAAGTCATGGTC--ATGTTGACAGTGAT-------TTCTCCAGAGCT--------CTGAGAATGT-CCTATGACATTTTGGAATTTGCCCTATGTGTGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925909 86 - 2193130 GAGAGAAGTCTTGGTC--ATGTTGACAGTGAT-------TTCTCCAGAGCT--------CTGAGAATGT-CCTATGACATTTTGGATTTTGCCCTATGTGTGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028774 86 - 159171411 gtgtgAAGTCATGGTC--CAATCGACAGTGAC-------CTCTCCAGAGCT--------CTGAGAATGT-CCTGTGACATACTGGAATTTGCCCCATGTCTGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1754933 80 + 3513951 GGGAAAAGACTTGTTCA-CTGTCAAC-TTGAT-------TTATCAAGGGCT--------CTGGGG-------TATGAGTTCCTGGAATTCACCCTGTGCTAGGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1787763 74 + 1920343 gtgtgAAGTCATG-----------ACAGTGAT-------CTCTCCAGAGCT--------CTGAGAATG----TGTGACATGTTGGAATTTGCCCCATGTCTGGC i cebCap1.NW_016107730v1 C 0 I 16747 s aotNan1.NW_018502359v1 6915456 86 - 7032639 gtgAGAAGTCATGGTC--CCATTGACAGTGAT-------CTCTCCAGAGCT--------CTGAGAATGT-CCTGTGACATGTTGGAATTTGCCCCATGTCTGGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818674 58 - 65901067 ----AAAGTCATGGTT--A---TGACAGTGAT-------TTCTTCAGAGCT--------CTTGGAATGT----------------------CCCTATGCCTAAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924420 65 + 8555354 ATGAAAAGCCATGGTT--ATATTGACAGTGGT-------TTCTCCAGAGCT--------CTTGCAATGT----------------------CGCCATGCCTGCT i proCoq1.NW_012135969v1 I 10 C 0 s otoGar3.GL873537 22726914 84 + 28711273 ---GAAAGAAATGCTT--ATATAGACAGTGAC-------TTCTCTAGAGAT--------CTTGGAATGTCCTATGGATGTCTCGGAATTTGCCCCACGCCTGGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014027 74 - 122082543 ATGGGAACTTCTTATG--GTATTGGCAATGCT-------GATTTCAGAGCT--------CTAGAGGCGT-TCTCCAAACCCTCCGAATTTGA------------ i mm10.chr11 C 0 C 0 s canFam3.chr9 21343453 68 + 61074082 ----------------GAGTGCTAACAGGAGCTAGGTTGTTCTCCAGGCCTGGCAACACCTTGGGGTGT-CACA-GACTTACTGGA------------------ i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314749 78 - 852752 ------ACTTATGATC--ATATTAATGTTGAT-------TTTTCCAGAGCT--------CTGGGGATGT--CTAGAACTTCTTGGATTTT-TTCTGTGCTTGGT i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=87801.000000 s hg38.chr17_GL383564v2_alt 11276 20 + 133151 GAGTTTGG----------TCA----------------TGATTT--------TCA s panTro5.chr17 16205157 20 + 83181570 GAGTTTGG----------TCA----------------TGATTT--------TCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112514 20 + 83442489 GAGTTTGG----------TCA----------------TGATTT--------TCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947620 20 + 4267968 GAGTTTGG----------TCA----------------TGATTT--------TCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1925995 20 - 2193130 GAGTTTCG----------TCA----------------TGATTT--------TCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028860 20 - 159171411 GAGTTTGG----------ATA----------------TACTTT--------TCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755013 44 + 3513951 GAGTTTCG----------ACACTGCAGCATTTTTAGCCACTTTGATGGTTATCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804584 20 + 1920343 GAGTTTGG----------ACA----------------TACTTT--------TCA i cebCap1.NW_016107730v1 I 16747 C 0 s aotNan1.NW_018502359v1 6915542 20 - 7032639 GAGTTTGG----------ACA----------------TACTTT--------TCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818732 20 - 65901067 GAGTTTGG----------CCA----------------GGATTT--------TCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924485 20 + 8555354 GAGTTTGG----------CTG----------------GGATTT--------TCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22726998 20 + 28711273 GGGTTTGG----------CCA----------------GGATTT--------TCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014101 20 - 122082543 GAGTTTTG----------CCA----------------TGGTCT--------TCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21343521 29 + 61074082 GAGACTGGGGGCTGCAGTCCA----------------CGATTT--------TC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 314827 20 - 852752 ATGTTTGA----------CCA----------------TGATTT--------TCA i dasNov3.JH570468 C 0 T 17658 e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=35383.000000 s hg38.chr17_GL383564v2_alt 11296 6 + 133151 CTGCTG s panTro5.chr17 16205177 6 + 83181570 CTGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112534 6 + 83442489 CTGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947640 6 + 4267968 CTGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926015 6 - 2193130 CTGCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46028880 6 - 159171411 CTGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755057 6 + 3513951 CCATCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804604 6 + 1920343 CTGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915562 6 - 7032639 CTGCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818752 6 - 65901067 TTGCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924505 6 + 8555354 TTGCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727018 6 + 28711273 TTGCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014121 6 - 122082543 TGGCTG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 297189 6 - 852752 CTGCTA i dasNov3.JH570468 T 17658 C 0 e canFam3.chr9 21343550 0 + 61074082 C e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I e macFas5.chr16 27912493 50 - 80997621 I a score=118746.000000 s hg38.chr17_GL383564v2_alt 11302 22 + 133151 AGTTT---TGGGGCA---------------------CCTGGATCTC s panTro5.chr17 16205183 22 + 83181570 AGTTT---TGGGGCA---------------------CCTGGATCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112540 22 + 83442489 AGTTT---TGGGGCA---------------------CCTGGATCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947646 22 + 4267968 AGTTT---TGGGGCA---------------------CCTGGATCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926021 22 - 2193130 AGTTT---TGGGGCA---------------------CCTGGATCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27912543 25 - 80997621 AGTTTCCCTGGGGCC---------------------TTTGCACATT i macFas5.chr16 I 50 C 0 s calJac3.chr5 46028886 22 - 159171411 AGTTT---TGGGGTA---------------------CCAGGATCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755063 43 + 3513951 AAATC---TGGGGCATGTGGCAGTTTCTCTGGGGACCTTGGGTATT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804610 22 + 1920343 AGTTT---TGGGGCA---------------------CCAGGATCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915568 22 - 7032639 AGTTT---TGGGGCA---------------------CCAGGATCTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818758 22 - 65901067 AGTTT---TGGGGCA---------------------CCCGGGTCTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924511 22 + 8555354 AGTTT---TGCGGCA---------------------CCCGGGTCTC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727024 21 + 28711273 AGTTT---TG-GGCA---------------------CCTGGGTCTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014127 22 - 122082543 AATGT---AGTGGTA---------------------CCTAGGTTTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21343550 12 + 61074082 -------------CA---------------------TCTGGTTCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 297195 22 - 852752 AATTT---TGGGGCA---------------------CCTGGGTTTT i dasNov3.JH570468 C 0 C 0 e macNem1.NW_012014910v1 1968750 97 + 10377808 I e colAng1.NW_012122154v1 2062546 106 + 4569836 I e manLeu1.NW_012106252v1 2035335 97 + 4244037 I e chlSab2.chr16 64812168 98 + 75148670 I e cerAty1.NW_012006043v1 1855847 97 - 8458610 I e rheMac8.chr16 29999871 97 - 77216781 I a score=47811.000000 s hg38.chr17_GL383564v2_alt 11324 8 + 133151 TTA-CCCCA s panTro5.chr17 16205205 8 + 83181570 TTA-CCCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112562 8 + 83442489 TTA-CCCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947668 8 + 4267968 TTA-CCCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926043 8 - 2193130 TTA-CCCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999968 8 - 77216781 TTA-TCCCC i rheMac8.chr16 I 97 C 0 s macFas5.chr16 27912568 8 - 80997621 TTA-TCCCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968847 8 + 10377808 TTA-TCCCC i macNem1.NW_012014910v1 I 97 C 0 s cerAty1.NW_012006043v1 1855944 8 - 8458610 TTA-TCCCC i cerAty1.NW_012006043v1 I 97 C 0 s chlSab2.chr16 64812266 8 + 75148670 TTA-TCCCC i chlSab2.chr16 I 98 C 0 s manLeu1.NW_012106252v1 2035432 8 + 4244037 TTA-TCCCC i manLeu1.NW_012106252v1 I 97 C 0 s calJac3.chr5 46028908 8 - 159171411 TTA-CCTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755106 9 + 3513951 TTATCCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804632 8 + 1920343 TGA-CCCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915590 8 - 7032639 TTA-CCCCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818780 8 - 65901067 TGA-CGCCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924533 8 + 8555354 TTA-CCCCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727045 1 + 28711273 T-------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014149 8 - 122082543 CTA-CTTCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21343562 2 + 61074082 ----TC--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 297217 8 - 852752 TTA-CCCCA i dasNov3.JH570468 C 0 C 0 e colAng1.NW_012122154v1 2062546 106 + 4569836 I a score=166036.000000 s hg38.chr17_GL383564v2_alt 11332 13 + 133151 TTATTTCCCATTA s panTro5.chr17 16205213 13 + 83181570 TTATTTCCCATTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112570 13 + 83442489 TTATTTCCCATTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947676 13 + 4267968 TTATTTCCCATTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926051 13 - 2193130 TTATTTCCCACTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999976 13 - 77216781 TTATTTCCCACTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912576 13 - 80997621 TTATTTCCCACTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968855 13 + 10377808 TTATTTCCCACTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855952 13 - 8458610 TTATTTCCCACTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812274 13 + 75148670 TTATTTCCCACTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035440 13 + 4244037 TTATTTCCCACTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062652 13 + 4569836 TTATTTCCCACTA i colAng1.NW_012122154v1 I 106 C 0 s calJac3.chr5 46028916 13 - 159171411 CAATTTCCCACTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755115 13 + 3513951 CAATTTCCCACTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804640 13 + 1920343 TAATTTCCCACTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915598 13 - 7032639 TAATTTCCCACTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35818788 13 - 65901067 CCATTCCCCCCCG i micMur3.chr16 C 0 I 24094 s proCoq1.NW_012135969v1 2924541 13 + 8555354 GCATTTCCCACTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727046 10 + 28711273 ---CTTCCCCCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014157 13 - 122082543 TCCTTCCCTATTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21343564 10 + 61074082 ---TTTGGTATTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 297225 13 - 852752 TCATATCTTATTA i dasNov3.JH570468 C 0 C 0 a score=177811.000000 s hg38.chr17_GL383564v2_alt 11345 9 + 133151 CAGAAGGAC s panTro5.chr17 16205226 9 + 83181570 CAGAAGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112583 9 + 83442489 CAGAAGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947689 9 + 4267968 CAGAAGGAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926064 9 - 2193130 CAGAAGGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999989 9 - 77216781 CAGAAGGAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912589 9 - 80997621 CAGAAGGAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968868 9 + 10377808 CAGAAGGAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855965 9 - 8458610 CAGAAGGAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812287 9 + 75148670 CAGAAGGAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035453 9 + 4244037 CAGAAGGAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062665 9 + 4569836 CAGAAGGAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028929 9 - 159171411 CAGAAGGAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755128 9 + 3513951 CAGAAGGAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804653 9 + 1920343 CAGAAGGAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915611 9 - 7032639 CAGAAGGAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842895 9 - 65901067 CAGAAGGAC i micMur3.chr16 I 24094 C 0 s proCoq1.NW_012135969v1 2924554 9 + 8555354 CAGAAGGAC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727056 9 + 28711273 CAGAAGGAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014170 9 - 122082543 CAGAAACAC i mm10.chr11 C 0 I 244 s canFam3.chr9 21343574 9 + 61074082 CAGAAAGAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 297238 9 - 852752 CAGAAAGCC i dasNov3.JH570468 C 0 C 0 a score=112088.000000 s hg38.chr17_GL383564v2_alt 11354 6 + 133151 TGTCTG s panTro5.chr17 16205235 6 + 83181570 TGTCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112592 6 + 83442489 TGTCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947698 6 + 4267968 TGTCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926073 6 - 2193130 TGTCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 29999998 6 - 77216781 TGTCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912598 6 - 80997621 TGTCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968877 6 + 10377808 TGTCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855974 6 - 8458610 TGTCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812296 6 + 75148670 TGTCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035462 6 + 4244037 TGTCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062674 6 + 4569836 TGTCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028938 6 - 159171411 TGTCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755137 6 + 3513951 TGCCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804662 6 + 1920343 TGTCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915620 6 - 7032639 TGTCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842904 6 - 65901067 TGCCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924563 6 + 8555354 TGCCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727065 6 + 28711273 TGCCTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21343583 6 + 61074082 TGTCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 297247 6 - 852752 TGTCTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22014179 244 - 122082543 I a score=656338.000000 s hg38.chr17_GL383564v2_alt 11360 39 + 133151 CAGAACTCCCTGTGTGAAGCGGAGGACCG-CTACGGCACA s panTro5.chr17 16205241 39 + 83181570 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTATGGCACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112598 39 + 83442489 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTATGGCACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947704 39 + 4267968 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTACGGCACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926079 39 - 2193130 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTTGGCACG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000004 39 - 77216781 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912604 39 - 80997621 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968883 39 + 10377808 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1855980 39 - 8458610 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812302 39 + 75148670 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035468 39 + 4244037 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062680 39 + 4569836 CAGAACTCCCTGTGTGAAGCTGAGGACCG-CTTCGGCACG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028944 39 - 159171411 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTACGGCACG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755143 39 + 3513951 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTTTGGCACG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804668 39 + 1920343 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTACGGCACG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915626 39 - 7032639 CAGAACTCCCTGTGTGAAGCCGAGGACCG-CTACGGCACG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842910 38 - 65901067 CAGAACTCCCTGTGCGAGGCCGAG--CCGCCTATGGCACG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2924569 39 + 8555354 CAGAACTCCCTGTGCGAGGCCGAGGACCG-CTACGGCACG i proCoq1.NW_012135969v1 C 0 I 1264 s otoGar3.GL873537 22727071 39 + 28711273 CAGAACTCCCTGTGTGAAGCCGAGGCCCG-CTACGGCACG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014423 24 - 122082543 CAGAACT-CCTGTCTGAAGATGAGG--------------- i mm10.chr11 I 244 C 0 s canFam3.chr9 21343589 39 + 61074082 CAGAACTCTCTGTGTGAAGCCGATGCCCG-TTTTGGCACG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 297253 39 - 852752 CAGAGCTCCCTGTGTGAGTATGAGGCCGG-CTATGACACT i dasNov3.JH570468 C 0 C 0 a score=3488766.000000 s hg38.chr17_GL383564v2_alt 11399 194 + 133151 GAGCTGGCCCAGATGCAGAGCCTCATTAGCAACTTGG--AAGAGCAGTTG-TCTGAGATCC-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGTTGGAGAACGAGATTGCCACATACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- s panTro5.chr17 16205280 194 + 83181570 GAGCTGGCCCAGATGCAGAGCCTCATTAGCAACTTGG--AAGAGCAGTTG-TCCGAGATCC-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTATCAGGTGCTGCTGGACGTGAAGGCCCGGTTGGAGAACGAGATTGCCACATACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATTTGGGCAATTCCT---- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112637 194 + 83442489 GAGCTGGCCCAGATGCAGAGCCTCATTAGCAACTTGG--AAGAGCAGTTG-TCCGAGATCC-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGTTGGAGAACGAGATTGCCACATACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATTTGGGCAATTCCT---- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947743 194 + 4267968 GAGCTGGCCCAGATGCAGAGCCTCATTAGCAACTTGG--AAGAGCAGTTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGTTGGAGAATGAGATTGCCACATACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926118 194 - 2193130 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAATGTGG--AGGAGCAGTTG-TCCGAGATCA-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGTTGGAGAATGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAAGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000043 194 - 77216781 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCTCGGCTGGAGAATGAGATTGCCACGTATCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912643 194 - 80997621 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCTCGGCTGGAGAATGAGATTGCCACGTATCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1968922 194 + 10377808 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCTCGGCTGGAGAATGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856019 194 - 8458610 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAATGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGATGTGAAGGCTCGGCTGGAGAATGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTAATCTGGGCAATTCCT---- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812341 194 + 75148670 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACATGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGCTAGAGAATGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTAATCTGGGCAATTCCT---- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035507 194 + 4244037 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCTCGGCTGGAGAATGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTAATCTGGGCAATTCCT---- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062719 194 + 4569836 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTAGACGTGAAGGCCCGGCTGGAGAACGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTATGTGTAATCTGGGCAATTCTT---- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46028983 194 - 159171411 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCTGAAATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTATCAGGTGCTGCTGGACGTGAAGGCCCGGCTGGAGAACGAGATTGCCACGTACCGGAACCTTCTAGAAAGCGAGGACTGCAAGTATGTGTGATCTGGGCAATTCCT---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755182 194 + 3513951 GAGCTGGCCCAGATGCAGAGCCTGATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GCGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGCTGGAGAACGAGATTGCCACGTACCGAAACCTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804707 194 + 1920343 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCTGAAATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTGAAGGCCCGGCTGGAGAACGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTATGTGTCATCTGGGCAATTCCT---- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915665 194 - 7032639 GAGCTGGCCCAGATGCAGAGCCTGATCAGCAACGTGG--AGGAGCAGCTG-TCCGAGATCC-GGGCTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGTTGGACGTGAAGGCCCGGCTGGAGAGCGAGATTGCCACGTACCGGAACCTTCTGGAGAGCGAGGACTGCAAGTAGGTGTGATCTGGGCAATTCCT---- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35842948 194 - 65901067 GAGCTGGCCCAGATGCAGAG-CTCATC-GCAACGTGGGAGGAGGCAGCTGTTCCGAGATCCGGGGCCGAGCTGGAGCGGCAGAGACCAGGAGTACCAGGTGCTGCTGGACGTGAAGG--CGGCTGCGAGACGAGATCAACACGTACCGGAAATTTCTGGAGTGCGAGGACT-CAAGTATGTGTGATCTGGACAATTCCT---- i micMur3.chr16 C 0 I 951 s proCoq1.NW_012135969v1 2925872 194 + 8555354 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AGGAGCAGCTG-TCTGAGATCC-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTCAAGGCCCGGCTGGAGGACGAGATCAACACATACCGGAAACTTCTGGAGTGCGAGGACTGCAAGTACGTGTGATCTGGGCAATTCCT---- i proCoq1.NW_012135969v1 I 1264 I 4 s otoGar3.GL873537 22727110 194 + 28711273 GAGCTGGCCCAGATGCAGAGCCTCATCAGCAACGTGG--AAGAGCAGCTG-TCCGAGATCC-GGGCCGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGACGTCAAGGCCCGGCTGGAGGATGAGATCAACACGTACCGGAAACTTCTGGAGAGCGAGGACTGCAAGTACGTGTGATCTGAGCCATGCCT---- i otoGar3.GL873537 C 0 I 4 s mm10.chr11 22014447 188 - 122082543 ----TATCTATGGTCCTGAGCCTCCTTAGCAACTTAG--AGAGATGGCTA-TCTGAGGTCT-GGGCTCAACCGGAGGCAGAGA-ACTAGAAACAGTAGAAGCTTGTGGGCACCAGGGCCTACTTGTGGGGTGTGATTAACATGTACTAGAGCCTTCTGGAGAGTGAGTGCTGCACGTA--TGTAATGTAGGCGAACCCT---- i mm10.chr11 C 0 I 4 s canFam3.chr9 21343628 194 + 61074082 GAGCTGGCGCAGATGCAGATCCTGATCAGCAACGTGG--AGGAGCAGCTG-TCTGAGATCC-GGGGTGACCTGGAGCGGCAGA-ACCAGGAGTACCAGGTGCTGCTGGATGTCAAGGCTCGGCTGGAGTGTGAGATTGCCACGTACCGGAAACTTCTGGAGAGTGAGGATTGCAAGTAGGTGTGATCGGGTCAATTTCT---- i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 297292 197 - 852752 GAGCAAGCCCAGATGCAGGACCTGATAAAAAATGTGG--AGGAGCTGCTG-ATGGAGATCT-GGGCTGACCTGGAGTGACAAA-ATCAGGAATACCAGGTGCTGCTGGATGTCAAGGCCCTG-TGGAGGGTGAGATTGCTACACAATGGAACCTTCTCGAGAGTGAGAACTGCAAGTACGTGTCATCTAGGTGATTCTTGGCT i dasNov3.JH570468 C 0 C 0 a score=1828433.000000 s hg38.chr17_GL383564v2_alt 11593 152 + 133151 AAGCCACACACATGACTGTCAGGCAATTCCTCAGAGGTAATGGAAGTGCTTGCAGAA---GATATCATCT-TAACAAACAAGCCTTCCTGTGCTCTCTTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT s panTro5.chr17 16205474 152 + 83181570 AAGCCACACACATGACTGTCAGGCAATTCCTCAGAGGTAATGGAAGTGCTTGCAGAA---GATATCATCC-TAACAAACAAGCCTTCCTGTGCTCTCTTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112831 152 + 83442489 AAGCCACACACATGACTGTCAGGCAATTCCTCAGAGGTAATGGAAGTGCTTGCAGAA---GATATCATCC-TAACAAACAAGCCTTCCTGTGCTCTCTTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3947937 152 + 4267968 AAGCCACACACATGACTGTCAGGCAATTCCTCAGAGGTAATGGAAGTGCTTGCAGAA---GATATCATCT-TAACAAACAAGCCTTCCTGTGCTCTCTTGCTCA-GTGACTCATTAACCTTTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926312 149 - 2193130 AAGCCACACACATGACTGTCAGGCAATTCCTCAGAGGTAATGGAAGTGCTTGCAGAA---GATATCATCT-TAACAAACAAGCCTTCCTGTGCTCTCTTGCTCA-GTGACTCATTAAC---TTCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000237 152 - 77216781 AAACCACACACATGACTATCAGGCAATTCCTCAGAGGTGATGGAAGTGCTTGCAGAA---GATATCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912837 152 - 80997621 AAACCACACACATGACTATCAGGCAATTCCTCAGAGGTGATGGAAGTGCTTGCAGAA---GATATCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969116 152 + 10377808 AAACCACACACATGACTATCAGGCAATTCCTCAGAGGTGATGGAAGTGCTTGCAGAA---GATATCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856213 152 - 8458610 AAACCACACACATGACTGTCAGGCAATTCCTCAGAGGTGATGGAAGTGCTTGCAGAA---GATATCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCA-GTGACTCATTAacctctcctggtctgtgcagactggatcattgagaaaatgt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812535 152 + 75148670 AAACCACACACATGACTGTCAGGCAATTCCTTAGAGGTGATGGAAGTGCTTGCAGAA---GATACCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035701 152 + 4244037 AAACCACACACATGACTGTCAGGCAATTCCTCAGAGGTGATGGAAGTGCTTGCAGAA---GATATCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCA-GTGACTCATTAacctctcctggtctgtgcagactggatcactgagaaaatgt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2062913 153 + 4569836 AAACCACACACATGACTGTCAGGCAATTCCTCAGAGGTGATGGAAGTGCTTGCAGAA---GATATCATCT-TAATAAACAAGCCTTCCTGTGCTTTCCTGCTCAGGTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGGATTATTGAGAAAATGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029177 145 - 159171411 AAGCC-------TGACGGTCAGGTGATTCCTTAGAAACAATGGAAGTGCTTGCAGAA---GATATGATCT-TAACACACAAGCCTTCCTGTGCTTTCTTGCTCG-GTGACTCATTAACCTCTCCTGGTCTGTACAGGCTGAATTATTGAGAAAATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755376 144 + 3513951 AAGCC-------TGATGGTCAGGCGATTCCTCAGAAATAATGGAAGTGCTTGCAGAA---GATATGATC--TAACAGACAAGCCTTCCTGTGCTTTCTTGCTCC-ATGACTCATTAACCTCTCCTGGTCTGTGCAGACTGAATTATTGAGAAAATGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1804901 134 + 1920343 AAGCC-------TGATGGTCAG-----------GAAATAATGGAAGTGCTTGCAGAA---GATACGATCT-TAACAAACAAGCCTTCCTGTGCTTTCTTGCTCA-GTGACTCATTAACCTGTCCTGGTCTGTGCAGAGTGAATTATTGAGAAAATGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6915859 145 - 7032639 AAGCC-------TGACGGTCAGGCGATTCCTCGGAAATAATGGAAGTGCTTGCAGGA---GATACGATCT-TAACAAACAAGCCTTCCTGTGCTTTCTTGCTCA-GTGACTCATTAACCTCTCCTGGTCTGTGCAGACTGAATTCTTGAGAAAATGT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926070 146 + 8555354 AAGCTACATCCATGACCATCAGGCGATTCCTCGGAGATAACTGAAGTGCTTGCAGAA---GGTCTCAT-----CTCTTCTCACCTTCCTGTGCACCCTCACGCA-GTCCCTCACTAACCTCTCCCGG-CTGTGCAGATTAGATTGTTA-TAGAATGT i proCoq1.NW_012135969v1 I 4 C 0 s otoGar3.GL873537 22727308 146 + 28711273 AATCCGTATACCTGACTGTCATGCGATCCCTCAGAGATCACCCAAGTCCTTGCAGAA------CTCGT----AATGTACAGGCCTTCCTGTGCATCCTCACTCA-GGGTCTCACTAAGCTCTCCTGGTCTGTGCAGATTAGATCCTTGCTAGAGTGT i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22014639 129 - 122082543 AAACCACATACCAGGCTGTCAGGCCATTCCTCAGCAATAACTGAAGTGCTTGCGGA------TCTCAGCA-CAAAGAACACACCTTCCTGTGTATCTTTGTCTA-GTGACTCATGCACCTCTAC--------------------GCTGACAGAATGT i mm10.chr11 I 4 C 0 s canFam3.chr9 21343826 154 + 61074082 AAGCCATTCACCTGACTATCAGGGGATTCTTCAGCAATAACTGATGTCATTGTGGAAGGAGATCTCATCA-TAAAGAACAAGCCTCCCTGTGCACACAGGCTTA-GTGACACACCAGC-TTTCCTGGGGTCTGCAGATTATACTATGGGTGGACTGT i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 297489 135 - 852752 TAATCTTTCACCCAATTCTCATGAGATCCCT--AGGGTAACAGTTGTGCT------A--------CATCTACAAAGAAGAAGGCTCTCTGTAAGCTC---CTTA-GTAACTCATTGCTCTGTGCTTGACCTTGCGTTCTGCA--GTTGACAGAGTGT i dasNov3.JH570468 C 0 I 18453 e micMur3.chr16 35843142 951 - 65901067 I a score=29460.000000 s hg38.chr17_GL383564v2_alt 11745 4 + 133151 TCTC s panTro5.chr17 16205626 4 + 83181570 TCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112983 4 + 83442489 TCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948089 4 + 4267968 TCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926461 4 - 2193130 TCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000389 4 - 77216781 TCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912989 4 - 80997621 TCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969268 4 + 10377808 TCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856365 4 - 8458610 tctc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812687 4 + 75148670 TCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035853 4 + 4244037 tctc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063066 4 + 4569836 TCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029322 4 - 159171411 TTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755520 4 + 3513951 TTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805035 4 + 1920343 TTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916004 4 - 7032639 TTCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926216 4 + 8555354 TACG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727454 4 + 28711273 TCCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014768 4 - 122082543 TACA i mm10.chr11 C 0 C 0 s canFam3.chr9 21343980 4 + 61074082 TACA i canFam3.chr9 C 0 C 0 e micMur3.chr16 35843142 951 - 65901067 I e dasNov3.JH570468 297624 18453 - 852752 I a score=450962.000000 s hg38.chr17_GL383564v2_alt 11749 37 + 133151 TAAATGATAGCCAGGTCCCTAAGCCAAATCTTCC-CCA s panTro5.chr17 16205630 37 + 83181570 TAAATGATAGCCAGGTCCCTAAGCCAAGTCTTCC-CCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16112987 37 + 83442489 TAAATGATAGCCAGGTCCCTAAGCCAAGTCTTCC-CCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948093 37 + 4267968 TAAATGATAGCCAGGTCCCTAAGCCAAGTCTTCC-CCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926465 37 - 2193130 TAAATGATAGCCAAGTCCCTAAGCCAAGTCTTCC-CCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000393 37 - 77216781 TAAATGGTAGCCCGGTCCCTAAACCAAGTCTTCC-CCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27912993 37 - 80997621 TAAATGGTAGCCCGGTCCCTAAACCAAGTCTTCC-CCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969272 37 + 10377808 TAAATGGTAGCCAGGTCCCTAAACCAAGTCTTCC-CCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856369 37 - 8458610 taaaTGGTAGCCAGGTCCCTAAACCAAGTCTTCC-CCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812691 37 + 75148670 TAAATGGTAGCCAGATCCCTAAACCAAGTCTTCC-CTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035857 37 + 4244037 taaaTGGTAGCCAGGTCCCTAAACCAAGTCTTCC-CCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063070 37 + 4569836 TAAATGATAGCCAGGTCCCTAAACCAAGTCTTCC-CCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029326 37 - 159171411 TAAAGAATAGCCAGGTCCCTAAGCCAAGCCTTCC-CCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755524 37 + 3513951 TAAAGAATAGCCAGGTCCCTAAGCCAAGCCTTCC-CCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805039 37 + 1920343 TAAATAATAGCCAGGTCCCTAAGCCAAGCCTTCC-CCC i cebCap1.NW_016107730v1 C 0 I 19 s aotNan1.NW_018502359v1 6916008 37 - 7032639 TAAAGAACAGCCAGGTCCCTAAGCCAAGGCTTCC-CCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926220 38 + 8555354 TAAAGGGTAGCCAGGTCCCTAAGCCGAGTCCCCCACCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727458 37 + 28711273 TAAATGATGGCCAGGTCCCTAAGCCACATCCGCC-CCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014772 37 - 122082543 TAAATGACAGACACGCCCTCTCGTGGCCCCATCC-TCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21343984 19 + 61074082 TAAACAGTAG------------------TCCCCC-CCA i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 316077 23 - 852752 TAATTGCTTGCCAGGTCCCTAAG--------------- i dasNov3.JH570468 I 18453 C 0 e micMur3.chr16 35843142 951 - 65901067 I a score=232221.000000 s hg38.chr17_GL383564v2_alt 11786 17 + 133151 AGGATTCCTGGATGTAG s panTro5.chr17 16205667 17 + 83181570 AGGATTCCTGGATGTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113024 17 + 83442489 AGGATTCCTGGATGTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948130 17 + 4267968 AGGATTCCTGGATGTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926502 17 - 2193130 AGGACTCCTGGATGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000430 17 - 77216781 AGGACTCCTGGATGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913030 17 - 80997621 AGGACTCCTGGATGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969309 17 + 10377808 AGGACTCCTGGATGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856406 17 - 8458610 AGGACTCCTGGATGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812728 17 + 75148670 AGGACTCCTGGATGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035894 17 + 4244037 AGGACTCCTGGATGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063107 17 + 4569836 AGGACTCCTGGATGTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029363 17 - 159171411 AGGTCTCCTGGATGTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755561 17 + 3513951 AGGTCTCCTGGATGTGG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6916045 17 - 7032639 AGGTCTCCTGGATGTGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926258 17 + 8555354 AGGACTCCTGGATGTGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22727495 17 + 28711273 AGGACACCTGGATCTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22014809 15 - 122082543 --GCCTTCAGAACGCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21344004 17 + 61074082 AGGACTCCTGGATGTGG i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 316100 17 - 852752 GGGACTGTTCAGTGTGG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35843142 951 - 65901067 I e cebCap1.NW_016107730v1 1805076 19 + 1920343 I a score=1021383.000000 s hg38.chr17_GL383564v2_alt 11803 78 + 133151 AAAGACACAGATGAG---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCACCC s panTro5.chr17 16205684 78 + 83181570 AAAGACACAGATGAG---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGTTTGTGGCAGGCCCAGCCTTCACCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113041 78 + 83442489 AAAGACACAGATGAG---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCACCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948147 77 + 4267968 AAAGATACAGATGAG---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGCGTGCCTTGTTGGTGGCAGGCCCGGCCTTCA-CC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926519 71 - 2193130 AAAGACACAGATGAG---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTG-------TGTTGGTGGCAGGCCCGGCCTTCGCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000447 77 - 77216781 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGGTGGTGGCAGGCCCAGCCTTCA-CC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913047 77 - 80997621 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGGTGGTGGCAGGCCCAGCCTTCA-CC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969326 77 + 10377808 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCA-CC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856423 77 - 8458610 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-ATCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCA-CC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812745 77 + 75148670 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCA-CC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035911 77 + 4244037 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCA-CC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063124 78 + 4569836 AAAGACACAGATGAA---------A---------GAACTGTTGGTATAGAT-T-CTCTGGTCCGTGTGCCTTGTTGGTGGCAGGCCCAGCCTTCACCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029380 76 - 159171411 AAAG--ACAGATGAG---------A---------GAACTGTTGGTATAAAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCGGCCTTCACCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755578 78 + 3513951 AAAGACACAGATGAG---------A---------GAACTGTCGGTATAAAT-T-CTCTGGTCTGTGTGCCTTGTTGATGGCAGGCCTGGCCTTCACCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805095 78 + 1920343 AAAGACACAGATGAG---------A---------GAACTGTTGGTATAAAT-T-CTCTGGTCTGTGTGCCTTGTTGGTGGCAGGCCCGGCCTTCACCC i cebCap1.NW_016107730v1 I 19 C 0 s aotNan1.NW_018502359v1 6916062 78 - 7032639 AAAGACACAGATGAG---------A---------GATCTGTTGGTATAAAT-T-CTCTGATCGGTGTGACTTGTTGGTGGCAGGCCCGGCCTTCACCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926275 81 + 8555354 AAAGACACAGACGAG------AGCA---------GAACTGTTGGAGTAGAC-C-CTCTGGTCTGTGAGCCTTGTTGGAGGCAGGCTTGGCCTTCGTCC i proCoq1.NW_012135969v1 C 0 I 55 s otoGar3.GL873537 22727512 79 + 28711273 AAAG--ACAGAGGAC------AGCA---------GAGCTGTTGGTGTACAT-C-CTCTGGTCCTTGCGCCGTGTTGGAGGCAGGATTGGCCTCCGTCC i otoGar3.GL873537 C 0 I 3 s mm10.chr11 22014824 88 - 122082543 AATGACACAGATGCT---------AGTAACAGTGGATCTGTCAGCATGGGT-TCCTTTGATTTGTGTGCCTAGTTGATAGCACGCTTCCTGTTCAGTC i mm10.chr11 C 0 I 4 s canFam3.chr9 21344021 85 + 61074082 AGAGACATAGATGAG---------AGTGGAGGAGGAACTGTTCATACAGATAT-CATTGGGCTATATGACT---TGGTGGCAGACCTGTCCTTTACCC i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 316117 86 - 852752 AAATCCACTGATGAGCATAGAAGTA---------GGACTATT--CATAGAT-TTCGTTGGGCTGTGTGATTTGTTGGTGGCAGATCTGTCCTTTGCCT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35843142 951 - 65901067 I a score=501990.000000 s hg38.chr17_GL383564v2_alt 11881 44 + 133151 --TGATCTTACCCTTGTCCATCAATCACTGAGACATCTTTT---TAATG-- s panTro5.chr17 16205762 44 + 83181570 --TGATCTTACCCTTGTCCATCAATCACTGAGACATCTTTT---TAATG-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113119 44 + 83442489 --TGATCTTACCCTTGTCCATCAATCACTGAGACATCTTTT---TAATG-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948224 44 + 4267968 --TGATCTTACCCTTGTCCATGAATCACTGAGACATCTTTT---TAATG-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926590 44 - 2193130 --TCATCTTACCCTTGTCCATCAATCACTGAGATGTCTTTT---TAATG-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000524 44 - 77216781 --TGGTCTTACCCTTGTCCATCAATCACTGAAACATCTTTC---TAATG-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913124 44 - 80997621 --TGGTCTTACCCTTGTCCATCAATCACTGAAACATCTTTC---TAATG-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969403 44 + 10377808 --TGGTCTTACCCTTGTCCATCAATCACTGAAACATCTTTC---TAACG-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856500 44 - 8458610 --TGGTCTTACCCTTGTCCATCAATCACTGAAACATCTTTT---TAATG-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812822 44 + 75148670 --TGGTCTTACCCTTGTCCATCAATCACTGAAACATCTTTT---TAATG-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2035988 44 + 4244037 --TGATCTTACCCTTGTCCATCAATCACTGAAACATCTTTT---TAATG-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063202 44 + 4569836 --TGGTCTTACCCTTGTCCATCAATCACTGAAACATCTTTT---TAATG-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029456 44 - 159171411 --TGGTCTTACCCCTGTCTGTCAATCACTGAGGTGTCTTTT---TCACG-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755656 44 + 3513951 --TGGTCTTACCCTTGTCCGTCAGTCACTGAGGTGTCTTTT---TCACG-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805173 44 + 1920343 --TGGTCTTACCCTTGTCTGTAAATCACTGAGGTGTCTTTT---TCACG-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916140 44 - 7032639 --TGGTCTTACCCTTTTCTGTCAATCACTGAGGTGTCTTTT---TCATG-- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22727594 47 + 28711273 --TGGTCTCATTCTTCTTTGTCAGTCACGGAGACAACTTTTATCTCCTG-- i otoGar3.GL873537 I 3 I 4 s mm10.chr11 22014916 42 - 122082543 --GGGCCTCATTTTTGTCTGTTGACCACTGAAGTATCTTTC-----ATG-- i mm10.chr11 I 4 I 14 s canFam3.chr9 21344108 43 + 61074082 --TGGTCTTGCCCTC-CCTTTGCATCACTGAGACATCTTTT---TAATT-- i canFam3.chr9 I 2 I 9 s dasNov3.JH570468 316203 48 - 852752 TATGGGATTACCCTTTTCCATACATCAAGAGATCTTACTTC---CCATATA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2926356 55 + 8555354 I e micMur3.chr16 35843142 951 - 65901067 I a score=4081572.000000 s hg38.chr17_GL383564v2_alt 11925 305 + 133151 TAACTC-----TTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGTT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCGGTGGGTCTCCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCCGAGTT--------AGGAGATTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCCTCACCTTGCCCAGTCTT--CCTTC----AAGACTAGACTCACT--GAGGCATTTTCCCTAAATCAACCG--GTAGCAGATACTTCCAA-----GGAGTGGCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT s panTro5.chr17 16205806 305 + 83181570 TAACTT-----TTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGTT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACTGGTGGGTCTCCCTCTGGCTATGGAGCCAGCACGGGGAGATGATTCTGAAGGCCCGAGTT--------AGGAGATTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCCTCACCTTGCTCAGTCTT--CCTTC----AAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACCG--GTAGCAGATACTTCCAA-----GGAGTGGCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113163 305 + 83442489 TAACTT-----TTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGTT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACTGGTGGGTCTCCCTCTGGCTATGGAGCCAGCACGGGGAGATGATTCTGAAGGCCCGAGTT--------AGGAGATTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCCTCACCTTGCTCAGTCTT--CCTTC----AAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACCG--GTAGCAGATACTTCCAA-----GGAGTGGCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948268 304 + 4267968 TAACTC-----TTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGTT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCGCCGGTGGGTCT-CCTCTGGCCATGGAGCCAGCACGGGGAGATGATTCTGAAGGCCTGAGTT--------AGGAGATTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCCTCACCTTGCTCAGTCTT--CCTTC----AGGACCAGACTCACT--GAGGCATTTTCCCTAAACCAACTG--GTAGCAGATACTTTCAA-----GGAGTGGCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926634 305 - 2193130 TAACTC-----TTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCGGTGGGTCTCCCTCTGGCCATGGAGCTAGCATGGGGAGATGATTCTGAAGGCCCAAGTT--------AGGAGATTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCCTCAGCTTGCTCAGTCTT--CCTTC----AAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACCG--GTAGCAGACACTTCCAA-----GGAGTGGCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000568 320 - 77216781 TAACTC-TT-TTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCCTGTCCAAGCTGTGGCCCTGTCACCGGTGGGTCTGCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCCGAAGTTCCTGTGCAGGAGGTTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACGG--GTAGCGGACGCTTCCAA-----GGAGTGTCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913168 320 - 80997621 TAACTC-TT-TTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCGGTGGGTCTGCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCCGAAGTTCCTGTGCAGGAGGTTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACGG--GTAGCGGACACTTCCAA-----GGAGTGTCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969447 320 + 10377808 TAACTC-TT-TTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCGGTGGGTCTGCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCCGAAGTTCCTGTGCAGGAGGTTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACGG--GTAGCAGACACTTCCAA-----GGAGTGTCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856544 320 - 8458610 TAACTC-TT-TTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACTGGTGGGTCTTCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCTGAAGTTCCTGTGCAGGAGGTTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAATGG--GTAGCAGACACTTCCAA-----GGAGTGTCTCCC--CGCCTATGCCTCTAAGCTGTATTTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64812866 320 + 75148670 TAACTC-TT-CTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCGGTGGGTCTGCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCCGAAGTTCCTGTGCAGGAGGTTGAGGCT--------GGTTGTACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACGG--GTAGCAGACACTTCCAA-----GGAGTGTCTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036032 320 + 4244037 TAACTC-TT-TTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACTGGTGGGTCTTCCTCTGGCCATGGAGCCAGCATGGGGAGATGATTCTGAAGGCCTGAAGTTCCTGTGCAGGAGGTTGAGGCT--------GGTTGCACTGGGGTCAGGAGGGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAACGG--GTAGCAGACACTTCCAA-----GGAGTGTCTCCC--CGCCTATGCCTCTAAGCTGTATTTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063246 320 + 4569836 TAACTC-TT-CTTCTTTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCAGTGGGTCTCCCTCTGGCCATGGAGCCAGCATGGGCAGATGATTCTGAAGGCCCGAAGTTCCTGTGCAGGAGGTTAAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCCCCTTGCTCAGTCTT--CCTTCCAGAAAGACCAGACTCACT--GAGGCATTTTCCCTAAATCAATGG--GTAGCAGACACTTCCAA-----GGAGTGGTTCCC--TGCCTATGCCTCTAAGCTGTATTTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029500 316 - 159171411 TGACTC-TT-CTTCTCTCTCTCCCTGCAGATTACCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCCATCACCTGTGTACCTCCCTCTGGCCATGGAGCCAGCACGGGGAGATGTCTCTGAAGGCCCGAGTT-CCTGTGCAGG---TTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACTGGACTCACT--GAGGCATTTTGCCTACACCAATGG--GTAGCAGTCACTTCCAA-----GCAGTGGCTCCC--TGTCTATGCCTCTAAGCTGTATTTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1755700 316 + 3513951 TACCTC-TT-CTTCTCTCTCTCCCTGCAGATTACCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCCGTCACCTGTGTACCTCCCTCTGGCCATGGAGCCAGCACGGGGAGATGTCTCTGAAGGCCCGCGTT-CCTGTGCAGG---TTGAGGCA--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAACACTGGACTCACT--GAGGCATTTTCCCTCCATCAATGG--GTAGCAGGCACTTCCAA-----GCAGTGGCTGCC--TGTCTATGCCTCTAAGCCGTATTTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805217 313 + 1920343 TAAC----T-CTTCTCTCTCTCCCTGCAGACTACCCTGCAATCCCTGCT--CCACGCCTGC----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCTGTCACCTGTGTACCGCCCTCTGGCCATGGAGCCAGCACAGGCAGATGTCTCTGAAGGCCCGAGTT-CCTGTGCAGG---TTGAGGCC--------GGTTGCACTGGGGTCAGGAGTGCCATCACCTTGCTCAGTCTT--CCTTCCAGAAAAACTGGACTCACT--GAGGCATCTTCCCTACATCAAAGG--GTAGCAGGCACTTCCAA-----GCAGTGGCTCCC--TGTCTATGCCTCTAAGCTGTATTTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916184 316 - 7032639 TAACTC-TT-CTTCTCTCTCTCCCTGCAGATTACCCTGCAATCCCTGCT--CCACGCCTGT----CTCCTGTACTTCTTGTCCAAGCTGTGGCCCCGTCACCTGTGTACCTCCCTCTGGCCATGGAGCCAGCACGGGGAGATGTCTCTGAAGGCCTGAGTT-CCTGTGCAGG---TTGAGGCT--------GGTTGCACTGGGGTCAGGAGTGCCTTCACCTTGCTCAGTCTT--CCTTCCAGAAAGACTGGACTCACT--GAGGCATTTTCCCTACATCAACAG--GTAGCAGGCACTTCCAA-----GCAGTGGCTCCC--TGTCTGTGCCTCTAAGCTGTATTTCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926411 314 + 8555354 TAACTC-TT-CTTCTCTCTCTCCCTGCAGACTCCCCTGCAATCCCTGCG--CCACACCTGC----CTCCTGTGGCCTTTGTCCTGGCCGCGCCCCCACCACCTGTGCGCCTCCCCCTGCCAGTGGAGCTGGCACCTGGAGCCGATTCTGAAGGTCCGAGGT-CCTGTGCCGGAGGTGAAGGCT--------GGTTTTGCTGGAGTCAGGAGTGCTGTCACCCCGTTGTGTCTT--CCTTCCTGGGAGACCAGACTCACT-GGAGGCATTTTCCCTAAATCACCGA--GCAGCAGGAACTTCCAA-----------GCTTCC--TGTCTGTGTCTTTAAGCTGCACTTTT i proCoq1.NW_012135969v1 I 55 I 8 s otoGar3.GL873537 22727645 298 + 28711273 TAACTC-TG-TCTCTCTCTCTCCCTGAAGACTGCCCTGCAATCCCTGCT--CCACACCTGC----CTCCTGTACCCTTTGTCCGGGCCGTGCCCCCGCCGCCTGTGGGCCTCCCTCTGCCAGTGGAGCTGTCACCTGCAGCCGATTCTGAAGGTCCAAGGT-CTTATGCAGGAGGTGAAGGCT--------GGTTGCACCGGGGTCAGGAGTGCCCTCACCGTGCTTCGT---------------------------CA-GGCGTTATTTTCCTCAAATCAATGG--GTAGCAGATACTTCCAAAGGTGCGGCTGGATTCC--TGTTTGTGTCTTCAAG-TGTACCTT- i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22014972 322 - 122082543 ----TCGTT-CTTTCTTCTCTCCCTGCAGCCTCCCCCACCATCGCCACTGACCGGGACTGCGTGTTTCCTTTGCCTCTCTCTCAAGCTGTGA-CCTGTCAACCACAAGCCCCACTTTGCCTACGGAGACGGTGC-TGGAGATGATGCTGAA-GTCAGGATT-CCAATGCAGG-----GAGGGTATCACGGAGGTGGCGCTGGGGTCATG-GTGTTTCCATCTCCTCCATTCTTAACCTTTTCAAAAGACCAGATTGCCCTGGAGACATTTCTACTAAAATG-CAA--GCAGTAGATGCTTCCAA-----ATATTGGCTTTC--TGTT--AGCCCTTATGCTGTATTTCT i mm10.chr11 I 14 I 8 s canFam3.chr9 21344160 321 + 61074082 TAACTC-T---TCCTCTCTTTTCCGGCAGACTCCCCATCAATCCCTGCT--CTACGGCTGC----TTCCCGTGTCCTTGGGCCAAGCTGTGCCCCTGCCACCTGCAGCCCTCTCTAAGCCAGTGGGACCAGCACTGAGAACCGATTCTGAAGGTCTGCGTT-GCAGTGTGGGAGGTCAAGGCT--------GGTTGCACTGGAGCTAGGATTGTCCTCACC-TGCTTAGTTTT--CCTTCCAGGGAGACCAAACTCACT-GGAGGCATTTTCAATGAGTCAAAAAGTGTGACAGAAACTTCTAA-----GCAGTGGCTCCCTTTGTATGTATCCCTTTGCTGCATTCCA i canFam3.chr9 I 9 C 0 s dasNov3.JH570468 316251 303 - 852752 TGACTT-TTCCCACCTTCTCTCCCT--------CTTTGCAATCTCCTCT--TTACACCTGC----CTCCTGTGCCCGCCTTCCATATGGTGTCCCTGGTGGCTGTGGGCCTCCCTCAGCTTGTGGACTCAGCACTGGGAGCCGATTCTGAAGTTCTAAGTC-CTACTGCAGTAGGTTACAGCT--------GGCTGCATGGGGACCAGGATTACCCTGACCTTGCTTAGTCTT--CCTTCCAGATAAAACAAACCCACT--GGAGGTGTTTCACCAAATCAAAGA----------TGCTTCCAA-----CTAGTGGCTTCC--TGTTTGTGGCT-TAAACTGCCTCTCC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35843142 951 - 65901067 I a score=121520.000000 s hg38.chr17_GL383564v2_alt 12230 13 + 133151 TGTTGTTGCTAAA s panTro5.chr17 16206111 13 + 83181570 TGTTGTTGCTAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113468 13 + 83442489 TGTTGTTGCTAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948572 13 + 4267968 TGTTGTTGCTAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926939 13 - 2193130 TGTTGTTGCTAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000888 13 - 77216781 TGTTGTTGCTGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913488 13 - 80997621 TGTTGTTGCTGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969767 13 + 10377808 TGTTGTTGCTGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856864 13 - 8458610 TGTTGTTGCTGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64813186 13 + 75148670 TGTTGTTGCTGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036352 13 + 4244037 TGTTGTTGCTGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063566 13 + 4569836 TGTTGTTGCTGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029816 13 - 159171411 TGTTGTTGCTGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1756016 13 + 3513951 TGTTGTTGCTGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805530 13 + 1920343 TGTTGTTGCTGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916500 13 - 7032639 TGTTGTTGCTGAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22727943 11 + 28711273 --TTTTTTCTGAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22015302 13 - 122082543 TAATTTGGCAAGA i mm10.chr11 I 8 C 0 s canFam3.chr9 21344481 12 + 61074082 CCCCACCCCCCA- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 316554 5 - 852752 -----TTGCA--- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2926725 8 + 8555354 I e micMur3.chr16 35843142 951 - 65901067 I a score=4752300.000000 s hg38.chr17_GL383564v2_alt 12243 364 + 133151 ATGTTGTAATTATCTTCCATGAAAGCAATTATTT-TTCCTGGTGTCTCTTCTTGGTACTTTTAGTTCTATTCCAGTGTTTCAGAATCTCCAAAAATGTAAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCCTTCCTGCACCAAGTGCTGTCTCCCCGGTG-TTGGT--TGTATGTGAGATGTCGG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCTCTGACA-----TCTTGCTTCCAGGAGCTCCCTGGGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCCTTCCTGATGTTGGATGTGTATTCACCTTTCCCAGGGATCCCTATAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGA s panTro5.chr17 16206124 364 + 83181570 ATGTTGTAATTATCTTCCATGAAAGCAATTATTT-TTCCCGGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCTAGTGTTTCAGAATCTCCAAAAATGTAAC-TGGGTTCCCTGCATTAAGTGGTCAATAAACCTCCTTCCTGCACCAAGTGCTGTCCCCCCGGTG-TTGGT--TGTATGTGAGATGTCGG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCTCTGACA-----TCTTGCTTCCAGGAGCTCCCTGGGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCCTTCCTGATGTTGGATGTGTATTCACCTTTCCCAGGGATCCCTATAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113481 364 + 83442489 ATGTTGTAATTATCTTCCATGAAAGCAATTATTT-TTCCCGGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCTAGTGTTTCAGAATCTCCAAAAATGTAAC-TGGGTTCCCTGCATTAAGTGGTCAATAAACCTCCTTCCTGCACCAAGTGCTGTCCCCCCGGTG-TTGGT--TGTATGTGAGATGTCGG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCTCTGACA-----TCTTGCTTCCAGGAGCTCCCTGGGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCCTTCCTGATGTTGGATGTGTATTCACCTTTCCCAGGGATCCCTATAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948585 359 + 4267968 ATGTTGTAATTATCTTCCATGAAAGCAATTATTT-TTCCCGGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCAAAAATGTAAC-TGGGTTCCCTGCATTAAATGGTCAATAAA---CCTTCCTGCACCAAGTGCTGTC-CCCCGGTG-TTGGT--TGCATGTGAGATGTCGG-AGAATCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCTCTGACA-----TCTTGCTTCCA-GAGCTCCCTGGGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCCTTCCTGATGTTGGATGTGTATTCACCTTTCCCAGGGATCCCTATAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1926952 363 - 2193130 TTGTTGTAATTATCTTCCATGAAAGCGATTATTT-TTCCCGGTGTCTCTTCTTAGTTCTTTTGATTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTAAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCCTTCCTGCACCAAATGCTGTC-CCCCCGTG-TTAGT--TGTATGTGAGATGTTGG-AGAGTACTTGTCGTCAGGTCCT-GTGTCCTCACTGGCTCTGACA-----TCTTGCTTCCAGGAGCTCCCTGGGGTGGTC----TGG----G------GCCTCTGGATGAAGGTCCTCTCCTGACATTGGATGTGTATTCACCTTTCCCAGGGATCCCTATAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30000901 364 - 77216781 ATGTTATAATTATCTTCCACGAAAGTGATTGTTT-TTCCCAGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTCCTGCACCAAGTGCTGTCCCCCTGGTG-TTGGT--TGTGTGTGAAGTGTCAG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTAGTTGCCAAGTTTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913501 364 - 80997621 ATGTTATAATTATCTTCCACGAAAGTGATTCTTT-TTCCCAGTGCCTCTTCTTGGTTCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTCCTGCACCAAGTGCTGTCCCCCTGGTG-TTGGT--TGTGTGTGAAGTGTCAG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTAGTTGCCAAGTTTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1969780 364 + 10377808 ATGTTATAATTATCTTCCACGAAAGTGATTCTTT-TTCCCAGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTCCTGCACCAAGTGCTGTCCCCCTGGTG-TTGGT--TGTGTGTGAAGTGTCAG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTAGTTGCCAAGTTTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1856877 364 - 8458610 ATGTTGTAATTATCTTCCACGAAAGTGATTCTTT-TTCCCAGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTCCTGCACCAAGTGCTGTCCCCCTGGTG-TTGGT--TGTGTGTGAAGTGTCAG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCCC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTAGTTGCCAAGTTTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64813199 364 + 75148670 ATGTTGTAATTATCTTCCATGAAAGTGATTCTTT-TTCCCAGTGTCTCTTCTTGGTCCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTCCTGCACCAAGTGTTGTCCCCCTGGTG-TTGGT--TGTATGTGAAGTGTCAG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTAGTTGCCAAGTTTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036365 364 + 4244037 ATGTTGTAATTATCTTCCATGAAAGTGATTCTTT-TTCCCAGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTTCTGCACCAAGTGCTGTCCTCCTGGTG-TTGGT--TGTGTGTGAAGTGTCAG-AGAGTCCTGGTCGTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTAGTTGCCAAGTTTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063579 364 + 4569836 ATGTTGTAATTATCTTCCATGAAAGTGATTCTTT-TTCCCAGTGTCTCTTCTTGGTTCTTTTGGTTCTATTCTAGTGTTTCAGAATCTCCTAAAATGTCAC-TGGGTTCCCTGCATTAAATGGTCAATAAACCTCTTTCCTGCACCAAGTGCTGTCCCCCTGGTG-TTGGT--TGTATGTGAAGTGTCAG-AGAGTCCTGGTCTTCAGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTTGCTTCCAGGAGCTCCCTGCGGTGCTC----TGG----G------GCCTCTGGATGAAGGTCCTTTCCTGACATTGGATGTGTATTCACCTTGCCCAGGGATCCCTACAGA-CTGGTGGAAGGAA---GTGATGCTCGTTGCCAAGTTTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46029829 356 - 159171411 ATGTCGTAATTACCTGCCATGAAGGCGATTATTT-TTCCCAGTGTCTCTT-------CGGTTGGCTCTGTACCAGTGTTTCAGAATCTCCTAAAATGTAAC-CGGGCTCCCTGCATTAAATGGTCAATAAACCTCCTTCCTGTATCAAGTGCTATCCCCCCGGTG-TTGGC--TGT-TGTGAGGTGTCAG-AGAGTCCTGGTCGTCTGGTCCC-GTGTCCTCACTGGTCCTGACG-----TCTTGCCTCCAGGAGCTCCCTGGGGTGTTC----TGG----G------GCCTCTGGATAAAGGCCCTTTCCTGACATTGCATGTGTACTCACCTTGCCCAGGGATCCCTGTAGA-CTAGTCCAAGGAA---GTGATGCCAGTTGCCAAGTTTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1756029 357 + 3513951 ATGTCGTAATTATCTTCCATGAAAGCAATTATTT-TTCCCAGTGTCCCTT-------CTTTTGGCTCTACTCCAGTGTTTCAGAATCTCCTAAAATGTAAC-TGGCCTCCCTGCATTAAATGGTCAATAAACCTCCTTCCTGTATCAAGTGCTTTCCTGCCGGTG-TTGGC--TGTATGTGAGGTGTCAG-AGAGTCCTGGTCATCTGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTCACTTCCAGGAGCTCCCTGGGGTGCTC----TGG----G------GCCTCTGGATAAAGGTCTTTTCCTGACATTGCGTGTGTACTCACCTTGCCCAGGGATCCCTGTAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805543 353 + 1920343 ATGTCATAATTATCTTCCATGAAAGTGATTATTT-TTCCCAGTGTCCCTT-------CTTTTGGCTCAATTCCAGTGTTTCAGAATCTCCTAATATGTAAC-TGGCCTCCCTGCATTAAATGGTCAATAAACC----TCCTGTATCAAGTGCTATCCCCCCGGTG-TTGGC--TGTATGTGAGGTGTCAG-AGAGTCCTGGTTGTCTGGTCCT-GTGTCCTCACTGGCCCTGACG-----TCTCACTTCCAGGAGCTCCCTGGGGTGCTC----TGG----G------GCCTTTGGATAAAGCCCCTTTCCTGACATTGCATGTGTACTCACCTTGCCCAGGGATCCCTGTAGA-CTGGTGGAAGGAA---GTGGTGCCACTTGCCAAGTTTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916513 355 - 7032639 ATGTTGTAATTATCTTCCATGAAAGCGATTATTT-TTCCCAGTGT--CTT-------CTTTTGGCTCTATTCCAGTGTTTCAGAATCTCCTAAAATGTAAC-TGGGCTCCCTGCATTAAATGGTCAATAAACCTCCTTCCTGTATCAAGTGCTATCCCCCTGGTG-TTGGC--TGTATGTGAGGTGTCAG-AGAGTCCTGGTCGTCTGGTCCT-GTGTCCTCACTGGCCCTGACA-----TCTCGCTTCCAGGAGCTTCCTGGGGTGCTC----TGG----G------GCCTCTGGATAAAGGCCCTTTCCTAACATTGCATGTGTACTCACCTCGCCCAGGGATCCCTGTAGA-CTGGTGGAAGGAA---GTGATGCCAGTTGCCAAGTTTGC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2926733 365 + 8555354 GTGTTGTCATTGTCTTCCACTGATGCTATTGTTT-TCCCCAGTGTCACTTCTGGGTTCTTTTGGTTCTATTTCAGTGTTTCAGAATCTCCTAAAATGTAGCTTGGCT--CCTGTGTTCAATGGTCAATAAACCTCCTTCCTGTATCAAGTGC---ATCCCT-GTG-TTGGC--TGTGCGTAGGTGTGCTG--GAGTCCTGGCCCTCAGGTCCTTGTGTCCTCACTGGTCCTGACA-----AGTTGCCACCAGGAGCT-CTTGGGGTGCTGGGGTCTA----A------GCCTCCAGGTGGAGGCCCTTTCCTGACATTGGACATGCAGTTACCGTGCCCAGGGATCCCTAAAGA-CTGGTGAAAGGAAGTGGTGATGCCAGCTGCCAAGTTTGA i proCoq1.NW_012135969v1 I 8 C 0 s otoGar3.GL873537 22727954 335 + 28711273 ATGCCGTCATTCTCTTCCACTG--GCTATTGTTT-T-CCCAGTGTCACTTCTGGGTTCTTTCAGTTCTATTTTAGTGTTTCAGAATCTCCTAAAATGTAAC-TGGCT--CTTGTGCTAAATGGTCAATAAA---CCTTCCTGTATCAAGTGC---CTCTGTGGTG-TTGGC--TGCGTGTGAGGGG-----------CTGGCCCTTCTGTCCTCGTGTCCTCATTGGTCCTGAAG-----AATCACCGCCAGGAGCT-CTTGGCGTGCTG-------------------------GGTGGAGGCACTTTCCTAACATTGAACATGTACTTACCTTGCCCAGAGATCCCTAGAGA-CTGGTGAAAAGAAGTGGTGATGCCAGCTGCCAAGTCTGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22015315 311 - 122082543 ---GTGTCGTTATCTTCCGTTAAAGCTCACATTG-TTCTCAGTGTCTCTTCTGGG--GTTTGGGTTCTAGTCCATTGTCCCAGAGATTTTTAAGATGCGAC-TGTGCG-CCTGCTTCACGTGGACCGCCACCCACCGTGC-ACGTCAGTTGCTGTTATTTTGGTG-TTGCT-CTTCATGTGG----------------TGGTCTTCAAGTTGTTGGATCCTCATTGGCCTTGCCA-----CATTACTGC----AGCT--------GGGTC----TTA----A------GTCCCTGGGAGAATGCTCTTTCCTGACTCTCGGTGTG----CACTTTGCCTGTAGTTCCCCA---------------------ACGACTCCTGTTGCCAGGCTCGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21344493 375 + 61074082 ATGCTGTAATTGTCTTTCACCTAAGCTATTGTTTGCTCCCAGTACCTCTTCTGGG--ATTTTGGTTCTACTCCAGTGCTTCAAACTCTCCTAAGATGTAAT-TGGGTT-CCTGTACCAAATGGTGAATAAAACTCCTTCCTGCATTAAGTGCTATACTTCTTGTGCTTGGCAATGTATGTGATGTGATAA-AGAGCTCTGGCCTTCGAGACCTTGGGTGGTCATTGGCTCCAACATGCCTTGTTGTTGCCAGGATCTCTCTAGGGCCCTA----GGGTCTTA------GCCCCTGGGTGAAGGCCCTTTGCTGACATTGGATGTGTACTTACCTTGCCCATTGATCCCTGTAGA-CTGGTGAAAGGAA---GCTGTGTTGTTTGCCCGGTTTGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 316559 360 - 852752 ATGGTATAATTGTCTTCCACTTGAGTTACTGTTT-TTCCTAGTGTGTCTTCTGGG---ATTCAATTCTACTCTAGTGCTTCAGAGTCTCCTAAAATGTAAC-CGAGCT-CCTGTATTAAATAGTCAATAAGTCTTCTTTCTATATCAAGCAATATCCTTCTGTTGTTTGGC--AGTATGTGCGGTATGAAAAGAGTCCTGGCTTGGAAGTAAT-AGGCCATGATAG---CTGACA-----TGTTGCTACCAGGAACATTCTGGGG--CTC----TGG----GATCATTGCCCCTGGAAGAAGTTGCTTTCCTGACTTTGGATGTGTACTCAATTTGCCTA----TCTCTATAGACCTCGTGAAAGGAG---TTAATGCTGATTGCCAAGTTTGA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35843142 951 - 65901067 I a score=981078.000000 s hg38.chr17_GL383564v2_alt 12607 55 + 133151 ATTCTTTCAGAACAGCTCAGAGCTAACATGTCCCTACCATGCTTTTGGCATCTTC s panTro5.chr17 16206488 55 + 83181570 ATTCTTTCAGAACAGCTCAGAGCTAACATGTCCCTACCTTGTTTCTGGCATCTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113845 55 + 83442489 ATTCTTTCAGAACAGCTCAGAGCTAACATGTCCCTACCTTGTTTCTGGCATCTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948944 55 + 4267968 ATTCTTTCACAACAGCTCAGAGCTAACATGTCCCTACCATGTTTTTGGCATCTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1927315 55 - 2193130 ATTCTTTCAGAACAGCTCAGAGCTAACATGTCCCTACCATGCTTTTGGCATCTTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30001265 55 - 77216781 ATTCTTTCAAAACAACTCAGAGCTAACATGTCCCTACCATGATTTTGGCATCTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913865 55 - 80997621 ATTCTTTCAAAACAACTCAGAGCTAACATGTCCCTACCATGATTTTGGCATCTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1970144 55 + 10377808 ATTCTTTCGAAACAACTCAGAGCTAACATGTCCCTACCCTGATTTTGGCATCTTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1857241 55 - 8458610 ATTCTTTCAAAACAACTCAGAGCTAACATGTCCCTACCATGATTTTGGCATCTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64813563 55 + 75148670 ATTCTTTCAAAACAACTCAGAGCTAACATGTCCCTACCATGATTTTGGCATCTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036729 55 + 4244037 ATTCTTTCAAAACAACTCAGAGCTAACATGTCCCTACCATGATTTTGGCATCTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063943 55 + 4569836 ATTCTTTCAAAACAACTCAGAGCTAACATGTCCCTACCATGCTTTTGGCATCTTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46030185 52 - 159171411 ATTCTTTC---ACAGCTCAGTGCTAACATGCCCCTACCATGCTTTTGGCATCTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1756386 55 + 3513951 ATTCTTTCAGAACAGCTCCGCGCTAACATGCCTCTACCATGCTTTTGGCATCTTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805896 55 + 1920343 ATTCTTTCAGAACAGCTCAGCGCTAACATGCCCCTACCATGCTTTTGGCATCTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916868 55 - 7032639 ATTCTTTCAGAACAGCTCAGCGCTAACATGCCCCTACCATGCTTTTGGCATCTTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35844093 53 - 65901067 ATTCTTTCAG-ACAGCTCAGAACTAACATGTCCCTGCCATGC-TTTGGCATCTTC i micMur3.chr16 I 951 T 24033 s proCoq1.NW_012135969v1 2927098 55 + 8555354 ATTCTTTCAGAACAGCTCGGAACTAACATGTCCCTACCATGCTTTTGGCATCTTC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22728289 55 + 28711273 ATTCTTTCACAACAGCTCAGAACCGACATGTCCCTACCATGGTTTTGGCACCTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22015626 55 - 122082543 ATTCCTTCAGAACAGCTAAGAACTAACATGTCCCTACCGTGCTTTTGGCATCTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21344868 55 + 61074082 ATTCCTTCAGAACAGCTCAGAACGAACATGTCCCTACCATGCTTTTGGCACCTTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 316919 55 - 852752 ATTCCTTCACAACAACTCAGAACCAACGTGTCTCTACTGTGCTTTTGGCAACGTC i dasNov3.JH570468 C 0 C 0 a score=2018561.000000 s hg38.chr17_GL383564v2_alt 12662 116 + 133151 AGCCTCTTGTTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATATCGTCAAAGGAA----GGTCGTGTTGAGAATTGTCTGAGCCAAGTTGCCAAG--TTTTTCCTCTCACTC s panTro5.chr17 16206543 116 + 83181570 AGCCTCTTGTTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCTCGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGAGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16113900 116 + 83442489 AGCCTCTTGTTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCTCGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGAGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3948999 115 + 4267968 AGCCTCATGTTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCT-GTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGAGCCAGGTTGCCAAG--TTTTTCCTCTCACTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1927370 116 - 2193130 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCATTTAGCATTCTAATCTCGTCAAAGGAA----GGTCATGTTGAGAATTGCCTGAGCCAAGTTGCCAAG--TTTTTCCGCTCACTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30001320 116 - 77216781 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCACTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27913920 116 - 80997621 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCGTTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1970199 116 + 10377808 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCGTTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1857296 116 - 8458610 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCGTTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTAGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64813618 116 + 75148670 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGTGTTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036784 116 + 4244037 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTCGCGTTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2063998 116 + 4569836 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCGTTCTAATCTTGTCAAAGGAA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAG--TTTTTCCTCTCACTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46030237 116 - 159171411 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCTCATCGAAGGGA----GGTCATGTTGAGAATTGCCTGGGCCAAGTTGCCAAA--TTTTTCCTCTCACTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1756441 116 + 3513951 AGCCTCTTGGTATGTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCTCATCAAAGGGA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCAAA--TTTTTCCTCTTACTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1805951 116 + 1920343 AGCCTCTTGGTATTTTCTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCTCATTGAAGGGA----GGTCGTGTTGAGAATTGCCTGGGCCAAGTTGCCGAA--TTTTTCCTCTCACTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6916923 116 - 7032639 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACATCACTTAGCATTCTAATCTCGTCGAAGGGA----GGTCGTGTTGAGAATTGCCTGCGCCAAGTTGCCAAA--TTTTTCCTCTCACTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35820113 118 - 65901067 GGCCTCTTGGTATTCCGTCCAAGAGCAAAATCACACACCACGTAGAGTTCCAATCTAGCCAAACGGA----GGTCATGTTGAGAGCTGCCTGGGCCAAGTTGCCAAG--CTCTTTCTCTCACTC i micMur3.chr16 T 24033 I 24822 s proCoq1.NW_012135969v1 2927153 118 + 8555354 AGCCTCTTGGTATTTTGTCCAAGAGCAAAATCACACACAACTTAGAGTTCCAATCTAGCCAAAGGGA----GGTCGTGTTGAGAACTGCCTGGGTCAAGTTGCCAAG--CTGTTTCTCTCACTC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22728344 116 + 28711273 GGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CGCACCACTGGGGGTTCCAACCTAGTCAAAGAGA----GAGCATGTTGAGAACTGCTTGGGCCACGTTTCCAGG--CTGTTCTTCTCTCTC i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22015681 120 - 122082543 GGCCTCTTGGTATTTTATCCGAGAGCAAACT--CAGCCCTCTTAGAGATCCAGTTTAGTTAAAAGGAGCTTGGTCATGTTGAGAATTGCTTTGACCGAGTTGCCAAG--TTTTATCTCTCATTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21344923 118 + 61074082 AGCCTCTTGGTATTTTGTCCAAGAGCAAAAT--CACACAACTTAGAGTTCCAATCTAGCCAAAGGGA----GGTCATGCTGAGAACTGCCATGGCCAGGTAGCCAAGTTTTTTTCCTCTCATTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 316974 112 - 852752 --TGTCTCAGTATTTTGTCCAAGAGCAAAAT--CATA-CACTTAGAATTCCAATCTAGTCAAAGAGA----GGTCATGTTGAGAATTGCCTTGGCCATGGTGCCAAG--TTTTTG-TCTCATTC i dasNov3.JH570468 C 0 C 0 a score=593106.000000 s hg38.chr17_GL383564v2_alt 12778 44 + 133151 CAGTTGG-CC-CCTTTCATGGAGCCATGGAATTCTCGCCCACTCTC s panTro5.chr17 16206659 44 + 83181570 CAGTTGG-CC-CCTTTCATGGAGCCATGGAATTCTCGCCCACTCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114016 44 + 83442489 CAGTTGG-CC-CCTTTCATGGAGCCATGGAATTCTCGCCCACTCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3949114 44 + 4267968 CAGTTGG-CC-CCTTTCATGGAGCCATGGAATTCTCGCCCACTCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1927486 44 - 2193130 CAGTTGG-CC-CCTTTCACAGAGCCATGGAATTCTCTCCCACTCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30001436 44 - 77216781 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914036 44 - 80997621 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1970315 44 + 10377808 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1857412 44 - 8458610 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64813734 44 + 75148670 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036900 44 + 4244037 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2064114 44 + 4569836 CAGTTGG-CC-CCTTTCACGGAGCCATGGAGTTCCCGCCCACTCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46030353 44 - 159171411 AAGTTGG-CT-CCTTTCACGGAGGCATGGAATTCCCACCCACTCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1756557 44 + 3513951 CAGTTGG-CT-CCTTTCATGGAGGCATGGAATTCTCACCCACTCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1806067 44 + 1920343 AAGTTGG-CT-CCTTTCACAGAGGCATGGAATTCCCACCCACTCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6917039 44 - 7032639 AAGTTGG-CT-CCTTTCATGGAGGCATGGAATTCCCACCCACTCTC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2927271 45 + 8555354 ACATTGGCCC-CCTTTCATGGAGGCATGCCATTCCTGCCCACTCTC i proCoq1.NW_012135969v1 C 0 I 2888 s otoGar3.GL873537 22728461 34 + 28711273 AGGTTGG-CC-CTTTTCACAGAGGCATA--------GGCCTCTC-- i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22015801 33 - 122082543 AGATTGG-CC-CCTGTCACAGAAGCATGAAATTCC----------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21345041 42 + 61074082 -AATTTG-GC-CCTTTTACGGAGGCATGGAATTACCACCTGCTCT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 317086 45 - 852752 AGATTGG-CCTCTTTTCACAGAGGCATGGAATTCCTGCCTGCTCTC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35820231 24822 - 65901067 I a score=9229312.000000 s hg38.chr17_GL383564v2_alt 12822 809 + 133151 CCAAATGCAGAGGCCCA-GATTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGGCACTTCT-----AGGCTTTAGTTTTCTCTAGAGAGATGCTGCCACTGATGTTTCTGT-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCGGTGAGGGCTGCCGCTGCCATCAGAGCACTCCAAGTCCCTGCCTGCCTCTCAGATGTGGCTTTGGCACTGGCCAAGGTGGTTCACAGCCAGATGCAGTTATAA-GCAGGTGGAGGAGCAGCCCA-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTGTGTCCAGAAGAATGAAACTCTTGGGTCTCAGCTTGTCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCATggtggcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttgggttcaaatcccaccttg-gtgactctgaagtgggatttgaacccaccttgctgagtgaagttggccag-gtcactgcatt------ctcttgagacctattccttgtttgtggaagtaggatagttgtatttccctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatattggtttattGGGGCTCCCTAGGAACCAGCAGGTACAATCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGA-TTCTACGTTGGTGGCTGGAAAGTTTGGCCATATTCCTTGTTCATGTACATGCAATAAT s panTro5.chr17 16206703 808 + 83181570 CCAAATGCAGAGGCCCA-GATTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGGCACTTCT-----AGGCTTTAGTTTTCTCTAGAGAGATGCTGCCACTGATGTTTCTGT-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCCGTGAGGGTTGCCGCTGC-ATCAGAGCACTCCAAGTCCCTGCCTGCCTCTCGGATGTGGCTTTGGCACTGGCCAAGGTGGTTCACAGCCAGATGCAGTTATAA-GCAGGTGGAGGAGCAGCCCA-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTGTGTCCAGAAGAATGAAACTCTTGGGTCTCAGCTTGTCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCATggtggcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttgggttcaaatcccaccttg-gtgactctgaagtgggatttgaatccaccttgctgagtgaagttggccag-gtcactgcatt------ttcttgagacctattccttgtttgtggaagtaggatagttgtatttccctgtcactgtggttga----ggggtaatgcatctaacgttcctggcatctagaaggtgttcagtggatattggtttattGGGGCTCTCTAGGAACCAGCAGGTACAATCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGA-TTCTACGTTGGTGGCTGGAAAGTTTGGCTATATTCCTTGTTCGTGTACATGCAATAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114060 808 + 83442489 CCAAATGCAGAGGCCCA-GATTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGGCACTTCT-----AGGCTTTAGTTTTCTCTAGAGAGATGCTGCCACTGATGTTTCTGT-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCCGTGAGGGCTGCCGCTGC-ATCAGAGCACTCCAAGTCCCTGCCTGCCTCTCGGATGTGGCTTTGGCACTGGCCAAGGTGGTTCACAGCCAGATGCAGTTATAA-GCAGGTGGAGGAGCAGCCCA-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTGTGTCCAGAAGAATGAAACTCTTGGGTCTCAGCTTGTCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCATggtggcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttgggttcaaatcccaccttg-gtgactctgaagtgggatttgaacccaccttgctgagtgaagttggccag-gtcactgcatt------ttcttgagacctattccttgtttgtggaagtaggatagttgtatttccctgtcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatattggtttattGGGGCTCTCTAGGAACCAGCAGGTACAATCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGA-TTCTACGTTGGTGGCTGGAAAGTTTGGCCATATTCCTTGTTCGTGTACATGCAATAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3949158 806 + 4267968 CCAAATGCAGAGGCCCA-GATTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGGCACTTCT-----AGGCTTTAGTTTTCTCTAGAGAGATGCTGCCACTGATGTTTCTGT-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCGGTGAGGGCTGCCCCTGCCATCAGAGCACTCCAAGTCCCTGCCTGCCTCTCGGATGTGGCTTTGGCACTGGCCAAGGTGGTTCACAGCCAGATGCAGTTATAA-GCAGGTGGAGGAGCAGCCCAGGAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTGTGTCCAGAAGAATGAAACTCTTGGGTCTCAGCTTGTCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCATggtggcatagtgtggt-ag--aggtggatcttct-ctagggccagggaaacttgggttcaaatcccaccttg-gtgactctgaagtgggatttgaacccaccttgctgagtgaagttggccag-gtcactgcatt------ctcttgagacctattccttgtttgtggaagtaggatagttgtatttccctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatattggtttattGGGGCTCCCTAGGAACCAGCAGGT----TTTCTCTCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGA-TTCTACGTTGGTGGCTGGAAA-TTTGGCCATATTCCTTGTTCATGTACATGCAATAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1927530 810 - 2193130 CCAAATGCAGAGGCCCA-GATTGGGCACTGGAGACT-GGGATCTTGGTCCTGGGTCACTTCT-----AGGCTTTAGTTTTCTCTAGAGAGAtgctgccactgatgtttctgc-tgtctattctgctgctgtcttggaggtgctggcagtgagggctgctgctgcCATCAGAGCACTCCAAGTCCCTGCCTTCCTCTTGGATGTGGCTCTGGCACTGGCCAAGGTGGTTCACAGCCAGACGCGGTTATAA-GCAGGTGGAGGAGTAGCCTG-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----TGGCAAGCACCAAGTGTGTCCAGAAGAATGAAACTCTTGGGTCTCAGCTTGTCCATGTGCCCTGGTGCAAAGAGCAATGAACAACTG------------------------------------------------------------------------------GTCCTTCTTCATggtggcatagtgtggg-gg--aggtggatcttct-ctagggtcagggaaacttgggttcaaatcccaccttg-gcgactctgaagtgggatttgaacccaccttgctgagtgaagttggccag-gtcactgcatt------ctcttgagacctattccttgtttgtggaagtaggatagttgtacttccctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgttggtttattGGGGCTCCCTAGGAACCAGTAGGTACAGTCTCT-TCCTCTCAG------AGAGAAAAAGGAGCTGAAGAGGTAGTAGCAGAACCCATTCTGAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTACATTGGTGGCTGGGAAGTTTGGCCATACTCCTTGTTCATGTACACGCAGTAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30001480 810 - 77216781 CCAAATGTAGAGGCCCA-GACTGGGCACTGGAGACT-GGGGTCTTGGTCTTGGGTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATATATCTGC-TGTCTATTCTGCTGCTGTCTTGGAGATGCTGGTGGTGAGGGCTGCTGCTGCCATTAGAGCACTCCAACTCCGTGCCTGCCTCTCGGATGTGGCTCTGGCACAGGCCGAGGTGGTTCACAGCCAGACGAGGTTATGA-GCAGGTGGAGGAGCAGCCCG-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTATGTCCAGAAGAATGAAACTCTTGGGTCTCAGGTCATCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCGTggtagcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttggattcaaatcccaccttc-gtgactctgaagtgagatttgaacccaccttgctgagtgaagttggccag-gtcgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttacctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgttggtttattGAGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGTCATACTCCTTGTTCATGTATACGCAGTAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914080 810 - 80997621 CCAAATGTAGAGGCCCA-GACTGGGCACTGGAGACT-GGGGTCTTGGTCTTGGGTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATATATCTGC-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGTGGTGAGGGCTGCTGCTGCCATTAGAGCACTCCAACTCCGTGCCTGCCTCTCGGATGTGGCTCTGGCACAGGCCGAGGTGGTTCACAGCCAGACGAGGTTATGA-GCAGGTGGAGGAGCAGCCCG-GAGAGGC--TGC-TGCCTCCCGCCCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTATGTCCAGAAGAATGAAACTCTTGGGTCTCAGGTCATCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCGTggtagcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttggattcaaatcccaccttc-gtgactctgaagtgagatttgaacccaccttgctgagtgaagttggccag-gtcgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttacctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgttggtttattGAGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGTCATACTCCTTGTTCATGTATACACAGTAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1970359 810 + 10377808 CCAAATGTAGAGGCCCA-GACTGGGCACTGGAGACT-GGGGTCTTGGTCTTGGGTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATATATCTGC-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGTGGTGAGGGCTGCTGCTGCCATTAGAGCACTCCAACTCCGTGCCTGCCTCTCGGATGTGGCTCTGGCACAGGCCGAGGTGGTTCACAGCCAGACGAGGTTATGA-GCAGGTGGAGGAGCAGCCCG-GAGAGGC--TGC-TGCCTCCCGCGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTATGTCCAGAAGAATGAAACTCTTGGGTCTCAGGTCATCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCGTggtagcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttggattcaaatcccaccttc-gtgactctgaagtgagatttgaacccaccttgctgagtgaagttggccag-gtcgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttacctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgttggtttattGAGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGTCATACTCCTTGTTCATGTATACGCAGTAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1857456 810 - 8458610 CCAAATGTAGAGGCCCA-GACTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGTCACTTCC-----AGGCTGTAGTTTTCTCCAGAGAGACGCTGCCACTGATATATCTGC-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCGGTGAGGGCTGCTGCTGCCATTAGAGCACTCCAACTCCGTGCCTGCCTCTCCGATGTGGCTCTGGCACAGGCCGAGGTGGTTCTTAGCCAGACGCGGTTATGA-GCAGGTGGAGGAGCAGCCCG-GAGAGGC--TGC-TGCCTCCCGCGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTATGTCCAGAAGAATGAAACTCTTGGGTCTCAGGTCATCCGTGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCGTggtagcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttggattcaaatcccaccttc-gtgactctgaagtgagatttgaacccaccttgctgagtgaagttggccag-gtcgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttacctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgtcggtttattGAGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGACAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGTCATACTCCTTGTTCATGTATACGCAGTAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64813778 810 + 75148670 CCAAATGTAGAGGCCCA-GACTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATGTGTCTGC-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCGGTGAGGGCTGCTGCTGCCATTAGAGCACTCCAAGTCCCTGCCTGCCTCTCGGATGTGGCTCTGGCACAGGCCAAGGTGGTTCACAGCCAGACGCGGTTATGA-ACAGGTGGAGGAGCAGCCCG-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTATGTCCAGAAGAATGAAACTCTCGGGTCTCAGGTCATCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTCGTggtagcatagtgtggt-gg--aggtggatcttct-ctagggtcagggaaacttggattcaaatcccaccttc-atgactctgaagtgagatttgaactcactttgctgagtgaagtcggccag-gtcgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttaccgctcattgtggttga----cgggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgttggtttattGAGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGTCATACTCCTTGTTCATGTATATGTGGTAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2036944 810 + 4244037 CCAAATGTAGAGGCCCA-GATTGGGCACTGGAGACT-GGGGTCTTGGTCCTGGGTCACTTCC-----AGGCTGTAGTTTTCTCCAGAGAGACGCTGCCACTGATATATCTGC-TGTCTATTCTACTGCTGTCTTGGAGGTGCTGGTGGTGAGGGCTGCTGCTGCCATTAGAGCACTTCAACTCCGTGCCTGCCTCTCGGATGTGGCTCTGGCACAGGCCGAGGTGGTTCATAGCCAGACGCGGTTATGA-GCAGGTGGAGGAGCAGCCCG-GAGAGGC--TGC-TGCCTCCCGTGCCATGCTAG-----TCAGTTTA-----CGGCAAGCACCAAGTATGTCCAGAAGAATGAAACTCTTGGGTCTCAGATCATCCATGTGCCCTGGTGCAAAGAGCAATGAAAAACTG------------------------------------------------------------------------------GTCCTTCTTTGTggtagcatagtgtggt-gg--agatggatcttct-ctagggtcagggaaacttggattcaaatcccaccttc-gtgactctgaagtgagatttgaacccaccttgctgagtgaagttggccag-gtcgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttacctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtggatgttggtttattGAGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGCATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGTCATACTCCTTGTTCATGTATACGCAGTAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2064158 816 + 4569836 CCAAATGTAGAGGCCCA-GACTGGGCACTGGAGCCT-GGGGTCTTGGTCCTGGGTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATGTGTCTGC-TGTCTATTCTGCTGCTGTCTTGGAGGTGCTGGCGGTGAGGGCTGCTGCTGCCATTAGAGCACTCCAAGTCCCTGCCTGCCTCTCGGATGTGGCTCTGGCACAGGCCGAGGTGGTTCACAGCCAGACGTGGTTATGA-GCAGGTGGAGGAGCAGCCTG-GAGAGGC--TGC-TGCCTCCCACGCCATGCTAG-----TTAGTTTA-----TGGCAAGCACCAAGTATGTCCAGAagaatgaaactcttggttctcaggtcatccatgtgccctggtgcaaagagcaatgaaaaactg------------------------------------------------------------------------------gtccttctttgtggtagcatagtgtGGT-GG--AGGTGGATCTTct-ctcgggtcagagaaacttggattcaaatcccaccttc-gtgactctgaagtgagatttgaacccaccttgctgagtgaagttggccag-gttgctgcact------ctcttgagacctattcctcgtttgtggaagtaggatagttgtatttacctctcactgtggttga----ggggtaatgcatctaatgttcctggcatctagaaggtgttcagtagatgttggtttattGAGGCTCCCCGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAGAGAGAAAGAGAAAAAGGAGCTGAAGAGATAGTAGCAGAACCCACTCTCAGTATC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGCCATACTCCTTGTTCGTGTATACGCAGTAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46030397 886 - 159171411 CCAAATGTAGAGGCCCA-GATTTGGCACTGGAGACCAGGGGTCTTCGTCCTGGTTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGATGCTGCCACTGATGTGTCTGC-TGTCTACTCTGTGGCTTCCTCAGAGGTGCTGGCTGTGAGGGCTGCCGCTACCATCAGAGCACTCCAAGTCCCTGCCTGCCCCTAGGATGTGACTCTGGCACAGGCCAAGGTAGTTCACAGCCAGAGGCAGTTCTGA-GAAAGTGGAGGAGCAGCCCG-GAGAGGC--TTC-TGCCTCCCATGCTATGCTAG-----TCAGTTTA-----CGGCACACACCAACGGGGTCCAGAAGAAAGAAACCCTTGGGTCTCCACTTGTTCGTGTGCCCTGGTGCCAAGAGCAACACACAACTG------------------------------------------------------------------------------GTCCTTCCTCATggtaatatagtgtggt-gg--aggtagatcttct-ctagggtcaggcaaacttgggttcaaatcccaccctg-gcgactctgaagtggcatttaaacccacctcgttgagagaggttggccag-gttgctgcagt------ctcttgaggcctattccttgtttgtggaagtaggatagttatatttccctctcactgtggttga----gagatgcaaccactgatgctcctggcatctagaaggtactcaatggatgtcggtttattGGGGCTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGGTAGTAGAAGAACCCATTC--AGCACC-------GGGGCCCGGGAGATTTCTAGGCTGGTGGCTGGGAAGTTGGCCATACTCCTTGTCNNNNNNNNNNACCCATTCAGCACCGGGCCCTAGATTTCTAGGCTGGTGGCTGGGAAGTTTGGCCATACTCCTTGTTCATGTGTACGCAGTAAT i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1756601 795 + 3513951 CCAAATGTAGAGGCCCA-GATTAGGCACTGGAGACCAGGGGTCTTGGTCCTGGTTCACTTCC-----AGGCTATAGTTTTCTCTAGAGAGACGCTGCCACTGATGTGTCTGC-TGTCTACTCTGCTGCTGCCTTGGAGGTGCTGGCGGCGAGGGCTGCCACTGCCATCAGAGTACTCCGAGTCCCTGCCTGCTTCCAGGATGTGACTCTGGCACAGGCCAGAGTAGTTCACAGCCAGAGGTAGTTCTGA-GCAGGTGGAGGAGCAGCCCG-GAGAGGC--TTC-TGCGTCCCATGCCATGCTAG-----TCAGTTTA-----TGGCACCCACCAAGGGTGTACAGAAGAATGAAACCTTTGGGTTTCCACTCGTCCGTGTGCCCTGGTGCCAAGAGCAACACACAACTG------------------------------------------------------------------------------GTCCTTCTTCA-ggtagcatagtgtggt-gg--aggtggatcttct-ctagggtgaggcacacttgggttcaaatcccaccctg-gtgactctgaagtggcatttgaacccacctcactgagagaggttggccag-gtcgctgcact------ctcttgagacctagtccttgtttgtggaagtaggatagttatatttccctctcactgtggttga----gagATGCAACCACTGATGCTCCTGGCATCTAGAAG-------------TTTGATTTATTGGGGGTCCCTGGGAACCAGCAGGTACAGTCTCT-TCCTTCCAG------AGAGAAAAAGGAGCTGAAGAGGCAGTAGAAGAACCCATTC--AGCACC-------G-----------------------------------------------------------------------------GGGGCCTAGATTTCTATGTTGGTGGCTGGGAAGTTTGGCCATACTCCTTGTTCATGTATACATGGTAAT i saiBol1.JH378271 C 0 I 561 s cebCap1.NW_016107730v1 1806111 794 + 1920343 CCAATTGTAGAGGCCCA-GATTTGGCACTGGAGACCAGGGGTCTTGGTCCTGGTTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATGTGTCTGC-TGTCTACTCTGTTGCTGCCTCAGAGGTGCTGGTGGTGAGGGCTACCGCTGCCATCAGAGCACTCCAAGTCCCTGCCTGCCTCTAGGATGTGACTCTGGCACAGGCCAAGGTAGTTCACAGCCAGAGGCAGTTCTGA-GCAGGTGGAGGAGCAGCCCA-GGGAGGC--TTC-TGCCTCCCATGCCATGCTAG-----TCAGTTAA-----TGGCACGCACCAAGGGTGTCCAGAAGAATGAAACCCTTGGGTCTCCACTCGTCCGTGTGCCCTGATGCCAAGAGCAACAAGCAACTG------------------------------------------------------------------------------GTCCTTCTTCA-ggtagcatagtgtggt-gg--aggtggatcttct-ctagggtgaggcaaacttgggttcaaatcccaccctg-gcaactctgaagtagcatttgaacccatctcact--gagaggttggccag-gtcgctgcact------gtcttgacacctattccttgtttgtggaagtaggatagttatatttccctctcactgtggttga----gagATGCAACCACTGATGCTCCTGGCATCTAGAAGGTACTCAGTGGATGTTGGTTTATTGGGGCTCCCTGGGAACCAGCAGGTACAGCCTCT-TCCTCCCAG------AGAGCAAAAGGAGCT------------GAAGAACCCACTC--AGCACC-------G-----------------------------------------------------------------------------GGGTCCTAGATTTCTACGTTGGTGGCTGGGAAGTTTGGCCATACTCCTTGTTCCTGTATATGCAGTAAT i cebCap1.NW_016107730v1 C 0 I 543 s aotNan1.NW_018502359v1 6917083 809 - 7032639 CCAAATGTAGAGGCCCA-TATTTGGCACTGGAGACCAGGGGTCTTGGTCCTGGTTCACTTCC-----AGGCTGTAGTTTTCTCTAGAGAGACGCTGCCACTGATGTGTCTGC-TGTCTACTCTGCTGCTGCCTCGGAGGTGCTGGCGGCGAGGGCTGCCGCGGCCATCAGAGCACTCCAAGTCCCTGCCTGCCTCTAGGATGTGACTCTAGCACAGGCCAAGGTAGTTCACAGCCAGAGGCAGTTCTGA-GCAGGTGGAGGAGCAGCCTG-GAGAGGC--TTC-TGCCTCCCATGCCATGCTGG-----TCAGTTTA-----TGGCATGCACCAAGGGTGTCCAGAAGAATGAAACCCTTGGGTCTCCACTCGTCCGTGTGCCCTGGTGCCAAGAGCAACACACAACTG------------------------------------------------------------------------------GTCCTTCTTCATggtagtatagtgtggt-gg--aggtggatcttct-ctagggtcaggcaaacttgggttcaaatcccaccctg-gcgactctgaagtggcctttgaacccacctcgctgagagaggttggccag-gtcgctgcact------ctcttgagacctagtccttgtttgtggaaataggatagttatatttccctctcactgtggttga----gagatgcaaccactgatgctcctggcatctagaaggtactcagtggatgttggtttattGGGGCTCCCTGGGAACCAGCAGGTACAGCCTCT-TCCTCCCAG------AGAGAAAAAGGAGCTGAAGAGGTAGTAGAAGAACCCACAT--GGCACC-------G-----------------------------------------------------------------------------GGGCCCTAGATTTCTACGTTGGTGGCTGGGAAGTTTGGCCATACTCCTTGTTCATGTATACGCAGTAAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22728495 738 + 28711273 TTAGACTTGGAGGCCCACCATGGGGCA----------GTGGTCTTGGTCTCGGCTCACCTCT--------CTCCTTTTGGGTGTAGAGAGA-------------------------------TGCTGCTGCCTGGAAGCTGCTGGT-GCGAGGCCTGCAGCTGC--------CACTCCAGCTCCTTGCCCACCTCTCAGATGTGGCTCTGTTA-AGGTCAGGGCAGTTCACAGGCAGACACAGCCGAGA-GCAGATGGAGGGACAGCCCT-GGGAGGCTGTGC-TGCCTTCTGTGCTGTGCTTG-----TCAGTTTAGTTTTTGGCAAGCACATGGCATGTCTGAAAGAATGAAACTCTTGTAACTC---TCACT-------CCCAGTGCAAAGAGCAGTGCACAGTCG------------------------------------------------------------------------------GTCCTGTCCagtggcagcttagtgcggcggg--aagtagatcatct-ccaaggtccagcagacctggattcaaatcccaccttg-gtgactcta----------------------gctgagtgatgttggccag-gtcactacaca------ctcttgaaacctattcctgtttgttaaaagttggataactgtgtttccctgtcactgtgatggaggagggggccatgcacataaagctctcggcaTCT-GGAGGTGCTCAGGGGATCCAGGGCTGCTGGGGCTCCCTGGGAGGCAGAAGGCACTGCTTTT-CCTTCTCAG------AAGGGCAGAGGGGCTGAAGAGGTGGCTCCAGGACCCCACAGCAGCATC-------G-----------------------------------------------------------------------------AGGGCCCAGACTCCCTCGTGGGCGGTCTGGAAGTGTGACCGTACTCCTTGCTCACATGCGCACAGTAAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22015834 833 - 122082543 TTAGGCCTGGAGGCCCA-GCGTGGGTACTGGGGACA-ATTGTCTTGGTTCTGGCTCGATGCCCAGAGATGTACTTTTTTTTTTTTGAGAAGCATTGTCATAGATTTCTCAGT-TCTCTGTCTT--CGTTGCCCCACAAATTCTGGCTTTGAGGATTGCAGTTGACACTAGAACCCTCTAGGTCACTATC-ACCTCTTAACCAGGGTTCTGGAAAAGACCAAAGTGGTCCTTAGCAGGCCGTGATGGAAAGGCAGATGGAAAAGCAGTCCC-GAGGGGC--T-----------AGGCTTTGCCAGGAGCTCCTGACTT-----TGGCAGGCACAGAATATGCCCGCAAGAACAAAA-TCTCCAATCCTAGCTTACCTGTGTATCTGggagaggagaggagaggagaggagaagagaggagaggagaggagaggaagaggagaggaagaggaagaggaagaggagaggggaggagaACAAAGCATAGATACCTTTCTTTGCTGCTACATCATTTGGA-AG--ATAGAAAACTTTTGCTAGAGTCAGACAGAGCTGATCTCAGATGCTGCCT--------------------------------------GGTGATGCTAGCCTGAGTCACTACAGTGGTGACCCCTTGATGCCTAGTCCTCAATGGAAGAAGTAGAATTATTACCATTTCTTTCCATTA-GGTTGA----GGGAGAGCTCACACAATGTTCCTGGCAGGTGGCAGGGACGTAGTAGATACC-----------GCTTATGGAGAACCAGTGGGGACTGTCTGT------CCAG------CAGGAGGGAAGAGCTGGTGAGGTG-----------CACTCCCAGGGTCAACTTGAG-----------------------------------------------------------------------------GAGCCCTAGCTGTCTATGGTGGTGGCCTGGAAGTGTGACAATAGCTCTTGTCTATAACCATG--GTTCT i mm10.chr11 C 0 I 3 s canFam3.chr9 21345083 732 + 61074082 -------------CTTA-GATTGGGCACTGGGGACA-GCTGTTTGGGTCATGGA-------C-----A-----TATTTTTTTCCAGAGACAAGTGTTC-------------T-TGTCCCCTCTGCTGTTCCCTTTGAGGTGCCGATGGTGAGAAATGCAGTTGGTAT--GAATGCTCCAAATGCCTCTCTACCTCTTGGATATGGCTCTGACCCAGGCCCAGG--GGTCACAGTCAGA------------CATGGTGGAAGAGCA---CT-GAGAGAT--CATGCACCTTCTTTGCTATGCTAG-----TCAATTTAGCACCTGGCATGAGGTGAGCATGTTC--AAGAATGAAACTCTCTGATTTTGGCTCACCTGTGTACCCTGGTCCAAAGACCAATGCAGATTTG------------------------------------------------------------------------------GTTGTTCTGTATAgtagcatagtatggt-ggaaaggagcacttgct-ctggaattgggccgatctgggctcaaattccaccctctgtgacactagag----------------------aagtgaagttggccag-gctactacgct------ctcttgaggcctattcttcagttgtaaaattagaaaaatattatttccccttcactattgttga----gggataatccatatagcactcttggccgagagaaggt--tcaatggatattggttTA-TGGGGCTCCCTGAGAACCAGAAGGGATAATCTTT-TCCTCTTAG------AAGGAATGAGGGACTAAATAGGTGGTAGCAGAACCTATTAACAGTATT-------G-----------------------------------------------------------------------------GGGCCATGTATTTCCACGTTGGTGGCCTGGAAGTTTGACCACCCTCCTTTTCCAT----AAGCAATAAG i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 317131 639 - 852752 TTATACATGGAGGCCCC-GAGTGGGTACTGGGGACA-GCTGTCTTGGTCCTGGCCCATTTCT-----CACATGCAGTTTTCTCTAGA----------TATTGATGCACATGCTTGGCTACCCT-CTGCTGCCTTGGCAGCAGTGGTGGTGAGGATTGCAGTTGGCATCAGAGTACTCTGAATCCCTGGCTGCCTCTTGGACATGACTCTGACA----------TAGTTC------------------------------------------AAGGTGT--TGT-T---------------CTAA-----TCAATTTAGCTTTTAGCAAACACTGAG-ATGTC-----------AGCACTCAGATCTCAGTTCACCCATATATCCTGGTTCAAAGACTGAAGCAAAATTG------------------------------------------------------------------------------GTGCTTCTTCATGgtgg------------aa--agattg---tgct-ctggagtcagacagactgaggttcaattccaac--------------------------------------tgaatgatattcgccaa-gtcactacact------ctcttgacacctactcctcatttgtaaaactagaatag----atttctctcttacagttgttga----gggat----catct----------gtatatacaagatgctcagtagagATTGGTTTATTGGGACTCCCTGGGAACCAGCAGGGACAGTCTTT-TCCTCCTTG-----CAGGGAAGGAGGAGCTAAACAGGTGGTAGCAAAACCCATTAGTAGC-TC-------A-----------------------------------------------------------------------------GGGTCATAAAGTCTTATGCTGATGAC-AGGAAGTTTTACCACACTCCTTG------------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35820231 24822 - 65901067 I a score=108178.000000 s hg38.chr17_GL383564v2_alt 13631 12 + 133151 AAAAGCCATCTT s panTro5.chr17 16207511 12 + 83181570 AAAAGCCATATT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114868 12 + 83442489 AAAAGCCATATT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3949964 12 + 4267968 AAAAGCCATCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928340 12 - 2193130 AAAAGCCATCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002290 12 - 77216781 AAAAGTCACCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914890 12 - 80997621 AAAAGTCACCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971169 12 + 10377808 AAAAGTCACCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858266 12 - 8458610 AAAAGTCACCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814588 12 + 75148670 AAAAGTCACCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037754 12 + 4244037 AAAAGTCACCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2064974 12 + 4569836 AAAAGTCACCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46031284 12 - 159171411 AAAACCCACCTT i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1757957 12 + 3513951 AAAAGCCACCTT i saiBol1.JH378271 I 561 C 0 s cebCap1.NW_016107730v1 1807448 12 + 1920343 AAAAGCCACCTT i cebCap1.NW_016107730v1 I 543 C 0 s aotNan1.NW_018502359v1 6917892 12 - 7032639 AAAAGCCACCTT i aotNan1.NW_018502359v1 C 0 I 547 s otoGar3.GL873537 22729233 11 + 28711273 -AAAGCCCCCCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22016670 9 - 122082543 TAGAACCAT--- i mm10.chr11 I 3 I 3 s canFam3.chr9 21345816 11 + 61074082 AAAACCAATCA- i canFam3.chr9 I 1 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35820231 24822 - 65901067 I e dasNov3.JH570468 317770 0 - 852752 C a score=15300.000000 s hg38.chr17_GL383564v2_alt 13643 1 + 133151 C s panTro5.chr17 16207523 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114880 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3949976 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928352 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002302 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914902 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971181 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858278 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814600 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037766 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2064986 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46031296 1 - 159171411 c i calJac3.chr5 C 0 I 4801 s saiBol1.JH378271 1757969 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807460 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918451 1 - 7032639 C i aotNan1.NW_018502359v1 I 547 C 0 s otoGar3.GL873537 22729244 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21345827 1 + 61074082 C i canFam3.chr9 C 0 C 0 e mm10.chr11 22016679 3 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35820231 24822 - 65901067 I e dasNov3.JH570468 317770 0 - 852752 C a score=149551.000000 s hg38.chr17_GL383564v2_alt 13644 19 + 133151 TGTTGTCATTAGGCCT--GTT s panTro5.chr17 16207524 19 + 83181570 TGTTGTCATTAGGCCT--GTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114881 19 + 83442489 TGTTGTCATTAGGCCT--GTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3949977 19 + 4267968 TGTTGTCATTAGGCCT--GTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928353 19 - 2193130 TGTTGTCATTAGGCCT--GTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002303 19 - 77216781 TGTAGTCATGAGGCCT--GTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914903 19 - 80997621 TGTAGTCATGAGGCCT--GTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971182 19 + 10377808 TGTAGTCATGAGGCCT--GTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858279 19 - 8458610 TGTAGTCATGAGGCCT--GTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814601 19 + 75148670 TGTAGTCGTGAGGCCT--GTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037767 19 + 4244037 TGTAGTCATGAGGCCT--GTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2064987 19 + 4569836 TGTAGTCATGAGGCCT--GTT i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1757970 19 + 3513951 TGTTGTCATTATTCCT--GTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807461 19 + 1920343 TGTTGTCATTAGTCCT--GTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918452 19 - 7032639 TGCTGTCATTAGTCCT--GTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729245 21 + 28711273 TGCTATTATCAGAGCTCAGTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22016682 18 - 122082543 TGCTACTA-GAGACTT--ATT i mm10.chr11 I 3 C 0 s canFam3.chr9 21345828 17 + 61074082 TGTTAT--TGGGGCTT--AGT i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 317770 18 - 852752 TGTTACTGGAACTCAG--GT- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35820231 24822 - 65901067 I e calJac3.chr5 46031297 4801 - 159171411 I a score=849461.000000 s hg38.chr17_GL383564v2_alt 13663 68 + 133151 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCATTGGGCTGTCAGAGGACAAGACTGTTT s panTro5.chr17 16207543 68 + 83181570 TCTCACTCCAGGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCGTTGGGCTGTCAGAGGACAAGACTGTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114900 68 + 83442489 TCTCACTCCAGGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCATTGGGCTGTCAGAGGACAAGACTGTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3949996 68 + 4267968 TCTCACTCCAAGTAGCCTAACTGATCCA-------------------AAAAAAGCA-TCCATTGGGCTGTCAGAGGACAAGACTGTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928372 69 - 2193130 TCTCACTCCAAGTAGCCTAACTGAATCC------------------AAAAAAAGCA-TTCATTGGGCCGTCAGAGGACGAGACTGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002322 68 - 77216781 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCGTTGGGCTGTCAGAGGACAAGACTGTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914922 68 - 80997621 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCGTTGGGCTGTCAGAGGACAAGACTGTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971201 68 + 10377808 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCGTTGGGCTGTCAGAGGACAAGACTGTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858298 68 - 8458610 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCGTTGGGCTGTCAGAGGACAAGACTGTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814620 68 + 75148670 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCACTGGGCTGTCAGAGGACAAGACTGTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037786 68 + 4244037 TCTCACTCCAAGTAGCCTAACTGAATCC-------------------AAAAAAGCT-TTCGTTGGGCTGTCAGAGGACAAGACTGTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065006 68 + 4569836 TCTCACTCTAAGTAGCCTAACTGAATCC-------------------AAAAAAGCA-TTCATTGGGCTGTCAGAGGACAAGACTGTTT i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1757989 67 + 3513951 TCTTATTCCAAATAGCCTAACTGAACTC-------------------AAAAAAGCA-TTCTTTGGGTCATCAGA-GACAAGATTGTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807480 68 + 1920343 TCTCATTCCAAATAGCCTAACTGAACCC-------------------AAAAAAGCA-TTCTTTGGGTCATCAGAGGACAAGACTGTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918471 68 - 7032639 TCTCATTCCAAATAACCTAACTGAACCC-------------------AAGAAAGCA-TTCTTTGGGTCGTCAGAGGACAAGACTGTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35845053 68 - 65901067 TCTCACTCCGAGTGGCCTCACTGAAACC-------------------AGGGAAGCA-TTCTTTGGGCTGTCAGAGGACGAGACTGTCC i micMur3.chr16 I 24822 C 0 s otoGar3.GL873537 22729266 68 + 28711273 TCTCACTCTCAGTGGCCTTACTGAAACC-------------------AAGAAGGCA-TTCTTTGGGCTGTCAAAGGACAAGTCTGTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22016700 69 - 122082543 TCTCCTTTTGAGTGGTCCATCTGACACT-------------------AGGCAAATAGGTTTTTGTGTTATCACAAGCCTAGAATATCT i mm10.chr11 C 0 I 1194 s canFam3.chr9 21345846 87 + 61074082 TTTCACTCCAAATGGCTTAACCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCA-TTCCTTGGGCTGTCAAAGGGCAAGCAGGCTC i canFam3.chr9 I 1 I 1 s dasNov3.JH570468 317788 67 - 852752 TGTTGCTCCAAGCACCTTAACCGAAACC-------------------AGAAGAACT-TTC-TCGGGCTGTCAGAGGACAGGAATGCCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e calJac3.chr5 46031297 4801 - 159171411 I a score=144012.000000 s hg38.chr17_GL383564v2_alt 13731 11 + 133151 G----------GTGGGCTCTT-- s panTro5.chr17 16207611 11 + 83181570 G----------GTGGGCTCTT-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114968 11 + 83442489 G----------GTGGGCTCTT-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950064 11 + 4267968 G----------GTGGGCTCTT-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928441 21 - 2193130 GGTGGGCTCCTGTGGGCTCTT-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002390 21 - 77216781 GGTGGGCTCTTGTGGGCTCTT-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27914990 21 - 80997621 GGTGGGCTCTTGTGGGCTCTT-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971269 21 + 10377808 GGTGGGCTCTTGTGGGCTCTT-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858366 21 - 8458610 GGTGGGCTCTTGTGGGCTCTT-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814688 21 + 75148670 GGTGGGCTCTTGTGGGCTCTT-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037854 21 + 4244037 GGTGGGCTCTTGTGGGCTCTT-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065074 21 + 4569836 GGTGGGCTCTTGTGGGCTCTT-- i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1758056 21 + 3513951 GGTGGGCTCTTGTGGGCTCTT-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807548 21 + 1920343 GGTGGGCTCTTGTGGGCTCTT-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918539 21 - 7032639 GGTGGACTCTTGTGGGCTCTT-- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35845121 11 - 65901067 T----------GTGGGCTCTT-- i micMur3.chr16 C 0 I 72 s otoGar3.GL873537 22729334 11 + 28711273 A----------GTGGGCTCTT-- i otoGar3.GL873537 C 0 I 11 s canFam3.chr9 21345934 11 + 61074082 ----------TGTGGGCTTCC-- i canFam3.chr9 I 1 I 2 s dasNov3.JH570468 317855 23 - 852752 AGGGAGTCCTTGTGTGTTTCCTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22016769 1194 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e calJac3.chr5 46031297 4801 - 159171411 I a score=587005.000000 s hg38.chr17_GL383564v2_alt 13742 69 + 133151 CTAATGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAGTGGCCATGACCCTCCCTGACCCTCAGT--GTGATG s panTro5.chr17 16207622 69 + 83181570 CTAATGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAGTGGCCATGACCCTCCCTGACCCTCAGT--GTGATG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16114979 69 + 83442489 CTAATGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAGTGGCCATGACCCTCCCTGACCCTCAGT--GTGATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950075 69 + 4267968 CTAATGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAGTGGCCATGACACTCCCTGACCCTCAGT--GTGATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928462 68 - 2193130 CTAGTGAGGAACCTACAAGAGTCATG----------TTTTAA--------GAAGTGGCCGTGAC-CTCCCTGACCCTCAGT--GTGATG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002411 63 - 77216781 CTAACGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAATGGCTGTGACC------AACCCTCAGT--GTGATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915011 63 - 80997621 CTAATGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAATGGCTGTGACC------AACCCTCAGT--GTGATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971290 63 + 10377808 CTAACGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAATGGCTGTGACC------AACCCTCAGT--GTGATG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858387 63 - 8458610 CTAACGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAATGGCTGTGACC------AACCCTCAGT--GTGATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814709 69 + 75148670 CTAACGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAACGGCTGTGACCCTCCCTGACCCTCAGT--GTGATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037875 63 + 4244037 CTAACGAGGAAACCACAAGAGTCATG----------TTTTAA--------GAAATGGCTGTGACC------AACCCCCAGT--GTGATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065095 69 + 4569836 CTAACGAGGAACCCACAAGAGTCATG----------TTTTAA--------GAAGTGGCTGTGACCCTCCCTGACCCTCAAT--GTGATG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1758077 69 + 3513951 CTAACAGGGAACCCACAAGAGTCATG----------TTTTAA--------GAAGTGGCCATGACCCTTCCTGACCCTCCAC--GTGACA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807569 69 + 1920343 CTACCAGGGAACCCACGAGAGTCATG----------TTTTAA--------GAAGTGGCCATGACCCTCCCTGACCCTCCAT--GTGACA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918560 69 - 7032639 CTAACAGGAAACCCACAAGAGTCATG----------TCTTAA--------GAAGTGGCCATGACCCTCCCTGACCCTCCAT--GTGATG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729356 61 + 28711273 CTCACAAGTAACCAGAGAGAGTTGCG----------TTTTAA--------GGAGTGGCCACAACC--------CCTCCCGT--GTAATA i otoGar3.GL873537 I 11 C 0 s canFam3.chr9 21345947 74 + 61074082 CTAACAAATAA----GGAAGGTTTTGTTTATTTTGTTTTTGACTTTACTTAAAGTAGCCATAACC---------TTTTCAT--GTGACA i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 317878 62 - 852752 CTAACAAGTAAACCACAAGAGTCACACA--------TATTGA--------GGAGTGGTCATAACC-----------TCAGCAGATGACA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22016769 1194 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845132 72 - 65901067 I e calJac3.chr5 46031297 4801 - 159171411 I a score=1292489.000000 s hg38.chr17_GL383564v2_alt 13811 103 + 133151 GGGTTGTGGAGATCCGACCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTAACAAGCTCTACCTATGAGGTCCC-ATGGCTA---GGTGTGACAGGAGGTGCCAC s panTro5.chr17 16207691 103 + 83181570 GGGTTGTGGAGATCCGACCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTAACAAGCTCTACCTATGAGGTCCC-ATGGCTA---GGTGTGACAGGAGGTGCCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115048 103 + 83442489 GGGTTGTGGAGATCCGACCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTAACAAGCTCTACCTATGAGGTCCC-ATGGCTA---GGTGTGACAGGAGGTGCCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950144 103 + 4267968 GGGTTGTGGAGATCCGACCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTAACAAGCTCTACCTATGAGGTCCC-ATGGCTA---GGTGTGACAGGAGGTGCCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928530 103 - 2193130 GGGTTGTGGAGATCCGACCTGTCCCCACCTTTCTGGGCCAGG--TCGCACCCTTAACAAGCTCTACCTATGAGGTCCC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002474 103 - 77216781 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAGCTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915074 103 - 80997621 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAGCTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971353 103 + 10377808 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAGCTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858450 103 - 8458610 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAGCTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814778 103 + 75148670 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAGCTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2037938 103 + 4244037 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAGCTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065164 103 + 4569836 GGGTTGTGGAGATCCGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTGACAAACTCTACCTGTTAGGTACC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1758146 103 + 3513951 GGGTTGTGGAGATCTGGCCTGTCCCCACCTTTCTTGGCCAGG--TCACACCCTTAACAAGCTCTACCTGTGAGTTCCC-ATGGCTA---GGTGTGGTAGGAGGTGCCAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807638 103 + 1920343 GGGTTGTGGAGATCTGGCCTGTCCCCACCTTTCTTGTCCAGA--TCACACCCTTAATAAGCTCTACCTGTGAGTTCCC-ATGGCTA---GGTGTGGCAGGAGGTGCCAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918629 103 - 7032639 GGGTTGTGGAGATCTGGCCTGTCCCCACCTCTCTTGGCCATG--TCACACCCTTAACAAGCTCTACCTGTGAGTTCCC-ATGGCTA---GGTGTGGCAGGAGGTCCCAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35845204 103 - 65901067 GGGTTGTGGAGATCTGGCCTGTCCTCACCTTTCCTGGCCAGG--TCGCAGCCTGGGTGAGCTCCACCTGTAAGGCCCC-ATGGCTA---GGGGTGGCAGGAAGGGCCAC i micMur3.chr16 I 72 I 753 s otoGar3.GL873537 22729417 105 + 28711273 GGGTTGTGGAGATCTGACCTGACCCCACCTTTCTTGGCTAGGTTTCTTGGCCTTAGCGAGCCCTATCTGTGAGGCCCC-ATGGCTG---GGTGTAGCAGGAAGGGCCAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21346021 107 + 61074082 GGACCATGAAAATCTGGCCTGTTTCCCACTTGCCTGGCCAGG--TCACACCGTAAAGGCACTCTAGTTATGGGACCCCGGTGGCTACTGGGTGTGGTAGGAAAGGCTAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 317940 93 - 852752 GTGCTGTG-AGATCTGGCTTGT--CCACCTTGCCTG-CCAGG--TCGCACCCTTAGGAAACTCCAACTGCGGGGCCTC-------A---GGGGTGGCAGGAAAGACTAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22016769 1194 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e calJac3.chr5 46031297 4801 - 159171411 I a score=842994.000000 s hg38.chr17_GL383564v2_alt 13914 99 + 133151 TCAGGTACA-TAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTAACCAGTGCAG-TCAGGACACCTGGACCCT-GGGGTTTTACTCACATTCGTTATCCTAG s panTro5.chr17 16207794 99 + 83181570 TCAGGTACA-TAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTAACCAGTGCAG-TCAGGACACCTGGACCCT-GGGGTTTTACTTACATTCGTTATCCTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115151 99 + 83442489 TCAGGTACA-TAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTAACCAGTGCAG-TCAGGACACCTGGACCCT-GGGGTTTTACTTACATTCGTTATCCTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950247 99 + 4267968 TCAGGTACA-TAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTAACCAGTGCAG-TCAGGACACCTGGACCCC-GGGGTTTTACTCACATTCGTTATCCTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928633 99 - 2193130 TCAGGTACA-TAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTAACCAGCACGG-TCAGGACATCTGGACCCC-GGGGTTTTACTCACATTCGTTATCCTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002577 100 - 77216781 TCAGGTACA-CAGAAAATGCAG---GCTA--GAGGCTG--GCAGGTGGGTTACCAGCCCGG-TCAGGACACCTGGACCCTGGGGGTTTTACTCACATTCATTATCCTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915177 100 - 80997621 TCAGGTACA-CAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTTACCAGCCCAG-TCAGGACACCTGGACCCTGGGGGTTTTACTCACATTCATTATCCTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971456 100 + 10377808 TCAGGTACA-CAGAAAATGCAG---GCTA--GAGGCTG--GCAGGTGGGTTACCAGCCCGG-TCAGGACACCTGGACCCTGGGGGTTTTACTCACATTCATTATCCTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858553 100 - 8458610 TCAGGTACA-CAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTTACCAGCCCGG-TCAGGACACCTGGACCCTGGGGGTTTTACTCACATTCATTATCCTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814881 100 + 75148670 TCAGGTACA-CAGAAAATGAAG---GTTA--GAGGCTG--GCAGGTGGGTTACCAGCCCGG-TCAGGACACCTGGACCCTGGGGGTTTTACTCACATTCATTATCCTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2038041 100 + 4244037 TCAGGTACA-CAGAAAATGAAG---GCTA--GGGGCTG--GCAGGTGGGTTACCAGCCCGG-TCAGGACACCTGAACCCTGGGGGTTTTACTCACATTCATTATCCTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065267 99 + 4569836 TCAGGTACA-CAGAAAATGAAG---GCTA--GAGGCTG--GCAGGTGGGTTACCAGCCCGG-TCAGGACACCTGGACCCT-GGGGTTTTACTCACATTCATTATCCTAG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1758249 98 + 3513951 TCAGGTGCA-CAGAAAATGAAG---GCTG--GAGGCTG--GCAGGTGGGTAACTTGCCCGA-TCAGGAC-CCTGGACCCT-CGGGTTTTACTCACCTCGGTTATCCCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807741 98 + 1920343 TCAGGTGCA-CAGAGAATGAAG---GCTG--GAGGCTG--GCAGGTGGGTAACTCACCTGA-TCAGGAC-CCTGGACCCT-CGAGTTTTACTCACCTCGGTTATCCCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918732 98 - 7032639 TCAGGTGCA-CAGAAAATGAAG---GCTG--GAGGCTG--GCAGGTGGGTAACTCGCCCGG-TCAGGAC-CCTGGACCCT-GGGGTTTTACTCATCTCAGTTATCCCAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729522 54 + 28711273 ----------------------------------GCTGATGCAGGTAGGTAACCA-CCTGG-CCAGAGCACAGGGACATT-------------------ATTACTGCAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21346128 100 + 61074082 TTGGACACAGCAAGGACTGCAA---CCTAGGGAGCCTG--GCAGGTGGCTATCCAGCCTGGCTTAGGGCACCTGGACACT---GGTTTTACGAGCACCCATAATTATG- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 318033 82 - 852752 TCAGACACA-GGGAAGCCGCCATGCTCTA--GAGGCTG--GCAGG--------------GG-------CACCTGGACATT-GCAGTTTTACTCATGTCTGCTGTTGCAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22016769 1194 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I e calJac3.chr5 46031297 4801 - 159171411 I a score=1172594.000000 s hg38.chr17_GL383564v2_alt 14013 125 + 133151 CCTGAGAGCTTAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTTTTCTTGCAAG---T-GATTCT-------------CCCGCCTGGACATTCTGTGCCTGTCCCTG---GCCTCTCTGCCTCAC-A-TACTC-TCACCGACTGGAT s panTro5.chr17 16207893 125 + 83181570 CCTGAGAGCTTAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTTTTCTTGCAAG---T-GATTCT-------------CCCGCCTGGACATTCTGTGCCTGTCCCTG---GCCTCTCTGCCTCAC-A-TACTC-TCACCGACTGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115250 125 + 83442489 CCTGAGAGCTTAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTTTTCTTGCAAG---T-GATTCT-------------CCCGCCTGGACATTCTGTGCCTGTCCCTG---GCCTCTCTGCCTCAC-A-TACTC-TCACCGACTGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950346 125 + 4267968 CCTGAGAGCTTAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTTTTCTTGCAAG---T-GATTCT-------------CCCGCCTGGACATTCTGTGCCTGTCCCTG---GCCTCTCTGCCTCAC-A-TACTC-TCACCGACTGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928732 124 - 2193130 CCTGAGAGCTTAGGGCTCCCTCTGGTACCAAACCCCAGA--CA--TCTTTTCTTGCAAG---T-GATTC--------------CCCGCCTGGACATTCTGTGCCTGTCCCTG---GCCTCTCTGCCTCAC-A-TACTC-TCACCGAGTGGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002677 114 - 77216781 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCGACTGGACATTCTAT--------------GCCTCTCCGCCTCAC-A-TACTC-TCACCGACTGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915277 114 - 80997621 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCGACTGGACATTCTAT--------------GCCTCTCCGCCTCAC-A-TACTC-TCACCGACTGGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971556 114 + 10377808 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCGACTGGACATTCTAT--------------GCCTCTCCGCCTCAC-A-TACTC-TCACCGACTGGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858653 114 - 8458610 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCGACTGGACATTCTAT--------------GCCTCTCTGCCTCAC-G-TACTC-TCACCGACTGGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64814981 114 + 75148670 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCGACTGGACATTCTAT--------------GCCTCTCTGCCTCAC-G-TACTC-TCACCAACTGGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2038141 114 + 4244037 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCGACTGGACATTCTAT--------------GCCTCTCTGCCTCAC-A-TACTC-TCACCGACTGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065366 114 + 4569836 CCTGAGAGCTCAGGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---T-GATTCT-------------CCCAACTGGACATTCTAT--------------GCCTCTCTGCCTCAC-A-TACTC-TCACCGACTGGAT i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1758347 119 + 3513951 CCTGAGAGCT--GGGCTCCCTCTGGTATCAAATCCCAGA--CA--TCTCTTCTTGCAAG---C-GGTTCT-------------CCTGCCTGCACGTTCTGTGCCTCTCTG-----GCCTCTCTGCCTCAC-A-CACTC---GCCGACCGAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807839 121 + 1920343 CCTGAGAGCC--GGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---C-GATCCT-------------CCCGCCTGCACATTCTGTGCCTCTCTG-----GCCTCTCTGCCTCAT-A-CACTC-TTGCCTACTGAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918830 121 - 7032639 CCTGAGAGCC--GGGCTCCCTCTGGTACCAAATCCCAGA--CA--TCTCTTCTTGCAAG---C-GATTCT-------------CCCGTCTGTACATTCTGTGCCTCTCTG-----GCCTCTCTGCCTCAC-A-CACTC-TCGCCGACTGAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729576 122 + 28711273 GCAGAGGGCTCA-GGTGCCCTCTGGCCCCCAACCCCAGT--CG--TCTCTTCTTCCAGC---T-GATTCT-------------CCCACCCGG-----CTCCACCTGCCTCTGTCTGCATCCCTGCATCAC-T-ACCCC-TCACCGACTAGAT i otoGar3.GL873537 C 0 I 6 s mm10.chr11 22017963 128 - 122082543 CCCGAGAGCTAAGGGATGTCCTTGGTACCAAATCTCAAGCCCC--TCTCTCCTCACAAG--TT-GGCTGT-------------CTCTCCTGTACAT-ATGCCCTTCTCTCTG---GCTTCCCTCTACCACTA-CACAC-CCCCAGGCTGCAT i mm10.chr11 I 1194 I 2 s canFam3.chr9 21346228 124 + 61074082 AGTGACAGCTCAGGGCGCCCTCTGGTGCCAAAACCCAAG--CACTTCTCCACTTACAGA---CGGATTCC-------------TTCATCTGTACATTCTGT-----GCTCTG---GTCTCCCTACAGCCC-A-CAATCCTCACGGATTGGAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 318115 140 - 852752 CCTGAG-GCTCAGGGATCCCTCTGGCACCAAGTCCCAAG--CA--GCCCTCCTCTTAAACGTT-GATTTTTACCACCAAAGTCTCCCCTTGCACATTATGTTTCTCTCTCT----GCCCTCCAGTATCAT-GTTGCAC-TCACAGATTGGAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I e calJac3.chr5 46031297 4801 - 159171411 I a score=42484.000000 s hg38.chr17_GL383564v2_alt 14138 6 + 133151 GGATA-T s panTro5.chr17 16208018 6 + 83181570 GGATA-T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115375 6 + 83442489 GGATA-T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950471 6 + 4267968 GGATA-T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928856 6 - 2193130 CGATA-T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002791 6 - 77216781 GGATA-T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915391 6 - 80997621 GGATA-T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971670 6 + 10377808 GGATA-T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858767 6 - 8458610 GGTTA-T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64815095 6 + 75148670 GGATA-T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2038255 6 + 4244037 GGATA-T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065480 6 + 4569836 GGATA-T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036098 6 - 159171411 GGAAA-T i calJac3.chr5 I 4801 C 0 s saiBol1.JH378271 1758466 6 + 3513951 CGATA-T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807960 6 + 1920343 CAATA-T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918951 6 - 7032639 CGATA-T i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729704 5 + 28711273 CAACA-- i otoGar3.GL873537 I 6 C 0 s mm10.chr11 22018093 7 - 122082543 TACTAGT i mm10.chr11 I 2 C 0 s canFam3.chr9 21346352 3 + 61074082 ---TA-T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 318255 6 - 852752 TGATA-T i dasNov3.JH570468 C 0 I 8 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I a score=494036.000000 s hg38.chr17_GL383564v2_alt 14144 49 + 133151 AG---CCCTGAATG--TGGCA-CA-ATA---GGCTTTGCTTTGGCCACAA-TAACTGCAA s panTro5.chr17 16208024 49 + 83181570 AG---CCCTGAATG--TGGCA-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115381 49 + 83442489 AG---CCCTAAATG--TGGCA-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950477 49 + 4267968 AG---CCCTAAATG--TGGCA-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928862 49 - 2193130 AG---TCCTGAATG--TGGCA-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002797 49 - 77216781 AG---CCCTGAATG--TGGCC-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915397 49 - 80997621 AG---CCCTGAATG--TGGCC-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971676 49 + 10377808 AG---CCCTGAATG--TGGCC-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858773 49 - 8458610 AG---CCCTGAATG--TGGCC-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64815101 49 + 75148670 AG---CCCTGAATG--TGGCC-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2038261 49 + 4244037 AG---CCCTGAATG--TGGCC-CA-ATA---GGCTTTGCTTTGGCCACAA-TAATTGCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065486 49 + 4569836 AG---CCCTGAAAG--TGGCC-CA-ATA---GGCTTTGCTGTGGCCACAA-TAATTGCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036104 50 - 159171411 GG---CCCTGAAAT--AGGCACCA-GCA---GGC-TTGCTTTGGCCCCAATTAATGGCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1758472 49 + 3513951 GG---CCCTGAATA--CTGCA-CA-GTA---GGCTTTGCTTTGGCTGCAA-TAATTGCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1807966 49 + 1920343 GG---CCCTGAATA--CGGCA-CA-GTA---GGCTTTGCTTTGGCCGCAA-TAATTGCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6918957 49 - 7032639 GG---CCCTGAATA--CCGCA-CA-GTA---GGCTTTGCTTTGGCCGCAA-TAATTGCAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729709 46 + 28711273 GG---CCCTACATG--TGCTA-C---CT---GGTTCCG-TCGGGCCACAA-TAATTGCAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22018100 51 - 122082543 AG---TCTCAGCTGTTTGTCA-CACGTG---GAGAATGCTTTGGCTA-AA-TGCTTGCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21346355 50 + 61074082 AGGGACCCTAGGTG--------CA-ATATCCAGTTTTGCTTTGGTCACAA-TAATTTCAA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I e dasNov3.JH570468 318261 8 - 852752 I a score=761669.000000 s hg38.chr17_GL383564v2_alt 14193 65 + 133151 CC----------A-----------GGTGTCTCTTATTTTCCTTCTCCT---GAGGCTTCTGCTCCCTTGGCTGGGGGCCACATCTGGTT s panTro5.chr17 16208073 65 + 83181570 CC----------A-----------GGTGTCTCTTATTTTCCTTCTCCT---GAGGCTTCTGCTCCCTTGGCTGGTGGCCACATCTGGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115430 65 + 83442489 CC----------A-----------GGTGTCTCTTATTTTCCTTCTCCT---GAGGCTTCTGCTCCCTTGGCTGGTGGCCACATCTGGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950526 64 + 4267968 CC----------A-----------GGTGTCTCTTATTTTCCTTCTCC----GAGGCTTCTGCTCCCTTGGCTGGGGGCCGCATCTGGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928911 65 - 2193130 CC----------A-----------GGTGTCTCTTATTTTCCTTCTCCC---GAGGCTTCTGCTCCTTTGGCTGGGGGCCACATCTGGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002846 65 - 77216781 CC----------A-----------GGTGTCTCTTATTTTCCTCCCCCC---GAGGCTTCTGGTTCCTTGGTTGGGGGCCACATCTGGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915446 65 - 80997621 CC----------A-----------GGTGTCTCTTATTTTCCTCCCCCC---GAGGCTTCTGGTTCCTTGGTTGGGGGCCACATCTGGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971725 65 + 10377808 CC----------A-----------GGTGTCTCTTATTTTCCTCCCCCC---GAGGCTTCTGGTTCCTTGGTTGGGGGCCACATCTGGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858822 65 - 8458610 CC----------A-----------GGTGTCTCTTATTTTCCTCCCCCC---AAGGCTTCTGGTTCCTTGGTTGGGGGCCACATCTGGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64815150 65 + 75148670 CC----------A-----------GGTGTCTCTTATTTTCCTTCCCCT---GAGGCTTCTGCTTCCTTGGTTGGGGGCCACATCTGGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2038310 65 + 4244037 CC----------A-----------GGTGTCTCTTATTTTCCTCCCCCC---GAGGCTTCTGGTTCCTTGGTTGGGGGCCACATCTGGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065535 65 + 4569836 CT----------A-----------GGTGTCTCTTATTTTCCTTCCCCC---GAGGCTTCTGCTTCCTTGGTTGGGGGCCACATCTGGTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036154 52 - 159171411 CC----------A-----------AGGGTCTCTTATTTTCCTTCCCCC---AAAGTCTTTTCTTTTT-------------CATCTGATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1758521 65 + 3513951 CC----------A-----------GGTGTCTCTTATTTTCCTTCCCCC---GAGGCTTTTGCTCTCTTGGCTGGGGGTGGCATCTGGTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808015 65 + 1920343 CC----------A-----------AGTGTCTCTTATTTTCCTTCCCCT---GAGGCTTTTGCTCTCTTGGCTGGGAGCCACATCTGGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919006 65 - 7032639 CC----------A-----------GGTGTCTCTTATTTTCCTTCCCCC---GAGGCTTTTGCTCTCTTGGCTGGGGGCCGCATCTGGTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729755 75 + 28711273 CC----------AGGCTGTTTGGGGGTGGCTATTAATTTCCTTCCCTG---GAGAC-TCTGGCTCCCTGGCTGAGGACCACAGCCAGTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22018151 74 - 122082543 CCCATTGTTTTTA-----------GGAGGCTCTTATTTTGCTTCTCT----GAGACTTTTGCTCCCTTGGTTTAGGATAAGATTCACTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21346405 62 + 61074082 CC----------A-----------GGTGG---TTATTTTTTTTCCCCT---GAGACTTTTGTTCCTTTGGCTTGGGGCCAGATCCAGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 318269 68 - 852752 CT----------G-----------GGCAGCTCTTTTTTACTCTCTCCTCTGGAAACTTCTGCTCCTTTGGCTTAGGATCAGATATAGTT i dasNov3.JH570468 I 8 I 309 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I a score=3484580.000000 s hg38.chr17_GL383564v2_alt 14258 323 + 133151 CTGA----GCC---------------ACCT----AGTGCTTAGCCCGTCCCTCTTCAGTTCACCAATCC-TGCACTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCACGTGG----TAACATCAGTTGCGGCTCATGAGGCCCATGCAC----------------T---TATGTATTTTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTAAACAGCTACAGGCTGCT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CCCA-CTCCTGCTCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATTGAAGTGAATTTCTGGACTTTCC s panTro5.chr17 16208138 323 + 83181570 CTGA----GCC---------------ACCT----AGTGCTTAGCCCGTCCCTCTTCAGTTCACCAATCC-TGCACTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCACGTGG----TAACATCAGTTGCGGCTCATGAGGCCCATGCAC----------------T---TATGTATTTTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTAAACAGCTACAGGCTGCT-GGGGTGGACACT-GCAGTCACAGAGAGAGCTCTGGGGAAGGA--CCCA-CTCCTGCTCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATTGAAGTGAATTTCTGGACTTTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115495 323 + 83442489 CTGA----GCC---------------ACCT----AGTGCTTAGCCCGTCCCTCTTCAGTTCACCAATCC-TGCACTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCACGTGG----TAACATCAGTTGCGGCTCATGAGGCCCATGCAC----------------T---TATGTATTTTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTAAACAGCTACAGGCTGCT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGA--CCCA-CTCCTGCTCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATTGAAGTGAATTTCTGGACTTTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950590 323 + 4267968 CTGA----GCC---------------ACCT----AGTGCTTAGCCCGTCCCTCTTCAGTTCACCAATCC-TGCACTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCACGTGG----TAACATCAGTTGCAGCTCATGAGGCCCATGCAC----------------T---TATGTATTTTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTAAACAGCTACAGGCTGCT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CCCA-CTCCTGCTGCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATTGAAGTGAATTTCTGGACTTTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1928976 323 - 2193130 CTGA----GGC---------------ACCT----AGTGCTTAGCCGGTCCCTCTTCAGTTCGCCAATTC-TGCACTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCGCGTGG----TAACACCAGTTGCAGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCGTTT-CTCAC-AAATTCCATCAAAGTGGAAAGGAGAAAGGGTAAACAGCTACAGGCTGCT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CCCA-CTGCTGCTCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATTGAAGTGAATTTCTGGACTTTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30002911 324 - 77216781 CTGA----GCC---------------ACCT----AGTGCTGAGCCCGTCTATCTTCAGTTCACCAATCC-TGCACTGCCTGGGCACTGAC-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCGCGTGGT---TAACACCAGTTGGGGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGCCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCCAAGTGAATTTCTGGACTTTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27915511 324 - 80997621 CTGA----GCC---------------ACCT----AGTGCTGAGCCCGTCTATCTTCAGTTCACCAATCC-TGCACTGCCTGGGCACTGAC-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCGCGTGGT---TAACACCAGTTGGGGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGCCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCCAAGTGAATTTCTGGACTTTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1971790 308 + 10377808 CTGA----GCC---------------ACCT----AGTGCTGAGCCCGTCTATCTTCAGTTCACCAATCC-TGCACTGCCTGGGCA------------------------------------CTT-C---CC-AGCCTTCGCGTGGT---TAACACCAGTTGGGGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGCCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCCAAGTGAATTTCTGGACTTTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1858887 324 - 8458610 CTGA----GCC---------------ACCT----AGTGCTGAGCCCGTCTATCTTCAGTTCACCAATCC-TGCACTGTGTGGGCACTGAC-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCGTGTGGT---TAACACCAGTTGGGGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGATGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGCCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCCAAGTGAATTTCTGGACTTTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64815215 335 + 75148670 CTGA----GCC---------------ACCT----AGTGCTGAGCCCGTCTATCTTCAGTTCACCAATCC-TGCACTGCCTGGGGGCTGACTAGGGGCTGATGTGTGATAT---------TTCTT-C---CC-AGCCTTCGCATGGT---TAACACCAATTGGGGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGCCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCAAAGTGAATTTCTGGACTTTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2038375 324 + 4244037 CTGA----GCC---------------ACCT----AGTGCTGAGCCCATCTATCTTCAGTTCACCAATCC-TGCACTGCCTGGGCACTGAC-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCGCGTGGT---TAACACCAGTTGGGGCTCATGAGGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CTAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACCGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGCCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCCAAGTGAATTTCTGGACTTTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2065600 324 + 4569836 CTGA----GCC---------------ACCT----AGTGCTGAGCCCGTCTATCTTCAGTTCACCAATCC-TGCACTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCGCGTGGT---TAACACCAGTTGAGGCTCATGAAGCCCATGCAC----------------T---TATGTATTGTTT-GACA--CCAAATGCCATTT-CTCAC-AAATTCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGCTGCAGGCCACT-GGGGTGGACACT-GCAGTCACTGAGAGAGCTCTGGGGAAGGG--CACA-TTCCTGTCCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCAAAGTGAATTTCTGGACTTTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036206 322 - 159171411 TGAG----CCC---------------ACCT----AGTGCTGAGCCTATCCGTCTTCAGTTCACCAATTTGTGCATTGCTGGCGGGGTGAT-----------GTGTGATAA---------TTCTTCC---CC-AGCCCTCATGTGGTAACTAACACCAGTTGGGCCTCATGAGGCCCCTGCAC----------------T---TACGTATTG-TT-GATG--CCAAATGCCATTT-CTCACAAAATCCCAACAAAGTGGAAAGGAGAAAGGGCAAACAGATGCAGGTCGGT-GGGGTGGACACG-GCAGTCCCTGAGTGTGCTCTGGA---------CCA-TCAGTGCTCCCATC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCAAAGTGAATTTCTGGACTTCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1758586 315 + 3513951 CTGA----GCC---------------ACCT----AGTGTTGAGCCCGTCCGTCTTCAGTTCACCAATTC-TGCATTGCCTGCGGGCTGAC-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCTCATGG----CAACACCAGTTGGGCCTCACGAGACCCCTGCAC----------------G---TATGTATTG-TT-GATG--CCAAATGCCATTT-CTCAC-AAATCCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGATGCAGGCCGCT-GGGGTGGACCCG-GCAGTCACTGAGTGTGCTCTGGG---------CCC-TTAGTGCTCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCAAAGTGAATTTCTGGACTTTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808080 314 + 1920343 CTAA----GCC---------------ACCT----AGTGCTGAGCCCTTCCGGCTTCAGTTCACCAATTC-TGCATTGCCTGTGGGCTGAT-----------GTGTGATAT---------TTCTT-C---CC-AGCCTTCACGTGG----TAACACCAGTTGGGCCTCACGAGGCCCCTGCAC----------------T---TATGTATTG-TT-GATG--CCAAATGCCATTT-CTCAC-AAATCCCAGCAAAGTGGAAAGGAGAAA-GGTGAACAGATGCAGGCCGCT-GGGGTGGACACG-GCAGTCACTGAGTGTGCTCTGGG---------CCC-TCAGTGCTCCCACC-----ACTGTCTACACTG--------G-GAAGCCAAGAAGATCAAAGTGAATTTCTGGACTTTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919071 312 - 7032639 CTGA----GCC---------------ACCT----AGTGCTGAGCCCATCTGTCTTCAGTTCACCAATTC-TGCATTGCCTGCAGGCTGAT-----------GTATGATAT---------TTCTT-C---CC-AGCCTTTGTGTGG----TAACACCAGTTGGGCCTCATGAGGCCCCTGCAC----------------T---TATGTATTG-TT-GATG--CCAAATGCCATTT-CTCAC-AAATCCCAGCAAAGTGGAAAGGAGAAAGGGTGAACAGATGTAGGCCGCT-GGGGTGGACACG-GCAGTCACTGAGTGTGCTCTGGG---------CCC-TCAGTGCTCCCACC-----ACGGTCTACACTG--------G-GAAGCC---AAGATCAAAGTGAATTTCTGGACTTTCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22729830 285 + 28711273 TGAG----GCC---------------ACCT----CATGCTGAGCC-------------------------TGCGTGGGCAACAGGCTGAT-----------TTGCAATCT---------TTCCT-T---CC-AGGCTTCCCATGA----TGACACCAGTCG-GCCCCATG-GGCCCCTGTAC----------------T---CAGGTGTTTTTTAAACC--CCAAATGCCTTTTCCCCAC-AAAGCCCAGTGGAATGGAAGGGAGTAAGGGTGGCTGGCTGCAGACCCCT-GGGGCTGACCCT-GT-------------GCCTTGGGGAAAGA--TCCT-ATTCTGTCCCCATC-----A-TGTCTACACTG--------G-GAAGCCAAGACAATCCAAGTGGAATTCTGAACGTTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22018225 317 - 122082543 TGGG----GCC---------------ATCT----AGGGTCAGGCCCATCAGGCTCC------------C-TGTGCCACCAGAATGGTGAA-----------TTACCACTTGCCTTGCTATCTTT-T---CC-AGGCTTGACATGA----CAACATTTGTCCAGACTCCCAA-------------------------------CATGTGGCGTTT-TAAAATCTAAATATCATTA-CCAGC-AAAGTCTAGTAAGGTAGAAAGTA-------TGGCTGGCTGTAAGCCCCA-AGAATGGACATG-TTAGTTACTGAGAGGACTCCCGGGAAGGG--TCCAGCCTCTGTTCCCACTGAACAACCAACAATACTGACTTATCTG-GACAAGGAGAATTTTCCAGTGTGGTTTTTCTCTTTCC i mm10.chr11 C 0 I 223 s canFam3.chr9 21346467 344 + 61074082 TTGA----GCC---------------ACCTAGTAAGTACCGAACCCACTAGTCTTCAGATTACC-ACAC-TGCACTACCGATGTGCTGCT-----------CTGTAATAT---------TTTTT-T---CCAAGACTTCACACTA----TAATGCTAGGTGGGACTCTGCAGGCTCCTCCACTCATTGCTTGTTTTATT---TATTCATTTTTA-AACT--CTAAATGCCATTT-CTCCC-AAATACCAGGGAAATGGAA-GGAATAAGGGTGGCTGGCTGCAGGCC-CC-GGGGCAGATGCTGGCAGTCACTGAGCAAGCTTTGGAGAAGGGCTCACA-CTTCTGCTCCCACC-----ACTGTTTATACCC--------A-GAAACCAAAAATATCGAGATGGAATTCTAAACTTCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 318646 328 - 852752 ctgaaaatgccccagatACAGTTTGAGCTC----AGTGCTAAGCCCATTAGCTTTCAGCTCATCAGCCC-TGCACCATCAATATGCTGAT-----------TTGCAATAT---------TTCTT-CTTTCC-AGGCATCACATAA----TACAACCAGCAGGGCCTCTTCAGGCCCCTTCAC----------------TCACCACCTGTTTTTC-AACT--TC-AGTGTCAT---CCCAT-AAGAACCAGCACAGTGGAAAGGAGTAATGTTGGGCTGCTGCTATCACCTGGGGGTGGGCGCT-GACATCCCTGGTAGAGCTCTGGGAACAGACACACA-CTTCTGCTTCCCAC-----TCCCTCTACACTG--------GTGAAGCCAAGAAAATCC--------------------- i dasNov3.JH570468 I 309 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I a score=522872.000000 s hg38.chr17_GL383564v2_alt 14581 52 + 133151 TGAACAGGAGCATTTTTTATTTGGATAG----TTTTTT-------TGTAGACGATGATATGTG s panTro5.chr17 16208461 52 + 83181570 TGAACAGGAGCATTTTTTATTTGGATAG----TTTTTT-------TGTAGACGATGATATGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115818 52 + 83442489 TGAACAGGAGCATTTTTTATTTGGATAG----TTTTTT-------TGTAGACGATGATATGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950913 53 + 4267968 TGAACAGGAGCATTTTTTATTTGGATAG---TTTTTTT-------TGTAGACGATGATACGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929299 52 - 2193130 TGAACAGGAGCATTTTTTATTTGGATAG----TTGTTT-------TGTAGATGATGATATGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003235 52 - 77216781 TGAACAGGAACATTTTTTATTTGTATAG----TTTTTT-------TGTAGACGATGGTATGTG i rheMac8.chr16 C 0 I 458 s macFas5.chr16 27915835 52 - 80997621 TGAACAGGAACATTTTTTATTTGTATAG----TTTTTT-------TGTAGACGATGGTATGTG i macFas5.chr16 C 0 I 458 s macNem1.NW_012014910v1 1972098 52 + 10377808 TGAACAGGAACATTTTTTATTTGTATAG----TTTTTT-------TGTAGACGATGGTATGTG i macNem1.NW_012014910v1 C 0 I 458 s cerAty1.NW_012006043v1 1859211 52 - 8458610 TGAACAGGAACATTTTTTATTTGTATAG----TTTTTT-------TGTAGACGATGGTATGTG i cerAty1.NW_012006043v1 C 0 I 457 s chlSab2.chr16 64815550 52 + 75148670 TGAACAGGAACATTTTTTATTTGTATAG----TTTTTT-------TGTAGACGATGATATGTG i chlSab2.chr16 C 0 I 458 s manLeu1.NW_012106252v1 2038699 53 + 4244037 TGAACAGGAACATTTTTTATTTGTATAG---TTTTTTT-------TGTAGACGATGATATGTG i manLeu1.NW_012106252v1 C 0 I 457 s colAng1.NW_012122154v1 2065924 52 + 4569836 TGAACAGGAACATTTTTTATTTGTATAG----TTTTTT-------TATAGACGGTGATATGTG i colAng1.NW_012122154v1 C 0 I 1409 s calJac3.chr5 46036528 56 - 159171411 TGAACAGGAGCATTTTTTATTTGGATAGCTTTTTTTTT-------TGTAGACTATGATTTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1758901 54 + 3513951 TGAACCGGAGCATTTTTTATTTGGATAG--TTTTTTTT-------TGTCGACTATGATTTGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808394 54 + 1920343 TGAACCAGAACATTTTTTGTTTGGATAG--TTTTTTTT-------TGTAGACTATGATTTGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919383 49 - 7032639 TGACCAGGAGTATTTTTTATTTGGATAG-------TTT-------TGTAGACTATGATTTGTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22730115 40 + 28711273 TGAACAGGGGTGCTGC----------------TTTTTT-------TGCGGTCCCTGATGTGTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21346811 39 + 61074082 CAAACAGGAGCATTTTTTATTTGGATAC---AAATTTT-------TGTG-------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 318974 59 - 852752 AGAACAGGAGAATTTTCTGTTTAGATCT----TTCTTTGTGTGTGTGCAGTCCACGATGTGTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22018542 223 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I a score=143611.000000 s hg38.chr17_GL383564v2_alt 14633 13 + 133151 ATACCTAAGGCTG s panTro5.chr17 16208513 13 + 83181570 ATACCTAAGGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115870 13 + 83442489 ATACCTAAGGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950966 13 + 4267968 ATACCTAAGGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929351 13 - 2193130 ATACCTAAGGCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003745 13 - 77216781 ATACCTAAGGCTG i rheMac8.chr16 I 458 C 0 s macFas5.chr16 27916345 13 - 80997621 ATACCTAAGGCTG i macFas5.chr16 I 458 C 0 s macNem1.NW_012014910v1 1972608 13 + 10377808 ATACCTAAGGCTG i macNem1.NW_012014910v1 I 458 C 0 s cerAty1.NW_012006043v1 1859720 13 - 8458610 ATACCTAAGGCTG i cerAty1.NW_012006043v1 I 457 C 0 s chlSab2.chr16 64816060 13 + 75148670 ATACCTAAGGCTG i chlSab2.chr16 I 458 C 0 s manLeu1.NW_012106252v1 2039209 13 + 4244037 ATACCTAAGGCTG i manLeu1.NW_012106252v1 I 457 C 0 s colAng1.NW_012122154v1 2067385 13 + 4569836 ATACCTAAGGCTG i colAng1.NW_012122154v1 I 1409 C 0 s calJac3.chr5 46036584 13 - 159171411 ATACCCAAGGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1758955 13 + 3513951 GTACCCAAGGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808448 13 + 1920343 ATACCCAAGACTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919432 8 - 7032639 -----CAAGGCTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22730155 13 + 28711273 GTGCTTAACATGG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 319033 13 - 852752 GTAACTAAGGTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22018542 223 - 122082543 I e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I e canFam3.chr9 21346850 0 + 61074082 C a score=959031.000000 s hg38.chr17_GL383564v2_alt 14646 83 + 133151 ATGGTG--TGTGCCCCACCCTCCCCTCCTTCCCCCCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG s panTro5.chr17 16208526 83 + 83181570 ATGGTG--TGTGCCCCACCCTCCCTTCCTTCCCCCCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115883 83 + 83442489 ATGGTG--TGTGCCCCACCCTCCCCTCCTTCCCCCCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3950979 82 + 4267968 ATGGTG--TGTGCCCCACCCTCCCCTCCTTCCCCCCAGCATCTT-TCTTTGTCTTCCTGACCAAGAACAAAATCAATTTTATCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929364 83 - 2193130 ATGGTG--TGTGCCCCACTCTCCCCTCCTTCCCCCCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACCAAATCAATTTCATCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003758 83 - 77216781 ATGGTG--TGTGCCCCATCCTCCTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916358 83 - 80997621 ATGGTG--TGTGCCCCATCCTCCTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1972621 83 + 10377808 ATGGTG--TGTGCCCCATCCTCCTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1859733 82 - 8458610 ATGGTG--TGTGCCCCATCCTCCTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCA-CTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816073 82 + 75148670 ATGGTG--TGTGCCCCATCTTCTTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACGAAATCAATTTCA-CTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2039222 82 + 4244037 ATGGTG--TGTGCCCCATCCTCCTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCA-CTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2067398 83 + 4569836 ATGGTG--TGTGCCCCATCCTCCTGTCCTTCCTCTCAGCATCTTCTCTTTGTCTTCCTGACCAAGAACAAAATCAATTTCATCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036597 82 - 159171411 ATGGTG--TGTGCTCC-CCCTCCTCTGCTTCCTCCCAGCATCTTCTCTTTGTCTTCCTGACCAACAACAAAATCAGTTTCATCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1758968 82 + 3513951 ACAGTG--TGTGCTCT-CACTTCTCTCCTTCCTCCCGGCATCTTCTCTTCGTCTTCCTGATCAAGAACAAAATCAGTTTCATCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808461 82 + 1920343 ATGGTG--TGTGCTCC-CCCTCCTCTCCTTCCTCCCAGCATCTTCTCTTTGTCTTCCTGATCAAGAGCAAAATCAATTTTATCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919440 82 - 7032639 ATGGTG--TGTGCTCC-CCGTCCTCTCCTTCCTCCCAGCATCTTCTCTTCGTCTTCCTGATCAAGAACAAAATCAATTTCATCTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22730168 80 + 28711273 ATGGTG--AAAACCACA---TCCCCTCTGTCCCCTCAGCATCTTCCTTTCATCCTCCTGACTAAGCACGAAGTCAAATTTGTCCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22018765 81 - 122082543 ACGGTGGTTATATGCAACCCTTCACCCAT---CCTTAGCTTTGTCTTTAAATCTTTCTGGCC-AGAATACAATCTACTTCGTTCC i mm10.chr11 I 223 C 0 s canFam3.chr9 21346850 76 + 61074082 -TGTTG--TGG------TCCACCTCACCATCCCCTCATCATCCTCCCTTCATCTTCCCAACTAAGAACAAAATCAAATCTGCCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 319046 83 - 852752 ACAATG--TGTACCCTGCCCTGCCTCCCCTCCTGTTGGCATCCTCCCTTCACATTCCTGACTAAGAATGAGATCGGATTTGTCCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35845307 753 - 65901067 I a score=531304.000000 s hg38.chr17_GL383564v2_alt 14729 38 + 133151 TTCTCATGGCCA----CTT---AT---AATCTTCATGAGCTCAGCTTG s panTro5.chr17 16208609 38 + 83181570 TTCTCATGGCCA----CTT---AT---AATCTTCATGAGCTCAGCTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16115966 38 + 83442489 TTCTCATGGCCA----CTT---AT---AATCTTCATGAGCTCAGCTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951061 38 + 4267968 TTCTCATGGCCA----CTT---AT---AATCTTCATGAGCTCAGCTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929447 38 - 2193130 TTCTCACGGCCA----CTT---AT---AATCTTCATGAGCTCAGCTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003841 38 - 77216781 TTCTCATGGCCA----CTA---AT---AATCTTCATGAGCTCAGCTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916441 38 - 80997621 TTCTCATGGCCA----CTA---AT---AATCTTCATGAGCTCAGCTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1972704 38 + 10377808 TTCTCATGGCCA----CTA---AT---AATCTTCATGAGCTCAGCTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1859815 38 - 8458610 TTCTCATGGCCA----CTA---AT---AATCTTCATGAGCTCAGCTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816155 38 + 75148670 TTCTCATGGCCA----CTA---AT---AATCTTCATGAGCTCAGCTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2039304 38 + 4244037 TTCTCATGGCCA----CTA---AT---AATCTTCATGAGCTCAGCTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2067481 38 + 4569836 TTCTCATGGCTA----CTT---AT---AATCTTCATGAGCTCAGCTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036679 38 - 159171411 TTCTCATGGCCA----CTT---AC---AGTCTTCATGAGCTCAGCTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759050 38 + 3513951 TTCTCATGACCA----CTT---AT---AGTCTTCATGAGCTCGGCTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808543 38 + 1920343 TTCTCATGGCCA----CTT---AT---AGTCTTCATGAGCTCAGCTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919522 38 - 7032639 TTCTCATGGCCA----CTT---AC---AGTCTTCATGAGCTCAGCTTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846060 41 - 65901067 TTCTCATGGCCA----CTTGTGAT---AATCTTCATGAGCTCAGCTTG i micMur3.chr16 I 753 I 15 s otoGar3.GL873537 22730248 39 + 28711273 TTCCTACAGCCA----CTCACAGT---GATCTTCGTGAGCGCAACT-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22018846 31 - 122082543 TTCTCATGGACA----CTT---A----------CAGGGGCACAGCGTA i mm10.chr11 C 0 C 0 s canFam3.chr9 21346926 41 + 61074082 TTCTGTTGACCG----CTT---ATAGGAATCTTCATGAGCTCATCTTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 319129 42 - 852752 CTCTGTTGGGAAGTGTCTA---AG---AATCTTTGGAAGCTCAGCTTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I a score=156156.000000 s hg38.chr17_GL383564v2_alt 14767 50 + 133151 AAGCTCATGAAGTTCTCAGCCTGTTTAAATTAAACCATTTTTAATGTATC s panTro5.chr17 16208647 50 + 83181570 AAGCTCATGAAGTTCTCAGCCTGTTTAAATTAAACCATTTTTAATGTATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116004 50 + 83442489 AAGCTCATGAAGTTCTCAGCCTGTTTAAATTAAACCATTTTTAATGTATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951099 50 + 4267968 AAGCTCATGAAGTTCTCAGCCTGTTTAAATTAAACCATTTTTAATGTATC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929485 21 - 2193130 G-----------------------------TGAACCATTTTTAATTTATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003879 21 - 77216781 G-----------------------------TGAACCATTTTTAATTTATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916479 21 - 80997621 G-----------------------------TGAACCATTTTTAATTTATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1972742 21 + 10377808 G-----------------------------TGAACCATTTTTAATTTATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1859853 21 - 8458610 G-----------------------------TGAACCTTTTTTAATTTATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816193 21 + 75148670 G-----------------------------TGAACCATTTTTAATTTATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2039342 21 + 4244037 G-----------------------------TGAACCTTTTTTAATTTATC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2067519 21 + 4569836 G-----------------------------TGAACCATTTTTAATTTATC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036717 21 - 159171411 G-----------------------------TGAACCATTTTTAATTTATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759088 21 + 3513951 G-----------------------------TGAACCATTTTTAATTTATC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808581 21 + 1920343 G-----------------------------TGAACCATTTTTCATTTATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919560 21 - 7032639 G-----------------------------TGAACCATTTTTAATTTATC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22730287 23 + 28711273 ---------------------------AATTGGACCATTTTTCATTTTCC i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22018877 25 - 122082543 ------GTGAA-------------------TAAATAATTCTTAATCTTCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21346967 19 + 61074082 -----------------------------TTGAATCATTTTTTGGGTC-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 319171 28 - 852752 ----------------------TAACAGACAGAACCTTTTCTTACTTTGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I e micMur3.chr16 35846101 15 - 65901067 I a score=280052.000000 s hg38.chr17_GL383564v2_alt 14817 19 + 133151 TTTTTTCTACCTAATTCAG s panTro5.chr17 16208697 19 + 83181570 TTTTTTCTACCTAATTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116054 19 + 83442489 TTTTTTCTACCTAATTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951149 19 + 4267968 TTTTTTCTACCTAATTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929506 19 - 2193130 TTTTGTCTACCTAATTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003900 19 - 77216781 TTTTTTCTTCCTAATTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916500 19 - 80997621 TTTTTTCTTCCTAATTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1972763 19 + 10377808 TTTTTTCTTCCTAATTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1859874 19 - 8458610 TTTTTTCTTCCTAATTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816214 19 + 75148670 TTTTTTCTTCCTAATTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2039363 19 + 4244037 TTTTTTCTTCCTAATTCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2067540 19 + 4569836 TTTTTTCTTCCTAATTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036738 19 - 159171411 TTTTTTCTTCCTAATTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759109 19 + 3513951 TTTTTTCCACCTAATTCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808602 19 + 1920343 TTTTTTCTACCTAATTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919581 19 - 7032639 TTTTTTCTACCTAATTCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846116 19 - 65901067 TTTTTTCCATCTAATTCAG i micMur3.chr16 I 15 C 0 s otoGar3.GL873537 22730311 19 + 28711273 TTGTTTCTGTCTAATTTAG i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22018902 19 - 122082543 TTTCCCCAACCTCATTTAA i mm10.chr11 C 0 I 5 s canFam3.chr9 21346986 18 + 61074082 -TTTTTTCATCTAGTTTAG i canFam3.chr9 C 0 I 13 s dasNov3.JH570468 319199 18 - 852752 -TTTTTTCATTTAATTAAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2927316 2888 + 8555354 I a score=4973307.000000 s hg38.chr17_GL383564v2_alt 14836 358 + 133151 TGTTTCATAACCATGCCTTCCCAC----------TTAATAAAT--GT-----------AAAGATATCTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAATGTAAATACCAAACTCGTATCATGACTAAAAGACAGCTCATTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAACTTCCCTGCCATCTGTTTTAGATATTCCAAACATCACCTCCCCACTGGGGC--T-----------------------------------------------------AGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACCGTTCCTATTCAAGTATGAGCCCCTGGGCTAAGCTTACCTGCTTTACCTGCC-TGCCAGGTGT-AATACGTTTTAG-CTTCTGAGGAGGAGGGTTTCTCAG s panTro5.chr17 16208716 358 + 83181570 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATATCTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAATGTAAATACCAAACTCGTATCATGACTAAAAGACAGCTCATTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTACCATCTGTTTTAGATATTCCAAACATCACCTCCCCACTGGGGC--T-----------------------------------------------------AGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAAGTATGAGCCCCTGGGCTAAGCTTACCTGCTTTACCTGCC-TGCCAGGTGT-AATACGTTTTAG-CTTCTGAGGAGGAGGGTTTCTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116073 358 + 83442489 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATATCTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAATGTAAATACCAAACTCGTATCATGACTAAAAGACAGCTCATTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTACCATCTGTTTTAGATATTCCAAACATCACCTCCCCGCTGGGGC--T-----------------------------------------------------AGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAAGTATGAGCCCCTGGGCTAAGCTTACCTGCTTTACCTGCC-TGCCAGGTGT-AATACGTTTTAG-CTTCTGAGGAGGAGGGTTTCTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951168 357 + 4267968 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATATCTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAATGTAAATGCCAAACTCGTATCATGACTAAAAGACAGCTCATTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGATATTCCAAACATCACCTCCCCGCTGGGGC--T-----------------------------------------------------AGGGG--GTGATACACAGACTCT-CCAGTTAGAATCACCGTTCCTATTCAAGTATGAGCCCCTGGGCTAAGCTTACCTGCTTTACCTGCC-TGCCAGGTGT-AATACGTTTTAG-CTTCTGAGGAGGAGGGTTTCTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929525 358 - 2193130 TGTTTCATAACCATGACTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACGTAA---TGTTTTAACTTTCAAAAATGTAAATACCAAACTCGTATCATGACTAAAAGACAGCTCATTTCGAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATCACCTCTCCGCTGGGGC--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAAGTATGAGCCCCTGGGCTAAGCTTACCTGTTTTACCTGCC-TGCCAGGTGT-AATACGTTTTAG-CATCTGAGGAGGAGGGTTTCTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30003919 359 - 77216781 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACTTAG---TGTTTTAACTTTCAAAAACGTAAATACCAAACTCATATCATGACTAAAAGACAGCTCATTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATTGCATCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAATATGTTTTAG-CATCTGAGGAGGAGCATTTCTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916519 359 - 80997621 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACTTAG---TGTTTTAACTTTCAAAAACGTAAATACCAAACTCATATCATGACTAAAAGACAGCTCATTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATTGCATCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAATATGTTTTAG-CATCTGAGGAGGAGCATTTCTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1972782 359 + 10377808 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACTTAG---TGTTTTAACTTTCAAAAACGTAAATACCAAACTCATATCATGACTAAAAGACAGCTCACTTCAAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATTGCATCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAATATGTTTTAG-CATCTGAGGAGGAGCATTTCTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1859893 359 - 8458610 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAACGTAAATACCAAACTCATATCATGACTAAAAGACAGCTCATTTCGAATACAGGTTATCCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATTGCATCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAATATGTTTTAG-CATCTGAGGAGGAGTATTTCTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816233 359 + 75148670 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGAGAACTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAACGTAAATACCAAACTCGTATCATGACTAAAAGACAGCTCATTTCGAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAATAGCTTCCCTGACATCTGTTTTAGAGATTCCAAACATTGCACCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTGCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAATATGTTTTAG-CATCTGAGGAGGAGCATTTCTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2039382 359 + 4244037 TGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACTTAA---TGTTTTAACTTTCAAAAACGTAAATACCAAACTCATATCATGACTAAAAGACAGCTCATTTCGAATACAGGTTATGCTTG-TTTTCAAATGACACTTCCTCTAACTAAAACAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATTGCATCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAACATGTTTTAG-CATCTGAGGAGGAGTATTTCTCAG i manLeu1.NW_012106252v1 C 0 M 1150 s colAng1.NW_012122154v1 2067559 359 + 4569836 AGTTTCATAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTTACTTAA---TGTTTTAACTTTTAAAAATGTAAATACCAAACTTGTATCATGACTAAAAGACAGCTCATTTCGAATACAGGTTATGCTTG-TTTTCAAATAATACTTCCTCTAACTAAAATAGCTTCCCTGCCATCTGTTTTAGAGATTCCAAACATTGCATCCCCACTGGGGG--T-----------------------------------------------------TGGGG--GTGATACACAGACTCTCCCAGTTAGAATCACTGTTCCTATTCAGGTACGAGCCCCTGGGCTAAGCCTACCTGCTTTACCTGCC-TGCCAGGTGTAAATATGTTTTAG-CATCTGAGAAGGAGGGTTTCTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46036757 337 - 159171411 TGTTTCAGAACCATGCCTTCCCAA----------TTAATGAAT--AT-----------AAAGATACTTTGCCTTCTCAC-------TGCTTCAGTTTTAAAAAATGTACATACCAAACTAGTATCGTGACTAAAAGACAGCTCCTTTTGAATACAGGTTATGCTTGCTTTTCAAATAACAGTTCCTCTAACCAAAATAG-----CTGCCACCTGTTTTAGAGATTCCAAACATCATCTCCCCTCTGTGGG--T-----------------------------------------------------TGAGG--GGGATACACAGACTT--CCAGTTAGAATCACTATTCCTGTTCAGGCATGCG-CCCTGGGCTAAGACTACTTGCTTTACCTGAC-TGCCAGG-----------TTTAG-CATCTGAGGAGAAGGGTTtctcta i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759128 343 + 3513951 CGTTTCAGAACCATGCCTTCCCAC----------TTAATGAAC--AT-----------AAAGATACCTTGCCTTCTCACTGAATGTTGTTTCAATTTTCAAAGATGTGCACACCCAACTAGTATCGTGACTAAAAGACAGCTCCTTTTGAATACAGGTTATGCTTG-TTTTCAAATAACAATTCCTCTAAACAAAATAG-----CTGCCACCTGTTTTAGAGATTCCAAACATCACCTCCCCGCTGGGGG--T-----------------------------------------------------TGAGG--GGGACACACGGACTC--CCAGTTAGAATCGCTATTCCTATTCAGGCATGAG-CCCTGGGCTAAGACTACTTGCTTTACCTGAC-TGCCAGG-----------TTTAG-CATCTGAGGAGGAGGGTTTCtctg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808621 343 + 1920343 TGTTTCAGAACCATGCCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACCTTGCCTTCTCACTGAATGTTGTTTCAATTTTCAAAACTGTACATACCAAACTAGTATCATGACTAAAAGACAGCTCCTTTCGAATACAGGTTATGCTTG-TTTTCAAATAACAGTTCCTCTAACCAAAATAG-----CTGCCACCTGTTTTAGGGATTCCAAACATCACCTCCCCCCTGGGGG--T-----------------------------------------------------GGAGG--GGGATACACAGACTT--CCAGTTAGAATTACTATTCCTATTCAGGCATGAG-CCCTGGGCTAAGACTACTTGCTTTACCTGAC-TGCCAGG-----------TTTAG-CATCTGAGGAGGAGGGTTTCtcct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919600 343 - 7032639 TGTTTCAGAACCATACCTTCCCAC----------TTAATGAAT--AT-----------AAAGATACTTTGCCTTCTCACTGAACGTTGTTTCGATTTTCAAAAATGTACATACCAAACTAGCATCATGACTGAAAGATAGCTCCTTTCGAATACAGGTTATGCTTG-TTTTCAAATAACAGTTCCTCTAACCAAAATAG-----CTGCCACCTGTTTTGGAGATTCCAAACATCACCTCCCCGCTGGGGG--T-----------------------------------------------------TGAGG--GGGATACACAGACTC--CCAGTTAGAATCACTATTCCTATTCAGGCATGAG-CCCTGGGCTAAGACTACTTGCTTTACTTGAC-TGCCAGG-----------TTTAG-CATCTGAGGAGGAGGGTTTCTCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846135 362 - 65901067 TGTTTCTCAGCCACGCTATCCCCC----------TTAATAAAT--GT-----------AAGGACACCTCGCCTTCTCACTTAACCTTGTCTTAACTTCCAAAAATATAAATGCCAAACTCACATCACGACTAAAAGACGGCTGATTTAGAATACAGGTTATGCTTG-TTTTCCAACGACACTGCCTCTACTCTAGATATCATCCCAGCCACCTGTTTGGGAAATTCCAAACATCACCTCCCCTCTGGGGG--C-----------------------------------------------------TGGGGTGGGGGGACAGAGACGTTTCCATTTAGAATCCCTGTTCCTGTCCAGGGATGAGCCCCGGCGCCAAGCCAACCTGCTT-ACCTGCC-TGCCAGGTGC-CATAACTCTTAG-TACCTGAGGAGGAGCGTTTCTCAG i micMur3.chr16 C 0 I 10 s proCoq1.NW_012135969v1 2930204 362 + 8555354 TGTTTCTTAACCATGCCATCCCAC----------TTAATAAAT--GT-----------AAAGATACCTCGCCTTCTCACTTAACGTTGTCTTAACTTTCAAAAATATAAATACCAAACTCACATTATGACTAAAAGACAGCTTATTTAGAATACAGGTTACACTTG-TTTTCTAATGACACTGCCTCTACCCCGAATATCATCACGGCCACCTGTTTTGGAAATTCCAAACATCACCTCCCCTCTAGGGG--G-----------------------------------------------------TGGGGT-GGGGGACAGAGACGCTCCCATTTAGAATCACCGTTCTTGTCCAGGGGTGAGCCCCGGGGCTAAGCCAACCTGCTTGACCTGTC-TGCCAGGTGG-GATAACTCTTAG-TACCTGAGGAGGAGCGTTTCTCAG i proCoq1.NW_012135969v1 I 2888 I 10 s otoGar3.GL873537 22730330 335 + 28711273 CGTTTCTCTACCACACC-TTCCTC----------TTAATAAAT--GT-----------GAAGATGCTGTGTCTTTTTGCTTAAC---GGCTTAACTTTCAAAAACAGAAATGCCAAACTCATATCACGACTAAAA----GCTTATTTAGAATATAGGTGATGCTTG-TTTTCCAATGACACTCCCTCTACCCCAAATGTCTCCCCTGCCACCTGTTTTGGAAATTCCAAACATCACCTTTCCTCTAGGGGGAG-----------------------------------------------------TTGTGTGGGAGGGCAGAGATGCTCCTGTTTAGAATCACCGTTTCTATTCAGGGATGAGCCCCTGCGTTAA-CCCATCTGCTTTACCTGCCATGTCGGGT------------------------AAGCAGGGTTTCTCAG i otoGar3.GL873537 C 0 I 10 s mm10.chr11 22018926 334 - 122082543 CGCTTCTCCACTATGCCTTCCTTT----------TTAATACAT--AT-----------AAAAATATCTGGTCTTCTTGCTTAATGTTATTCTAACTTTTAAAAACACAAATGCCAAGCTCCCATCAAGGTTGGAGGACGGCTCATTTAGGAGACAGGTTAAGCTTG-TTTTGAAGAGGCACTCCCTCTAACTGAAATATCTTCCCTGACACCTGCTTTAGATACTCCAAACATTGCCTTCCCT---------T-----------------------------------------------------TGGGG--------TACAGACTGTTCTGATGAGAATCACAGTTGCTATTCAGATGTGAGCCTGGGGGCT---------------ATCTATC-TGCCAGGAGG-AGAAGGCCCTAGTCAGAGCAGGAGGAGAGTTTCTCAG i mm10.chr11 I 5 I 1 s canFam3.chr9 21347017 330 + 61074082 TTTTTCTCATCCATGCCTTCTC-T----------TTAACAAAT--GTTAAAAAAACAAAAAAAAAATCTCACTTTTCACTTGATGTTGTTTTAGCTTTCAAAAATATAAATACCAAACCCA-GTCATGGCTAAAAGACAACTCACTTAAAGTATAGGTT--GTTTG-TTTTTAAACGACACTTCCTCTAACCAAAAAATCTTCCTTGCCACCT----------------------CCTCTCCAACAGGGC--G-----------------------------------------------------AGGGG-------------ATCCTCCCTTTGAGAATCGCTG-TCCTGTTCAGGTATGAGCCTCTGGGCT-CGCTCAACCGCTCTACCTGTT-TGTCAGGTGT-GTGAAATCTGAG-CGACTCAGGAGA---GCATCTCAG i canFam3.chr9 I 13 I 10 s dasNov3.JH570468 319217 412 - 852752 CCTTTCTCAATCTTTTTTATCCTCAATAAAGGtattaatttataaat-----------aaaaaaaCCTCATCTTCTCATTTAACATTGTTTTGACTTTCAAAAATACATATACCAAACTCATATCATGACTAAAAGA----TCATTTATTATACAGAATATGCTTG-TTTTCAGATGCCGTTCCCTCTAACAAAAATATCTTCTCTGCCACCTGTTGTGGAGATTCCAAAC----CACCTCCTCtggggg--tgtggggagggtggggtgtggaggtgtgggagggtagctgaggtgggcatggggtgggg--gCAAGAAGCA-ACTCTCCTATTAAGAATCACTGTTCCTATTCTGGTATGAGCCTCTGGGCTAAACCAACCTGCTTTACCTGCC-TGCCAGGTAT-AATAAATCTCCG-TGCCTGAGCAG-----TTTTGCAG i dasNov3.JH570468 C 0 C 0 a score=1282743.000000 s hg38.chr17_GL383564v2_alt 15194 130 + 133151 ----------TGAcccag--gctgct------ctgccctggccccaggcctttgtctgtga-ccccctagtggccagtcccaggtagctatatttcacactcatcctctccaaacttgaatgcagcttct-cccgctctagccagctctt s panTro5.chr17 16209074 130 + 83181570 ----------TGAcccag--gctgct------ctgccctggccccaggcctttgcctgtga-ccccctagtggccagtcccaggtagctatatttcacacttatcctctccaaacttgaatgcagcttct-cccgctctagccagctctt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116431 131 + 83442489 ----------TGACCCAG--GCTGCT------CTGCCCTGGCCCCAGGCCTTTGCCTGTGACCCCCCTAGTGGCCAGTCCCAGGTAGCTATatttcacacttatcctctccaaacttgaatgcagcttct-cccgctctagccagctctt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951525 130 + 4267968 ----------TGAcccag--gctgct------ctgccctggccccaggcctttgcctgtga-ccccctagtggccagtcccaggtagctatatttcacactcatcctctccaaacttgaatgcagcttct-cccactctagccagctctt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1929883 131 - 2193130 ----------TGTCCCAG--GCTGCT------CTGCCCTGGCCCCAGGCCTTTGCCTCTGACCCCGATAGTGGCCAGTCCCAGGTAGCTATatttcacactcatcctctccaaacttgaatgcagcttct-cccgctctagccagctctt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004278 97 - 77216781 ----------TGACCCAG-----------------------------------------GA-CCCCCTAGAGGCGAGTCCCAGGTAGCTAcatgtcacacttatcctctccaaacctgaatgcagcttct-cccgctccagccagctctt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916878 97 - 80997621 ----------TGACCCAG-----------------------------------------GA-CCCCCTAGAGGCCAGTCCCAGGTAGCTAcatgtcacacttatcctctccaaacctgaatgcagcttct-cccgctccagccagctctt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973141 97 + 10377808 ----------TGACCCAG-----------------------------------------GA-CCCCCTAGAGGCCAGTCCCAGGTAGCTAcatgtcacacttatcctctccaaacctgaatgcagcttct-cccgctccagccagctctt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860252 97 - 8458610 ----------TGACCCAG-----------------------------------------GA-CCCCCTAGAGGCCAGTCTCACGTAGCTAcatgtcacacttatcctctccaaacctgaatgcagcttct-cccgctccagccagctctt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816592 97 + 75148670 ----------TGACCCAG-----------------------------------------GA-CCCCCTAGAGGCCAGTCCCAGGTAGCTAcatgtcacactcgtcctctccaaacctgaatgcagcttct-cccgctccagccagctctt i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2067918 130 + 4569836 ----------TGAcccag--gctgct------ctgccctggccccaggcctttgtctctga-ccccctagaggccagtcccaggtagctacatgtcacactcatcctctccaaatctgaatgcagcttct-cccgctccagccagctctt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037094 129 - 159171411 ----------tgacccag--gctgct------ctgtcctggccccaggcc-ttgtctctaa-ccccccagtggccagtcccaggtagctacatttcacactcaccctctccaaacctgaatgcagcttct-cccgctccagccgtctctt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759471 130 + 3513951 ----------tgacccag--gctgct------ctgtcctggccccaggcctttgtctctga-ccccctagtggccagtcccaggtagctacatttcacactcaccctctccaaacctgaacgcagcttct-tccgctccagccatcgctt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1808964 130 + 1920343 ----------cgacccag--gctgct------ccgtcctggccccaggcctttgtctctgg-ccccccagtggcaagtcccaggtagctacatttcacactcaccctctccaaacctgaatgcagcttct-cccgctccagccatctctt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6919943 130 - 7032639 ----------TGACCCAG--GCTGCT------CCGTCCTGGCCCCAGGCCTTTGTCTCTGA-CCCCCCAGTGGCCAGTCCCAGGTAGCTACATTTCACACTCGCCCTCTCCAAACCTGAATGCAGCTTCT-CCCGCTCCAGCCATCTCTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846507 127 - 65901067 ----------CAACACAG--GCTGC-------CTCTCCT-GCCCCAGGCCTTTGTCTCTGA-CCCCCTAGTGGCCAGTCCCAGGTAGCTACATTTCACACTCATCGTCT-AGGACTTGAATGCAGCTTCT-TCCCCTCCAGCATGCTCTG i micMur3.chr16 I 10 C 0 s proCoq1.NW_012135969v1 2930576 130 + 8555354 ----------caacccag--gctact------ctctcctggccccaggcttttgtctctga-ccccctagtggccagtcccaggtagctacatttcacactcattgtctccggacctgaacgcagcttcg-gcccctccagccggctctg i proCoq1.NW_012135969v1 I 10 C 0 s otoGar3.GL873537 22730675 112 + 28711273 ----------CAA---------------------CTCCTGGCCCCAGGCCTTTGTCTCTGA-TCCCCTAGTGGCCACT------TAGCTACATTTCACACTCATTGTCTCCAGACTTGAATGCAGCTTCTAGCCCTTCCTGCCCTTTCTG i otoGar3.GL873537 I 10 I 8 s mm10.chr11 22019261 84 - 122082543 ----------GGGTCCAGATACTGTCTAAGTGCTTATCTGCCTCTAGGCCTTCATTTTGGA-TCCCTGAATGG----------------------CACACT------------------------------TCTCTTCCAGATGGCT--- i mm10.chr11 I 1 C 0 s canFam3.chr9 21347357 124 + 61074082 ----------CAACTCAG--GCTGTT------CTTGCCTTGCTCCAGAC-TTTCCCTTGGA-CCTCCTGGAAGGCAGTCTCACTGGGTCACATTTCACATT------CTCGAAACTCAAATTCAGCATCTTCTCCCTTGAACCAGTTCTT i canFam3.chr9 I 10 C 0 s dasNov3.JH570468 319629 139 - 852752 TAGGTCCAAACCATCCGG--GCAGCT------CTCTCCTGGTACCTGTCCTTTACCTCTGG--CCCCTAGTGGACAGTCCCACTCAGCCACACGGcacactcaccatctccagacttgaactctgcttct-cctcctccagccaactctt i dasNov3.JH570468 C 0 C 0 e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=1228912.000000 s hg38.chr17_GL383564v2_alt 15324 94 + 133151 tcctttgacttctcagctccc--ttg--aagcacacaattgtcctaggaacttgggggtgaccttggggccactttcggtttctcttcctcctttgac s panTro5.chr17 16209204 94 + 83181570 tcctttgacttctcagctccc--ttg--aagcacacaattgtcctaggaacttgggggtgaccttggggccactttcggtttctcttcctcctttgac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116562 94 + 83442489 tcctttgacttctcagctccc--ttg--aagcacacaattgtcctaggaacttgggggtgaccttggggccactttcggtttctcttcctcctttgac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951655 94 + 4267968 tcctttgacttctcagttccc--ttg--aagcacacaattgtcctaggaacttgggggtgaccttggggccactttcggtttctcttcctcctttgac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1930014 94 - 2193130 tcctttgacttctcagctccc--ttg--aagcacacaattgtcctaggaacttggggatgaccttggggccacttttggtttcactttctcctttgat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004375 94 - 77216781 tcctttgacttcttagcttcc--ttg--acgcacacaattgtcctaggaacttgggggtgaccttggggccactttcggcttctcttcttcctttgac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27916975 94 - 80997621 tcctttgacttcttagcttcc--ttg--acgcacacaattgtcctaggaacttgggggtgaccttggggccactttcggcttctcttcttcctttgac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973238 94 + 10377808 tcctttgacttcttagcttcc--ttg--atgcacacaattgtcctaggaacttgggggtgaccttggggccactttcggcttctcttcttcctttgac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860349 94 - 8458610 tcctttgacttcttagcttcc--ttg--acgcacacaattgtcctaggaacttgggggtgaccttggggccactttcggcttctcttcttcctttgac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816689 94 + 75148670 tcctttgacttcttagcttcc--ttg--aagcacacaattgtcctaggaacttgggggtgaccttggggccacttttggcttctcttcctcctttgac i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2068048 94 + 4569836 tcctttgacttcttagcttcc--ttg--aggcacacaattgtcctaggaacttgggggtgaccttggggccacttttggcttctcttcctcctttgac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037223 94 - 159171411 tcctctgactttccagctccc--tgg--aagcacacgattgtcctaggaacttggggatgacctcggggtcacttttggtttctcttcctccttcgac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759601 94 + 3513951 tcctctgacttcccagctccc--tgg--aagcacacgattgtcctaggaacttgggggtgatctcggggccatttttggtttctcttcctcctttgac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1809094 94 + 1920343 tcctctgacttcccagctccc--tgg--aagcacacgattgtcctaggaacttgggggtgacctcgggaacacttttggtttctcttcctcctttgac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6920073 94 - 7032639 TCCTCTGACTTCCCGGCTCCC--TGG--AAGCACATGATTGTCCTAGGAACTTGGGGGTGACCTCGGGGCCACTTCTGGTTTCTCTTCCTCCTTTGAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846634 94 - 65901067 TCCCTTGACTTCCCAGCTGCC--CTG--AAGTACATGATTGTTCTAGCAACCCAGGGGTGGCCTCAGGGCCACTTTCGGTTTCTCTCCCTCCTTTGAC i micMur3.chr16 C 0 I 1 s proCoq1.NW_012135969v1 2930706 94 + 8555354 tcccttgacttccctgctccc--cgg--aagtacacgattgttctaggaacacaggggtggcctcagggccactttttgtttctctccctcctttgac i proCoq1.NW_012135969v1 C 0 I 2927 s mm10.chr11 22019345 87 - 122082543 TCCCTTAACTTCCCACTTCTC--TTT--AAGCATGTAACTGTCCT-----CCAATAGGAGATCT--ATGCCCCCTTTGATTTTTCTCCCTCCCCTGAC i mm10.chr11 C 0 I 1 s canFam3.chr9 21347481 93 + 61074082 TGCCTTGACATCTTGACTTCC--TTTTCCACCATATTATTGTCCCAGGAACCCAGG---GACCAGAAGGACACTTTTGATGTCTCTCTCTCCTTTGAC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 319768 95 - 852752 tctcctgacttcccagcttcccttcg--tggcacatcattgtcccaggaacgcaggagtgacctctgggccacttt-gatttctctgcctcctttgac i dasNov3.JH570468 C 0 I 1 e otoGar3.GL873537 22730787 8 + 28711273 I e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=935678.000000 s hg38.chr17_GL383564v2_alt 15418 91 + 133151 cccatatacagtaattctccctgtcttgtagagtccttctgcagca----t-------------ctatgtcctttgtgccttcctttacttcagcactgctggtggct s panTro5.chr17 16209298 91 + 83181570 cccatatacagtaattctccctgtcttgtagagtccttctgcagca----t-------------ctatgtcctctgtgccttcctttacttcagcactgctggtggct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116656 91 + 83442489 cccatatacagtaattctccctgtcttgtagagtccttctgcagca----t-------------ctatgtcctctgtgccttcctttacttcagcactgctggtggct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951749 91 + 4267968 cccatatacagtaattctccctgtcttgtagagtccttctgcagca----t-------------ctatgtcctctgtgccttcctttacttcagcactgctggtggct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1930108 91 - 2193130 cccatatacagtaattcgccctgtcttgtagagtccttttgcagca----t-------------ttatgtcctctgtgccttcctttacatcagcactgctggtggct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004469 90 - 77216781 cccatgtacagtaagttgccctgtcttgt-gagtccttttgcagca----t-------------ctgtgtcctctgtgccttcctttccatcagcactgctggtggct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27917069 90 - 80997621 cccatgtacagtaagttgccctgtcttgt-gagtccttttgcagca----t-------------ctatgtcctctgtgccttcctttccatcagcactgctggtggct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973332 90 + 10377808 cccatgtacagtaagttgccctgtcttgt-gagtccttttgcagca----t-------------ctatgtcctctgtgccttcctttccatcagcactgctggtggct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860443 90 - 8458610 cccatgtacagtaagttgccctgtctggt-gagtccttttgcagca----t-------------ctatgtcctctgtgccttcctttccatcagcactgctggtggct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816783 90 + 75148670 cccatgtacagtaagtcgccctgtcttgt-gagtccttttgcagca----t-------------ctatgtcctctgtgccttcctttccatcagcactgctggtggct i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2068142 91 + 4569836 tccatgtacagtaagtcgccctgtcttgtagagtccttttgcagca----t-------------ctatgtcctctgtgccttcctttccatcagcactgctggtggct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037317 91 - 159171411 cccacatacagtaagtcgccctgtcttgtagagaccttccgcagca----t-------------ctctgtcctctgtgccttctttaacatcagcactgctggtggct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759695 91 + 3513951 cccatatacagtaagtcgccctgtcttgtagagaccttccgcagca----t-------------ctctgtcctctgtgccttcttttacatcagcactgctggtggct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1809188 91 + 1920343 cccatatacagtaagtcaccctgtcttgtagagaccttctgcagca----t-------------ctctgtcctctgtgccttcttttatatcagcactgctggtggct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6920167 91 - 7032639 CCCATATACAGTAAGTCGCCCTGTCTTGTAGAGTCCTTCCACAGCA----T-------------CTCTGTCTTCTTTGCCTTCTTTTACATCAGCACTGCTGGTGGCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846729 91 - 65901067 CCTACGTACAGTAAATCACCCAGCCTTGGAGAGCCCTTTTGTCACA----T-------------GTCTGTCCTCTGTGCCTTCCTTTCCATCGGCACTGCTGGTGGCT i micMur3.chr16 I 1 C 0 s mm10.chr11 22019433 84 - 122082543 ACCCTATAC-TCAAATTGCTCAGCTCCA--GGACATCTCTG----A----C-------------CCATGACCTTCCTGTTCTTCCTCCTGGCAGTACTGATGGTAGCT i mm10.chr11 I 1 I 314 s canFam3.chr9 21347575 96 + 61074082 TCCATATACAGCAAATCACTCAGCCTTGTAGAGTCTTTTGGTAGAG----TCCTCTTCTAATGCCTCTGCCCCCTCATCCCTCCTTCCTTTTGGCACTGC-------- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 319864 89 - 852752 cccatagcccattaaccaaccaggccggctgggtgttttggcagaagactt-------------ttgtgacatccctgtcttcctttc------cactgctggtggct i dasNov3.JH570468 I 1 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e otoGar3.GL873537 22730787 8 + 28711273 I e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=96112.000000 s hg38.chr17_GL383564v2_alt 15509 8 + 133151 ggttttgg s panTro5.chr17 16209389 8 + 83181570 gggtttgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116747 8 + 83442489 gggtttgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951840 8 + 4267968 ggttttgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1930199 8 - 2193130 ggttttgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004559 8 - 77216781 ggttttgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27917159 8 - 80997621 ggttttgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973422 8 + 10377808 ggttttgg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860533 8 - 8458610 ggttttgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816873 8 + 75148670 ggttttgg i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2068233 8 + 4569836 ggttttgg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037408 8 - 159171411 ggttctgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759786 8 + 3513951 ggttttgg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1809279 8 + 1920343 ggttttgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6920258 8 - 7032639 GGTTTTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35846820 8 - 65901067 GGTTTTGG i micMur3.chr16 C 0 I 228 s canFam3.chr9 21347671 3 + 61074082 -----TGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 319953 8 - 852752 agttttgg i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22019517 314 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e otoGar3.GL873537 22730787 8 + 28711273 I e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=1900078.000000 s hg38.chr17_GL383564v2_alt 15517 202 + 133151 gttccatcacatcctgcctggattcttgtaagagcctcctc---------ctg------ctctcttctgtgccaggtttgttctgcacacaccaccagCCCTTCACTCTTTTGTGTTCTatttattgagtaaatattatgtacaaggcactgtattgcatgctagagagcatacgaaatgaagatggagtgttcccactccagggtgcacactgggc s panTro5.chr17 16209397 202 + 83181570 gttccatcacatcctgcctggattcttgtaagagcctcctc---------ctg------ctctcttctgtgccaggtttgttctgcacacaccaccagCCCTTCACTCTTTTGTGTTCtatttattgagtaaatattatgtacaaggcactgtattgcatgctagagagcatacgaaatgaagatggagtgttcccactccagggtgcacactgggc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116755 202 + 83442489 gttccatcacatcctgcctggattcttgtaagagcctcctc---------ctg------ctctcttctgtgccaggtttgttctgcacacaccaccagCCCTTCACTCTTTTGTGTTCtatttattgagtaaatattatgtacaaggcactgtattgcatgctagagagcatacgaaatgaagatggagtgttcccactccagggtgcacactgggc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3951848 202 + 4267968 gttccatcacatcctgcctggattcttgtaagagcctcctc---------ctg------ctctcttctgtgccaggtttgttctgcacacaccaccagCCCTTCACTCTTTTGTGTTCtatttattgagtaaatattatgtacaaggcactgtattgcatgctagagagcatacgaaatgaagATGGAGTGTTCCCACTCCAGGGTGCACACTGGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1930207 202 - 2193130 gttccatcacatcctgcctggattcttgtaagagcctcctc---------ctg------ccctcttctgtgccaggtttgttctgaacacaccaccagCCCTTCGCTCTTTTGTGTTCtatttattgagtaaatattatgtacaaggcactgtattacatgctagagaGCATACAAAATGGAGATGGAGTGTTCCCACTCCAGGGTGCACACTGGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004567 206 - 77216781 catccatcacatcctgcctggattcttggaagagccccctc---------gtgccct--ctctcttcTGTGCCGGATTTGTTCTGCACATACCACCAGCCCGTCACTCTTTTGTGTTCtatttattgagtaaatactatgtacaagacactgtattacgtgctggagggcacacgaaATGGAGACTGAGTGTTCCCACTCTAGGGTGCACACTGGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27917167 206 - 80997621 catccatcacatcctgcctggattcttggaagagccccctc---------ctgccct--ctctcttcTGTGCCGGATTTGTTCTGCACATACCACCAGCCCGTCACTCTTTTGTGTTCtatttattgagtaaatactatgtacaagacactgtattacgtgctggagGGCACACGAAATGGAGACTGAGTGTTCCCACTCTAGGGTGCACACTGGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973430 206 + 10377808 catccatcacatcctgcctggattcttggaagagccccctc---------ctgccct--ctctcttcTGTGCCGGATTTGTTCTGCACATACCACCAGCCCGTCACTCTTTTGTGTTCtatttattgagtaaatactatgtacaagacactgtattacgtgctggagggcacacgaaATGGAGACTGAGTGTTCCCACTCTAGGGTGCACACTGGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860541 206 - 8458610 catccatcacatcctgcctggattcttggaagagccccctc---------ctgccct--ctctcttcTGTGCCGGATTTGTTCTGCACATACCACCAGCCCGTCACTCTTTTGTGTTCtatttattgagtaaatactatgtacaagacactgtattacgtgctggagggcacacgaaATGGAGACCGAGTGTTCCCACTCTAGGGTGCACACTGGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64816881 206 + 75148670 catccatcacatcctgcctggattcttggaagagccccctc---------ctgccct--ctctcttcTGTGCCGGATTTGTTCTGCACACACCACCAGCTCATCACTCTTTTGTGTTCtatttattgagtaaatactatgtacaagacactgtattacgtgctggagGGCACACGAAATGGAGACTGAGTGTTCCCACTCTAGGGTGCACACTGGGC i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2068241 206 + 4569836 catccatcacatcctgcctggattcttggaagagccccctc---------ctgccct--ctctcttcTGTGCTGGATTTGTTCTGCACACACCACCAGCCTTTCACTCTTTTCTGTTCtatttattgagtaaatattatgcacaaggcactgtattacgtgctggagagcatacgaaATGGAGACTGAGTGTTCCCACTCTAGGGTGCACACTGGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037416 206 - 159171411 cttccatcacctgctgcctggattcttgtaagagcctcctc---------ctgccct--gtctcttctgtgtcaagttcattctacacataccaccagCCCTTCACTCTTTCGTGTTCtatttattgagcaaatattatgtatcagacactgtattacatgctagagagcatagGAAATAGAGATTGGGTGTCCCCAGTCCAGGGTGCACACTGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1759794 206 + 3513951 cttccatcacctgctgcctggattcttgtaagagcctcctc---------ctaccct--gtctcttctgtgccaagtttgttctgcacacaccaccagCCCTTCACTCTTTCATGTCCTATTGATTGAGTAAATATCATGTACCAGACACTGCATGACATGCTAGAGAGCATACGAAATAGAGATTGGGTGTCCCCACTCCACGGTGCACACTGGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1809287 206 + 1920343 cttccatcacctgctgcctggattcttgtaagagcctcctc---------ctgccct--gtctcttccgtgccaagttcgttctgcacacatcaccagCCCTCCACTCTTTCATGTTCtattgattgagtaaatattatgtaccagacactgtattacatgctagagagcatacgaaatagAGATTGGGTGTCCCCACTCCAGGGTGCAAACTGGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6920266 206 - 7032639 CTTCCATCACCTGCTGCCTGGATTCTTGTAAGAGCCTCCTC---------CTGCCCT--GTCTCTTCTGTGCCAAGTTCGTTCCGCACACACCACCAGCCCTTCACTCTTTCATGTTCtattgattgagtaaatattatgtaccagacactgtattacgtgctacagagcatacgaaatagAGATTGGGTGTCCCGACTCCAGGGTGCACACTGGTC i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21347674 199 + 61074082 ATTTCATCACGTGCTGCCAGGGGGCTTCTAAGAGCCTCCTCCTCTTCCATCTGCCTT--ACCTCCTCTGTACCAAGTTTATCTTGCACGCACCACCAGCCTTTCATGGGCTCGTTTAACAGTTCCTGAGTATGAATTATGTACTGGGCACTGCAGTATGTGTTAG----------------AGATGCAGCGTTCCCATCCCGGGGTGCATTATGGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 319961 174 - 852752 tttccatcacgtcctgtggggggtactgtaagaccttcctc---------ctgccccaagtctcttctgcattgagtctatcct-------------GCCTTACACTC-TTCATTTAATATTTTTTGAGTATATATTATGTG--------------------TTGGGAGCATATACAATGGAGATGAAGAgttcccaacctaggctgcacattgggc i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22019517 314 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35846828 228 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=-8613.000000 s hg38.chr17_GL383564v2_alt 15719 5 + 133151 agtgg- s panTro5.chr17 16209599 5 + 83181570 agtgg- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116957 5 + 83442489 agtgg- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952050 5 + 4267968 AGTGG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1930409 3 - 2193130 A--TG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004773 3 - 77216781 A--TG- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27917373 3 - 80997621 A--TG- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973636 3 + 10377808 A--TG- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860747 3 - 8458610 A--TG- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817087 3 + 75148670 A--tg- i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2068447 3 + 4569836 A--TG- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037622 3 - 159171411 A--TG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760000 3 + 3513951 A--tg- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1809493 3 + 1920343 A--TG- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6920472 3 - 7032639 A--TG- i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 320135 5 - 852752 -actgg i dasNov3.JH570468 C 0 I 8 e mm10.chr11 22019517 314 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35846828 228 - 65901067 I e canFam3.chr9 21347873 0 + 61074082 C e otoGar3.GL873537 22730787 8 + 28711273 I e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=4969003.000000 s hg38.chr17_GL383564v2_alt 15724 633 + 133151 t-aaaaggaaaatggggccgggcgcagtggttcacgcgtgtaatcctagcactttgggaggccgaggcaggtggatcatctgaggtcaggagtttgagaccagcctgaccaacatggtgaaacctcgtctctactaaaaa--------tacaaaatcagccaagcatggtggcacatgcctgtaatcccaactacgccagaggcggaggcaggagaatcacttgaacccgggaggcggaggttgtagtgagctgagatcacgccactgcactccagcctgggcgacagagcgagactccgtctaaaacaataacaacaacaaaaacaaaacaaataaacaaacaaaaa-agaaaatgaaatgtcagggctttctaaatttattatgccgaagtgaaaaattaagccttggaaactgggtcatgcgatatagctgttcttcttctCTCCTGCAAAGACAGTTGCTTCCTGACTTGTGTGTTGACAtgttgcatagtaacc-agactcccttgtctgtattcaaacctagagtaaatgacattggagaaggaggcccttgtgactgctacctttttacaatagaatgttaagcaaccccatgagagtgtaatcaatagcggtcaatcagatcttacatctgtacac s panTro5.chr17 16209604 631 + 83181570 t-aaaaggaaaatggggccgggcgcagtggttcacgcgtgtaatcctagcactttgggaggccgaggcaggtggatcatctgaggtcaggagtttgagaccagcctgaccaacatggtgaaacctcgtctctactaaaaa--------tacaaaatcagccaagcatggtggcatgtgcctgtaatcccaactacgccagaggcggaggcaggagaatcacttgaacctgggaggcggaggttgtagtgagctgagatcacgccactgcactccagcctgggtgacagagcgagactccgtctaaaacaataacaacaacaaaaacaaaacaaa--aacaaacaaaaa-agaaaatgaaatgtcagggctttctaaatttattatgccgaagtgaaaaattaagccttggaaactgggtcatgcgatatagctgtttttcttctCTCCTGCAAAGACAGTTGCTTCCTGACTTGTGTGTTGACAtgttgcatagtaacc-agactcccttgtctgtattcaaacctagagtaaatgacattggagaaggaggcccttgtgactgctacctttttacaatagaatgttaagcaaccccatgagagtgtaatcgatagcagtcaatcagatcttacatctgtacac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16116962 631 + 83442489 t-aaaaggaaaatggggccgggcgcagtggttcacgcgtgtaatcctagcactttgggaggccgaggcaggtggatcatctgaggtcaggagtttgagaccagcctgaccaacatggtgaaacctcgtctctactaaaaa--------tacaaaatcagccaagcatggtggcatgtgcctgtaatcccaactacgccagaggcggaggcaggagaatcacttgaacctgggaggcggaggttgtagtgagctgagatcacgccactgcactccagcctgggtgacagagcgagactccgtctaaaacaataacaacaacaaaaacaaaacaaa--aacaaacaaaaa-agaaaatgaaatgtcagggctttctaaatttattatgccgaagtgaaaaattaagccttggaaactgggtcatgcgatatagctgtttttcttctCTCCTGCAAAGACAGTTGCTTCCTGACTTGTGTGTTGACAtgttgcatagtaacc-agactcccttgtctgtattcaaacctagagtaaatgacattggagaaggaggcccttgtgactgctacctttttacaatagaatgttaagcaaccccatgagagtgtaatcgatagcagtcaatcagatcttacatctgtacac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952055 631 + 4267968 T-AAAAAGAAAATGGggccgagcgcagtggttcacgcatgtaatcctagcactttgggaggccgaggcaggtggatcatctgaggtcaggagtttgagaccagcctgaccaacatggtgaaacctcgtctctactaaaaa--------tacaaaatcagccaagcatggtggcacgtgactgtaatcccaactacgccagaggcggaggcaggagaatcacttgaacccgggaggcggaggttgtagtgagctgagatcacgccactgcactccagcct-ggtgacagagcgagactctgtctaaaacaataacaacaac-aaaacaaaacaaaTAAACAAACAAaaa-agaaaatgaaatgtcagggctttctaaatttattatgccgaagtgaaaaattaagccttggaaactgggtcatgcgatatagctgtttttcttctCTCCTGCAAAGACAGTTGCTTCCTGACTTGTGTGTTGACAtgttgcatagtaacc-agactcccttgtctgtattcaaacctagagtaaatgacattggagaaggaggcccttgtgactgctacctttttacaatagaatgttaagcaaccccatgagagtgtaatcaatagcagtcaatcagatcttacatctgtacac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1930412 617 - 2193130 T-AAAAAGAAAATGGGGCCGGG------------cgcgtgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggccaggagttcgagaccagcctgaccaacatggtgacacctcgtctctactaaaaatacaaaattacaaaattagccgagcatggtggcatgtgcctgtaatcccaactatgccggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgtagtgagccgagatcacaccactgcactccagcctgggcgacagagtgagactccatctaaaacaacaacaacaacaa--------------aacaaacaaaaaGAgaaaatgaaatgtcagggctttctaaatttattacgccaaagtgaaaaatcaagccttggaaactgggtcatgccatatagctgtttttcttctCTCCTGCAAAGACTGTTGCTTCCTGACTTGGGTGTTGACATGTTGCATGGTAACCAAGACTCCCTTGTCTATATTCAAACCTagagtaaatgacattggagaaggaggcccttgtgactgctacctttttacaatagaatgttaagcaactccatgagagtgtaatcaatagcagtcaatcagatcttacatctgtacat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30004776 623 - 77216781 TAAAAAAAAAAATGGggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaacttcgtctctactaaaaa--------taaaaaatcagccgagcatggtggcgcatgcctataatcccagctacgtcggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagccgagatcgcaccactgcactccagcctgggcgacagagcgatactccatctaaaaacaaaacaa-aac------aaaacaaacaaacaaacaa----agaaaatgaaatgtcagggctttctaaatttattatgccaaggtg-aaaattaagcctgggaaactgggtcatgccatatagctgtttttcttctctccTGCAAGGACTGTTGCTTCCTGACTTGTGTGTTGACATGTTGCACAGTAACC-AGACTCCCTTGTTTGTATTCAAACCTGGAGTAAATGACATTGGAGAAGGAGGCccttgtgactgctgcctctttacaacagaatgttaagcatccccacgagagtgtaatcaacagcagtcaatcagatcttacatctgtacat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27917376 623 - 80997621 TAAAAAAAAAAATGGggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaacttcgtctctactaaaaa--------taaaaaatcagccgagcatggtggcgcatgcctataatcccagctacgtcggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagccgagatcgcaccactgcactccagcctgggcgacagagcgatactccatctaaaaacaaaacaa-aac------aaaacaaacaaacaaacaa----agaaaatgaaatgtcagggctttctaaatttattatgccaaggtg-aaaattaagcctgggaaactgggtcatgccatatagctgtttttcttctcttcTGCAAGGACTGTTGCTTCCTGACTTGTGTGTTGACATGTTGCACAGTAACC-AGACTCCCTTGTTTGTATTCAAACCTGGAGTAAATGACATTGGAGAAGGAGGCccttgtgactgctgcctctttacaacagaatgttaagcatccccatgagagtgtaatcaacagcagtcaatcagatcttacatctgtacat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1973639 623 + 10377808 TAAAAAAAAAAATGGggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaacttcatctctactaaaaa--------taaaaaatcagccgagcatggtggcgcatgcctataatcccagctacgtcggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagccgagatcgcaccactgcactccagcctgggcaacagagcgatactccatctaaaaacaaaacaa-aac------aaaacaaacaaacaaacaa----agaaaatgaaatgtcagggctttctaaatttattatgccaaggtg-aaaattaagcctgggaaactgggtcatgccatatagctgtttttcttctctccTGCAAGGACTGTTGCTTCCTGACTTGTGTGTTGACATGTTGCACAGTAACC-AGACTCCCTTGTTTGTATTCAAACCTGGAGTAAATGACATTGGAGAAGGAGGCccttgtgactgctgcctctttacaacagaatgttaagcatccccacgagagtgtaatcaacagcagtcaatcagatcttacatctgtacat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1860750 621 - 8458610 T-AAAAAAAAAATGGggccaggcgcagtggctcatgcctgtaatcccagcactttgggaggccgagtcgggtggatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaactttgtctctactaaaaa--------taaaaaatcagccgagcatggtggcgcatgcctataatcccagctacgtcagaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagccgagatcgtgccactgcactccagcctgggcgactgagcgatactccatctaaaagcaaagcaa-aac-------aaacaaacaaacaaaCaa----agaaaatgaaatgtcagggctttctaaatttattatgccaaggtg-aaaattaagcctgggaaactgggtcatgccatatagctgtttttcttctctccTGCAAGGACTGTTGCTTCCTGACTTGTGTGTTGACATGTTGCACAGTAACC-AGACTCCCTTGTTTGTATTCAAACCTGGAGTAAATGACATTGGAGAAGGAGGCTCTTGtgactgctgcctctttacaacagaatgttaagcatccccacgagagtgtaatcaacagcggtcaatcagatcttacatctgtacat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817090 627 + 75148670 t-aaaaaaaaaatggggccgggtgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaacttcgtctctactaaaaa--------taaaaaatcagccgagcatggtggcgcatgcctataatcccagctatgtcagaggctgaggcaggagaatcacttgaacccaggaggtggaggttgtagtgagccgagatcgcgccagtgcactccagcctgggcgactgagtgatactccatctaaaaacaaaacaa-aac-aaaacaaaacaaacaaacaaacaa----aGAAAATGAAAtgtcagggctttctaaatttattatgccaaggtg-aaaattaagcctgggaaactgggtcatgccatatagctgtttttcttctctccTGCAAGGACTGTTGCTTCCTGACTTGTGCGTTGACATGTTGCACAGTAACC-AGACTCCCTTGTCTATATTCAAACCTGGAGTAAATGACATTGGAGAAGGAGGCccttgtgactgctgcctctttacaacagaatgttaagcatccccacgagagtgtaatcaacagcagtcaatcagatcttacgtctgtacat i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2068450 616 + 4569836 T--AAAAAAAAATGGggctgggcgcagtggctcatgcctgtaatcctagcactttgggaggccgaggcgggtggatcacctgaggtcaggagtttgagaccagcctgactaacatggtgaaactttgtctctactaaaaa--------taaaaaatcaaccgagcatggtggcgcatgcctataatcccagctacgtcggaggctgaggcaggagaatcgtttgaacccaggaggcaaaggttg-agtgagccgagatcgcaccactgcactccagcctgggcgacagagcgatactccatctaaaaacaaaacaa-aac------a----aaacaaacaaacaa----AGaaaatgaaatgtcagggctttttaaatttattatgctcaggtg-aaaattaagcctgggaaactaggtcaTGCCATATAGCTGTTTTTCTTCTCTCCTGCAAGGACTGTTGCTTCCTGACTTGTGTGTTGACATGTTGCACAGTAACC-AGACTCCTTTGTCTATATTCAAACCTGGAGTAAATGACATTGGAGAAGGagggccttgtgactgctgcctctttacaacagaatgttaagcatcctcacgagagtgtaatcaatagcagtcaatcagatcttacatctgtacat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46037625 606 - 159171411 T-Aaaaagaaaattaggct-ggcactgtggcttacgcctgtaattccagcattttgggaggccgaggcaggtggatcgcctgaggtctggagtttgagaccagcctgaccaacgtggtaaaatcccatctctactaaaaa--------tacaaaattagccaagcgtggtggcacatgcctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacc-aggaggcagaagttgcagtgagccgagatcgcgccactacactccagccagggtgacaaagcaagactccacgttaa-----aaaaa-aaa----------------aaaaaaaaa----agaaaatgaaatgtcagggctttctaaatttattatgccacagtgaaaagttaagccttggaaactgggtcatgccatatagctgtttttcttctctCTTGCAAGGACTATTGCTTCCTGGCTTGTGTGTTGACATATTACATAGTAATC-AGACTCCCTGGTCTATATTCAAACCTGGAGTAAATGACAGTGGAGAAGGAGGCCCTTGTGAGGGCTACTGCTTTACATTAGAATGTTaagcaaccccctgagagtgtaatcaatagcagccaatcaaatcttgtatctgtacat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760003 606 + 3513951 t-aaaaggaaaatgaggct-ggcaccgtggctcacacctgtaatcccagcacttcgggaggccgaggcaggcggatcgcctgaggtcaggagtttgagaccagcctgaccaacgtggtgaaatcccgtctttactaaaaa--------tataaaattagccaagcatggtgacacatgcctgtaatcccagctactctggaggctgaggcaggagaattgcttgaacc-aggaggcggaggttgcggtgagccgagatcacaccactacactccagcttgggtgacagagcaagactccatgttaa-----aaaaa-aaa----------------aaaaaaaaa----agaaaatgaaacatcagggctttctaaatttattatgccacggtgaaaagttaagccttggaaactgggtcatgccatatagctgtttttcttctctCTTGCAAGGACTATTGCTTCCTGGCTTGTGTGTTGACATATTATATAGTAATC-AGACTCCCTGGTCTATATTCAAACCTAGAGTAAATGTCATTGGAGAAGGAGGCCCTTGTGAGGGCTAGCACTTTACATTAGAATGTTaagcaaccccttgagagtgtaatcaatagcagccaatcaaatcttgtatctgtacat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1809496 594 + 1920343 T-Aaaaagaaaatgaggct-ggcaccatggttgatgcctgtaatcccagcactttgggaggccaaggcgggtggatcgcctgaggtcaggagtttgagaccagcctgatcaacgtggtgaaatcccatctctactaaaaa--------tacaaaattagccaagcgtggtggcacatgcctgtaatcccagctactctggaggctgaggtaggagaactgcttgaacc-aggaggcagaggttgcagtgagcagagatctaaccactacactccagcctgggtgacagagcaagactccatgt--------------aaa----------------aaaaaaaaa----agaaaatgaaatgtcagggctttttaactttattatatcgaggtgaaaagttaagccttggaaactgggtAATGCCATATAGCTGTTTTTCTTTTCTCTTGCAAGGACTATTGCTTCCTGGCTTGTGTGTTGACATATTACAT----ATC-AGACTCCCTGGTCTATGTTCAAACCTAGAGTAAATGACATTGGAGAAGGAGGCCCTTGTGAGGGCTACTGCTTTACATtagaatgttaagcaaccccccgaaagtgtaatcaatagcagccaatcaaatcttgtatccgtacat i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6920475 599 - 7032639 T-AAaaagaaaacaaggct-ggcgccatggcttacgcctgtaatcccagcattttgggaggctgaggcgggtggatcgcctgaggtcaggagtttgagaccagcctgaccaacgtggtgaaatcccgtctctactaaaaa--------tacaaaattagccaaccgtggtggcacatgcctgtaatcccagctactctggaggctgaggcaggagaatcacttgaacc-aggaggcggaggttgcagtgaaccgagatcgctccactacactctagcctgggtcacagagcaagactccatgt------------a-aaa----------------aaaaaaaaa----agaaaatgaaatgtcagggctttccaaatttattatgccacagtgaaaagttaagccttggaaactgggtcatgccatatagctgtttttcttctctccTGCAAGGACTGTTGCTTCCTGGCTTGTGTGTTGACATATTACATAGTAATC-AGACTCCCTGGTCTATATTCAAACCTAGAGTAAATGACATTGGAGAAGGAGGCCCTTGTGAGGGCTCCCGCTTTACATTAGAATGTTaagcaaccccctgagagtgtaatcaatagcagccaatcaaatcttgtacctgtacat i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22019517 314 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35846828 228 - 65901067 I e dasNov3.JH570468 320140 8 - 852752 I e canFam3.chr9 21347873 0 + 61074082 C e otoGar3.GL873537 22730787 8 + 28711273 I e manLeu1.NW_012106252v1 2039741 1150 + 4244037 M a score=1959383.000000 s hg38.chr17_GL383564v2_alt 16357 207 + 133151 tagcctttgtgtggaaaacgtc---------------------------gtaattctgttcagcacctctatttttgcctatataagtgatcttcatt-----ttccccctgcactgggagtactgattgccattcttcggtgttcgt-gtgtccccagaagacggctctcacatgccatgcttgaaaaaactctttttaaccagatcctgagccttttgattattttaggttgacagGC s panTro5.chr17 16210235 206 + 83181570 tagcctttgtgtggaaaatgtc---------------------------gtaattctgttcagcacctctatttttggctatataagtgatcttcatt-----ttccccctgcactgggagtactgattgccattctttggtgttcgt-gtgtccccagaagatggctctcacatgccatgcttgaaaaaactctttt-aaccagatcctgagccttttgattattttgggttgacagGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16117593 206 + 83442489 tagcctttgtgtggaaaatgtc---------------------------gtaattctgttcagcacctctatttttggctatataagtgatcttcatt-----ttccccctgcactgggagtactgattgccattctttggtgttcgt-gtgtccccagaagatggctctcacatgccatgcttgaaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952686 207 + 4267968 tagcctttgtgtggaaaacgtc---------------------------ataattctgttcagcacctctatttttgcctatataagtgatcttcatt-----tcccccctgcactgggagtactgattgccattcttcggtgttcgtggtgtccccagaagatggctctcacatgccatgcttgaaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931029 206 - 2193130 tagcctttgtatggaaaacgtc---------------------------gtaattctgttcagcacctctatttttgtctatataaatgatcttcatt-----ttccccctgcactgggagtactgattgccattcttcggtgttcat-gcatccctagaagacggctctcacatgccatgcttgaaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005399 206 - 77216781 tagcctttgtatggaaaacgtt---------------------------gtaattctgttcggcacctctatttctgcctatataaatgatcttcact-----ttccccccgcactgggagtactgattgccattcttcggtgttcgt-gtgtccccagaagacggctctcacgtgccatgtttgcaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27917999 206 - 80997621 tagcctttgtatggaaaacgtt---------------------------gtaattctgttcggcacctctatttctgcctatataaatgatcttcact-----ttccccccgcactgggagtactgattgccattcttcggtgttcgt-gtgtccccagaagacggctctcacgtgccatgtttgcaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974262 206 + 10377808 tagcctttgtatggaaaacgtt---------------------------gtaattctgtttggcacctctatttctgcctatataaatgatcttcact-----ttccccccgcactgggagtactgattgccattcttcggtgttcgt-gtgtccccagaagacagctctcacgtgctatgtttgcaaaaactctttt-aaccagatcctgagccttttgattatttcaggttgacagAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861371 206 - 8458610 tagcctttgtatggaaaacatt---------------------------gtaattctgttcggcacctctatttctgcctatataaatgatcttcact-----ttccccccgcactgggagtaccgattgccattcttcggtgttcgt-gtgtccccagaagacggctctcacgtgccatgcttgcaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817717 206 + 75148670 tagcctttgtatggaaaacgtt---------------------------gtaattctgttcggcacctctatttctgcctatataaaagatcttcact-----ttccccccgcactgggagtactgattgccattgttcggtgttcgt-gtgtccccagaagacggctctcacgtgccatgcttgcaacaactctttt-aaccagatcctgagccttttgattattttaggttgacaAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2040893 206 + 4244037 tagcctttgtatggaaaacatt---------------------------gtaattctgttcggcacctctatttctgcctatataaatgatcttcact-----ttccccccgcactgggagtactgattgccgttcttcggtgttcgt-gtgtccccagaagacggctcttacgtgccatgcttgcaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagGC i manLeu1.NW_012106252v1 M 1150 C 0 s colAng1.NW_012122154v1 2069066 206 + 4569836 tagcctttgtatggaaaacatt---------------------------gtaattctgttcggcacctctatttctgcctgtatacatgatcttcact-----ttccccccacactgggagtactgattgccattcttcggtgttctt-gtgtccccagaagacggctttcatgtgccatgcttgcaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacagGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038231 234 - 159171411 tagcctttgtatggaaaacgttgtaatcctgttcagcatggaaaac---gtaattctgttcagcacctctatttttgcctctataaatgatcttcattcccccccacccccgcactgggagtgcagatt-ccattcttccgtgttcac-gtgtctccagcagaccgctctcacatgccatgcttgaaaaaactctttt-aacaggatcctgagccttttgattattttaggttgacaAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760609 233 + 3513951 tagcctttgtatggaaaacattgc--tcctgttcagcacagaaaacgttgtaattctgttcagtacctctatttttgcctatataaatgatcttcatt---ccccacctctgcattgggagtactgattgccactcttccgtgttcac-gtgtctccaggagaccactctcacatgctatgcttgaaaaaactctttt-aaccagatcctgagccttttgattattttaggttgacaAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810090 208 + 1920343 tagcctttgtacggaaaccgtt---------------------------gtaatcctgttcagcacctctatttttgcctatatcaatgatcttcatt---ccccacccctgcactgggagtactgattgccattcttccgtgttcac-gtgtctccagcagaccgctcccacgtgctatgcttgaaaaaactctttt-aaccggatcctgagccttttgattgttttaggttgacaTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921074 237 - 7032639 tagcctttgtatggaaaacgttgtaatcctgttcagcacggaaaacgttgtaattctgttcagcacctctatttttgcctatataaatgatcttcgttcccccgcttccctgcactgggagtactgattgccattcttccgtgttcac-gtgtctgcagcagaccgctctcacatgccatgcttg-aaaaactctttt-aactggatcctgagccttttgattattttaggttgacaAGC i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22019517 314 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35846828 228 - 65901067 I e dasNov3.JH570468 320140 8 - 852752 I e canFam3.chr9 21347873 0 + 61074082 C e otoGar3.GL873537 22730787 8 + 28711273 I a score=48677.000000 s hg38.chr17_GL383564v2_alt 16564 5 + 133151 ACTGG s panTro5.chr17 16210441 5 + 83181570 ACTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16117799 5 + 83442489 ACTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952893 5 + 4267968 ACCGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931235 5 - 2193130 ACTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005605 5 - 77216781 ACTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918205 5 - 80997621 ACTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974468 5 + 10377808 ACTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861577 5 - 8458610 ACTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817923 5 + 75148670 ACTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041099 5 + 4244037 ACTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069272 5 + 4569836 ACTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038465 5 - 159171411 TCTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760842 5 + 3513951 TCTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810298 5 + 1920343 TCTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921311 5 - 7032639 TCTGG i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22019831 5 - 122082543 ACCAG i mm10.chr11 I 314 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35846828 228 - 65901067 I e dasNov3.JH570468 320140 8 - 852752 I e canFam3.chr9 21347873 0 + 61074082 C e otoGar3.GL873537 22730787 8 + 28711273 I a score=276694.000000 s hg38.chr17_GL383564v2_alt 16569 30 + 133151 ATTAATTTTCTAAAATTTCTCCTTTGATTC s panTro5.chr17 16210446 30 + 83181570 ATTAATTTTCTAAAATTTCTCCTTTGATTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16117804 30 + 83442489 ATTAATTTTCTAAAATTTCTCCTTTGATTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952898 30 + 4267968 ATTAATTTTCTAAAATTTCTCCTTTGATTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931240 30 - 2193130 ATTAATTTTCTAAAATTTCTCCTTTGATTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005610 26 - 77216781 ATTAATCTTCTAAAATTTCTCCT----TTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918210 26 - 80997621 ATTAATCTTCTAAAATTTCTCCT----TTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974473 26 + 10377808 ATTAATCTTCTAAAATTTCTCCT----TTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861582 26 - 8458610 ATTAATCTTCTAAAATTTCTCCT----TTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817928 26 + 75148670 ATTAATCTTCTAAAATTTCTCCT----TTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041104 26 + 4244037 ATTAATCTTCTAAAATTTCTCCT----TTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069277 30 + 4569836 ATTAATTTTCTAAAATTTCTCCTTTGATTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038470 30 - 159171411 ATTAACTTTCTAAAATTTCTCCTTTGATTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760847 30 + 3513951 ATTAACTTTCTAAGATTTCTCCTTTGATTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810303 30 + 1920343 ATTAACTTTCTAAAATTTCTCCTTTGATTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921316 30 - 7032639 ATTAACTTTCTAAAATTTCTCCTTTGATTC i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22019836 29 - 122082543 ATGAGTTGTCCCA-ACTGCTCCTTTGATGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21347873 30 + 61074082 ACTACTTTTCCTAAACTGCTGCTTTGGTCA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35846828 228 - 65901067 I e dasNov3.JH570468 320140 8 - 852752 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=558874.000000 s hg38.chr17_GL383564v2_alt 16599 43 + 133151 TCTCTTTCATCTGCTCAAAAACCTCCAGAGGACTctgttctgt s panTro5.chr17 16210476 43 + 83181570 TCTCTTTCATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16117834 43 + 83442489 TCTCTTTCATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952928 43 + 4267968 TCTCTTTCATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931270 43 - 2193130 TGTCTTCTGTCTGCTCAAAAACCTCCAGAGGACTctgttctgt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005636 43 - 77216781 TCTCTTTCATCTGCTCGAAAACCTCCAGAGGACTCTGTTCTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918236 43 - 80997621 TCTCTTTCATCTGCTCGAAAACCTCCAGAGGACTCTGTTCTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974499 43 + 10377808 TCTCTTTCATCTGCTCGAAAACCTCCAGAGGACTCTGTTCTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861608 43 - 8458610 TCTCTTTCATCTGCTCGAAAACCTCCAGAGGACTCTGTTCTGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817954 42 + 75148670 TCTCTTTCATCTGCT-GGAAACCTCCGGAGGACTCTGTTCTGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041130 43 + 4244037 TCTCTTTCATCTGCTCGAAAACCTCCAGAGGACTCTATTCTGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069307 43 + 4569836 TCTCTTTCATCTGCTCGAAAACCTCCGGAGGACTCTGTTCTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038500 41 - 159171411 TCTCT--CATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760877 41 + 3513951 TCTCT--CATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810333 41 + 1920343 TCTCT--CATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921346 41 - 7032639 TCTCT--TATCTGCTCAAAAACCTCCAGAGGACTctgttctgt i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35847056 43 - 65901067 TCTCTCTCATCTGCTCAAAAACCTCCAGACGACTCTGATCTGT i micMur3.chr16 I 228 I 624 s mm10.chr11 22019865 41 - 122082543 TCTCTCTCATCTGCTCAAATATCTCTTAGGGACTCTATTCT-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21347903 42 + 61074082 TCTCTCTTGTCTGCTC-AGAACCTCCAGAGGACTCTATTCTGT i canFam3.chr9 C 0 I 12 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e dasNov3.JH570468 320140 8 - 852752 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=145805.000000 s hg38.chr17_GL383564v2_alt 16642 17 + 133151 ttctagc-tcttcaggca s panTro5.chr17 16210519 17 + 83181570 ttctagc-tcttcaggca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16117877 17 + 83442489 ttctagc-tcttcaggca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952971 17 + 4267968 ttctagc-tcttcaggca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931313 17 - 2193130 ttctagc-tcttcaggca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005679 17 - 77216781 CTCTAGC-TCTTTAGGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918279 17 - 80997621 CTCTAGC-TCTTTAGGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974542 17 + 10377808 CTCTAGC-TCTTTAGGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861651 17 - 8458610 CTCTAGC-TCTTTAGGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64817996 17 + 75148670 CTCTAGC-TCTTTAGGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041173 17 + 4244037 CTCTAGC-TCTTTAGGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069350 17 + 4569836 CTCTAGC-TCTTTCGGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038541 17 - 159171411 ttctagc-tttttaggtg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760918 17 + 3513951 ttctagc-tatttaggcg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810374 17 + 1920343 ttctagc-tatttaggcg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921387 18 - 7032639 ttctagcttatttaggcg i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22019906 5 - 122082543 -------------AGCCG i mm10.chr11 C 0 C 0 s canFam3.chr9 21347957 17 + 61074082 TTCCAGT-TCTTTGAACG i canFam3.chr9 I 12 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e dasNov3.JH570468 320140 8 - 852752 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=3086718.000000 s hg38.chr17_GL383564v2_alt 16659 288 + 133151 agttgtgtggcccagagcaggaacttcatagctatttgttgaataaatCCAG---------TTG-GACA------GCTGGCGTCTAGGAGTGTTGGCCTTGTGTTCAGTCCAGAGTCCACTATCTGGCCCTTTCTGGGTCACTGGGCAGagcagaaagaacttgggcttcagggtcaggcagacctgggctgacatttcaaggcccatacttttcattccaacttg-gtga-gttcagacaa-catccctaactgctctgagctttgttttctttactctac----ag------------------------------tgggatacttgtaactgctttgt s panTro5.chr17 16210536 288 + 83181570 agttgtgtggctcagagcaggaacttcatagctatttgttgaataaatCCAG---------TTG-GACA------GCTGGCGTCTAGGAGTGTTGGCCTTGTGTTCAGTCTAGACTCCACTATCTGGCCCTTTCTGGGTCACTGGGCAGagcagaaagaacttgggcttcagggtcaggcagacctgggctgacatttcaaggcctatacttttcattccaacttg-gtga-gttcagacaa-catccctaactgctctgagctttgttttctttactctac----ag------------------------------tgggatacttgtaactgctttgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16117894 288 + 83442489 agttgtgtggctcagagcaggaacttcatagctatttgttgaataaatCCAG---------TTG-GACA------GCTGGCGTCTAGGAGTGTTGGCCTTGTGTTCAGTCTAGACTCCACTATCTGGCCCTTTCTGGGTCACTGGGCAGagcagaaagaacttgggcttcagggtcaggcagacctgggctgacatttcaaggcctatacttttcattccaacttg-gtga-gttcagacaa-catccctaactgctctgagctttgttttctttactctac----ag------------------------------tgggatacttgtaactgctttgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3952988 288 + 4267968 agttgtgtggcccagagcaggaacttcatagctatttgttgaataaatCCAG---------TTG-GACA------GCTGGCGTCTAGGAGTGTTGGCCTTGTGTTCAGTCCAGACTCCACTATCTGGCCCTTTCTGGGTCACTGGGCAGagcagaaagaacttgggcttcagggtcaggcagacctgggctgacatttcaaggcccacacttttcattccaacttg-gtga-gttcagacaa-catccctaactgctctgagctttgttttctttactctac----ag------------------------------tgggatacttgtaactgctttgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931330 287 - 2193130 agttgtgtgacccagagcaggaacttcacagctatttgttgaataaatCCAG---------TTG-GACG------GCTGGCATCTAGGAGTGTTGGCCTGATGTTCAGTCCAGACTCCACTATCTGGCCCTTTCTGGGTCACTGGGCAGagcagaaagaacttgggcttcagggtcaggcagacctgggctgacatttcaaggcccatac-tttcattccaacgtg-gtga-gttcggacaa-catccctaactgctctgagctttgttttctttactctac----ag------------------------------tgggatacttgtaactgctttgt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005696 287 - 77216781 AGTTGTGTGGTTCAGAGCGGGAATCTCATAGCTATTTGTTGAATAAATCCAG---------CTG-GACA------GTTGGCGTCTAGGAGTGCTGGCCTGTGGTTCAGTCCAGACTCCACTATCTGCCCCTTTCTGGGTCACTGGgcagagcagaaagcacttggacttcaggctcaggcagacctgggctgacatttcaaggcccatac-tttcattccaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgctttgt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918296 287 - 80997621 AGTTGTGTGGTTCAGAGCGGGAATCTCATAGCTATTTGTTGAATAAATCCAG---------CTG-GACA------GTTGGCGTCTAGGAGTGCTGGCCTGTGGTTCAGTCCAGACTCCACTATCTGCCCCTTTCTGGGTCACTGGgcagagcagaaagcacttggacttcaggctcaggcagacctgggctgacatttcaaggcccatac-tttcattccaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgctttgt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974559 287 + 10377808 AGTTGTGTGGTTCAGAGCGGGAATCTCATAGCTATTTGTTGAATAAATCCAG---------CTG-GACA------GTTGGCGTCTAGGAGTGCTGGCCTGTGGTTCAGTCCAGACTCCACTATCTGCCCCTTTCTGGGTCACTGGgcagagcagaaagcacttggacttcaggctcaggcagacctgggctgacatttcaaggcccatac-tttcattccaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgctttgt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861668 287 - 8458610 AGTTGTGTGGTTCAGAGCGGGAACCTCATAGCTATTTGTTGAATAAATCCAG---------CTG-GACA------GTTGGCGTCTAGGAGTGCTGGCCTGCGGTTCAGTCCAGACTCCACTATCTGCCCCTTTCTGGGTCACTGGgcagagcagaaagcacttggacttcaggctcaggcagacctgggctgacatttcaaggcccatac-tttcatttcaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgttttgt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818013 287 + 75148670 AGTTGTGTGGTCCAGAGCGGGAACCTCATGGCTATTTGTTGAATAAATACAG---------CTG-GACA------GCTGGCGTCTAGGAGTGTTGGCCTGCGGTTCAGTCCAGTCTCCACTATCTGCCCCTTTCTGGGTCACTGGgcagagcagaaagcacttggacttcaggctcaggcagacctggcctgacatttcaaggcccatac-tttcattccaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgctttgt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041190 287 + 4244037 AGTTGTGTGGTTCAGAGCGGGAACCTCATAGCTATTTGTTGAATAAATCCAG---------CTG-GACA------GTTGGCATCTAGGAGTGCTGGCCTGCGGTTCAGTCCAGACTCCACTATCTGCCCCTTTCTGGGTCACTGGgcagagcagaaagcacttggacttcaggctcaggcagacctgggctgacatttcaaagcccatac-tttcattccaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgctttgt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069367 287 + 4569836 AGTTGTGTGGTCCAGAGCGGGAACCTCATAGCTATTTGTTGAATAAATCCAG---------CTG-GACA------GCTGGTGTCTAGGAGTGTTGGCCTGGGCTTCAGTCCAGACTCCACTCTCTGCCCCTTTCTGCGTCACTGGGCAGagcagaaagaacttggacttcagggtcaggcagacctgggctgacatttcaaggcccatac-tttcattctaacttt-gtga-gctctgataa-cttccctaactgctctgagctttgttttcttcactctac----ag------------------------------tgggatacttgtaactgctttgt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038558 286 - 159171411 ag-tgtgtggcccagagcaggaacttcatacgtatttgttgaataaatCCAG---------CTG-GACA------GCTGGTGGCTAAGAGTCTCGGCCTGGTGCTTGGTCCAGACTCCACTACCTGGCCCTTTCTAGGTCACCCAGCAGagcagaaagaacgtgggcttcagggtcaggcagaccggggctgacagttcaaggcccatac-ttccattccaacttt-gcga-gctcagacca-cttccctaactgctctgagctttgttttctttcctctac----ag------------------------------tgggatacttgtaactgctttat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1760935 286 + 3513951 ag-tgtgtggcacagagcaggaacttcacatgtatttgttgaataaatCCAG---------TTG-GACA------GCTGATGGCTAAGAGTCTTGGCCTGGTGCTTGGTCCAGACTCCATCACCTGGCCCTTTCTGGGTCACCCAGCAGagcagaaagaacttgggcttcaggatcaggcagacctgggctgacatttcaaggcccatac-ttccattccaacttt-gcga-gctcagacca-cttccttaactgctctgagctttgtcttctttactctac----ag------------------------------tgggatacttgtaactgcttcgt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810391 285 + 1920343 ag-tgtgtggcccagagcaagagcttcatacatatttgttgaataaatCCAG---------TTG-GATA------GCTGGTGGCTAAGAGTCTTGGCCTGGTGCTTGGTCCAGACTCCATCCTCTGGCCCTTTCTGGGTCACCCAGCAGagcagaaagaacttgggcttcagggtcaggcagacctgggctgacgtgtcaaggcccatac-ttccattccaatttt--cga-gctcagacca-cttccctaactgctctgagctttgtcttctttactctac----ag------------------------------tgggatatttgtaactgctttgt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921405 286 - 7032639 ag-tgtgtggcccagagcaggaacttcatatgtatttgttgaataaatCCAG---------TTG-GACA------GCTGGTGGCTAAGAGTCTTGGCCTGGTGCTCGGTCCAGACTCCATTACCTGGCCCTTTCTGGGTCACCCAGCAGagcagaaagaacttgggcttcacggtcaggcagacctgggctgacatttcaaggcccatac-ttccattccaacttt-gcga-gctcagacca-ctcccctaactgctctgagctttgttttctttactcgac----ag------------------------------tgggatagttgtaactgctttgt i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22019911 297 - 122082543 TGTTGTGTGGTGC------------------CTATTTGCTGAATTAATTGAGTGTCTGGATCTG-GATG------GGGGATACCTTG----CTTGGCATGGTGTTTAGTCCAGACTCTGCTCTCTGGTTCCTTCAGGTTGTCtaggt-gatcaaaaagaggttgggcttgagagcaaggcagacctgggctggcatttcagtgtctgtcc----ctttctggctct-ggga-gctcaggcaa-gttactcaactactcttagATTT---TTCTGTAATCAAT----AAatgatgatgatcatgatgatgatgataatCTTGAatgtgtatgaatgctttgc i mm10.chr11 C 0 I 224 s canFam3.chr9 21347974 228 + 61074082 AA-TGTGCAGCCCAGAG-AAAAACATGGCACCAGTTGGTTGAATGAAGTGCG---------TGGAGGGA------ATGGGTGTCTGTGGCTGCTG---------------------------------------------ACTAGGAACCTCag------cttgggcttgaaggtctggccaacctgagctaatgtttc-----tcagac-ttccttttctacttttgtga-gcttgtctgagctaacctaactgctctgagctt----tttcttattctac----aa------------------------------tgggatactggcaaccactttgc i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 320148 280 - 852752 aattgtgctggccagagcgggacctcagtacccatt-GTCGAGTGAATTGAA----------TG-GACATCTGTGGCTGGCATGGAAGGGCCCTGGCTTGGTGCGCAGTCTGGCCTCCACCATCTGGCCATTTCTgggctgcctggtagagaataaagaacttgagcttgagggtcaggcagacctgggctaaggcttcaaggactgcgc-t----ttccagcttt-gtggtgttcaggcaa-attcattaactg------------ttttccttattctgctgcagg------------------------------tggaagaccagtaactgctctgc i dasNov3.JH570468 I 8 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=304573.000000 s hg38.chr17_GL383564v2_alt 16947 26 + 133151 agtgtggttataaggatgaaaagaca s panTro5.chr17 16210824 26 + 83181570 agtgtggttataaggatgaaaagaca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118182 26 + 83442489 agtgtggttataaggatgaaaagaca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953276 26 + 4267968 agtgtggttataaggatgaaaagaca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931617 26 - 2193130 agtgtggttataaggatgaaaagaca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30005983 26 - 77216781 agtgtggttataaggatgaaaagaca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918583 26 - 80997621 agtgtggttataaggatgaaaagaca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974846 26 + 10377808 agtgtggttataaggatgaaaagaca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861955 26 - 8458610 agtgtggttataaggatgaaaagaca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818300 26 + 75148670 agtgtggttataaggatgaaaagaca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041477 26 + 4244037 agtgtggttataaggatgaaaagaca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069654 26 + 4569836 agtgtggttataaggatgaaaagaca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038844 26 - 159171411 agtgtggctataaggatgaaaagaca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761221 26 + 3513951 agtgtggttatcaggatgaaaagaca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810676 25 + 1920343 agtgtggttataaggatg-aaagaca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921691 26 - 7032639 agtgtggttataaggatgaaaagaca i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21348202 17 + 61074082 aatgtggttgaaaggat--------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 320428 26 - 852752 agggtagttcaaagggtaaaaggaaa i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22020208 224 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1163925.000000 s hg38.chr17_GL383564v2_alt 16973 124 + 133151 caactatatgggaagcatatggtataatacttggtggc--------------------aca---------tagtagg---tggtcaaataataacACAGTAGGCCGCACATAGTAGGTGTCTATCTAATTTGCGTGTATAGATT-----------------------------TGTGAA--TGTGTG-------------------------------- s panTro5.chr17 16210850 124 + 83181570 caactatatgggaagcatatggtataatacttggtggc--------------------aca---------tagtagg---tggtcaaataataacACAGTAGGCGGCACATAGTAGATGTCTATCTAATTTGCGTATATAGATT-----------------------------TGTGAA--TGTGTG-------------------------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118208 124 + 83442489 caactatatgggaagcatatggtataatacttggtggc--------------------aca---------tagtagg---tggtcaaatagtaacACAGTAGGCGGCACATAGTAGATGTCTATCTAATTTGCGTATATAGATT-----------------------------TGTGAA--TGTGTG-------------------------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953302 124 + 4267968 caactatatgggaagcatatggtataatacttggtggc--------------------aca---------tagtagg---tggtcaaataataacACAGTAGGCGGCACATAGTAGGTGTCTATCTAATTTGTGTATATAGATT-----------------------------TGTGAA--TGTGTG-------------------------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931643 124 - 2193130 caactatatgggaagcatatggtataatacttggtggc--------------------aca---------tagtagg---tggtcaaataataacatggtagGTGGCACATAGTAGGTGTCTATCTAATTTGGGTATATAGATT-----------------------------TGTGAG--TGTGTG-------------------------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006009 121 - 77216781 cgacgatatgggaagcacatagtataatatttggtggc--------------------aca---------tagtagg---tggtcaaa---taacatagtagGTGGCACATAGTAGGTGTCTATCTAATTTGGGCATATAGATT-----------------------------TGTGTG--TGTGTG-------------------------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918609 121 - 80997621 cgacgatatgggaagcacatagtataatatttggtggc--------------------aca---------tagtagg---tggtcaaa---taacatagtagGTGGCACATAGTAGGTGTCTATCTAATTTGGGCATATAGATT-----------------------------TGTGTG--TGTGTG-------------------------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974872 121 + 10377808 cgatgatatgggaagcacatagtataatatttggtggc--------------------aca---------tagtagg---tggtcaaa---taacatagtagGTGGCACATAGTAGGTGTCTATCTAATTTGGGCATATAGATT-----------------------------TGTGTG--TGTGTG-------------------------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1861981 141 - 8458610 cgacgatatgggaagcacatagtataatatttggtggcacatagtaggtggtcaaataaca---------tagtagG---TGGTCAAA---TAACATAGTAGGTGGCACATAGTAGGTGTCTATCTAATTTGGGCATATAGATT-----------------------------TGTGTG--TGTGTG-------------------------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818326 140 + 75148670 caacgatatgggaagcacatagtataatatttggtggcacatagtaagtggtcaaataaca---------cgatagG---TGGTCAAA---TAACATAGTAGGTGGCACATAGTAGGTGTCTATCTAATTTGGGCATATATATT-----------------------------TGTGTG--TGTGt--------------------------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041503 141 + 4244037 cgacgatatgggaagcacatagtataatatttggtggcacatagtaggtggtcaaataaca---------tagtagG---TGGTCAAA---TAACATAGTAGGTGGCACATAGTAGGTGTCTATCTAATTTGGGCATATAGATT-----------------------------TGTGTG--TGTGTG-------------------------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069680 121 + 4569836 tgataatatgggaagcacatagtataatatttggtggc--------------------aca---------tagtagg---tggtcaaa---taacatagtagGTGGCACATTGTAGGTGTCTATCTAATTTGGGCATATAGATT-----------------------------TATGTG--TGTGTG-------------------------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038870 126 - 159171411 tgactatatgggaagcacgtggtataatacttggtggc--------------------aca---------tagtagg---taatccaataaTAACATTGTAGGTGACACATAGTAGGTGTCTATCTAATTTGGGTATATAGATT-----------------------------TGTGTGCATGTGTG-------------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761247 126 + 3513951 tgactatatgggaagcacacggtataatatttggtggc--------------------aca---------tagtagg---taataaaataataacATTGTAGGTGGCACATAGTAAATGTCTATCTAATTTGGGTATATAGATT-----------------------------TGTGTGCATGTGTG-------------------------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810701 126 + 1920343 tgactacatgggaagcacatggtataatacttggtggc--------------------aca---------tagtaag---taatcaaataataacATTGTAGGTGGCACATAGTAGGTGTCTATCTAATTTGGGTATATAGATT-----------------------------TGTGTGCATGTGTG-------------------------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921717 126 - 7032639 tgactatatgggaagcacatggtataatacttggtggc--------------------aca---------tagtagg---taatcaaataataacATTGTAGGTGGCACATAGTAGTTGTCTATCTAATTTGGGTATATAGATT-----------------------------TGTGTGCATGTGTG-------------------------------- i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22020432 134 - 122082543 CATCAATACGG--ATTATATGGTAGCAAACTTGGTGGG--------------------ACT---------TTGGAAG---TAGTCAA----CATTTCTGTAG--------TAGTATATGTTAACC----TTGAGTGT-TAGGTtctctctctctctctctctctctctctGTGTGTGTG--TGTGTg-------------------------------- i mm10.chr11 I 224 C 0 s canFam3.chr9 21348219 93 + 61074082 ----------tgaagtatgtagtacaatactaggtagc--------------------ata---------tagtagg---tagtcaaA--------------------CGTGAT-GGTGTGTATCAACTCTGAATATATAGGTT-----------------------------tgtgtg--tgtgtg-------------------------------- i canFam3.chr9 C 0 I 36 s dasNov3.JH570468 320454 142 - 852752 cgac----tgccaagcatgtggtgcgatgctgggGGGT--------------------GCACACTCCTGCCAGCAGGGCTTGGTCTTA-------------------GAGTAGTGTGTGTTTGCT---TTTGAGTATCTAGGGT-----------------------------TGTGTG--TGTGTGTGTGTGTTAGAGTGAGAGAAAAAGAGAACGAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=593264.000000 s hg38.chr17_GL383564v2_alt 17097 61 + 133151 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagctcggttcccttcacataatag s panTro5.chr17 16210974 61 + 83181570 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagcttggttcccttcacataatag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118332 61 + 83442489 AGAGAGAATTA---------------------------AGTAAAATAttgtataccaagtgccaagcttggttcccttcacataatag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953426 61 + 4267968 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagctcggttcccttcacatgatag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931767 61 - 2193130 AGAgagaatta---------------------------agtaaaatattgtataccgagtgccaagcttcgttccctgcacataatag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006130 61 - 77216781 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagcttggttctctgcacataatag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918730 61 - 80997621 AGAGAGAATTA---------------------------AGTAAAAtattgtataccaagtgccaagcttggttctctgcacataatag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1974993 61 + 10377808 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagcttggttctctgcacataatag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862122 61 - 8458610 AGAgagaatta---------------------------agtaaaatgttgtataccaagtgccaagcttggttctctgcacataatag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818466 60 + 75148670 -gtgagaatta---------------------------agtaaaatattgtataccaagtgccaagcttggttctctgcacataatag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041644 61 + 4244037 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagcttggttctctgcacataatag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069801 61 + 4569836 AGAgagaatta---------------------------agtaaaatattgtataccaagtgccaagcttggttccctgcacataatag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46038996 57 - 159171411 AGAGAGAAT-------------------------------TAAAGTATTGTGTACCAAGTGCCCAACTTGATTCCCAGAACATAATAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761373 57 + 3513951 AGAGAGAAT-------------------------------TAAAGTATTGTGTACCAAGTGCCAAACCTGATTCCCAGCACGTAATTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810827 57 + 1920343 AGAGAGAAT-------------------------------TAAAGTATTGTGTACCAAGTGCCAAACTTGACTCCCAGCACATAACAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921843 57 - 7032639 AAAGAGAAT-------------------------------TAAAGtattgtgtaccaagtgccaaacttgattcccagcacataatag i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22020566 86 - 122082543 agagagagagagagagagagagagagagaACTATGATTAGTGAAATACTGTG--CTAAATTCCAGATCCGATTCCTAGAATGTAATAG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 320596 60 - 852752 AGAgagaatga---------------------------aatgaaatactatatattaaatgccaagccaga-tcccagcacccaatag i dasNov3.JH570468 C 0 I 1908 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=12376.000000 s hg38.chr17_GL383564v2_alt 17158 1 + 133151 a s panTro5.chr17 16211035 1 + 83181570 a i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118393 1 + 83442489 a i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953487 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931828 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006191 1 - 77216781 a i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918791 1 - 80997621 a i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975054 1 + 10377808 a i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862183 1 - 8458610 a i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818526 1 + 75148670 a i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041705 1 + 4244037 a i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069862 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039053 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761430 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810884 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921900 1 - 7032639 a i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22020652 1 - 122082543 A i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e dasNov3.JH570468 320656 1908 - 852752 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1111345.000000 s hg38.chr17_GL383564v2_alt 17159 104 + 133151 tgtcaata--------gatatt-acttcATGTGACCTTTATCTGTCCTTTATGAACATTGTTTTTCG-CGTGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTGCAT s panTro5.chr17 16211036 104 + 83181570 tgtcaata--------gatatt-acttcatgtgacttTTATCTGTCCTTTACGAACATTGTTTTTCG-CGTGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTGCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118394 104 + 83442489 tgtcaata--------gatatt-acttcatgtgacttTTATCTGTCCTTTACGAACATTGTTTTTCG-CGTGGACTGGCCCCTTCCCCACAGGCATAAGCAACACAGTGTGCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953488 104 + 4267968 tgtcaata--------gatatt-acttcATGTGACCTTTATCTGTCCTCTACGAACATTATTTTTCG-CGTGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTGCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931829 104 - 2193130 tgtcaata--------aatatt-acttcATGTGACCTTTATCTGTCCTTTACAGACATTGTTTTTCA-CGTGGACTGGCCTCTTCCCCGCAGACATAAGCAACACAGTGTGCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006192 104 - 77216781 tgtcaata--------aatatt-acttcATGTGACCTTTCTCTGTCTTCTGCAAACATTGTTTTTCA-CATGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918792 104 - 80997621 tgtcaata--------aatatt-ACTTCATGTGACCTTTCTCTGTCTTCTGCAAACATTGTTTTTCA-CATGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975055 104 + 10377808 tgtcaata--------aatatt-acttcATGTGACCTTTCTCTGTCCTCTGCAAACATTGTTTTTCA-CATGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862184 104 - 8458610 tgtcaata--------aatatt-acttcATGTGACCTTTCTCTGTCCTCTGCAAACATTGTTTTTCA-CATGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818527 104 + 75148670 tgttaata--------aatatt-acttcATGTGACCTTTCTCTGTCCTCTACAAACATTGTTTTTCA-CATGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041706 104 + 4244037 tgtcaata--------aatatt-acttcATGTGACCTTTCTCTGTCCTCTGCAAACATTGTTTTTCA-CATGGACTGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069863 104 + 4569836 tgtcaata--------aatatt-acttcATGTGACCTTTCTCTGTCCTCTACGAACATTGTTTTTCA-CACGGACCGGCCTCTTCCCCACAGGCATAAGCAACACAGTGTTCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039054 103 - 159171411 TGTCAATA--------AATATT-ACTTCGCGTGACCTTTATCTGTCCTCTACAAACATTGTTTTTCA-CACAGACTGGCCTCTTCTCCACAGGCATAAGCAACACAGTGTG-AT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761431 103 + 3513951 TGTCAATA--------AATACT-ACTTCGCGTGACCTTTATCTGTCCTCTACAAACATTGTTTTTCA-CACGGACCAGCCTCTTCTCCACAGGCGTAAGCAACACAGTGTG-AT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810885 103 + 1920343 TGTCAATA--------AATATT-ACTTCGTGTGACCTTTATTTGTCCTCTACAAACATTGTTTTTCA-CACGGACTGGCCTCTTCTCCACAGGCATAAGCAACACAGCGCG-AC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6921901 103 - 7032639 tgtcaata--------aatatt-ACTTCGCGTGACCTTTATCTGTCCTCTGCAAACATTGTTTTTCA-CATGGACCGGCCTCTTCTCCACAGGCGTAAGCAACACAGTGTG-AT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22020653 96 - 122082543 TGTTAATA---------ATATT-GCCTCCCTTCACCTTCTTCTGG--TCTATAAACATTGCTCTGTG-TTACACTTGGCCTCCTCCCC-CAGGCTTCACAAACATCATCT---- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 322564 110 - 852752 tgtcaATAGGCTCTTAAACATTAACTTCACTTGACCTTTCTCTGTCCTTC----ACATTGTTTTTTATTAATGACTGCCCTCTTAACCACAGGCTTAACAAACACAGTATGGAT i dasNov3.JH570468 I 1908 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847099 624 - 65901067 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1013666.000000 s hg38.chr17_GL383564v2_alt 17263 82 + 133151 ATTTTCCTTTTTGTCTCTCCTCTCTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCAGCAAAGAAGAGCAAACTAGGAA s panTro5.chr17 16211140 82 + 83181570 ATTTTCCTTTTTGTCTCTCCTCTGTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCAGCAAAGAAGAGCGAACTAGGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118498 82 + 83442489 ATTTTCCTTTTTGTCTCTCCTCTCTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCAGCAAAGAAGAGCGAACTAGGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953592 82 + 4267968 ATTTTCCTTTTTGTCTCTCCTCTCTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCAGCAAAGAAGAGCGAACTAGGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1931933 82 - 2193130 ATTTTCCTTCTTGTCTGTCCTCTCTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCAGCAAAGAAGAGTGAACTAGGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006296 82 - 77216781 ATTTTCCTTCTTGTCTCTcctctctccttc----atcctagatatcctcctaaaacaaacctccgcaaagaagggcgaactaggaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918896 82 - 80997621 ATTTTCCTTCTTGTCTCTCCTCTCTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCCGCAAAGAAGGGCGAACTAGGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975159 82 + 10377808 ATTTTCCTTCTTGTCTCTcctctctccttc----atcctagatatcctcctaaaacaaacctccgcaaagaagggcgaactaggaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862288 82 - 8458610 ATTTTCCTTCTTGTCTCTcctctctccttc----atcctagatatcctcctaaaacaaacctccgcaaagaagggcgaactaggaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818631 82 + 75148670 ATTTTCCTTCTTGTCTCTCCTCTCTCCTTC----ATCCTAGATATCCTCCTAAAACAAACCTCCGCAAAGAAGGGCGAACTAGGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041810 82 + 4244037 ATTTTCCTTCTTGTCTCTcctctctccttc----atcctagatatcctcctaaaacaaacctccgcaaagaagggcgaactaggaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2069967 82 + 4569836 ATTTTCCTTCTTGTCTCTTCTGtctccttc----ttcctagatatcctcctaaaacaaacctctgcaaagaagggcgaactaggaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039157 80 - 159171411 GTTTTCCTTCTT--CTCTCCTCACTCCTTC----ATCTTAGATATCCTCCTAAAGCAAACCTCAGCAAAGAAGAGCGAACGAGGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761534 82 + 3513951 GTTTTCCTTCTTGCCTCTCCTCCCTCCTTC----ATCTTAGATATCCTCCTAAAATAAATCTCAGCAAAGAAGAGCGAACGAGGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1810988 82 + 1920343 GTTTTCCTTCTTGTCTctcctccctccttc----atcttagatatcctcctacaacaaacctcagcaaagaagagcaaacgaggaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922004 82 - 7032639 GTTTTTCTTCTTGTCTctcctccctccttc----gtcttagatatcctcctaaaacaaacctcagcaaagaagagcgaatgaggaa i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35847723 83 - 65901067 ATTTTCCTTCTTGTCCCTCCTCTCTCCTTC---TAGCTTAGATGTTCTCCTAAAACAAACCCCAGTGAAGAAGAGTGAACTAGGAA i micMur3.chr16 I 624 I 456 s mm10.chr11 22020749 85 - 122082543 AGGCTTCTTCTGGTCCCTTCCTTATTCTTCTTCTATCTTAGAAGTTCTTATGAAAC-AGCCTTGGCCATGAAGAGTGAGCGAGGGA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 322674 79 - 852752 ---TTACCCCTATTCACTCCTCCCTTCTTC---CAACTTAGATGTTCTCATAAAGC-AATCTTAGTGAAAAAGAGTGAACTGGGAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=337621.000000 s hg38.chr17_GL383564v2_alt 17345 35 + 133151 AACAAACAGAACTTGCTTATTACATTGGAGAAAAC s panTro5.chr17 16211222 35 + 83181570 AACAAACAGAACTTGCTTATTACATTGGAGAAAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118580 35 + 83442489 AACAAACAGAACTTGCTTATTACATTGGAGAAAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953674 35 + 4267968 AACAAACAGAACTTGCTTATTACTTTGGAGAAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932015 35 - 2193130 AACAAACAGAACTTGCTTATTACGTTGGAGAAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006378 33 - 77216781 aacaaac--aacttgcttcttacgttggagaaaac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27918978 33 - 80997621 AACAAAC--AACTTGCTTCTTACGTTGGAGAAAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975241 33 + 10377808 aacaaac--aacttgcttcttatgttggagaaaac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862370 35 - 8458610 aacaaacagaacttgcttcttacgttggagaaaac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818713 35 + 75148670 AACAAACAGAACTTGCTTGTTACATTGGAGAAAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041892 35 + 4244037 aacaaacagaacttgcttcttatgttggagaaaac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070049 35 + 4569836 aacaaacagaacttgcttattacgttggagaaaac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039237 32 - 159171411 AACGAACAGAGCTTGCTTATTGTGTT---GAAAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761616 35 + 3513951 AACGAACAGAGTTTGCTTATTGTGTTGAAGAAAAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811070 35 + 1920343 aacgaacagagcttgcttattgtgttgaagaaaac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922086 32 - 7032639 aacgaacagagcttgcttattgtg---aagaaaac i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22020834 35 - 122082543 AATAAACAGACCTTGCTTATTTTCCTGAAGACAGC i mm10.chr11 C 0 I 126 s dasNov3.JH570468 322753 34 - 852752 AACAAACAGAATTTGCTTAACATAGCGAGGAAAA- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847806 456 - 65901067 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=531405.000000 s hg38.chr17_GL383564v2_alt 17380 51 + 133151 TGCATGCTAACTGATTTGAAGTACAGTAATCCAAACACTGGCTCCTCTTGA s panTro5.chr17 16211257 51 + 83181570 TGTATGCTAACTGATTTGAAGTACAGTAATCCAAACACTGGCTCCTCTTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118615 51 + 83442489 TGCATGCTAACTGATTTGAAGTACAGTAATCCAAACACTGGCTCCTCTTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953709 51 + 4267968 TGCATGCTAACTGATTTGAAGTACAGTAATCCAAACACTGGCTCCTCTTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932050 51 - 2193130 TGCATGCTAACTGATTTGAAGTACAGTTATCCAAGCACTGGCTCTTCTTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006411 51 - 77216781 tgcatgctaactgatttgaagtacagtaatccaaacacgggctcctcttga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919011 51 - 80997621 TGCATGCTAACTGATTTGAAGTACAGTAATCCAAACACGGGCTCCTCTTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975274 51 + 10377808 tgcatgctaactgatttgaagtacagtaatccaaacacgggctcctcttga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862405 51 - 8458610 tgcatgctaactgatttgaagtaccgtaatccaaacacgggctcctcttga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818748 51 + 75148670 TGCATGCTAACTGATTTGAAGTACAGTAATCCAAACACGGGCTCCTCTTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041927 51 + 4244037 tgcatgctaactgatttgaagtacagtaatccaaacacgggctcctcttga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070084 51 + 4569836 tgcatgctaactgatttgaagtacagtaatccaaacacgggctcctcttga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039269 51 - 159171411 TGCATGCTCAGCGATCTGAAGTGCAGTAATCCAAACACTTCCTCCTTTTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761651 51 + 3513951 TGCATACTAAGTGATTTGAAGTGCAGTAATCCAAACATTTCCTCCTCTTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811105 51 + 1920343 tgcacactaagtgatttgaagtgcagtaatccaaacacttccttctcttga i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922118 51 - 7032639 tgcatgctaagtgatttgaagtgcagtaatccaaacacttcttcctcttga i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 322787 51 - 852752 TGCACACTAACTGATTTTACATGAGGTCATTCAAACCTTTGCTTCTCTTAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22020869 126 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847806 456 - 65901067 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1085505.000000 s hg38.chr17_GL383564v2_alt 17431 99 + 133151 ATTCATCAAATCCTGTTTT--------------GTGACCTGGTGCTTCATTCACCTAGGATGA-AGTCACCACAAAACTTGTCTATTGCTATGGAGcagtgattccgtcttcca s panTro5.chr17 16211308 99 + 83181570 ATTCATCAAATCCTGTTTT--------------GTGACCTGGTGCTTCATTCACCTAGGATGA-AGTCACCACAAAACTTGTCTATTGCTATGGAGcagtgattccgtcttcca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118666 99 + 83442489 ATTCATCAAATCCTGTTTT--------------GTGACCTGGTGCTTCATTCACCTAGGATGA-AGTCACCACAAAACTTGTTTATTGCTGTGGAGcagtgattccgtcttcca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953760 99 + 4267968 ATTCATCAAATCCTGTTTT--------------GTGACCTGGTGCTTCATTCACCTAGGATGA-AGTCACCACAGAACTTGTCTATTGCTATGGAGcagtggttctgtcttcca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932101 99 - 2193130 ATTCATCAAATCCTGTTTT--------------GTGACCTTGTGTTTCATTTACCCAGGATGA-ATTCACCACAAAACTTGTCTATTTCTATGGAGcagtggttctgtcttcca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006462 99 - 77216781 attcatcaaatcctgtttt--------------gtgacccggtgcttcatttacctaggatga-agtcaccacaaagcttgtctattgctatggagcggtggttccgtcttcca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919062 99 - 80997621 ATTCATCAAATCCTGTTTT--------------GTGACCCGGTGCTTCATTTACCTAGGATGA-AGTCACCACAAAGCTTGTCTATTGCTATGGAGcggtggttccgtcttcca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975325 99 + 10377808 attcatcaaatcctgtttt--------------gtgacccggtgcttcatttacctaggatga-agtcaccacaaagcttgtctattgctatggagcggtggttccgtcttcca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862456 99 - 8458610 attcatcaaatcctgtttt--------------gtgacccggtgcttcatttacctaggatga-agtcaccacaaagcttgtctattgctatggagcagtggttccgtcttcca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818799 99 + 75148670 ATTCATCAAATCCTGTTTT--------------GTGACCTGGTGCTTCATTTACCTAGGATAA-AGTCACCACAAAGGTTGTCTATTGCTATGGAGcggtggttccgtcttcca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2041978 99 + 4244037 attcatcaaatcctgtttt--------------gtgacccggtgcttcatttacctaggatga-agtcaccacaaagcttgtctattgctatggagcggtggttccgtcttcca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070135 99 + 4569836 attcatcaaattctgtttt--------------gtgacctggtacttcgtttacctaggatga-agtcaccacaaagcttgtctattgctatggagcggtggttccgtcttcca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039320 99 - 159171411 GTTCATCAAATACTGCTTT--------------GTGACCTGGTGCTTCATTTACATGGGATGC-AGTCACCACAAAGCTTGTCTCTTGCTATGGAGcagtggttccatcttcca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761702 99 + 3513951 GTTCATCAAATACTGTTTT--------------GTGACCTGGTGCTTCGTTTACATAGGATGA-AGTCACAACAAAGCTTGTCTCTTGCTATGGAGcagtggttccgtcttcca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811156 99 + 1920343 gttcatcaaatactgtttt--------------gtgacctggtgcttcatatacataggatga-agtcaccacaaaacttgtcttttgctatggagcagtggttccgtcttcca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922169 99 - 7032639 gttcatcaaatactgtttt--------------gtgacctggtgcttcatttacataggatga-agtcaccacaaagcttgtctcttgctatggagcagtggttccgtcttcca i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22020995 102 - 122082543 ACTCATTGGCTCTTGGTCT------------CATCTATCTGGGCTTTCATTTACAGAGGATAATCGTCACCACAGAACAGGCCTCTGGCCACAGACAGGTGCTCATgtcctctt i mm10.chr11 I 126 C 0 s dasNov3.JH570468 322838 110 - 852752 ATTTATAAAATTCTGttttttttttttttttttttAATGTTGTCCTTCATTTACCTGAGAGGA-AGGTCCTGCAAAGC---TCTTCTGCTGCAGAGCCGTGGTTCTCttctcaa i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847806 456 - 65901067 I e canFam3.chr9 21348312 36 + 61074082 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1688069.000000 s hg38.chr17_GL383564v2_alt 17530 166 + 133151 agggtggtccccagaccagcagcatcagtgtcatgtgggaacttgttagaaatgcagactccctg-gcctgaccccagaccgcttgaatcagaaactgtggtgtggggcctgaaaacctgcatttttt--gcaagccctctgggtgattctgatgctggttaaagtttg s panTro5.chr17 16211407 168 + 83181570 agggtggtccccagaccagcagcatcagtgtcatgtgggaacttgttagaaatgcagactccctg-gcctgaccccagactgcttgaatcagaaactgtggtgtggggcctgaaaacctgcattttttttgcaagccctctgggtgattctgatgctggttaaagtttg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118765 167 + 83442489 agggtggtccccagaccagcagcatcagtgtcatgtgggaacttgttagaaatgcagactccctg-gcctgaccccagactgcttgaatcagaaactgtggtgtggggcctgaaaacctgcatttttt-tgcaagccctctgggtgattctgatgctggttaaagtttg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3953859 166 + 4267968 agggtggtcctcagaccagcagcatcagtgtcatgtgggaacttgttagaaatgcagactccctg-gcctgaccccaggccgcttgaatcagaaactgtggtgtggggcctgaaaacctgcatttttt--gcaagccctctgggtgattctgatgctggttaaagtttg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932200 166 - 2193130 agggtggtccccagaccagcagcatcagtgtcacgtgggaacttgttagaaatgcagactccctg-gcctgaccccagaccgcttgaatcagaaactgtggcgtggggccagaaaatctgcatttttt--gcaagccttctgggtgactctgatgctggttaaagtttg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006561 159 - 77216781 agggtggtccccagacgagcagcatcagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggagtggggcctggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919161 159 - 80997621 agggtggtccccagacgagcagcatcagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggagtggggcctggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975424 159 + 10377808 agggtggtccccagacgagcagcatcagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggagtggggcctggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862555 159 - 8458610 agggtggtccccagacgagcagcatcagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggcgtggggcctggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64818898 159 + 75148670 agggtggtccccagacgagcagcatcagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggggtggggcctggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042077 159 + 4244037 agggtggtccccagacgagcagcatcagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggcgtggggcgtggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070234 159 + 4569836 agggtggtccccagaccagcagcatgagtgtcacatgggaacttgttagaaatgcagactccccg-gcctgaccccaggccacttgaatcagaaactatggcatggggcctggaaatctgcattttt---gcaagccctctggg------ggttgctggttaaagtttg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039419 165 - 159171411 agggtggtccccagaccagcagcatcagtgtcgtgtgggtacttgttagaaatgcagactccctg-gcctgaccgcaggtggcctatgttagaaactgtggcgcagggcctggaaatctgcatttct---gcaagtccactgagtgattctgaggctggttgaagtttg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761801 165 + 3513951 agggtggtccccagaccagcagcatcagcgtcacgtgggtacttgttagaaatgcagactgcctg-gcctgaccccaggtggcctacattagaaaccatggtgtggggcctggaaatctgcatttct---gcaactccactgagtgattctgaggctggttgaagtttg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811255 165 + 1920343 agggtggtccccagaccagcagcatcagcgtcacgtgggtacttgttagaaatgcagactccctg-gcctgaccccaggtggcttacatgagaaactgtggcacggtgcctggaaatctgcatttct---gcaagtccactgagtgattctgaggcttgttgaagtttg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922268 165 - 7032639 agggtggtccccagaccagcagcatcagcttcatgtgggtacttgttagaaatgcagactccctg-gcctgaccccaggtggcctacattagaaactgtggcacggggcctggaaatctgcatttct---gcaagtgcactgagtgattctgaggctggctgaagtttg i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22021097 127 - 122082543 actgtggtcctgtatcctgctgtatcagcatca---ggggcctcgctgg------agactctcag-gcctgacccaaatgtact---gtgtgagactccag--------CTGTCAATTTGCACGACT---GTAAGTCCT---GGCTGTCCTGAC--------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21348348 164 + 61074082 agtgtgcttcccagtccc-cagactcagtatcacctgagaacttgatagaaatgcagactcttgg-gcctgaccacaagcctactgagtcagaaactctggcacagggcctggcaatcagccttttt---gcaagccctccaggtgattctgatgcagcctgaggtttg i canFam3.chr9 I 36 C 0 s dasNov3.JH570468 322948 156 - 852752 agggtgg--ccagggccagcagca-cagccttagcctccggcagattagaaatgcagattctcaacgctcaaccccagagctcttgaatcagaaactctggggtggggtcga-------gtgtttttt--gcaagtcctccaggttcttttga-gcaggacaaaatttg i dasNov3.JH570468 C 0 I 3 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35847806 456 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1781247.000000 s hg38.chr17_GL383564v2_alt 17696 146 + 133151 ac---cactgGTGGAGATGTTATGAAAATAGAAGCAGACAATA-TTTTTAGCATAGAGGAGTACA------AACTTCACTCTTACAGGCTTCAGA-AATGCAATT-TGGCTCTTTGGGTTGACATTTT-GTGTCATTCAAACTCATTTCTTT--GGGGGTC s panTro5.chr17 16211575 149 + 83181570 acaaccactgGTGGAGATGTTATGAAAATAGAAGCAGACAATA-TTTTTAGCATAGAGGAGTACA------AACTTCACTCTTACAGGCTTTAGA-AATGCAATT-TGGCTCTTTGGGTTGACATTTT-GTGTCATTCAAACTCATTTCTTT--GGGGGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16118932 149 + 83442489 acaaccactgGTGGAGATGTTATGAAAATAGAAGCAGACAATA-TTTTTAGCATACAGGAGTACA------AACTTCACTCTTACAGGCTTTAGA-AATGCAATT-TGGCTCTTTGGGTTGACATTTT-GTGTCATTCAAACTCATTTCTTT--GGGGGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954025 144 + 4267968 acaaccactgGTGGAGATGTTATGAAAATAGAAGCAGACAATA-TTTTTAGCATAGAGGAGTACA------A-----ACTCTTACAGGCTTTAGA-AATGCAATT-TGGCTTTTTGGGTTGACATTTT-GTGTCATTCAAACTCATTTCTTT--GGGGGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932366 148 - 2193130 acaaccgctgGAGGAGATGTTATGAAAATAGAAGCAGACAATA-TTTTTAGCATAGAGGAGTACA------AACTTCAGTCTTAC-GGCTTTAGA-AATGCAATT-TGGCTCTTTGGGTTGATGTTTT-GTGTCACTCAAACTCATTTCTTT--GGGGGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006720 149 - 77216781 acaaccgctggtggagatgttacgaaaatagaagcagacaata-tttttagcatagaggtgtaca------aacttcagtcttacaggttttaga-aatgcaatt-tggctctttgggttgacgtttt-gtgtcattcaaactcatttcttt--ggggATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919320 149 - 80997621 acaaccgctgGTGGAGATGTTACGAAAATAGAAGCAGACAATA-TTTTTAGCATAGAGGTGTACA------AACTTCAGTCTTACAGGTTTTAGA-AATGCAATT-TGGCTCTTTGGGTTGACGTTTT-GTGTCATTCAAACTCATTTCTTT--GGGGATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975583 149 + 10377808 acaaccgctggtggagatgttacgaaaatagaagcagacaata-tttttagcatagaggtgtaca------aacttcagtcttacaggttttaga-aatgcaatt-tggctctttgggttgacgtttt-gtgtcattcaaACTCATTTCTTT--GGGGATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862714 149 - 8458610 acaaccgctggtggagatgttacgaaaatagaagcagacaata-tttttagcatagaggtgtaca------aacttcagtcttacaggttttaga-aatgcaatt-tggctctttgggttgatgtttt-gtgtcattcaaactcatttcttt--ggggATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819057 149 + 75148670 acaaccgctgGTGGAGATGTTACGAAAATAGAAGCAGACAATA-TTTTTAGCATAGAGGTGTACA------AACTTCAGTCTTACAGGTTTTAGA-AATGCAATT-TGGCTCTTTGGGTTGATGTTTT-GTGTCATTCAAACTCATTTCTTT--GGGGATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042236 149 + 4244037 acaaccgctggtggagatgttatgaaaatagaagcagacaata-tttttagcatagaggtgtaca------aacttcagtcttacaggttttaga-aatgcaatt-tggctctttgggttgacgtttt-gtgtcattcaaactcatttcttt--ggggATC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070393 149 + 4569836 acaaccgctggtgaagatgttacaaaaatcgaagcagataata-tttttagtatagaggtgtaca------aacttcagtcttacaggttttaga-aatgcaatg-tggctctttgggttgacgtttt-gtgtcattcaaactcatttcttt--ggggATC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039584 149 - 159171411 acaactgctAGTGGAGATGTTATGAAGATAGAAGCAGACAATG-TTTTTAGCATAGAGGAGTTCA------AAGGTCAGTTTTATAGGCTTTGGA-AATGCAATT-TGGGTCTTTGGGTTGATGTTTTCGTGCCATTCAAACTCA-TTTTTT--GGGGGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1761966 150 + 3513951 acaaccgctAGTGGAGATGTTATGAAGATAGAAGCAGACAACG-TTTTTAGCATAGAGGAGTTCA------AAGGTCAGTGTTATAGGCTTTGGA-AATGCAATT-TGGGTCTTTGGGTTGACGTTTTTGTGCCATTCAAACTCATTTTTTT--GGGGGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811420 150 + 1920343 acaaccactaatggagatgttatgaagatagaagcagacaacg-tttttagtatagaggagttca------aaggtcagttttataggctttgga-aatgcaatt-tgggtctttgggttgatgtttttgtgccattcaaACTCATTTTTTT--GGGGGTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922433 150 - 7032639 acaactgctagtggagatgttatgaagatagaagcagacaacg-tttttagcatagaGGAGTTCA------AAGGTCAGTTTTATAGGCTTTGGA-AATGCAGTT-TGGGTCTTTGGGTTGACGTTTTTGTGCCATTCGAACTCATTTTTTT--GGGGGTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35848262 148 - 65901067 ---accaccgATGGAGATGTTACAAAAATACAAGCAGACTACA-TTTTTAGCATAGATGTGCTTA------AACTTCAGTTTTATAGGCTTTAAA-AATGCTATTGTGGCTCTTTCAGTTGACATTTTGGTGTCATTTACACTCGTTTCTTT--GGGGGTC i micMur3.chr16 I 456 I 128 s mm10.chr11 22021224 134 - 122082543 --------------ATAGGCTCTGAGAACAGAAACAGCTTACA-TCCTTAGCACAGTGAAACACA------AAATTCCATTTTACTAGCCTTGAA-AACACTACT---GCTGTTCTTGTATATATTTTCATGTCACTCAAACTTGTTTCTTT--AGTGGTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21348512 144 + 61074082 agaatcacCTGCGTAGAAGTTATAAAAATATAAGGAGACCACATTTTTTAGCATAAATTAGCATA------AATTTCAGTTTTATAGGCTTTAAA-AATGTAATT-TGACTCTTGAGGTCTACATCTTTGTTTCATTCAAAGTTGTTTCTTT--------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 323107 156 - 852752 ---accaTACAGGTAGATGACAAGAAAATACAAGGAGACCATG-CTTTCAGCTGAAATTAGCATACATTTCAGGTTCAGCTTCACAGGCTTTAAACAATGCTATTATGGCTCTATAGATCTGTATTTTTGTGACATTCACATGTGTTTCTTTCAGGGGGC- i dasNov3.JH570468 I 3 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=847943.000000 s hg38.chr17_GL383564v2_alt 17842 114 + 133151 CAGTACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCTTGAGCCCAC---------TTCTGCTTCTGAGTGTTTTCTTGTGTTCATCC---TCTTTT--TTTTtt------------------t s panTro5.chr17 16211724 112 + 83181570 CAGTACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCTTGAGCCCAC---------TTCTGCTTCTGAGTGTTTTCTTGTGTTCATCC---TCTTTT--TTttt-------------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119081 112 + 83442489 CAGTACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCTTGAGCCCAC---------TTCTGCTTCTGAGTGTTTTCTTGTGTTCATCC---TCTTTT--TTttt-------------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954169 112 + 4267968 CAGTACTTGGGACAGGCCTTTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCTTGAGCCCAC---------TTCTGCTTCTGAGTGTTTTCTTGTGTTCATTC---TTTTTT--TTttt-------------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932514 111 - 2193130 CAGTACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCT-----------------------AGTTCTCTTGAGCCCAC---------TTCTGCTTCTGAGTGTTTTCTTGTGTTTATCT---TCTTTT--Tttt--------------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006869 111 - 77216781 CAGCACTTGGGACAGGCCGGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTATACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGCGTTTTCTTGTGTTTAT-C---TCTTTT--TTttt-------------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919469 111 - 80997621 CAGCACTTGGGACAGGCCGGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTATACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGCGTTTTCTTGTGTTTAT-C---TCTTTT--TTttt-------------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975732 111 + 10377808 CAGCACTTGGGACAGGCCGGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGCGTTTTCTTGTGTTTAT-C---TCTTTT--TTttt-------------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862863 112 - 8458610 CAGCACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGTGTTTTCTTGTGTTTATCC---TCTTTT--TTttt-------------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819206 114 + 75148670 CAGCACTTGGGACAGGCCTGTTGGGTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGTGTTTTCTTATGTTTATCC---TCTTTT--TTttt-------------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042385 112 + 4244037 CAGCACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAAGTTGTACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGTGTTTTCTTGTGTTTATCC---TCTTTT--TTttt-------------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070542 112 + 4569836 CAGCACTTGGGACAGGCCTGTT--GTTGGCTG-----TTGC--ATTTCTGAGGTTGTACCC-----------------------AGTTCTCCTGAGCCCAC---------TTCTGTTTCTGAGTGTTTTCTTGTGTTTATCC---TCTTTT--TTttt-------------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039733 164 - 159171411 CGGTACTTGGAACAGGTCTGCT--GCTGGCTGTGTATTTGT--ATTTCTAAAGTAGTACCCAGTACTACTATTTCAAAAGTAGTAGTACTCTTGAGCCCAT---------TTCTGCTTCTGAGTGTTTTCTTGTGttcttcctcttctttg-ttttttttgagaccgagtctcactct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762116 138 + 3513951 TGGTACTTGGAACAGGTCTGCT--GCTGGCTGTGTATTTGT--ATTTCTAAAGTAGTACCC-----------------------AGTACTCTTGAGCCCAT---------TTCTGCTTCTGAGTGTTTTCTTGTGttcttcctcttctttgtttttttttgagaccgagt----ctct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811570 140 + 1920343 CGGTACTTGGAACAGGTCTGCT--GCTGGCTGTGTATTTGT--ATTTCTAAAGTAGTACCC-----------------------AGTACTCTTGAGCCTGT---------TTCTGTTTCTGAGTGttttcttgtgttcttcctcttctttg--tttttttgagaccgagtctcactct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922583 137 - 7032639 CGGTACTTGGAACAGGTCTGCT--GCTGGCTGTGTATTTGT--ATTTCTAAAGTAGCACCC-----------------------AGTACTCTTGAGCCCAT---------TTCTGCTTCTGAGTGTTTTCCTGTGttcttcc---tctttg--tttttttgagaccgagcctcactct i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22021358 98 - 122082543 CAACAAATGGGGTAGTCCTATT--GC-----------TGGC--ATTCTT----TTGTtttt-----------------------gtttttttcaagacag-------------ggtttctctgtgtagccctggatatcctg---gaactc--acttt-------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21348656 93 + 61074082 ------------------------------TG-----AGGCAGATTCCTGAGGTTGCACCC---------------------CTGCTTCTCTGGAGCCCACCATATAGGGTTCTGTTTCTGAGTGTGTGCCTATACTTATTT---ATTTTT--T------------------------ i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 323263 28 - 852752 CACCATCAGGGATGGGACT-CT--GTTGGCT--------------------------------------------------------------------------------------------------------------------------------------------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35848410 128 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=1126007.000000 s hg38.chr17_GL383564v2_alt 17956 121 + 133151 gtcacccaggctggagcacagtggctcgatctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcaacctcccgagtatctgggactacaggcgtgtgccaccac s panTro5.chr17 16211836 121 + 83181570 gtcacccaggctggagcacagtggctcgatctcggctcactgcaacctccaccgcccaggttcaagcaattctcctgcctcaacctcccgagtatctgggactacaggcgtgtgccaccac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119193 121 + 83442489 gtcacccaggctggagcacagtggctcgatctcggctcactgcaacctccaccgcccaggttcaagcaattctcctgcctcaacctcccgagtatctgggactacaggcgtgtgccaccac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954281 119 + 4267968 gtcacccaggctggagcacagtggctcgatctcggctcactgcaacctccacc-tccaggttcaagcaattctcctgcctcaacct-ccgagtatctgggactacaggtgtgcgccaccac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932625 121 - 2193130 gtcacccagtctggagtgcaatggtgtgatctcagctcactgcgacctccacctcccggcttcaagcaattctcctgcctcaacctcccaagtatctgggactacaggcgtgtgccaccac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30006980 121 - 77216781 gtcacccagtctggagtgcagtggcgcgatctcggttcactccaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919580 121 - 80997621 gtcacccagtctggagtgcagtggcgcgatctcggttcactccaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975843 121 + 10377808 gtcacccagtctggagtgcagtggcgcgatctcagttcactccaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1862975 121 - 8458610 gtcacccaggctggagtgtagtggcgcgatctcggttcactccaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819320 121 + 75148670 gtcacccagtctggagtgcagtggcgcgatctcggttcactccaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042497 121 + 4244037 gtcacccaggctggagtgtagtggcgcgatctcggttcactccaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070654 120 + 4569836 gtcacccagaatggagtgcagtggcgcaatcttggttcactccaacctccgcctcccgggttcaagcaa-tctcctgcctcagcctcttgagtagctgggactacaggcgcatgccaccat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46039897 121 - 159171411 gtcacccaggctggagtgcagtggtgcaatctaggctccttgcaacctctgcctcccgggttcaagtgatcctcctgcttcagtctccagagtagctgggactacaggcgtctgccaccat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762254 121 + 3513951 gtcgtccaggctggagtgcagtggtgcaatctaggctccttgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctccagagtagctgggactacaggcgtgcgccaccat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811710 121 + 1920343 gttgcccaggctggagtgcagtggtgcaatctaggctccttgcaacctctgcctccctggttcaagtgattctcctgcctcagcctccagagtagctgggactacaggcatgcgccaccat i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922720 121 - 7032639 gtcgtccaggctggagtgcagtggtgcaatctaggctccttgcaacctccgcctcccgggttcaagcgattctcctgcctcagtctccagagtagctgggactacaggcgtgtgccaccat i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22021456 80 - 122082543 gtagaccaggctgg-------------------------------cctcgaactc---------agaaatccgcctgcctctgtctcccaagt-gctgggattaaaggcgtgtgccaccac i mm10.chr11 C 0 I 2017 s dasNov3.JH570468 323291 52 - 852752 ---------------GCACACTGG------------------CAACTTGCTTCCCTGAGGTGACAGccttgcttct-cctaaactc----------------------------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35848410 128 - 65901067 I e canFam3.chr9 21348749 0 + 61074082 C e otoGar3.GL873537 22730787 8 + 28711273 I a score=1396389.000000 s hg38.chr17_GL383564v2_alt 18077 153 + 133151 acccagcaaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatc-cttgatctcgtgatccgcttgcctcggcttcccaaagtgctaggattacaggcgcgagccactgcgcctggccTGTTCATCCTCTT s panTro5.chr17 16211957 153 + 83181570 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatagtctcgatc-cttgatctcgtgatccgcttgcctcggcttcccaaagtgctaggattacaggcgcgagccactgcgtctggccTGTTCATCCTCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119314 153 + 83442489 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatagtctcgatc-cttgatctcgtgatccgcttgcctcggcttcccaaagtgctaggattacaggcgcgagccactgcgcctggccTGTTCATCCTCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954400 152 + 4267968 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatc-cttgatctcgtgatccgcttgcctcggctt-ccaaagtgctgggattacaggcgcgagccactgcgcctggccTGTTCATCCTCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932746 154 - 2193130 acccagctaatttttgtatttttagcagagatggggtttcaccatgttggccaggatggtctcgatctcttgatctcgtgatccacttgcctcggcttcccaaagtgctagaattacaggcgtgagccactgcgcctggccTGTTCATCCTCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007101 154 - 77216781 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgcttgcctcagcttcccaaagtgctaggattacaggcatgagccaccttgcctggccTGTTCATCCTCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919701 154 - 80997621 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgcttgcctcagcttcccaaagtgctaggattacaggcatgagccaccttgcctggccTGTTCATCCTCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1975964 154 + 10377808 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgctcgcctcagcttcccaaagtgctaggattacaggcatgagccaccttgcctggccTGTTCATCCTCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863096 154 - 8458610 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgctcgcctcagcttcccaaagtgctaggattacaggcatgagccaccttgcctggccTGTTCATCCTCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819441 154 + 75148670 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgctcgcctcagcttcccaaagtgctaggattacaggcacgagccaccttgcctggccTGTTCATCCTCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042618 154 + 4244037 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgctcgcctcagcttcccaaagtgctaggattacaggcatgagccaccttgcctggccTGTTCATCCTCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070774 154 + 4569836 acccagctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcaatctcttgatctcatgatccgcttgccttggcttcccaaagtgctaggattacaggcatgagccaccttgcctggccTGTTCATCCTCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040018 144 - 159171411 gcccagctaatatttgtatttttagtagagac-aggctttaccatgttggccaggatggcctcgatctcttgaccttgtgatccgccctcctcagcctcccaaagtgctgggattacagatgtgagacaccgtgcc---------cATCCTTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762375 145 + 3513951 gcccagctaatttttgtatttttagtgaagacggggctttaccatgttggccaggatggtctcgatctcctgaccttgtgatctgcccgcctcagcctaccaaagtgctgggattacaggtgtgagacaccgcgcc---------cATCCTCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811831 144 + 1920343 gcccagctaatttttgtatttttagtagagacggggctttaccatgttggccaggatggtctcgatctcttgaccttgtgatctgctcccctcagcctcccaaagtgctgggattacaggcgtgagacaccgcg-c---------TATCCTCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922841 145 - 7032639 gcccagctaatatttgtatttttagtagagacggggatttaccgtgttggccaggatggtctcgatctcttgaccttgtgatctgcccgcctcagcctcccaaagtgctgggattacaggtgtgagacactgtgcc---------cATCCTCTT i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 323343 47 - 852752 accctgc---------------------------------------------------------atgttttgatttc---------------------------------------------tgagc--atttgcc---cctgctcatcttgtt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35848410 128 - 65901067 I e canFam3.chr9 21348749 0 + 61074082 C e otoGar3.GL873537 22730787 8 + 28711273 I a score=200240.000000 s hg38.chr17_GL383564v2_alt 18230 18 + 133151 TTTCTGGAAAACTGTCTC s panTro5.chr17 16212110 18 + 83181570 TTTCTGGAAAACTGTCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119467 18 + 83442489 TTTCTGGAAAACTGTCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954552 18 + 4267968 TTTCTGGAAAACTGTCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932900 18 - 2193130 TTCCTGTAAAACTGTCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007255 18 - 77216781 TTTCTGGAAAACTGTCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919855 18 - 80997621 TTTCTGGAAAACTGTCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976118 18 + 10377808 TTTCTGGAAAACTGTCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863250 18 - 8458610 TTTCTGGAAAACTGTCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819595 18 + 75148670 TTTCTGGAAAACTGTCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042772 18 + 4244037 TTTCTGGAAAACTGTCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070928 18 + 4569836 TTTCTGGAAAACTGTCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040162 18 - 159171411 TTTCTGGAAAACTGTCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762520 18 + 3513951 TTTCTGGAAAACTATCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811975 18 + 1920343 TTTCTGGAAAACTATCAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6922986 18 - 7032639 TTTCTGGAAAACTATCTC i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21348749 18 + 61074082 TTTCTAGAAAATCCTTTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 323390 10 - 852752 -tttaagaaaa------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35848410 128 - 65901067 I e otoGar3.GL873537 22730787 8 + 28711273 I a score=73485.000000 s hg38.chr17_GL383564v2_alt 18248 9 + 133151 CCATCTTTC s panTro5.chr17 16212128 9 + 83181570 CCATCTTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119485 9 + 83442489 CCATCTTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954570 9 + 4267968 CCGTCTTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932918 9 - 2193130 CCCTCTTTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007273 8 - 77216781 CCA-CTTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919873 8 - 80997621 CCA-CTTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976136 8 + 10377808 CCA-CTTTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863268 8 - 8458610 CCA-CTTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819613 8 + 75148670 CCA-CTTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042790 8 + 4244037 CCA-CTTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070946 8 + 4569836 CCC-CTTTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040180 9 - 159171411 CCCTCTTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762538 9 + 3513951 CCCTCTTTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1811993 9 + 1920343 CCCTCTTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923004 9 - 7032639 CCCTCTTTC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22730795 9 + 28711273 CCGTCTTTC i otoGar3.GL873537 I 8 C 0 s canFam3.chr9 21348767 8 + 61074082 -TCTCTTTC i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 323400 9 - 852752 ccctcttcc i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35848410 128 - 65901067 I a score=429901.000000 s hg38.chr17_GL383564v2_alt 18257 31 + 133151 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT s panTro5.chr17 16212137 31 + 83181570 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119494 31 + 83442489 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954579 31 + 4267968 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932927 31 - 2193130 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007281 31 - 77216781 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919881 31 - 80997621 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976144 31 + 10377808 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863276 31 - 8458610 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819621 31 + 75148670 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042798 31 + 4244037 CTGCCCATCCAAGTCTTCCGAATC-TT--AAGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070954 31 + 4569836 CTGCCCATCCAAGTCTTCCCAATC-CT--AAGTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040189 31 - 159171411 CTGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762547 31 + 3513951 CAGCCCATCCAAGTCTTCCCAATC-TT--AAGTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812002 31 + 1920343 CCACCCATCCAAGTCTTCCCAATC-TT--AAGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923013 31 - 7032639 CCACCCATCCAAGTCTTCCCAATC-TT--AAGTT i aotNan1.NW_018502359v1 C 0 I 274 s micMur3.chr16 35848538 31 - 65901067 CTGCCCATCCAAGTCTCCTCAATC-TC--AAGCT i micMur3.chr16 I 128 C 0 s otoGar3.GL873537 22730804 31 + 28711273 CTG-CTGCCCAAGTTTCTTCAATCTTC--AAGCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21348777 33 + 61074082 CTGCTTGTCCAAATCTTATATATC-TTTCAAGAT i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 323409 33 - 852752 ctacttagccaagtcttatctatc-tttgaagtt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I a score=76107.000000 s hg38.chr17_GL383564v2_alt 18288 5 + 133151 CCAGA s panTro5.chr17 16212168 5 + 83181570 CCAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119525 5 + 83442489 CCAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954610 5 + 4267968 CCAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932958 5 - 2193130 CCAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007312 5 - 77216781 CCAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919912 5 - 80997621 CCAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976175 5 + 10377808 CCAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863307 5 - 8458610 CCAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819652 5 + 75148670 CCAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042829 5 + 4244037 CCAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070985 5 + 4569836 CCAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040220 5 - 159171411 TCAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762578 5 + 3513951 TCAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812033 5 + 1920343 TCAGA i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35848569 5 - 65901067 CCAGA i micMur3.chr16 C 0 I 238 s otoGar3.GL873537 22730835 5 + 28711273 CCAGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21348810 5 + 61074082 CCAGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 323442 5 - 852752 ccaga i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e aotNan1.NW_018502359v1 6923044 274 - 7032639 I a score=2854820.000000 s hg38.chr17_GL383564v2_alt 18293 247 + 133151 CAAAGTGTCTTTGATGGCC---------CCTCTATATCTCTAAGCTCCAGTCACTTCTCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--CCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATCAGA-CATTCAGAGTAAGTCACCAGGATAA----------------GGCAAATCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA s panTro5.chr17 16212173 247 + 83181570 CAAAGTGTCTTTGATGGCC---------CCTCTATATCTCTGAGCCCCAGTCACTTCTCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCagcttttt--gagggtggaaatttctccttttcatctctgcat--cccccat--ccccttgagaagggctttggtataacaggagtt--ca-ggaatatCAGA-CATTTAGAGTAAGTCACCAGGACAA----------------GGCAAACCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119530 247 + 83442489 CAAAGTGTCTTTGATGGCC---------CCTCTATATCTCTAAGCCCCAGTCACTTCTCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCagcttttt--gagggtggaaatttctccttttcatctctgcat--cccccat--ccccttgagaagggctttggtataacaggagtt--ca-ggaatatCAGA-CATTTAGAGTAAGTCACCAGGACAA----------------GGCAAACCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954615 247 + 4267968 CAAAGTGTCTTTGATGGCC---------CCTCTATATCTCTAAGCCCCAGTCACTTCTTCCTCCACTGAGTTACATGAC----C----TCTTTTTCTGCTCTCagcttttt--gagggtggaaatttctccttttcatctctgcat--cccccat--ccccttgagaagggctttggtataacaggagtt--ca-ggaatatCAGA-CAATTAGAGTAAGTCACCAGGACAA----------------GGCAAACCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1932963 249 - 2193130 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTTTTCCTCCACAGAGTTACGTGAC----C----TCTTTTACTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--CCCCCAT--CCCCTTGAGAAGGGCTTTGGTATGACAGGAGTT--CA-GGAATATCAGA-CATTTAGAGTAAGTCATCAAGACAA----------------GGCAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTGTATATAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007317 247 - 77216781 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTACCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATCAGA-CACTTAGAGTAAGTCACCAGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27919917 247 - 80997621 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTACCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATCAGA-CACTTAGAGTAAGTCACCAGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976180 247 + 10377808 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTACCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATCAGA-CACTTAGAGTAAGTCACCAGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863312 247 - 8458610 CAAAGTCTTTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTACCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATCAGA-CACTTAGAGTAAGTCACCAGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819657 247 + 75148670 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTACCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAACTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATTAGA-CACTTAGAGTAAGTCACCAGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2042834 247 + 4244037 CAAAGTCTTTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTACCCCTCCACTGAGTTACATGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTTCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAGGAGTT--CA-GGAATATCAGA-CACTTAGAGTAAGTCACCAGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2070990 247 + 4569836 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCCAGTCACTTATCCCTCCACTGAGTTACGTGAC----C----TCTTTTTCTGCTCTCAGCTTTTT--GAGGGTGGAAATTTCTCCTTTTCATCTCTGCAT--TCCCCAT--CCCCTTGAGAAGGGCTTTGGTATAACAAGAGTT--CA-GGAATATCAGA-CACTTAGAGTAAGTCACCGGGACAA----------------GGTAAGCCAT-------------GCCTTGGAGAATATCACCCACATCTG--TATAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040225 244 - 159171411 CAAAGTCTCTTTGGTGGCC---------CCCCTCTCTCTCTAAGGCCTAGTCACCTCTCCCTCCA-TGAGTTACATGAC----C----TCTGTTTCTGCTGTCAGATTTTT--GAGTGTGGAAATTTCTCCTTTTCATCTCTGCGT---CCCCAT--CCCCTTGAGAAAGGCTTTGGTATAACATGAG-T--CA-GGAATATTAGA-TATTGGGAGTAAGTCACCAGGACAA----------------GGTAAACCCT-------------GCCTTGGAGAATATCACCCCTGTCTG--TATAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762583 247 + 3513951 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCTAGTCACCTCTCCATCTGCTGAGTTACGTAAC----C----TCTGTTTCTGCTCTCAGCTTTTT--GAGTGTGGAAAATTTTCCTTTTCATCTCTGCAT--CCCCCAT--CTCCTTGAGAAAGGCTTTGGTATAACACGAGTT--CA-GGAGTATTAGA-CATTGGGAGTAAGTCACCAGGACAA----------------GGTAAACCCT-------------GCCTTGGAGAATATCACCCGCATTGG--TATAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812038 247 + 1920343 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCTTAGTCACCTCTCCCTCCACTGAGTTACATGAC----C----TCTGTTTCTGCTCTCAGCTTTTT--GAGTGTGGAAATTTCTCCTTCTCATCTCTGCAT--CCCCCAT--CCCCTTGAGAAATGCTTTGGTATAACATGAGTT--CA-GGAATATTAGA-CATTGGGAGTAAGTCACCAGGACAA----------------GGTAAACCCT-------------GCCTTGGAGAATATCACCCGCATCTG--TTTAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923318 244 - 7032639 CAAAGTCTCTTTGATGGCC---------CCTCTATATCTCTAAGGCCTAGTCACCTCTCCCTCCACTGAGTTACAT-------C----TCTGTTTCTGCTCTCAGCTTTTT--GAGTACGGAAATTTCTCCCTTTCATCTCTGCGT--CCCCCAT--CCCCTTGAGAAAGGTTTTGGTATAACAAGAGTT--CA-GGAACATTAGA-CATTGGGAGTAAGTCACCAGGACAA----------------GGTAAATCCT-------------GCCTTGGAGAATATCACCCCCATCTG--TATAGA i aotNan1.NW_018502359v1 I 274 C 0 s otoGar3.GL873537 22730840 241 + 28711273 AAAAAT---TCTGATGCCT---------CCCCTGTCTTTCTGAGGCACAGTCACTCCTCTTTCCTC-GAGTTCTGGGACCTAGC----TCTCCTTCTGCTCTCAG------------------------TCTTTTCATGTCTGCAT--CCCCCACGGTGCCTTGAGAAGGGCTTGGCTATAGTGGGAGCT--CG-GGAATATTGGA-TGGTTGGAGTAAGTCACTGGGACAAGTGACTTACTGA--GGGGACAACCCT-------------GCCTCAGTGAACATCATCCACATCTG--TATACA i otoGar3.GL873537 C 0 I 5 s canFam3.chr9 21348815 276 + 61074082 TAAAGTTTCTTTGCTGTCCTGGCGCCCACCCCCGCAGCTCT----CTCTGTGACTTCTCTTTCTTTTGAATGACATGAC----CTATTTCTCTTTCAGCTGTAAGCTTTTTTCAGAGATGGGAATTTCTTGGATCCATCATTGCAA--CCCTCATGGTGCCTTGAGAGGGCTCTGAGTATTGGAGGAGCTTATA-TGAATATTGAATCACTTGGAGTAGCTCATGGGAACAA---GTTCACTGATGGTGGTAAACCCT-------------GCCTTGGTGAATATTGCCCATATTTG--TACATA i canFam3.chr9 C 0 I 5 s dasNov3.JH570468 323447 239 - 852752 taaagtatcttcgatgccc-----------------------------agaaacatctctctCCTCTGAGTTCCATGCG----A--------TTTACGCTCTGAGCTTTTT--GAGAGGCAGCGATTCCTTTGTTCTTCTCTGTGTGACCCTTGC--TGCCTTGAGAAGGGCTTTGCTGTAGCAGGAGCT--CAGGGAATATTTGA-TCATTGGAGTAGGTCACTGGGACAA----------------GGTCAGTGATGGTGATGAGACTGGCCTTGGCAAATATCCCCCACATCTG--CACATA i dasNov3.JH570468 C 0 I 5 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35848574 238 - 65901067 I a score=600372.000000 s hg38.chr17_GL383564v2_alt 18540 42 + 133151 GTTACAGAGAAGGGTCCCCATGCGTCTCATTGACTGTATATG s panTro5.chr17 16212420 42 + 83181570 GTTACAGAGAAGGGTCCCCATGCGTCTCATTGACTGTATATG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119777 42 + 83442489 GTTACAGAGAAGGGTCCCCATGCGTCTCATTGACTGTATATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954862 42 + 4267968 GTTACAGAGAAGGGTCCCCATGCGTCTCATTGACTGTATATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1933212 42 - 2193130 GTTACAGAAAAGGGTCCCCATGGGTCTCATTGACTGTATATG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007564 42 - 77216781 GTTACAGGGAAGGGTCCCCATGGGTCTCATTGACTGTATATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27920164 42 - 80997621 GTTACAGGGAAGGGTCCCCATGGGTCTCATTGACTGTATATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976427 42 + 10377808 GTTACAGGGAAGGGTCCCCATGGGTCTCATTGACTGTATATG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863559 42 - 8458610 GTTACAGGGAAGGGTCCCCATGGGTCTCATTGACTGTATATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819904 42 + 75148670 GTTACAGGGAAGGGTCCCCATGGGTCTCATTGACTGTATATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2043081 42 + 4244037 GTTACAGGGAAGGGTCCCCATGGGTCTCATTGACTGTATATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2071237 42 + 4569836 GTTACAGGGAAGGGTCCCCATGGGTCTCATTAACTGTATATG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040469 42 - 159171411 GTTACAGAGAAGAGTCCCTATGGATCTCATTGACTGTATATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762830 42 + 3513951 GTTACAGAGAAGAGTCCCCATGGAACTCATTGACTGTATATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812285 42 + 1920343 GTTACAGAGAAGAGTCCCCATGGAGCTCATTGACTGTATATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923562 42 - 7032639 GTTATAGAGAAGAGTCCCCATGGAGCTCATTGACTGTATATG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35848812 42 - 65901067 GTTACAAGGAAGTGTCCGCATGGGTCTCATTGACTGCGTACA i micMur3.chr16 I 238 C 0 s otoGar3.GL873537 22731086 42 + 28711273 GTTATGAGGAAGTGTCCCTGTGGGTCTCATTGACTGTATACA i otoGar3.GL873537 I 5 C 0 s canFam3.chr9 21349096 42 + 61074082 GTTAAGGGGAAGTGTTTCCATGGGTCTTACTGATTGTATATG i canFam3.chr9 I 5 C 0 s dasNov3.JH570468 323691 41 - 852752 GTTATAG-GAAATGTCCTGATGGGTGTCACTGATTGTACTTG i dasNov3.JH570468 I 5 I 7805 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I a score=2104969.000000 s hg38.chr17_GL383564v2_alt 18582 163 + 133151 GGACCAACTGGTGGCTGGCTGGTTGTCATGGCTGAATAGCCAGTGGCTCCAGCATGGTTTACACAAAAGTCCTGGGCAAGAAGGTTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTAATCAGAAATCCCACTGTACAGCCCGCACttaagagtgata s panTro5.chr17 16212462 163 + 83181570 GGACCAACTGGTGGCTGGCTGGTTGTCATGGCTGAATAGCCAGTGGCTCCAGCATGGTTTACACAAAAGTCCTGGGCAAGAAGGTTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTAATCAGAAATCCCACTGTACAGCCCGCACttaagagtgata i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119819 163 + 83442489 GGACCAACTGGTGGCTGGCTGGTTGTCATGGCTGAATAGCCAGTGGCTCCAGCATGGTTTACACAAAAGTCCTGGGCAAGAAGGTTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTAATCAGAAATCCCACTGTACAGCCCGCACttaagagtgata i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3954904 163 + 4267968 GGACCAACTGGTGGCTGGCTGGTTGTCATGGCTGAATAGCCAGTGGCTCCAGCATGGTTTACACAAAAGTCCTGGGCAAGAAGGTTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTAATCAGAAATCCCACTGTACAGCCCGCACttaagagtgata i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1933254 163 - 2193130 GGACCAACTGGTGGCTGGCTGGTTGTCACGGCTGAACAGCCAGTGGCTCCAGCATGGTTTACACAAAAGTCCTGGGCAAGAAGGTTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTAATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007606 163 - 77216781 GGACCAAGTGGTGGCTGACTGGTTGTCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTACACGAAACTTCTGGGCAAGAAGATTTTCT-GGCCATCTACT-GGCTGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27920206 163 - 80997621 GGACCAAGTGGTGGCTGACTGGTTGTCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTACACGAAACTTCTGGGCAAGAAGATTTTCT-GGCCATCTACT-GGCTGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976469 163 + 10377808 GGACCAAGTGGTGGCTGACTGGTTGTCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTACACGAAACTCCTGGGCAAGAAGATTTTCT-GGCCATCTACT-GGCTGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863601 163 - 8458610 GGACCAAGTGGTGGCTGACTGGTTGTCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTACACCAAACTCCTGGGCAAGAAGATTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64819946 163 + 75148670 GGACCAAGTGGTGGCTGGCTGGTTGTCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTATACCAAAGTCCTGGGCAAGAAGGTTTTCT-GGTCATCTACT-GGCAGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2043123 163 + 4244037 GGACCAAGTGGTGGCTGACTGGTTGTCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTACACGAAACTCCTGGGCAAGAAGATTTTCT-GGCCATCTACT-GGCAGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2071279 163 + 4569836 GGACCAAGTGGTGGCTGGCTGGTTATCATGGCTGAACAGCCAGTGGGACCAGCATGGTTTACACCAAAGTCCTGGGCAAGAAGGTTTTCT-GGCCATCTACT-GTCAGCCTTTCAATCTAAACTCATCAGAAATCCCACTGTACAGCCCCCACTTAAGAGTGATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040511 164 - 159171411 GGATGAGTTGGTGGCTGGGTGGTTGTCATGGTTGAACAGCCAGTGGCACCAGCATGGTTTACACAAAAGTCCTGGACAAGAAGTTTTACT-GGTCATCTACTGGGCAGCCTTTTAATCTAAACTCATCAGAAATTCCACTTTAGAGCTCCCACttaagagtgata i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1762872 164 + 3513951 GGACGAGTTGGTGGCTAGGTGGTTGCCATGGTTGAACAGCCAGTGGCACCGGCATGGTTTACACAAAAGTCCTGGACAAGGAGGTTTTCT-GGTCATCTACTGGGCAGCCTTTTAATCTAAACTCATCGGAAATTCCACTTTAGAGCTCCCACTTAAGAGTGATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812327 164 + 1920343 GGATGAGTTGGTGGCTGGGTGGTTGTCATGGTTGAACAGCCAGTGACACCAGCATGGTTTACACAAAAGTCCTGGACAAGAAGGTTTTCT-TGTCATCTATTGGGCAGCCTTTTAATCTAAACTCATCAGAAATTCCACTTTAGAGCTCCCACTTAAGAGTGATA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923604 164 - 7032639 GGACGAGTTGGTGGCTGGGTGGTTGTCATTGTTGAACAGCCAGTGGCACCAGCATGGTTTACACAAAAGTCCTAGACAAGAAGGTTTTCT-GGTCATCTACTGGGCAGCCCTTTAATCTAAACTCATCAGAAATTCCACTTTAGAGCTCCCACTTAAGAGTGATA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35848854 163 - 65901067 GGACCAGCTAGTGGCTGGGTGGCTGTCAT-GCGGAACTGCTGGTGGCACCAGCATGGTTCACACAAAAGTCCTGGGCAAGAAGGTTTTCTGGGCCACCTACT-GGCAGCCTCTTAACCTAAACTCATCTGAAATTCCATTCTAGGGCCCCCACTTAAGAGTGATA i micMur3.chr16 C 0 I 632 s otoGar3.GL873537 22731128 164 + 28711273 GAACCAGCTGGTGGCTGGACGGTTGTCATGGCTGAACAGTTGGTGGCACCAGCATGGTTCATACAAAAGTTCTAGGCGAGAAGTTTTTCTGGGCCATCTACC-GGCAGCCTTTTCATCTGAATTCACCAGAAATTCCATTCTAGGGCCCCCACTTAAGACTGACG i otoGar3.GL873537 C 0 I 10 s canFam3.chr9 21349138 163 + 61074082 GGACCAACTGATAGATGAGTGGATATCATGGCTGAAGAGTTGGTGGCACTAGCCTACTGCACATAACAGTCCTTGGCAAGAAGGTCTGCT-GGTCATCTGCT-GGCAGCCTCTTAATCTCAGTTCATCAGAAATTCCATTCTAGGGCCCTCACTTAAGAGTAGTA i canFam3.chr9 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e dasNov3.JH570468 323732 7805 - 852752 I a score=104839.000000 s hg38.chr17_GL383564v2_alt 18745 14 + 133151 gtaactgtt----acatc s panTro5.chr17 16212625 14 + 83181570 gtaactgtt----acatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119982 14 + 83442489 gtaactgtt----acatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3955067 14 + 4267968 gtaactgtt----acatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1933417 14 - 2193130 GGAACTGTT----ATATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007769 14 - 77216781 GGAACTGTT----ACATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27920369 14 - 80997621 GGAACTGTT----ACATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976632 14 + 10377808 GGAACTGTT----ACATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863764 14 - 8458610 GGAACTGTT----ACATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64820109 14 + 75148670 GGAGCTGTT----ACATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2043286 14 + 4244037 GGAACTGTT----ACATC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2071442 14 + 4569836 CGAACTGTT----ACATC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040675 14 - 159171411 gaaactgtt----ataac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1763036 12 + 3513951 GAAACTTCT----AT--C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812491 14 + 1920343 GAAACTGTT----ATATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923768 14 - 7032639 GAAACTGTT----ATATC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22731302 18 + 28711273 GAGGCTCTTTCTAACATC i otoGar3.GL873537 I 10 C 0 s canFam3.chr9 21349301 8 + 61074082 ----------GAGACTCC i canFam3.chr9 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35849017 632 - 65901067 I e dasNov3.JH570468 323732 7805 - 852752 I a score=6818768.000000 s hg38.chr17_GL383564v2_alt 18759 607 + 133151 atgg-----agcatgtccagggaaacattcctgggat-ggcaaggggactttgaaccatgctgaatg------------cagaacCAGGAGTAAGAAATCTCACATCTG-CCACAaagagctgagaa-------t-atggcagaatgattagatttatcctgtatgggacaccatgggggagaactggAGAGTAAATGAACTAAAGGGCCAACTCtctgacttacttgccaatgtattactagcctccag-c-tcag-cccctggttggcacagagtaggtacttcatagctatttgt----tgaatgaatgaatGAATGACCCAACAAAAGCTATAGGGAGAGGTAACACGAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-AAAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGCTG-TTTGTAAGCCACAGGAAC------------TGA--TG------GTGTAAGCTCTCCTGGAAAATGGTGgactagatgactagttggaggaaggtcatcgaa---gggatttaatgcaaatgggtactagactagaggaccctgaagtccctttcgtcctggagatgctatgTTGTAGTGCCAGCTGAA--AC-ACACTTG s panTro5.chr17 16212639 607 + 83181570 atgg-----agcatgtccagggaaacattcctgggat-ggcaaggggactttgaaccatgctgaatg------------cagaacCAGGAGTAAGAAATCTCACATCTG-CCACAaagagctgagaa-------t-atggcagaatgattagatttatcctgtatgggacaccatgggggagaactggAGAGTAAATGAACTAAAGGGCCAACTCtctgatttacttgccaatgtattactagcctccag-c-tcag-cccctggttggcacagagtaggtacttcatagctatttgt----tgaatgaatgaatGAATGACCCAATAAAAGCTATAGGGAGAGGTAACACGAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-AAAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGCTG-TTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaaatggtggactagatgactagttggaggaaggtcatcaaa---gggatttaatgcaaatgggtactagactagaggaccctgaagtccctttcgtcctgcagatgctatgTTGTAGTGCCAGCTGAA--AC-ACACTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16119996 607 + 83442489 atgg-----agcatgtccagggaaacattcctgggat-ggcaaggggactttgaaccatgctgaatg------------cagaacCAGGAGTAAGAAATCTCACATCTG-CCACAaagagctgagaa-------t-atggcagaatgattagatttatcctgtatgggacaccatgggggagaactggAGAGTAAATGAACTAAAGGGCCAACTCtctgatttacttgccaatgtattactagcctccag-c-tcag-cccctggttggcacagagtaggtacttcatagctatttgt----tgaatgaatgaatGAATGACCCAATAAAAGCTATAGGGAGAGGTAACACGAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-AAAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGCTG-TTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaagtggtggactagatgactagttggaggaaggtcatcaaa---gggatttaatgcaaatgggtactagactagaggaccctgaagtccctttcgtcctgcagatgctatgTTGTAGTGCCAGCTGAA--AC-ACACTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3955081 607 + 4267968 atgg-----agcatgtccagggaaacattcctgggat-ggcaaggggactttgaaccatgctgaatg------------cagaacCAGGAGTAAGAAATCTCACATCTG-CCACAaagagctgagaa-------t-atggcagaatgattagatttatcctgtatgggacaccatgggggagaactggAGAGTAAACGAACTAAAGGGCCAACTCtctgacttacttgccaatgtattaccagcctccag-c-tcag-tccctggttggcacagagtaggtacttcatagctatttgt----tgaatgaatgaatGAATGACCCAACAAAAGCTATAGGGAGAGGTAACACGAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-AAAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGCTG-TTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaaatggcggactagatgactagttggaggaaggtcatcaaa---gggatttaatgcaaatgggtactagactagaggaccctgaagtccctttcgtcctggagatgctatgTTGTAGGGCCAGCTGAA--AC-ACACTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1933431 612 - 2193130 Atgg-----agcatgtccagagaaacattcctgggat-ggcaaggggactttgaaccatgctgaatg------------cagaacCAGGAGTGAGAAATCTCACATCTA-CCACgaagagctgagaa-------t-acggcagaatgattagatttatcctgtatgggacaccat-ggggagaactggAGAGTAAATGAACTAAAGGGCCAACTCtctgacttacttgccaatgtattaccagcctccag-c-tcag-tccctggttggcacagagtgggtacttcatagctatttgttgaatgaatgaatGAATGAATGACCCAACAAAAGCTATAGGGAGAGGTAACACGAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-AAAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTATTCATTTTCTGGATACCAGTGTCTTGCACAAAGACTGGGAAGCTG-TTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaaatggcggactgcatgactagttggaggaaggtcatcaaa---gggatttaatgcaaatgggtactagactagaggaccctgaagtccctttcgtcctggagatgctatgttgtaaGGCCAGCTGAAACAC-ACACTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30007783 609 - 77216781 ACgg-----agcgtgtccagaggaatattcctgggat-ggcaaggggatctagaaccatgctgaatg------------cagaacCATGAGTGAGAAATCTCACATCTG-CCACAAAGAACTGAGAa-------t-gtgacagaatgattagatttatcctgtatgggacacctt-ggggagaactggagagtaaatgaactacagggccaactctctgacttacttgccaatatattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatgtttgt----tgaatgaatgaatGAATGACCCAAAGAAAGCTACAGGGAGAGGTAACACAAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ACAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-CTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaaatggtggactggatgactagttagaggaaggccattaaa--ggggatttaatgcaaatgggtactagactagaggatcctgaagtccctttcgtcctggagatgctatgttttaGGGCCAGCTGAAGCAC-ACACTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27920383 609 - 80997621 ACgg-----agcgtgtccagaggaatattcctgggat-ggcaaggggatctagaaccatgctgaatg------------cagaacCATGAGTGAGAAATCTCACATCTG-CCACAAAGAACTGAGAa-------t-gtgacagaatgattagatttatcctgtatgggacacctt-ggggagaactggagagtaaatgaactacagggccaactctctgacttacttgccaatatattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatgtttgt----tgaatgaatgaatGAATGACCCAAAGAAAGCTACAGGGAGAGGTAACACAAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ACAAATCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-CTTGTAAGCCACAGGAAC------------TGA--TG------GTGTGAGCTCTCCTGGAAAATGGTGgactggatgactagttagaggaaggccattaaa--ggggatttaatgcaaacaggtactagactagaggatcctgaagtccctttcgtcctggagatgctatgttttaGGGCCAGCTGAAGCAC-ACACTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1976646 609 + 10377808 ACgg-----agcgtgtccagaggaatattcctgggat-ggcaaggggatctagaaccatgctgaatg------------cagaacCATGAGTGAGAAATCTCACATCTG-CCACAAAGAACTGAGAa-------t-gtgacagaatgattagatttatcctgtatgggacacctt-ggggagaactggagagtaaatgaactacagggccaactctctgacttacttgccaatatattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatgtttgt----tgaatgaatgaatGAATGACCCAAAGAAAGCTACAGGGAGAGGTAACACAAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ACAATTCT---CTATAATGTGAGTGCCTTAAAGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-CTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaaatggtggactggatgactagttagaggaaggccattaaa--ggggatttaatgcaaacgggtactagactagaggatcctgaagtccctttcgtcctggagatgctatgttttaGGGCCAGCTGAAGCAC-ACACTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1863778 605 - 8458610 ACgg-----agcgagtccagaggaatattcctgggat-ggcaaggggatttagaaccatgctgaatg------------cagaacCATGAGTGAGAAATCTCACATCTG-CCACAaagagctgagaa-------t-gtggcagaatgattagatttatcctgtatgggacaccat-ggggagaactggagagtaaatgaactacagggccaactctctgacttacttgccaatgtattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatgtttgt--------tgaatgaatgaatGACCCAAAGAAAGCTATAGGGAGAGGTAACACAAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ATAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-CTTGTAAGCCACAGGAAC------------TGA--TG------GTGTGAGTTCTCCTGGAAAATGGTGgactggatgactagttagaggaaggccattaaa--ggggatttaatgcaaacagatactagactagaggatcctgaagtccctttcgtcctggagatgctatgttttaGGGCCGGCTGAAACAC-ACACTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64820123 610 + 75148670 ACgg-----agcgtgtccagaggaatattcctgggat-ggcaaggggatttagaaccatgctgaatg------------cagaacCATGAGTGAGAAATCTCACATTTG-CCACAAAGAACTGAGAa-------t-gtggcagaatgattagatttatcctgtatgggacaccat-ggggagaactggagagtaaatgaactacagggCCAACCCtctgacttacttggcaatgtattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatgtttgttgaatgaacgaatGAATGAATGACCCAAAGAAAGCTATAGGGAGAGGTAACACAA----AGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ACAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-CTTGTAAGCCACAGGAAC------------TGA--TG------GTGTGAGCTCTCCTGGAAAATGGTGgactggatgactagttagaggaaggccattaaa--ggggatttaatgcaaacgggtactagactagaggatcctgaagtccctttcgtcctagagatgctatgttttaGGGCCGGCTGAAACATAACACTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2043300 613 + 4244037 ACgg-----agcgagtccagaggaatatttctgggat-ggcaaggggatttagaaccatgctgaatg------------cagaacCATGAGTGAGAAATCTCACATCTG-CCACAaagagctgagaa-------t-gtggcagaatgattagatttatcctgtatgggacaccat-ggggagaactggaaagtaaatgaactacagggccaactctctgacttacttgccaatgtattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatgtttgttgaatgaatgaatGAATGAATGACCCAAAGAAAGCTATAGGGAGAGGTAACACAAAGGTAGATTTG-------------------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ATAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATTTTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-CTTGTAAGCCACAGGAAC------------TGA--TG------GTGTGAGTTCTCCTGGAAAATGGTGgactggatgactagttagaggaaggccattaaa--ggggatttaatgcaaacaggtactagactagaggatcctgaagtccctttcgtcctggagatgctatgttttaGGGCCAGCTGAAACAC-ACACTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2071456 609 + 4569836 Atgg-----agcgtgtccagaggaatattcctgggat-ggcaaggggatttagaaccatgctgaatg------------cagaaccatgagtgagaaatctcacatctg-ccacaaacagctgagaa-------t-gtggcagaatgattagatttatcctgtatgggacaccat-ggggagaactggagagtaaatgaactacagggCCAACCCtctgacttacttgccaatgtattgccagcctctgg-c-tcag-tccctggctggcacagagtaggtactcaataaatatttgt----tgaatggatgaaCGAATGACCCAAAGAAAGCTACAGGGAGAGGTAACACAAAGGTAGATTTG-------------------------------------------------------AGA------------------------------------------------------AG-ACTTTCTA-ACAATTCT---GTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTGTTAATATTCTGGATACCAGTGTCTTGCACAAAGCGTGGGAAGCTG-TTTGTAAGCCACAGGAAC------------TGA--TG------GTgtgagctctcctggaaaatggtggactagatgactagttagaggaaggccattaaa--ggggatttaaagcaaacgggtactagactagaggatcctgaagtccctttcgtcctggagatgctatgttttaGGGCAGGCTAAAACAC-ACACTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46040689 707 - 159171411 atgg-----agcatgtccagaggaatattcctgggat-ggcaaggggacttagaactatgctgaatg------------cagagccaggagtgagaaatctcacatctg-ccacaaagagctgaggatctgccct-gtggcagaatgattagatgtatcctgtatgggacaccat-gggtagaactggagagtaaatgaaCTTAAGTGCCAGCTCtctgacttacttgctaatgtcttaccagcttctag-g-tcag-cttctggctggcacagagtaggtactcaataaatatttgttgaatgaatgaatgaatgaatgaCCCAATGAAAGCTATAGGCAGAGGTAACACAAAGGCAGATTTGCATCTGCATAAACGCAACTAACAGACTTTC-------------------------TAACAATTCTTTATAATAACACAAAGGTAGATTTGCTTCTGCATAAATGCAGCTAACAG-ACTTTCTA-ACAATTCT---CTCTAATGTGAGTGCCTTAAGGCTGAGCTAGCCGCTG-TAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGCTG-TTTGTTAGCCATAGGAAC------------TGA--TG--CGTAGTGTGAGCTCTCCCAGAAAATGGTGgactggatgactagctggaggaaggttatcaaa--ggggatttgatgcaaatgggtactagactagaggaccttgaagtccctttcatcctggagatgctgtgttttaGGGCCGGCTGAAACAC-ACATTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1763048 704 + 3513951 ATGG-----AGCATGTCCAGAGGAATATTCATGGGAT-GGCAAGGAGACTTAGAACCATGCTGAATG------------CAGACCCAGGAGTGAGAAATCTCACATCTG-CCGCAAGGAGCtgaagatctgccat-gaggcaaaatgattagatttatcctgtatgggacactgt-gggtagaactggAGAGTAAATGAACTACAATGCCTGCTCtctgacttacttgctaatgtcttaccagcctccag-g-tcag-tacctggctggcacagagtaggtactcaataaatatttgt----tgaatgaatgaatGAATGACCCAATGAAAACTATAGGCAGAGGTAACACAAAGGCAGATTTGTGTCTGTATAAACGTAACTAACAGACTTCC-------------------------TAACAATTCTTTATAATAACACAAAGGTAGATTTGCGTCTGCATAAATGCAACTAACAG-ACTTTCTA-ACAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTA-TAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGC-G-TTTGTAAGCCATAGGAAC------------TGA--Tggtggtagtgtgagctctcctggaaaatggtggactggatgactagttggaggaaggttatcaaa--ggggatttgatgcaaatgggtactagactagaggaccttgaagtccctttcatcctggagatgctatgttttaGGGCCAGCTGAAACGC-ACATTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1812505 714 + 1920343 ATGGAGCATAGCATGTCCAGAGGAATATTCCTGGGTT-GGCAAGGGGACTTAGAACCATGCTGAATG------------CAGACCCAGGAGTGAgaaatctcatatctg-ccacaaggagttgaggatctgccat-gtggcagaatgattagatttatcctgtatgggacaccat-gggtagaactggAGAGTAAATGaactaaaatgccagctctctgacttacttgctaatatcttaccaggctccag-g-tcag-tacctggctggcacagagtaggtactcaataaatatttgttgaatgaatgaatgaACGAATGACCCAATGAAAGCTATAGGCAGAGGTAACACAAAGGCAGATTTGCGTCTGCATAAACACAACTAGCAGATTTTCTAACAATTCTCTATAATAGCACAAA-------------------------GGTAGATTTGTGTCTGCATAAATGCAACTGACAG-ACTTTCTA-ACAATTCT---CTATAATATGAGTGCCTTAAGGCTGAGCTAGCTGCTG-TAATTTTCTGGATACCAGTGTCTTGCACAAAGCCTGGGAAGCTG-TTTGTAAGCCATAGGAAC------------CGA--TGGTAGTAGTgtgagctctcctggaaaatggtggactggatgactagttggaggaaggttattaaa--ggggatttgatgcaaatgggtactagactagaggaccttgaagtccctttcatcctggagatgctatgttttaGGGCCAGCTGAAACAC-ACATTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6923782 701 - 7032639 Atgg-----agcatgtccagaggaatattcctgggat-ggcaaggggacttagaaccatgctgaatg------------cagacccaggagtgagaaatctcacatctg-ccacaaggagctgaggatctgccat-gcggcagaatgataagatttatcttgtatgggacaccgt-gggtagagctggagagcaaatgaactaaaatgccagCTCtctgacttacttgctaatgtcttaccagcctccgg-g-tcag-tctctggctggcacagagtaggtactcaataaatatttgt--------tgaatgaatgaatGACCCAATCAAAGCTATAGGCAGAGGTAACACAAAGGTAGATTTGCGTCTGCATAAACGCAACTAACAGACTTTC-------------------------TAACAATTCTCTATAATAACACAAAGGTAGATTTGCATCTGCATAAATGCAACCAACAG-ACTTTCTA-ACAATTCT---CTATAATGTGAGTGCCTTAAGGCTGAGCTAGCTGCTG-TAATTTTCTGGATACCAGTGTCTTGCAAAAAGCCTGGGAAAAAG-TTTGTAAGGCATAGGGAC------------TGA--Tggtggtagtgtgagctctcctggaaaatggtggactggatgactagttggaggaagtttatcaaa--gtggatttgatgcaaatgggtactagactagaggaccttgaagtccctttcatcctggagatgctatgttttaAGGCCAGCTGAAACAC-ACATTTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22731320 602 + 28711273 CCAG-----AGTATATCCAGAG-AATATTCCCAGGAT-GGCAAGGGGCCCTAGAACCATGCTAAGAT------------AAAAATGAGGAGTGAGAATGATCACATCTG-TCACCAACAGCTAAAGGTCTGCCAT-GTGGCAGAATGA-------TATCCTCTGTGGGACCCCCT-AG---GAATTAGAAGGTAtgtgaacta-agggcaaactctctgacttccttgctaatgtgcccccagcctctgg-c-actgctacctgcctggcacggagcaggtcctcagtagacatttcc----tgaaagagtgagtGAAGAAACAAATGGAAGTGGTAGGCAGAAGC-GCAGGGAGGTAGAGTTGCATCCGCA-----------------------------------------------TGA------------------------------------------------------AG-ACTTTCTA-ACAATACT---CTATATTGTGGGAGGTTTACAATTTAGCCAGCTTCAATTTAT-TTCTGGATCCCAGTGTCTCATACAGAGCCTGGGAAGTTGTTTTGTG------AGGGAC------------TGAGCTG------ATACCAGCTGTCCTGAAAAATAATGGATCGGACAACTAGCTGGAGA----TTATCAGA--AGGGACTGAGCTCCAAAGGGTCAGAGACTAGAGGACACTGAGATGCCTTTTATCCTGGAGAT-TTATGGTTTAGGGCCAGCTGAAACAC-ATACTG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21349309 576 + 61074082 ATGG-----AGTGTATTCAGAGGAATGTACTCAGGGT-GGCgagggggatgagaac-----------------------------------------------aatctg-ccacaaagaactgaaggtctgccat-gtgggagg-------gactcatcctctgtgggaccccat-gggtagaactagaaagtaaattaa-tgaaaggcaaactctttgatttacttgctcatataccaccagcatccagcc-tcag-agcctgcctggcagagaatgggtactcggcccatgtttat--------tgaatgaatgCAGGAACAAATGAAAGCAATAGACATAAACAGCATGGAGGTAGATATGTCTCTGCA-----------------------------------------------TAA------------------------------------------------------AGAACTTTCTACACAGTcct---ctgtattgtaagcccctgaagacagagttagctattatttat-ctcttgactcaagcatcttgcacaaagcctgggaaactg-----tGACCTACAGGGGCCCACATGGCCAATGA--TG------GGATGGGC-CTTCTGGAGAGTGGTGGACTGGGCAATGAATT---GGAAAGTTATCAGG--AGGGATTTAATGCCAAAAAg-----gactggaggactttgagatcccttttggttc--agattccatgttttagaGCCACCTAAAACAT-GTACCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 331537 614 - 852752 ATGG-----TGACTAGTcagaggaatatgcccaggatggggaaggggacttagtaacgtgctaaacgaagactagttgaaagaactaggaatgAGAAATCTCACTTCTATCCACAAAGAGCTGTGGA-------TAGAAACAGAATGACTGGATTTATCCTCCATGGGACCCCAT-GGGTAGAATTAGGAAATAAATTAAGTACATGACAAACTCtctgacttatttgctaacatatcaccggtattcag-taccag-tgtctgcctgtcacagattaggtttgcagtaaatatttgt----tgaatgaatgaatGAAAGA-------AAAATTA-----------AATAGGGAGATAGATTTT----------------------------------------------------------------------------------------------------------------GG-CTTTTGTA-ATAACActctcctatattggaagctcctaaggcagaagcttcctgttatttat-ctctggatcctcggttcttgCCCAGGGTCAGGGGAACTG-----TGGACCACAGAGACTGAGTTGGCCAATGA--TG------GGATGGGTCATCCTGGAAGATGGTGGGCTGGACAACCACCTGGAGGGGAGTTATCAGAGAGTGGATCCAGTGCCAAAGGGTCCTAGATTGGAGAACTTTGAGATCTCTTTCAGCTTGGCAAGGCTATGTTTTAGGACCAGCTAAA-CAA-GCACTG- i dasNov3.JH570468 I 7805 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I e micMur3.chr16 35849017 632 - 65901067 I a score=148483.000000 s hg38.chr17_GL383564v2_alt 19366 9 + 133151 CTGCTTCAA s panTro5.chr17 16213246 9 + 83181570 CTGCTTCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16120603 9 + 83442489 CTGCTTCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3955688 9 + 4267968 CTGCTTCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934043 9 - 2193130 CTGCTTCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30008392 9 - 77216781 CTGCTTCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27920992 9 - 80997621 CTGCTTCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977255 9 + 10377808 CTGCTTCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1864383 9 - 8458610 CTGCTTCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64820733 9 + 75148670 CTGCTTCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2043913 9 + 4244037 CTGCTTCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072065 9 + 4569836 CTGCTTCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46041396 9 - 159171411 CTGCTTCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1763752 9 + 3513951 CTGCTTCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813219 9 + 1920343 CTGCTTCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6924483 9 - 7032639 CTGCTTCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35849649 9 - 65901067 CTGCCTCAC i micMur3.chr16 I 632 C 0 s otoGar3.GL873537 22731922 9 + 28711273 CTGCCTCAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21349885 9 + 61074082 CTGCCTCAA i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 332151 9 - 852752 CTGCCCCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I e proCoq1.NW_012135969v1 2930800 2927 + 8555354 I a score=3261869.000000 s hg38.chr17_GL383564v2_alt 19375 200 + 133151 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGCGGTCAAATTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTGTATTGAACAAATGGCCACTGGCTTATTTGTTTTAGAAATAGGGGAGGCCATAAAGGTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT s panTro5.chr17 16213255 200 + 83181570 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGCGGTCAAATTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTGTATTGAACAAATGGCCACTGGCTTATTTGTTTTAGAAATAGGGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16120612 200 + 83442489 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGCGGTCAAATTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTGTATTGAACAAATGGCCACTGGCTTATTTGTTTTAGAAATAGGGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3955697 200 + 4267968 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGCGGTCAAATTAGCATCCTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTGTATTGAACAAATGGCCACTGGCTTATTTGTTTTAGAAATAGGGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934052 200 - 2193130 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAATTAACATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGCCACTGGCTTATTTGTTTTAGAAACAGGGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30008401 196 - 77216781 GGGCCCTCGTGGTGAATTCATTCGTCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGC----TTGTTTTAGAAATAAGGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921001 196 - 80997621 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGC----TTGTTTTAGAAATAAGGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977264 196 + 10377808 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGC----TTGTTTTAGAAATAAGGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1864392 196 - 8458610 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCGTAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGC----TTGTTTTAGAAATAAGGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64820742 196 + 75148670 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGC----TTGTTTTAGAAATAAGGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2043922 196 + 4244037 GGGCCCTCATGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCGTAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGC----TTGTTTTAGAAATAAGGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072074 196 + 4569836 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTGGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAAATGGTCACTGGG----TTGTTTTAGAAATAAGGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46041405 200 - 159171411 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTCGTTAGCATAGACTAGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAACTGGCCATTGGCTTATGTGTTTTAGAAATAGAGGAGGTTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1763761 200 + 3513951 GGGCCCTCGTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTAGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAACTGGCCATTGGCTGATGTGTTTTAGAAATAGGGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813228 200 + 1920343 GGGCCCTCGTGGTGAATTCATTTATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTAGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAACTGGCCATTGGCTTATGTGTTTTAGAAATAGAGGAGGTTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6924492 200 - 7032639 GGGCCCTCCTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGTAGCATCTTTGTTAGCATAGACTAGAAGCTGGCTAGCTGCCCTTTTCCAGGGTTTATTGAACAACTGGCCATTGGCTTATATGTTTTAGAAATAGAGGAGGCTATAAAGCTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35849658 200 - 65901067 GGGCCCTCCTGGTGAATTCATTCGTCTCAGCGATGGGGCCAGGCTAGCATCTTCGTTAGCATAGACGGGAAGCTGGCCAGCTGCCCTCTTCCAGAGTTCATTGAACAGCTGGCCACCTGCTCATTTGTTTGAGAAATAGAGGAGGCCATAAAACTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2933727 200 + 8555354 GGGCCCTGCTGGTGAATCCATTCATCTTAGCAATGGGGTCAGGGCACCATCTTCGTTAGCATAGACTGGGAGCTGGCTAGCCGCCCTCTTCCGGAGTTCATTGAACAACCGGCCACCTGCTCATTTGTTTGAGAAATAGAGGAGGCCATAAAACTTCTGATGCTCTGAGTGTGTCTGAAGATTAAGGAAATTTAAATTTT i proCoq1.NW_012135969v1 I 2927 C 0 s otoGar3.GL873537 22731931 199 + 28711273 GGGCCTTCCTTGTGGATTCGTTCATCTTGGGAATGGGGTCAGGGCAGGACCTTCGTTAGCATAGACTCCAAGCTGGCCAGCTGCCCTTTCCCAGAAGGTATTGAACAACTGGCCACCTGCTTATTTGTTTTAGAAATTGAGGAGGTCATAAAGCTTCTTATGTTCTGAGTGTGTCTGAAGATAAaggaaatgtaaa-ttc i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21349895 199 + 61074082 GGCCCCTTCTGGTGAATTCATTCATCTTAGGAATGGGGTCAAAGCAGCGTCTTCGTTAGCATAGCCTAGAAGCTGGCTGGCTGCCCTTTTCCATGGCTTACTGAACAACTGGCCACTGGCTTATTTGTTT-AGGAATAGAGGAGGCCATAAAGCTTCTGATGCTCTGAGTGTTTCTAAAGATTAAGGAAATTTAAATTTT i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 332160 162 - 852752 GAGCCCTCC-------TCCATTTATCTTTGGTATGAGGTCAAAGTAGCGTTGCTGTTAGCATTGCCTGGAAGCTGGCTAGCTGCCCATTTCTAGGGTTTATTGAACAATGGGCCACTGGC----TTGTTTGA---------------------------ATGCTCTGAATGTGTCTGAAGATTAAGGAAACTTAAATTTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22021536 2017 - 122082543 I a score=3847745.000000 s hg38.chr17_GL383564v2_alt 19575 232 + 133151 GTTCTAGAGTCTCCCAAGCAATGGATAATCAAGGTAGATGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TACGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAGTCTGGTGAAAGGGTCAATA----GAAAGGAAAGATGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG s panTro5.chr17 16213455 232 + 83181570 GTTCTAGAGTCTCCCAAGCAATGGATAATCAAGGTAGATGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TACGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAGTCTGGTGAAAGGGTCAATA----GAAAGGAAAGATGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16120812 232 + 83442489 GTTCTAGAGTCTCCCAAGCAATGGATAATCAAGGTAGATGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TACGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAGTCTGGTGAAAGGGTCAATA----GAAAGGAAAGATGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3955897 232 + 4267968 GTTCTAGAGTCTCCCAAGCAATGGATAATCAAGGTAGATGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAGTCTGGTGAAAGGGTCAATA----GAAAGGAAAGATGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAATGTTAATCACTGCCTGCCTTAATTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934252 232 - 2193130 GTTCTAGAGTCTCCCAAGCAATGGATAATCAAGGTAGATGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGATCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAGTCTGGTGAAAGGGTCAATA----GAAAGGAAAGATGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30008597 232 - 77216781 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTTAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAATA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921197 232 - 80997621 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTTAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAATA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977460 232 + 10377808 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTTAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAATA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1864588 232 - 8458610 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAACA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64820938 232 + 75148670 GTTCTAGAGTCTCCCAAGCAATGGACGATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAATA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044118 232 + 4244037 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTTAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAATA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCTGCCTTAATTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072270 232 + 4569836 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATGAGGGACTCAATCTGGTGAGAGGGTCAACA----GAAAGGAAAGAGGCCTGGGAAGGTGGGTGAGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTCCCTGCCTTAATTAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46041605 213 - 159171411 GTTCTAGAGTCTCCCAAGCAATGGACAATCAGGGTAGGTGCATTTCAAAG-AAATGCAAAAATCTTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATG-------------------AGGGTCAATA----GAAAGGGAAGATGCCTGAGAAGGAGGGTGTGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCCACCTTAATTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1763961 213 + 3513951 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATCTTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATG-------------------AGGGTCAACA----GAAAGGGAAGATGCCTAGGAAGGAGGGTGTGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCCATCTTAATTAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813428 213 + 1920343 GTCCTAGAGTCTCCCAAGCAATGGACAATCCAGGTAGGTGCATTTCAAAG-AAATGCAAAAATCTTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATG-------------------AGGGCCAATA----GAAAGGGAAGATGCCTGAGAAGGAGGGTGTGAC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCCACCTTAATTAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6924692 213 - 7032639 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGCAAAAATATTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCTGTAAACAAGGGTGATG-------------------AGGGTCAATA----GAAAGGGAAGATGCCTGGGAAGGAGGGTGTGGC-CCTGAGAACAGACACCATAAAGTGTTAATCACTGCCCACCTTAATTAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35849858 232 - 65901067 GTTCTAGAGTCTCCCAAGCAATGGACAATCAAGGTAGGTGCATTTCAAAGAAAATGTGAGAACATTTCGAAAGACCAAAGATCAAAGTTCTCGAG-TGTGCATCTTCTGTAAACAAGGATGAGGAGGGACTCAGGCTGGTGAGAGGGTCAGTA----GGAAGGAAAGATGCCGGGAAAGGCAGGCGAGG--CCTGGGAACAGACACCATAAAGTGTTAATCACTGCCCGCCCTAATTAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2933927 232 + 8555354 GTTCTAGAGTCTCCCAAGCAATGGTCCATCAAGGTAGGTGCATTTCAAAGAAAATGTAAGAACATTTCAAAAGATGAAAGATCAAAGTACTCGAG-TGTGTATCTTCTGTGAACAAGGATGAGGAGGGACTCAGGCTGCTGAGAGGGTCAGTA----GGAAGGAAAGATGCCCAGGAAGGCAGGCGAGG--CCTGGGAACAGACACCGTAAAGTGTTAATCATTGCCCGCCCTAATTAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22732130 232 + 28711273 gttctagagtctcccaagcaatggataatcaaggtaggtacatctcaaag-aaatgtaaggacatttcaaaAGATGAAAGATCAAAGTACTCAAGTTGTGTATCTTCCATAAACAAGAGCGAGGAGGGACTCAGGCTGGGGAGAGGGTCAGTA----GGAAGGAAAGATGCCTGGGAAGA-AGGCAAGGC-CCTGAGAACAGACATCATAAAGTATTAATCACTGCCCGCCCTAATTAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22023553 200 - 122082543 GTTCTCGAGTTTCACAAATAATGAACAAACCAGTCAGGTGCATTTCAAAG-AAATATAAGGGCATTTCAAAAGATAAAAGAT--AAACTGTTTGA-TGTTTTTCATCTCTAAGC-AGGGCCCGGAGGGATTTC----------AGGGTCAGGT----GGAAGGA-------------------GTAGGAC-CCCAGGAATAGACACTACGAAGCATTAATTGGTACCCATCTTAATTAG i mm10.chr11 I 2017 T 29644 s canFam3.chr9 21350094 232 + 61074082 AATTTAGAGTCTGCTAAGTAATGGACAATCAAGGTAGGTGCATTTCAAAG-AAATGTACGAA-GTTTCAAAAGATGAAAGATCAAAGTTCTTGAG-TATGTATCTTCT-TAAACAAGG-TGAAGAGGGAGTCAGT-GGGTGAGAGGACCAGTGTCTTACAAAGCAAGATGCC-AGAAAGGAGGGGGAGGTGCCTGAGAATAGACACCATAAAGTGCTAATCACTGCCTGCCTTAATTAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 332322 233 - 852752 GTTCTAGATTCTCCCCAAAAATGGACAATCAAGGTGGGTACATTTCAAAG-AGATGCAAGAACATTTCTAAAGAAGAAAGATGAAAGTTCTTGAG-TGTGTATCTTCTGTAAACAAGG-TGAAGAGAGACTCAGTCTGGTGAAAGGGTCAGTATCTAGGAAGGGTAGATGCCCAGAAAGGAGGGATGGTA-CCTGAGAACAGATGCCAT--ATTATTAATCACTGCCTGCCTTAATTAG i dasNov3.JH570468 C 0 C 0 a score=2632828.000000 s hg38.chr17_GL383564v2_alt 19807 186 + 133151 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTTCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCGTTTTTTTCTCACTCCCAAAAC-GCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCCAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac s panTro5.chr17 16213687 186 + 83181570 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTTCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCGTTTTTTTCTCACTCCCAAAAC-GCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCCAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121044 186 + 83442489 CCTGTAGACTCCAGAACACAGAAGCATAATTTTATTTTCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCGTTTTTTTCTCACTCCCAAAAC-GCTTATCTGTTTCACGTATGCACAGAGAAAGTCTTAATTGCCAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956129 186 + 4267968 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTTCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCGTTTTTTTCTCACTCCCAAAAC-GCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCCAACATCTgttttataggttg------tgtattgattttaattcagttcaaaatac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934484 186 - 2193130 CCTGCAGACTCCAGTACACAGAAGCATAATTTTATTTTCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCGTTTTTTTCTCACTCCCAAAAC-GCTTATCTGTTTCACCTATGCACAGGGAAAGTCTTAATTGCCAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30008829 186 - 77216781 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTCCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCC-TTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCTAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921429 186 - 80997621 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTCCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCC-TTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCTAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977692 187 + 10377808 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTCCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCTTTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCTCAGGGAAAGTCTTAATTGCTAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1864820 187 - 8458610 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTCCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATAAGCCTTTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCTAACATCTGttttataggttg------tgtattgattttaattcagttcaaaatac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821170 185 + 75148670 CCTGTAGACTCCAGTACACAGAAGCATAATTTTATTTCCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCC-TTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTCATTGCTAACATCTG-tttataggttg------tgtattgatttttattcagttgaaaatac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044350 187 + 4244037 CCTGTAGACTTCAGTACACAGAAGCATAATTTTATTTCCTGAAAATTGCAAACCAT-CAGTT----TTATT-ATGAGCCTTTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTCATTGCTAACATCTGttttataggttg------tgtattcattttaattcagttcaaaatac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072502 187 + 4569836 CCTGTAGACTCCAGTACACAGAAACATAATTTTATTTCCTGAAAATTGTAGACCAT-CAGTT----TTATT-ATGAGCCTTTTTTTTCTCACTCCCCAAACTGCTTATCTGTTTCACGTATGCACAGGGAAAGTCTTAATTGCCAACATCTGttttataggttg------tgtatttattttaattcagttcaaaatac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46041818 185 - 159171411 CCTGTAGACTCCAGTACACAGAAACATAATTTTATTTCCTGAAAATTGCAAACCATCCAGGT----TTATT-ATAAGCC---TTTTTCTCACTTCCAAAACTGCTTATCTGTTTCTCATATGCACAGAGAAAGCCTTAATTGCCAACATCTgttttataggttg------tattttctttttaattcagttcaaaatac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764174 186 + 3513951 CCTGTAGACTCCAGTACACAGAAACATAATTTTATTTCCTGAAAATTGCAAACCATCCAGTT----TTATT-ATAAGCC--TTTTTTCTCACTTCCAAAACTGCTTATCTGTTTCTCGTATGCACAGGGAAAGTCTTAATTGCCAACATCTgttttatagcttg------tattttctttttaattcagttcaaaatac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813641 185 + 1920343 CCTGTAGACTCCAGTACACAGAAACATAATTTTATTTCCTGAAAATTGCAAACCATCCAGTT----TTATT-ATAAGCC--TTTTTTCTCACTTCCAAAACTGCTTATCTGTTTCT-GTATGCATGGGAAAAGTCTTAATTGCCAACATCTgttttataggttg------tattttctttttaattcagttcaaaatac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6924905 186 - 7032639 CCTGTAGACTCCAGTACATAGAAACATAATTTTATTTCCTGAAAATTGCAAACCACCCAGTT----TTATT-ATAAGCC--TTTTTTCTCACTTCCAAAACTGCTTATCTGTTTCTCACATGCACAAGGAAAGTCTTAATTGCCAACATCTattttataggttg------tattttctttttaattcagttcaaaatac i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850090 186 - 65901067 CCTCGAGGCTCCAATACACAGCAACGTAATTTTATTTCCCCAAAATCACAAATCACTCAGTT----TTATTCATGAGCC---TTTCCCCCACACCCAAAACTGCTTATCTGTTTCACTTTTGAGCAGGGAAAGTCTTAATTGTCAAAATCAGtttgatatgttg------aattttcattttaattcagttcaaaatac i micMur3.chr16 C 0 I 18 s proCoq1.NW_012135969v1 2934159 184 + 8555354 CCTGTCGGCTCCAATACACAGCAA--TAATTTTATTTCTTAAAAATCACAAATCACTCAGTT----TTATTCATTAGCC---TTTTCCCCATGTCCAAAACTGCTTATCTGTTTCACTTTTGCACAGCGAAAGTCTTAATTGTCATAATCAGtttgatatgttg------agctttcattttaattcagttcaaaatac i proCoq1.NW_012135969v1 C 0 I 2 s otoGar3.GL873537 22732362 178 + 28711273 CCTGCAGACTCCAAAGCACAGCAGCTTAATTTTATTTCCTAAAAATTACAAATTACCCAGTT----TTATTCACGAGCC---TTTTCCCCACTTCCACAACCACTTATCTATTTTACTTTTACACCGGGAAAGTCTTAATTGCCAAAATCAGtttgatatgttg------aattttccttttaattcactt-------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21350326 183 + 61074082 CCTCTAGGCTCTAATGCACAAAAACATAACTTTATTTCTTGGGAATCACAGATTATCCTGTCTCAGTCATT-AAGTGTC-CCCCCTCCCCACTTTCCAAATTGCCTATTTGTCTCATGCTTGCACAGGGAAAGTCTTAATTGCCCAAATCTGT--------ttg------tatattcattttaagtcagattaaaatac i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 332555 185 - 852752 -------CTTCCAATACTCAGAAACAGAATTTCATTTCTTGGGAATCACAAATTACCCAGTT----TCGTTCATGAGTT---TGTTTTTCACTTCCAAAGCTGCTTATCTGTTTCACATCTGCACAGGGAAAGTCTTAATTGCCAAAACTGAtttgatatgttatcttttttttttcattttatttcagtcctaaatac i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T a score=147442.000000 s hg38.chr17_GL383564v2_alt 19993 18 + 133151 --ttaaaaatttttaaatta s panTro5.chr17 16213873 18 + 83181570 --ttaaaaatttttaaatta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121230 18 + 83442489 --ttaaaaatttttaaatta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956315 18 + 4267968 --ttaaaaatttttaaattt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934670 18 - 2193130 --ttaaaaatttttaaattt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009015 18 - 77216781 --ttaaaattttttttattt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921615 18 - 80997621 --ttaaaattttttttattt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977879 18 + 10377808 --ttaaaattttttttattt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865007 18 - 8458610 --ttaaaattttttttattt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821355 17 + 75148670 --tt-aaattttttttattt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044537 18 + 4244037 --ttaaaattttttttattt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072689 17 + 4569836 --ttaaaa-tttttttattc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042003 17 - 159171411 --ttaaaaa-tttttcattt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764360 18 + 3513951 --ttaaaaactttttcattt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813826 18 + 1920343 --ttaaaaactttttcattt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925091 18 - 7032639 --ttaaaaactttttcattt i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2934345 16 + 8555354 --tttaaa--tttctcattt i proCoq1.NW_012135969v1 I 2 C 0 s otoGar3.GL873537 22732540 16 + 28711273 --ttaaaa--tttctcagtt i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21350510 14 + 61074082 --ttaa----tttctcatct i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 332740 18 - 852752 cttttaaa--tttttcactt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e micMur3.chr16 35850276 18 - 65901067 I a score=929090.000000 s hg38.chr17_GL383564v2_alt 20011 64 + 133151 gatttcttatttaacccaaggagtattaaaaactgt---g----ttagttttcaaacaccaagattaattt s panTro5.chr17 16213891 64 + 83181570 gatttcttatttaacccaaggagtattaaaaactgt---g----ttagttttcaaacaccaagattaattt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121248 64 + 83442489 gatttcttatttaacccaaggagtattaaaaactgt---g----ttagttttcaaacaccaagattaattt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956333 63 + 4267968 gatttcttatttaacccaaggagtattaaaaactgt--------ttagttttcaaacaccaagattaattt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934688 64 - 2193130 gatttcttatttaacccaaggagtattaaaaagtgt---g----ctagttttcaaacaccaagatcaattt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009033 64 - 77216781 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagtttTCACAAACCAAGATCAATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921633 64 - 80997621 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagtttTCACAAACCAAGATCAATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977897 64 + 10377808 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagtttTCACAAACCAAGATCAATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865025 64 - 8458610 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagtttTCACAAACCAAGATCAATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821372 64 + 75148670 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagttttcaaacaccaagatcaattt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044555 64 + 4244037 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagtttTCACAAACCAAGGTCAATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072706 64 + 4569836 gatttcttctttaacccaaggagtattaaaaagtgt---g----ttagtttTCACACACCAAGATCAATTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042020 64 - 159171411 gattccttctttaatccaaggattattgaaatgtgt---g----ctagttttcaaacaccaagatcaattt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764378 64 + 3513951 gattccttctttaatccaaggattattgaaacgtgt---g----ttagttttcaaacaccaagatcaattt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813844 64 + 1920343 gattccttctttaatccaaggattattgaaatgtgt---g----ttagttttcaaacaccaagatcaattt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925109 64 - 7032639 gattccttctttaatccaaggattattgaaacgtgt---g----ttagttttcaaacaccaagatcaattt i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850294 64 - 65901067 gatttcttctttgactcaaggattattgaaaagtgt---g----ttagttttcaaACACCAAAATCAACTT i micMur3.chr16 I 18 C 0 s proCoq1.NW_012135969v1 2934361 64 + 8555354 gattgcctctttgacccaaggattattgaaaagtgt---g----ttcattttcaaacaCCAAAATCAATTT i proCoq1.NW_012135969v1 C 0 I 65 s otoGar3.GL873537 22732556 60 + 28711273 gctttcttctttgact----gattactgaaaagtgt---g----ctggtttttgaactccaaaatcaattt i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21350524 67 + 61074082 gatgtttcctttgacccatgggtaattaaaaagtgtctat----taagtttttagacaCCACAATCAATTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 332758 68 - 852752 gacttcttctttgacctgtgggtcatttaaaattgt---gttatttagtgtctgaacaccaagatcagttt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T a score=284417.000000 s hg38.chr17_GL383564v2_alt 20075 21 + 133151 tgaacttAGGTTTCATTTTCA s panTro5.chr17 16213955 21 + 83181570 tgaacttAGGTTTCATTTTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121312 21 + 83442489 tgaacttAGGTTTCATTTTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956396 21 + 4267968 tgaacttAGGTTTCATTTTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934752 21 - 2193130 ggaacttAGGTTTCATTTTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009097 21 - 77216781 GGAACTTAGGTTTCACTTTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921697 21 - 80997621 GGAACTTAGGTTTCACTTTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977961 21 + 10377808 GGAACTTAGGTTTCACTTTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865089 21 - 8458610 GGAACTTAGGTTTCACTTTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821436 21 + 75148670 ggaacttAGGCTTCACTTTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044619 21 + 4244037 GGAACTTAGGTTTCACTTTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072770 21 + 4569836 GGAACTTAGGTTTCACTTTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042084 21 - 159171411 ggaacttaggtttcattttca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764442 21 + 3513951 ggaacttAGGTTTCATTTTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813908 21 + 1920343 ggaacttAGGTTTCATTTTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925173 21 - 7032639 ggaacttAGGTTTCATTTTCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850358 13 - 65901067 --------GGTTTCCTTTTCA i micMur3.chr16 C 0 I 51 s otoGar3.GL873537 22732616 21 + 28711273 ggaatttaggtttcttttcca i otoGar3.GL873537 C 0 I 9 s canFam3.chr9 21350591 21 + 61074082 GGAAGTTAAGTTTCTTTTTTG i canFam3.chr9 C 0 I 15 s dasNov3.JH570468 332826 20 - 852752 -ggaattttgtttctctttcA i dasNov3.JH570468 C 0 I 15 e mm10.chr11 22023753 29644 - 122082543 T e proCoq1.NW_012135969v1 2934425 65 + 8555354 I a score=418541.000000 s hg38.chr17_GL383564v2_alt 20096 41 + 133151 GTTTTCTA--ATAATTTGTGTAAAGGAACTTTCCACC-TTTTTT s panTro5.chr17 16213976 41 + 83181570 GTTTTCTA--ATAATTTGTGTAAAGGAGCTTTCCACC-TTTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121333 41 + 83442489 GTTTTCTA--ATAATTTGTGTAAAGGAACTTTCCACC-TTTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956417 42 + 4267968 GTTTTCTA--ATAATTTGTATAAAGGAACTTTCCACCTTTTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934773 41 - 2193130 GTTTTCTA--ATAATTTGTATAAAGGAACTTTCCACC-ATTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009118 41 - 77216781 GTTTTCTA--ACAATTTGTATGAAGGAACTTTCCACC-TTTTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921718 41 - 80997621 GTTTTCTA--ACAATTTGTATGAAGGAACTTTCCACC-TTTTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1977982 41 + 10377808 GTTTTCTA--ACAATTTGTATGAAGGAACTTTCCACC-ATTTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865110 41 - 8458610 GTTTTCTA--ACAATTTGTATGAAGGAACTTTCCACC-TTTTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821457 41 + 75148670 GTTTTCTA--ACAATTTGTATGAAGGAACTTTCCACC-TTTTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044640 41 + 4244037 GTTTTCTA--ACAATTTGTATGAAGGAACTTTCCACC-TTTTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072791 41 + 4569836 GTTTTCTA--ACAATTTGCATGAAGGAACTTTCCACC-TTTTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042105 44 - 159171411 gttttctaatataattTTTATAAAATAACTTTCCACCTTTTTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764463 42 + 3513951 GTTTTCCA--ATAATTTTTATAAAATAACTTTCCACCTTTTTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813929 42 + 1920343 GTTTTCTA--ATAATTTTTATACAATAACTTTCCACCTTTTTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925194 42 - 7032639 GTTTTCGA--ATAATTTTTATAAAATAACTTTCCACCTTTTTTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22732646 37 + 28711273 gttttctg--ctcatattcataaaggaaaatttcatc-tc---- i otoGar3.GL873537 I 9 C 0 s canFam3.chr9 21350627 41 + 61074082 GTTATCCT--CTAATGTTTATACAGAAGACTTTTATC-TCCTTT i canFam3.chr9 I 15 C 0 s dasNov3.JH570468 332861 41 - 852752 GTTTTTCA--CTAATATTTATGAAGGAAGATTTAATC-TCTTTT i dasNov3.JH570468 I 15 C 0 e mm10.chr11 22023753 29644 - 122082543 T e proCoq1.NW_012135969v1 2934425 65 + 8555354 I e micMur3.chr16 35850371 51 - 65901067 I a score=750825.000000 s hg38.chr17_GL383564v2_alt 20137 53 + 133151 CTGCTACTTTCCTTCA--AAAGGAAGCTGG-CTATTTATTTTTCCTTATACTT---GAA--- s panTro5.chr17 16214017 53 + 83181570 CTGCTACTTTCCTTCA--AAAGGAAGCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121374 53 + 83442489 CTGCTACTTTCCTTCA--AAAGGAAGCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956459 53 + 4267968 CTGCTACTTTCCTTCA--AAAGGAAGCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934814 53 - 2193130 CTGTTACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009159 53 - 77216781 CTGCCACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921759 53 - 80997621 CTGCCACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978023 53 + 10377808 CTGCCACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865151 53 - 8458610 CTGCCACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821498 53 + 75148670 CTGCTACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044681 53 + 4244037 CTGCCACTTTCCTTCA--AAAGAAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072832 53 + 4569836 CTGTTACTTTCCTTCA--AAAGGAACCTGG-CTATTTATTTTTCCTTATACTT---GAA--- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042149 56 - 159171411 CTGTTACTTTCCTTCA--AAAGGAACCTGG-CTGTTTACTTTTCCTTATACTTGAGGAA--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764505 56 + 3513951 CTGTTACTTTCCTTCA--AAAGGAACCTGG-CTGTTTACTTTTCCTTATACTTGAGGAA--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1813971 56 + 1920343 CTGTTACTTTCCTTCA--AAAGGAACCTGG-CTGTTTACTTTTCCTTATACTTGAGGAA--- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925236 56 - 7032639 CTGTTACTTTCCTTCA--AAAGGAACCTGG-CTGTTTACGTTTCCTTATACTTGAGGAA--- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850422 53 - 65901067 CTGGTACTTTCCTTCA--AAAGGAACATGG-CTACTTATTTTTCCTCCTGTTT---GAG--- i micMur3.chr16 I 51 I 35 s proCoq1.NW_012135969v1 2934490 53 + 8555354 CTGGTACTTTCCTTCA--CAAGGAACATGG-TTACTTATTTTTCCTCCTATTT---GAG--- i proCoq1.NW_012135969v1 I 65 I 3 s otoGar3.GL873537 22732683 53 + 28711273 ctattattttccttca--aaaGGAATGTAG-GTACCTATTTTTCCTCCTATTT---AAG--- i otoGar3.GL873537 C 0 I 3 s canFam3.chr9 21350668 41 + 61074082 -------------TCA--TAAGGAACCTGGAATATTTATTTTTCCTTATATTT---GAG--- i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 332902 54 - 852752 CCATTGCTTTTTTTCATCAAAGGATCCTGG-ATATTTATTTTCT----GATTT---GAGGAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T a score=166864.000000 s hg38.chr17_GL383564v2_alt 20190 12 + 133151 AGTCGTCTTCCA s panTro5.chr17 16214070 12 + 83181570 AGTCGTCTTCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121427 12 + 83442489 AGTCGTCTTCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956512 12 + 4267968 AGTCGTCTTCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934867 12 - 2193130 AGTCGTCTTCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009212 12 - 77216781 AGTCATCTTCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921812 12 - 80997621 AGTCATCTTCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978076 12 + 10377808 AGTCATCTTCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865204 12 - 8458610 AGTCATCTTCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821551 12 + 75148670 AGTCATCTTCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044734 12 + 4244037 AGTCATCTTCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072885 12 + 4569836 CGTCATCTTCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042205 12 - 159171411 AGTCAGCTTCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764561 12 + 3513951 TGTCAGCTTCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814027 12 + 1920343 AGTCAGCTTCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925292 12 - 7032639 AGTCAGCTTCCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2934546 12 + 8555354 AGTCAGCTTCCG i proCoq1.NW_012135969v1 I 3 C 0 s otoGar3.GL873537 22732739 12 + 28711273 GGTCAGATTCCA i otoGar3.GL873537 I 3 C 0 s canFam3.chr9 21350712 12 + 61074082 AGTTAGCTTCCA i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 332956 12 - 852752 AGTCAGCTTCCG i dasNov3.JH570468 C 0 T 21197 e mm10.chr11 22023753 29644 - 122082543 T e micMur3.chr16 35850475 35 - 65901067 I a score=456868.000000 s hg38.chr17_GL383564v2_alt 20202 40 + 133151 G-GGCAGATCCCTACCTTTCACTCACCTTTGCCTCAAGACC s panTro5.chr17 16214082 40 + 83181570 G-GGCAGATCCCTACCTTTCACTCACCTTTGCCTCAAGACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121439 40 + 83442489 G-GGCAGATCCCTACCTTTCACTCACCTTTGCCTCAAGACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956524 40 + 4267968 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934879 40 - 2193130 A-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009224 40 - 77216781 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921824 40 - 80997621 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978088 40 + 10377808 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865216 40 - 8458610 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821563 40 + 75148670 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044746 40 + 4244037 G-GACAGATCCCTAGCTTTCACTCACCTTTACCTCAAGATC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072897 40 + 4569836 G-GGCAGATCCCTACCTTTCACTCACCTTTACCTCAAGACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042217 40 - 159171411 G-GGTAGATCCTTACCTTTCACTCACCTTTACCTGAAGACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764573 40 + 3513951 G-GGCAGATCCTTACCTTTCACTTACCTTTACCTGAAGACC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814039 40 + 1920343 G-GGCAGATCCTTACCTTTCACTCACCTTTACCTGAAGACC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925304 40 - 7032639 G-GGCAGATCCTTACCTTTCACTCACCTTTACCTGAAGACC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2934558 20 + 8555354 G-GGCAGATCCC-----------------TGCATATGG--- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22732751 24 + 28711273 G-GGAAAATCCC----------------TTACTTAAAGACT i otoGar3.GL873537 C 0 I 4 s canFam3.chr9 21350724 41 + 61074082 GAGGCAGATTCCTACCTTTGATTTGCCTTTAGCTGAAGATT i canFam3.chr9 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e micMur3.chr16 35850475 35 - 65901067 I e dasNov3.JH570468 332968 21197 - 852752 T a score=841460.000000 s hg38.chr17_GL383564v2_alt 20242 65 + 133151 ---------ATGGTCCTGGTATTTAAGACTTTTCACAACCTGGACTCAATGCAACTTTCCGG----GGCTTGGGGATA s panTro5.chr17 16214122 65 + 83181570 ---------ATGGTCCTGGTATTTAAGACTTTTCACAACCTGGACTCAATGCAACTTTCCGG----GGCTTGGGGATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121479 65 + 83442489 ---------ATGGTCCTGGTATTTAAGACTTTTCACAACCTGGACTCAATGCAACTTTCCGG----GGCTTGGGGATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956564 65 + 4267968 ---------ATGGTCCTGGTATTCAAGACTTTTCACAACCTGGACTCAATGCAACTTTCCAG----GGCTTGGGGATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1934919 65 - 2193130 ---------ATGGTCCTGGTATTCAAGGCTTTTCACAACCTGGAGTCAATGCAACTTTCCAG----GGCTTGGGGATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009264 65 - 77216781 ---------ATGGTCCTGGCATTCAAGGCTTTTCATAACCTGGACTCAATGCAACTTTCCAG----GGCTTGGGGATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921864 65 - 80997621 ---------ATGGTCCTGGCATTCAAGGCTTTTCATAACCTGGACTCAATGCAACTTTCCAG----GGCTTGGGGATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978128 65 + 10377808 ---------ATGGTCCTGGCATTCAAGGCTTTTCATAACCTGGACTCAATGCAACTTTCCAG----GGCTTGGGGATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865256 65 - 8458610 ---------ATGGTCCTGGCATTCAAGGCTTTTCATAACCTGGACTCAATGCAACTTTCTAG----GGCTTAGGGATG i cerAty1.NW_012006043v1 C 0 I 31 s chlSab2.chr16 64821603 55 + 75148670 ---------ATGGTCCTGGCATTCAAGGCTTTTCATAACCTGGGCTCAGTGCAACTTTCCAG----GG---------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044786 65 + 4244037 ---------ATGGTCCTGGCATTCAAGGCTTTTCATAACCTGGACTCAATGCAACTTTCCAG----GGCTTGGGGATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2072937 65 + 4569836 ---------ATGGTCCTGACATTCAAGGCTTTTCATAACCTGGACTCAATGCAACTTTCCAG----GGCTTGGGGATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042257 64 - 159171411 ---------ATGGTTCTGGCATTCAAGGCTTTTCACAACCTGGTCTCAATGCAACTTTTCA-----GGCTTGAGAATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764613 64 + 3513951 ---------ATGGTTCTAACATTCAAGGCTTTTCACAACCTGGTCTCAATGTAACTTTTCA-----GGCTTGAGAATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814079 64 + 1920343 ---------ATGGTTCTGGCATTCAAGGCTTTTCACAACCTGGTCTCAATGCAACTTTTCA-----GGCTTGAGAATA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925344 64 - 7032639 ---------ATGGTTCTGGCATTCAAGGCTTTTCACAACCTGGTCTCAATGCAACTTTTCA-----GGCTTGAGAATA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850510 64 - 65901067 ---------ATGGTCCTGGCATTCAAGGCTTCCCAGAACCTGGACTGAACACAACTTTCCAG----TGCTCGCGGAC- i micMur3.chr16 I 35 C 0 s proCoq1.NW_012135969v1 2934578 64 + 8555354 ---------ATGGTCTTGGCATTCAAGGCTTCCCAGAACCTGGACTAAACACAACTTTCCAG----GGCTCGCGGAC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22732779 64 + 28711273 ---------TCAGTCCTGGCATTCCAGGCTTCCCATAACCGGGGGTGAATGCAACTTTCCAG----AGCTTGGGGAC- i otoGar3.GL873537 I 4 C 0 s canFam3.chr9 21350765 72 + 61074082 ATATATGGGATGGCCCTGGCATTTAAGGCTTCCCACAACCTGGACTAAATGCAACTTTCCAGCACTGGCATG------ i canFam3.chr9 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e dasNov3.JH570468 332968 21197 - 852752 T a score=233893.000000 s hg38.chr17_GL383564v2_alt 20307 20 + 133151 ATGTCTCCATTATAAATACC s panTro5.chr17 16214187 20 + 83181570 ATGTCTCCATTATAAATACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121544 20 + 83442489 ATGTCTCCATTATAAATACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956629 20 + 4267968 ATGTCTCCATTATAAATACC i gorGor5.CYUI01015385v1 C 0 I 29 s nomLeu3.chrUn_GL397460_1 1934984 20 - 2193130 ATGTCTCCATTATAAATACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009329 20 - 77216781 ATGTCTCCATTATAAACACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921929 20 - 80997621 ATGTCTCCATTATAAACACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978193 20 + 10377808 ATGTCTCCATTATAAACACC i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64821658 16 + 75148670 ----CTCCATTATAAACACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044851 20 + 4244037 ATGTCTCCATTATAAACACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073002 20 + 4569836 ATGTCTCCATTATAAACACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042321 20 - 159171411 ATGTCTCCATTATAAGCACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764677 20 + 3513951 ATGTCTCCATTAGAAGCATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814143 20 + 1920343 ATGTCTCCATTATAAGCATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925408 20 - 7032639 ACGTCTCCATTATAAGCACC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850574 20 - 65901067 ATGTCTCCATCACAAGCGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2934642 20 + 8555354 ACGTCTCCATCACAAGTGCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22732843 18 + 28711273 --GTCTCCATTCTATGGACC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21350837 19 + 61074082 -TGTCTTCATTATAAGGGCC i canFam3.chr9 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e dasNov3.JH570468 332968 21197 - 852752 T e cerAty1.NW_012006043v1 1865321 31 - 8458610 I a score=2234037.000000 s hg38.chr17_GL383564v2_alt 20327 158 + 133151 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTATGAGAGAAGCTCATTCC-CC-AACCCTTTATAAAAAATATCATTCAAAACATATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCCGGTCTCTCAGTGA s panTro5.chr17 16214207 158 + 83181570 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTATGAGAGAAGCTCATTCC-CC-AACCCTTTATAAAAAATATCATTCAAAACATATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCCGGTCTCTCAGTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121564 158 + 83442489 AACACAACTAGACTATTTTCCATTTACCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTATGAGAGAAGCTCATTCC-CC-AACCCTTTATAAAAAATATCATTCAAAACATATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCCGGTCTCTCAGTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956678 158 + 4267968 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTATGAGAGAAGCTCATTCC-CC-AACCCTTTATAAAAAATATCATTCAAAACATATTTGGAAAATCCCCTACTCCTTGAAGTCTTTTTCCGGTCTCTCAGTGA i gorGor5.CYUI01015385v1 I 29 C 0 s nomLeu3.chrUn_GL397460_1 1935004 158 - 2193130 AACACAACCAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTATGAGAGAAACTCACTCC-CC-AACCCTTTATAAAAAATATCATTCAAAACATATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCAGGTCTCTCAGTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009349 158 - 77216781 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTCTGAGAGAAACTCACTCC-CC-AACGCTTTATGGAAAATATAATTCAATACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27921949 158 - 80997621 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTCTGAGAGAAACTCACTCC-CC-AACGCTTTATGGAAAATATAATTCAATACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978213 158 + 10377808 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTCTGAGAGAAACTCACTCC-CC-AATGCTTTATGGAAAATATAATTCAATACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865352 158 - 8458610 GGCACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTCTGAGAGAAACTCACTCC-CC-AACGTTTTATGGAAAATATAATTCAATACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i cerAty1.NW_012006043v1 I 31 C 0 s chlSab2.chr16 64821674 158 + 75148670 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATTTTGTTCTCTCTGAGAGAAACTCACTCC-CC-AACGCTTTATGGAAAATATCATTCAATACAAATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2044871 158 + 4244037 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGGTTGTGTTTATTTTGTTCTCTCCGAGAGAAACTCACTCC-CC-AACGCTTTATGGAAAATATAATTCAATACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073022 158 + 4569836 AACACAACTAGACTATTTTCCATTTTCCAAA--TGTTTGATTGTGTTTATCTTGTTCTCTCTGAGAGAAACTCACTCC-CC-AACGCTTTATGGAAAATATCATTCAAAACACATTTGGAAAATTCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGCGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042341 158 - 159171411 AACGCAACTAGACTATTTTCTATTTTCCAAA--TGTTTGATTCTGTTTATCTTGTTTTCTATGAGAGAAACTCACTCC-CC-AACCCTTTATGGAAAATATCATTCAAAACACATTTGGAAAATCCTCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764697 158 + 3513951 AACACAACTAGACTATTTTCCATTTTCCGAA--TGTTTGATTCTGTTTATCTTGTTTTCTATGAGAGAAACTCACTCC-CC-AACCCTTTATGGAAAATATCATTCAAAACACATTTGGAAAATCCCCTACTCCATGAAGTCTTGTTCTGGTCTCTCAGTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814163 158 + 1920343 AGAGCAACTAGACTATTTTCCATTTTCGGAA--TGTTTGATTCTGTTTATTTTGTTTTCTGTGAGAGAAACTCACTCC-CC-AACCCTTTATGGAAAATATCATTCAAAACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925428 158 - 7032639 AACGCAACTAGACTATTTTCCATTTTCCGAA--TGTTTGATTCTGTTTATCTTGTTTTCTATGAGAGAAACTCACTCC-CC-AACTCTTTATGGAAAATATCATTCAAAACACATTTGGAAAATCCCCTACTCCATGAAGTCTTTTTCTGGTCTCTCAGTGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850594 161 - 65901067 AACACAGCTAAACTATTTTCCATTTCCCAAACATGTTTGATTGTGTTTATTTGGTTCTCCAGGAGAGGCATTCTCTCC-CCTAACCTCTTATGGAAAATATCATTCAGGACACATTTTAAAAATCCCCTACTCCGTGGAGTCCTTTTCTGGTCTATCAGTGT i micMur3.chr16 C 0 I 1 s proCoq1.NW_012135969v1 2934662 161 + 8555354 AACACAGCTAGACTATTTTCCATTTTCCAAACGTGTTTGATTCTGTTCATTTTGTTCTCCAGGAGAGGCATTCTCTCC-CCTAACCTCTTACGGAAAACATCCTTCAAGACACATTTTAAAAACCCCCTACTCCATGAAGTCCTTTTCTCGCCTATCAGTGC i proCoq1.NW_012135969v1 C 0 I 47 s otoGar3.GL873537 22732861 160 + 28711273 TACACAGCTGGCCTATTTTCCATTTCCCAAACATGTTTGGTTCTGTTCATTTTGTTCTGCCTGAGATGCCCTTTCTCC-CCTAACCTCTTATGGAAAAGGCCATTTAAAACACATTAAAAAAATCCCCCACTCCGTGCAATTTTTTTCTGGTCTCTCAGTG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21350856 161 + 61074082 AGCACAGCTATAATATTTTCCATTTTCCAGACACATTTGATTCTGTTAATTTTGGTCTCTATGAGAGATGGTGTCTCCTCC-AGTCCCTTCTTGAAACCATCATTCAAAACACATATTAAATGCTCCCTGCTCTATGAAGTCTTTCTCTGGTCACTCAGTGA i canFam3.chr9 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e dasNov3.JH570468 332968 21197 - 852752 T a score=405146.000000 s hg38.chr17_GL383564v2_alt 20485 50 + 133151 GCTCTCTTCCACCTCGAAAT-CTTTGCAGCT------------------GTCTTTTAAAAAAAAAAAAA s panTro5.chr17 16214365 47 + 83181570 GCTCTCTTCCACCTCGAAAT-CTTTGCAGCT------------------CTCTTTTTTAAAAAAAA--- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121722 47 + 83442489 GCTCTCTTCCACCTCGAAAT-CTTTGCAGCT------------------CTCTTTTTTAAAAAAAA--- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956836 47 + 4267968 GCTCTCTTCCACCTCGAAAT-CTTTGCAGCT------------------CTCTTTTTTTAAAAAAA--- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1935162 46 - 2193130 GCTCTCTTCCACCTCGAAAT-CTTTGCAGCT------------------TTCTTTTTTAAAAAAA---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009507 43 - 77216781 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTTTTT----AAAAAAA--- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922107 43 - 80997621 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTTTTT----AAAAAAA--- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978371 43 + 10377808 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTTTTT----AAAAAAA--- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865510 45 - 8458610 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTCTTTTA--AAAAAAA--- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821832 45 + 75148670 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTCTTTTT--AAAAAAA--- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045029 45 + 4244037 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTCTTTTT--AAAAAAA--- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073180 45 + 4569836 GCTCTCTTCCACCTCAAAAT-CTTTGCAGCT------------------CTCTTTTT--AAAAAAA--- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042499 41 - 159171411 GCTCTCTTCCATCTTGAAAT-CTTTGCAGCT------------------CTCT------TAAAAAC--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764855 41 + 3513951 GCTTTCTTCCACCTTGAAAT-CTTTGCAGCT------------------CTCT------TAAAAAA--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814321 41 + 1920343 GCTCTCTTCCACCTTGAAAT-CTTTGCAGCT------------------CTCT------TAAAAAA--- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925586 41 - 7032639 GCTCTCTTCCACCTTGAAAT-CTTTGCAGCT------------------CTCT------TAAAAAA--- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850756 50 - 65901067 GTTTTCCTCTACCTTGAAAT-CTTCACAGCT------------CTCTCTCTCTTTCT--AAAAAA---- i micMur3.chr16 I 1 C 0 s otoGar3.GL873537 22733021 48 + 28711273 -TTTTCTCCTACCTAGAAATAAATCACAGCT------------CAATCGCTCTTTTT--TAAA------ i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21351017 58 + 61074082 GCTCTCTT----CTTAAGAT-CTATGTAGCttttctttcttttttttttcttttttttttAAG------ i canFam3.chr9 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e proCoq1.NW_012135969v1 2934823 47 + 8555354 I e dasNov3.JH570468 332968 21197 - 852752 T a score=5506970.000000 s hg38.chr17_GL383564v2_alt 20535 410 + 133151 TACTTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTTTTATCTTTCTTATTAAAATCTAAAATCTCCTTCTTACAA-GACAGCATAGATGTGCGTTTGTTCCGCACTGGGCACTCTACAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTTCAATGTGCC-----TGATTGACTAATATTTTAGGTTTTGCTGCATTGGGAACATTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGACATTTTAGGAGCCTTTAGTTCTTGATTATTTCATAGACATAAGCTGACAGAAGGGGAAAGATTTCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGAA------AGAGGTTAG s panTro5.chr17 16214412 410 + 83181570 TACTTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTTTCTTATTAAAATCTAAAATCTCCTTCTTACAA-GACAGCCTAGATGTGCGTTTGTTCCGCACTGGGCACTCTACAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTTCAATGTGCC-----TGATTGACTAATATTTTAGGTTTTGCTGCATTGGGAACATTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGACATTTTAGGAGCCTTTAGTTCTTGATTATTTCATAGACATAAGCTGACAGAAGGGGAAAGATTTCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGAA------AGAGGTTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16121769 410 + 83442489 TACTTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTTTCTTATTAAAATCTAAAATCTCCTTCTTACAA-GACAGCCTAGATGTGCGTTTGTTCCGCACTGGGCACTCTACAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTTCAATGTGCC-----TGATTGACTAATATTTTAGGTTTTGCTGCATTGGGAACATTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGACATTTTAGGAGCCTTTAGTTCTTGATTATTTCATAGACATAAGCTGACAGAAGGGGAAAGATTTCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGAA------AGAGGTTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3956883 410 + 4267968 TACTTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTGTTATCTCTCTTATTAAAATCTAAAATCTCCTTCTTACAA-GAAAGCCTAGATGTGCGTTTGTTCCGCACTGGGCACTCTACAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTTCAATGTGCC-----TGATTGACTAATATTTTAGGTTTTGCTGCATTGGGAACATTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGACATTTTAGGAGCCTTTAGTTCTTGATTATTTCATAGACATAAGCTGACAGAAGGGGAAAAATTTCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGAACCTGCAGTGATGGGAAGAA------AGAGGTTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1935208 407 - 2193130 TACCTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTAGAATCTAAAATCTCCTTCTTACAA-GACAGCCTAGATGT--GTTTGTTTTGCACTGGGCATTCTACAA--ATATCTATCAAAACAAGCAAATCATGATT--TTTCCCTTTCTTCAATGTGCC-----TGATTGACTAATATTTTAGGTTTTGCTGCAGTGGGAACATTCAGAGGTAGGAAAAGAATG-GGGAGTGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTCATAGACATAAGCTGACAGAAGGGGAAAGATTTCATAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGAA------AGAGGTTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30009550 409 - 77216781 TACCTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCCACACTGGGCACTCTATAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTGCAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTGCAGTGGGAACAGTCAGAGGTAGGAAAAGAATGTGGGAGCGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTCATACACATAAGCTGACAGAA-GGGAAAGATTCCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCCATTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGGTTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922150 409 - 80997621 TACCTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCCACACTGGGCACTCTATAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTGCAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTGCAGTGGGAACAGTCAGAGGTAAGAAAAGAATGTGGGAGCGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTCATACACATAAGCTGACAGAA-GGGAAAGATTCCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCCATTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGGTTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978414 409 + 10377808 TACCTCCTTTTACTATCTTCATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCCACACTGGGCACTCTATAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTGCAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTGCAGTGGGAACAGTCAGAGGTAGGAAAAGAATGTGGGAGCGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTCATACACATAAGCTGACAGAA-GGGAAAGATTCCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCCGTTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGGTTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865555 410 - 8458610 TACCTCCTTTTACTGTCTTTATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCCACACTGGGCACTCTATAA--ATAACTATCAAAACAAACAAATCATGATT--TTTCCCTTTCTGCAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTGCAGTGGGAACAGTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTCATACACATAAGCTGACAGAAGGGGAAAGATTCCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGGTTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64821877 410 + 75148670 TACCTCCTTTTACTGTCTTCTTAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAACCTAGATGTGTGTTTGTCCCACACTAGGCACTCTATAA--ATATCTACCAAAACAAATAAATCATGATT--TTTCCCTTTCTGCAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTGCAGTGGGAACAGTCAGAGGTAGGAAAAGAATGTGGGAGTGTGAGAGACTTGCAGGAAAGTTTAGGAGTCTTTAGTTCTTGATTATTTCATACACATAAGCTGACAGAAGGGGAAAGATTCCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGGTTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045074 409 + 4244037 TACCTCCTTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCCACACTGGGCACTCTATAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCTCTTTCTGAAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTGCAGTGGGAACAGTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTAGATTATTTCATACACATAAGCTGACAGAA-GGGAAAGATTCCACAGCCACAGAAAGTGGACTGCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGGTTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073225 410 + 4569836 CACCTCCCTTTACTGTCTTCATAATATC------AAGATCATTTACTTTCTTATCTCTCTTATTGAAATCTAAAATCCCCTTCTTACAA-GACAgcctagatgtgtgtttgtcccacactgggcactccataa--atatctatcaaaacaaacaaatCATGATT--TTCCCCTTTCTGCAATGTGCC-----TGATTGACTGATATTTTAGGTTTTGCTACAGTGGAAACAGTCAGAGGTAGGAAAAGAATGTGGGAGTGAGAGAGACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTCATACACATAAGCTGATAGAAGGGGAAAGATTCCACAGCCACAGAAAGTGGGCTTCTTGAAGAAGACCTTGTTTTCTCTGTTTTCCAGGACCCTGAAGTGATGGGAAGCA------AGAGGTTAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042540 408 - 159171411 TACCTCCTTTTACCATCTTCATAATATC------AAGATTATTTCCTTTCTTTTCTTTCTTATTAAAACCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCTGCACTGAGCACTCTACAA--ATATCTATCAAAACAAACAAATCATGATT--TTCCCCTTTCCTCAGTGTACC-----TGATTGACTAATGTTTTATGTTTTGCTGCAATGGGAACATTCAGAGGTAGAAAAAGAATCTGGGAGTGAGAGAAACTTGCCGGGAATTTTAGGAGTCTTTAGTTCTTGATTATTTTATAGACATAAGCTGACAGGAGGGGAAAGATTTCACAGCCACAGAAAGTGTGCTGCTTGGAGAAGACCCTGTTTTTT--GTTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGCTTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1764896 409 + 3513951 TACCTCCTTTTACTGTCTTCATAATATC------AAGATCAGTTCCTTTCTTTTCTTTCTTATTAAAACCTAAAATCCCCTTCTTACAA-GACAGCTTGGATGCGTGTTTGTCCTGCACTGGGCACTCTATAAATATATCTATCAAAACAAACAAGTCACGATT--TTTCCCTTTTCTCAGTGTACC-----TGATTGACTAATAGTTTATGTTTTGCTGCAATGGGAACATTCAGAGGTAGAAAAAGAATCGGGGAGTGAGAGAAACTTGCAGAAAATTTTAGGAGTCTTTAGTTCTTGATTATTTTATAGACATAAGCTGACAGAAGGGGAAAGATTTCACAGCCACAGGAAGCTTGCTGCTT-GAAAAGACCCTGATTTCT--GTTTTCCAGGACCCTGCAGTGATGGGAAGCA------AGAGCTTAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814362 408 + 1920343 TACCTCCATTTACTGTCTTCATAATATC------AAGATCATTTCCTTTCTTTTCTTTCTTATTAAAACTTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTATGTTTGTCCTGCACTGGGCACTCTATAA--ATATCTATCAAAACAAACAAATCATAATT--TTTCCCTTTCCTCAGTGTACC-----TGATTGACTAACATTTTATATTTTGCTGCAATGGGAACATTCAGAGGTAGAAAAAGAATCTGGGAGTGAGGGAAACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATTTTATAGACATAAGCTGACAGAAGGGGAAAGATTTCACAGCCACAGAAAGTGTGCTGCTTGAAGAAGACCCTGTTTTTT--GTTTTCCAGGACCCTGCAGTAATGGGAAGCA------AGAGCTTAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6925627 408 - 7032639 TACCTCCTTTTACTGTCTTCATAATATC------AAGCTCATTTCCTTTCTTTTCTTTCTTATTAAAACCTAAAATCCCCTTCTTACAA-GACAGCCTAGATGTGTGTTTGTCCTGCACTGGGCACTCTATAA--ATATCTATCAAAACAAACAAATCATGATT--TTTCCCTTTCCTCAGTGTACC-----TGATTGACTAATATTTTATATTTTGCTGCAATGGGAACATCCAGAGGTAGAAAAAGAATCTGGGAGTGAGAGAAACTTGCAGGAAATTTTAGGAGTCTTTAGTTCTTGATTATCTTATAGACATAAGCTGACAGAAGGGGAAAGATTTCACAGCCATGGAAAGTGTGCTGCTTGAAGAAGACCCTGTCTTTT--GTTTTCCAGGACCCTGCGGTGATGGGAAGCA------AGAGCTTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35850806 412 - 65901067 TACCCTCTCTTATTGGCTTTATAATATT------TAGGTCACTTGCTTTCTTATCTCTCTTTTTAATATGTAAACCCCACCCCTCACGA-GGAGGTCTAGCTCCGTGTTTGTGCCACACTGGGCATTTCATAA--ATATCTACCGAAACAAATAAATCCTGATT--TTTCCCTTTCCTCCCTGTGCC-----TGATTGATTAATATTTTAGACTTTGCCGCAGTGGGAACATTTCGAGGTAGGAAAAGAATACAGGAGTGAGACATCTTTG-AGGAAATTTTAGGAGTCCCTGGTTCTTGATTGTTTCACAGACACAAGCTGACAGAAGGGGAAAGAAGTCACAGCCACAGAAGGTGGGCTGCGTGAAGAAGACCTCG---CTTCTGTTTTCTAGGACCCTGCAGTGACCGGAAGCATTGTGTATGAGTGAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2934870 411 + 8555354 TGCCCTCTCTTATTGCCTTTATAATATT------TAGGTCATTTACTTTCTTATCTCTCTTTTTAAAATCTAAACCCCACCCCTCACAA-GGAGGTCTAGCTCTGTGTTTGTCCCACACTGGCCATTCCTTAA--ATATCTATCGAAATAAATAAATCCTGGTT--TTCCCCTTTCCTCCCTGTGCC-----TAATTGACTAATATTTTAGACTTTGCCACAATGGGAACATTTCGAGGTAGGAAAAGAATACAGGAGTGAGAGATCTTTG-AGGAAATTTTAGGAGTCTTTCGTTCTTGATTATTTCACAGACATAAGCTGACAGAAGGGGAAAGAATTCACAGCCACAGAAAGTGGGCTGCTTGAAGAAGACCTCA---TTTCTG-TTCCTAGGACCCTGCAGTGACGGGAAGCATCATGTATGGGTTAA i proCoq1.NW_012135969v1 I 47 C 0 s otoGar3.GL873537 22733069 418 + 28711273 TGCTCTTTCTTATTGCCTTTATAATATTGATCGATAGATGATTTACTTTCTTATCTCTCTTATTTAAATCTAAACCCTACTCCTCACAATAAAGGTCTAGCTCCCTGTTTGCCCCCCACCGGACGTTCCACAG--ATATCCACCAAGACAAATGAATGGGGACT--TTTCCCTTTCTTCCAAGCGCC---------TGACTCATAATTTACACTTTGCTACAGTGGAAACATTTTGAGGTAGGAAAAGAAGATAGGAATGGGAGATAGTTG-AGGAAATTTTAAGAATCTCTAATTTGTGATTCTTTCACAGACATAAGCTGAGAGAACGAGAAAGCAATCACAGCCACAGAAAGTGGGCTGCTGGAAGAAGACCTCAGTTTCTCTGTTTTTTAGGACCCTGCAGTGATGGGAAGCATCGTGGACCGATTAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21351075 396 + 61074082 CACCCTCTCTTATTGCCTTTGTAATA--------AAGGTCATTTATTTTCTTATTCCTCTTACTGAAATCTAA---CCCCCTCCCTCCA-GGCAGGCTAAGC-----TATATCTCACAGTAGAGACTCCATAC--ACATCTGCTGAAACAAACTAATTATAATTTGTTTTGCTTTTTTCAATGTGCCGTGCCTGACTGATCACTATTTTAGAC--TGCCATGATGGGAATGTTTGGAGGCAGGAAAAGAATACTAGAGTTGGAAAGATGTTGAGGGAATTTTACGTGTCTCTGGTTCTCAATTATCTCACAGATATAAACTGGCAGAG-GGTAAAGAGACTTAAACCACAGAATGTGGGCCAC--------------ATTTTCTCTGTGTCCTAGGACCCTAGAACGAGGAGAAGTATCCTGTGTGGGTGAA i canFam3.chr9 C 0 C 0 e mm10.chr11 22023753 29644 - 122082543 T e dasNov3.JH570468 332968 21197 - 852752 T a score=1641767.000000 s hg38.chr17_GL383564v2_alt 20945 97 + 133151 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA s panTro5.chr17 16214822 97 + 83181570 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122179 97 + 83442489 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957293 97 + 4267968 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1935615 97 - 2193130 GGCTTCTTTCATGAGCTTATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGGAA i nomLeu3.chrUn_GL397460_1 C 0 T 12479 s rheMac8.chr16 30009959 97 - 77216781 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922559 97 - 80997621 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978823 97 + 10377808 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1865965 97 - 8458610 GGCCTCTTTCATGAGCTCATTAACTCTTTATATGAAGCAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822287 97 + 75148670 GGCCTCTTTCATAAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045483 97 + 4244037 GGCCTCTTTCATGAGCTCATTAACTCTTTATATGAAGCAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073635 97 + 4569836 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46042948 97 - 159171411 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAACCCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765305 97 + 3513951 GGCCTCTTTCATAAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGCGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814770 97 + 1920343 GGCCTCTTTTATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926035 97 - 7032639 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAACCACTGACTAATAGAGTGATT-------GTATAACAATTGACATAAATATT----AATGAGGAAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851218 97 - 65901067 GGCCTCTTTCACGAGCTCATTAACTCTTTATAGGAAACAAAAATCACTGACTAATAGAGCGATT-------GTATAGCAATAGACATAAATATT----CATGAGGAAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935281 97 + 8555354 GGCCTCTTTCATGAGCTCATTAACTCTTTATAGGAAACAAAAATCACTGACTAATAGAGCGATT-------GTATAGCAATAGACATAAATATT----CATGAGGAAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733487 97 + 28711273 GGGCTCTTTCATGAGCTCATTAACTTTTTATAGGAAACAAAAATCACTGACTAATAGGGCGATT-------GTACAACGACAGACATAAATATT----AATGAGGAAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21994109 104 - 122082543 GGCCTTTTTTATGAGGAAAGGAACTCCTTATTGGAAACCAAA-TTACAAATTAATTATCAGTTTCCTCTGGGGCCAAGTATAAACATCAACACTCCCCCATGAGA--- i mm10.chr11 T 29644 C 0 s canFam3.chr9 21351471 97 + 61074082 GGCCTCTTTCATGAGCTCATTAACTCTTTATATGAGACAAAAATCACTGACTAATAGAGTGATT-------GTATAAGAATCAACATAAATATT----AATGAGGAAA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 332968 21197 - 852752 T a score=2099686.000000 s hg38.chr17_GL383564v2_alt 21042 161 + 133151 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAGGTCTACAGGAGAAGGAAGATTTTGGTGTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTTGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGGGCAGGTTT s panTro5.chr17 16214919 161 + 83181570 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAGGTCTACAGGAGAAGGAAGATTTTGGTGTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTTGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGGGCAGGTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122276 161 + 83442489 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAGGTCTACAGGAGAAGGAAGATTTTGGTGTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTTGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGGGCAGGTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957390 161 + 4267968 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAGGTCTACAGGAGAAGGAAGATTTTGGTGTCAGGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTTGCCTTTTAGCCCCATGACTTCTGACCACTGCAGTTCC--CTCCTCAGCGGGCAGGTTT i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30010056 161 - 77216781 ATGCCAGTTTTCTTGGACCAACACCCAC---TA-AGCCTTATATAAGGTCTTCAGGAGGAGGAAGATTTTGGTTTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGAGCAGGTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922656 161 - 80997621 ATGCCAGTTTTCTTGGACCAACACCCAC---TA-AGCCTTATATAAGGTCTTCAGGAGGAGGAAGATTTTGGTTTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGAGCAGGTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1978920 161 + 10377808 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGCCTTATATAAGGTCTTCAGGAGGAGGAAGATTTTGGTTTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGAGCAGGTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866062 161 - 8458610 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAGGTCTTCAGGAGGAGGAAGATTTTGGTTTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACCATGACTTCTGACCATTGCAGTGCC--CTCCTCAGCGAGCAGGTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822384 161 + 75148670 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAAGTCTTCAGGAGGAGGAAGATTTTGGTTTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACTATGACTTCTGACCATTGCAGTTCC--CTCCCCAGCGAGCAGGTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045580 161 + 4244037 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAGGTCTTCAGGAGGAGGAAGATTTTGGTTTCAGGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACCATGACTTCTGACCATTGCAGTTCC--CTCCTCGGCGAGCAGGTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073732 161 + 4569836 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCTTATATAAAATCTTCAGGAGGAGGAAGATTTTGGTTTCAAGCAGATCC----AACTGTGGGCAAAGCAGGA--TCTCGCCTTTTAGCACCATGACTTCCGACCATTGCAGTTCC--CTCCTCAGCGAGCAGGTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043045 161 - 159171411 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCCTATATAAGGTGTACGGGAGAAGGAAGATTTTGGTTTCCAGCACACCC----AACTGTGGGCAAAGCAGGA--TCTCACCTATTAGCACCGTGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGGGCAGGTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765402 160 + 3513951 ATGCCAGTTTTCTGGCACCAACACCCAC---TA-AGGCCTATATAAGGTGTACTGGAGAAGGAAG-TTTTGGTTTCCAGCACATCC----AACTGTGGGCAAAGCAGGA--TCTCACCGTTTAGCACCGTGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGGTCGAGTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1814867 161 + 1920343 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCCTATATAAGGTGTACAGGAGAAGGAAGATTTTGGTTTCCAGCACACCC----AACTGTGGGCAAAGCAGGA--TCTCACCTTTTAGCACTGTGACTTCTGACCATTGCAGTTCC--CTCCTCAGCAGTCGGGTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926132 161 - 7032639 ATGCCAGTTTTCTTGCACCAACACCCAC---TA-AGGCCTATATAAGGTGTACGGGAGAAGGAAGATTTTGGTTTCCAGCACACCC----AACTGTGGGCAAAGCAGGA--TCTCACCTTTTAGCACTGTGACTTCTGACCATTGCAGTTCC--CTCCTCAGCGGGTAGGTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851315 163 - 65901067 ATGCCAGTTTTCTTGCATCAACACCCAC---TA-AAGCCTATATAAGGTCTACAGGAGAAGGAAGGTTTTGGCTTCTAGCAAATTC----AACTGTGGGCAAAGCAGGAGTCATTGCCTCTTAGCGCCATGACTTCTGACCGCTGCGGCTCC--CTCCGGGCTGGGAAGGTTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935378 163 + 8555354 ACACCAGTTTTCTTGCATCAACACCCAC---TA-AAGCCTATATAAGGTCTGCAGGAGAAGGAAGGTTTTGGCTTCTAGCAAATTC----AACTGTGGGCAAAGCAGGAGTTATTGCCTGTTAGCGCCATGACTTCTGACCGCTGCGGCTCC--CTCCTGGTTGGGCAGGTTC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733584 162 + 28711273 GTGACGATTTTCTTGCATCAACACCCAC---TA-AGGTCTATATAAGGTCTACAGGAGAAGGAAGGGTTTGGCTTCAAGGAAATCC----AACCATGGGCAAAGCAGGA-CTATAGACCTCTAGTATCATGACTTCAGACCGCTGCAGCTCC--CTCCACAGTGGGGGGCTTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21994213 148 - 122082543 ------ATACTTTAGTGCGAACCCCTTCACTTC-AAGAGTATAAAAAGGCCTGGGCAGGATGGAGTCTGTAG--------AGATCCAGGGAACTGCTGGGGGGAAAGGA--CTTC----CTTAGCA---TGCCATCCAGCTGCTGTGTCACCAACACCTCATC-AGCATCTCT i mm10.chr11 C 0 I 1 s canFam3.chr9 21351568 162 + 61074082 ATGCCTGTTTTCTTGCACCAACACCCAC---TACAGGCATATATAAGGTCTGGAAGAGAAGGAAGGCTTCGACTTCAAGCAAATCC----AACTGTGGGCAAAGCACAC--ATCTGGCTTTCAGCCCCATGACTTCTCATCATTGCAGTTCT--CTCCTCAGTAAACAGGTTT i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 332968 21197 - 852752 T e nomLeu3.chrUn_GL397460_1 1935712 12479 - 2193130 T a score=229863.000000 s hg38.chr17_GL383564v2_alt 21203 15 + 133151 CAGAGGCCAACGCTG s panTro5.chr17 16215080 15 + 83181570 CAGAGGCCAACGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122437 15 + 83442489 CAGAGGCCAACGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957551 15 + 4267968 CAGAGGCCAACGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923233 15 - 2193130 CAGAGGCCAATGCTG i nomLeu3.chrUn_GL397460_1 T 12479 C 0 s rheMac8.chr16 30010217 15 - 77216781 CAGAGGCCAAAGCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922817 15 - 80997621 CAGAGGCCAACGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979081 15 + 10377808 CAGAGGCCAACGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866223 15 - 8458610 CAGAGGCCAACGCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822545 15 + 75148670 CAGAGGCCAACGCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045741 15 + 4244037 CAGAGGCCAACGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073893 15 + 4569836 CAGAGGCCAACGCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043206 15 - 159171411 CAGAGGTCAAGGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765562 15 + 3513951 CAGAGGTCAAGGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815028 15 + 1920343 CAGAGGTCAAGGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926293 15 - 7032639 CAGAGGTCAAGGCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851478 15 - 65901067 CTGAGGCCAAGGCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935541 15 + 8555354 CTGAAGCCAAGGCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733746 15 + 28711273 CTGAGGCCAAGGCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21994362 15 - 122082543 AAGAGCTCGGCACGG i mm10.chr11 I 1 C 0 s canFam3.chr9 21351730 15 + 61074082 CAGAGGCCAAGGCTG i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 332968 21197 - 852752 T a score=444038.000000 s hg38.chr17_GL383564v2_alt 21218 28 + 133151 CCTCTCTGTGCCTCTTGGCTAATGTGGC s panTro5.chr17 16215095 28 + 83181570 CCTCTCTGTGCCTCTTGGCTAATGTGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122452 28 + 83442489 CCTCTCTGTGCCTCTTGGCTAATGTGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957566 28 + 4267968 CCTCTCTGTGCCTCTTGGCTAATGTGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1923248 28 - 2193130 CCTCCATGTGCCTCTTGGCCAACGTGGC i nomLeu3.chrUn_GL397460_1 C 0 I 13711 s rheMac8.chr16 30010232 28 - 77216781 CCTCCCTGTGCCTCTTGGCTAATGTGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922832 28 - 80997621 CCTCCCTGTGCCTCTTGGCTAATGTGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979096 28 + 10377808 CCTCCCTGTGCCTCTTGGCTAATGTGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866238 28 - 8458610 CCTCCCTGTGCCTCTTGGCTAATGTGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822560 28 + 75148670 CCTCCCTGTGCCTCTTGGCTAACGTGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045756 28 + 4244037 CCTCCCTGTGCCTCTTGGCTAATGCGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073908 28 + 4569836 CCTCCCTGTGCCTCTTGGCTAATGTGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043221 28 - 159171411 CCTCCCTGTGCCACTTGGCTAATGTGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765577 28 + 3513951 CCTCACTGTGCTACTTGGCTAATGTGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815043 28 + 1920343 CCTCACTGTGCCACTTAGCTAATGTGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926308 28 - 7032639 CCTCCCTGTGCCACTTGGCTAATGTGGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851493 28 - 65901067 CTTCCCTGTGCCTCTTGGCCAACCTGGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935556 28 + 8555354 CCTCCCTGTGCCTCTCGGCCAACCTGGC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733761 28 + 28711273 CTTCCCTGTGCCTCTTGGCCAATGCAGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21994377 22 - 122082543 CCTTCCTCCGTCTGTT--CCAGTA---- i mm10.chr11 C 0 C 0 s canFam3.chr9 21351745 28 + 61074082 CATCCCTGCGCTTGTCAGCCACCGTGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311771 28 - 852752 CCTCCCTGTGCCTCTTGGCCACCTAGGC i dasNov3.JH570468 T 21197 C 0 a score=233401.000000 s hg38.chr17_GL383564v2_alt 21246 14 + 133151 ACATGCCAATCGAG s panTro5.chr17 16215123 14 + 83181570 ACATGCCAATCGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122480 14 + 83442489 ACATGCCAATCGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957594 14 + 4267968 ACATGCCAATCGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1936987 14 - 2193130 ACATGCCAACCGAG i nomLeu3.chrUn_GL397460_1 I 13711 C 0 s rheMac8.chr16 30010260 14 - 77216781 ACATGCCAACCAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922860 14 - 80997621 ACATGCCAACCAAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979124 14 + 10377808 ACATGCCAACCAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866266 14 - 8458610 ACATGCCAACCGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822588 14 + 75148670 ACATGCCAACCGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045784 14 + 4244037 ACATGCCAACCGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073936 14 + 4569836 ATATGCCAACCGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043249 14 - 159171411 ACACGCCAACCGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765605 14 + 3513951 ACACGCCAGCCGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815071 14 + 1920343 ACATGCCAACTGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926336 14 - 7032639 ACACGCCAACCGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851521 14 - 65901067 ACACGCCAACCGAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935584 14 + 8555354 ACACGCCAACCGAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733789 14 + 28711273 GCACGCTAACCGCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21994399 14 - 122082543 ACATGGGCAGCAGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21351773 14 + 61074082 ACATGCCAACCGAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 311799 14 - 852752 ACATGCCAACCAAG i dasNov3.JH570468 C 0 T 58940 a score=899522.000000 s hg38.chr17_GL383564v2_alt 21260 60 + 133151 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCTCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA s panTro5.chr17 16215137 60 + 83181570 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCTCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122494 60 + 83442489 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCTCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957608 60 + 4267968 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCTCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937001 60 - 2193130 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010274 60 - 77216781 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922874 60 - 80997621 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979138 60 + 10377808 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866280 60 - 8458610 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822602 60 + 75148670 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCT-CCGACCTGCCACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045798 60 + 4244037 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2073950 60 + 4569836 TCCG---TGTG---GGGTCGACTCCCCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCAACCTGCCACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043263 66 - 159171411 TCCG---CGTG---GGGTCGACCCCCCTGGGCTGCCCCAG-------CCTCTGTCTGCCCACCCAC-CCCACCTTTCACA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765619 66 + 3513951 TCCG---TGTG---GGGTCAACCCCCCTGGGTGGCCCCAG-------CCTCTGTCTGTCACCCCCT-TCCACCTTTCACA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815085 61 + 1920343 TCTG---CGTG---GGGTCGACCCCCCTGGGCTGCCCCAG-------CCTCTGTCTG-----CCCC-CCCACCTTTCACA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926350 61 - 7032639 TCCA---CGTG---GGGTCGACCCCCCTGGGCTGCCCCAG-------CCTCTGTCTG-----CCCC-CCCACCTTCCACA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851535 60 - 65901067 TGCG---CGTA---GGGTCCACCCCTCTGGGCCGCCCCAG-------CCTCTGTCTG------CCC-CCCACCTGCCAGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935598 60 + 8555354 TGCG---TGTG---GGGTCCACCCCTCTGGGCCGACCCAG-------CCTCTGCCTG------CCC-CCCACCTGCCACG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733803 60 + 28711273 TCCG---TGTG---GGGTCCACTCCCCTGGGCCGCCCCAG-------CCTCTGCCTG------CCC-CCCAGCTGCCATG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21994413 73 - 122082543 TCCGAGCTGTGCCTGGGTTATGTCTGCC-AGCCGCTGCAGTGCATGCCCTCTGTCTG------CATGCCGACCACCTACA i mm10.chr11 C 0 T 17342 s canFam3.chr9 21351787 60 + 61074082 TGCG---TGTG---GGGGCAACCCCTCTGGGCCAACCCAG-------CCTCTGTATG------CCC-CACAGCTGCCACA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 311813 58940 - 852752 T a score=401473.000000 s hg38.chr17_GL383564v2_alt 21320 25 + 133151 CCACTTGTCCCTTGCCAGGGACCTG s panTro5.chr17 16215197 25 + 83181570 CCACTTGTCCCTTGCCAGGGACCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122554 25 + 83442489 CCACTTGTCCCTTGCCAGGGACCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957668 25 + 4267968 CCGCTTGTCCCTTGCCAGGGACCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937061 25 - 2193130 CCGCTTGTCCCTTGCCAGGGACCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010334 25 - 77216781 CCGCTTGTCCCTTGCCAGGGACCCG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922934 25 - 80997621 CCGCTTGTCCCTTGCCAGGGACCCG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979198 25 + 10377808 CCGCTTGTCCCTTGCCAGGGACCCG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866340 25 - 8458610 CCGCTTGTCCCTTGCCAGGGACCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822662 25 + 75148670 ATGCTTGTCCCTTGCCAGGGAGCCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045858 25 + 4244037 CCGCTTGTCCCTTGCCAGGGACCCG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074010 25 + 4569836 CCGCCTGTCCCTTGCCAGGGACCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043329 25 - 159171411 CTGCTTGTCCCTTCCCAGGGAACTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765685 25 + 3513951 CTGCTTGTCCCTTGCCAGGGACCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815146 25 + 1920343 CTGCTTGTCCCTTGCCAGGGACCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926411 25 - 7032639 CTGCTTGTCCCTTGCCAGGGACCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851595 25 - 65901067 CTGCTTGTGCCTTGCCGGGGACCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935658 25 + 8555354 CTGCTTGTCCCTTACCGGGGACCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733863 25 + 28711273 CTGCTTGTCCCTTGCCAGGGACCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21977144 18 - 122082543 CTACCTGTCCTCT----GGG---TG i mm10.chr11 T 17342 C 0 s canFam3.chr9 21351847 25 + 61074082 CTGCTTGCCCCTTGCCAGGGACCCG i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 311813 58940 - 852752 T a score=4164904.000000 s hg38.chr17_GL383564v2_alt 21345 248 + 133151 CCACATTCCTGGCAACATCGGAATCTGTGGGGCCTA---CCGCGAAAACACCCTGAACGGCCACGAGAAGGAGACCATGCAGTTCCTAAACGACCGCCTGGCCAACTACCTGGAGAAGGTGCGCCAGCTGGAGTGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCATGAGAGGAGCAAGTGCCACGAGTCCA-GCGTGTGCCGAAACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA s panTro5.chr17 16215222 248 + 83181570 CCACATTCCTGGCAACATCGGAATCTGTGGGGCCTA---CCGCGAAAACACCCTGAACGGCCACGAGAAGGAGACCATGCAGTTCCTAAACGACCGCCTGGCCAACTACCTGGAGAAGGTGCGCCAGCTGGAGTGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCATGAGAGGAGCAAGTGCCACGAGTCCA-GCGTGTGCCCAAACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122579 248 + 83442489 CCACATTCCTGGCAACATCGGAATCTGTGGGGCCTA---CCGCGAAAACACCCTGAACGGCCACGAGAAGGAGACCATGCAGTTCCTAAACGACCGCCTGGCCAACTACCTGGAGAAGGTGCGCCAGCTGGAGTGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCATGAGAGGAGCAAGTGCCACGAGTCCA-GCGTGTGCCCAAACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957693 248 + 4267968 CCACATTCCTGGCAACATCGGAATCTGTGGGGCCTA---CCGCGAAAACACCCTGAACGGCCACGAGAAGGAGACCATGCAGTTCCTAAACGACCGTCTGGCCAACTACCTGGAGAAGGTGCGCCAGCTGGAGTGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCATGAGAGGAGCAAGTGCCACGAGTCCA-GCGTGTGCCCAAACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937086 248 - 2193130 CCACATTCCTGGCAACATCGGAATCTGTGGGGCCTA---TGGTGAAAACACCCTGAACGGCAACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGCGAGAGGAGCAAGTGCCACGAGTCCA-GCATGTGCCCGAACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010359 248 - 77216781 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAATGGACACGAGAAGGAGACTATGCAGTTCCTGAATGACCGCCTGGCCAACTACCTGGAGAAAGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGAGAGGAGCAAGTGCCATGAGTCCA-GTGTGTGCCCGGACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGGAGGTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27922959 248 - 80997621 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAATGGACACGAGAAGGAGACTATGCAGTTCCTGAATGACCGCCTGGCCAACTACCTGGAGAAAGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGAGAGGAGCAAGTGCCATGAGTCCA-GTGTGTGCCCGGACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGGAGGTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979223 248 + 10377808 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAATGGACACGAGAAGGAGACTATGCAGTTCCTGAATGACCGCCTGGCCAACTACCTGGAGAAAGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGAGAGGAGCAAGTGCCATGAGTCCA-GTGTGTGCCCGGACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGGAGGTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866365 248 - 8458610 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAACGGCCACGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAAGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGACAGGAGCAAGTGCCATGAGTCCA-GCATGTGCCCGGACTACCAGTACTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822687 248 + 75148670 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAACGGCCACGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAAGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGAGAGGAGCAAGTGCCATGAGTCCA-GTGTGTGCCCGGACTACCAGTCCTACTTCTGCACCATCCAGGAGCTCCAGCAGAAGGTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2045883 248 + 4244037 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAACGGACACGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAAGTGCGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGACAGGAGCAAGTGCCATGAGTCCA-GTGTGTGCCCGGACTACCAGTCCTACTTCTGCACCATCGAGGAGCTCCAGCAGAAGGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074035 248 + 4569836 CCACATTCCTGGCAACATTGGAATCTGTGGGGCCTA---CAGCGAAAACACCCTGAACGGCCACGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAAGTACGCCAGCTGGAGCGGGACAATGCAGAACTGGAGACCAAACT------------------------------------CCGTGAGAGGAGCAAGTGCCATGAGTCCA-CTGTGTGCCCAGACTACCAGTCCTACTTCTGCACTATCCAGGAGCTCCAGCAGAAGGTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043354 241 - 159171411 CCACGTTCCTGGCAACATCGGAATCTGTGAGGC----------AAAAACACCCTGAATAGCCACGAGAAGGAGACCAGGCAGTTCCTGAATGACTGCCTGGCCAGCTACCTGGAGAAGGTGCACCAGCTGGAGTGGGAGAACGCAGAGCTGGAGACCAAACT------------------------------------CCGCGAGAGGAGCAAGCGCCACGAGTCCA-GTGTGTGCCCGGACTACCAGCCCTACTTCCGCACCATTGAGGAGCTCCAGCAGAAGGTAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765710 241 + 3513951 CCACGTTCCTGGCAACATCGGAATCTGTGGGGC----------AAAAACACCCTGAACAGCCACGAGAAGGAGACCATGCAGTCCCTGAATGACTGCCTGGCCAGCCACCTGGATAAGGTGTGCCAGCTGGAGTGGGAGAATGCGGAGCTGGAGACCAAACT------------------------------------CCCAGAGAGGAGCAAGTGCCACGAGTCCA-GCATGTGCCCGGACTACCAGCCCTGCTTCCGAACCCTCGAGGAGCTCCAGCAGAAGGTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815171 241 + 1920343 TCACGTTCCTGGCAACATTGGAATCTGTGGGGC----------AAAAATACCCTGAACAGCCACGAGAAGGAGTCCATGCGGTTTCTGAATGACTGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGTGGGAGAACGCGGAGCTGGAGACAAAACT------------------------------------CTGCCAGAGGGGCAAGTGCCACGAGTCCA-GTGTGTGCCCGGACTACCAGCCCTGCTTCCGCACCCTTGAGGAGCTCCAGCAGAAGGTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926436 277 - 7032639 CCACGTTCCTGGCAACATCGGAATCTGTGAGGT----------GAAAACACCTTGAACAGCCACGAGAAGGAGGCCATGCAGTTCCTGAATGACCACCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAGAACACGGAGCTGGAGACCAAACTCCGCGAGAGGAGCAAGTACCACGAGAGGAGCAAGTACCGCGAGAGGAGCAAGTACCACGAGTCCG-GCGCGTGCCCGGACTACCAGCCCTACTTCCGCACCATTGAGGAGCGCCAGCAGAAGGTAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851620 248 - 65901067 CGACATTCCCGGCAACATCGGAATCTGTGGGGCCTA---CTGGGAAGGCAGCCTGAATGGCCACGAGAAGGAGACCATGCGGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGACCTGGAGGCCAAGCT------------------------------------CCGCGAGTGGACCAGATGCCACGAGTCGA-GCGTGTGCCAGGACTACCAGTCCTACTTCCGCACCATCGAGGAGCTCCAGCAGAAGGTGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2935683 248 + 8555354 CCACATTCCCGGCAACATCGGAATCTGTGGGGCCTA---CGGCGAAGGCAGCCTGAATGGCCACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAACTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGGCCAAACT------------------------------------CCGCGAGTGGACCAGATGCCACGAGTCCA-GCGTGTGCCCGGACTACCAGTCCTACTTCCGCACCATCGAGGAGCTCCAGCAGAAGGTGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22733888 248 + 28711273 TCATGTTCCTGGCAACATTGGGATTTGCGGGGCCTA---TGGCCAAGGCAGCCTGAACAGCCATGAGAAGGAGACTATGCGTTTCCTGAATGACCGGCTGGCCAACTACCTGGAGAAGGTGCGGCAGCTGGAGCTCAACAACGCAGAGCTGGAGACCAAACT------------------------------------GCGCGAGTGGAGCAGGTGCCACGAGTCCA-GCGTGTGCCCAGACTACCAGTCCTACTTCTGTACCATCGAGGAGCTGCAGCAGAAGGTGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21977162 248 - 122082543 CCACTCCTCTGGCTTTGCTGGGAGCGGGGGATGGTT---CTGCGAGGGCGCCTTCAATGGCAACGAGAAGGCGACCATGCAGATCTTGAATGACCGACTGGCCAACTACCTGGAGAAGGTGCGGCAGCTGGAGCAGGAGAACACACAGCTGGAGTGCCGCAT------------------------------------CCGAGAGTGGTACGAGTGTCA-GATCCCATACATCTGCCCGGACTACCAGTCCTACTTCAAGACTGCTGAGGAGTTGCAGCAGAAGGTAA i mm10.chr11 C 0 I 581 s canFam3.chr9 21351872 248 + 61074082 CAACATTCCTGGAAACATTGGAGTCTGTGAGAACTA---TGGGGAAGGCGCTCCCAATGGCCACGAGAAGGTGACCATGCAGTTCCTGAATGATCGCCTGGCCAACTACCTGGAGAAGGTGCGCCAGCTGGAGAGGGACAATGAAGAGCTAGAGACCACTAT------------------------------------CCGAGAGGCAAGCAAATGCCACGAGTCTA-GCATGTGTCCAGACTACCAGTCCTACTTTCAGACCATCGAGGAGCTCCAGCAGAAGGTGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 252873 248 - 852752 CCACCCCTCTGGCTTTGTTGGGA---GTGTGGGCTGGCTCGGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTAGAGAAGGTGCGCCAGCTGGAGCGGGAGAACGCGGAGCTGGAGGGCCGCAT------------------------------------CCGTGAGTGGTATGAGAGTCAGGTCCCGT-ACATTTGTCCAGACTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGA i dasNov3.JH570468 T 58940 I 11525 a score=39400.000000 s hg38.chr17_GL383564v2_alt 21593 2 + 133151 GG s panTro5.chr17 16215470 2 + 83181570 GG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122827 2 + 83442489 GG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957941 2 + 4267968 GG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937334 2 - 2193130 GG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010607 2 - 77216781 GG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923207 2 - 80997621 GG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979471 2 + 10377808 GG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866613 2 - 8458610 GG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822935 2 + 75148670 GG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046131 2 + 4244037 GG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074283 2 + 4569836 GG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043595 2 - 159171411 GG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765951 2 + 3513951 GG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815412 2 + 1920343 GG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926713 2 - 7032639 GG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35851868 2 - 65901067 GG i micMur3.chr16 C 0 I 627 s proCoq1.NW_012135969v1 2935931 2 + 8555354 GG i proCoq1.NW_012135969v1 C 0 I 418 s otoGar3.GL873537 22734136 2 + 28711273 GG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21352120 2 + 61074082 GG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 264646 1 - 852752 -G i dasNov3.JH570468 I 11525 C 0 e mm10.chr11 21977410 581 - 122082543 I a score=1263179.000000 s hg38.chr17_GL383564v2_alt 21595 118 + 133151 TTTGCGGTGCACCAGATcaggggtcaggaatctgcttactgcctgtcggccaaat---ccggcccaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg s panTro5.chr17 16215472 118 + 83181570 TTTGCGGTGCACCAGATcaggggtcaggaatctgcttactgcctgtcggccaaat---ccggcccaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122829 118 + 83442489 TTTGCGGTGCACCAGATcaggggtcaggaatctgcttactgcctgtcggccaaat---ccggcccaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3957943 118 + 4267968 TTTGCGGTGCACCAGATcaggggtcaggaatctgcttactgcctgtcggccaaat---ccggcccaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937336 118 - 2193130 TTTGTGGTGCACCAGATcaggggtcaggaatctacttactgcctgttggccaaat---ccggcccaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010609 118 - 77216781 TTTGCAGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923209 118 - 80997621 TTTGCAGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979473 118 + 10377808 TTCGCAGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866615 118 - 8458610 TTTGCAGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64822937 118 + 75148670 TTTGCAGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046133 118 + 4244037 TTTGCGGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaagttttattggttcatggccatgctcatgcatttg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074285 118 + 4569836 TTTGCAGTGCACCAGATcagggttcaggaatctacttactgcctgtcggccaaat---ccggccaaccacctgcttttgcaaataaaattttattggttcatggccatgctcatgcatttg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043597 116 - 159171411 TTTGCAGCGTATCAGATcagggctcaggaatctacttactgcccattggccaaat---ctgacctgtcacctgtctttgcaaataaagttttattggtttgtggccatgctcatgca--tg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1765953 118 + 3513951 TTTGTGGTGTACCAGATcagggctcaggaatctacttactgcccattggctaaat---ccggcctgccacctgtttttgcaaataaagttgtattggttcatggccatgctcatgcatttg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815414 118 + 1920343 TTTGCGGTGTACCAGATcagggctcaggaatctatttactgcccattggctaaat---ccggcttgccacctgtttttgcaaataaagttttattggttcatggccatgctcatgcatttg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926715 116 - 7032639 TTTGCGGTGTACCAGATcagggctcaggaatgtacttattgcccattggccaaat---ccggcccgtcacctgtttttgcaaataaagttttattggttcgtggccatgctcatgca--tg i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22734138 45 + 28711273 ----------------------------------------------------------------------------CTGTACATAGGGTTTCACTGGTTCACAGCCTTGCGCTTTTATTTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21352122 105 + 61074082 TTTGTAGTGCTCCAGATGaggggttggcaaactat-------------ggctcat---ctggcctactgattgattttataaataaagttttattggtacatggccatgctcatttgttag i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 264647 100 - 852752 -------------------AGGCCCAGGATGGCTTTGGCTGCCCAGGAGCCAGGGCCACCAGCCCTGGACCTGC--TTGCAGatggtgcttcagaggtcacgaagtatgttcacgtctctg i dasNov3.JH570468 C 0 I 1121 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I a score=1592328.000000 s hg38.chr17_GL383564v2_alt 21713 139 + 133151 tatgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtagggtctgcaaagcctaaagtatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA s panTro5.chr17 16215590 139 + 83181570 tatgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtagggtctgcaaagcctaaagtatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGGCAGCAGTGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16122947 139 + 83442489 tatgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtagggtctgcaaagcctaaagtatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGGCAGCAGTGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958061 139 + 4267968 tatgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtagggtctgcaaagcctaaagtatttactatctgatcctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937454 139 - 2193130 tatattgtttgcagctgcttttatactacagtagcag-agttcagtcattgtaatggagagtgtatgctctgcaaagcctaaaatatttactatccgaccctttacaaaaaaagattactgac---------------------ccTGGGTTAGCAGTGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010727 139 - 77216781 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923327 139 - 80997621 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagaccgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979591 139 + 10377808 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866733 139 - 8458610 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtagtggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823055 139 + 75148670 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046251 139 + 4244037 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074403 139 + 4569836 tgtgttgtctgcagctgcttttgtactacagtggcag-agttcagtcattgtaatggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacaaaaaaagattactgac---------------------ccTGGGTCAGCAGTGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043713 140 - 159171411 tgtgttgtctgcagctgcttttgtgctgcagtggcagctgttcggtggtggtaatggggactgtatggtctgcaaagcctaaaatatttattatctgaccctttacagaagaagatggctgac---------------------ccTGGGTCAGCAGTGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766071 140 + 3513951 tgtgctatctacggctgcttttgtgctacagtggcaggggttcagtggttgtaatggagactgtatggtctgcaaagcctaaaatatttactatctgaccctttacagaagaagatgactgac---------------------ccTGGGTCAGCAGTGGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815532 140 + 1920343 tgtgctgtctgcagctgcttttgtgctacagtggcaggagttcagtggttgtaatggagactgtatggtttgcaaagcctaaaatatttactatctgaccctttacagaagaagatgactgac---------------------ccTGGGTCAGCAGTGGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926831 140 - 7032639 tgtgttgtccgcagttgcttttgtgctgcagtggcaggggttcagtggttgtaatggcgactgtatggtctgcaaagcctaaaatatttattatctgaccatttacagaagaagatgactgac---------------------ccTGAGTCAGCAGTGGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22734183 98 + 28711273 CATGCTGTCTAAAGC------------------------------------------agactgtatggtctgcaaagcctaaaatatttactatctgacctttatagagaaaatattacggac---------------------ccTGGATTAGCAGTGGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21352227 157 + 61074082 tgtattgcatatgactgcttttgtgctctaatggcag-agttgagtagttgtaacaga---ttcatggccttcaaagccttaaatatttactgtcttgctctttacagaaaaagattactgacATTTGCACAAAATTTTAAGGGCCTGGATTGGGAGTGAA i canFam3.chr9 C 0 I 21 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I a score=19703.000000 s hg38.chr17_GL383564v2_alt 21852 7 + 133151 TTTTTTT s panTro5.chr17 16215729 7 + 83181570 TTTTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123086 5 + 83442489 --TTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958200 6 + 4267968 -TTTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937593 6 - 2193130 -TTTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010866 6 - 77216781 -tttttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923466 6 - 80997621 -tttttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979730 6 + 10377808 -tttttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866872 6 - 8458610 -TTTTTT i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2046390 6 + 4244037 -tttttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074542 6 + 4569836 -tttttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043853 1 - 159171411 ------T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766211 6 + 3513951 -TTTTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815672 2 + 1920343 -----TT i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22734281 6 + 28711273 -AATTAT i otoGar3.GL873537 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I e canFam3.chr9 21352384 21 + 61074082 I e aotNan1.NW_018502359v1 6926971 0 - 7032639 C e chlSab2.chr16 64823194 0 + 75148670 C a score=1646737.000000 s hg38.chr17_GL383564v2_alt 21859 145 + 133151 T------TTCTTTT---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGATGAGATGTAGAATTTATCACTCTAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATAAAATTCCTAAATCGTAGTCAC-AAAA s panTro5.chr17 16215736 145 + 83181570 T------TTCTTTT---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGATGAGATGTAGAATTTATCACTCTAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATAAAATTCCTAAATCGTAGTCAC-AAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123091 145 + 83442489 T------TTCTTTT---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGATGAGATGTAGAATTTATCACTCTAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATAAAATTCCTAAATCGTAGTCAC-AAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958206 145 + 4267968 T------TTCTTTT---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGATGAGATGTAGAATTTATCACTCTAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATAAAATTCCTAAATCGTAGTCAC-AAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937599 144 - 2193130 T------TTTTTTT---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGATGAGATATAGAATTTATCGTTCCAGGATTCTG-GTTCATGCTTACTTAACTTCAGCACACAAAATTCCTAAATCGTAGTCAC-AAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30010872 154 - 77216781 ttttttttttttttttAAATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAGTTTGTAAAGGGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATCAAATCCCTAAATCATAGTCAC-AAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923472 151 - 80997621 tttttttttttttt---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATCAAATCCCTAAATCATAGTCAC-AAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979736 151 + 10377808 tttttttttttttt---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATCAAATTCCTAAATCATAGTCAC-AAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1866878 138 - 8458610 A----------------AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGCGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATCAAATCCCTAAATCATAGTCAC-AAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823194 144 + 75148670 -------TTTTTTA---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATCAAATCCCTAAATCATAGTCAC-AAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046396 150 + 4244037 t-tttttttttttt---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTCAGCACATCAAATCCCTAAATCATAGTCAC-AAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074548 153 + 4569836 ttttttttttttttA--AGTGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAGGGTGAGATGTGGAATTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAACTTTAGCACATCAAATCCCTAAATCGTAGTCACAAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043854 144 - 159171411 T------TTTTTTA---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAG-ATGAGATGTAGACTTTATCTCTCCAGGATTCTGAGTTCATGCTTACTTAGCTTCAGCACATGAAATCCCTAAATTGTAGTCAC-AAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766217 144 + 3513951 T------TTTTTTA---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAG-ATGAGATGTAGAATTTCTCTCTCCAGGATTTTGAGTTCATGCTTACTTAGCTTCAGCACATAAAATTCCTAAATCGTAGTCAC-AAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815674 144 + 1920343 T------TTTTTTA---AATGTGGGAAGAGAATCTCTTGAGTGAAGGTGAATGGGAATTTGTAAAG-ATGAGATGTAGAATTTATCTCTCCAGGATTCTGAGTTCACGCTTACTTAGCTTCAGCACGTAAAGTTCCTAAATCGTAGTCAC-AAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6926971 144 - 7032639 T------TTTTTTA---AATGTGGGAAGAGAATGTCTTGAGTGAAGGTGAATGGGAATTTGTAAAG-ATGAGATGTAGAATTTCTCTCTCCAGGATTCTGAGTTCATGCTTACTTAGCTTCAGCACATAAAATTCCTAAATCGTAGTCAC-AAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22734287 150 + 28711273 TATTATTTTTTTGA---ATTGTGGCAAGAGAATCTGTTGAGTGAAGATGAATGGGAATGCATAGAGCATGAGATGTACAATTCGTCTCTGTGGGTTGCT-AGTTCATGTTTAGTCAGTTTTAGCGCTTACAATTCCTAAATCGCAGCTAC-AAAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21352405 137 + 61074082 ------TTTTTTTT---ATTGTGGGAAGAGAATTTCTTGAGTGGAGGTGAATGGGACCATGTCAAAGATGAGATGTAGAATT--------CAGGATTCTGAATTTATGTTTACTTAGTCTCAGTATTTAGAATTATAACATTGTAGTTGC-AAAA i canFam3.chr9 I 21 I 495 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I a score=193969.000000 s hg38.chr17_GL383564v2_alt 22004 19 + 133151 ATCATGCTATTTTCATGAA s panTro5.chr17 16215881 19 + 83181570 ATCATGCTATTTTCATGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123236 19 + 83442489 ATCATGCTATTTTCATGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958351 19 + 4267968 ATCATGCTATTTTCATGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937743 19 - 2193130 ATCATGCTATTTGCATGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011026 19 - 77216781 ACCATGCTAATTTCATGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923623 19 - 80997621 ACCATGCTAATTTCATGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979887 19 + 10377808 ACCATGCTAATTTCATGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867016 19 - 8458610 ACCATGCTAATTTCATGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823338 19 + 75148670 ACCATGCTAATTTCATGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046546 19 + 4244037 ACCATGCTAATTTCATGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074701 19 + 4569836 ACCATGCTAATTTCATGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46043998 19 - 159171411 ACCATGCTAATTTTATGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766361 19 + 3513951 ACCATGCTAATTTTATGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815818 19 + 1920343 ACCATGCTAATTTTGAGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927115 19 - 7032639 GCCATGCTAATTTTATGAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22734437 19 + 28711273 ACAGTACTAATTTTGTGAA i otoGar3.GL873537 C 0 I 18 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I e canFam3.chr9 21352542 495 + 61074082 I a score=499202.000000 s hg38.chr17_GL383564v2_alt 22023 72 + 133151 AACCATGCAAAAACCGTGCTGAGTTTATGAAAGTTGCAGTATACTGAAACTTCTGGTGCAGTAAACAGGGCA s panTro5.chr17 16215900 72 + 83181570 AACCATGCAAAAACCGTGCTGAGTTTATGAAAGTTGCAGTATACTGAAACTTCTGGTGCAGTAAACAGGGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123255 72 + 83442489 AACCATGCAAAAACCGTGCTGAGTTTATGAAAGTTGCAGTATACTGAAACTTCTGGTGCAGTAAACAGGGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958370 72 + 4267968 AACCATGCAAAAACCGTGCTGAGTTTATGAAAGTTGCAGTATACTGAAACTTCTGGTGCAGTAAACAGGGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937762 72 - 2193130 AACCATGCAAAAACCGTGCTGAGTTTATGAAAGTTGCAGTATACTGAAACTTCTGGTGCAGTAAACAGGGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011045 72 - 77216781 AACCATGCAAAAACCGTGCTGTGTTTATGACAGTTGCTGTATGCTGAAACTTCCCGTGCAGTAAACAGGGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923642 72 - 80997621 AACCATGCAAAAACCGTGCTGTGTTTATGACAGTTGCTGTATGCTGAAACTTCCCGTGCAGTAAACAGGGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979906 72 + 10377808 AACCATGCAAAAACCGTGCTGTGTTTATGACAGTTGCTGTATGCTGAAACTTCCCGTGCAGTAAACAGGGCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867035 72 - 8458610 AACCATGCAAAAACCGTGCTGTGTTTATGACAGTTGCTGTATGCTGAAACTTCCGGTGCAGTAAACAGGGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823357 72 + 75148670 AACCATGCAAAAACTGTGCTGTGTTTATGACAGTTGCTATATGCTGAAACTTCCGGTGAAGTAAACAGGGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046565 72 + 4244037 AACCATGCAAAAACCGTGCTGTGTTTATGACAGTTGCTGTATGCTGAAACTTCCAGTGCAGTAAACAGGGCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074720 72 + 4569836 AACTGCGTAAAAACTGTGCTGTGTTTATGACAGTTGCTGTATGCTGAAACTTCTGGTGCAGCAAACAGGGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044017 50 - 159171411 AACCATACAAAAACTGTGCTGAGTTTATGAAAGCTGC----------------------AGTAAACAGAACA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766380 41 + 3513951 AACCA---------TGTGCTGAGTTTATGAAAGCTGC----------------------AGCAAACAGAGCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815837 39 + 1920343 GACCA-----------TGCAAGCTTCATGAAAGCTGC----------------------AATAAATAGAGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927134 50 - 7032639 AACCATGGAAAAAATGTGCTGAGTTTATGAAAGCTGC----------------------AGTAAACAGAGCA i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I e canFam3.chr9 21352542 495 + 61074082 I e otoGar3.GL873537 22734456 18 + 28711273 I a score=131496.000000 s hg38.chr17_GL383564v2_alt 22095 12 + 133151 AAAGGAATATTT s panTro5.chr17 16215972 12 + 83181570 AAAGGAATATTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123327 12 + 83442489 AAAGGAATATTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958442 12 + 4267968 AAAGGAATATTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937834 12 - 2193130 AAAGGAATATTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011117 12 - 77216781 AAAGGAGTATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923714 12 - 80997621 AAAGGAGTATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979978 12 + 10377808 AAAGGAGTATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867107 12 - 8458610 AAAGGAGTATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823429 12 + 75148670 AAAGGAGTATTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046637 12 + 4244037 AAAGGAGTATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074792 12 + 4569836 AAAGGAGTATTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044067 12 - 159171411 AAAGGAGTATTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766421 12 + 3513951 AAAGAAGTATTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815876 12 + 1920343 AAAGGAGTATTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927184 12 - 7032639 AAAGGAGTATTT i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21353037 12 + 61074082 AAGGCAGCATGT i canFam3.chr9 I 495 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I e otoGar3.GL873537 22734456 18 + 28711273 I a score=716182.000000 s hg38.chr17_GL383564v2_alt 22107 69 + 133151 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAACCTCTTATGCATATCTAT-------TGTCA s panTro5.chr17 16215984 69 + 83181570 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAACCTCTTATGCATATCTAT-------TGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123339 69 + 83442489 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAACCTCTTATGCATATCTAT-------TGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958454 76 + 4267968 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAACCTCTTATGCACATCTATTGTCACCTGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937846 69 - 2193130 GCTAACATCCTTACCAAGGCACTGTCTATCCACACAACAGCATCAACCTCTTATGCATATCTAT-------TGTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011129 69 - 77216781 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923726 69 - 80997621 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1979990 69 + 10377808 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867119 69 - 8458610 CCTAACATCCTTGCAAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823441 69 + 75148670 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046649 69 + 4244037 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074804 69 + 4569836 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACAGCATCAGCATCTTATGCATATCTGT-------TGTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044079 69 - 159171411 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACTGCATCAACCTCTTATGGGTATCTGT-------TGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766433 69 + 3513951 CCTAATATCCTTGCCGAGGCAGTGCCTATCCACACAACCGCATCGACCTCTTATGGTTATCTGT-------TGTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815888 69 + 1920343 CCTAACACCCTTGCCAAGGCAGCATCTATCCACACAACCGCGTCAACCTCTTTTGGGTGTCCGT-------TGTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927196 69 - 7032639 CCTAACATCCTTGCCAAGGCAGTGTCTATCCACACAACCGCATCAACCTCTTATGGGTATCTGT-------CGTCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22734474 55 + 28711273 CCTAACTTCC------AAGCAGGGAATA---GCATGACAGAAGTGTTTTCTTCTG-----CTGT-------TGGTG i otoGar3.GL873537 I 18 I 3 s canFam3.chr9 21353049 69 + 61074082 TCTAATGCCTTTCATGAACCAGTATATGGCTATTCAGTAGCATTGGTCTCTTCTGCATATCTGG-------TGGCC i canFam3.chr9 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2935933 418 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I a score=1886192.000000 s hg38.chr17_GL383564v2_alt 22176 138 + 133151 CCTTTGATTATCCAGTTAAAGCTTCTGAAGAGCCTACATCTTAGTTTTGGAGACAAGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG s panTro5.chr17 16216053 138 + 83181570 CCTTTGATTATCCAGTTAAAGCTTCTGAAGAGCCTACATCTTAGTTTTGGAGACAAGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123408 138 + 83442489 CCTTTGATTATCCAGTTAAAGCTTCTGAAGAGCCTACATCTTAGTTTTGGAGACAAGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958530 137 + 4267968 CCTTTGATTATCCACTTAAAGCTTCTGAAGAGCCTACATCTTAGTTTTGGAGACAAGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAA-CTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1937915 138 - 2193130 CCTTTGATTATCCAGTTAAAGCTTCTGAAGAGCCTACATCTTAGTTTTGGAGACAAGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011198 138 - 77216781 CTTTTGATTATCCAGCTAAAGCTTCTGAAGAGCCTACATCTTAGTTTCAGAGCCAGGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTAGGGAGGTTGGACAACCAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923795 138 - 80997621 CTTTTGATTATCCAGCTAAAGCTTCTGAAGAGCCTACATCTTAGTTTCAGAGCCAGGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTAGGGAGGTTGGACAACCAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980059 138 + 10377808 CTTTTGATTATCCAGCTAAAGCTTCTGAAGAGCCTACATCTTAGTTTCAGAGCCAGGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTAGGGAGGTTGGACAACCAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867188 138 - 8458610 CCTTTGATTATCCAGCTAAAGCTTCTGAAGAGCCTACATCTTAGTTTCAGAGCCAGGAAGACAAGGAATGTCAAAATGGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823510 138 + 75148670 CCTTTGATTATCCAGCTAAAGCTTCTGAAGAGCCTACATCTTAGTTTCAGAGCCAGGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTTAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046718 138 + 4244037 CCTTTGATTATCCAACTAAAGCTTCTGAAGAGCCTACATCTTAGTTTCAGAGCCAGGAAGACAAGGAATGTCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2074873 138 + 4569836 CCTTTGATTATCCAGCTAAAGCTTCTGAAGAGTCTACATCGTAGTTTCAGAGCCAGGAAGACAAGGAATATCAAAATAGGGGTTACAGAAACCTGGCTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAGCTAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044148 138 - 159171411 CCTTTCATGATCCAGTCGAAGCTTCTGAAGAGCCTGATTCTTAGTTTTGGAGACAGGAAGACAAAGAATGTTAAAATAGGGGTCACAGAAACCTGACTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766502 138 + 3513951 CCTTTGATGATCCAGTCAAAGCTTCTGAAGCACTTGATTCTTAGTTTTGGAGACAGGAAGACAAAGAATGCTAAAATAGGGGTCACAGAAACCTGACTAGATTCAGAGAAGACCCGTGGGGAGGTTGGACAACCAGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1815957 138 + 1920343 CCTTTGATGATCCAGTCAAAGCTTCTGAAGAGCCTGATTCTTAATTTTGGAGACAGGAAGACAAAGAATGTTAAAATAGGGGTCACAGAAACCTGACTAGATTCAGAGAAGACCCGTGGGGAGGTTGGACAACCAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927265 138 - 7032639 CCTTTGATGATCCAGTCAAAGCTTCTGAAGAGCCTGATTCTTAGTTTTGGAGATAGGAAGACAAAGAATGTTAAAATAGGGGTCACAGAAACCCGACTAGATTCAGAGAAGACCTGTGGGGAGGTTGGACAACCAGAG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2936351 138 + 8555354 CCTTTGAGTATCCAGTCAATGCTTCTGAAGAGCCTACATCTTAGTTTTGGGGTCAGGAAGACAAAGAATGTCAAAATAGGGGCCATAGACACCTGGCTAGATGCAGAGAAGACCTTTGGGGAGGTTGGGCAACCAGAG i proCoq1.NW_012135969v1 I 418 I 89 s otoGar3.GL873537 22734532 138 + 28711273 CCTTTGATTATCTAGTCAATGCGTCTGAAGAGCCTGCATTTTAGTTTTGGAGACAGGAAGACAAAGAATGTCAAAATAGGGGCCATAGAAACCTGGCTAGATTCACAGAAGGCCTCTGCGGAGGTTGGGCAACCAGAG i otoGar3.GL873537 I 3 I 3 s canFam3.chr9 21353118 137 + 61074082 CCTTTAATAATCAATGCAATGCTTCCTAAGGGCCTATATTTTAGTTTTGGAGATAGGAAGACAAAAAATGTC-AAGTAGGGGCCACAGAAACCTGGCTAGATTCACAGAAGACCTTTGGGGAAGTTGACCAACCAGCA i canFam3.chr9 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I a score=852700.000000 s hg38.chr17_GL383564v2_alt 22314 76 + 133151 ---GAAAGATCTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGCCAGTCCTCTGTTCTGTGGCCTAGt-------ttt s panTro5.chr17 16216191 76 + 83181570 ---GAAAGATCTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGCCAGTCCTCTGTTCTGTGGCCTAGA-------ttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123546 74 + 83442489 ---GAAAGATCTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGCCAGTCCTCTGTTCTGTGGCCTAGA---------t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958667 73 + 4267968 ---GAAAGATCTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGCCAGTCCTCTGTTCTGTGGCCTAG----------t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938053 83 - 2193130 ---GAAAGATCTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGCCAGTCCACTGTTCTGTGGCCTAGATTCCAGAttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011336 83 - 77216781 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGTTAGTCCACTGTTCTGTGGCCTAGATTCTGGAttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27923933 83 - 80997621 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGTTAGTCCACTGTTCTGTGGCCTAGATTCTGGAttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980197 83 + 10377808 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGTTAGTCCACTGTTCTGTGGCCTAGATTCTGGAttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867326 83 - 8458610 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCACAGTTAGTCCACTGTTCTGTGGCCTAGATTCTGGAttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823648 83 + 75148670 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGTTAGTCCACTGTTCTGTGGCCTAGATTCTGGAttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046856 83 + 4244037 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCACAGTTAGTCCACTGTTCTGTGGCCTAGATTCTGGAttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075011 83 + 4569836 ---GAAAGAACTTCTTTAGAACAGATCCTACTTTATCTAAAACATTCATAGTTAGTCCACTGTTTTGTGGTCTAGATTCTGGAttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044286 83 - 159171411 ---GAAAGAATTTATTTAGAATGGATCCTACTTTATCTAAAACATTCATAGCCAGTTCACTGTTTTGTGGTCTAGATTCCAGACtt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766640 83 + 3513951 ---GAAAGAATTTATTTAGAATGGATCCTACTTTATCTAAAACATTCATAGCCAGTCCACTGTTTTGTGGCCTAGATTCCGGACtt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816095 83 + 1920343 ---GAAAGAATTTATTTAGAACGGATCCTACTTTATCTAAAACTTTCATAGCCAGTCCATTGTTTTGTGGCCTAGATTCTGGACtt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927403 83 - 7032639 ---GAAATAATTTATTTAGAATGGATCCTACTTTATCTAAAACATTCATAGCTATTCCACTGTTTTGTGGCCTAGATTCCGGACtt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22734673 76 + 28711273 ---GGAACTTCTTATTTGGAATGGGTTTTACTTTGTCTAAGACATCCATAGCCCGTCTCCTGTTCTGTGGCCTAGAGTC------- i otoGar3.GL873537 I 3 C 0 s canFam3.chr9 21353255 79 + 61074082 TAAGGGACTTCTTATTAAGAAGGCATCTGCCTTTATTTAAACCTTTTATAACCAGCCCATTGTCCTGTGGCCTAGATTT------- i canFam3.chr9 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2936489 89 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I a score=2748672.000000 s hg38.chr17_GL383564v2_alt 22390 295 + 133151 t---ttttttttt-------tttttgagacaaagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaaactctgcctcccaggttcaagtgattctcatgtctcagcttcctgagtagctgggattacaagtgtgcgccaccactcctagctaacttttatatttttagtagagatggtgtttcaccatgttgcccaggctggtcttgaactcctgacctcaggtgatccatctgccttggtctcccaaagtgcggggattacaggcatgagccactgcgtccgg s panTro5.chr17 16216267 295 + 83181570 t---ttttttttt-------tttttgagacaaagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaaactctgcctcccaggttcaagtgattctcatgtctcagcttcctgagtagctgggattacaagtgtgcgccaccactcctagctaacttttatatttttagtagagacggtgtttcaccatgttgcccaggctggtcttgaactcctgacctcaggtgatccatctgccttggtctcccaaagtgctgggattacaggcatgagccactgcgtccgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123620 295 + 83442489 t---ttttttttt-------tttttgagacaaagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaaactctgcctcccaggttcaagtgattctcatgtctcagcttcctgagtagctgggattacaagtgtgcgccaccactcctagctaacttttatatttttagtagagacggtgtttcaccatgttgcccaggctggtcttgaactcctgacctcaggtgatccatctgccttggtctcccaaagtgccgggattacaggcatgagccactgcgtccgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3958740 294 + 4267968 t---ttttttttt-------tttttgagacaaagtctcgctctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccaggttcaagtgattctcatgtctcagcttcctgagtagctgggattacaagtgtgcaccaccactcctagctaacttttatatttttagtagagacggtgtttcaccatgttggcc-ggctggtcttgaactcctgacctcaggtgatccatctgccttggtctcccaaagtgccgggattacaggcatgagccactgcgtctgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938136 295 - 2193130 t---ttttttttt-------tttttgagacaaagtcttgctctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctctgcctcccaggttcaagtgattctcatgtctcagcttcctgagtagctgggattacaagtgtgcaccaccactcctggctaacttttatatttttagtagagacagtgttttaccatgttggccaggctggtcttgaactcttgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccactgcgtccgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011419 305 - 77216781 tttgtttgtttgtttgtttgtttttgagacagcgtctcactctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttcaagtgattcttgtgtatcagcttactgagtagctggggttaaaagcgttcaccaccactcctagctaacttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacagctgtgagccactgtgcctgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924016 305 - 80997621 tttgtttgtttgtttgtttgtttttgagacagcgtctcactctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttcaagtgattcttgtgtatcagcttactgagtagctggggttaaaagcgttcaccaccactcctagctaacttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacagctgtgagccactgtgcctgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980280 305 + 10377808 tttgtttgtttgtttgtttgtttttgagacagcgtctcactctgtcacccaggctggagtgcagtggtgcaatctcagttcactgcaacctctgcctcccgggttcaagtgattctcgtgtatcagcttactgagtagctggggttaaaagcgttcaccaccattcctagctaacttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacagctgtgagccactgtgcctgg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867409 302 - 8458610 t---tttgtttgtttgtttgtttttgagacagcgtctcactctgtcacccaggctggagtgcagtggtgcaatcttagctcactgcaacctctgcctcctgggttcaagtgattctcgtgtatcagcttactgagtagctggggttaaaagcgtgcaccaccactcctagctaacttttgtatttttagtagagatggggtttaaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacagctgtgagccactgcacctgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64823731 300 + 75148670 t---tt--tttgtttgtttgtttttgagacagcgtctcactctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcgacctctgcctcccgggttcaagtgattctcgtgtatcagcttactgagtagctggggttaaaagcgtgcaccaccactcctagctaacttttgtatttttagtagagatggagtttcaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacagccgtgagccactgcgcctgg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2046939 302 + 4244037 t---tttgtttgtttgtttgtttttgagacagcgtctcactctgtcacccaggctggagtgcagtggtgcaatcttagctcactgcaacctctgcctcctgggttcaagtgattctcgtgtaacagcttactgagtagctggggttaaaagcgtgcaccaccactcctagctaacttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattaaagctgtgagccactgcacctgg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075094 302 + 4569836 t---ttttttttttggtttgtttttgagacagcatctcactctgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccgggttcaagtgattcttgtgtatcagcttcctgagtagctggggttaaaaacgtgcaccaccactcctagctaacttttgtatttttagtagagatggggtttcaccatattggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacagccatgagccactgcgcctgg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044369 293 - 159171411 t---ttttttttt-------ttttc-agatggagtcttgctctgtcacccaggatggagtgcagtggtgtgatcttggctcactgcaacctctgcctcct-ggttgaagtgattctcgtgcctcagcctcctgagtagctaggatttcaagtatgtaccacaactcccagctaatttttgtatttttagtagagatggggtttcaccatgctggccagactggtcttgaactcctgacctcaggtgatccacttgcctcagcctcccaaagtcctgggattgtaggcgtgagccaccgtgcttag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1766723 291 + 3513951 t---ttttttttt-------tg----agatggagtcttgctctgttacccaggatggagtgcagtgttgcaatcttggctcactgcaacctctgcctcctgggttgaagtgattcttgtgcctcagcctcccgagtagctaggatttcaagcatgtaccccaactcccagctaatttttgtatttttagtagaaatggggtttcaccatgctggccaggctgggcttgaactcctgacctcaggtgatccacttgcctcagcctcccaaagtcctgggattgtaggcgtgagccactgcgcctag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816178 295 + 1920343 t---ttttttttt-------tttttgagatggagtcttgctctgtcgcccaggatggagtgcagtggtgcgatcttggctcactgcaacctctgcctcctgggttgaagtgattctcctgcctcagcctcccgagtagctaggatttcaagcaggtaccaccactcccagctaatttttgtatttttagtagagatggggtttcaccatgctggccaggctggtcttgaactcctgacctcaggtgatccacttgcctcagcctcccaaagtcctgggattgtaggcatgagccaccatgcctag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927486 290 - 7032639 t---ttttttttt-------g-----agatggagtcttgctctgtcacccaggatggagtgcagtggtgcgatcttggcttactgcaacctctgcctcctgggttgaagtgattctcgtgcctcagcttcctgagtagctaggatttcaagcatgtaccaccattcccacctaatttttgtatttttagtagagatggggtttcaccatgctggccaggctggtcttgaactcctgacctctggtgatccacttgcctcagcctcccaaagtcctgggattgtaggcgtgagtcaccgcgcctag i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2936489 89 + 8555354 I e micMur3.chr16 35851870 627 - 65901067 I e dasNov3.JH570468 264747 1121 - 852752 I e canFam3.chr9 21353334 0 + 61074082 C e otoGar3.GL873537 22734749 0 + 28711273 C a score=13600.000000 s hg38.chr17_GL383564v2_alt 22685 1 + 133151 c s panTro5.chr17 16216562 1 + 83181570 c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123915 1 + 83442489 c i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959034 1 + 4267968 c i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938431 1 - 2193130 c i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011724 1 - 77216781 c i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924321 1 - 80997621 c i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980585 1 + 10377808 c i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867711 1 - 8458610 c i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824031 1 + 75148670 c i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047241 1 + 4244037 c i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075396 1 + 4569836 c i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044662 1 - 159171411 c i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767014 1 + 3513951 c i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816473 1 + 1920343 c i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927776 1 - 7032639 c i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35852497 1 - 65901067 C i micMur3.chr16 I 627 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2936489 89 + 8555354 I e dasNov3.JH570468 264747 1121 - 852752 I e canFam3.chr9 21353334 0 + 61074082 C e otoGar3.GL873537 22734749 0 + 28711273 C a score=74386.000000 s hg38.chr17_GL383564v2_alt 22686 5 + 133151 cAGAT s panTro5.chr17 16216563 5 + 83181570 cAGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123916 5 + 83442489 cAGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959035 5 + 4267968 cAGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938432 5 - 2193130 cAGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011725 5 - 77216781 cAGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924322 5 - 80997621 cAGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980586 5 + 10377808 cAGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867712 5 - 8458610 cAGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824032 5 + 75148670 cAGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047242 5 + 4244037 cAGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075397 5 + 4569836 cAGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044663 5 - 159171411 cAGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767015 5 + 3513951 TGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816474 5 + 1920343 cGGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927777 5 - 7032639 cAGAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35852498 5 - 65901067 CAGAT i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22734749 5 + 28711273 CAGAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21353334 5 + 61074082 CAGAT i canFam3.chr9 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e proCoq1.NW_012135969v1 2936489 89 + 8555354 I e dasNov3.JH570468 264747 1121 - 852752 I a score=3632324.000000 s hg38.chr17_GL383564v2_alt 22691 253 + 133151 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAGCAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCACATCTTCCTTCCCACACCACAAAAGCATCTCTTGCACGTTTGGGAGTTTGTGTTGTCCAGGCGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA s panTro5.chr17 16216568 253 + 83181570 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAGCAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCACATCTTCCTTCCCACACCACAAAAGCATCTGTTGCATGTTTGGGAGTTTGTGTTGTCCAGGTGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16123921 253 + 83442489 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAGCAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCACATCTTCCTTCCCACACCACAAAAGCATCTGTTGCATGTTTGGGAGTTTGTGTTGTCCAGGTGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959040 253 + 4267968 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAACAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCCTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAGGTCTCTTGCACATCTTCCTTCCCACACCACAAAAGCATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCACGCGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938437 251 - 2193130 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAGCAAGCCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTC--TGTCTTCATCCTTTTCCAAGAAGTCTCTTGCACATCTTCCTTCCCATACCACAAAAGCATCTCTTGCATGTTTGGGAGTTTGTGTTGTTCAGGCGGATGCTGTAGGTTCAACTTTAGCCAAAAAAACTTCCTCTCACCTGAGGCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011730 253 - 77216781 CTTCTTATTTATATTGGGCTAAGCATCCTATCTGGCAAAATGACAGCAAATCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCTTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924327 253 - 80997621 CTTCTTATTTATATTGGGCTAAGCATCCTATCTGGCAAAATGACAGCAAATCTTTGTTACATGTTCAGTTTGCTACTGTCTTTCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCCTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980591 253 + 10377808 CTTCTTATTTATATTGGGCTAAGCATCCTATCTGGCAAAATGACAGCAAATCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCTTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCAACTGAGGCTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867717 253 - 8458610 CTTCTTATTTATATTGGGCTAAGCATCCTATCTGGCAAAATGAAAGCAAATCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCTTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824037 253 + 75148670 CTTCTTATTTATATTGGGCTACGCATCCTATCTGGCAAAATGAAAGCAAATCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCTTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGCGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047247 253 + 4244037 CTTCTTATTTATATTGGGCTAAGCATCCTATCTGGCAAAATGAAAGCAAATCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCTTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTAGGTTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075402 253 + 4569836 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAGCAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTCGACTCTATGTCTTCATCCTTTTCCAAGAAGTCTCTTGCAAATCTTTCTTCCCACACCACGAAAACATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTAGATTCAACTTCAGCCAATAAAACTTCCTCTCACCTGAGGCTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044668 253 - 159171411 CTTCTTATTTATATTGGGCTAAGCATCATATCTGGCAAAATGAAAGCAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCGTCTCCTGGTCCCTTTGACTCTATGCCTTCATCCTTTGCCAAGAAGTCTCTTGCACATCTTCTTTCCCACACCACAAAAGCATCTTTTGCATGTTTGGGAGTTTGTGCTGTCTAGGGGGATGTTGTAGTTTCAACTTCAGCCTAGAAAACTTCCTCTCACCTAAGGCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767020 253 + 3513951 CTTCTGATTTATATTGGGCTAAGCATCATATCTGGAAAAATGAAAGCAAGTCTTCATTATATGTTCAGTTTGCTACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGCCTTCATCCTTTGCCAAGAAGTCTCTTGCACGTCTTCCTTCCCACACCACGAAAGCATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGCTGTGGTTTCAACTTCAGCCAAGGAAACTTTCTCTCACCTAAGGCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816479 253 + 1920343 CTTCTTATTTATATTGGGCTAAGAATCATATCTGGCAAAATGGAAGCAAGTCTTCGTTATGTGTTCAGTTTGCCACTGTCTTCCATCTCCTGGTTCCTTTGACTCTATGCCTTCATCCTTTGCCAAGAAGTCTCTTGCACATCTGCCTTCCAGAACCACGAAAGTATCTCTTGCATGTTTGGGAGTTTGTGCTGTCCAGGGGGATGTTGTAGTTTCAACTTCAGCCAAGGAAACTTCCTCTCACCTAAGGCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6927782 253 - 7032639 CTTCTTATTTATATTGGGCTAAGCATCGTATCTGGCAAAATGAAAGCAAGTCTTTGTTATATGTTCAGTTTGCTACTGTCTTCCATCTCCCGGTTCCTTTGACTCTATGCCTTCATCCTTTGCCAAGAAGTCTCTTGCACATCTTCCTTCCCACACCACAAAAGCATCTCTTGCATGTTTGGGAGTTTGTGTTGTCCAGGGGGATGTTGTACTTTCAACTTCAGCCAAGAAAACTTCCTGTCACCTAAGGCCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35852503 251 - 65901067 CTTCTTGTTTATATTGGGCTAAGCATCACATCTGGCGAAATCGAATCAAATCTTTCTTATATGTCCAGTTGGTT-CTACCTTCCATCTCCCGGTTCCTCCGACTCCATGCCTTCACCTTTTGCCAAGAGCCCTCTTGCACATCCTCCTT-CTGCACCACGAAAGCATCTCATGCACGTCTGTGAGTTTGTGTTGTCTGAGGGGATGTTGTAATTTGAATCTCAGCCAATGGAACTTCCTCTGAGCCAAGGCCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2936578 251 + 8555354 CTTCTTGTTTATATTGGGCTAAGCATCACATCTGGCGAAATCAAATCAAATCTTTCTTATATGTCCAGTTGGTT-CTACCTTCCATCTCCCGGTTCCTCCGACTCCATGCCTTCACCTTTTGCCAAGAACCCTCTTGCACATCCTCCTT-CTGCACCACGAAAGCATCTCATACACGTCTGTGAGTCTGTGTTGTCTAAGGGGATGTTGTAGTTTGAATCTCAGCCAGTGGAACTTCCTCCGAGCCAAGGCTA i proCoq1.NW_012135969v1 I 89 C 0 s otoGar3.GL873537 22734754 248 + 28711273 CTTCTTGTTTATATTTGGCTAAGCATCACATCTGGCAAAGTAAAATCAAATCTTTCTTATGTGACCAGTCGGTT-CTACCTTCCATTGCCCAGTTCCTCCAACTCTGTGCCTTCACCCTCTGCCAAGAATTCTCCTGAACGTCTTC----CTGCTCCATGAAAGCATCTAGTCCATGTCTGGGAGTTTGTGTTGTCTAAGGAGATGCTGTAGTGTGAATGTTAGCCAGTGGAATTTCCTTTGACTCAAGGTCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21353339 250 + 61074082 ---CTTGTTCATATCAGGCTAAATATTATGGCTGGCAAAATAAAATTAAGTCTCTGTTATATGTTCAGTTCACTATTCCTTTCCATTTCCCAGTTCTTTTGGCTGTATGCCTTTTGCCTTTGCCAAGCATCCTCATACACACCCCCTCTCCTATACCACACTAGCATCTCTTATGTGTTTGGGAGTTTGTGTTGTCCAAGGGGATGTTGTCATTTGAATCTCAGCCAATGGAACTTCTTTTGACTCGAGGCCA i canFam3.chr9 C 0 C 0 e mm10.chr11 21977410 581 - 122082543 I e dasNov3.JH570468 264747 1121 - 852752 I a score=381239.000000 s hg38.chr17_GL383564v2_alt 22944 30 + 133151 TAGGTGTCTCTGGGATCAGTAAGTCACTTA s panTro5.chr17 16216821 30 + 83181570 TAGGTGTCTCTGGGATCAGTAAGACACTTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124174 30 + 83442489 TAGGTGTCTCTGGGATCAGTAAGACACTTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959293 30 + 4267968 TAGGTGTCTCTGGGATCAGTAAGTCACTTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938688 30 - 2193130 TAGGTGTCACTGGGATCAGTAAGTCACTTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30011983 30 - 77216781 TAGGCGTCTCTGGGATCAGTAAGTCACTTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924580 30 - 80997621 TAGGCGTCTCTGGGATCAGTAAGTCACTTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980844 30 + 10377808 TAGGCGTCTCTGGGATCAGTAAGTCACTTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1867970 30 - 8458610 TAGGCGTCTCTGGGATCAGTAAGTCACTTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824290 30 + 75148670 TAGGCGTCTCTGGGATCAGTAAGTCACTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047500 30 + 4244037 TAGGCGTCTCTGGGATCAGTAAGTCACTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075655 30 + 4569836 TAGGTGTCTCTGGGATCAGTAAGTCACTTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044921 30 - 159171411 TCAGTGTCTCTGAGATCAGTAAATCACTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767273 30 + 3513951 TCGGTGTCTCTGGGATCAGTAAGTCACTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816732 30 + 1920343 TCGGTGTCTCTGGGATCAGTAAATCACTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6928035 30 - 7032639 TCGGTGTCTCTGGGATCAGTAAATCACTCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35852754 30 - 65901067 CAGGTGGCTCTGGGAACAGTACATCACCCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2936829 30 + 8555354 CAGATGGCTCTGAGAACAGTAAACCATCCG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22735002 30 + 28711273 CAGATGGCTCTGAGAATAGTAAATCACTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21977991 23 - 122082543 TGGGTCTTTCTCAGTTCAGGAAA------- i mm10.chr11 I 581 C 0 s canFam3.chr9 21353589 26 + 61074082 TTGATGGCTCTGGAGATAGTGAA----TTA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 264747 1121 - 852752 I a score=119044.000000 s hg38.chr17_GL383564v2_alt 22974 9 + 133151 CTGAGCCTA s panTro5.chr17 16216851 9 + 83181570 CTGAGCCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124204 9 + 83442489 CTGAGCCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959323 9 + 4267968 CTGAGCCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938718 9 - 2193130 CTGAGCCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012013 9 - 77216781 TTGAACCTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924610 9 - 80997621 TTGAACCTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980874 9 + 10377808 TTGAACCTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868000 9 - 8458610 TTGAACCTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824320 9 + 75148670 TTGAACCTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047530 9 + 4244037 TTGAACCTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075685 9 + 4569836 TTGAACCTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044951 9 - 159171411 CCTAGCCTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767303 9 + 3513951 CTTAGCCTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816762 9 + 1920343 CTTAGCCTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6928065 9 - 7032639 CTTAGCCTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35852784 9 - 65901067 CTGAGCCTA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2936859 9 + 8555354 CTGAGCCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22735032 9 + 28711273 CTGGGCTTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978014 7 - 122082543 --AAACCTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21353615 9 + 61074082 CCAGGCCTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 265868 9 - 852752 CTGATCTCA i dasNov3.JH570468 I 1121 T 12109 a score=1898585.000000 s hg38.chr17_GL383564v2_alt 22983 119 + 133151 CTTTCTT-ACCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAATTGGCTGCAGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACAGGGA s panTro5.chr17 16216860 119 + 83181570 CTTTCTT-ACCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAATTGGCTGCAGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACAGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124213 119 + 83442489 CTTTCTT-ACCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAATTGGCTGCAGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACAGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959332 119 + 4267968 CTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAATTGGCTGCAGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACAGGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938727 119 - 2193130 CTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAATTGGCTGCGGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACGGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012022 119 - 77216781 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAACTGGCCGCGGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACGGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924619 119 - 80997621 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAACTGGCCGCGGATGACTTCAGGACCAAGTGAGT--TGGGGTTGGACGGGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1980883 119 + 10377808 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAACTGGCCGCGGATGACTTCAGGACCAAGTGAGT--tgggattggacgggga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868009 119 - 8458610 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAACTGGCCGCGGATGACTTCAGGACCAAGTGAGT--TGGGATTGGACGGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824329 119 + 75148670 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAACTGGCCGCGGATGACTTCAGGACCAAGTGAGT--tgggattggacgggga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047539 119 + 4244037 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAACTGGCCGCGGATGACTTCAGGACCAAGTGAGT--tgggattggacgggga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075694 121 + 4569836 TTTTCTT-ATCCCAGATTCTGTGCACCAAATCGGAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAATTGGCCGCGGATGACTTCAGGACCAAGTGAGTTGTGGGATTGGACGGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46044960 109 - 159171411 CTTTCTT-ATCCCAGATTCTGTGCACCAAATCATAGAACAATAGGCTGGTTGTGCAAATAGACAGTGCCAAGTT-GCTGGGGATGACT---------AGTGAGT--TGGGGTCGGATGGGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767312 109 + 3513951 CTTTCTT-ATCCCAGATTCTGTGCACCAAATCACAGAACAGTAGGCTGGTTGTGCAAATAGACAATGCCAAGTT-GCTGGGGATGACT---------AGTGAGT--TGGGGTCAGATGGGGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816771 108 + 1920343 CTTTCTT-ATCCCAGACTCTGTGCACCAAATCATAGAACAATAGGCTGGTT-TGCAAATAGACAAAGCCAAGTT-GCTGGGGATGACT---------AGTGACT--TGGGGTTGGATGGGGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6928074 109 - 7032639 CTTTCTT-ATCCCAGATTCTGTGCACCGAATCATAGAACAATAGGCTGGTTGTGCAAATAGACAATGCCAAGTT-GCTGGGGATGACT---------AGTGAGT--TGGGGTCGGATGGGGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35852793 118 - 65901067 CTTTCTT--CCCCAGATCCTGTGCATCAAATCTGAGAACAACAGGCTGGTCGTGCACATAGACAATGCCAAGCTGGCCGCAGACGACTTCAGGACCAAGTGAGT--TGGGGTTGGGCAGGGA i micMur3.chr16 C 0 I 935 s proCoq1.NW_012135969v1 2936868 118 + 8555354 CTTTCTC--CCCCAGATCCTGTGCCTCAAATCTGAGAACAACAGGCTGGTCGTGCAAATAGACAATGCCAAGCTGGCCGCAGACGACTTCAGGACCAAGTGAGT--TGGGGTTGGACAGGGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22735041 118 + 28711273 CTTTCTT--TCCCAGATCCTGTGCATCAAATCTGAGAACAACCGGCTGGTTGTGCAAATAGACAATGCCAAGCTGGCCGCAGATGACTTCAGGACCAAGTGAGT--TGGGGCTGAAAGGGGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978021 114 - 122082543 TTGTTTT----TCAGATCCTGCTGACCAAGTCTGAGAATGCCAGGCTGATATTACAAATTGACAATGCCAAGCTGGCTGCTGATGACTTCCGGACCAAGTGAGT----AGCCCAAACAGGAG i mm10.chr11 C 0 I 4 s canFam3.chr9 21353624 120 + 61074082 TTTTCTTTCCCCCAGATTCTGTGCATCAAATCTGAGAACAACAGGCTGGTTGTGCAAATAGACAATGCCAAGCTGGCTGCAGATGACTTCAGGACCAAGTGAGT--TGGGGTACAACAGGCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 253768 118 - 852752 CTTTTGT-TCCCCAGAAACTGCTCATAAATGCTGAGAATGCCAGGCTGATTCTACAAATTGACAATGCCAAGCTGGCTGCCGACGACTTCCAGGTCAAGTGAGT---GGCCCTGATCAGGGA i dasNov3.JH570468 T 12109 I 79082 a score=151665.000000 s hg38.chr17_GL383564v2_alt 23102 13 + 133151 TGGGAAGGAGCCA s panTro5.chr17 16216979 13 + 83181570 TGGGAAGGAGCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124332 13 + 83442489 TGGGAAGGAGCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959451 13 + 4267968 TGGGAAGGAGCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938846 13 - 2193130 TGGGAAGGAGCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012141 13 - 77216781 TGGGAAGGAGCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924738 13 - 80997621 TGGGAAGGAGCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981002 13 + 10377808 tgggaaggagcca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868128 13 - 8458610 TGGGAAGGAGCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824448 13 + 75148670 tgggaaggagcca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047658 13 + 4244037 tgggaaggagcca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075815 13 + 4569836 TAGGAAGGAGCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045069 13 - 159171411 TGGGGAGGAGCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767421 13 + 3513951 CAGGGAGGAGCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816879 13 + 1920343 TAGGGAGGAGCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6928183 13 - 7032639 TAGGGAGGAGCCA i aotNan1.NW_018502359v1 C 0 I 12 s proCoq1.NW_012135969v1 2936986 13 + 8555354 GGGGGAGAAGCCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22735159 7 + 28711273 GGGGGCA------ i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978139 13 - 122082543 TTGATCTGTGTCA i mm10.chr11 I 4 C 0 s canFam3.chr9 21353744 13 + 61074082 GAGGGAGGAGCCA i canFam3.chr9 C 0 C 0 e micMur3.chr16 35852911 935 - 65901067 I e dasNov3.JH570468 253886 79082 - 852752 I a score=-3127.000000 s hg38.chr17_GL383564v2_alt 23115 4 + 133151 AGTG- s panTro5.chr17 16216992 4 + 83181570 AGTG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124345 4 + 83442489 AGTG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959464 4 + 4267968 AGTG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938859 4 - 2193130 AGTG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012154 3 - 77216781 AGT-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924751 3 - 80997621 AGT-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981015 3 + 10377808 agt-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868141 3 - 8458610 AGT-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824461 3 + 75148670 agt-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047671 3 + 4244037 agt-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075828 3 + 4569836 AGT-- i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2936999 4 + 8555354 GGTG- i proCoq1.NW_012135969v1 C 0 I 528 s mm10.chr11 21978152 3 - 122082543 AAT-- i mm10.chr11 C 0 I 9 s canFam3.chr9 21353757 4 + 61074082 GGT-A i canFam3.chr9 C 0 C 0 e micMur3.chr16 35852911 935 - 65901067 I e dasNov3.JH570468 253886 79082 - 852752 I e otoGar3.GL873537 22735166 0 + 28711273 C e aotNan1.NW_018502359v1 6928196 12 - 7032639 I e cebCap1.NW_016107730v1 1816892 0 + 1920343 C e saiBol1.JH378271 1767434 0 + 3513951 C e calJac3.chr5 46045082 0 - 159171411 C a score=177322.000000 s hg38.chr17_GL383564v2_alt 23119 37 + 133151 AGAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- s panTro5.chr17 16216996 37 + 83181570 AGAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124349 37 + 83442489 AGAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959468 37 + 4267968 AGAGCTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938863 37 - 2193130 AGAGTTGGGGTTGGATGGGGATGGGACAATGCCGAGT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012157 36 - 77216781 -GAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924754 36 - 80997621 -GAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981018 36 + 10377808 -gagttggggttggatggggatgggaCAATGCCAAGT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868144 36 - 8458610 -GAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824464 36 + 75148670 -gagttggggttggatggggatgggaCAATGCCAAGT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047674 36 + 4244037 -gagttggggttggatggggatgggaCAATGCCAAGT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075831 36 + 4569836 -GAGTTGGGGTTGGATGGGGATGGGACAATGCCAAGT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045082 10 - 159171411 ---------------------------TACACCTACT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767434 10 + 3513951 ---------------------------GATACCTACT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816892 10 + 1920343 ---------------------------GGCACCTACT- i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22735166 15 + 28711273 AGAGTCAG----------------------GCCAGCT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978164 37 - 122082543 ACCTTTGGGAGCTGATGAGGAGGGAATAAAGCCAGAT- i mm10.chr11 I 9 I 135 s canFam3.chr9 21353761 7 + 61074082 -------------------------------CCTACTC i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2937003 528 + 8555354 I e micMur3.chr16 35852911 935 - 65901067 I e dasNov3.JH570468 253886 79082 - 852752 I e aotNan1.NW_018502359v1 6928196 12 - 7032639 I a score=10424.000000 s hg38.chr17_GL383564v2_alt 23156 1 + 133151 T s panTro5.chr17 16217033 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124386 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959505 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938900 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012193 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924790 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981054 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868180 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824500 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047710 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075867 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045092 1 - 159171411 T i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1767444 1 + 3513951 T i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1816902 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 I 1 s otoGar3.GL873537 22735181 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21353768 1 + 61074082 T i canFam3.chr9 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e proCoq1.NW_012135969v1 2937003 528 + 8555354 I e micMur3.chr16 35852911 935 - 65901067 I e dasNov3.JH570468 253886 79082 - 852752 I e aotNan1.NW_018502359v1 6928196 12 - 7032639 I a score=599972.000000 s hg38.chr17_GL383564v2_alt 23157 56 + 133151 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATTGACCCAGACCCCAACC--CAGT-A s panTro5.chr17 16217034 56 + 83181570 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATTGACCCAGACCCCAACC--CAGT-A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124387 56 + 83442489 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATTGACCCAGACCCCAACC--CAGT-A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959506 55 + 4267968 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATTGACCCAGACCCCAACC--CC-T-A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938901 56 - 2193130 GGCTGCTTCTGTCTCATT-------TGGCATC--AGAAGTCATTGACCCAGACCCCAAAC--CAGT-A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012194 56 - 77216781 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATCGACCCAGACCCCAACC--CAGT-A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924791 56 - 80997621 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATCGACCCAGACCCCAACC--CAGT-A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981055 56 + 10377808 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATCGACCCAGACCCCAACC--CAGT-A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868181 56 - 8458610 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATCGACCCAGACCCCAACC--CAGT-A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824501 55 + 75148670 GGCTGCTTCTGTCTCTTG-------TGGCATC--GGATGTCATTGACCCAGACCCCAACC--CAGT-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047711 56 + 4244037 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATCGACCCAGACCCCAACC--CAGT-A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075868 56 + 4569836 GGCTGCTTCTGTCTCATG-------TGGCATC--GGATGTCATTGACCCAGACCCCAACC--CAGT-A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045094 57 - 159171411 GGCTTCTTCTGTCTCATG-------TGGCATCA-GGATGTCATCGACCCAGACCCCAACC--CAAG-A i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1767446 58 + 3513951 GGCTGCTTCTGTCTCATG-------TGGCATCA-GGATGTCATCGACTCAGACCCCAACC--CAAATA i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1816904 57 + 1920343 GGCTGCTTCTGTCTCATG-------TGGCATCA-GGATGTCATCGACCCAGACCCCAACC--CAAT-A i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6928208 57 - 7032639 GGCTGCTTCTGTCTCATG-------TGGCATCA-GGATGTCATCGACCCAGAGCCCAACC--CAAT-A i aotNan1.NW_018502359v1 I 12 C 0 s otoGar3.GL873537 22735182 59 + 28711273 ACCCGGGTCTCTCTTATG-------TGCCATCA-GGATGTAATTGATCAAGACCCGACCTGATAAT-A i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21353769 65 + 61074082 GATTTCTTCTCTCTTGTGATACAGTTGGCATCAGAGATATAATTTACTAAGCTCCCAAAC--TGAC-A i canFam3.chr9 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e proCoq1.NW_012135969v1 2937003 528 + 8555354 I e micMur3.chr16 35852911 935 - 65901067 I e dasNov3.JH570468 253886 79082 - 852752 I a score=5164570.000000 s hg38.chr17_GL383564v2_alt 23213 470 + 133151 GTTATAGCAGAAGAGAACAAAGGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----GCTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagcaacttgtgaagcaggc-gggcagggatagaatctcctccacaggtggggaccc-tgaggcttggggtgctggtgtgacttgccagaagccatgtgggtaccgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTCTTGAAGCAATTTCCTGTGAAA--CTGTTGCCTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGATGAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTGAGGAGGGTCTACCCTGGGTGCTGGAAGGG-CATTGTGTTTTATCATCT s panTro5.chr17 16217090 471 + 83181570 TTTATAGCAGAAGAGAACAAAGGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----GCTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagcaacttgtgaagcaggc-gggcagggatagaatctcctccacaggtggggaccc-tgaggcttggggtgctggtgtgacttgccagaagccatgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTCTTGAAGCAATTTCCTGTGAAA--CTGTTGCCTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGATGAAAACA------TGTGGAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTGAGGAGGGTCTACCCTGGGTGCTGGAAGGGACATTGTGTTTTATCATCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124443 471 + 83442489 TTTATAGCAGAAGAGAACAAAGGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----GCTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagcaacttgtgaagcaggc-gggcagggatagaatctcctccacaggtggggaccc-tgaggcttggggtgctggtgtgacttgccagaagccatgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTCTTGAAGCAATTTCCTGTGAAA--CTGTTGCCTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAGGATGAAAACA------TGTGGAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTGAGGAGGGTCTACCCTGGGTGCTGGAAGGGACATTGTGTTTTACCATCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3959561 461 + 4267968 GTTATAGCAGAAGAGAACAAAGGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----GCTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tcc----------------------------gcaacttgtgaagcaggc--ggcagggatagcatctcctccacaggtggggaccc-caaggcttggggtgctggtgtgacttgccagaagccatgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTCTTGAAGCAATTTCCTGTGAAA--CTGTTGCCTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGATGAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTGAGGAGGGTCTACCCTGGGTTCTGGAAGGGGCATTGTATTTTATCATCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1938957 471 - 2193130 ATTACAGCAGGAGAAAACAAAGGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----GCTCTCCAGTGGTTTTGCAttaacagtttacaacatgtgctagaatgcgtca-----gccacctg--------gt-----------aagcaacttgtgaagcaggc-gggcagggatagcatctcctccacaggtggggaccc-tgaggcttggggtgctggtgtgacttgccagaagccatgtgggtactgagtggcagagctgggacttggccttaaatttCGTACCAAATTTTCCTTTCTCGAAGCAATTTCCTGTGAAA--CTGTTGCCTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTCATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGGCGAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGGGTCTACCCTGGGTGCTGGAAAGGGCATTGTGTTTTATCTTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012250 462 - 77216781 GTTACAGCAGGAGAGAACAAAAGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagaaacttgtgaagcaggg-gggcagggatagcatctcctctgcaggtggggacccttgaggctgggggtgctggtgtgacttgccaaaaatcgtgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTATTGAA--AATTTCCTGAGAAA--CTGTTGCTTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGACAAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGG--------TGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27924847 462 - 80997621 GTTACAGCAGGAGAGAACAAAAGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagaaacttgtgaagcaggg-gggcagggatagcatctcctctgcaggtggggacccttgaggctgggggtgctggtgtgacttgccaaaaatcgtgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTATTGAA--AATTTCCTGAGAAA--CTGTTGCTTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGACAAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGG--------TGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981111 470 + 10377808 GTTACAGCAGGAGAGAACAAAAGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagaaacttgtgcagcaggg-gggcagggatagcatctcctctgcaggtggggacccttgaggctgggggtgctggtgtgacttgccaaaaatcgtgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTATTGAA--AATTTCCTGAGAAA--CTGTTGCTTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGACAAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGGGTCTACCCTGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1868237 472 - 8458610 GTTACAGCAGGAGAGAACAAAAGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagaaacttgtgaagcaggg-gggcagggatagcatctcctctgcaggtggggacccttgaggctgggggtgctggtgtgacttgccaaaaaccatgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTATTGAGGCAATTTCCTGAGAAA--GTGTTGCTTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGACAAAAACA------TGTGAAGGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGGGTCTACCCTGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64824556 533 + 75148670 --------AGGAGAGAACAAAAGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccacctg--------gt-----------aagaaacttgtgaagcaggg-gggcagggatagcatctcctctgcaggtggggacccttgaggctgggggtgctggtgtgacttgccaaaaaccatgtgggtactgagtggcagagctaggacttggccttaaattttGTACCAAATTTTCCTTTCTTGAGGCAATTTCCTGAGAAA--CTGTTGCTTTAATAAGGATATGTTTCTGTGCTACAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGACAAAAACA------TGTGAAAGTCAAAGGGTTGACACCACCTAAGGAGGGTCTACCCTGGGTGCTGGAAGGGGCACAAAAACATGTGAAAGTCAAAGGGTTGACACCACCTAAGGAGGGTCTACCCTGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2047767 472 + 4244037 GTTACAGCAGGAGAGAACAAAAGGCATTAAGCTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatca-----tccatctg--------gt-----------aagaaacttgtgaagcaggg-gggcagggatagcatctcctctgcaggtggggacccttgaggctgggggtgctggtgtgacttgccaaaaaccatgtgggtactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTATTGAGGCAATTTCCTGAGAAA--CTGTTGCTTTAATAAGGATATGTTTCTGTGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTGAGACAAAAACA------TGTGAAGGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGGGTCTACCTTGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2075924 472 + 4569836 GTTACAGCACGAGAGAACAAAAGGCATTAAGTTCAAGATCCTGA-AAAACTATCC----ACTCTCcagtggtttagcattaacagtttacaacatgtgctagaatgcatcc-----tccacctg--------gt-----------aagaaacttgtgaagcaggt-gggcagggatagcatctcctttgcaggtagggacccttgaggcttggggtgctggtgtgacttgccaaaaaccatgtgcctactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTCTTGGGGCAATTTCCTGAGAAA--CTGTTGCTTTAATAAGGATACGTTTCTGTGCTGTAGCTTGATTAATTTGTGAGCGCTGATAATTCATAGCAGAAATCATGCTCCATAGCCTAAGACGAAAACA------TGTGAAAGTCAAAGGGTTGACACCA---------------------------------------------------------------------CCTAAGGAGGGTCTACCCTGGGTGCTGGAAGGGGCACTGGGTTTTATCATCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045151 454 - 159171411 GTTACAGCAGAAGAGAACAAAGGGCATTAAGCTCAAGATCTTGA-AAAACGATCT----GCTCTCCAGCGgtttagcattaacagtttataacatgtgctagaatgcatca-----tccacctg--------gt-----------aagacacttgtgaagaaggt--ggcagggatagcattttctccacaggtg-----------ggcttggggtgctggtgtgaacttccagaagccatgtgacaac--agtctcagagctgggacttggccttaaattttGTGCAAAATTTTCTTTTCTTGAGGCTATTTCCTGGGGGACTCTATTGCCTTC------ATATGTTTCTATGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATGGCAAAAATCATGCTCCATAGCCTAAAATGAAAACA------TGTGAAAACCAGAGTGTTGACTCCA---------------------------------------------------------------------CCTGAGAAGGGTCTGCCTTCAGTGCTGGAAGGGGCACTGCGTTTTATCGTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767504 457 + 3513951 GTTACAGCAGGAGAGAACAAAGGGCATTAAGCTCAAGATCTTGA-AAAACGATCT----GCTCTCcagtggtttagcattaacggtttataacatgtgctagaatgcatca-----tccacctg--------gt-----------aagatccctgtgaagcaggt-gggcaggaatagcatttcctccacaggtg-----------ggcttggggtgctggtgtgacctgccagaagccaggtgactactgagtggcagagctgggacttggccttacattttGTACAAAATTTTCCTTTCTTGAGGCTATTTCCTGGGGGACTCTATTGCCTTA------ATATGTTTCTATGCTGCAGCTTGATTAATTTGTAAGTGCTGATAATTCATTGCAAAAATCATGCTCCATAGCCTAAAATGAAAACA------TGGGAAAGCCAGAGGGTTGACACCA---------------------------------------------------------------------CCTGAGAAGGGTCTGCCCTCAGTGCTGAAATGGGCACTGTGTTTTATTATCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1816961 456 + 1920343 GTTACAGCAGGAGAGAGCAAAGGGCATGAAGCTCAAGATGTTGA-AAAACGATCT----GCTCTCcagtggtttagcattaacagtttataacatgtgctagaatgcatca-----tccacctg--------gt-----------aagacgcttgtgaagcaggt-gggcagggatagcatttcctccacaggtg-----------ggcttggggtgctggtgtgacctgccagaagccatgtgacgactgagtggcagagctgggacttggccttaaattttGTACAAAATTTTCCTTTCTTGAGGCTATTTCCTGGGGGACTCTATTGCCTTA------CTATGTGTCTATGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATTGCAAAAGTCATGCTCCAT-GCCTAAAATGAAAACA------TGTGAAAGCCAAAGGGTTGACACCA---------------------------------------------------------------------CCTGAGAAGGGTCTGCCCTCAGTGCTGGAAGGGACACTGTGTTTTGTCATCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6928265 457 - 7032639 GTTATAGCAGGAGAGAACAAAGGGCATTACGCTCAAGATCTTGA-AAAACTCTCT----GCTCTCcagtggtttagcattaacagtttgtaacatgcgctagaatgcatca-----tccacctg--------gt-----------aagacgcttgtgaagcaggt-gggcagggatagcatttcctccacaggtg-----------ggcttggggtgctggtgtgacctgccagaagccatgtgactactgagtggcagagctgggacttggccttaaattttGTACCAAATTTTCCTTTCTTGAGGCTATTTCCTGGGGGACTCTATTGCCTTA------ATATGTTTCTATGCTGCAGCTTGATTAATTTGTGAGTGCTGATAATTCATTGCAAAAATCATGCTCCATAGCCTAAAATGAAAACA------TGTGAAAGCCAAAGGGTTGATACCA---------------------------------------------------------------------CCTGAGAAGGCTCTGCACTCAGTGCTGGAAGGGGCACTGTGTTTTATCATCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22735241 431 + 28711273 GTAACAGCCAGAGAAAACAAAGGCCATTAATCCCAAGATCTTGAGAAAAAAATTT----GTTCTCCAGTTGTTTAGC-------TTTTACAACATGCTCTAGAACGCACCC-----TCCACCTGGTGTCGTTGT-----------AAGAAATGTAtgtgccaggg-aggcagggatggcatctccttcacaggtggtgatgc-tgtggctcagagtgcagaagtgactggctggaagctacatggctattgcgtgtcagaactggaatttggccctgaatttcttaccaaat------------------TTTCCTGCAAAACTTTTCTGCTTCAAAGAGGATATGCCTCTATGTTGTAGCTCGACTAATTTGTGTGTTCAGCTGATTTGAGACGGAGATCATGCTCCACGGCCTGAGATGGGGGCA------CGTGAAGGCCAAAGGGTTGATATGC-----------------------------------------------------------------------------------AGCCTGGGTGC------------TGTGCTTTATTATTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21353834 466 + 61074082 GTTACAGCAGGATAAAACAGAGGGCATTATGCCCAAGATCTTGA-AAGAACATTCCTTTGcccctcagttgtgtagcttttatgcttcacagcatgattgagaatgtatca-----tacacttg--------ctgctattgttccaaggacctggggaggtaggcagggcagtgatgtctttgtcttt----gtgaagatac--aaagctccaggccctgaagcaacctacctgaagtcatgtggctactgagtggaagaactgggacccgacctcatatttcctact-------------ctgaggtcatttcctaccaaattcagctgcctcTGTGAGGATA--TTTCCATACTGAAGCCCACCCAATTTGTGATCACCAGTAACTCACAACAAAAGTCATGCTTCATGGTCTATGATGGAGGCACCCATGTGTGAAAA-------GTTTATGCCC---------------------------------------------------------------------CCTGAGAAGG-TCAATCCTGGGAGCAGGAAGAGGCATT-TGTTTTATAGTCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 332968 464 - 852752 GTTATGGCAGGAGAAAACAAAGAGCATTAAGCTCAAGATCTGGA-AAATGCAagc----cccctccaattgtttagcttttaaagtttataacacactttagaacacattaattatcccatttg--------attccattccaggaactctcttctgaggcaggccaggcagtgaaggccccg-----------ggggacac-tg-ggttcagagttcttaagctgcttgccagaagccatgtggctactgagtggtagaa-tgggccttggccccaggtttcctacc-------------ttaagggcatttcctactaagctctgctgccccAATAAGGATATGCTTCCTCACAGCAGCTCCACTAACTCCCGAGTGCTAATAATTCACAACAGAAATCATGCTCCACTGCCCACAAGTGGGACA------CGCAGAGGCCAAAGAGTTTATACCA---------------------------------------------------------------------TTTGGGAAGGGTCTGACCTGGGAACAGAGAGGGGTATTGGGTTTTATCATCT i dasNov3.JH570468 I 79082 C 0 e mm10.chr11 21978201 135 - 122082543 I e proCoq1.NW_012135969v1 2937003 528 + 8555354 I e micMur3.chr16 35852911 935 - 65901067 I a score=515083.000000 s hg38.chr17_GL383564v2_alt 23683 39 + 133151 TTCTTCGGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT s panTro5.chr17 16217561 39 + 83181570 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124914 39 + 83442489 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960022 38 + 4267968 TTCTTCA-GGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939428 39 - 2193130 TTCTTCAGGGCAGTGTTCAAGTCTCACTCT-TCTAGAGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30012712 39 - 77216781 TTCTTCGGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i rheMac8.chr16 C 0 I 313 s macFas5.chr16 27925309 39 - 80997621 TTCTTCGGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i macFas5.chr16 C 0 I 313 s macNem1.NW_012014910v1 1981581 39 + 10377808 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i macNem1.NW_012014910v1 C 0 I 316 s cerAty1.NW_012006043v1 1868709 39 - 8458610 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i cerAty1.NW_012006043v1 C 0 I 311 s chlSab2.chr16 64825089 39 + 75148670 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048239 39 + 4244037 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076396 39 + 4569836 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-TCTAGAGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045605 33 - 159171411 TTCTTCAGGGCACTGTGCAAGTCTCACTCT-------TCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1767961 39 + 3513951 TTCTTCAGGGTACTCTGCAAGTCTCACTCT-TCTAGATCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817417 39 + 1920343 TTCTTCAGGGTACTGTGCAAGTCTCACTGT-TCTAGATCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6928722 39 - 7032639 TTCTTCAGGGCACTGTGCAAGT-TCATTATTTCTAGATCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2937531 37 + 8555354 TTCTTCAGGGCACTGTGGAAGCCTCACTAT--CTAGAG-T i proCoq1.NW_012135969v1 I 528 C 0 s otoGar3.GL873537 22735672 38 + 28711273 TTCTCCAGGGCACTGGGGAAGCCTCACTGT--CTAGAGCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354300 39 + 61074082 TTCTTCAAAATTTGGCGGAAGCCTCACTCC-TCTGGAGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333432 39 - 852752 TTCTTCAGGGCACTAAGGAAGCCTCACTCT-TCTAGAGCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e micMur3.chr16 35852911 935 - 65901067 I a score=135485.000000 s hg38.chr17_GL383564v2_alt 23722 10 + 133151 AAAGAAAGCC s panTro5.chr17 16217600 10 + 83181570 AAAGAAAGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124953 10 + 83442489 AAAGAAAGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960060 10 + 4267968 AAAGAAAGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939467 10 - 2193130 AAAGAAAGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013064 10 - 77216781 aaagaaaGCC i rheMac8.chr16 I 313 C 0 s macFas5.chr16 27925661 10 - 80997621 aaagaaaGCC i macFas5.chr16 I 313 C 0 s macNem1.NW_012014910v1 1981936 10 + 10377808 aaagaaaGCC i macNem1.NW_012014910v1 I 316 C 0 s cerAty1.NW_012006043v1 1869059 10 - 8458610 aaagaaaGCC i cerAty1.NW_012006043v1 I 311 C 0 s chlSab2.chr16 64825128 10 + 75148670 AAAGAAAGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048278 10 + 4244037 AAAGAAAGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076435 10 + 4569836 AAAGAAACCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045638 10 - 159171411 AAAGAAAGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768000 10 + 3513951 AAAGAAAGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817456 10 + 1920343 GAAGAAAGCC i cebCap1.NW_016107730v1 C 0 T 66032 s aotNan1.NW_018502359v1 6928761 10 - 7032639 AAAGAACAGC i aotNan1.NW_018502359v1 C 0 I 1 s proCoq1.NW_012135969v1 2937568 9 + 8555354 GAAGAAAGC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22735710 9 + 28711273 CAAGAAAGC- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354339 10 + 61074082 AAAGAAAGCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333471 10 - 852752 AAAGAAAGCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e micMur3.chr16 35852911 935 - 65901067 I a score=3887585.000000 s hg38.chr17_GL383564v2_alt 23732 326 + 133151 ATTTCCTTCCTCTCATGCTGGCAATGTGGCTTTTACTCTAATAGGGAATCCAGGGTCCCTTTGGGTATGG--------------------G-G------CTTGTAG-AGAGGGGC---CTGCAGTGATTGCActgtgttgcaaatgcctggttact---ttgccacctcccttttgggccat-tgtgtgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccttggttcatctcaggtgcttagtattgactgagtgGGGAACATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGATAAGCCAACTCACAATTAGATGG-CAAAGGGCAGGC s panTro5.chr17 16217610 326 + 83181570 ATTTCCTTCCTCTCATGCTGGCAATGTGGCTTTTACTCTAATAGGGAATCCAGGGTCCCTTTGGGTATGG--------------------G-G------CTTGTAG-AGAGGGGC---CTGCAGTGATTGCActgtgttgcaaatgcctggttact---ttgccacctcccttttgggccat-tgtgtgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccttggttcatctcaggtgcttagtattgactgagtgGGGAACATCCTGTTGCTTCCTGGGCTTTGAGCACACTACACAGGATAAGCCAACTCACAATTAGATGG-CAAAGGGCAGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16124963 326 + 83442489 ATTTCCTTCCTCTCATGCTGGCAATGTGGCTTTTACTCTAATAGGGAATCCAGGGTCCCTTTGGGTATGG--------------------G-G------CTTGTAG-AGAGGGGC---CTGCAGTGATTGCActgtgttgcaaatgcctggttact---ttgccacctcccttttgggccat-tgtgtgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccttggttcatctcaggtgcttagtattgactgagtgGGGAACATCCTGTTGCTTCCTGGGCTTTGAGCACACTACACAGGATAAGCCAACTCACAATTAGATGG-CAAAGGGCAGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960070 325 + 4267968 ATTTCCTTCCTCTCACGCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGGGTATGG--------------------G-G------CTTGTAG-AGAGGGGC---CTGCAGTGATTGCACtgtgttgcaaatgcctggttact---ttgccacct-ccttttgggccat-tgtgtgtgaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccAGCTGCTCCCCTTGGTTCATCTCGGGTGCTTAGTATTGACTGAGTGGGGAACATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGATAAGCCAACTCACAATTAGATGG-CAAAGGGCAGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939477 326 - 2193130 ATTTCCTTCCTCTTATGCTGGCAATGTGGCTTTTACTCTAAGAGAGAATCCAGGGTCCCTTTGGGTATGG--------------------G-G------CTTGTAG-AGAGGGGT---CTGCAGTGATTGCACCATgttgcaaatgcctggttact---ttgccacctcccttttgggccat-tgtctgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccttggttcatctcaggtgcttagtattgactgagtgaGGAACATCCTGTGGCTTTCTGGGCTTTGAGCACACTACACAGGATAAGCCAACTCACAATTAGATGG-CAAAGGGCAGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013074 327 - 77216781 ATTTCCTTCCTCTCATTCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGAGTATGG--------------------G-G------CTTGTGG-AGAGGGGT---CTGCAGTGATTCCACCGTGTTGCAAAGACCCGGTTACT---TTGCCACCTCCCTTTTGGGCCATCTGTCTGTAAAGGCAGGTGCTGGCT-GTGTGTCCATCACAGTATCCTCAGTACCAGCTGCTCCCCCTGGTTCATCTCAGGTGCTTAGTATTGACTGAGTGGGGAATATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACGATTAGACGG-CGAAGGGCAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27925671 327 - 80997621 ATTTCCTTCCTCTCATTCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGAGTATGG--------------------G-G------CTTGTGG-AGAGGGGT---CTGCAGTGATTCCActgtgttgcaaagacctggttact---ttgccacctcccttttgggccatctgtctgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccctggttcatctcaggtgcttagtaTTGACTGAGTGGGGAATATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACGATTAGACGG-CGAAGGGCAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1981946 327 + 10377808 ATTTCCTTCCTCTCATTCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGAGTATGG--------------------G-G------CTTGTGG-AGAGGGGT---CTGCAGTGATTCCACCGTGTTGCAAAGACctggttact---ttgccacctcccttttgggccatctgtctgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccctggttcatctcaggtgcttagtattgactgagtgGGGAATATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACGATTAGACGG-CGAAGGGCAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869069 328 - 8458610 ATTTCCTTCCTCTCACTCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGAGTATGG--------------------G-G------CTTGTGGAAGAGGGGT---CTGCAGTGATTCCACCGTGTTGCAAAGACctggttact---ttgccacctcccttttgggccatctgtctgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccctggttcatctcaggtgcttagtattgactgagtgGGGAATATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAACCAACTCATGATTAGACGG-CAAAGGGCAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825138 327 + 75148670 ATTTCCTTCCTCTCATTCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGAATCCCTTTGAGTATGG--------------------G-G------CTTGTGG-AGAGAGGT---CTGCAGTGATTCCACCGTGTTGCAAAGACTtggttact---ttgccacctcccttttgggccatctgtctgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccctggttcatctcaggtgcttagtaTTGACTGAGTGGGGAATATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACAATTAGGCGG-CAAAGGGCAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048288 327 + 4244037 ATTTCCTTCCTCTCACTCTGGCAATGTGGCTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGAGTATGG--------------------G-G------CTTGTGG-AGAGGGGT---CTGCAGTGATTCCACCGTGTTGCAAAGACctggttact---ttgccacctcccttttgggccatctgtctgtaaaggcaggtgctggct-gtgtgtccatcacagtatcctcagtaccagctgctccccctggttcatctcaggtgcttagtattgactgagtgGGGAATATTCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACAATTAGACGG-CAAAGGGCAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076445 327 + 4569836 ATTTCCTTCCTCTCACTCTGGCAATGTGGTTTTTACTCTAAGAGGGAATCCAGGGTCCCTTTGAGTATGG--------------------A-G------CTTGTAG-AGAGGGGT---CTGCAGTGATTGCACCGTgttgcaaatacctggttact---ttgccacttcccttttgggccatctgtctgtaaaggcaggtgctggtt-gtgtgtccaccaccgtatcctcagtaccagctgctccccctggttcatctcaggtgcttagtattgactgagtgGGGAATATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACAATTAGATGG-CAAAGGGCAGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045648 329 - 159171411 ATTTCTTTCCTCTCACTCTGGCAATGTGGTGTTTACTCCAAGAG------------------TAATGTGGGGCCAGGCAGGGGAGCCTGCG-G------GTTGTAG-AGAGGGGT---CTGTAGTGATTGCACCATATTGCAAATGCCTGGTTACT---TTGCCACCTCCTTTTTGGGCCATCTGCCTATAAAGGCAAGTGCTGGCT-GCGTGTCCATCACAGTATCCTCACTACCAGCTGCTCTACTTGGTTCATCTCAGGTGCCTAGTATTGACTGAGTGGAGAACATCCTGTTGCTTTCTGGGCTTTGAGCACACCACACAGGAAAAGCCAACTCACAATTACATGG-CAAAGGGCAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768010 338 + 3513951 ATTTCCTTCCTCTCACTCTGGCAATGTGGCTTTTACTCCAAGAGGGAATCCAGGGTCCCTTTGAATGCGGGGCC-GGCACGG--------G-G------GTTGTAG-AGAGGGGT---CTGCAGTGATTACACCATgttgcaaatgcctggttact---ttgccacctcccttttgggccatctgcctgtaaaggcaggtgctggct-gcgtgtccatcacagtatcctcagtaccagctgctctacttggttcatctcaggtgcttagtattgactgagtgGGGAACATCCTGTTGCTTTCTGGGCTTTGAGCACACTACACAGGAAAAGCCAACTCACAATTACATGG-CAAAGGGCAGGC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6928772 344 - 7032639 TTTTCCTTCCTCTCACTCTGGCAATG-GGCTTTTACTCCAGGAGGGAATCCAGGGTCCCTTTGAATGCGGGCCGGGGCGGGG--------G-GGGGGCAGTTATAG-AGAGGGGT---CTGCAGTGATTGCACCATGCTGCAAAtgcctggttact---ttgccacctcccttttgggccatctgcctgtaaaggcaggtgctggct-gcatgtccatcacagtatcctcagtgccagctgctctacttggttcatctcaggtgcttagtattgactgagtgGGGAACATCCTGTTGCTTTCTGGGCTTTGAGCACGCTACACAGGAAAAGCCAACTCACAATTACATGG-CAAAGGGCAGGC i aotNan1.NW_018502359v1 I 1 C 0 s proCoq1.NW_012135969v1 2937577 318 + 8555354 ATTTCCTTCCTCTCACTCTGGCAACGTGGCTTCTACTCTAAGAGAGAATCCAGGGTCCCTCTCAGTAGGG--------------------G-C------CTGG----AAGAGGCCACActgcactgatcacaccgtgttgccattgcctggttacg---ttgccacctcccttttgggccatcagcctgcaagggcaggtgctggct-gtgtgtccatcatggta---------ccagctgctctgcctggtttatcataggtgctcactgttgactgagtgGGGAACGTCCTGCTGCTTTCTAGGCCCTGAGCACACTGCACAGGGGAGGCCAGCTGAGACTCGGACTG-CAAAGGGCAGGC i proCoq1.NW_012135969v1 C 0 I 20 s otoGar3.GL873537 22735719 327 + 28711273 ATTTCCTTCCTCTCACTCTGGCAATGTGGCTTCTGCTCTGTCAGAGAATCCTGGGTTCCTTTCAGTAGGG--------------------A-C------TTTGGGGCAGGAGGAC---CTGTAGTGgtcacaccatgttacaattgcttggttact---ttgccacctcccttttgggccatcagtctgcaagggctggcgatggct-gtgtgtccatcacagtatcctcagtgtcagccgttctgccttgcttgtcttaggtgctcggtGTTGACCAAGCAGGGGACGTCCTGTTTGTTTCTGGGCCCTGAGCACACCACACAGGAGAAGCCAACTGAGACTTGGGCTG-CAGAGGGCAGG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354349 328 + 61074082 ATTTCCATCCTCCTATTCTGGC-CTTTGGCTTCTAATCTGAGAGAGAACCCAGAGTCTGCCTCAGTAGGG--------------------GTG------GGGGAAG-ATGAGGGT---CTGTAGGGACAACCTGGTGTGGCAATTGCCAGGTTACTCTGCTGCCACCTTCCCTTT-GGCCATAAGCCCATGAGGGCAGGTGCTGGAC-ATGTGTCTACC-CAGCACCCTCAGTACTGGCTTCTTTGTCAGGCTTGTCATTGGTGCTTAATGTCAAATGAGTGGGGAACACCCCATTGCTTTCTGGGCTGGGAGTGTGCCACATAGAAAATGCCAACTCACAATTAGACCG-AAGAAAGGTGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333481 323 - 852752 -GCTTGATTTGCCCATTTTGGCAGTTTGGCCTCTAATCTGAGAGAGAATCCAGGGTCCATTTCCATA-----------------------G-G------GTGACAG-AGGAGGGT---CTGCAGGGATCCCActggattgcaatggctctgttact---ccgctgca-ctcttttgggccatgagaccatgagagcaggtgctggctggcttgtccatcacggtatcgtcagcaccatccacttggcctggttagtcataggtgctT-GTGTTGAACCAGTGGGGAAAATCCTGTTGCTTTCTGGGCTATGAGTGCACTACATAGGAAAAGCCAACTCAAAATTAGCCTGTCAAAGGGAAGGC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e micMur3.chr16 35852911 935 - 65901067 I e cebCap1.NW_016107730v1 1817466 66032 + 1920343 T a score=308280.000000 s hg38.chr17_GL383564v2_alt 24058 31 + 133151 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA s panTro5.chr17 16217936 31 + 83181570 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125289 31 + 83442489 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960395 31 + 4267968 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939803 31 - 2193130 CAGTGGACTTACAGCTGCAAGCTGGGAGTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013401 31 - 77216781 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27925998 31 - 80997621 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982273 31 + 10377808 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869397 31 - 8458610 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825465 31 + 75148670 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048615 31 + 4244037 CAGTGGACTTACAGCTGCGAGCTGGGAGTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076772 31 + 4569836 CAATGGACTTACAGCTGCGAGCTGGGAGTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46045977 31 - 159171411 CAGCGGACTTACAGCTGTGAGCTGGGAGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768348 31 + 3513951 CAGTGGACTTACAGCTATGAGCTGGGAGTCA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6929116 31 - 7032639 CAGTGGACTTACAGCTGTGAGCTGGGAGTCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22736046 22 + 28711273 CAGAGGCCTTGTGGCT--GAGCTG------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354677 18 + 61074082 CAGTGGAGT---GGCTACCAA---------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333804 24 - 852752 CAGTGGGATAACAGCTGTAAGTTA------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e proCoq1.NW_012135969v1 2937895 20 + 8555354 I e micMur3.chr16 35852911 935 - 65901067 I e cebCap1.NW_016107730v1 1817466 66032 + 1920343 T a score=393919.000000 s hg38.chr17_GL383564v2_alt 24089 34 + 133151 TGTCCTGGTGCCCCTTCCTGCCCTCTAACTGTCA------- s panTro5.chr17 16217967 34 + 83181570 TGTCCTGGTGCCCCTTCCTGCCCTCTAACTGTCA------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125320 34 + 83442489 TGTCCTGGTGCCCCTTCCTGCCCTCTAACTGTCA------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960426 34 + 4267968 TGTCCTGGTGCCCCTTCCTGCCCTCTAACTGTCA------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939834 34 - 2193130 TGTCCTGGTGCCCCTTCCTGCTCTCTAAATGTAA------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013432 34 - 77216781 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTGA------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926029 34 - 80997621 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTGA------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982304 34 + 10377808 TGTCCTGGTGCACCTTCCTGCTCTGTAACTGTGA------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869428 34 - 8458610 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTGA------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825496 34 + 75148670 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTGA------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048646 34 + 4244037 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTGA------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076803 34 + 4569836 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTGA------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046008 34 - 159171411 TGTCCTGGTGCCCCTTCCTGCTCTCTAACTGTAA------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768379 34 + 3513951 TGTCCTGGTGCCCCTTCCTGCTCTGTAACTGTAA------- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6929147 34 - 7032639 TGTCCTGGTGCCCCTTCCTGCTCTCTAACTGTAA------- i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2937915 34 + 8555354 TGTGCTGGGGCCCCTTCCTGCTCTCTCACTCTGC------- i proCoq1.NW_012135969v1 I 20 C 0 s otoGar3.GL873537 22736068 34 + 28711273 TGTCCTGGCACCCCTTCCTGCCCCCCTGCTCCAC------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354695 32 + 61074082 TATCCTGGGGCCCCT--CTGCCCTCTAACCCTGA------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333828 40 - 852752 TGTCCTGGTAC-CTTTCCTGCTCATTTGTCCTAACTCGGCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e micMur3.chr16 35852911 935 - 65901067 I e cebCap1.NW_016107730v1 1817466 66032 + 1920343 T a score=252023.000000 s hg38.chr17_GL383564v2_alt 24123 18 + 133151 --CTCCTGCACTTTCCCTGT s panTro5.chr17 16218001 18 + 83181570 --CTCCTGCACTTTCCCTGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125354 18 + 83442489 --CTCCTGCACTTTCCCTGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960460 18 + 4267968 --CTCCTGCACTTTCCCTGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939868 18 - 2193130 --CTCCTGCACTTTCCCTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013466 18 - 77216781 --CTCCTGCACTTTCCCTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926063 18 - 80997621 --CTCCTGCACTTTCCCTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982338 18 + 10377808 --CTCCTGCACTTTCCCTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869462 18 - 8458610 --CTCCTGCACTTTCCCTGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825530 18 + 75148670 --CTCCTGCACTTTCCCTGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048680 18 + 4244037 --CTCCTGCACTTTCCCTGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076837 18 + 4569836 --CTCCTGCACTTTCCCTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046042 18 - 159171411 --CTCCTGTACCTTCCCTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768413 18 + 3513951 --CTCCTGCACCTTCCATGT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6929181 18 - 7032639 --CTCCTGCACCTTCCCTGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35853846 18 - 65901067 --CTCCTGCACCTGCCCTGT i micMur3.chr16 I 935 C 0 s proCoq1.NW_012135969v1 2937949 18 + 8555354 --CTCCCGCACCTGCCCCGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736102 18 + 28711273 --CTCCTGCATCTGCCCTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354727 18 + 61074082 --GTCCTGTATCTTTCCTGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333868 19 - 852752 ACCCTCTGT-TCTGTCCTGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978201 135 - 122082543 I e cebCap1.NW_016107730v1 1817466 66032 + 1920343 T a score=451549.000000 s hg38.chr17_GL383564v2_alt 24141 30 + 133151 TACAGGTACGAGAGAGAGCGCTCGCTGCAA s panTro5.chr17 16218019 30 + 83181570 TACAGGTACGAGACAGAGCGCTCGCTGCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125372 30 + 83442489 TATAGGTACGAGACAGAGCGCTCGCTGCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960478 30 + 4267968 TACAGGTACGAGACAGAGCGCTCGCTGCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939886 30 - 2193130 TACAGGTATGAGACAGAGCGCTCGCTGCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013484 30 - 77216781 TACAGGTATGAGACAGAGCGCTTGCTGCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926081 30 - 80997621 TACAGGTATGAGACAGAGCGCTTGCTGCAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982356 30 + 10377808 TACAGGTATGAGACAGAGCGCTTGCTGCAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869480 30 - 8458610 TACAGGTATGAGACAGAGCGCTTGCTGCAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825548 30 + 75148670 TACAGGTATGAGACAGAGCGCTTGCTGCAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048698 30 + 4244037 TACAGGTATGAGACAGAGTGCTTGCTGCAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076855 30 + 4569836 TACAGGTATGAGACAGAGCGCTCGCTGCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046060 30 - 159171411 TATAGGTACGAGACAGAGCACTGGCTGCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768431 30 + 3513951 TACAGGTACGAGACAGAGCACTGGCTGCAC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6929199 30 - 7032639 TACAGGTACCAGACAGAGCACTGGCTGCAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35853864 30 - 65901067 TACAGGTATGAGACAGAGCGCTCTCTGCAC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2937967 30 + 8555354 TACAGGTATGAGACGGAGCGCTCGCTGCAC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736120 30 + 28711273 TACAGGTTCGAGACAGAGCACTCACTGCAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978336 30 - 122082543 TGTAGGTATGAGACGGAGTTGTCCCTGCGA i mm10.chr11 I 135 C 0 s canFam3.chr9 21354745 30 + 61074082 TAAAGGTACCAGACAGAGCATTCACTCTGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333887 30 - 852752 TCAAGGTACGAGAGGGAGCACTCACTCCGT i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1817466 66032 + 1920343 T a score=1974626.000000 s hg38.chr17_GL383564v2_alt 24171 104 + 133151 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTAGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAGGAGCT s panTro5.chr17 16218049 104 + 83181570 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCACCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAGGAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125402 104 + 83442489 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAGGAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960508 104 + 4267968 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAGGAGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1939916 104 - 2193130 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013514 104 - 77216781 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926111 104 - 80997621 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982386 104 + 10377808 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869510 104 - 8458610 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825578 104 + 75148670 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048728 104 + 4244037 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076885 104 + 4569836 CAGCTGGTGGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046090 104 - 159171411 CAGCTGGTGGAGGCTTACATCTGTGGCCTGCACAGGGTGCTGGACAACCTCACCCTCGCCAAGCGTGACCTGGAGGCCCAGCTGGAATCCCTGAAGGAAGAGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768461 104 + 3513951 CAGCTGGTGGAGGCTGACCTCTGTGGCCTGCACAGGGTGCTGGACAACCTCACCCTTGCCAAATGTGACCCGGAGGCCCAGCTGGAATCCCTGAAGGAAGAGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1751434 104 + 1920343 CAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGACCTGACTCTGTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCT i cebCap1.NW_016107730v1 T 66032 I 65928 s aotNan1.NW_018502359v1 6929229 104 - 7032639 CAGCTGGTAGAGGCTGACATCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTCGCCAAGTGTGACCTGGAGGCCCAGCTGGAATCCCTGAAGGAAGAGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35853894 104 - 65901067 CAGCTGGTGGAGGCCGATGTCTGTGGCCTGCGCAAAGTGCTGGACAACCTCACCCTGGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2937997 104 + 8555354 CAGCTGGTGGAGGCCGATGTTTGTGGCCTGCGCAAGATGCTGGACAACCTCACCCTGGCCAAGTGTGACCTGGAGGCCCAGCTGGAGTCCCTGAAGGAAGAGCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736150 104 + 28711273 CAGCTGGTGGAGGCTGACGTCTGTGGCCTGCGCAGGGTGCTGGACAACCTCACCCTGGCCAAGTGTGACCTGGAGGCGCAGCTGGAGTCCCTGAAGGAAGAGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978366 104 - 122082543 CAGCTGGTAGAGGCTGACATCAATGGTCTACGCCGGATCTTGGATGAGCTGACCTTGTGTAAGGCTGACCTGGAGGCACAGGTTGAGTCCCTGAAGGAGGAGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21354775 104 + 61074082 CAGCTGGGGGAAGCTGACATTTGCGGCCTGCGCAGGATGTTGGATGACCTTACACTTGCCAAGTGCGACCTGGAGGCCCAGCTGGAGTCCCTCAAGGAGGAGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 333917 103 - 852752 CAGCGGGCAGAGGCTGCCATCTGCGGCCTGCACGGGGC-TTGGGAGATCTCACGCTGACCAAGTGTGACTTGGAGGCCCACCTGGAGCCCCTGAAGAAGGAGCT i dasNov3.JH570468 C 0 C 0 a score=703311.000000 s hg38.chr17_GL383564v2_alt 24275 43 + 133151 GCTTTGCCTCAAGAAGAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGG s panTro5.chr17 16218153 43 + 83181570 GCTTTGCCTCAAGAAGAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125506 43 + 83442489 GCTTTGCCTCAAGAAGAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960612 43 + 4267968 GCTTTGCCTCAAGAAGAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940020 43 - 2193130 GCTTTGCCTCAAGAAGAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013618 43 - 77216781 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926215 43 - 80997621 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCCTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982490 43 + 10377808 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCCTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869614 43 - 8458610 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825682 43 + 75148670 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048832 43 + 4244037 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2076989 43 + 4569836 GCTTTGCCTCAAGAAAAACCATGAGCAGGTGTG--------------------------------------------------TGACCCTTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046194 43 - 159171411 ACTTTGCCTCAAGAAGAACCACGAGCAGGTGTA--------------------------------------------------TGGCCCTTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768565 43 + 3513951 GCTTTGCCTCAAGAAGAACCACGAGCAGGTGTA--------------------------------------------------TGGCCCTTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817466 42 + 1920343 GCTTTGCCTCAAGAAGAACCACAAGT-GGTGTA--------------------------------------------------TGGCCCTTGG i cebCap1.NW_016107730v1 I 65928 C 0 s aotNan1.NW_018502359v1 6929333 43 - 7032639 GCTTTGCCTCAAGAAGAACCACTAGCAGGTGTA--------------------------------------------------TGGCCCTTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35853998 43 - 65901067 GCTCTGTCTCAAGAAGAACCATGAGCAGGTAGA--------------------------------------------------GGACACTTGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2938101 43 + 8555354 GCTCTGTCTCAAGAAGAACCATGAACAGGTACG--------------------------------------------------GGACACTTGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736254 43 + 28711273 GCTGTGCCTCAAGAAGAGCCACGAGCAGGTGAG--------------------------------------------------GGACACTTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 21978470 93 - 122082543 GCTGTGTCTCAAGAGGAACCATGAAGAGGTGAGGTTGCTGCCACGTGATCCCCGGGGTTCCCATCCCACTGAGGAATCCCTGCTGGCCCTTGG i mm10.chr11 C 0 I 45547 s canFam3.chr9 21354879 42 + 61074082 GCTCTGCCTTAAGAAGAACCATGAGCAGGTGCG--------------------------------------------------TGGCCTTTG- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334020 43 - 852752 GCTCTGTCTCCAGAAGAACCACGAGCAGGTGTC--------------------------------------------------TGGCCCCTTC i dasNov3.JH570468 C 0 C 0 a score=1684552.000000 s hg38.chr17_GL383564v2_alt 24318 137 + 133151 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGGG----AAAAAACGGAG-GCTTCCTTCTG----------CTTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCATCCACAGCTT s panTro5.chr17 16218196 137 + 83181570 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGGG----AAAAAACGGAG-GCTTCCTTCTG----------CTTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTCCTTCTCATCCACAGCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125549 137 + 83442489 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGGG----AAAAAACGGAG-GCTTCCTTCTG----------CTTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTCCTTCTCATCCACAGCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960655 141 + 4267968 TGTGATGCATTAAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGGAGGGCGGGGAACGGAG-GCTTCCTTCTG----------CTTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCATCCACAGCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940063 137 - 2193130 CGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGGA----GAAAAACGGAG-GCTTCCTTCTG----------CTTGAGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCATCCACACCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013661 136 - 77216781 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGG-----AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCATCCACAGCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926258 136 - 80997621 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGG-----AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCGTCCACAGCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982533 136 + 10377808 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGG-----AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTAC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCGTCCACAGCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869657 136 - 8458610 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGG-----AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCGTCCACAGCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825725 136 + 75148670 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGG-----AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCGTCCACAGCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2048875 136 + 4244037 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATCTGGGGG-----AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTTGTCCACAGCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077032 138 + 4569836 TGTGATGTATTGAG---ACGTTC-TGGAGGTGAATTCAGGCTCATCTGGGGGGA---AAAAAATGGAG-GCTTCCTTCTG----------CCTGGGATTGAAGCTTTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTCTCGTCCACAGCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046237 134 - 159171411 TGTGATACATTGAG---ACTTTC-TGGAGGTGAATTCAGGCTCATTCAGGGGA----AAAAA---TAG-TTTTCCTTCTG----------CTTGGGAGTGAAGCTCTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTTTTATCCACAGCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768608 137 + 3513951 TGTGATGCATTGAG---ACTTTC-TGGAGGTGAATTTAGGCTCATTCAGGGAA----AAAAAATGGAG-TCTTCCTTCTG----------CTTGGGATTGAAGCTCTGC------------------------------------AAG---------TGAGCTCTGGCTCTTCGTG-GGAGATTGCTTTTTATCCACAGCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817508 136 + 1920343 TGTGATGCATCGAG---ACTTTC-TGGAGGTGAATTTAGGCTCATTCAGGGGA----AAAAA-TGGAG-TCTTCCTTCTT----------CTTGGGATTGAAGCTGTGC------------------------------------AGG---------TGAGCTCTGGCTTTTGGTG-GGAGATTGCTTTTCATCCACAGCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6929376 132 - 7032639 T-TGATGCATCGAG---ACTTTC-TGGAGGTGAATTCAGG-TCATTCAGGGAG----AAAAAATGGAG-TCTTCCTTCTG----------CTTGGGAT--AAGCTCTGC------------------------------------AGG---------T-AGCTCTGGCTTTTGGTG-GGAGTTTGCTTTTCATCCACAGCCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35854041 132 - 65901067 TGAGATGCCATGAG---ACATTC-TAG-GGTGAAGTCAGGCTCCTTTGGGGG-----GAGAAAT-GAG-GCTTCCTCCTG----------CTCCAGGTGGAAGCTTTG-------------------------------------GGG---------TGAGCTCTGGCATCCAGGG--GGGCTTGCTCTTCATGTAAAGCCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2938144 132 + 8555354 TGTGATGTCATGAG---ACATTC-TAG-GGTGAACTCGGGCTCATTTCGGGG-----GAGAAAT-GAG-GCTTCCTCCTG-----------TCCAGGTGGAAGCTGTG-------------------------------------GCG---------TGAGCTCTGGCATTCAGGG-AGAGGTTGCTCTTCATGTAAAGCCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736297 133 + 28711273 TATGATGCCATGAG---ACATTC-TGG-GGTGAGCTCAGGCTCTTCTAGGGA-----GAAGAGC-AAG-GCTTCCTCCTG----------CGGTAGGTGGAAGCTGCG-------------------------------------AAA---------TGCGCACTGGTGTTTGGTG-GGGGGCTGCTCTTCATGCAGAGCCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21354921 165 + 61074082 --------TGTAAG---ATTTTCTTGGGGGTAAGTTCAGGCTCATTTGGGGG-----AAGAAATGAAGCTCTTCCTCCTG----------CTCAGGATGGAAGCTCTGTAGGCCCTGCCTCATGGTTAAGGCTCACAAGCTATAGAGG---------TAAGCTCCAGCTTTCAGTG-GGAACTTGCTCTTCAT-TGCAACCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334063 133 - 852752 AGTGACACATTGAGGTCACTTTG-CGG------------------------------AAGAAAC-GAG-GCTCCCTCCGGCAGGCCCCATCCTCGTGATGGAGCCTCAC------------------------------------AAGCCGGGACCATGAGCTCCAGCTTTCAGTGAGGAGGGGGCCCTTCACTCACAGCAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 21978563 45547 - 122082543 I a score=4172813.000000 s hg38.chr17_GL383564v2_alt 24455 272 + 133151 CTGGAAGCTGCTAGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTT----GGGGGCCCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCACACTCTAAGGGGTCAGCTGGGAGACAAGCTCCGGATAGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGAGTTCTGGGGGAGAC-GTGAGGCCAGTACGAGGCCATGGTGGAG s panTro5.chr17 16218333 272 + 83181570 CTGGAAGCTGCTAGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTT----GGGGGCCCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCACACTCTAAGGGGTCAGCTGGGAGACAAGCTTCGGATAGAGCTGGACATTGAGCCCACCACTGATGTGAGTAGGGTTCTGGGGGAGAC-GCGAGGCCAGTACGAGGCCATGGTGGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125686 272 + 83442489 CTGGAAGCTGCTAGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTT----GGGGGCCCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCACACTCTAAGGGGTCAGCTGGGAGACAAGCTTCGGATAGAGCTGGACATTGAGCCCACCATTGACGTGAGTAGGGTTCTGGGGGAGAC-GCGAGGCCAGTACGAGGCCATGGTGGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3960796 272 + 4267968 CTGGAAGCTGCTAGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGCAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTAGGTGAAGGGCAGTT----GGGGGCCCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCACACTCTAAGGGGTCAGCTGGGAGACAAGCTCCGGATAGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGGGTTCTGGGGGAGAC-GCGAGGCCAGTACGAGGCCATGGTGGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940200 272 - 2193130 CTGGAAGCTGCTGGGCT-------GGTGAAGGCAGTGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGgggaggatggaaagtgggagttgagagtttgggcgaagggcagtt----gggGGCCCTGCAGGCGGG-------TCATACTCCTCTGATGCCTATAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATCGAGCTGGACATTGAGCCCACCACTGACCTGAGTAGGGTTCTGGGGGAGAT-GCGAGGCCAGTACGAGGCCATGGTGGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30013797 279 - 77216781 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGGGCTCTGCAGACGGGTCATACTTCATACTCCTCTGATGCCTACAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926394 279 - 80997621 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGGGCTCTGCAGACGGGTCATACTTCATACTCCTCTGATGCCTACAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982669 279 + 10377808 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGGGCTCTGCAGGCAGGTCATACTTCATACTCCTCTGATGCCTACAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAACAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1869793 272 - 8458610 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGGGATCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATTGAGCTGGATATTGAGCCCACCATTGACCTGAGTAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64825861 272 + 75148670 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCGGTTTATCGTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGGGCTCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCACACTCTGAGGGGTCAGCTGGGAGACAAGCTCTGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049011 272 + 4244037 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGGGGAGGATGGAAGGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGGGCTCTGCAGGCGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077170 272 + 4569836 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGTGGTTTATCTTCAGAGGAGCACAGGGAAATTACTGAGGAGGATAGAAAGTGGGAGTTGAGAGTTTGGGTGAAGGGCAGTG----GGGTACTCTGCAGGTGGG-------TCATACTCCTCTGATGCCTACAGGAAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCCGGATTGAGCTGGACATTGAGCCCACCATTGACCTGAGTAGGGTGCTGGGGGAGAT-GCGAGGCCAGTATGAGGCCATGGTGGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046371 275 - 159171411 CCGGAAGCTGCTGGGCT-------GGTGCAGGCAGCAGTTCATCTTCAGAGGAGCACAGGGAAATCACTGGGGAGGATGGGAAGTGGGAGTTGAGAGTCTGGGTGAAGGGCAGTGTGTGGTGGGGGCTACA-GGACA-------TCATACTCCTCTGATGACCACAGAAAGCCCACACTCTGAGGGGTCAGCTGGGAGATAAGCTCTGGATCAAGCTGGACATCAAGCCCACCACTGACCTGAGCAGGGTGCTGGGGGAGAT-GCGAGGTCAGTACAAGGCCATGGTGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1768745 276 + 3513951 CCGGAAGCTGCTGGGCT-------GGTGCAGGCAGCAGTTCATCTTCAGAGGAGCACAGGGAAATCACTGGGGAGGATGGGAAGTGGGAGCTGAGAGTTTGGGTGGAGGGCAGTGGTGGGGGGTGGCTACAGGGGCA-------TCATACTCCTCTGATGACCACAGGAAGCCTGCACTCCGAGGGGTCAGCTGGGAGACAAGCTCTGGATCAAGCTGGACATCGAG-CCACCACTGACCTGAGCAGGGTGCTGGGGGAGATGGCGAGGTCAATACGAGGCCAGGGTGGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817644 273 + 1920343 CTGGAAGCTGCTGGGCT-------GGTGCAGGCAGCAGTTCATCTTCAGAGGAGCACAGGGAAATCACTGGGGAGGATGGGAAGTGGGAGTTGAGAGTTTGGGTGGAGGGCAGTA---GGGGGAGGCTACAGGGGCA-------TCATACTCCTCTGATGACCACAGGTAGCCCGCACTCTGAGGGGTCAGCTGGGAGACAAGCTCTGGATCAAGCTAGATATCGAGCCCACCACTGACCTGAGCAGGGTGCTGGGGGAGAT-GTGAGGTCAGTACGAGGCCATGGTGGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6929508 269 - 7032639 C--GAAGCTGCTGGGCT-------GGTGCAGGCAGGAGTTCATCTTCAGAGGAGCACAGGGAAATCACTGGGGAGGATGGGAAGTGGGAGTTGAGAGTTTGGGTGGAGGGCAGTG-----CGGGGGCTACAGGGGCA-------TCATACTCCTCTGATGACCACAGGAAGCCCACGCTCTGAGGGCTCAGCTGGGAGACAAGCTCTGGATCACGCTGGACATCGAGCCTACCACTGACCTAAGCAGGGTGCTGGGGGAGAT-GCGGGATCAGTACGGGGCCATGGTGGAA i aotNan1.NW_018502359v1 C 0 I 11 s micMur3.chr16 35854173 270 - 65901067 CTGGACGCTGCTGGGCC-------GGTGCAGGCCGCGGCTCATCTTCAGAGGAGCACAGGGAAGTGGCTGGGGAGGGCAGGCTGCGGGAGCTGAGGCTC-GGGTGCAGGACAGTG-----GGGGCTCCACGAGGGCT-------TCATCCTCCTCCTATGCCCACAGGAAGCCCAGATTCTGAAGTGCCAGCTGGAGGACAAGCTCCGGATTGAGCTGGACACGGAACCCCACCTGGACCTGAGCAGGGAGCTGGGGGAGAT-GCGGTGCCAGTACGAGGCCATGGTGGAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2938276 271 + 8555354 CTGGAAACTGCTGGGCT-------GGTGCAGGCAGCGGCTCACCTTCAGAGGAGCACAGGGAAGTGGCTGGGGAGGACAGGCTGTGGGAGCTGAGGCTCTGGGTGCAGGGCAGTG-----GGGACTCCACGAGTGCT-------TCATCCTCCTCCAATGCCCATAGGAAGCCCAGATTCTGAGGTGTCAGCTGGGGGACAAGCTCCGGATTGAGCTGGACACGGAGTCCCCCACAGACCTGAGCAGGGTGCTGGGGGAGAT-GCGGTGCCAGTACGAGGCCATGGTGGAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736430 265 + 28711273 CT-GAAACTGCTGGGCT-------GGCATGGGCA-CCGTTCATCTTTGGAGGGGCACAGGGAAATGGCTAGGGAGGACA-ACTG-GGGGCCTGGGGCTCTGGGTGCGGGGCAGTA-----GGGGCTCTGCAAGTGCT-------TA--CCTCCCACTGTGTCCACAGGAGGCCCAGACTCTGAGGAGTCAGCTGGGCGACAAGCTCCGGATTGAACTGGATACTGAGCCCACTGTGGATCTGAGCCGGGTGCTGGGTGAGAT-GAGATGTCAGTATGAGACTATGGTGGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024110 261 - 122082543 CTGGAGTCTGCTGGGGTGGGGGTGGGGGCAGGCAGTGCTCCATCC----GAGAGCCCAGAGAAGACAGTGCGGAACACAGTGAATGGGAGCTGAGGCTCCGAGTGGAGGATAACA----AGAGTCCCTG--AGTATG-------TCACCCTTCTCCTGAGCCCACATGAAATATGGTTTTTGC-TTGTCAGCTGG-----------TAGGTTGAATTGAACCCTGAGTCTGCTGTGAATCTCAATAGGATGCTGGAGGAGAC-ATGGCATTAGAATGGGACTCTGGTGGAC i mm10.chr11 I 45547 C 0 s canFam3.chr9 21355086 271 + 61074082 CTGGAAGTTGCTACGCT-------AATGCAGGTGGTGCCCCATCCTCGGAGGAGCACAGAGAAATCACTGGGGAGAATGGGAAGTGGGAGATGAGGCTTTGGGTAGAGGGCAGTG-----GGGGTTCCACGAATGGG-------ATGTCTTTCTCCTGTCCCCAAAGGAAGTCCACATCCTTAAGTGCCAGCTGGGAGATAAGCTCCAGATTAAGCTGGATGTTGAGCCCACCGTGGACCTGGGCAGGGTGCTGGAGGACAT-GAGGTGCCACTATGAGGCCATGGTGCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334196 263 - 852752 CTGGAAGCTGCTGGA-T-------GCTTCTGCCAGTGCCTCGTCCTCAGACGGGCACAGGGGAATGGCTGGGGAGGATGGAGAATGGGAGCTGAGGCTCTGAGTGGAGGGAAATG-----GGGGTTCCATGAGAGGG-------CCATCCTCCATCTATGCACACAGGAAGTCCACACCCTGAGG-------TGGGAGACAAGCTCTGGATTGAGCTGGACACCGAGCCCACTGTGGACCTGAGCAGGGTGTTGGGGGAGCT-GCGGTGCCTATATGAGGGCATGGTGGAG i dasNov3.JH570468 C 0 C 0 a score=143359.000000 s hg38.chr17_GL383564v2_alt 24727 9 + 133151 ACCAATCGC s panTro5.chr17 16218605 9 + 83181570 ACCAATCGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125958 9 + 83442489 ACCAATCGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961068 9 + 4267968 ACCAATCGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940472 9 - 2193130 ACCAATCGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014076 9 - 77216781 ACCAACCGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926673 9 - 80997621 ACCAACCGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982948 9 + 10377808 ACCAACCGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870065 9 - 8458610 ACCAACCGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826133 9 + 75148670 ACCAACCGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049283 9 + 4244037 ACCAACCGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077442 9 + 4569836 ACCAACCGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046646 9 - 159171411 ACCAACCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769021 9 + 3513951 ACCAACCAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817917 9 + 1920343 ACCAACCAC i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35854443 9 - 65901067 ACCAACCGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2938547 9 + 8555354 ACCAACCGC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22736695 9 + 28711273 ACCAACCGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024371 9 - 122082543 ATCTGCCAT i mm10.chr11 C 0 C 0 s canFam3.chr9 21355357 9 + 61074082 ACCAGCCGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334459 9 - 852752 ACCAGCCGC i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6929777 11 - 7032639 I a score=728465.000000 s hg38.chr17_GL383564v2_alt 24736 37 + 133151 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- s panTro5.chr17 16218614 37 + 83181570 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16125967 37 + 83442489 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961077 37 + 4267968 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940481 37 - 2193130 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014085 37 - 77216781 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926682 37 - 80997621 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982957 37 + 10377808 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870074 37 - 8458610 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826142 37 + 75148670 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049292 37 + 4244037 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077451 37 + 4569836 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046655 37 - 159171411 CAGGATGTGGAGCGGTGGTTCCAAGCCCAGGTGAGGG-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769030 37 + 3513951 CAGGATGTGGAACAGTGGTTCCAAGCCCAGGTGACGG-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817926 37 + 1920343 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6929788 37 - 7032639 CAGGATGTGGGGCAGTGTTTCCAAGCCCAGGTGAGGG-- i aotNan1.NW_018502359v1 I 11 C 0 s micMur3.chr16 35854452 37 - 65901067 CAGGACGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i micMur3.chr16 C 0 I 33 s proCoq1.NW_012135969v1 2938556 37 + 8555354 CAGGATGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i proCoq1.NW_012135969v1 C 0 T 25448 s otoGar3.GL873537 22736704 37 + 28711273 CAGGACGTGGAGCAGTGGTTCCAAGCCCAGGTGAGGG-- i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22024380 37 - 122082543 CAGGAGGTGCAACAGTGGCTCTAAACCCAGGCAAGAG-- i mm10.chr11 C 0 I 2 s canFam3.chr9 21355366 37 + 61074082 AATGATGTGGAAGAGTGGTTCCAAGATCAGGTGAGGG-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334468 39 - 852752 CAGGATGTGGAGCAGGGGTTCTAGGCCCAGATGAGGATG i dasNov3.JH570468 C 0 C 0 a score=339266.000000 s hg38.chr17_GL383564v2_alt 24773 30 + 133151 GGACTGCTAAGCAGTGGGGA------TTGGCCTCCA s panTro5.chr17 16218651 30 + 83181570 GGACTGCTAAGCAGCGGGGA------TTGGCCTCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126004 30 + 83442489 GGACTGCTAAGCAGCGGGGA------TTGGCCTCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961114 30 + 4267968 GGACTGCTAAGCAGCAGGGA------TTGGCCTCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940518 30 - 2193130 GGACTGCTAAGCAGCGGGGA------TTGGCCTCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014122 30 - 77216781 GGACTGCTAAGCAGTGGGGA------TTGGCCTCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926719 30 - 80997621 GGACTGCTAAGCAGTGGGGA------TTGGCCTCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1982994 30 + 10377808 GGACTGCTAAGCAGTGGGGA------TTGGCCTCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870111 30 - 8458610 GGACTGCTAAGCAATGGGGA------TTGGCCTCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826179 30 + 75148670 GGACTGCTAAGCAGTGGGGA------TTGGCCTCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049329 30 + 4244037 GGACTGCTAAGCAGTGGGGA------TTGGCCTCTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077488 30 + 4569836 GGACTGCTAAGTAGTGGGGA------TTGGCCTCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046692 30 - 159171411 GCACTGCTGAGCTTTGGGGA------TTGGCTTCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769067 30 + 3513951 GCACTGCTGAGCTGTGGGGA------TTGGCTTCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817963 30 + 1920343 GCACTGCTGAGCTGTGGGGA------TTGGCCTCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6929825 29 - 7032639 GCACTGCCGAGCTGT-GGGA------CTGGCTTCCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2913145 30 + 8555354 GGGCTGCCCAGCAGGAGGAA------CTGGGCTCCA i proCoq1.NW_012135969v1 T 25448 C 0 s otoGar3.GL873537 22736742 30 + 28711273 GGGCTACCCAGCAGGGGGGA------CCTGGCTTCT i otoGar3.GL873537 I 1 I 1 s mm10.chr11 22024419 26 - 122082543 GTGCTGCAGATCAGGGAGG----------GCCCCTG i mm10.chr11 I 2 I 2 s canFam3.chr9 21355403 35 + 61074082 -TGCTGCCTCGGAGCAGGGAGGGACCCGGGCTTCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334507 33 - 852752 GTGCTGCAGGGCAGCAGAGA---GCCCCGGCTTTCA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35854489 33 - 65901067 I a score=370478.000000 s hg38.chr17_GL383564v2_alt 24803 27 + 133151 TCTGGG-CAGGTAGGTGACCATGTTTCT s panTro5.chr17 16218681 27 + 83181570 TCTGGG-CAGGTAGGTGACCATGTTTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126034 27 + 83442489 TCTGGG-CAGGTAGGTGACCATGTTTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961144 27 + 4267968 TCTGGG-CAGGTAGGTGACCATGTTTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940548 27 - 2193130 TCTGGG-CAGGCAGGTGACCGTGTCTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014152 27 - 77216781 TCTGGG-CAGGGAGGTGACCGTGTCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926749 27 - 80997621 TCTGGG-CAGGGAGGTGACCGTGTCTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983024 27 + 10377808 TCTGGG-CAGGGAGGTGACCGTGTCTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870141 27 - 8458610 TCTGGG-CAGGTAGGTGACCGTGTCTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826209 27 + 75148670 TCTGGG-CAGGTAGGTGACCGTGTCTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049359 27 + 4244037 TCTGGG-CAGGTAGGTGACCGTGTCTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077518 27 + 4569836 TCTGGG-CAGGCAGGTGACCGTGTCTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046722 27 - 159171411 TCTGGG-CAGGGAGGTGGCTATGCCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769097 27 + 3513951 TCTGAG-CAGGGAGGTGGCTATGCCTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1817993 27 + 1920343 TCTGGG-CAGGGAGGTGGCTATGCCTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6929854 27 - 7032639 TCTGGG-CAGGGAGGTGGCTATGCCTCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35854522 28 - 65901067 TCTGGGTCAGGGAGCTGACCATGTCATT i micMur3.chr16 I 33 I 7 s proCoq1.NW_012135969v1 2913175 27 + 8555354 TCTGGG-CAGGGAGGTGACTGTGTCTGT i proCoq1.NW_012135969v1 C 0 I 25458 s otoGar3.GL873537 22736773 24 + 28711273 TCTGGG-CAGGGAGGTGAC-GTGTAC-- i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22024447 24 - 122082543 TCTGCC-TTG---GATCACCGTGTGGCC i mm10.chr11 I 2 I 2 s canFam3.chr9 21355438 27 + 61074082 CACGGG-CAGGCTGCTGATCATGTCTCT i canFam3.chr9 C 0 I 6 s dasNov3.JH570468 334540 28 - 852752 TCTGGGCCAGGGAGGTGGTCTTGTCTTT i dasNov3.JH570468 C 0 I 8 a score=3597242.000000 s hg38.chr17_GL383564v2_alt 24830 217 + 133151 CTATGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCTGAGGAGCTGCAGTGCTGCCAGTCAGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACACTGGTGAGT-CCCTCTGCACGCATGGGAGACCCAGC-TTGGCTCCCACTACC-CATGAGTAGCTCT-CTGGGGTCAGTACAGGCCTC s panTro5.chr17 16218708 217 + 83181570 CTATGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCTGAGGAGCTGCAGTGCTGCCAGTCAGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACACTGGTGAGT-CCCTCTGCACGCATGGGAGACCCAGC-TTGGCTCCCACTACC-CATGAGTAGCTCT-CTGGGGTCAGTACAGGCCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126061 217 + 83442489 CTATGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCTGAGGAGCTGCAGTGCTGCCAGTCAGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACACTGGTGAGT-CCCTCTGCACGCATGGGAGACCCAGC-TTGGCTCCCACTACC-CATGAGTAGCTCT-CTGGGGTCAGTACAGGCCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961171 217 + 4267968 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCAGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACACTGGTGAGT-CCCTCTGCACGCATGGGAGACCCAGC-TTGGCTCCCACTGCC-CATGAGTAGCTCT-CTGGGGTCAGTACAGGCCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940575 217 - 2193130 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCAGAGATCCTGGAGTTGAGACGCTCGGTAAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTGAGT-CCCTCTGCACGCATGGGAGACCAAGT-GTGGCTCCCACTACC-CAGGAGTAGCTCT-CTGGGGTCAGTACAGGCCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014179 217 - 77216781 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTGAGT-CCCTCTGTATGCACGGGAGACCCAGC-ATGGCTCTCACTACC-CATGAGCAGCTCT-CTAGGGTCAGTACAGGCCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926776 217 - 80997621 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTGAGT-CCCTCTGTATGCATGGGAGACCCAGC-TTGGCTCTCACTACC-CATGAGCAGCTCT-CTAGGGTCAGTACAGGCCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983051 217 + 10377808 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACACTGGTGAGT-CCCTCTGTATGCACGGGAGACCCAGC-GTGGCTCTCACTACC-CATGAGCAGCTCT-CTAGGGTCAGTACAGGCCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870168 217 - 8458610 CCGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTGAGT-CCCTCTGTATGCATGGGAGACCCAGC-TTGGCTCTCACTACC-CATGAGCAGCTCT-CTAGGGTCAGTACAGGCCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826236 217 + 75148670 CCGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTAAGT-CCCTCTGTATGCATGGGAGACCCAGC-TTGGCTCTCACTACC-CATGAGCAGCTCT-CTAGGGTCAGTACAGGCCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049386 217 + 4244037 CCGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTGAGT-CCCTCTGTATGCATAGGAGACCCAGC-TTGGCTCTCACTACC-CATGAGCAGCTCT-CTAGGGTCAGTACAGGCCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077545 217 + 4569836 CTGTGCTCCAGTCTGAAGGCATCAGTCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGTTGAGACGCTCGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACACGCTGGTGAGT-CCCTCTGTATGCATGGGAGACCCAGC-TTGGCTCTCACTGCC-CATGAGCAGCTCT-CTGGGGTCAGTACAGGCCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046749 217 - 159171411 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCTATGTCCGGCTCCGAGGAGCTGCAGTGCAGCCAGTTGGAGATCCTGGAGCTGGGATGCTCGGGGAACGACCTGG-AGGTGGAGTTTCAGGCTCAGCACATACTGTTGAGT-CCCTCTGCACATGTGGGAGACACAGC-TTGGCTCCCACTACC-CATGAGCAGTTCT-CTGGGGTCAGTACAGGCCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769124 217 + 3513951 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCGGGCTCTGTCGGGCTCTGAGGAACTGCAGTGCTTCCAGTTGGAGATCCTGGAGCTGAGACGCTCGGTGAATGCCCTGG-AGGTGGAGCTTCAGGCTCAGCACATACCGTTGAGT-CCCTCTGCACATGTGGGAAACACAGC-TTGGCTTCCAGTACC-CATGAGCAGTTCT-CTGGGATCAGTACAGGCCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818020 217 + 1920343 CTGTGCTCTAGTCTGAAGGCATCAGCCTGCAGGCTATGTCTGGCTCCAAGGAGCTGCAGTGCTGCCAGTTGGAGATCCTGGAGCTGAGACGCATGGTGAACGCCCTGG-AGGTGGGGCTTCAGGCTCAGCACATACTGTTGAGT-CCCTCTGCACATGTGGGAGACACAGC-TTGGCTCCCACTACC-CATGAGCAGTTCT-CTGGGGTCAGCACAGGCCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6929881 212 - 7032639 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGACCATGTCTGGCTCTGAGGAGCTGCAGTGCTGCCAGTTGG-GATCCTGGAGCTGAGACGCTC-GTGAACGCCCTGG-AGGTGGAGCTT-AAGCTCAGCACATACTGTTGAGT-CC--CTGCACATGTGAGAGACACAGCTTTGGCTCCCACTA-C-CATGAGCAGCTCT-CTGGGGTCAGTACAGCCCGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35854557 216 - 65901067 CTGTGCCCCAGTCCGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCTTGGAGCTGAGACGCTCAGTGAACGCCCTGG-AGGTGGAGCTGCAGGCGCAGCACGCGCTGGTGAGT-CCCTGTGCATGCGTGGGAGACTCAGC-TGGGCTC-CATTTCC-CGTGAGCAGGTCC-CTGGGGTCAGTACAGGTCTC i micMur3.chr16 I 7 I 643 s proCoq1.NW_012135969v1 2938660 215 + 8555354 CTGTGCTCCAGTCTGAAGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAGGAGCTGCAGTGCTGCCAGTCGGAGATCTTGGAGCTGAGACGCTCAGTGAACGCCCTGG-AGGTGGAGCTACAGGCGCAGCACGCGCTGGTGAGT--CCTGCGCATGCGTGGGTGACACAGC-TTGGCTC-CATTTCC-CATGAGTGGTTCC-CATGGGTCAGTACAGGCCTC i proCoq1.NW_012135969v1 I 25458 I 660 s otoGar3.GL873537 22736797 216 + 28711273 TTATGCCACAGTCTGAGGGCATCAGCCTGCAGGCCATGTCCTGCTCCGAAGAGCTGCAGTGCTGCCAGTCGGAGATCCTGGAGCTGAGGCGCTCGGTGAACACCCTGG-AGGTGGAGCGCCAGGCCCAGCATGCGCTGGTGAGT-CCCTCTGCACACGTGGATGCTAC-GC-TGGGCTC-CATTTCC-CACTAGAGGTTCCACCGGAGTCAGTACAGCCCTC i otoGar3.GL873537 C 0 I 4 s mm10.chr11 22024473 182 - 122082543 GCATGCTTCACTCTGAAG-------------------------------------GCCGTACTGCCTGTTATTAATCCTGGAACTGAGATCCATGCCAAACCCCCAGGCATGTGCAGTTCTGATCTCAGCACATGCTGGTAAGT-TCCTTTGTAAATAGAGAAGACTTGGC-TTGATCGTTTTTGCTGCAGGAGCAGCATC-CTGGGCTCAGTATAAGCTTC i mm10.chr11 I 2 C 0 s canFam3.chr9 21355471 214 + 61074082 TTGTGCTTCAGTCTGAGAGCATCAGCCAGCAGGACATGTCCTGCTCTGAGGAGTTGCGGTGCTGCCAGTCGGAGATCCTGGAGCTGAGACGCACGGTGAACGCCCTGG-AGGTGGAGCTTCAGGCCCAGCACACGCTGGTGAGC-TCCTTTGCACACCTGGAAGACTCAGC-CTGGTTCCCATT-CC-CAAGAGCAGTTCC-T--GGTTCAGTCCCTGCCTC i canFam3.chr9 I 6 I 4 s dasNov3.JH570468 334576 216 - 852752 TTGTGCTTCAGTCTGAAGGCATCAGCCTGCAGTTTATGTCCTGCTCCGAGGAGCTGCGGGGCTGCCAGCTGGAGATCCTAGAGCTGGGACGTGTGGTGAACGCCCTGG-AGGTCGAGCTGCAGACCCAGCACAAGCTGGTGGGTTTCCTTTGCATGCGTGGAAAACTCAGC-TTGACTTCCACTTCC-CACAGACAGTT---CTGCATTCAATACATGGCTC i dasNov3.JH570468 I 8 I 6 a score=852551.000000 s hg38.chr17_GL383564v2_alt 25047 72 + 133151 GAATACCAACCACGGACTCAGCTTAAACCTTGGTTTCAACTCTTTTGG-AAGCACTTCCCTGTAGATGTGGAT s panTro5.chr17 16218925 72 + 83181570 GAATACCAACCACGGACTCAGCTTAAACCTTGGTTTCAACTCTTTTGG-AAGCACTTCCCTGTAGATGTGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126278 72 + 83442489 GAATACCAACCACGGACTCAGCTTAAACCTTGGTTTCAACTCTTTTGG-AAGCACTTCCCTGTAGATGTGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961388 72 + 4267968 GAATACTAACCACGGACTCAGCTTAAACCTTGGTTTCAACTCTTTTGG-AAGCACTTCCCTGTAGATGTGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940792 72 - 2193130 AAATACCAATCACGGACTCAGCTTAAACCTTGGTTTCAACTCTTTTGG-AAGCACTTCCCTGTAGATGTGGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014396 72 - 77216781 AAACACCAACCACGGACTCAGCTTAAACCTTGGTTTCATCTCTTTTTT-AAGCACTTCCCTGTAGATGTGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27926993 72 - 80997621 AAACACCAACCACGGACTCAGCTTAAACCTTGGTTTCATCTCTTTTTT-AAGCACTTCCCTGTAGATGTGGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983268 72 + 10377808 AAACACCAACCACGGACTCAGCTTAAACCTTGGTTTCATCTCTTTTTT-AAGCACTTCCTTGTAGATGTGGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870385 72 - 8458610 AAACACCAACCACGGACTCAGCTTAAACCTTGGTTTCATCTCTTTTTT-AAGCACTTCCCTGTAGATGTGGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826453 72 + 75148670 AAACACCAACCACGGACTCAGCTTAAACCTTGGTTTCATCTGTTTTTT-AAGCACTTCCCTGTAGATGTGGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049603 73 + 4244037 AAACACCAACCACGGACTCAGCTTAAACTTTGGTTTCATCTCTTTTTTAAAGCACTTCCCTGTAGATGTGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077762 72 + 4569836 AAATACCAACCACGGACTCAGCTTAAACCTTGATTTCATCTCTTTTTT-AAGCACTTCCCTGTAGATGTGGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46046966 72 - 159171411 AAATACCAACCACAGACTCAGCTTAAACCTTGGTTTCGTCTCCTTTGG-AAGCACTTTCTTGTAGATGTGGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769341 72 + 3513951 AAATACCAACCACAGACTCAGCTTAAACCTTGATTTCATCTCCTTTGG-AAGCACTTTCTTTTAGATGTGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818237 72 + 1920343 AAATACCAACCACAGACTCAGCTTAAACCTTGGTTTCGTCTCCTTTGG-AAGCACTTTCTTGTAGATGTGGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930093 70 - 7032639 -AATACCAAACACAGACTCAG-TTAAGCCTTGGTTTCATCTCCTTTGG-AAGCACTTTCTTGTAGATGTGGAT i aotNan1.NW_018502359v1 C 0 I 24 s otoGar3.GL873537 22737017 55 + 28711273 AAACACCGACCAGGGACACA--CAGAACTTTGG----------------AAGAGCTTTCCCATAGTCATGGGT i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22024655 68 - 122082543 --ACAGAAACCA-AGACACAGCACCA-TCTTGCCTGCATCTCCTTTGG-AAGGACTTTCTCCTGGAGGCAGGA i mm10.chr11 C 0 I 7 s canFam3.chr9 21355689 71 + 61074082 AAGTACAGACCA-GGACACAGTTCAAACCTTGAGTTCCTTGCCTTTGC-AAGAACTTTCTCATAGATGTGGCT i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 334798 72 - 852752 ACACACAGACCAGGGACACAGCTTAAACCATGACTTGTTCTCCTTTGG-AAGAACTTTCTTATAGGTACAGAT i dasNov3.JH570468 I 6 C 0 e proCoq1.NW_012135969v1 2938875 660 + 8555354 I e micMur3.chr16 35854773 643 - 65901067 I a score=30958.000000 s hg38.chr17_GL383564v2_alt 25119 3 + 133151 GCT s panTro5.chr17 16218997 3 + 83181570 GCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126350 3 + 83442489 GCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961460 3 + 4267968 GCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940864 3 - 2193130 GCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014468 3 - 77216781 GTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927065 3 - 80997621 GTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983340 3 + 10377808 GTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870457 3 - 8458610 GTT i cerAty1.NW_012006043v1 C 0 I 319 s chlSab2.chr16 64826525 3 + 75148670 ATT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049676 3 + 4244037 GTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077834 3 + 4569836 GTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047038 3 - 159171411 GCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769413 3 + 3513951 GCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818309 3 + 1920343 GCT i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22737072 3 + 28711273 GCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024730 3 - 122082543 GGT i mm10.chr11 I 7 C 0 s canFam3.chr9 21355760 3 + 61074082 GCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334870 3 - 852752 GCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938875 660 + 8555354 I e micMur3.chr16 35854773 643 - 65901067 I e aotNan1.NW_018502359v1 6930163 24 - 7032639 I a score=206879.000000 s hg38.chr17_GL383564v2_alt 25122 24 + 133151 GAGTGAATCAACATTAACTTAGGT s panTro5.chr17 16219000 24 + 83181570 GAGTGAATCAACATTAACTCAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126353 24 + 83442489 GAGTGAATCAACATTAACTCAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961463 24 + 4267968 GAGTGAATCAACATTAACTCAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940867 24 - 2193130 GAGTGAATCAACATTAACTCAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014471 24 - 77216781 GAGTGAATCAATATTAACTCAGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927068 24 - 80997621 GAGTGAATCAATATTAACTCAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983343 24 + 10377808 GAGTGAATCAATATTAACTCAGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870779 24 - 8458610 GAGTGAATCAATATTAATTCAGGT i cerAty1.NW_012006043v1 I 319 C 0 s chlSab2.chr16 64826528 24 + 75148670 GAGTGAATCAACATTAACTCAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049679 24 + 4244037 GAGTGAATCAACATTAACTCAGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077837 13 + 4569836 GAGTGAA-----------TCAGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047041 24 - 159171411 GAGTCAAtcaacattaacacagga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769416 24 + 3513951 GAGTCCAtcaacattaacacaggg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818312 24 + 1920343 GAGTCAATCAACATTAACGAAGGA i cebCap1.NW_016107730v1 C 0 C 0 s otoGar3.GL873537 22737075 23 + 28711273 GAGTGAGGGAACATTAACCTGGT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024733 24 - 122082543 GAATGGGTGGACATGAAGCCAAGT i mm10.chr11 C 0 I 2 s canFam3.chr9 21355763 24 + 61074082 GAGGGAATGAACATTCCTTCAGAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334873 24 - 852752 GAACCAATGAAGGCTAACCAAATG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938875 660 + 8555354 I e micMur3.chr16 35854773 643 - 65901067 I e aotNan1.NW_018502359v1 6930163 24 - 7032639 I a score=1355857.000000 s hg38.chr17_GL383564v2_alt 25146 132 + 133151 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------TGTGTTAGTTA-TTCT---GGCT--GAAGACAGCT-AAAGGGAGTTAGATTGCTCT-CTGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTG---------GAGAT s panTro5.chr17 16219024 132 + 83181570 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------TGTGTTAGTTA-TTCT---GGCT--GAAGACAGCT-AAAGGGAGTTAGATTGCTCT-CTGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTG---------GAGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126377 132 + 83442489 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------TGTGTTAGTTA-TTCT---GGCT--GAAGACAGCT-AAAGGGAGTTAGATTGCTCT-CTGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTG---------GAGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961487 132 + 4267968 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAA-----------TGTGTTAGTTA-TTCT---GGCT--GAAGACAGCT-AAAGGGAGTTAGATTGCTCT-CTGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTG---------GAGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1940891 132 - 2193130 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------AGTGTTAGTTA-TTCT---GGCT--GAAGACAGCT-AAAGGGAGTTAGATTGCTCT-CTGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTG---------GAGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014495 138 - 77216781 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------AGTGTTAGTTA-TTCT---GGCC--CAGGACAGCT-AAAGGGAGTTAGATTGCCCT-ATGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTGGAGGC---AGAGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927092 138 - 80997621 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------AGTGTTAGTTA-TTCT---GGCC--CAGGACAGCT-AAAGGGAGTTAGATTGCCCT-ATGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTGGAGGC---AGAGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983367 138 + 10377808 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------AGTGTTAGTTA-TTCT---GGCC--GAGGACAGCT-AAAGGGAGTTAGATTGCCCT-ATGGACCTGGCAATGTCTTGGGGTGTCACAGTC--TT-------A----AGAGGTTGGAGGC---AGAGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870803 138 - 8458610 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCACGAAG-----------AGTGTTAGTTA-TTCT---GACC--GAGGACAGCT-AAAGGGAGTTAGATTGCACT-ATGGACCTGGCAGTGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTGGAGGC---AGAGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826552 138 + 75148670 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------AGTGTTAGTTA-TTCT---GGCT--GAGGACAGCT-AAAGGGAGTTAGATTGCCCT-CTGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTGGAGGC---AGAGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049703 140 + 4244037 CAGAG---GGCTCTG--------ATCTTATAAAGGTCTA-CCACGAAG-----------AGTGTTAGTTA-TTCT---GGCC--GAGGACAGCT-AAAGGGAGTTAGATTGCACT-ATGGACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTGGAGGC---AGAGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077850 138 + 4569836 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTA-CCATGAAG-----------AGTGTTAGTTA-TTCT---GGCT--GAGGACAGCT-AAAGGGAGTTAGATTGCCCT-CTGTACCTGGCAATGTCTTGGGGTGTCACAATC--TT-------A----AGAGGTTGGAGGC---AGAGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047065 149 - 159171411 cagag---ggctctg--------actt--tcaaggtcta-ccacgaagatcagtagcacagtGTTAGTTC-TTCT---GGCT--GAAGACAGCT-AAAGGCTGTTAGATTGCTCT-CTGGACCTGGCCATGTCTTGGGGTGTCAGGATC--TT-------G----AGAGGTTGGAAGC---AGAGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769440 146 + 3513951 cagag---ggctctg--------atct--taaaggtcta-ccaggaagagcagtagcacagtGTTAG----TTCT---GGCT--GAAGACAGCT-AAAGGCTGTTAGATTGCTCT-CTGGACCTGGCCATGTCTAGGGGTGTCACGATC--TT-------A----AGAGGTTGGAAGC---AGAGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818336 149 + 1920343 CAGAG---GGCTCTG--------ATCT--TAAATGTCTA-CCATGAAGAGCAGTAGCACAGTGTTAGTTC-TTCT---GGCT--GAAGACAGTT-AAAGGCTGTTAGATTGCTCT-CTGGACCTGGCCATGTCTAGGGGTGTCACGATC--TT-------A----AGAGGTTGGAAGC---AGAGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930187 154 - 7032639 CAGAG---GGCTCTG--------ATCT--TAAAGGTCTATCCATGAAG-GCAGTAGCACAG-GTTAGTTCTTTCT---GGCCTGAAAGACAGCTAAAAGGCTGTTAG-TTGCTCTCCTGGACCTGA-CATCTCTAGGGGTGTCACGATC--TT-------A----GAGGTTTGGAATCAAGAGGATC i aotNan1.NW_018502359v1 I 24 C 0 s otoGar3.GL873537 22737098 151 + 28711273 GAGTG---GGCTTTGCAAAGGGAATCT--TGCAGGTCTG-TGAGGACA-GGCACAGCTTAGTGCTAGTTC-TCCC---TGCT--GGTGGCTGCC-AGAGGGAGCAAAG--GCTCT-CTGGACCCAGCAATGTCTTGGGGTGTCACAGCT--TTACT---GA----AGAGGTTCAAGG---------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024759 140 - 122082543 TGGAG---GGGATGG-----GGGAAGC--TAGAGACTGA-CAAAGAAA-----------AACCATTGATG-TTCTTGCAGCT--GGAGACTGCT-AATAGGTGTTGGCTTCTTCT-CTGGGTCTGGAAATGTCTCAGGGCCCTGTGGTTTATT-------G----AAGGGTTGGAGGT--------- i mm10.chr11 I 2 I 4 s canFam3.chr9 21355787 159 + 61074082 --GAGCGAGGTCCTG-CAAATTTATCC--T-GAGGTCTA-CAATGATGAGCAATGGCACGTCATTAGTTC-TTCC---AGCT--GAGGAGTGCT-AACAGGAGCTAGGTTGTTCT-CCAGGCCTGGCAACACCTTGGGGTGTCACAGTC--TT-------ACTGGAGAGACTGGGGCT---GCAGT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 334897 160 - 852752 AGGGA---GGCTCTG-CAGACTTACCT--TCAA-GTCTA-TGTTGAAGAGCAGTAACACATTGTTAGTTC-TTTA---AACT--GAAGACTGCT-AATGGG-GTTGCATC-TTCT-CCGAGCCTGGCAATATCTTGGAGTGTCATGGTC--TTACTCACAA----TAGGGCTTAGGGC---AGGAAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2938875 660 + 8555354 I e micMur3.chr16 35854773 643 - 65901067 I a score=294783.000000 s hg38.chr17_GL383564v2_alt 25278 23 + 133151 CCATGATTTTTAA--CTTGCTTCCT s panTro5.chr17 16219156 23 + 83181570 CCATGATTTTTAA--CTTGCTTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126509 23 + 83442489 CCATGATTTTTAA--CTTGCTTCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961619 23 + 4267968 CCATGATTTTTAA--CTTGCTTCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941023 23 - 2193130 CCATGATTTTTAA--CTTGCTTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014633 23 - 77216781 CCATGAGTTTTAA--CTTGTTTCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927230 23 - 80997621 CCATGAGTTTTAA--CTTGTTTCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983505 23 + 10377808 CCATGAGTTTTAA--CTTGTTTCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870941 23 - 8458610 CCATGAGTTTTAA--CTTGTTTCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826690 23 + 75148670 CCATGATTTTTAA--CTTGTTTCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049843 23 + 4244037 CCATGAGTTTTAA--CTAGTTTCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2077988 23 + 4569836 CCATGATTTTTAA--CTTGTTTCCG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047214 23 - 159171411 CCATGGTTTTTAA--CTTGCTTCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769586 23 + 3513951 CCATGATTTTTAA--CTTGTTTCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818485 23 + 1920343 CCATGATTTTTAA--CTTGCATCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930341 23 - 7032639 CCATGATTTTTAA--CTTGCTTCCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2939535 23 + 8555354 CCATGATTTTTAA--CCTGCTTCTG i proCoq1.NW_012135969v1 I 660 C 0 s otoGar3.GL873537 22737249 22 + 28711273 -CAGGGATTTTAA--CCCACATCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024903 23 - 122082543 GGAGGATCCTTAA--CCAGCTTCTC i mm10.chr11 I 4 C 0 s canFam3.chr9 21355946 21 + 61074082 CCACGATTTTCCA--TCTGGTTC-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335057 25 - 852752 CCATGATTTTTAAAGCCTACTGCTC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35854773 643 - 65901067 I a score=2943272.000000 s hg38.chr17_GL383564v2_alt 25301 189 + 133151 CCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCCGAGGACCGCTACCGC-ACAGAGCTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGATGTGAAGGCCCGGCT s panTro5.chr17 16219179 189 + 83181570 CCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCCGAGGACCGCTACGGC-ACAGAGCTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCTGACCTGGAGCGGCAGAACCAGGAGTACG--AGGTGCTGCT-GGATGTGAAGGCACGGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126532 189 + 83442489 CCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCCGAGGACCGCTACGGC-ACAGAGCTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGATGTGAAGGCACGGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961642 189 + 4267968 CCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCCGAGGACCGCTACTGC-ACAGAGCTGGCCCAGATGCAGAGCTTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGATGTGAAGGCCTGGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941046 189 - 2193130 CCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCCGAGGACCGCTATGGC-ACAGAGCTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTCCGGGCCCGGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014656 189 - 77216781 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCTGAGGACCGCTACGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927253 189 - 80997621 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCTGAGGACCGCTACGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983528 189 + 10377808 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCTGAGGACCGCTACGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1870964 189 - 8458610 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCTGAGGACCGCTACGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826713 189 + 75148670 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCTGAGGACCGCTACGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2049866 189 + 4244037 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCTGAGGACCGCTACGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAACAGCTGTCTGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078011 189 + 4569836 TCTTTC--TTTGATATTATAGAAG-GACTGTCTACAGAACTCCCTGTGTGAAGCCGAGGACCGCTTCGGC-ACAGAACTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------ACAATGTGGAGGAGCAGCTGTCTGAGATCCGGGCCGATATGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGTCCGGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047237 203 - 159171411 CCTTTC--TTTGATATCACAGAAG-GACTGTCTGCAGAACGCTCTATGTGAAGCCGGGGACCACTACGGC-ATGGAGCTGGCCCAGATGCAGAGCCTCATCAGCACTGTGGAGGAGCAGC-------------------------------------------------------------------------------------------------------------------------TGTGGAGGTGCAGCTGTCCGAGATCCAGGCTGATCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGATGTGAAGGCCCGGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769609 261 + 3513951 CCTTTC--TTTGATATCACAGAAG-GACTGTCTGCAGAACGCCCTGTGTGAAGCCGGGCACCGCTATGGC-ATGGAGCTGGCCCAGATGCAGGGCCTCATCAGCACTGTGGAGGGGCAGCTGT---------------------------------------------------------------GGAGGAGCCGCATCAACAATGTGGAGGAGCAGCTGTGGAGGAGCCTCATCAACAATGTCGAGGAGCAGCTGTCCGAGATCCAGGCTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCCGGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818508 258 + 1920343 CCTTTC--TTTGATATCAC---AG-GACTGTCTGCAGAACGCCCTGTGTGAAGCTGGGGACCGCTACCGC-ACGGAGCTGGCCCAGATGCAGAGCCTCATCAGCACTGTGGAGGAGCAGCTGT---------------------GGAGGAGC----CTCATCAACAATGTGGAGGAGCAGCTGTGGA--------------------------------------GGGGCCTCATCAACAATGTGGAGGAGCAGCTGTCTGAGATCCAGGCTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTGAAGGCCGGGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930364 257 - 7032639 CCTTTTCATTTGATATCATAGAAGAGACTGTCT-CAGAACACCCTGTTTG-AGCTGGGG-CCGCTACGGCTACGGAGCTGG-CCAGATGCAGAG-CTCATCAGCACTGTGGAGGAG-AGCTGTGGAGGCCTCATCAAGCACTGTGGAGGAGCGCTGTGGA-----------------------------------------------------------------GGAGCCTCATC-ACAATGTCGAGGAGCAGCTGTCTGAGATCCA-GCTGACCTGGAGCGGAGAAACCAGGAGTACCTAAGGTGCTGCTGGGATGTG-AGGCCCGGCT i aotNan1.NW_018502359v1 C 0 I 24 s micMur3.chr16 35855416 189 - 65901067 CCTTTC--TTTGGTACCACAGAAG-GACTGCCTGCAGAACTCCCTGTGCGAGGCCGAGGCCCGCTATGGC-ACGGAGCTGGCCCAGATGCAGACCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------GCAACATGGAGGAGCAGCTGTCCGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTCAAGGCCCAGCT i micMur3.chr16 I 643 C 0 s proCoq1.NW_012135969v1 2939558 189 + 8555354 CCTTTC--CGTGGTACTGCAGAAG-GACTGCCTGCAGAACTCCCTGTGCGAGGCCGAGGACCGCTACGGC-ACCGAGCTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------GCAACGTGGAGGAGCAGCTGTCCGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACGTCAAGGCCCGGCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22737271 189 + 28711273 CCCTTT--CTTGGCACTGCAGAAG-GACTGCCTGCAGAACTCCCTGTGTGAAGCCGAGGCCCGCTACGGC-ACAGAGCTGGCCCAGATGCAGAGCCTCATCA---------------------------------------------------------------------------------------------------------------------------------------GCAACGTGGAAGAGCAGCTGTCCGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACATCAAGGCCCGGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22024926 131 - 122082543 ----TG--TTTCCTATGTGAGAAG------------------CCTGTGTGCAGCCGAGG-CCTTTGTAGC-CTTGTACTGACCTATATGCCAAGTCCCACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCCA-------CTAGAGC---AGGAACATGAGTATC--GGGTGTTGCC-GG-CATTAAGGTCGGGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21355967 187 + 61074082 --TGTC--TTTGGTATTACAGAAA-GACTGTCTGCAGAACTCACTGTGTGAAGCCGATGCCCGTTTTGGC-ACGGAGCTGGCGCAGATGCAGATCCTGATCA---------------------------------------------------------------------------------------------------------------------------------------GCAACGTGGAGGAGCAGCTGTCTGAGATCCGGGGTGACCTGGAGCGGCAGAACCAGGAGTACC--AGGTGCTGCT-GGACATTAAGGCTCGGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335082 188 - 852752 CCTTTC--TTTGATATTACAGAAA-GACAATCTGCAGAGCTCCCTGTGTGACTCTGAGGCCTGCTATGGC-ACC-TGCTGGCCCAGATGCAGGGCATGATAG---------------------------------------------------------------------------------------------------------------------------------------AAAAGGTGTAGGAGCAGCTGGCAGGGGTCCAGGCTGACCTAGAGGGGTAGAACCAGGAGTACC--AGGTGCTGTT-GGACGTCAGGGCCCAGCT i dasNov3.JH570468 C 0 C 0 a score=282719.000000 s hg38.chr17_GL383564v2_alt 25490 22 + 133151 GCAGAATGAGATTGCCACATAC s panTro5.chr17 16219368 22 + 83181570 GGAGAATGAGATTGTCACATAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126721 22 + 83442489 GGAGAATGAGATTGCCACATAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961831 22 + 4267968 GGAGAATGAGATTGCCACATAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941235 22 - 2193130 GGAGGGCGAGATCAACACGTAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014845 22 - 77216781 GGAGAATGAGATTGCCACATAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927442 22 - 80997621 GGAGAATGAGATTGCCACATAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983717 22 + 10377808 GGAGAATGAGATTGCCACATAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871153 22 - 8458610 GGAGAATGAGATTGCCACGTAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826902 22 + 75148670 GGAGAATGAGATTGCCACGTAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050055 22 + 4244037 GGAGAATGAGATTGCCACGTAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078200 22 + 4569836 GGAGAATGAGATTGCCACGTAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047440 22 - 159171411 GGAGAACGAGATTGCCACATAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769870 22 + 3513951 GGAGAACGAGATTGCCACATAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818766 22 + 1920343 GAAGAACGAGACTGCCACATAC i cebCap1.NW_016107730v1 C 0 C 0 s micMur3.chr16 35855605 22 - 65901067 GGAGTGTGAGATCAACACGTAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2939747 22 + 8555354 GGAGTGTGAGATCAACACGTAC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22737460 22 + 28711273 GGAGGACGAGATCAACACGTAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025057 21 - 122082543 -TCTGGCAAGATTATCATATGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21356154 22 + 61074082 GGAGTGTGAGATCAACACATAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335270 21 - 852752 GGAGGGGGAGATCAACATGTC- i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6930621 24 - 7032639 I a score=1737211.000000 s hg38.chr17_GL383564v2_alt 25512 114 + 133151 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTACGTACCCTGTTG-T---CTATGTCAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC s panTro5.chr17 16219390 117 + 83181570 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTACGTACCCTGTTG-TTGTCTATGTCAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126743 117 + 83442489 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTACGTACCCTGTTG-TTGTCTATGTCAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961853 117 + 4267968 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTACGTACCCTGTTG-TTGTCTATGTCAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941257 116 - 2193130 CGGAGCCTGCTGGAGAGCGAGGACTGC-AAGTACGCACCCTGTTG-TTGTCTATGTCATCACTGCCTGC-AAACCAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014867 117 - 77216781 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTATGTGCCCTATTG-TTGTCTATGTTAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927464 117 - 80997621 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTATGTGCCCTATTG-TTGTCTATGTTAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983739 117 + 10377808 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTATGTGCCCTATTG-TTGTCTATGTTAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871175 117 - 8458610 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTATGTGCCCTATTG-TTGTCTATGTTAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64826924 117 + 75148670 CGGAACCTTCTGGAGAGCGAGGACTGC-AAGTATGTGCCCTGTTG-TTGTCTATGTCAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGGAGGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050077 117 + 4244037 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTATGTGCCCTATTG-TTGTCTATGTTAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACTTAAAAGGAGCTCTGGAGGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078222 117 + 4569836 CGGAACCTTCTGGAGAGTGAGGACTGC-AAGTATGTGCCCTGTTG-TTGTCTATGTCAACACCGTGTGCAAAAACAGATAACTTCTCTTGGGAATGACCTAAAAGGAGCTCTGAAGGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047462 111 - 159171411 TGGAACCTTCTGGAGAGTGAGGACTGC-AAGTACGTATCCTGTTA-TTGTCTATGTCAACAC--TGGGCAA----AGAGAACTTCTCTTGGGAATAACCTAAAAGGAGCTCTGGAGGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1769892 113 + 3513951 CGGAACCTTCTGGAGAGCGAGGAGTGC-AATTACGTGTCCTGTTG-TTGTCTATGTCAACACTGTGTGCAA----AGAGAACTTCTCTTGGGAATAACCTAAAAGGAGCTCTGGAGGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818788 111 + 1920343 TGGAACCTTCTGGAGAGTGAGGACTGC-AAGTACGTATCCTGTTG-GTGTCTATGTCAACAC--TGTGCAA----AGAGAACTTCTCTTGGGAATAACCTGAAAGGAGCTCTGGAGGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930645 114 - 7032639 CAGAACCTTCTGGAAGCGAGGGACTGCAAAGTACGTATCCTGTTGTTTGTCTA-GTCAACACTGTGTGCAA----AGAGAACTTCTCTTGGGAATAACCTAAACAGAGCTCTGGAGGGC i aotNan1.NW_018502359v1 I 24 C 0 s micMur3.chr16 35855627 117 - 65901067 CGGAAACTTCTAGAGAGCGAGGACTGC-AAGTACGTAACTTCTTG-CTGTCTGTATCAACACCATGTGCAAAAGCAGAGACCTTTGTTTGGGAATGACCTAAATGGAGCCCTGGAGGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2939769 117 + 8555354 CGGAACCTTCTAGAGAGCGAGGACTGC-AAGTACGCACCCTCTTG-TTGTCTGTATCAACACCATGTGCAAAAGCAGACACCTTTTATTGAGAATGACCTAAAAGGAGCCCTGGAGGCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22737482 116 + 28711273 CGGAAACTTCTGGAGAGCGAGGACTGC-AAGTAGGTGCCTTGTGG-TTGTCTGTATCAATACCACTTGCAAAAGTAGAGACCTTTTATTGGGAATGAACTACA-GGAGCCCTGGAGGCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025078 113 - 122082543 CAGACACTCCTGGATAGTGAGGTTTGC-CAAAACACACCTGGATA-CTGTTT-CAACAATATTAAGTATGATAGCAGAGA---TTTCTTGAGAGTGACTTTAAAGGAGCCCTGGGTACC i mm10.chr11 C 0 I 2 s canFam3.chr9 21356176 109 + 61074082 CGGAAACTTCTGGAGAGCGAGGACTGC-AAGTGTGTACCCTGATG-TT---TGTGCCAATGTCATGTGTAAAAGCAGAGACCTTTTGTGGGGAG-GATTTGAAAGGAG----GGATGTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335291 117 - 852752 TAGAACTTTCTGGAGAGCAAGAACTGT-AACTACACACCCTGACA-TTGTCTGTGCCAAAGCCACGTGTAAAAGCCGAGATTCCTTATTGGTTCTGACCTAAGAGGAGCCCAGGAGGCC i dasNov3.JH570468 C 0 C 0 a score=1938525.000000 s hg38.chr17_GL383564v2_alt 25626 139 + 133151 AGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CACTAGGCCTGGTGAGCTAATGCCTGCCTAGGCGTAGGTGAGGGTGTACAGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACCACGTTG s panTro5.chr17 16219507 138 + 83181570 AGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGCCAAACTTGCTAC-CACTAGGCCTGGTGAGCTAATGCCTGCCTAGGCGTAGGTGAGGGTGTACAGGAG--TTTTCAGGTCATGGCA-TTTGTTTT-CTGACCACGTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126860 138 + 83442489 AGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGCCAAACTTGCTAC-CACTAGGCCTGGTGAGCTAATGCCTGCCTAGGCGTAGGTGAGGGTGTACAGGAG--TTTTCAGGTCATGGCA-TTTGTTTT-CTGACCACGTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3961970 139 + 4267968 AGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CACTAGGCCTGGTGAGCTAATGCCTGCCTAGGCGTAGGTGAGGGCGTACAGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACCACGTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941373 139 - 2193130 AGGTGGGGGTGGCATTGCAGGTCCCATCTTTGGAGACAAACTTGCTAC-CACTAGGCCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTATGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACCACGTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30014984 139 - 77216781 TGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTGCGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACAACGTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927581 139 - 80997621 TGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTGCGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACAACGTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983856 139 + 10377808 TGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTGCGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACAACGTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871292 139 - 8458610 TGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCGAATGCCTGCCTAGACGTAGATGAGGGTGTGCGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACAACGTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827041 139 + 75148670 TGGTGGGGGAAGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCGAATGCCTGCCTAGACGTAGATGAGGGTGTTCGGGAG--TTTTCAGGTGACGGCA-TTTGTTTTGCTGACCATGTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050194 139 + 4244037 TGGTGGGGGTGGCATTGCCAATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTGCGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACAACGTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078339 139 + 4569836 TGGTGGGGGTGGCATTGCAGATCCCATCTTTGGAGACAAACTTGCTAC-CAGTAGGCCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTGCGGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACCACGTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047573 139 - 159171411 AGCTGGGGGTGGCATTGCAGATGCCATCTTTGGAGACAAACTTGCTAC-GAGTAGACTTGGTGAGCTCATGCCTGCCTAGATGTAGATGAGGGTGTGCAGGAG--TTTTCAGGTCTTGGCA-TTTGTTTTGCTGACCATGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770005 139 + 3513951 AGCTGGGGGCGGCATTGCAGACGCCATCGCTGGAGACAAACTTGCTAC-GAGTAGACCTGGTGAGCTGATGCCTGCCTAGACGTAGATGAGGGTGTGCAGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACCACGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1818899 137 + 1920343 AGCTGGGGGTGGCATTGCAGATGCCATCTTTGGAGACAAACTTGCTAC-GAGTAGACCTGGTAAGCTAATGCCTGCCTAGATGTAGATGAGG--GTGCAGGAG--TTTTCAGGTCATGGCA-TTTGTTTTGCTGACCACGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930759 139 - 7032639 AGCTGGGGGTGGCATTGCAGATGACATCTCTGGAGACAAACTTGCTAC-GAGTAGACCTGGTGAGCTAATGCCTGCCTAGACGTAGATGAGGGTGTGCAGGAG---TTTCAGGTCATGGCATTTTGTTTTGCTGACCACGCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35855744 140 - 65901067 AGCTGGGGGTGGCATTGCAGAACCCATCTTTGGGGACAAACTTGCTACCCAGTAGTTCTGGTGAGCTTACATCTGCCCGGACACAGATGAGGATGTGCAGGAG--TTTTCAGCTCATGGCG-TTTGTTTTGCTGATCATGTTG i micMur3.chr16 C 0 I 240 s proCoq1.NW_012135969v1 2939886 140 + 8555354 AGCTGGGGGTGGCATTGCAGACCCCATCTTTGGGGACAAACTTGCTACCCAGTAGTTCTGGTGAGCTTACATCTGCCCGGACACAGGTGAGGGTGTGCAGGAG--TTTTCACCTCACCGTG-TTTGTTTTGCTGACCCCGTTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22737598 132 + 28711273 AGCCAGCGGGGGCATTGCAGACCTCATCTTTGGGGATAAAGTTGCTACTCAATAGTTCTGGTGAGTTTACAGCTGGCTGGACGCAGA-GGTGGTGTGCAGGAG--TTTCCAGCTGATGACA-ATTGTTTTG-------TGCTG i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21356285 105 + 61074082 -----------------------------AAGGCGACAAATTTGCTATCCAGTAAGCTTGATGAG-------CTGCCTGGATGTAGAGGAGGGCATGTGGGAGC-TTCTCAGCTCATGCCA-TCCATTCTGCTGACTACGTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335408 137 - 852752 -AGCTAGGGTGGCATTGCAGACCTCATCTTTGGAGACAAACTTGCTGCCTGAAAGGCCAGGTAAGCTTACACCTGCCCAGAAGTATCAAA----GTGCAGGATCTTTTCCACTCAACGCTG-TCCGTTTTGCTGACTACACTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I a score=630696.000000 s hg38.chr17_GL383564v2_alt 25765 44 + 133151 TGCTCCCAGTTGCTGGCTACTCCCATAGAGGGCTAAAATACTGA s panTro5.chr17 16219645 44 + 83181570 TGCTCCCAGTTGCTGGCTACTCCCATAGAGGGCTAAAATACTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16126998 44 + 83442489 TGCTCCCAGTTGCTGGCTACTCCCATAGAGGGCTAAAATACTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962109 44 + 4267968 TGCTCCCAGTTGCTGGCTACTCCCATAGAGGGCTAAAATACTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941512 44 - 2193130 TGCTCCCAGTTGCTGGCTACTCCCATAGAGGGCTAAAATACTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015123 44 - 77216781 TGCTCCCAGTTGCCGGCTACTCCCAAAGAGGGCTAAAATACTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927720 44 - 80997621 TGCTCCCAGTTGCCGGCTACTCCCAAAGAGGGCTAAAATACTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1983995 44 + 10377808 TGCTCCCAGTTGCCGGCTACTCCCAAAGAGGGCTAAAATACTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871431 44 - 8458610 TGCTCCCAGTTGCCGGCTACTCCCAAAGGGGGCTAAAATACTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827180 44 + 75148670 TGCTCCCGGTTGCCGGCTACTCCCATAGGGGGCTAAAATACTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050333 44 + 4244037 TGCTCCCAGTTGCCGGCTACTCCCAAAGGGGGCTAAAATACTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078478 44 + 4569836 TGCTCCCAGTTGCTGGCTACTTCCATAGGGGGCTAAAATACTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047712 44 - 159171411 TGCTCCCCATTGCTGGCCACTCCCACAGAGGGCTAAAATACTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770144 44 + 3513951 TGCTCCCAGTTGCTGGCTGCTCCCACAAAGGGCTAAAATACTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819036 44 + 1920343 CGCTCGCAGTTGCTGGCCACTCCCACAGAGGGCTAAAATACTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930898 44 - 7032639 TGCTCCCAGTTGCTGGCCACTCCCACAGAGGGCTAAAATACTGA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2940026 44 + 8555354 CACCCCCAACTGCTGGTCACTCCCTCAGGGAGCTAAAATACTGA i proCoq1.NW_012135969v1 C 0 I 216 s otoGar3.GL873537 22737732 44 + 28711273 TACTCCCAATTGCTGGTCACTTCCTTGGAGAGCTAAAATACTGA i otoGar3.GL873537 I 2 C 0 s canFam3.chr9 21356390 44 + 61074082 CATTCCCAGATGCCAATCACTGTCATGGGGAGCTGAAATACTGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335545 44 - 852752 CATTCCCTGCTGCTAGTCACTCCCACAGGGGGCGAACATACTGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e micMur3.chr16 35855884 240 - 65901067 I a score=2678057.000000 s hg38.chr17_GL383564v2_alt 25809 253 + 133151 ATGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCCAGGAGAAGTATTCCAATAACGAGTATTCTTTGTGCTCatagca-tttaaagtattgctaagggcatgtgcactgactctttcattttagttccacaatag--ccctgtgaaaagcatcagagggctgata-tacccctttaagcactaaggaacactatgaggGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGACCATTCTTGTTCCTCTG--------GCCT s panTro5.chr17 16219689 249 + 83181570 ATGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCCAGAAGAAATATTCCagtaatgagtattctttgtgctcatagca-tttaaagtattgctaagggcatgtgcactgactc----attttagttccacaatag--ccctgtgaaaagggtcagagggctgata-tACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCCATTCTTGTTCCTCTG--------GCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127042 249 + 83442489 ATGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCCAGAAGAAATATTCCagtaatgagtattctttgtgctcatagca-tttaaagtattgctaagggcatgtgcactgactc----attttagttccacaatag--ccctgtgaaaagggtcagagggctgata-tACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCCATTCTTGTTCCTCTG--------GCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962153 253 + 4267968 ATGCCCAGCACATTCAGGTTTTGCTAAATTATCTCCAGGAGAAGTATTCCagtaacgagtattctttgtgcgcatagca-tttaaagtattgctaagggcatgtgcactgactctttcattttagttccacaatag--ccctgtgaaaagggtcagagggctgata-tACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCCATTCTTGTTCCTCTG--------GCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941556 253 - 2193130 ATGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCCAGGAGAAGTATTCCAATAACGAGTATTCTTTGTGCTCatagca-tttaaagtattgctaagggcatgtgcactgactctttcattttagttccatagtag--ccctgtgaaaagggtcagaggactgata-tacccctttaagcactaaggaacactatgaggGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCCATTCTTGTTCCTCTG--------GCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015167 243 - 77216781 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGGAGAAGTATTACAGTAATGAGTATTCTTTGTGCTGATAGCA-TTTAAAGTATTGCTAAGGGCATGT-CACTTACTCTTTCATTTTAGTT-----------CCCTGTGAAAAGGGTCAGAGGGCTGATA-TACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCAGTTCTTGTTCCTCTG--------GCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27927764 243 - 80997621 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGGAGAAGTATTACAGTAATGAGTATTCTTTGTGCTGATAGCA-TTTAAAGTATTGCTAAGGGCATGT-CACTTACTCTTTCATTTTAGTT-----------CCCTGTGAAAAGGGTCAGAGGGCCGATA-TACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCAGTTCTTGTTCCTCTG--------GCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984039 243 + 10377808 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGGAGAAGTATTACAGTAATGAGTATTCTTTGTGCTGATAGCA-TTTAAAGTATTGCTAAGGGCATGT-CACTTACTCTTTCATTTTAGTT-----------CCCTGTGAAAAGGGTCAGAGGGCCGATA-TGCCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCAGTTCTTGTTCCTCTG--------GCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871475 252 - 8458610 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGGAGAAGTATTCCAGTAACGAGTATTCTTTGTGCTGATAGCA-TTTAAAGTATTGCTAAGGGCATGTGCACTTACTCTTTCATTTTAGTT-----------CCCTGTGAAAAGGGTCAGAGGGCTGATA-TACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCAGTTCTTGTTCCTCTGgcctttctgcct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827224 244 + 75148670 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGGAGAAGTATTCCAGTAACGAGTATTCTTTGTGCTGATAGCA-TTTAAAGTATTGCTAAGGGCATGTGCACTTACTCTTTCATTTTAGTT-----------CCCTGTGAAAAGGGTCAGAGGGCTGATA-TACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGGGTTTAAATGGAATCAGTGGCTGACATCTGGGCAGTTCTTGTTCCTCTG--------GCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050377 244 + 4244037 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGGAGAAGTATTCCAGTAACGAGTATTCTTTGTGCTGATAGCA-TTTAAAGTATTTCTAAGGGCATGTGCACTTACTCTTTCATTTTAGTT-----------CCCTGTGAAAAGGGTCAGAGGGCTGATA-TACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGATGACATCTGGGCAGTTCTTGTTCCTCTG--------GCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078522 249 + 4569836 GTGCCCAGCACATTCAGGTTTTGCTAAATTCTCTCTAGAAGAAGTATTCCaataatgagtattctttgtgctcatagcg-tttaaagtattgctaagggcatgtgcacttactctttcattttagttccacaatgg--ccctgtgaaaagggtcagagggctgata-tACCCCTTTAAGCACTAAGGAACACTATGAGGGGCTGTGTTTAAATGGAATCAGTGGCTGACATCTGGGCAGTTCTTGTTCCTCTG------------ i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46047756 252 - 159171411 GTGCCCAGCGCATTTAGGTTTCACTAAATTCCCTCCAGAAGAAGTATTCCAATAACGAGta-tctttgtgctcacagcattttaaagtattactaagggcatgtgcgcacactctttcattttagttctacaatag--ccctgtgaAAAGAGTTAGAGGGCTGATC-TACCCCTCTAAGCACTAAGGAACACTATTGGGGGCTGTGTTTAAGTGGAGTT-GTGGCTGACATGTGGGTGGTTCTTGCTCCTCTG--------GCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770188 252 + 3513951 GTGCCCAGTGCACTTAGGTGTTGCTAAATTCCCTCCAGAAGAAGTATTCCAATACGGAGta-tctttgtgctcataacattttaaagtattgctaagggcatgtgcgcatactctttcattttagttccacaatag--ccctgtgaAAAGAGTAAGA-GGCTGATC-TACCCCTCTAAGCACTAAGGAACACTACTAGGGGCTGTGTTTAAGTGGAGTCGGTGGCTGACATCTGGGTGGTTCTTGTTCCTCTG--------GTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819080 253 + 1920343 GTGCCCAGCGCATTTAGGTTTTGCTAAATTCCCCCCAGAAGAAGTATTCCAATAACGAGta-tctttgtgctcacagcattttaaagtattgctaagggcatgtgcgcatactctttcattttagtgccacaatag--ctctgtgaaaagagtaagagggctgatC-TACCCCTCTAAGCACCAAGGAACACTACTAGGGGCTGTGTTTAAGTGGAGTCGGTGGCTGACATCTGGGTGGTTCTTGTTCCTCTG--------GCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6930942 253 - 7032639 GTGCCCAGCGCTTTTAGGTTTTGCTAAATTCCCTCCAGAAGAAGTATTCCAATAACGAGTA-TCTTCGTGTTCacagcattttaaagtattgctaagggcatgtgcgcatactctttcattttagttccacaatag--ccctgcgaaaagagtaagagggctgatC-TACCCCTCTAAGCACTAAGGAACACTATTAGGGGCTGTGTTTAAGTGGAGTTGGTGGCTGACATCTGGGTGGTTCTTGTTCCTCTG--------GCCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22737776 194 + 28711273 GCTTTTAGTGCATATAGGTTTCACTAAGGTCTCTCTGGAAGAAGTGTTTCAGTAA----------------------CA------------GCCAGGGGTGTGTATGCCTACTCTTTCATCTTACGTCCACAACTGCACCCCGGGAAAGGGG----------AACA-CAGCCCTTTAAGCAATAAAGAACACGATCAGGGAT------------------GTGGCTGAGGCCTGGCTAATTCTTGCCCGGCTG--------GCTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21356434 240 + 61074082 GAGCTCAGCGCATTTAGGTTTCACTAAGTTCTCTCTGGAAGAAGTATTCTCATAATAGGGATTCTTCATACTCAGTGT--TAAAAAAAATTGCTAAGGGCATTTGCAGCCATTCTTTCATTTTG--------------TCCTGTGTAACAGGTAAGGTGGATAGAA-CACCTCATGAAGCAATAAGGAACAAGACTGGGGCCTGTGCGTCAATTGGGAGGGCAGTGGACATCTGGCCTGCTGTTGCCCAGCCA--------GCCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 335589 242 - 852752 -----GAGCTCATTTAAGTTTTGCTAAATTCTCCCTGGAAGAAGTATGACAGCAGCAAGAGATCTTAAAACTTATAGCATTTTAAAATAGTGTTA-GACAATTTGCAATTACTT----GTTTTAATGTCTCAATAA--TTGTGTGGAAGAGGTAAGA---CTGATAGGACACTCTTAAAACCTAAGGAACAGTGTCAGGGGCCTTGTTGAAATTAATAGGGCTGCTGACATCTAGCCTCCTCCCGCCCCACCA--------GCCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2940070 216 + 8555354 I e micMur3.chr16 35855884 240 - 65901067 I a score=2042259.000000 s hg38.chr17_GL383564v2_alt 26062 164 + 133151 -TTCTGCCTTTCTCTCTGCTGTGTTCCTT---CCATATGGGACGTGACCCTGGCCTGGCACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTGTGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAGGTCCTCTTTTGCACTT s panTro5.chr17 16219938 164 + 83181570 -TTCTGCCTTTCTCTCTGCTGTGTTCCTT---CCATATGGGACGTGACCCTGGCCTGGCACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAGGTCCTTTTTTGCACTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127291 164 + 83442489 -TTCTGCCTTTCTCTCTGCTGTGTTCCTT---CCATATGGGACGTGACCCTGGCCTGGCACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAGGTCCTCTTTTGCACTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962406 164 + 4267968 -TTCTGCCTTTCTCTCTGCTGTGTTCCTT---CCATATGGGACGTGACCCTGGCCTGGCACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACATCTAAGGTCTAAGGTCCTCTTTTGCACTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1941809 164 - 2193130 -TTCTGCCTTTCTCTCTGCTGTGTTCCTT---CCATATGGGACGTGACCCTGGCCTGGCACAC-AGATACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCACtt i nomLeu3.chrUn_GL397460_1 C 0 I 300 s rheMac8.chr16 30015410 160 - 77216781 -TTCTGCCTT----TCTGCTGTGTTCCTT---CCACGTGGGACGTGACCCTGGCTTGGTACAC-AGGTACACTCAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCTCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928007 160 - 80997621 -TTCTGCCTT----TCTGCTGTGTTCCTT---CCACGTGGGACGTGACCCTGGCCTGGTACAC-AGGTACACTCAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCTCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984282 160 + 10377808 -TTCTGCCTT----TCTGCTGTGTTCCTT---CCACGTGGGACGTGACCCTGGCCTGGTACAC-AGGTACACTCAATTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCTCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871727 160 - 8458610 -ttctgcctt----tctgcTGTGTTCCTT---CCACGTGGGACGTGACCCTGGCCTGGTACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCTCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827468 160 + 75148670 -TTCTACCTT----TCTGCTGTGTTCCTT---CCACGTGGGACGTGGCCCTGGCCTGGTACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACCGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCTCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050621 160 + 4244037 -TTCTGCCTT----TCTGCTGTGTTCCTT---CCACGTGGGACGTGACCCTGGCCTGGTACAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGGACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCTCTTTCGCTCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078771 156 + 4569836 -----GCCTT----TCTGCTGTGTTCCTT---CCACACGGGATGTGACCCTGGCCTGGGTCAC-AGGTACACTGAGTTCTGGCCCCAGCTCC-ACTGTGCACTATGGGCACGTCATTGCCCCTTTC-AGGCTTAGAGGGACCTCTAAGGTCTAAAGTCCCCTTTTGCTCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048008 156 - 159171411 -TTCTG--------TCTGCTGTGTTCTTT---CCACATGGGATGTGACCCTGGCCTTGCACAC-AGGTATGCCGAGTGCTGGTCTGAGCTCC-ACTGTGGACTCTGGGCACATAATTGCCCCTTTC-AGGCTTAGAGAGACCTCTAAGATCTAAAGTCCTTTTTCACTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770440 155 + 3513951 -TTTTC--------TCTGCTGTGTTCCTT---CCACATGGAATGTGACCCTGGCTTTGCACAC-AGGTATGCTGAGTGCTGGTCTGAGCTCC-ACTGTGGACTCTGGGCACATTCTTGCCCCTTTC-AGGCTTAGAGAGACCTCTAAGGTCTAAAGTCCTTTTTCACTC-T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819333 156 + 1920343 -TTCTC--------TCTGCTGTGTTCCTT---CCACATGGGATGTGACCCTGGCCTTGCACAC-AGGTATGCTGAGTGCTGGTCTGAGCTCC-ACTGTGGACTCTGGGAATATCATTGCCCCTTTC-AAGCTTAGAGAGACCTCTAAGGTCTAAAGTCTTTTTTCACTCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6931195 152 - 7032639 -T------------TCTGCTGCGTTCCTT---CCACATGGGATGTGACCCTGGCCTTGCACAC-AGGTATGCTGAGTGCTGGTCTGAGCTCC-ACTGTGGACTCTGGGCACATCATTGCCCCTTTC-AGGCTTAGAGAGACCTCTAAGGTCTAAAGTCCTTTTTCACTCTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35856124 151 - 65901067 -TTCTGCCTTTCTCTCTGCCATGTTCCTT---CCATAGGAGAGTGGGCCCTGGCCTTGCACGC-AGGTACCCTGAGTTCTGG-CCCAGCTCC-------------GGGCAAGTCACTGCTTCTTTT-AGGCTTAGAGAGATATCTAAGGTCTAAAATTCTCTTTTGCTCTC i micMur3.chr16 I 240 C 0 s proCoq1.NW_012135969v1 2940286 151 + 8555354 -TTCTGCCTTTCTCTCTGCCATGTTCCTT---CCATAGGGGAGGTGGCCCTGGCCTTGCACAC-AGGTACCCTGAGCTCTGG-CCCAGCTCC-------------GGGCAAGTCACTGCTTCTTTT-AGGCTTAGAGGGATATCTAAGGTCGAAAATTCTCTTTTGCTCTC i proCoq1.NW_012135969v1 I 216 C 0 s otoGar3.GL873537 22737970 142 + 28711273 -TTCTGCCTTTCTCTCTGCTGGGTTCCTT---CCCCAGGGGAGGTGATCC-----------------------AAGCTCTGGCCCCAGCTCCACTCGTGGAACCTGGGCAGGTGACTGCTTTTCTC-A-GCTTGGAGGAATATCTAAGGTCTAGAATTCTCATTCAGGCTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21356674 164 + 61074082 -TTCTGCATTTC--TTGCCCTTGTTCCTTTGCCCACGGCAGGAAGGGCTGTTTTTTCGCACAG-AGGTCCCCCGAGCTCTGATCCTACCTCT-GCTGTA-ATTCTGGCCATGTAGCTACCCCTTTCTAGGCCTAGCAGGACCTCCAAGGTTTACA-TTCTCCTTTGCTTTC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 335831 148 - 852752 GTCCACCTTTTCTCTCTGCCATGTCCCTT---TCCCGTGGATGGTGACACTGGTTTTGCACACAAAGCAGCCTAAGTTTTGCTCCCAGCTCC-ACTGTGGACT-TAGGGAAATCACTGCCTCTATC------------------TAAGGTCTGCAATTCTCCTTAGACTCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I a score=741839.000000 s hg38.chr17_GL383564v2_alt 26226 54 + 133151 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA s panTro5.chr17 16220102 54 + 83181570 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127455 54 + 83442489 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962570 54 + 4267968 TAATTCTAAAGTGTCTATAATATACTTTTGTCCTTCACATACTTCTCATGCCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1942273 54 - 2193130 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i nomLeu3.chrUn_GL397460_1 I 300 C 0 s rheMac8.chr16 30015570 53 - 77216781 TAATTCTAACGTGTCTATAATATA-TTTTGTCTTTCACATACTTCTCATGCCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928167 54 - 80997621 TAATTCTAACGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984442 54 + 10377808 TAATTCTAACGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871887 54 - 8458610 TAATTCTAACGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827628 54 + 75148670 TAATTCTAACGTGTCTATAATATACTTTTGTCTTTCACATACTTTTCATGCCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050781 54 + 4244037 TAATTCTAACGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078927 54 + 4569836 TAATTCTAACGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048164 54 - 159171411 TAATTCTAAAGCGTCTTTAATACACTTTTGTCTCTCACATACTTCTCATGCCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770595 54 + 3513951 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819489 54 + 1920343 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATGCTTCTCATGCCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6931347 54 - 7032639 TAATTCTAAAGTGTCTATAATATACTTTTGTCTTTCACATACTTCTCATGCCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35856275 47 - 65901067 AGATTCTAAAGTGTCC---ATATATT----TCTTTCACGCACATCTCGTGCCAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2940437 47 + 8555354 AAATTCTAAAGTGTCT---ATATACT----TCTTTCACACGCTTCTCACACCAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22738112 47 + 28711273 AAATCCTAAGTTGTCT---ATGTGCT----TCTTTCACTCACTTCTCACGCCAC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21356839 51 + 61074082 CAATTGGAAAGTGTCT---GTGTACTTTAGTCTTTCATACACtttttttttaaa i canFam3.chr9 I 1 I 780 s dasNov3.JH570468 335979 51 - 852752 GAAATCCTAAGTGTCT---CTACACTCTTTCCTTCTATGCACTTCTCACACCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I a score=751677.000000 s hg38.chr17_GL383564v2_alt 26280 47 + 133151 TGTTTCAAACA---CC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCGTG s panTro5.chr17 16220156 47 + 83181570 TGTTTCAAACA---CC-CTTTTTCTCTATGCAGATTTCCCTGCAACCCGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127509 47 + 83442489 TGTTTCAAACA---CC-CTTTTTCTCTATGCAGATTTCCCTGCAACCCGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962624 47 + 4267968 TGTTTCAAACA---CC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1942327 47 - 2193130 TGTTTCAAACA---CC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015623 47 - 77216781 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928221 47 - 80997621 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984496 47 + 10377808 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871941 47 - 8458610 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827682 47 + 75148670 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050835 47 + 4244037 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2078981 47 + 4569836 TGTTTCAAACA---TC-TTTTTTCTCTATGCAGATTTCCCTGCAACCCATG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048218 47 - 159171411 TGTTTCAAACA---CC-TTTTTTCTCTACGCAGATTTCCTTGCAACCTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770649 48 + 3513951 TGTTTCAAACA---CCTTTTTTTCTCTACGCAGATTTCCCTGCAACCTGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819543 47 + 1920343 TGTTTCAAATA---CC-TTTTTTCTTTATGCAGATTTCCCTGCAACCTGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6931401 47 - 7032639 TGTTTCAAACA---CC-TTTTTTCTCTACGCAGATTTCCCTGCAACCTGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35856322 47 - 65901067 CATTTCAAACA---CT-GTTTTTCTCTCCGCAGACTTCCCTGCAACCCGTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2940484 47 + 8555354 TGTTTCAAACA---CT-GTTTTTTTCTCCGCAGACTCCCCTGCAACCCGTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22738159 47 + 28711273 TGTTTCAATCT---CT-GTTTTTCTGTCCGCAGGCTTCCCTGCAACCCCTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21357670 46 + 61074082 TGTTCCAACCA---CC--TTTTTCTCTCCGCAGGCTCCCTTGCAACCCATG i canFam3.chr9 I 780 C 0 s dasNov3.JH570468 336030 50 - 852752 CGTTTCAAACATGTTC-CTTTCCCTCTCTGCAGGCTTCCCTGCAACCCGTG i dasNov3.JH570468 C 0 I 108 e mm10.chr11 22025191 2 - 122082543 I a score=336089.000000 s hg38.chr17_GL383564v2_alt 26327 26 + 133151 TGCAACCCCA---------------------------------------------------------GCCTTCAGCACTCCTA s panTro5.chr17 16220203 26 + 83181570 TGCAACCCCA---------------------------------------------------------GCCTTCAGCACTCCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127556 26 + 83442489 TGCAACCCCA---------------------------------------------------------GCCTTCAGCACTCCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962671 26 + 4267968 TGCAACCCCA---------------------------------------------------------GCCTTCAGCACTCCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1942374 26 - 2193130 CGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015670 26 - 77216781 TGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928268 26 - 80997621 TGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984543 26 + 10377808 TGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1871988 26 - 8458610 TGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827729 26 + 75148670 CGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050882 26 + 4244037 TGCGACCCCA---------------------------------------------------------GCCTTCAGCACTGCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079028 26 + 4569836 CGCGACCCCA---------------------------------------------------------GCCTTCAGCACTCCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048265 26 - 159171411 CGTGATCCCA---------------------------------------------------------GCCTTCAGCAACCCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770697 26 + 3513951 AGTGATCCCA---------------------------------------------------------GCCTTCAGCAACCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819590 26 + 1920343 CGTGATCCCA---------------------------------------------------------GCCTTCAGCAACCCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6931448 26 - 7032639 CATGATCCCA---------------------------------------------------------GCCTTCAGCAACCCCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35856369 26 - 65901067 TGCGACCCCA---------------------------------------------------------GCCTTCAGCGCCCCCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2940531 26 + 8555354 TGCGACCCCA---------------------------------------------------------GCCTTCAGCATCCCCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22738206 26 + 28711273 TGCGACCCCA---------------------------------------------------------GCCTTCAACACTCCCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21357716 26 + 61074082 TGCAACCCCA---------------------------------------------------------GCAGCCAGCACCCTCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 336188 83 - 852752 tgcagttctaatagcaaacagctgcttggtagtttccaataaatacgaggtggaaacaagggtcgaggctctcagttcccgta i dasNov3.JH570468 I 108 I 128 e mm10.chr11 22025191 2 - 122082543 I a score=827552.000000 s hg38.chr17_GL383564v2_alt 26353 55 + 133151 GTCCAGCCCCTGCAGCCTGCGCCCCCTGCTC---------------------CCGGGCCACCCATGGGCCCTGCTC s panTro5.chr17 16220229 55 + 83181570 GTCCAGTCCCTGCAGCCTGCGCCCCCTGCTC---------------------CCGGGCCACCCATGGGCCCTGCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127582 55 + 83442489 GTCCAGTCCCTGCAGCCTGCGCCCCCTGCTC---------------------CCGGGCCACCCATGGGCCCTGCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962697 55 + 4267968 GTCCAGCCCCTGCAGCCTGCGCCCCCTGCTC---------------------CCGGGCCACCCATGGGCCCTGCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1942400 55 - 2193130 GTCCAGCCCCTGCAGCCTGTGCCCCCTGCTC---------------------CTGGGCCACCCATGGGCCCTGCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015696 55 - 77216781 GTCCAGCCCCAGCAGCCTGTGCCCCCTGCTC---------------------CTGGGCCACCCATGGGCTCTGCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928294 55 - 80997621 GTCCAGCCCCAGCAGCCTGTGCCCCCTGCTC---------------------CTGGGCCACCCATGGGCTCTGCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984569 55 + 10377808 GTCCAGCCCCAGCAGCCTGTGCCCCCTGCTC---------------------CTGGGCCACCCATGGGCTCTGCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872014 55 - 8458610 GTCCAGCTCCAGCAGCCTGTGCCCCCTGCTC---------------------CCGGGCAACCCATGGGCTCTGCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827755 55 + 75148670 GTCCAGCCCCAGCAGCCTGTGCCCCCTGCTC---------------------CCGGGCCACCCATGGGCTCTGCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050908 55 + 4244037 GTCCAGCCCCAGCAGCCTGTGCCCCCTGCTC---------------------CCGGGCAACCCATGGGCTCTGCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079054 55 + 4569836 GTCCAGCCCCTGCAGCCTGTGCCCCCTGCTC---------------------CCGGGCCACCCATGGGCTCTGCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048291 55 - 159171411 GTACAGCCCCTGCAGCCTGTGCTCTCTGCTC---------------------CTGGGCCACCCATGGGCCCTGCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770723 55 + 3513951 GTCCCACCCCTGCAGCCTGTGCCCTCTGCTC---------------------CTGGGCCACCCATGGGCCCTGCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819616 55 + 1920343 GTCCAGCCCCTGCAGCCTGTGCCCTCTGCCC---------------------CTGGGCCACCTATGGGCCCTGCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6931474 55 - 7032639 GTCCAGCCCCTGCAGCCTGTGCCCTCTGCTC---------------------CTGGGCCACCCATGGGCCCTGCTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35856395 55 - 65901067 GTCCAGCCCCTGCAGCCTGTACCCCCTGCTC---------------------TCGGGCCTCCTGTGGGCCCTGCTC i micMur3.chr16 C 0 I 2477 s proCoq1.NW_012135969v1 2940557 55 + 8555354 GTCCAGCCCCTGTAGCCCGTAGCCCCTGCTC---------------------TCGGGCCTCCTGTGGGCCTTGCTC i proCoq1.NW_012135969v1 C 0 I 148 s otoGar3.GL873537 22738232 31 + 28711273 GTCCAGCCCCTGCAGCCCGTTCCCTCCGCTC--------------------------------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21357742 76 + 61074082 GTCCAGCCCCTGCAGCCTGTACCCCCTGCTCTCCCTGCTGTTCTGGGCCCCCTCGGGCCTCCTGTGGTACCTGTTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 336399 76 - 852752 GCCCAGCTCCTGCAACTTGTACCCCCTGTTCTCCTTGCCTTCCTGGTCCTCCTTAGGCCTCCTGTGGGGCCTGCCC i dasNov3.JH570468 I 128 C 0 e mm10.chr11 22025191 2 - 122082543 I a score=2260451.000000 s hg38.chr17_GL383564v2_alt 26408 204 + 133151 ATCAACTGGATACTGACACACTCCTCAGCCCGAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTCGTTAGGCTTTGCTCTGCAGGCCTGCTAACCTGGGCCTTGCCTCCCT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAATCCAGCAGCTCAGCCCCTATGGCTGGATT--TGTTTCT s panTro5.chr17 16220284 203 + 83181570 GTCAACTGGATACTGACACACTCCTCAGCCCGAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTTGTTAGGCTTTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCCT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTATGGCTGGATT--TGTTTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127637 203 + 83442489 ATCAACTGGATACTGACACACTCCTCAGCCCGAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTTGTTAGGCTTTGCTCTGCAGGCCTGCTA-CCTGAGCCTTGCCTCCCT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTATGGCTGGATT--TGTTTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962752 203 + 4267968 ATCAACTGGATACTGACACACTCCTCAGCCCGAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTCGTTAGGCTTTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCCT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTATGGCTGGATT--TGTTTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1942455 203 - 2193130 ATCAACTGGATACTGACACACTCCTCAGCCCGAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCCT---G-ACTAGCCAGGCAGGAGACTGA--AGACAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAACCCCTATGGCTGGATT--TGTTTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015751 205 - 77216781 ATCAGCTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAAGGGCAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCTT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTGTGACTGAATTTGTGTTTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928349 205 - 80997621 ATCAGCTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAAGGGCAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCTT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTGTGACTGAATTTGTGTTTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984624 205 + 10377808 ATCAACTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAAGGGGAGGAGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCTT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTGTGACTGAATTTGTGTTTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872069 208 - 8458610 ATCAACTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAACGGGAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCTTAGGG-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTGTGACTGAATTTGTGTTTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64827810 205 + 75148670 ATCAACTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCTT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAATGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTGTGACTGAATTTGTGTTTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2050963 205 + 4244037 ATCAACTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCTT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTATGACTGAATTTGTGTTTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079109 205 + 4569836 ATCAATTGGATACTGACACACTCCTCAGCCCAAGGTGCTGGGAAAGGGGAGGTGTCTTCAGCTCGTTAGGCTCTGCTCTGCAGGCCTGCTA-CCTGGGCCTTGCCTCCCT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGACAGTGCCACTCTGTGGATAGGTGTTTGAGTCCAGCAGCTCAGCCCCTGTGGCTGGATTTGTGTTTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048346 205 - 159171411 ATCAACTGGATACTGACACACTCCTCAGCCTGAGGTGCTGGGAAAGGGGAGGCGTCTTCAGCCCCTTAGGCTCCACTCTGCAGGCCTGCTA-ACTGGGCTTTGCCTCCCT---G-GCCAGCCAGGCAGGAGACTGA--AGAGAGGCAGTGCCACTCTGTGGATAGGTTTTTGAGTTTAGCAGCTCAGTCCCTGTGGCTGGATTTGTGTTTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1770778 202 + 3513951 ATCAACTGGATACTGACAC---TCTCAGCCCGAGGTGCTGGGAAAGGGGAGGCGTCTTCAGCCCCTGAGGCTCCACTGTGCAGGCCTGCTA-CCTGGGTTTTGCCTCCCT---G-GCCAGCCAGGCGGGAGGCTGG--AGAGAGGCAGTACCACTCTGTGGACAGGTTTCTGAGTCTAGCAGCTCAGCCTCTGTGGCTGGATTTGTGTTTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1819671 184 + 1920343 ATCAACTGGATACTGACAC---ACTCAGCCCGCGGTGCTGGGAAAGGGGAGGCGTCTTCAGTCCCTTAGGCTCCACTCTGCAGGCCTGCTA-CCTGGGCTTTGCCTCCCT---G-GCCAGCT--------------------AGGCAGTGCCGCTCTGCGGATAGGTTTTTGAGTCTAGCAGCTCAGCCTCTGTGGCTGGATTTGTGTTTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6931529 202 - 7032639 ATCAACTGGATACTGACAC--TCCTCGGCCCTAGGTGCTGGGAAAGAGGAGGCGTCTTCAGCCCCTTA-GCTCCACTCTGCAGGCCTGCTA-CCTGGGCTTTGCCTCCCT---G-GCCAGCCAGGCGGGAGACTGA--AGAGAGGCAGTGCCACTCTGTGGATAGGTTTTTGAGTCTAGCAGCTCAGCCCCTGTGGCTGGATTTGTGTTTCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22738263 185 + 28711273 ATTGACTGGAGGCTGACAAGC-----------AGGTCTTGGGAGATGGGAAGCATCTTCAGCTCCCTGGGCCC-------CAGCTCTGCTG-CC----CTGTGTGACCCT---GCTCCAGCCAGGGAAGAGATGGGGTAGGGGAGAAGGGGCTCTCTGTGGGTAGATATCCCAGTCCTGCC-CTCAGGCCCTGCTCTGGAGTTTGTGCTTCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21357818 192 + 61074082 ATCATCTCGATGCTGACACACTCCTCAGCCTGAGGAATCAGGAAATGGGAACCATCTGCAGCCCGGCTGGCTCCACTCTGCAGGCCTGCCACCCCAGGCCTTGCTCCCCC---A-GCCAGCT----------------GGACAGGTAGTGCTTCTCTGCTGTTGGGCTTTCCAGTCTGGCAGCTCAGCCCTGGCCCCTGGATTTGGGCTTCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 336475 161 - 852752 ATCCACTCAATGCTGAC---------------------TGGAAAA--------GTCTGTAGTTCCTTTGTCTC-ACTCTCCTCACCTGTTG-----------GACTCACC-----TCCAGCCAGGC---AGACTGAG-AGAGGATGTGTGCTTTTCTACTAATTGCT-TTCAAATCCAGAAGCTCAGCCCCTGCCCCGGGATTTGTGCTTCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2940612 148 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=5801451.000000 s hg38.chr17_GL383564v2_alt 26612 438 + 133151 TCCCCTCAAGGTGTCCCAAGTGCTCCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACTTTTGTTTTTATTTTGCTATTAAACTTCGCTTCTGCAGCAGAATGAGCCCAGTGCAGTCCAGCCTCAGCATCTCCGTCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGCTCGCC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTAGAGTT-AAAAATGGGACTGCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACCTCACCAAGTGTATTTGGAGACAGATTTACAGATAGAGCTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA s panTro5.chr17 16220487 438 + 83181570 TCCCCTCAAGGTGTCCCAAGTGCTCCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACTTTTGTTTTTTTTTTGCTATTAAACTTCGCTTCTGCAGCAGAATGAGCCCAGTGCAGTCCGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTAGAGTT-AAAAATGGGACTGTGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACCTCACCAAGTGTATTTGGAGACAGATTTACAGATAGAGCTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTCATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16127840 438 + 83442489 TCCCCTCAAGGTGTCCCAAGTGCTCCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACTTTTGTTTTTATTTTGCTATTAAACTTCGCTTCTGCAGCAGAATGAGCCCAGTGCAGTCCGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTAGAGTT-AAAAATGGGACTGCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACCTCACCAAGTGTATTTGGAGACAGATTTACAGATAGAGCTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTCATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3962955 437 + 4267968 T-CCCTCAAGGTGTCCCAAGTGCTCCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGAGCAGGCACTTTTGTTTTTATTTTGCTATTAAACTTCGCTTCTGCAGCAGAATGAGCCCAGTGCAGTCCGGCCTCAGCATCTCCGTCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--CGGGAGTTGT---------------GGCTGGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTAGAGTT-AAAAATGGGACTGCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACCTCACCAAGTGTATTTGGAGACAGATTTACAGATAGAGCTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-AGAAGAGCTCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1942658 437 - 2193130 TCCCCTCAAGGTGTCTCGAGTGCTCCATTTTCTCTCTTCTGTTGCCTCCTGATTTCTCTGAGATGGGGCAGGCACCCTTGTTTTTATTTTGCTATTAAACTTCGCTTCTGCAGCAGAATGAGCCCAGTGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGACAGCCTTGCTGGGAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--TGGGGGTTGT---------------GGCTGGCTCACC--AGGGTGGTCCT-GGGAGATGGCAAAGCCAGTGAAGGCTAGAGTT-AAAAATGGAACTGCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACCTCACCAAGTGTATTTGGAGACAGATTTACAGATAGAGCTTTTAAAATATAGATGATAAGTAAAA-CTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30015956 437 - 77216781 TCCCCTCAAGGTGTCTCGAGTGCGCCATTTTCTCTCTTCTGTTGCCTCCTGATCTGTCTGAGAGGGGGCAGGCACCCTTGTTTTTATTTTGCTATTAAACTTTTCTTCTGTAGCAGAATGAGCCCAGCGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CTTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGAT-GCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACTTCACCGAGTGTATTTGGAGACAGATTTACAGATAGAACTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928554 437 - 80997621 TCCCCTCAAGGTGTCTCGAGTGCGCCATTTTCTCTCTTCTGTTGCCTCCTGATCTGTCTGAGAGGGGGCAGGCACCCTTGTTTTTATTTTGCTATTAAACTTTTCTTCTGTAGCAGAATGAGCCCAGCGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CTTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGAC-GCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACTTCACCGAGTGTATTTGGAGACAGATTTACAGATAGAACTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1984829 437 + 10377808 TCCCCTCAAGTTGTCTCGAGTGCGCCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACCCTTGTTTTTATTTTGCTATTAAACTTTTCTTCTGTAGCAGAATGAGCCCAGCGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CTTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGAC-GCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACTTCACCGAGTGTATTTGGAGACAGATTTACAGATAGAACTTTTAAAATATAGATGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872277 437 - 8458610 TCCCCTCAAGATGTCTCGAGTGCACCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGAACCCTTGTTTTTATTTTGCTGTTAAACTTTTCTTCTGTAGCAGAATGAGCCCAGCGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CTTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGAC-GCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACTTCACCGAGTGTATTTGGAGACAGATTTACAGATAGAACTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828015 437 + 75148670 TCCCCTCAAGGTGTCTCGAGTGCACCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACCCTTGTTTTTATTTTGCTATTAAACTTTGCTTCTGTAGCAGAATGAGCCCAGCGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTTCTGGGAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--CGGGGGCTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGAC-GCAGCAAAGTGGTACAGAGGAGAGATACCCAACC----TTGGACTTCACCGAGTGTATTTGGAGACAGATTTACAGATAGAACTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051168 437 + 4244037 TCCCCTCAAGGTGTCTCGAGTGCGCCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACCCTTGTTTTTATTTTGCTATTAAACTTTGCTTCTGTAGCAGAATGAGCCCAGCGCAGTCTGGCCTCAGCATCTCCATCCCATGCTGAGAGCCTTGCTGGGAA-CT-------CTTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGAC-GCGGCAAAGTGGCACAGAGGAGAGATACCCAACC----TTGGACTTCACCGAGTGTATTTGGAGACAGGTTTACAGATAGAACTTTTAAAATATAGACGCTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGTAAA-GGAAGAGCTCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079314 438 + 4569836 TCCCCTCAAGGTGTCTCGAGTGCACCATTTTCTCTCTTCTGTTGCCTCCTGATCTCTCTGAGATGGGGCAGGCACCCTCGTTTTTATTTTGCTATTAAACTTTGCTTCTGCAGCAGAATGAGCCCAGCACAGTCTGGCCTCAGCATTTCCATCCCATGCTGAGAGCCCTGCTGGAAA-CT-------CCTTGAGCCACATGCTTCTGTAGA--CGGGGGTTGT---------------GGCTGGTTCACC--AGAGTGGTTCT-GGGAGATTGCAAAGCCAGTGAAGGCTGGAGTT-AAAAATGGGACTGCGGCAAAGTGGCACAGAGGAGAGATACCCAAAC----TTGAACTTCACCGAGTGTATTTGGAGACAGATTTACAGATAGAACTTTTAAAATATAGACACTAAGTAATATTTCCCTTTTATCTGGAT-AAGCCACCTAGTCCTTGTGTAAA-GGAGGAGCTCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048551 438 - 159171411 TACTCTCAAGGTGTCTCGAGTGATCCATTTTCTCTCTTCTGTTGCCTCCTGAGCTCTCTGAGATGGGGCAGGGACTCTTGTTTTTATTTTGGTATTAGACTTCACTTCTGCAGCAGAATGGGCCCAGTACATTCTGGCCTCAGCATCTCCATCCCATGTGGAGAGCCTTGCTGGGAA-CT-------CCTTGGGCCACCTGCTCCTGTAGA--CGGGGGTTTT---------------GGCTGGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGACCAGGGTT-AAAAATGGGACTGCGGCAAAGTGGCACAGAGGAGAGATACACAACC----TTTGACCTGACCAAGCATATTTGGAGACAGATTAATAGACAGAGCTTTTAAAATACAGACACTAAGTAAAATTTCCTTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGCAAA-GGAAGAGCTCAA i calJac3.chr5 C 0 I 7 s saiBol1.JH378271 1770980 428 + 3513951 TTCCCTCAAGGTGTCTCGAGTGATCCATTTTCTCTCTTCTGTTGCCTCCTGCGCTCTCTGAGATGGGGCAGA------TGTTTTTATTATGCTATTAGACTTCACTTCTGCAGCAGAATGGGCCCAGTACATTCGGACCTCAGCATCTCCATCCCACGTGGAGAGCCTTGCTGGGAACCC-------CCTTGGGCCACCTGCTCCTGTAGA--CAGGGGTTGT---------------GGCTGGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGACCAGGG-T-GAAAATGGGACTGCGGCAAAGTGGCACAGAGGAGAGATACATAACC----TTTGACCTGACCAAGCGTATTTAGAGACAGATTA----ACAGAACTTTTAAAATACAGACACTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTCTGCAAA-GGAAGAGCTTAA i saiBol1.JH378271 C 0 I 7 s cebCap1.NW_016107730v1 1819855 438 + 1920343 TCCCCTCAAGGTGTCTCGAGTGATCCATTTTCTCTCTTCTGTTGCCTCCTGAGCTCTCTGAGATGGGGCAGGGACTCTTGTTTTTATTTTGCTATTAGACTTCACTTCTGCAGCAGAATGGGCCCAGTACATTCTGGCCTCAGCATCTCCATCTCATGTGGAGAGCCTTGCTGGGAA-CT-------CCTTAGGCCACCTGCTCCTGTAGA--CGGGGGTTGT---------------GGCTGGCTCACC--AGAATCGTTCT-GGGAGATGGCAAAGCCAGTGAAGACCAGGGTT-AAAAATGGGACTGCGGAAAAGTGGCACAGAGGAGAGATACACAATC----TTTGACATGACCAAACGTATTTGGAGACAGAGTAACAGACAGAGATTTTAACATACAGACACTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGCAAA-GGAAGAGCTCAA i cebCap1.NW_016107730v1 C 0 I 7 s aotNan1.NW_018502359v1 6931731 437 - 7032639 TCCCCTCAAGGTGTCTCGAGTGATCCATTTTCTCTCTTCTGTTGCCTCCTGAGCTCTCTGAGAT-GGGCAGGGACTCTTGTTTTTATTTTGCTATTAGACTTCACTTCTGCAGTAGAATGGGCCCAGTACATTCTGGCCTCAGCATCTCCATCCCATGTGGAGAGCCTTGCTGGGAA-CT-------CCTTGGGCCACCTGCTCCTGTAGA--CGGGGGTTGT---------------GGCTGGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCAGTGAAGACCAGGGTT-AAAAATGGGACTGTGGCAAAGTGTCACAGAGGAGAGATACACAACC----TTTGACCTGACCAAGCGTATTTGGAGACAGATTAACAGATAGAGGTTTTAAAATACAGACACTAAGTAAAATTTCCCTTTTATCTGGAT-AAGCCACCTGGTCCTTGTGCAAA-AGAAGAGCTCAA i aotNan1.NW_018502359v1 C 0 I 7 s proCoq1.NW_012135969v1 2940760 432 + 8555354 TCCCTTCAGGGTGTCTTGAGTGCTCCTTTTTTCCTATTCCGTTGCCTCCTG----CCCTGAGATGCGGCAGGCAATCTTGTTTTTATTTTGCTAATAAACTTTGCTTCTGCAGCACCACGAGCCCAGGGCCTGCGGGTGTCAGTTTCTCCATCCCATGCTGAGAGCCTTGCTGGGTG-CT-------CTGGGAGCCAGCTGCTCCTGTGCAAGCAGGGGCTGT---------------GCCTCACTCCCC--GGAAGGGTTCT-GAGAGATGGCGAAGCCAGTGAAGACCGG-GTT-AAGCATGAGACTGCAGCAACGTGGCACAGAGGAGAGACACCCAGCC----CTTGAGCTAACCAAGCCTATTTGGAGCCAGGTTCAC----AGAGCTTTCAAAATACAGATGCTAAGTCAAACTTCCCTTTTATCTGGATGAAGCCGCCTGGTCCTCATGCAAA-GGAAAAGCTCAA i proCoq1.NW_012135969v1 I 148 I 160 s otoGar3.GL873537 22738448 437 + 28711273 TCCCTTCAGGCTGTCCTGAGTGCTCTGTCTTTCCT-----GTTGCTACCTGTTCTCTCTGAGATGGGGCAGGCAATGCTATTTTTATTTTGCTAATAAATTTCCCCTCTGCAGTATACAGAGCCCAGGGCCCGCAG--GTCTGTTTGTCCATCCCACGCTGAGAGCC-TGCTGGGCG-CTCCTCGTCCTGGAAGCCACCCTTTCCTGTGGAAGCAAGGGCTGT---------------GCTTCACTCCCT--AGAAGGGTTCCAGGGAGATGGCAGAGCCAGTGGAGACTGG-GTT-AAAAATGAGACTGCAGCAACCTGACACAGAGGAGCAACACCCAGCC----CTTGACCTGACCGAGCCTATTTGGAACCAGGTTCAC----AGAGCTTTTAAAATACGGACGCTAAGTAAAATTTCTCCTTTATCTGGATGAAGCTACCTGGTCCTCATGCAAAGGGAAGAGCTCAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21358010 432 + 61074082 TCTCCTTAAGGTGTCTTGGATGCTCCTTTTGCTTCCTTTTGTTGCCTCACAG----TCTGAGCTGTGGTAGATATCTTTGTTTTTATTTTGCTAATAAACTTCACTTTGGCAGCATGAAGAGCCCAAGAC---CTGTGATCAGTGTCTCCACCCCGCATCAAGAGTGTTGCTGAGGG-CC-------CCTTGAGCCAGCTGTCTCCACAGAAGCAGGGGTTGG---------------GGATCTCTCACCTTAGAGGGGTTCT-GGGAGATGGCAAAGCCAGTGAGGACTGCAGTT-AAGAATGGGCCTGCAGCAAAATAGCACAGTTCAGAGATAACCAGCTGTAACTGGGTATC-TAAAGCCTATTTAGAGCCAGATTCAC----AGAACTTTTAAAATACAGGCACCAAATAAAA--TCCCCCTTATCAGGAT-GAAGCCTCTGGTCCTTGTGCAAA-GGAAAAGCTCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 336636 437 - 852752 TCTCTTCAGGGCATCTTGGGACCTCCAT------TCTTGCATTGCCTCCTG----CTCTGAGATGTGGCAGGCAGTCTCATTTTTATTTTGCTAATAAACTTTCCTTCTGCAGCACAGTGAGCCCAGAGCCTGCTGGCTGCAGCCCCT-CAGCCCATGCTGAGCA------TGTATG-CT-------CCTTGGGCTGGCTG-TTCCGTGGAAGCAGGGACTGTGGTCCAGGACGTCAAGGTTCGCTCACC--AGAGTGGTTCT-GGGAGATGGCAAAGCCATTGAGGACCGGGGTCAAAAAATGGGACTCCAG-AATGTGGCACAGATGAGAGACACCTGGCT----TTGACCCACA-GAAGCCTGTCTGGAGCCAGATTCAGAGATGGGCCATTTAAAATGCAGGCATTTAGTAAACTCCCCCCTTTATCTGGATGAAGTCACCTGGTCCCGGTGCAAA-GGAAAAGCTCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e micMur3.chr16 35856450 2477 - 65901067 I a score=53602.000000 s hg38.chr17_GL383564v2_alt 27050 5 + 133151 ATCTG s panTro5.chr17 16220925 5 + 83181570 ATCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128278 5 + 83442489 ATCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963392 5 + 4267968 ATCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943095 5 - 2193130 GTCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016393 5 - 77216781 GTCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928991 5 - 80997621 GTCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985266 5 + 10377808 GTCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872714 5 - 8458610 GTCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828452 5 + 75148670 GTCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051605 5 + 4244037 GTCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079752 5 + 4569836 GTCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46048996 5 - 159171411 GTCTG i calJac3.chr5 I 7 C 0 s saiBol1.JH378271 1771415 5 + 3513951 GTCTG i saiBol1.JH378271 I 7 C 0 s cebCap1.NW_016107730v1 1820300 5 + 1920343 GTCTG i cebCap1.NW_016107730v1 I 7 C 0 s aotNan1.NW_018502359v1 6932175 5 - 7032639 GTCTG i aotNan1.NW_018502359v1 I 7 C 0 s otoGar3.GL873537 22738885 5 + 28711273 GTCAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21358442 5 + 61074082 GTCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337073 2 - 852752 GT--- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=8071.000000 s hg38.chr17_GL383564v2_alt 27055 1 + 133151 C s panTro5.chr17 16220930 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128283 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963397 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943100 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016398 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928996 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985271 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872719 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828457 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051610 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079757 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049001 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771420 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820305 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932180 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22738890 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e dasNov3.JH570468 337075 0 - 852752 C e canFam3.chr9 21358447 0 + 61074082 C a score=224641.000000 s hg38.chr17_GL383564v2_alt 27056 25 + 133151 GGCACCACAGACCGTTGCAAAACTC s panTro5.chr17 16220931 25 + 83181570 GGCATCACAGACTGTTGCAAAACTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128284 25 + 83442489 GGCATCACAGACCATTGCAAAACTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963398 25 + 4267968 GGCACCACAGACCGTTGCAAAACTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943101 23 - 2193130 GGCACTACAGACGGTTGCAAAA--C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016399 25 - 77216781 GGCACCACAGACCGCTGCAAAACTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27928997 25 - 80997621 GGCACCACAGACCGCTGCAAAACTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985272 25 + 10377808 GGCACCACAGACCGCTGCAAAACTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872720 25 - 8458610 GGCACCACAGACCGCTGCAAAACTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828458 25 + 75148670 GGCACCACAGACCGCTGCAAAACTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051611 24 + 4244037 GGCACCACAG-CCACTGCAAAACTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079758 25 + 4569836 GGCATCACAGACCGCTGCAAAACTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049002 25 - 159171411 AGCACTACAGACCACTGCAAAACTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771421 25 + 3513951 AGCACTACAGACCATTGCAAAACCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820306 25 + 1920343 AGTACTACAGACCATTGCAAAACCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932181 25 - 7032639 AGCACTACAGACCATTGCAAAACTC i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 337075 8 - 852752 -----------------CAGAGCTC i dasNov3.JH570468 C 0 I 585 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21358447 0 + 61074082 C e otoGar3.GL873537 22738891 0 + 28711273 C a score=502247.000000 s hg38.chr17_GL383564v2_alt 27081 48 + 133151 TGAAAATATTAACTGATGGTAATCG--------------CCATCAGTCTAGAAAGGCCCAAA- s panTro5.chr17 16220956 48 + 83181570 TGAAAATATTAACTGATGGTAATTG--------------CTATCAGTCTAGAAAGGCCCAAA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128309 48 + 83442489 TGAAAATATTAACTGATGGTAATTG--------------CTATCAGTCTAGAAAGGCCCAAA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963423 48 + 4267968 TGAAAATATTAACTGATGGTAATTG--------------CTATCAGTCTAGAAAGGCCCAAA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943124 48 - 2193130 TGAAAACATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGGCCCAAA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016424 48 - 77216781 TGAAAATATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGACCCAAA- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929022 48 - 80997621 TGAAAATATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGACCCAAA- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985297 48 + 10377808 TGAAAATATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGACCCAAA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872745 48 - 8458610 TGAAAATATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGACCCAAA- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828483 48 + 75148670 TGAAAATATTAAGTGATGGTAACTG--------------CTATCAGTCTAGAAAGACCCAAA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051635 48 + 4244037 TGAAAATATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGACCCAAA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079783 48 + 4569836 TGAAAATATTAAGTGATGGTAATTG--------------CTATCAGTCTAGAAAGGCCCAAA- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049027 48 - 159171411 TGAAAATATTAAATGATGGTGATTG--------------CTCTCAGTCTAGAAAGGCCCAAA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771446 48 + 3513951 TGAAAATATTAAATGATGGTGATTG--------------CTATCAGTCTAGAGAGGCCCAAA- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820331 48 + 1920343 TGAAAATATTAAATGATGGTGATTG--------------CTATCAGTCTAGAAAGGCCCCAA- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932206 48 - 7032639 TAAAAAGATTAAATGATGGTGATTG--------------CTATCAGTCTAGAAAGGCCCAAA- i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 337668 61 - 852752 TGAAAATGTT--GTGACAGTAACTGCTGCACCTGTCAGTCTATCAGATCAGCAAAGTTAAAAA i dasNov3.JH570468 I 585 T 646 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21358447 0 + 61074082 C e otoGar3.GL873537 22738891 0 + 28711273 C a score=251150.000000 s hg38.chr17_GL383564v2_alt 27129 24 + 133151 CAACCTGACCCGTCCAAGCTCCCC s panTro5.chr17 16221004 24 + 83181570 CAACCTGACCCGTCCAAGCTCCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128357 24 + 83442489 CAACCTGACCCGTCCAAGCTCCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963471 24 + 4267968 CAACCTGACCCGTCCAAGCTCCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943172 24 - 2193130 CAACCTGACCCATCCAAGCTTCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016472 24 - 77216781 CAACCTGACTCATCCAAGCTCCCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929070 24 - 80997621 CAACCTGACTCATCCAAGCTCCCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985345 24 + 10377808 CAACCTGACTCATCCAAGCTCCCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872793 24 - 8458610 CAACCTGACCCATCCAAGCTCCCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828531 24 + 75148670 CAACCTGACCCATCCAAGCTCCCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051683 24 + 4244037 CAACCTGACCCATCCAAGCCCCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079831 24 + 4569836 CAACCTGACCCATCCAAGCTCCCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049075 24 - 159171411 CAACCTGGTCCATCCAAGCTCCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771494 24 + 3513951 CAACCTGGTCCATCCAGGCTCCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820379 24 + 1920343 TAACCTGATCCATCCAAGCTCCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932254 24 - 7032639 CAACCAGGTCCATCCAAGCTCCCC i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 337083 24 - 852752 CTGCCAGCCCCTTCTAGAATACCC i dasNov3.JH570468 T 646 I 646 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21358447 0 + 61074082 C e otoGar3.GL873537 22738891 0 + 28711273 C a score=27424.000000 s hg38.chr17_GL383564v2_alt 27153 3 + 133151 AG-T s panTro5.chr17 16221028 3 + 83181570 AG-T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128381 3 + 83442489 AG-T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963495 3 + 4267968 AG-T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943196 3 - 2193130 AG-T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016496 3 - 77216781 AG-T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929094 3 - 80997621 AG-T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985369 3 + 10377808 AG-T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872817 3 - 8458610 AG-T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828555 3 + 75148670 AG-T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051707 3 + 4244037 AG-T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079855 3 + 4569836 AG-T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049099 3 - 159171411 AG-T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771518 4 + 3513951 AGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820403 3 + 1920343 AG-T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932278 3 - 7032639 AG-T i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 337753 3 - 852752 AA-C i dasNov3.JH570468 I 646 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21358447 0 + 61074082 C e otoGar3.GL873537 22738891 0 + 28711273 C a score=23951.000000 s hg38.chr17_GL383564v2_alt 27156 2 + 133151 AA s panTro5.chr17 16221031 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128384 2 + 83442489 AG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963498 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943199 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016499 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929097 2 - 80997621 AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985372 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872820 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828558 2 + 75148670 AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051710 2 + 4244037 AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079858 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049102 2 - 159171411 AA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771522 2 + 3513951 AA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820406 2 + 1920343 AA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932281 2 - 7032639 AA i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21358447 2 + 61074082 AA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337756 2 - 852752 AG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e otoGar3.GL873537 22738891 0 + 28711273 C a score=488762.000000 s hg38.chr17_GL383564v2_alt 27158 54 + 133151 GCTCCACTGGTAAGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAGTAGAA- s panTro5.chr17 16221033 54 + 83181570 GCTCCACTGGTAAGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAGTAGAA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128386 54 + 83442489 GCTCCACTGGTAAGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAGTAGAA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963500 54 + 4267968 GCTCCACTGGTAAGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAGTAGAA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943201 54 - 2193130 GCTCCACTGGTGAGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAATAGAA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016501 54 - 77216781 GCCCCACTGGTGGGTTCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACTATAGAA- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929099 54 - 80997621 GCCCCACTGGTGGGTTCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACTATAGAA- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985374 54 + 10377808 GCCCCACTGGTGGGTTCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACTATAGAA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872822 54 - 8458610 GCCCCACTGGTGGGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAATAGAA- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828560 54 + 75148670 GCCCCACTGGTGGGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAATAGAA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051712 54 + 4244037 GCCCCACTGGTGGGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAATAGAA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079860 54 + 4569836 GCCCCACTGGTGGGTCCT---GGCAGCTGTCTGGCTTGGAATTTGTAGACAATAGAA- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049104 50 - 159171411 GCCCCACTGGTGAGTCCT----GCAGCTCTCTGGCTTGAAATCTGCAGACAAT---T- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771524 53 + 3513951 GTCCCACTGGTGAGTCCC----GCAGCTCTCTGGCTTGAAATTTGCAGACAATAGAA- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820408 53 + 1920343 GCCCCCCTGGTGAGTCCT----GCAGCTCTCTGGCTTGAAATTTGCGGACAATAGAA- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932283 52 - 7032639 GCCCCACTGGTGAGTCCT----GAAGCT-TCTGGCTTGAAATTTGCAGACAATAGAA- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22738891 15 + 28711273 GCTCTGCTGG---GTCCC---------------------------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21358449 11 + 61074082 GTTCTGCTGGC----------------------------------------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337758 58 - 852752 GTTCCACTGGCAAGTCCTTCTGGCAGCTGTCCAGCTTGGACCTTGCAGGCGATAGACA i dasNov3.JH570468 C 0 T 709 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=1150102.000000 s hg38.chr17_GL383564v2_alt 27212 115 + 133151 CATGAAT--CAGAAGCCCCAGAACAGGTAACTTAaattgagcttttaggatgacatgcccattatgaacaaggcactg-gctgg--ggcttcgccgacattgtgtcacagggcaccacat s panTro5.chr17 16221087 115 + 83181570 CATGAAT--CAGAAGCCCCAGAACAGGTAACTTAAATTGAGCTTTTAGGATGACATGCCCATTATGAGCAAGGCACTG-GCTGG--GGCTTCGCCGACCTTGTGTCACAGGGCACCACAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128440 115 + 83442489 CATGAAT--CAGAAGCCCCAGAACAGGTAACTTAaattgagcttttaggatgacatgcccattatgagcaaggcactg-gctgg--ggcttcgccgacattgtgtcacagggcaccacat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963554 115 + 4267968 CATGAAT--CAGAAGCCCCAGAACAGGTAACTTAaattgagcttttaggatgacatgcccattatgagcaaggcactg-gctgg--ggcttcgccgacattgtgtcacagggcaccacat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943255 115 - 2193130 CATGAAC--CAGAAGCCCCAGAACAGGTTACTTAAATTGAGCTTTTAGGATGACATGCCCATTATGAGGAAGGCACTG-GCTGG--GGCTTCGCTGACATTGTGTCGCAGGGCACCACAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016555 115 - 77216781 CATGAAC--CAGAAGCCCCAGGACAGGTAACTTAaattgagcttttagaatgacatgcccattatgagcaaggcactg-gctgg--ggcttcgccgacattgtgtcacagagccccacat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929153 115 - 80997621 CATGAAC--CAGAAGCCCCAGGACAGGTAACTTAAATTGAGCTTTTAGAATGACATgcccattatgagcaaggcactg-gctgg--ggcttcgccgacattgtgtcacagagccccacat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985428 115 + 10377808 CAAGAAC--CAGAAGCCCCAGGACAGGTAACTTAaattgagcttttagaatgacatgcccattatgagcaaggcactg-gctgg--ggcttcgccgacattgtgtcacagagccccacat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872876 115 - 8458610 CATGAAC--CAGAAGCCCCAGGACAGGTAACTTAaattgagcttttagaatgacatgcccattatgagcaaggcactg-gctgg--ggcttcgccgacattgtgtcacagggccccacat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828614 115 + 75148670 CATGAAC--CAGAAGCCCCAGGACAGGTAACTTAAATTGAGCTTTTAGAATGACATgcccattatgagcaaggcactg-gctgg--ggcttcgccaacattgtgtcacagggccccacat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051766 115 + 4244037 CATGAAC--CAGAAGCCCCAGGACAGGTAACTTAAATTGAGCTTTTAGAATGACATGCCCATTATGAGCAAGGTACTG-GCTGG--GGCTTCGCCGACATTGTGTCACAGGGCCCCACAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2079914 115 + 4569836 CATGAAC--CAGAAGCCCCAGGACAGGTAACTTAaattgagcttttagaatgacatgcccattatgagcaaggcactg-gctgg--ggcttcgctgacattgtgtcacacggccccacat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049154 113 - 159171411 TCTGGACAACCGAAGCTCCAGAGCAGGTTGCTGAAATGGAGC-TTTAGGATGACATgcctattgtgagcaaggcactg-gttgg--ggctttgcagacat--tgtcac-gggccccacac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771577 113 + 3513951 CATGAAC--CAGAAGCTCCAGAACAGGTTGCTGAAATGGAGC-TTTAGGATGACATgcctattgtgagcaaggcactg-gctgg--ggcttcacagacactgtgtcat-gggccccacat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820461 113 + 1920343 CATGAAG--CAGAAGCTCCAGAACAGGTTACTGAAATGGAGC-TTTAGGATGACCTGCCTATTGTGAGCAAGGCACTG-GCTGG--GGCTTCGCAGACACTGTGTCAC-CGGCCCCGCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932335 113 - 7032639 CATGAAC--CAGAAGCTCCAGAACAGGTTACTGAAATGGAGC-TTTAGGATGACATGCCTATTGTGAGCAAGGCACTG-GCTGG--GGCTTTGCAGACACTGTGTCAC-GGGCCCCACAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22738906 95 + 28711273 ------C--CAGAAGTCCC---------TACTTAAGTCAAGCTGTTGTGATG----GCCCATGATGAGCGCGGCTCTG-TGCCG--AGCTCTGCGGAC-TTGTGACACAGGTCCCCACAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21358460 87 + 61074082 -----AC--C-----TCCTAGAATACTCTATTTAAAGTAAGC------------------ATGGTGAGCAAGGCATAGTGCTGG--GGCTTTATGGATCTTGTGACACAGCGTCCCACC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337107 82 - 852752 CATGTAT---------------------------------GTGTTCATGACCACATGCCCACTAAGAGTAAGACACTG-TTTTGGTGGCTTTACAGACATGGTG--ACAATCCCCCAA-- i dasNov3.JH570468 T 709 C 0 e mm10.chr11 22025191 2 - 122082543 I e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=364746.000000 s hg38.chr17_GL383564v2_alt 27327 29 + 133151 cagccctgc-aaagaagaagca---gctgttat s panTro5.chr17 16221202 29 + 83181570 CAGCCCTGC-AAAGAAGAAGCA---GCTGTTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128555 29 + 83442489 cagccctgc-aaagaagaagca---gctgttat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963669 30 + 4267968 cagccctgcaaaagaagaagca---gctgttat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943370 29 - 2193130 CAGCTCTGC-AAAGAAGCAGCA---GCTGTTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016670 29 - 77216781 cagccctgc-aaagaagcagca---gctgttat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929268 29 - 80997621 cagccctgc-aaagaagcagca---gctgttat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985543 29 + 10377808 cagccctgc-aaagaagcagca---gctgttat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1872991 29 - 8458610 cagccctgc-aaagaagcagca---gctgttat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828729 29 + 75148670 cagccctgc-aaagcagcagca---gctgttat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051881 29 + 4244037 CAGCCCTGC-AAAGAAGCAGCA---GCTGTTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080029 29 + 4569836 cagccctgc-aaagcagcagca---gctgttat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049267 29 - 159171411 cagccctac-aaagaagcagca---gctgttat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771690 29 + 3513951 cagccctac-aaagaagcagca---gctgttat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820574 28 + 1920343 CAGCCCTAC-AAAGAAGCAGCA---GCTGTCA- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932448 29 - 7032639 GAGCCCTAC-AAAGAAGCAGCA---GCTGTTAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22739001 32 + 28711273 CAACTCCAC-AAAGAAGCAACAATGGGTGTTAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025193 29 - 122082543 CAACTCTGC-AAGGAGAGAGCA---GCTGTTAT i mm10.chr11 I 2 C 0 s canFam3.chr9 21358547 23 + 61074082 AAACCCTGC-AAAGAGGGAGca---gc------ i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337189 29 - 852752 TAAGGCTGC-AAAGAGGGAATG---GCTGTTTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2941192 160 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=4592421.000000 s hg38.chr17_GL383564v2_alt 27356 336 + 133151 tattct--cagttGGTTACTGAGTCAAGACTTGAAAC-CTAGTCTCTTTGAACCAGATCCAAAGCCCGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGAcagtggttcttaaa-gcgtggtccgccagcaggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccacc-cctgact------------tactgaa-------ccagcattctgc--t-ttagcatgacttgcaggtgattctgatgttggttcaagtttgagaaac-actg---------------GGTTA--------GGAAGTTTATTTGAGGAATGAGCCCTTGACTAGCTAGACCCTCTACAGAA s panTro5.chr17 16221231 337 + 83181570 TATTCT--Cagttggtgactgagtcaagacttgaaac-ctagtctctttgaaccagatccaaagcccgttctttG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTCTAGGAcagtggttcttaaaagcgtggtccgccagctggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccacc-cctgact------------tactgaa-------ccagcattctgc--t-ttagcatgacttgcaggtgattctgatgttggttcaagtttgagaaac-actg---------------GGTTA--------GGAGGTTTATTTGAGGAATGAGCCCTTGACTAGCTAGACCCTCTACAGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128584 336 + 83442489 tattct--cagttGGTGACTGAGTCAAGACTTGAAAC-CTAGTCCCTTTGAACCAGATCCAAAGCCCGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTCTAGGAcagtggttcttaaa-gcgtggtccgccagctggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccacc-cctgact------------tactgaa-------ccagcattctgc--t-ttagcatgacttgcaggtgattctgatgttggttcaagtttgagaaac-actg---------------GGTTA--------GGAGGTTTATTTGAGGAATGAGCCCTTGACTAGCTAGACCCTCTACAGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3963699 335 + 4267968 tattct--cagatggtgactgagtcaagacttgaaac-ctagtctctttgaaccagatccaaagcccgttctttG--------GAAGCTTTGA-GGGGAAA--CAAATTAAACATGAGAAGGTTTAGGAcagtggttcttaaa-gcgtggtccgccagctggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccacc-cctgact------------tactgaa-------ccagcattctgc--t-ttagcatgacttgcaggtgattctgatgttggttcaagtttgagaaac-actg---------------GATTA--------GGAGGTTTATTTGAGGAATGAGCCCTTGACTAGCTAGACCCTCTACAGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943399 336 - 2193130 TATTCT--CAGCTCgtggctgagtcaagacttgaaac-ccagtctctttgaaccagatccaaagcctgttctttG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGAcagtggttcttaaa-gcgtggtccaccagctggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccacc-cctgact------------ttctgaa-------ccagcagtctgc--t-ttagcatgacttgcaggtgattctgatgttggttcaagtttgagaaac-actg---------------GGTTA--------GGAAGTTTATTTGAGGAATGAGCCCTTGACTAGCCAGACCCTCTACAGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30016699 336 - 77216781 tattct--cagctggtggctgagtcaagacttgaaac-ccagTCTCTTTGAACCAGAACCAAAGCCCGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGGcagtggttcttaaa-gcgtggccctccagccagtagcactggcattacctgagaacttgctagacatgtacattcttgagcaccagc-cctgact------------ttctgaa-------ccagcagtctgc--t-ttatcataatttgcaggtgattctgatgttggttcaagttcgagaacc-actg---------------GGTTA--------GGGGGTTTATTTGAGGAGTGAGCCCTTGACTAGCCAGATCCTCTACAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929297 336 - 80997621 tattct--caGCTGGTGGCTGAATCAAGACTTGAAAC-CCAGTCTCTTTGAACCAGAACCAAAGCCCGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGGcagtggttcttaaa-gcgtggccctccagccagtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccagc-cctgact------------ttctgaa-------ccagcagtctgc--t-ttatcatgacttgcaggtgattctgatgttggttcaagttcgagaacc-actg---------------GGTTA--------GGGGGTTTATTTGAGGAGTGAGCCCTTGACTAGCCAGATCCTCTACAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985572 330 + 10377808 tattct--cagctggtggctgagtcaagacttgaaac-ccagTCTCTTTGAACCAGAACCAAAGCCCGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGGcagtggttcttaaa-gcgtggtcctccagccagtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccagc-cctgact------------ttctgaa-------ccagcagtctgc--t-ttatcatgacttgcagg------tgatgttggttcaagttcgagaacc-actg---------------GGTTA--------GGGGGTTTATTTGAGGAGTGAGCCCTTGACTAGTCAGATCCTCTACAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873020 336 - 8458610 tattct--cagctggtggctgagtcaagacttgaaac-ccagTCTCTTTGAACCAGATCCAAAGCCTGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGGcagtggttcttaaa-gcgtggtcctccagccggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccagc-cctgact------------ttctgaa-------ccagcagtctgc--t-ttatcacgacttgcaggtgattctgatgttggttcaagtttgagaacc-actg---------------GGTTA--------GGGGGTTTATTTGAGGAGTGAGCCCTTGACTAGCCAGATCCTCTACAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64828758 336 + 75148670 tattct--cagctggtggctgagtcaagacttgaaac-ccagtctctttgaaccagatccaaagcccgttctttG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGGcagtggttcttaaa-gcgtggtcctccagccggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccagc-cctgatt------------ttctgaa-------ccagcagtctgc--t-ttatcatgacttgcaggtgattctgatgttggttcaagttcgagaacc-actg---------------GTTTA--------GGGGGTTTATTTGAGGAGTGAGCCCTTGACTAGCCAGATCCTCTACAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2051910 336 + 4244037 TATTCT--CTGCTGgtggctgagtcaagacttgaaac-ccagtctctttgaaccagatccaaagcccgttctttG--------GAAGCTTTGAGGGGGAAA--CAAATTGAACATGAGAAGGTTTAGGGcagtggttcttaaa-gcgtggtcctccagccggtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccagc-cctgact------------ttctgaa-------ccagcagtctgc--t-ttatcacgacttgcaggtgattctgatgttggttcaagttcgagaacc-actg---------------GGTTA--------GGGGGTTTATTTGAGGAGTGAGCCCTTGACTAGCCAGATCCTCTACAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080058 344 + 4569836 tattct--cagctggtggctgagtcaagacttgaaac-ccagTCTCTTTGAACCAGATCCAAAGCCGGTTCTTTG--------GAAGCTTTGAGGGGGAAA--CAAATTAAACATGAGAAGGTTTAGGGcagtggttcttaaa-gtgtcgtcctccagccagtagcactggcattacctgagaacttgctagacatgcacattcttgagcaccgcc-cctgact------------ttctgaa-------ccagcagtctgt--t-ttatcatgacttgcaggtgattctgatgttggttcaagttcgagaacc-actg---------------GGTTAGTTTATTTGGGGGTTTATTTGCGGAGTGAGCCCTTGACTAGCCAGATCCTCTACAGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049296 335 - 159171411 ttttct--cagctggtggctgagtcaagacttgaaac-ccagtctctttgaaccagatccaAAGTCCGTCCTTTG--------GAAGCTTTGAGGGGGAAA--TGAATTAGACATGAGAAGGTTTAGAAGACtggttcttaaa-gcatggtcctccaaccggtagcaccggcatcacctgagaactcgctagacatgcacgttcttgaacacca-c-cctgact------------ttcggaa-------acagcagtctgt--t-ttattgtgacttgcaggtgattctgatgttggttcaaacttgagaacc-actg---------------GGTTG--------GGGGGTTTATTTAAGGAGTGAGCCCCTGACTAGCCAGACCCTCTACAGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1771719 335 + 3513951 tattct--caGCCGGTGGCTGCGTCAAGACTTGAAAC-CCAGTCTCTTTGAACCAGATCCAAAGTCTGTCCTTTG--------GAAGCTTTGAGGGGGAAA--TGAATTAGACATAAGAAGGTTTAGAATagtggttcttaaa-gcgtggtcctccaaccggtagcaccggcatcacctgagaacttgctagacat--acattcttgagcaccacc-cctgact------------ttcggaa-------ccagcagtctgt--t-ttattatgacttgcaggtgattctgatgttggttcaagtttgagaaccaACTG---------------GGTTG--------GGTGGTTTATTTGAGGAGTGAGCCCCTGACTAGCCAGACCCTCTACAGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820602 333 + 1920343 --TTCT--CAGCTGAtggctgagtcaagacttgaaac-ccagtctctttgaaccagatccaAAGTCCGTCCTTCG--------GAAGCTTTGAGGGGAAAA--TGAATTAGACATGAGAAGGTTTAGAAGagtggctcttcaa--cgtggtcctccaaccggtagcactggcatcccctgagaacttgctagacacgcacattcttgagcaccacc-cctgatt------------tttggaa-------ccagcagtctgt--t-ttattatgacttgcaggtgattctgatgttggttcaagtttgagaacc-actg---------------GGTTG--------GGGGGTTTATTTGAGGAGTGACCCCCTGACTAGCCAGACCCTCTACAGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932477 344 - 7032639 TATTCT--GAGCTGgtggctgagtcaagacttgaaac-ccagtctctttgaaccagatccaaagtccatcctttGGAAGCTTTGAAGCTTTGAGGGGGAAA--TGAATTAGACATGAGAAGGTTTAGAAGagtggttcttaaa-gcgtggtcctccaaccggtagcaccggcatcacctgagaacttgctagacatgcacattcttgagcaccacc-cctgact------------ttcggaa-------ccagcagtctgt--t-ttattacgacttgcaggtgattctgatgttggttcaagtttgagaacc-aatg---------------GGTTA--------GGGGGTTTATCTGAGGAGTGAGCCCCTGACTAGCCAGACCCTCTATAGAA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2941352 334 + 8555354 tattct--cagctggtggctgagtcgagacttgaagccccagtctctttgaaccagatccaaagcccattcTTTG--------GAAGCTTTGAAGGGGAAA---ACATTAAACATAAGAAAGTTTATGGcagtggttctcaaa-gtgtggtcctccaaccagtagcactggcctcccctggggacttgctggaaatga-agttcttgagtgccacc-ccagcct------------ttctgaa-------tcagtattctgt--t-ttctagaggcttctaggtgactctgatgtaggctcaagttcgagaaTG-AGCG---------------GGCT---------GGAGGTATATTTGGGGAATGAGCCCCTGACTGGCCAGACACTCCACAGAA i proCoq1.NW_012135969v1 I 160 I 106 s otoGar3.GL873537 22739033 327 + 28711273 TGTTCT--CAGCTGGTGGCCGAGTCTAGACTTGAACCACAAGCCTCCTTGAACCAGATCCAAAGCTCATTCTTTG--------GAAGCTTTGAAAGAGAAA---AAATTAAATATGAGGAGGTTTAGGGcagcggttctcaaa-atgtggtcctccaaccagtggtgttggcatcagtagggaacttctggggaaagacaatccttgagtgcccctgctagcct------------ttctgaa-------tcagtattctgt--t-ttaccaagccttccaggtgattcttacataggctgaagtttgggaacA-AGTG---------------GGTTA--------GGTGATACA-GTAGGGAGTGAGCCCCTGCCTGACCAGAACC--------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025222 335 - 122082543 ---CCT--Tag----tggctgagtcaagacttgaacc-cctgtctctttgaaataggtccaaagtccattccTTG--------GAAGCTTTGAAGGGAAAA----AATTACAC---AGAAACTTTAGGGC--TGGTTctgaaa-ctgtggttctccggccagcagcaccagcatcggc-aagggcccgttggatgtgcgtaatttggagcctttcc-tcaaact------------ttctgaa-------tcagaagtctgc--tgttatcaaggctttcaggtgattctgatagatattcaagttggagGGTA-TCTATCAGAATAGAGGTCTGGGCA--------AGGTGTACATTTAGGGAATAAGCCCCTGTTTGGCCAGACACTATAGAG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21358570 245 + 61074082 ------------taatggctgaatcaagactcgaatc-ccagtctctttgaattaggtccaaagcctgtactttG--------GAAGCTTTGAAGGGAAAA---AAATTAAACATGAGAAGGGTTAGGGTagtggttcttaaa-gtgtggttctccaaccagcagtaccag-------------------------------------------gt-cct-----------------------------------------c--t---------------gggtgattct-atgcatactcaaatttgagagtc-actg---------------GGTTA--------GGGGTTTTATTTGGGGATTGAGCCTCTTATAGATGAGATACACTGCGGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337218 360 - 852752 TATTTTagttggtggtggctgagttaagacttgaagc-ttggtctctttgaactaggtccaaagcccatactttG--------GAAGCTTCAAAGGGGAAAAATAAAATAAAATCAAGAAGGGTTGGGGTGgtggttctaaat-gtgtggtctctgggccggcagcatcagt-tcagctgggaactcgttagaaatgcaaattctcaggccccttc-cctgactctgaatcagaaactccgaaggtgggcctagcagtctgtggt-tcatccagcgttccaggtgattctgatgcaagctcgagtttgagaacc-actg---------------GGTGA--------GGGGATTTATCTGGGGACTGAGTCCCTGAGTGGCCCGGCACTCTACAGGA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35856450 2477 - 65901067 I a score=1310866.000000 s hg38.chr17_GL383564v2_alt 27692 120 + 133151 AGGGCTGGCCTTGCCGTCCTGATATGTCC--TCCAG---TGAGGAATCCCTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAAACTCTGAAAATGTTACATGATAGTTATTT------ s panTro5.chr17 16221568 120 + 83181570 AGGGCTGGCCTTGCCGTCCTGATATGTCC--TCCAG---TGAGGAATCCCTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAAACTCTGAAAATGTTACATGATAGTTATTT------ i panTro5.chr17 C 0 C 0 s panPan2.chr17 16128920 120 + 83442489 AGGGCTGGCCTTGCCGTCCTGATATGTCC--TCCAG---TGAGGAATCCCTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAAACTCTGAAAATGTTACATGATAGTTATTT------ i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964034 120 + 4267968 ACGGCTGGCCTTGCCGTCCTGATATGTCC--TCCAG---TGAGGAATCCCTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAAACTCTGAAAATGCTACATGATAGTTATTT------ i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943735 120 - 2193130 AGGGCAGGCCTTGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCCTCATACCATCAGATCAGAATAGAGCCTTTCTCTTTTACATTGCAAAACTCTGAACATGTTACTTGATGGTTATTT------ i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017035 120 - 77216781 AGGGCTGACCTTGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCTTCATACCATCAGATCAGGATAGAACCTTTCTCTTTTACATTGCAAGACTCTGAAAATGTTAAATGATGGTTATTT------ i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929633 120 - 80997621 AGGGCTGACCTTGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCTTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAGACTCTGAAAATGTTAAATGATGGTTATTT------ i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1985902 120 + 10377808 AGGGCTGACCTTGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCTTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAGACTCTGAAAATGTTAAATGATGGTTATTT------ i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873356 120 - 8458610 AGGGCTGACCTTGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCTTCATACCTTCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAGACTCTGAAAATGTTAAATGATGGTTATTT------ i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829094 120 + 75148670 AGAGCTGACCTTGCCCTCCTGATATGTCC--TCCAG---CGAGGAATCATTCATACCATCAGATCAGGATAGAACCTTTCTCTTTTACATTGCAAGACTCTGAAAATGTTAAATGATGGTTATTT------ i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052246 120 + 4244037 AGGGCTGACCATGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCTTCATACCATCAGATCAGGATAGAGCCTTTCTCTTTTACATTGCAAGACTCTGAAAATGTTAAATGATGGTTATTT------ i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080402 120 + 4569836 ATGGCTGGCCTTGCCCTCCTGATATGTCC--TCCAG---TGAGGAATCCCTCATACCATCAGATCATGATAGAGCCTTTCTCTTTTACATTGCAAAACTCTGAAAATGTTAAATGATGGTTATTT------ i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049631 115 - 159171411 AGGGCTGGTCTTGCCCTCTTGGTATGTCA--TCCAG---TGAGGAATCCCTCATACC-----ATCAGGATGGAGCCTTTCTCTTTCACATTGCAAAACTCTGAAAATGTTTAATGGTGGTTATTT------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772054 115 + 3513951 AGGGCTGGTCTTGCCCTCTTGGTATGCCG--TTCAG---TGAGGAATCCCTCATACC-----ATCAGGATGGAGCCTTTCTCTTTCACATTGCAAAACTCTGAAAATGTTTAATGGTGGTTATTC------ i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1820935 115 + 1920343 AGGGCTGGTCTTGCCCTCTTGGTATGTCA--TCCAG---TGAGGAATCCCTCACACC-----ATCAGGATGGAGCCTTTCTCTTTCACGTTGCGAAACTCTGAAAATGTTTATTGGTGGTTATTT------ i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932821 115 - 7032639 AGGGCTGGTCTTGCCCTCTTGGTATGTCA--TCCAG---TGAGGAATCCCTCATACT-----ATCAGGATAGAGCCTTTCTCTTTCACATTGCAAAACTCTGAAAATGTTTAATGGTGGTTATTT------ i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22739360 113 + 28711273 --GTCTGGCCTTGCTCTCCTCGTAAGTCC--CATGG--CTGAGGAATCCCTCATACC-----TTTGAGACAGTGCCTTTTCCTGGCTCATTGCAAAA-TGTGAAAAGGTTAAATGATGGCAATTG------ i otoGar3.GL873537 C 0 I 14 s mm10.chr11 22025557 115 - 122082543 -GGTTTGGTCTTGTTTTCTTGATGCATCCAACCCATGGTTGAGGAGTGCTCTGTGCC-----ATGGAGACAG----TATCTCTTGTGCATCCAGAAACTCTTAAAGTGTGAAATGATGGTGCCTG------ i mm10.chr11 C 0 I 14 s canFam3.chr9 21358815 98 + 61074082 GGAGATGACCGAAGTCTCTTACAGATCCC--ATGTG---TGAAGA----------------------GAAAGTGCCTTTCCTCTGCATGCTGTGAAGTACTGAATGCATTAAATCATGGTGGTTG------ i canFam3.chr9 C 0 I 14 s dasNov3.JH570468 337578 119 - 852752 GGGGCTAGCCTTGCTCTCCCAATAATTCC--CACAG--GTAGGGAATCTCTCAGAC------ATCAATATTGTGCTTTTCCCCTGCTCATCAGGAAACTCTGAAAATGTT--GTGACAGTAACTGCTGCAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2941686 106 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=670712.000000 s hg38.chr17_GL383564v2_alt 27812 45 + 133151 CTATCAGTCTA---------GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC s panTro5.chr17 16221688 45 + 83181570 CTATCAGTCTA---------GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129040 45 + 83442489 CTATCAGTCTA---------GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964154 45 + 4267968 CTATCAGTCTA---------GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943855 45 - 2193130 CTATCAGCCTA---------GAAAGACCCAAACAAGCTGACCCAT--CCAATCTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017155 49 - 77216781 CTATCAGTCTA--GGAC---GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929753 49 - 80997621 CTATCAGTCTA--GGAC---GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986022 49 + 10377808 CTATCAGTCTA--GGAC---GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873476 49 - 8458610 CTATCAGTCTA--GGAC---GAAAGGCCCAAACAAGCTGACCCAT--CCAATCTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829214 49 + 75148670 CTATCAGTCTA--GGAC---GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052366 49 + 4244037 CTATCAGTCTA--GGAC---GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080522 45 + 4569836 CTATCAGTCTA---------GAAAGGCCCAAACAAGCTGACCCAT--CCAACCTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049746 45 - 159171411 CTATCAATCTA---------GAAGGGCCCAAACAAGCTGACCCAT--CCAACCTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772169 45 + 3513951 CTATCAGTCTA---------GAAGGGCCCAAACAAGCTGACCCAT--CCAACCTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821050 45 + 1920343 CTATCAGTCTA---------GAAGGGCCCAAACAAGCTGACCCAT--CCAACCTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932936 45 - 7032639 CTATCAGTCTA---------GAAGGGCCCAAACAAGCTGACCCAT--CCAACCTCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2941792 45 + 8555354 CTATCACTCTA---------GAAAGGCCCAAACAAGCTGACCCAC--CCAAACTCC i proCoq1.NW_012135969v1 I 106 I 78 s otoGar3.GL873537 22739487 47 + 28711273 CTATTAGTTCA---------GAAAGGTTCAAGCAAGCTGACTCCTCACCCACCTCT i otoGar3.GL873537 I 14 C 0 s mm10.chr11 22025686 45 - 122082543 CTGTAAGTCTG---------GAGTGGTCCAGATGTACCGGTCCAC--TCGAGCTCC i mm10.chr11 I 14 C 0 s canFam3.chr9 21358927 41 + 61074082 CTATCAGTCTA---------GAAAAGGCCAAATG----GACCCAC--CCAAGCTCC i canFam3.chr9 I 14 C 0 s dasNov3.JH570468 337697 54 - 852752 CTGTCAGTCTATCAGATCAGCAAAGTTAAAAACAAGCTGACCCAC--CCAAGCTCC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35856450 2477 - 65901067 I a score=1086697.000000 s hg38.chr17_GL383564v2_alt 27857 96 + 133151 CCAGTAACCCCCATTGGTGAG----TCCTTATGGCAACTGTCTGT--CTTGGAATTTGCAGATGGTAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCG s panTro5.chr17 16221733 96 + 83181570 CCAGTAACCCCCATTGGTGAG----TCCTTATGGCAACTGTCTGG--CTTGGAATTTGCAGATGGTAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129085 96 + 83442489 CCAGTAACCCCCATTGGTGAG----TCCTTATGGCAACTGTCTGG--CTTGGAATTTGCAGATGGTAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964199 96 + 4267968 TCAGTAACCCCCATTGGTGAG----TCCTTGTGGCAACTGTCTGG--CTTGGAATTTGCAGACGGTAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943900 96 - 2193130 CCAGTAACCCCCATTGGTGAG----TCCTTCTGGCAACTGTCCAG--CTTGGAATTTGCAGACGGTAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017204 96 - 77216781 CCAATAACTCCCGTTGGTGAG----TCCTTCTGGAAACTGCTCAG--CTTGGAATTCGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929802 96 - 80997621 CCAATAACTCCCGTTGGTGAG----TCCTTCTGGAAACTGCTCAG--CTTGGAATTCGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986071 96 + 10377808 CCAATAACTCCCGTTGGTGAG----TCCTTCTGGAAACTGCTCAG--CTTGGAATTCGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873525 96 - 8458610 CCAATAACTCCCGTTGGTGAG----TCCTTCTGGAAACTGCTCAG--CTTGGAATTCGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829263 96 + 75148670 CCAATAACTCCCGTTGGTGAG----TCCTTCTGGAAACTGCTCAG--CTTGGAATTCGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052415 96 + 4244037 CCAATAACTCCCGTTGGTGAG----TCCTTCTGGAAACTGCTCAG--CTTGGAATTCGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080567 96 + 4569836 CCAGTAACCCCCATTGGTGAG----TCCTTCTGGCAACTGCTCAG--CTTGGAATTTGTAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATATCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049791 88 - 159171411 CCAGTAACCCCCACTGG------------ACTGGCAACTGTCCTG--CTTGGAATTTGCAGACAATAGA-ACATGAATCAAAAACCCCATAT---------------TTTGGTACCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772214 96 + 3513951 CCAGTAACCCCCACTGGTGAG----TCCTTCTGGCAACTGTCCTG--CTTGGAATTTGCAGATAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821095 96 + 1920343 CCAGTAACCCCCACTGGTGAG----TCCTTCTGGCAACTGTCCTG--CTTGGAATTTGCAGACAATAGA-ACATGAATCAAAAGCTCCATAT---------------TTTGATAGCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6932981 96 - 7032639 CCAGTAACCCCCACTGGTGAG----TCCTCCTGGCAACTGTCCTG--CTTGGAATTTGTAGACAATAGA-ACATGAATCAAAGTCTCCATAT---------------TTTGATAGCCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22739534 111 + 28711273 CAGACAAGCTCCACTAGTGAG----TTC-TCTGGCAGCTGCCCAG--CTTCGAATTTGCAGGCCATAGACACTTGACCCAGAATCTCTAAGTTAAATTAAATAGAGGTTTGGGGACAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025731 101 - 122082543 CTAAGAAGTTCCACTCGTGAGTGTATTTTTCTGGCAGCTGCCTTGGCCTAGGACCCCAAGGAAACTGGC-ACATAATCTGGATATTCCATAC------------AAGGCTGAAG---- i mm10.chr11 C 0 C 0 s canFam3.chr9 21358968 96 + 61074082 CTCATGGGCCTCACTAGCAAG----CCC-CCTGGCAGCTGCTTGG--CTTGGACCTTATAGGCAGTAGACACATGGACCAGAAGCTCCATAT---------------TTAGGCAGCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 337751 97 - 852752 CCAACAGGTTCCACTGGCAAG----TCCTTCTGGCAGCTGTCCAG--CTTGGACCTTGCAGGCGATAGACAACTGAACCAGAAGCTCCGCAT---------------TCAGGCCGCCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2941837 78 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=1081971.000000 s hg38.chr17_GL383564v2_alt 27953 81 + 133151 TGGC-TGAGAATCAGCACATCTCCAGAATTCAGCATCACAGCTGGCCAGAGAAgagaagcagtgagttccctatccttggag s panTro5.chr17 16221829 81 + 83181570 TGGC-TGAGAATCAGCACATCCCTAGAATTCAGCATCACAGCTGGCCAGAGAAgagaagcagtgagttccctatccttggag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129181 81 + 83442489 TGGC-TGAGAATCAGCACATCCCTAGAATTCAGCATCACAGCTGGCCAGAGAAgagaagcagtgagttccctatccttggag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964295 82 + 4267968 TGGCTTGAGAATCAGCACATCCCCAGAATTCAGCATCACAGCTGGCCAGAGAAgagaagcagtgagttccctatccttggag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1943996 81 - 2193130 TGGC-TGAGAATCAGCACATCCCCAGAATTCAGCATCACAGCTGGCCAGAGAAgagaagcaatgagttccccgtccttggag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017300 74 - 77216781 TGGC-TGAGAATCAGCACATGACCAGAATTCAGCGTTACAgctggccagagaagca-------gagttccccatccttggag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929898 74 - 80997621 TGGC-TGAGAATCAGCACATGCCCAGAATTCAGCGTTACAgctggccagagaagca-------gagttccccatccttggag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986167 74 + 10377808 TGGC-TGAGAATCAGCACATCCCCAGAATTCAGCGTTACAgctggccagagaagca-------gagttccccatccttggag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873621 74 - 8458610 TGGc-taagaatcagcacatccccagaattcagcattacagctggccagagaagca-------gagttccccatccttggag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829359 74 + 75148670 TGGC-TGAGAATCAGCACATCCCTAGAATTCAGCGTTACAgctggccagagaagca-------gagttccccatccttggag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052511 74 + 4244037 TGGT-TGAGAATCAGCACATCCCCAGAATTCAGCATTACAgctggccagagaagcg-------gagttccccatccttggag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080663 74 + 4569836 TGGC-TGAGAATCAGCACATCCCCAGAATTCAGCATTACAgctggccagagaagca-------gagttccccatccttggag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049879 81 - 159171411 TGGC-TGAGAATCAGCACATGCCCAGAATTCAGaatcacagctggccagagaagagaagcagtgagttccccgtccttggag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772310 81 + 3513951 TGGC-TGAGAATCAGCACATCCCCGGAATTCAGGATCACAGCTGGCCAGAGAAgagaagcagtgagttccccgtccttggag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821191 81 + 1920343 TGGC-TGAGAATCAGCACATCCCCAGAATTCAGGATCACAGCTGGCCAGAGAAgagaagcagtgagttccccgtccttggag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6933077 81 - 7032639 CGGC-TGAGAATCAGCACATCCCCAGAATTCAGaatcacagctggccagagaagagaagcagtgagttccccatccttggag i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2941915 81 + 8555354 TGGC-TGAGGACCGGCACATCTCCAGAATTCAGCGTCATAGATGGCCAGAGATgaggagcagtgagttccccatcactggag i proCoq1.NW_012135969v1 I 78 C 0 s otoGar3.GL873537 22739645 78 + 28711273 CAGG-TGAGGACCAGCACCTCTCCAGAATTCAGTATCACAGATGACCAGA---gagaagcagtgagctccccatcattggag i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025832 69 - 122082543 TGGC-CAAGAACAAACAGGTCTCCAGAATTCAACATCATAGCTGACCAAAGATGAGAAG------------CATCTCTGGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21359064 80 + 61074082 TGGC-CAAGAA-CAGCGTATCTCCAGAAAGCAGagtcagagctggccaaaggtgagaagcagtgagctccccatcattggag i canFam3.chr9 C 0 I 6 s dasNov3.JH570468 337848 75 - 852752 -----TGAGAACCTGCGC-TCTCGGGAACTCAGCATCACAACTGGCCAAAGAGgggaagcag-aatgtccccacgcttggaa i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35856450 2477 - 65901067 I a score=212340.000000 s hg38.chr17_GL383564v2_alt 28034 16 + 133151 ----ac----aagcagaggcttca s panTro5.chr17 16221910 16 + 83181570 ----ac----aagcagaggcttca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129262 16 + 83442489 ----ac----aagcagaggcttca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964377 16 + 4267968 ----ac----aagcagaggcttca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1944077 16 - 2193130 ----ac----aagcagaggcttca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017374 16 - 77216781 ----ac----aagcagaggcttca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929972 16 - 80997621 ----ac----aagcagaggcttca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986241 16 + 10377808 ----ac----aagcagaggcttca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873695 16 - 8458610 ----ac----aagcagaggcttca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829433 16 + 75148670 ----ac----aagcagaggcttca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052585 16 + 4244037 ----ac----aagcagaggcttca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080737 16 + 4569836 ----ac----aagcagagacttca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049960 16 - 159171411 ----ac----aagcagaggcttca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772391 16 + 3513951 ----ac----aggcagaggcttca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821272 16 + 1920343 ----ac----aagcagaggcttca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6933158 16 - 7032639 ----ac----aagcagaggcttca i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2941996 20 + 8555354 ----acattcaagcagaggcttca i proCoq1.NW_012135969v1 C 0 I 98 s otoGar3.GL873537 22739723 20 + 28711273 ----gcatataagcagaggcttca i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025901 20 - 122082543 ----CTATTTAAAAGGATGTTTTA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 337923 20 - 852752 agattc----aggcagggggtttc i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21359144 6 + 61074082 I a score=822648.000000 s hg38.chr17_GL383564v2_alt 28050 68 + 133151 gaatca-ctgatggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtag------------c s panTro5.chr17 16221926 68 + 83181570 gaatca-ctgatggggatgttgaggggaacacttagggaactgatgggt-ctg--------gtt-----gagatggctgtag------------c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129278 68 + 83442489 gaatca-ctgatggggatgttgaggggaacacttagggaactgatgggt-ctg--------gtt-----gagatggctgtag------------c i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964393 69 + 4267968 gaatca-ctgatggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgcag-----------cc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1944093 80 - 2193130 gaatca-ctgatggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtaggaggtcttctagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017390 80 - 77216781 gaatca-ctggtggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtaagaggtcttctagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27929988 80 - 80997621 gaatca-ctggtggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtaagaggtcttctagc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986257 80 + 10377808 gaatca-ctggtggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagacggctgtaagaggtcttctagc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873711 80 - 8458610 gaatca-ctggtggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtaagaggtcttctagc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829449 80 + 75148670 gaatca-ctggtggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtaagaggtcttctagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052601 80 + 4244037 gaatca-ctggtggggatgttgaggggaacacttagggaactgatgggg-ctg--------gtt-----gagatggctgtaagaggtcttctaac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080753 80 + 4569836 gaatca-ctggtggggatgttgaggggaacacttacggaactgatgggg-ctg--------gtt-----gagatggctgtaagaggtcttctagc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46049976 79 - 159171411 gaatca-ctggtggggatgttgagggg-acactcagggaactgatgggg-ctg--------gtt-----gagatggcTGTAGGAGGTCTTCTGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772407 77 + 3513951 gaatca-ctggtggggatgttgagggg-aCACTCAGGGGACTGATGGTTCCTG--------GTT-----GAGATGGCTGT---AGGTCTTCTGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821288 79 + 1920343 gaatca-ctggtggggatgttgagggg-acacttaggaaactgatgggg-ctg--------gtt-----gagatgGTTGTAGGAGGTCTTCTGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6933174 79 - 7032639 gaatca-ctggtggggatgttgagggg-acacttagggaactgatgggg-ctg--------gtt-----gagatggcTGTAGGAGGTCTTCTGGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22739743 89 + 28711273 ccaccacctggtggggatgttgagaggctcacccaggcatctgatgggg-ctggtgtgacagtt-----gtgatggctgaggagggtcttctagc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025921 73 - 122082543 TAACCT-C------------CAAGGAGGGCATTCAGGTATTTGATGGGG-CTG--------GGTGTGAGGTGATGGAGGCAGTCAGTCTTCTGGC i mm10.chr11 C 0 C 0 s dasNov3.JH570468 337943 68 - 852752 caaccc-cctgggggaatgctgagggaggaactcatgcatccgatgtgg-ctg--------ggt-----gagatgacctTAGA------------ i dasNov3.JH570468 C 0 I 249 e proCoq1.NW_012135969v1 2942016 98 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21359144 6 + 61074082 I a score=102814.000000 s hg38.chr17_GL383564v2_alt 28118 19 + 133151 c----ccc-ctaactctgtgcgtc s panTro5.chr17 16221994 19 + 83181570 c----ccc-ctaactctgTGCGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129346 19 + 83442489 c----ccc-ctaactctgTGCGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964462 19 + 4267968 c----ccc-ctaactctgtgcgtc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1944173 19 - 2193130 c----ccc-ccaactctgTACATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017470 19 - 77216781 c----ccc-acaactctgtACATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27930068 19 - 80997621 c----ccc-acaactctgtACATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986337 19 + 10377808 c----ccc-acaactctgtACATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873791 19 - 8458610 c----ccc-acaactctgtgCATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829529 19 + 75148670 c----ccc-acaactctgtgTATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052681 19 + 4244037 c----ccc-acaactctgtgCATC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080833 19 + 4569836 c----ccc-acaactctgtgCATC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46050055 18 - 159171411 CACCGTCC-CCAACTCTGC----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772484 18 + 3513951 CACTGCCC-CCAACTCTGC----- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821367 18 + 1920343 CACCGCCC-CCAACTCTGC----- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6933253 18 - 7032639 CACCACCC-CCAACTCGGC----- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22739832 18 + 28711273 c-----cc-ccaactctgtggtcc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22025994 17 - 122082543 T----CCTACCCTCTCTGAAC--- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 338260 19 - 852752 C----TCC-CAAACTCAATGGCTC i dasNov3.JH570468 I 249 C 0 e proCoq1.NW_012135969v1 2942016 98 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21359144 6 + 61074082 I a score=4926367.000000 s hg38.chr17_GL383564v2_alt 28137 390 + 133151 cctgctttctatGTCTTATTGATCAGTGAAACCACAGGCATTGAAGTGGAACCACCAAATCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCC-CTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAATTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGCGGTGTGG-TGCTGGAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTTGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACACTGGGATTTCCAGCATAGGAAGCCCAAGAAG--------GGTCAGAGGCTGCCAC---GCCCTCCCC-------- s panTro5.chr17 16222013 390 + 83181570 CCTGCTTTCTACGTCTTATTGATCAGTGAAACCACAGGCATTGAAGTGGAACCACCAAATCTACTTTAGGAGCTAGTTTTGGTCTTC-CCTTTCC-CTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAATTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGCGGTGTGG-TGCTTGAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTTGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCATTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACACTGGGATTTCCAGCATAGGAAGCCCAAGAAG--------GGTCAGAGGCTGCCAC---GCCCTCCCC-------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129365 390 + 83442489 CCTGCTTTCTACGTCTTATTGATCAGTGAAACCACAGGCATTGAAGTGGAACCACCAAATCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCC-CTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAATTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGCGGTGTGG-TGCTTGAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTTGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCATTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACACTGGGATTTCCAGCATAGGAAGCCCAAGAAG--------GGTCAGAGGCTGCCAC---GCCCTCCCC-------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964481 390 + 4267968 cctgctttctatGTCTTATTGATCAGTGAAACCACAGGCATTGAAGTGGAACCACCAAATCTCCTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCC-CTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAATTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGGTGTGG-TGCTGGAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTTGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACACTGGGATTTCCAGCATAGGAACCCCAAGAAG--------GGTCGGAGGCTGCCAC---GCCCTCCCC-------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1944192 385 - 2193130 CCTG----CTAAGTCTTACTGATCAGTGAAGCCACAGGCACTGAAGTGGAACCACCAAACCTACTCTAGGAGCTGGTTTTGCTCTTC-CCTTTCTGCTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAATTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCTGGAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTTGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCCCATGT--ACATAGGACTGATCTGCTT--GAGACATTGGAATTTCCAGCATAGGAAGCCCAAGAAG--------GGTCAGAGGCTGCCAC---ACCCTCCCC-------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017489 391 - 77216781 CCTGCTTTATAAGTCTTATTGATCAGTGAATCCACAAGCATTGAAGTGGAATCACCAAACCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAAGTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCCGGAGTGATCACAGTCCCTAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACATTAGGATTTACAGCATAGGAAGCCCAGGAAG--------GGTCAGAGGTGGCCAC---ACCCTCCCT-------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27930087 391 - 80997621 CCTGCTTTATAAGTCTTATTGATCAGTGAATCCACAAGCATTGAAGTGGAATCACCAAACCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAAGTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCCGGAGTGATCACAGTCCCTAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACATTAGGATTTACAGCATAGGAAGCCCAGGAAG--------GGTCAGAGGTGGCTAC---ACCCTCCCT-------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986356 391 + 10377808 CCTGCTTTATAAGTCTTATTGATCAGTGAATCCACAAGCATTGAAGTGGAATCACCAAACCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAAGTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCCGGAGTGATCACAGTCCCTAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACATTAGGATTTACAGCATAGGAAGCCCAGGAAG--------GGTCAGAGGTGGCCAC---ACCCTCCCT-------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1873810 391 - 8458610 CCTGCTTTATAAGTCTTATTGATCAGTGAATCCACAAGCATTGAAGTGGAATCACCAAACCTACTTTAGGAGTTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGCTTGCTGAAAAAGTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCCGGAGTGATCACAGTCCCTAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTTT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACATTAGGATTTACAGCATAGGAAGCCCAGGAAG--------GGTCAGAGGTGGCCAC---ACCCTCCCT-------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829548 391 + 75148670 CCTGCTTTATAAGTCTTATTGATCAGTGAATCCACAAGCATTGAAGTGGAATCACCAAACCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGTTTGCCGAAAAAGTTACAAGTACAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCTGGAGTGATCACAGTCCCTAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACATTAGGATTTACAGCATAGGAAGCCCAGGAAG--------GGTCAGAGGTGGCCAC---ACCCTCCCT-------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2052700 391 + 4244037 CCTGCTTTATAAGTCTTATTGATCAGTGAATCCACAAGCATTGAAGTGGAATCACCAAACCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAAGTTACAAGTATAGCTGGTTCTGGTTTAATCCAGGTCT--TCCTGATACAGAGCTGTGG-TGCCGGAGTGATCACAGTCCCTAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACATTAGGATTTACAGCATAGGAAGCCCAGGAAG--------GGTCAGAGGTGGCCAC---ACCCTCCCT-------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2080852 391 + 4569836 CCTGCTTTATAAGTCTTATTGATCAGTGAAACCACAAACATTGAAGTGGAATCACCAAACCTACTTTAGGAGCTGGTTTTGGTCTTC-CCTTTCTGTTCTGTGAATTCTCTGAATCACTGTAGTTTGCTGAAAAATTTACAAGTATAGCTAGTTCTGGTTTAATCCAGGTAT--TCCTGATACAGAGCTGTGG-TGCCGGAGTGATCCCAGTTCCTAGCCCCAGGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----GCTCTTCCTCCAACTA-CTCTCAAGCCCAGCGTCCTACTTGT----TGGTCACTGCTCATGT--ACATAGGACTGATCTGCTTGAGAGACGTTAGGATTTACAGCATAGGAAACCCAGGAAG--------GGTCAGAGGCGGCCAC---ACCCTCCCT-------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46050073 386 - 159171411 ------TTCTAAGTCTTCTTTAACAGTGAAACCACAGGCATTGAAGTGGAACCACCAAACCTACTCTAGAAGCTGGTTTT-GCCTTC-CCTTTCTGTTCTGTAAATTCTCTGAATCACCGTAGTCTGCTGAAAAATTTACAAGTACAGCTAATGCTGGTTTAATCTAGCCTT--TCTTGGTACAGAGCTGTGG-TGCTGAAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCGTAAGTGATAATCTGGTT----GCTTTGCCTCCAACTG-CTCTCAAGCCCAGGGTCCTACTTGT----TGGTCACTGCTCATGTAAATACAGGATGGATTTGCCTGAGAGACATTGGTATTTCCAGCATAGGAAGCCCAGAAAG--------GGTCAGAGGCTACCAC---AGCCTCGCC-------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772502 388 + 3513951 ------TTCTAAGTCTTCTTGATCAGCGAAACCACAGGCATTGAAGTGGAACCACCAAACCTACTCTAGAAGCTGGTTTTCGCCTTC-CCTTTCTGTCCTGTAAATTCTCTGAATCACCATAGTTTGCTGAAAAATTTACAAGTACAGCTAATGCTAGTTTAATCCAGCTTT--TCTTGGTACAGAGCTGTGG-TGCCGAAGTGACCACAGTCCCGAGTCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTC----ACTCTGCCTCCAACTGTTTTTCAAGCCCAGGGTCCTACTTGT----TGGTCACTGCTCATGTAGAAACAGGATGGATTTGCTTGAGAGACATTGGTATTTCCAGCCTAGGAAGCCCAGAAAG--------GGTCAGAGGCTGCCAC---AGCCTCCCT-------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821385 387 + 1920343 ------TTCTAAGTCTTCTTGATCAGTGAAACCACAGACATTGAAGTGGAACCACCAAATGTACTCTAGAAGCTGGTTTTCGCCTTC-CCTTTCTGTTCTGCAGATCCTCTGAATCACCATAGTTAGCTGAAAAATTTACAAGTACAGCTAATGCTGGTTTAATTCAGCCTT--TCTTGGTACAGAGCTGTGG-TGCTGAAGTGACCACAGTCCCGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTC----GCTCTGCCTCCAACTG-CTCTCAAGCCCAGGGTGCTACTTGT----TGGTCACTGCTCATGTAGATATAGGATGGATTTGCCTGAGAGACATTTGTATTTCCAGCATAGGAAGCCCAGAAAG--------GGTCAGAGGCTGCCAC---AGCTTCCCC-------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6933271 386 - 7032639 ------TTCTAAGTCTTCTTGATCAGTGAAACCACAGGCATTGAAGTGGAACCACCAAACCTACTCTAGAAGCTGGTTTTCGCCTTC-CCTTGCTGTTCTGTAAATTCTCTGAATCACCGTAGTTTGCTGAAAAATTTACAAGTACAGCTAATGCTGGTTTAATCCAGCAGT--TCTTGGTACAGAGCTGTGG-TGCCGAAGTGACCACAGTCCTGAGCCCCAAGGCTGGAGGGAGCTTAAGTGAGAATCTGGTT----TCTCTGCCTCCAACTG-CTCTCAAGCCC-GGGTCCTACATGT----TGGTCACTGCTCATGTAGATATAGGATGGATTTGCCCAAGAGACATTGGTATTTCCAGCATAGGAAGCCCAGAAAA--------GGTCAGAGGCTGCCAC---AGCCTCCCC-------- i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2942114 391 + 8555354 CCTGCATTCTAGGTGTTATTCGTCAGTGAAACCACAAGTGTTAAAGTGGAGCCACTAAACCTACTCTAGGAGCTGGTTTTTGTCTTT-CCTCTCTGCTCTGTGAACCCTCCGAATTGTAATAGCTTGCTGAGAAATTTACAAGTACAGTTGATGGTGGTTTAATCCAGCCCA--TCCTGGTGTGGGGCTATGG-TGCAGGAGTGACCACAGTCCCCAGCCCAAAGGGTGGAGAGGGTTTGAGAAAGAATCTGGTT----TCTCTGTCTCCAGCTG-CTCTCGAGCCCAGAATACTACCTGT----TGGCTGCTGTCTATGT--GGACAGGACTGATTTGCTTGGGTGGCATCAGGACTTCCATCACAGGGAGCTCAGAAAG--------GGTCAGAGGCTGCTGC---ACCCTCCCC-------- i proCoq1.NW_012135969v1 I 98 C 0 s otoGar3.GL873537 22739850 376 + 28711273 cctgagttctaAGTCTTATTTGTCAGTGAAATCACAAATGTTAAAGGGGAGCCACTAAACCTAAGCTAGGAGCCACTTTTTGTC--C-CCTGTCTGTTCTGTGACCTCTCTGAATTGCAGTACCTTGGTGAGAAATTTACAAATACAGCTGATTGTGGTTTAATCCAGCCCA--TTCTGGTATGGGGCTGCGA-TGCATGAGTGACCACAGTCCCAAGCCCCAAGGGTGAAGAGGGCTTGAG--GGGATCTGCTT----TGTCT--------CTA-CTCTTGAGCCCAAAG--------AG----TAGCCACTGTCCATGT--GGACAGGACTAATGTGCTTGGGTGGCATCAGGA---CCATCACAAGAAGCTCAGGAAGCTCAAAGCTGACAGGGGCTGCCAC---ACCCTCCCT-------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22026011 368 - 122082543 CCTGCTTCCTGGTTCTTACTCACCAGCGAAACCACAAGTGCT--------------------------TGAGCAGGCTTTGCTCCCCACCCTCCTGCTCTGTAAACGCTACAAATTACAGTAGCTGGCTGCGAAGCCTGCAAGGACAGCTGGCGGTGGTTTAATCCAGCCCCTATCCTGGTAGGGAGCTTGGG-TACAGAAGTGGCCATAGTCTCAAGCTCCAATGGTAAAGGGAGAGCAAGTGAGAATGTGGCT----GCTCTGCCTGTAATTA-TTCTCAACCTTAGACTCCT-CTTGTCCACTGGCAACTGTCCACGT--G---GGCTCTGATTTGGTTGTGAGGACTTGAGACGTTTCCCATGGGATGCTCAGGGAA--------GGTCAGAGGCTGTCAC---ACTCTCCTC-------- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 338279 395 - 852752 CCTGTTTTCTAGGTCTTATTTGGTTGTGAAACTACAAGTATTAAAGTGAAACCA-GAAACCTGTCCCAGGAGCTCATTCTTACCTTC-CCTCTCTGCTCCCTAAA--CTCTGAATCGGAGCAGCTTGCTGAGAAATTTACAAGTATAGCTGATGGCTGTTTAGACCTGATCC--TCCTGGAACAGGGCTATGGCTGCAGGAGTGACCACAGTCCCAAACCCCAAGTCTGGGCAG---TTTAGTGACAACCTGGTTCCTCTCTCTGCCTCCAGGCC-CTCTCCAGTCCAG-----TTCATGT----TGACCACTGTCCATGC--AGACAGGACTGGTTTGCTTGGGAGGCATCGGGACTTCCACGGTAGGAAGATCTGGAAG--------GGTAAG-GGCTGCCATTGGCCCCGCCCCTATGCCCC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35856450 2477 - 65901067 I e canFam3.chr9 21359144 6 + 61074082 I a score=6424768.000000 s hg38.chr17_GL383564v2_alt 28527 427 + 133151 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAACTGTTTTGGCACACGTGACACACCCCTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAAGAGCCATCTCGATTAGTCTTAATTTAGTA----CCTGACCCAGCTGCCCTCA--TCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacggcacaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttaagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACAGTACA-------------------------------TGTGT------GTGTGTG s panTro5.chr17 16222403 425 + 83181570 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAACTGTTTTGGCACACGTGACACACCCCTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAAGAGCCATCTCGATTAGTCTTAATTTAGTA----CCTGACCCAGCTGCCCTCA--TCT----CCTTTGTACTT-AAATAGCTCCTTTCATCCAACAAGTTCAAAGCTGTC---TAACAAAATAAACCCACTTATTCTTGCACC--ATGACGGCGTAggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttaagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACAGTA---------------------------------TGTGT------GTGTGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16129755 425 + 83442489 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAACTGTTTTGGCACACGTGACACACCCCTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAAGAGCCATCTCGATTAGTCTTAATTTAGTA----CCTGACCCAGCTGCCCTCA--TCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacggcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttaagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACAGTA---------------------------------CGTGT------GTGTGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3964871 427 + 4267968 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAACTGTTTTGGCACACGTGACACACCCCTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGCCATCTCGATTAGTCTTAATTTAGTA----CCTGACCCAGCTGCCCTCA--TCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacggcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccaatg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACAGTACA-------------------------------tgtgt------gtgtgtg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1944577 432 - 2193130 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAACTGTTTTGGCACATGTGACATACCCCTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAAGAGCCATCTCGATTAGTCTTAATTTAGTA-----CTGACCCAGCTGCCCTCA--CCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---tgacaaaataaacccacttattcttctacc--atgacggcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccacggtgattgacttgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACAgtatg-------------------------------tgtgtgtgtgggtgtgtg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30017880 429 - 77216781 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACATGTGACACACCCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGTGATCTCGATTAGTCTTAATTTAGCA----TCTGACCCAGCTGCCCTCA--CCT----CCTTTGTACTT-Aaatagctcctttcatccagcaagttcaaagctgtc---taacaaaataaacccatttattcttgcaccatatgacagcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTACA-------------------------------TGTGT------GTGTGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27930478 427 - 80997621 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACATGTGACACACCCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGTGATCTCGATTAGTCTTAATTTAGCA----TCTGACCCAGCTGCCCTCA--CCT----CCTTTGTACTT-Aaatagctcctttcatctagcaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTACA-------------------------------TGTGT------GTGTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1986747 427 + 10377808 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACATGTGACACACCCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGTGATCTCGATTAGTCTTAATTTAGCA----TCTGACCCAGCTGCCCTCA--CCT----CCTTTGTACTT-Aaatagctcctttcatccagcaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTACA-------------------------------TGTGT------GTGTGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1874201 423 - 8458610 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACATGTGACACACCCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGCGATCTCGATTAGTCTTAATTTAGCG----TCTGACCCAGCTGCCCTCA--CCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcgtaggcaagcattgtccttcccattaaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTAC-----------------------------------GT------GTGTGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64829939 427 + 75148670 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTGGGCACATGTGACACACTCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGCGATCTCGATTAGACTTAATTTAGCA----TCTGACCCAGCTGCCCTCA--CCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTACT-------------------------------TGTGT------GTGTGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2053091 425 + 4244037 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACATGTGACACACCCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGCGATCTCGATTAGTCTTAATTTAGCA----TCTGACCCAGCTGCCCTCA--CCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcgtaggcaagcattgtccttcccattaaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgacctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTAC---------------------------------GTGT------GTGTGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2081243 425 + 4569836 T--------CCTC------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCGCACGTGACACACCCTTTGGGCACCTAC--------CCAAGAGAAGCTCTCAATAATGAACAGCGATCTCCATTAGTCTTAATTTAGCA----TCTGACCCAGCTGCCCTCA--CCT----cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcataggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcagtggttgagggattctgctggtgacataaagtgagtcagtggggccccagggtgattgatctgtgtttcttaagttcacatccagtg-ct----ctctcATTTCTAAC--------------------------------TAAAAGATTAG-----------------------------------CTTTGATAAGACAGTAC---------------------------------gtgt------gtgtgtg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46050459 429 - 159171411 T--------GCTT------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACAGGTGACACACCTCTTGGGCACCTAC--------CCAAGAGAAGGTCTCAACAGTAAAGAGCGGTCTCGATTAGTCTTAATTTAGCA----CCTAGCCCAGCCGCCCTCA--CCTCCA-CCTTTGTACTT-AAATAGCTCCTTTCATCCAACAAGTTCAAAGCTGTC---TAACAAAATAAACCCGCTTATTCTTGCACC--ACGACAGCGTAGGCAAGCATCGTCCTTCCCATTTAAGGGAGAGAG-AGAGGAGGTGAGTCATTCAATGGTTGAGAGAGTCTGCTGGTGACGTAAAGTGAGTCAATGGGG-CCCAGGGTGATTGACCTGTGTTTCTTAAGTTCACATCCAATG-CT----CTAGCATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACCATCtg-------------------------------tgtgt------gtgtgtg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1772890 429 + 3513951 T--------CCTT------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACAGGTGACACACCCCTTGGGCACCTAC--------CCAAGAGAAGGTCTCAACAGTAAAGAGCGATCTCGATTAGTCTTAATTTAGCA----CCTAGCCCAGCCGCCCTCA--CCTCCT-cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacctgcttattcttgcacc--atgatagcgtaggcaagcattgaccttcccatttaagggagagag-agggaaggtgagtcattcaatggttgaaggagtttgctggtgacataaagtgagtcagtgggg-cccagggtgactgacctgtgtttcttgagttcacatccaatg-ct----ctatcATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACCATACg-------------------------------tgtgt------gtgtgca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1821772 427 + 1920343 T--------TCTT------------TGTTCTTTTTCTCAGGTGGTAAAAATGTTTTGGCACAGGTGACACACCCCTTGGGCACCTAC--------CCAAGAGAAGGTCTCAACAGTAAAGAGCGATCTCGATTAGTCTTAATTTAGCA----CCTAGCCCAGCCGCCCTCA--CCTCCT-CCTTTGTACTT-AAATAGCTCCTTTCATCCAACAAGTTCAAAGCTGTC---TAACAAAATAAACCGGCTTATTCTTGCACC--ATGACAGCGTAGGCAAGCATTGTCCTTCCCATGTAAGGGAGAGAG-A--GAAGGTGAGTCATTCAATGGTTGAAGGAGTCTGCTGGTGACATAAAGTGAGTCAGTGGGG-CCCAGGGTGACTGACCTGTGTTTCTTAAGTTCACATCCAATG-CT----CTATCATTTCTAAT--------------------------------TAAAAGATTAG-----------------------------------CTTTGATGAGACCATACA-------------------------------tgtgt------gtgtgtg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6933657 407 - 7032639 T--------CCTT------------TGTTCTTTTTCTCAAGTGGTAAAAGTGTTTTGGCACAGGTGACACACCCATTGGGCACCTAC--------CCAAGAGAAGTTCTCAACAGTAAAGAGCAATCTTGATTAGTCTTAATTTAGCA----TCTAGCCCAGCCGCCCTCA--CCTCCG-cctttgtactt-aaatagctcctttcatccaacaagttcaaagctgtc---taacaaaataaacccacttattcttgcacc--atgacagcgtaggcaagcattgtccttcccatttaagggagagag-agagaaggtgagtcattcaatggttgagggagtctgctggtgacataaagtgagttagtggga-cccagg----------------------gttcacatccaATG-CT----CTGTCATTTCTAAT--------------------------------TAAAAGGTTAG-----------------------------------CTTTGATGAGACCATACg-------------------------------tgtgt------gtgtgca i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2942505 440 + 8555354 T--------CCTCTCTGCTG-----TGCCCTTTTTCCCAAGTGGTGGAGCTG-CTGGGCACAGGTGACACACCCCGTAGGCACCTAC--------CCAAGAGTAGGTCTCAATAAGAAAGAGTGATCTTGGTTAGTCTTAATTTAGCA----CCTGGCCCAGTCACCCTCA--CCTCCT-CCTTTGTACTT-AAATAGCTTCCTTCATCCAACAAGTTCAAAGCTGTC---TCACAAAATAAAGCCACTTATTCTTGCACC--ATGACAGCGTGGGCAAGCATTGTCCTTCCCCTTTCAGGGAGAGAG-AGAGAAGGTGAGTCATTCAATGCTTGAGGGTTCCTTCTGGGGACATGAAGTGAGTCAGTGGGGCCCCAGGATGGTTGACCTGTGTTTCTTAAGTTCACATCCAATGCCC-TGGCTGTCATTTATAAT--------------------------------GAAAAGATTAG-----------------------------------CTTTGATGAGACACtgta-------------------------------tgtat------gtgtgtg i proCoq1.NW_012135969v1 C 0 I 290 s otoGar3.GL873537 22740226 512 + 28711273 T--------CTTCTCTGGTGTTTTCTTTTCTTTTTCCTGAGTGGTGGAGGTG-TTGGGCCCAGGTGACACACCCCTTAGGCACCTAC--------CCAAGAGTAGGTCTCAATAAAAAAGAGTGATCTTGTTTAGTCTTAATTTAGCA----CCTGG-CCAGTCACCCTTA--CCTCCTCCCTTTGTACTT-AAATATCTTCTTTCATGCAACAAGTTCAAAGCTGTC---TAACAAAATAAACCCACTTATTCTTGCACC--ATGATGGCGTGGGCAAGCATTGTTCTTCCCATTTCAGGAAGAGAGAAGAGAAGGTGAGTCATTCAGTGGTTGAGAGATTCTTTTGGGGACATGAAATGAGTCAGAGGGGCCCCAGGGTGGTTGACCTGTGTTTCTTAAGTTCACATCCAATG-CC-TGACTGTAATTTGTAATTTGATGAGACATTGGTGTGTGTGTGTGTGTGAGAAGTGGTTTGGGCTCCTGGGAAAAAAATGCTGGGCAGAGGGGATTTTTTTATGTGCTATGCTC-------------------------------tgtgt------gtgtgtg i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22026379 467 - 122082543 TTCATGGTACCTC------------TGCTCTTTTCTCTAAACTGTGGAG----TGTGGCACAGGTAACCCATGCCCGAGGCTCTCAC--------CAACGGTAG--TCATAATAAGAAAGCACAATCTTGATTGGCCCTACTGGAGCAAGTACCTGGCCCAACCAGCCTCACTCCT----CCACTGTGCTT-AAATAGCTTCTTTTATCCAACAAGTTCAAAGCTGCC---TGACAAAATAAACCATCTTACTCTTGCACC--ACGACAGAGTAAGTGAGCATCAATCTTTCCATTTAAGGAAGAGGG-AGGGAGGGTGAGTCACACAGTGGTTGAGGGATTCTTTTGGTGGCACAGAGTGAGTCAGTGAGGCCTCAGGGGGATTGACCTGTGCTTCCAAGGTTCATATCCAATG-CC---ACTGTCACTTACAAT--------------------------------GAGACAATTAG-----------------------------------GTGTGAGGAGGTTGCATGCCAAGTGGTTTGGCTTCCTGGGAAGAAATGCTGGGT------CCAGGGG i mm10.chr11 C 0 I 12 s canFam3.chr9 21359150 418 + 61074082 t--------cCTC------------TGCTCTTTTCCCCCAGTTGTACAGGTGTTTGCATACAGGTGACATATCTCT---------------------GAGGGTAGGTCCCAATAAGAAAGAACAATCTTGTTAAGTCTTAATTTAGCA----CCTGGCACAAATACCTTTG--GCTCTT-CCTTTGTACTTAAAAAAGCTCCTTTCATCCAACAAGTTCAAAGCAGTCTAATAATAAAATAAAcccacttagtcttgcacc--atgacag--taggtaagcattgtttttcccttttaagg-agaaag-agagaaggtgagtcattgagtggttgagggattcttctggtgacatgaaatgagtcagtggggcctcagggtaattgacctgtgtttcttaagttcacatccagtg-ct----ctgtcATTTATAAT--------------------------------TAAAAGAGGAG-----------------------------------CTTTGATGAGACATtgtg-------------------------------tgtgt------gtgtgtg i canFam3.chr9 I 6 I 4 s dasNov3.JH570468 338674 448 - 852752 -TCGCTGTGCATC------------TGCTCTTTTTCCCAAGTGATAGAGGGGTTTGGACACAGGTGACAGATCCTTTAGGCACTTACCCTTGCATCCAAGAATAGGTCCCATTAAGAAAGAGCAATCTTGACTGGACTTAATCTACCA----ACAGGCCCAACAATCCTCA--CCTTCT-CCTTTGTACTT-AAATAGCTCCTTTCATCCAACAAGTTCAAAGCTGTC---CAACAAAATAAACCCATTTATTTTTGCACC--ATGGCAGTGTAGGCAAGCATTGTTTTTCCCATTTAAGGGAGAAGG-AGAGAAGGTGAGTCATTTAGTAGTTGAGGGATTCTTTTGGTAACATGAAATGAGTCAGTGGGGCCCCAGGGTGATTGACCTGAATTACTTAAGTTCACCTCCAATG-CCCTGACTGTCATTTATAAT---------------------------------AAAAAATTAG-----------------------------------CTTTGATGAGACATTGTG-------------------------------TGTGT------GTGTTTG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35856450 2477 - 65901067 I a score=962850.000000 s hg38.chr17_GL383564v2_alt 28954 115 + 133151 CACGCACAT------------CTGTGTGTTTGTC-----------------------------------------------------------------------------GTGTGTGAAGAGTTTCCCTGGAAACCACAGAGGtcatcatt------accatca---ccatcaccaga------atcatcatcatcatcatcat--caaatcatatagc----t s panTro5.chr17 16222828 112 + 83181570 CACGCGCAT------------CTGTGTGTTTGTC-----------------------------------------------------------------------------ATGTGTGAAGAGTTTCCCTGGAAACCACACAGGtcatcatt------accatca---ccatcaccaga------atcatcatcatcatcatca-----aatcatatagc----t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130180 112 + 83442489 CACGCGCAT------------CTGTGTGTTTGTC-----------------------------------------------------------------------------ATGTGTGAAGAGTTTCCCTGGAAACCACACAGGtcatcatt------accatca---ccatcaccaga------atcatcatcatcatcatca-----aatcatatagc----t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965298 112 + 4267968 cacgcgcat------------ctgtgtgtttgtc-----------------------------------------------------------------------------gtgtgtgAAGAGTTTCCCTGGAAACCACAGAGGtcatcatt------accatca---ccatcaccaga------atcatcatcatcatcatca-----aatcatatagc----t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945009 120 - 2193130 cacgcacgt------------ctgtgtgtttct------------------------------------------------------------------------------gtgtgtgAAGAGTTGCCCTGGAAACCACACAGGtcatcattaccatcaccatca---ccatcaccaga------atcatcatcatcatcatcat--cagatcatatagc----t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018309 112 - 77216781 CACACGCGT------------CTGTGTGTTTGTT-----------------------------------------------------------------------------GTATGTGAAGAGTTTCCCTGGAAACCACACAGGtcctcatt------accatca---ccatcaccaga------atcatcatcatcatcataa-----agtcatatagc----t i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27930905 112 - 80997621 CACACGCGT------------CTGTGTGTTTGTT-----------------------------------------------------------------------------GTATGTGAAGAGTTTCCCTGGAAACCACACAGGtcctcatt------accatca---ccatcaccaga------atcatcatcatcatcataa-----agtcatatagc----t i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987174 112 + 10377808 CACACGCAT------------CTGTGTGTTTGTT-----------------------------------------------------------------------------GTATGTGAAGAGTTTCCCTGGAAACCACACAGGtcctcatt------accatca---ccatcaccaga------atcatcatcatcatcataa-----agtcatatagc----t i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1874624 118 - 8458610 CACACGCGT------------CTGTGTGTTTGTT-----------------------------------------------------------------------------GTATGTGAAGAGTTTCCCTGGAAACCACACAGGTCCTCATT------ACCATTA---CCATCACCAGAatcatcatcatcatcatcatcataa-----agtcatatagc----t i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830366 103 + 75148670 CACACGCGT------------CTGTGTGTTTGTT-----------------------------------------------------------------------------GTAAGTGAAGAGTTTCCCTGGAAACCACACAGGTCCTCATT------GCCATCA---CCATCACCAGAatcatcatcatcatcatcatca------------------------ i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2053516 118 + 4244037 CACACGCAT------------CTGTGTGTTTGTT-----------------------------------------------------------------------------GTATGTGAAGAGTTTCCCTGGAAACCACACAGGTCCTCATT------ACCATTA---CCATCACCAGAatcatcatcatcatcatcatcataa-----agtcatatagc----t i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2081668 118 + 4569836 cacacgtgt------------ctgtgtgtttgtt-----------------------------------------------------------------------------gtatgtgAAGAGTTTCCCTGGAAATCACACAGGTCCTCATT------ACCATCA---CCATCACCAGAatcatcatcatcatcatcatcatca-----AGTCATATAGC----T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46050888 139 - 159171411 tgtgtgtgtgcatgtgcatgcgtatgtgtttgat-----------------------------------------------------------------------------gtgtgtgAAGAGTTTCCCTGGAAACCACACAGCtcattatt------accatta---ccatcaccagaatcatcatcatcatcatcatcatcatcacatatcatATAGCTTCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773319 127 + 3513951 tgtgtgtgt------------gtgtgtgtttgtt-----------------------------------------------------------------------------gtgtgtgAAGAGTTTCCCTGGAAACTACACAGCtcattatt------accatta---ccatcaccagaatcatcatcatcatcatcatcatcatcacatatcatatagcttcat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822199 128 + 1920343 tgcatgtgc--------gtgtgtgtgcgtttgtt-----------------------------------------------------------------------------gtgtgtgAAGAGTTTCCCTGGAAACCGCACAGCTCATTATT------ACCATTA---CCATCACCAGA---atcatcatcatcatcatcatcatcacatatcatACAGCTTCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934064 123 - 7032639 cgtgcgtgc----------gtgtgtgtgtttgtt-----------------------------------------------------------------------------gtgtgtgAAGAGTTTCCCTGGAAACCACACAGCtcattatt------accctta---ccatcaccaga------atcatcgtcattatcatcatcacatatcatatagcttcct i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22740738 125 + 28711273 --tgtgtgt------------gtgtgtgtgtgtgCATGCAAG----------------------------------------------------------CATGCTT--GAGAGAGTGAAGAGCTTTCCTGGAAACCAAACAGCccatcatt------accaccatgcccaccaccaga------actgttatcatcaccatca--------cgtatct------ i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22026858 100 - 122082543 GAGTAgtgt------------gtgtgtgtgtgt------------------------------------------------------------------------------gtgtgtgtgtAGATTCCCTGGAAACACAACATCTTCTCATT------------A---CCAGCACTGGA------ATCCTGATCATGATGATGA------ATTATTC-------- i mm10.chr11 I 12 C 0 s canFam3.chr9 21359572 170 + 61074082 tatgtgtgt------------gtgtgtgtgtgtgtgtgtgtgagtggtgtatgAAGTGGT--TTGGGTTCCTGAGAGTAAATGCTGGGTGGAAGGATCACTATGTTTGGGGAGGTGTGAAGAGCTTCCCTGGAGACCAAACAATCcatcatc------accatca---ttggtg-----------atgattatcaccatcatta--------------------- i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 339122 136 - 852752 --------T------------GTGTGAAATGGTTTGGGGTTCTGAGAAGAAAGGCGGGGCAGAGGGGATCATTATGGTTGGAG----------------------------AAATGTGAAGAGCTTCCCTGGAAACCAAAca-----tcatc------accatca---ctcccaccacc------accaccgtcatcgtcgtcC--------------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2942945 290 + 8555354 I e micMur3.chr16 35856450 2477 - 65901067 I a score=1090331.000000 s hg38.chr17_GL383564v2_alt 29069 93 + 133151 tcaccatcatcatcattgtcatAGaaccatatatc---catcaagctcttactatgagccaggcgctggtctaaattatagctacagtcatatggg s panTro5.chr17 16222940 93 + 83181570 tcaccatcatcatcattgtcatAGaaccatatatc---catcaagctcttactatgagccaggcgctggtctaaattatagctacagtcatatggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130292 93 + 83442489 tcaccatcatcatcattgtcatAGaaccatatatc---tatcaagctcttactatgagccaggcgctggtctaaattatagctacagtcatatggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965410 96 + 4267968 tcaccatcatcatcattgtcatAGAACCATATATCCAtcatcaagctcttactatgagccaggcgctggtctaaattatagctacagtcatatggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945129 93 - 2193130 tcatcatcatcatcattgtcatagaatcatatatc---catcaagctcttactatgagccaggcgctggtctaaattatagctacagtcatatggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018421 93 - 77216781 tcatcatcatcatcatcgtcatAGAAGCATatatc---catcaaactcttactatgagccaggcgctggtttacatcatagctacaatcatatggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27931017 93 - 80997621 tcatcatcatcatcatcgtcatAGAAGCATatatc---catcaaactcttactatgagccaggcgctggtttacatcatagctacaatcatatggg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987286 93 + 10377808 tcatcatcatcatcatcgtcatAGAAGCATatatc---catcaaactcttactatgagccaggcgctggtttacatcatagctacaatcatatggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1874742 93 - 8458610 tcatcatcatcatcatcgtcatAGAAGCATatatc---catcaaactcttactatgagccaggcgctggtttacattatagctacaatcatatggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830469 75 + 75148670 ------------------tcatAGAAGCATatatc---catcaaactcttactatgagccaggcgctggtttacattatagctacaatcatatggg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2053634 93 + 4244037 tcatcatcatcatcatcgtcatAGAAGCATatatc---catcaaactcttactatgagccaggcgctggtttacattatagctacaatcatatggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2081786 92 + 4569836 TCATCATCATTATCATTGTCATAGAAGCATatatc---catcaaactcttactatgagccaggcgttggtttacattata-ctacaatcatatggg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46051027 93 - 159171411 TCATCATCATTAGTATTGTCATAGAAGCATatatt---catccagctcttactatgaaccaggagctggtctaatttatagatacagttgtatgtg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773446 93 + 3513951 tcatcatcatcattattgtcatAGAAGCATATGTC---Catcaagctcttactatgaaccaggtgctggtctaatttatagatacagtcgtatgtg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822327 87 + 1920343 TCATCAT------TATCGTCATAGAAGCATatatc---catcaagctcttactatgaaccaggagttggtctaatttatagatacagtcgtatgtg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934187 93 - 7032639 tcatcatcatcattattgtcatAGAAGCATatatc---catcaagctcttactatgaaccaggagctggtctaatttatagatacagtcgtatgtg i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35858927 93 - 65901067 tcatcatcatcatcattgtcatAGAAGTGCacacc---cattgagctcttgctatgagccaggcactgatctaaattatagatacatttatatgta i micMur3.chr16 I 2477 C 0 s otoGar3.GL873537 22740863 89 + 28711273 ttttcattgccatcactgtcgt--caGTGTacatc---taccgagctcttactattaaccaggtactgatctgaattatagatatgtttctata-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22026958 90 - 122082543 TTTTCCTCCTCCTCCACGTCAGCAGA---CAGatg---tattgaaaacttattacaaattaaacactgatctaaattgtagataagtctatataca i mm10.chr11 C 0 C 0 s canFam3.chr9 21359742 87 + 61074082 ------tcatcatcaccaccatTGAAGCTCacatt---catcgagcttttaccacgaatcaggcactcatctaagttatagataaattaatgtata i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 339258 68 - 852752 TCaccatca--------gtcattgacgtttacatt---c------------ctatgagccaagcactgatctaagctatagtt---tttacaca-- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2942945 290 + 8555354 I a score=4448657.000000 s hg38.chr17_GL383564v2_alt 29162 268 + 133151 taaactcatttaatcattacaacaatcctagaaagccaatgctatggtt--ttctcattttgcagacaagtagccaagactcagagaggctaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccagcaactgtgctcttaactactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAAAAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTGAAG s panTro5.chr17 16223033 268 + 83181570 taaactcatttaatcattacaacaatcctagaaagccaatgctattgtt--ttctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccagcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTGAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130385 268 + 83442489 taaactcatttaatcattacaacaatcctagaaagccaatgctattgtt--ttctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccagcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTGAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965506 268 + 4267968 taaactcatttaatcattataacaatcctagaaagccaatgctattgtt--ttctcattttgcagacaaggagccaagactcagagaggctaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccagcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTGAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945222 268 - 2193130 taaactcatttaatcattacaacaatcctagaaagccaatgctattgtt--tcctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagattca-agcagcctgcctccagcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTGAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018514 268 - 77216781 taaactcatttaatcattacagcaatcctagaaagccaatgctattgtt--tcctcattttgcaaacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccggcaactgtgctcttaaccactgtgctttacAGAGGCCTAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATAACCCAATTGTTTTGATTCC-TTTCCTTGAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27931110 268 - 80997621 taaactcatttaatcattacagcaatcctagaaagccaatgctattgtt--tcctcattttgcaaacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccggcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATAACCCAATTGTTTTGATTCC-TTTCCTTGAAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987379 268 + 10377808 taaactcatttcatcattacagcaatcctagaaagccaatgctattgtt--tcctcattttgcaaacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccggcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATAACCCAATTGTTTTGATTCC-TTTCCTTGAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1874835 259 - 8458610 taaactcatttaatcattacagcaatcctagaaagccaatgctattgtt--tcctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccag---------cca-agcagcctgcctccggcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATGGAATCATAATAACCCAATTGTTTTGATTCC-TTTCCTTGAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830544 268 + 75148670 taaactcatttaatcattacagcaatcctagaaagccaatgctattgtt--tcctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-accagcctgcctccggcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATAACCCAATTGTTTTGATTCC-TTTCCTTGAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2053727 268 + 4244037 taaactcatttaatcattacagcaatcctagaaagccaacgctattgtt--tcctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtaaagccaggattcagatcca-agcagcctgcctccggcaactgtgctcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATAACCCAATTGTTTTGATTCC-TTTCCTTGAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2081878 266 + 4569836 taaactcatttaatcattacagcaatcctagaaagccaatgctattgtt--tcctcattttgcagacaaggagccaagactcagagaggttaagtaacatgcccaaggtcacacagctattaggtggtgaagccaggattcagatcca-agcagcctgcctccggcaactgtgctcttaaccac--tgctttacAGAGGCCAAGTCTCAGATTTTG---TCAACAGGATG-ATAGAATCATAATAACCCCATTGTTTTGATTCC-TTTCCTTGAAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46051120 267 - 159171411 taaactcatttaatcattacagcaatcctagaaagccaacgctattatt--tcttcattttgcagacaaggaaccaagattcagggaggttaagtaacatgtccgaggtcacacagctattaggtggtgaaggcaggattcagattca-agcagcctgccttcaacaactatgctcttaaccactgtgctttaTAGAGGCCAAGTGT-AGGTTTTG---TCAACAGGGTG-ACAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTAAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773539 267 + 3513951 taaactcatttaatcattacaacaatcctagaaagccaatgctattgtt--tcttcattttgcagacaaggaaccaagattcagggaggttaagtaacatgtccaaggtcacacagctattaggtggtgaaggcaggattcagattca-agcagcctgccttcagcaactgtgctcttaaccaccctgttttaTAGAGGCCAAGTGT-AGGTTTTG---TCAACAGGATG-AGAGAATCATAATGACCCCATTGTTTCGATTCC-TTTCCTTAAAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822414 267 + 1920343 taaactcatttaatcattacagcaatcctagaaagccaatgctattgtt--tcttcattttgcagacaaggaaccaagattcagggaggttacgtaacatgtccaaggtcacaaagctgttaggtggtgaaggaaggattcagattca-agcagcctgccttcagcaactgtgctcttaaccactgtgctttaTAGAGGCCAAGTGT-TGGTTTTG---TCAACAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTAAAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934280 269 - 7032639 taaactcatttaatcattacagcaatcctagaaagccagtgctattgtttctcttcattttgcagacaatgaaccaagattcagggatgttaagtaacatatccaaggtcacacagctattaggtggtgaaggcaggattcagattca-agcagcctgccttcagcaaccgtgctcttaaccactgtgctttaTAGAGGCCAAGTGT-AGGTTTTG---TCAACAGGATG-ATAGAATCATAATGACCCCATTGTTTTGATTCC-TTTCCTTAAAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35859020 271 - 65901067 taaactcatttaatcctcacagtaatcccagaaagtcaatgctattgtt--tccctattttgcagaagaggagccaaggctcagagaggttaagtaacacacacaaggtcacacagagactaggtggtgaagccaggatgtagaccct-ggcagtctgcctctggcaactctgctcttaaccactgtgctttacAGAGGCCAAGCCTCAGATTTTGTCATCAGCAGGATG-GCAGAGTCATAATGACTCCATTGTTTTGATTCC-TTTCCTTGAAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2943235 271 + 8555354 taaactcgtttaatccttacagcaatcccagaaagtcaatgctattgtt--tccccattttgcagatgaggagccaaggctcagagaggttaagtaacaccctcaaggtcgcacagctactcggtggtgaagccaggatttagatcct-ggcagtctgcctccagcaactctgttcttaaccactgtgctttacAGAGGCCAAGTCTCAGATTTTGTCATCAGCAGGATG-ACAGAGTCATAATGACTCCATTGTTTTGATTCC-TTTCCTTGAAG i proCoq1.NW_012135969v1 I 290 C 0 s otoGar3.GL873537 22740952 265 + 28711273 ------cactgaatccttacagcaaccctggaaagtcagtgctattgtt--tctgcatttcgcagatgaagagccaagtctcagagaggttaagtaacccactcaaggtcactcagctgctgggtggtgaagtcaagattcggatcct-ggcagtctgcgttcagcagctccgctcttcaccaccatgctTCACAGAGGCCAGGTCTCAGATTTTGCCATCACCAGGATG-ACAGAATCACAATGACTCAATTGTTTTAATTCC-TTTCCTTGAAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22027048 261 - 122082543 taagcccacttaatccttacagtagtctcacaaagtcaatatcgccatt--ttc-cactttgaagataaggctccaaggccccaagagagtaactaacacattaaagatcacatggttgttgaatgaagaatacaagattcagacccagatcagtctgcctctaaaacctgcgctc-taaccactgtgttTT-CCGAAGCCAGGTCTCAGACTTCA---TCAGTGGGATGAACAGAACCATGA-----CTATTGTTTTG-TTCT-TTTCCTTAGAG i mm10.chr11 C 0 I 1033 s canFam3.chr9 21359829 231 + 61074082 taaactcatataa--------------------------------------tccccattttggag-tgagaaaccacggctcagagaggttatgtaacatgcccagggtcgcacagctagtaggtggtgaaaccaggattcagatcta-ggtggtctacctctagcaactatgctcctaaccaccctgctTCACAGAGGCCAGGTCTCCAA-TGTG---TCAGCAGGATG-ACAGAACCATAATCACCCCATTGTTTTGATTCCTTTTTCTTGAAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 339326 250 - 852752 tcaactcatttaatccttatagcaatcctgtgacgtcaatgctattgtta-tccccattttgca-atgaggaactaaagcacagagaggttaagtaacacgcccaaggtttcatagct----ggtagtgaagccaggattcaaatcta----------------gcaactgtgctcctaacctctgtgctgtacAGAGGCCAAGTCTCAGATTTTG---TCAGCAGGAAG-ACAGAACGATAATTGCCCCATTGTTTTGATTCCTTTTCCTTGAAG i dasNov3.JH570468 C 0 C 0 a score=821529.000000 s hg38.chr17_GL383564v2_alt 29430 60 + 133151 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATGCCACAAAGGG---------TGGT s panTro5.chr17 16223301 60 + 83181570 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATGCCACAAAGGG---------TGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130653 60 + 83442489 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATGCCACAAAGGG---------TGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965774 60 + 4267968 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATGCCACAAAGGG---------TGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945490 60 - 2193130 GAAATG--AGTATGTTTACGTTAGAAGAAACGTTTCTGAGAATTTATGCCACAAACGG---------TGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018782 60 - 77216781 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATACAACCAAGGG---------TGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27931378 60 - 80997621 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATACAACCAAGGG---------TGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987647 60 + 10377808 GAAATG--AGTATGTTTATGTTAGAAGAAACATTTCTGAGAATTTATACAACCAAGGG---------TGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1875094 60 - 8458610 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATACAACCAAGGG---------TGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830812 60 + 75148670 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATACAACCAAGGG---------TGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2053995 60 + 4244037 GAAATG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATACCACCAAGGG---------TGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2082144 60 + 4569836 GAAAAG--AGTATGTTTATGTTAGAAGAAACGTTTCTGAGAATTTATACCACCAAGGG---------TGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46051387 69 - 159171411 GAAATG--AGAATGTTTATGATAGAAGAAATGTTTCTGAGAGTGTATACCACAGAGGAATGAAATTTATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773806 69 + 3513951 GAAATG--AGAATGTTTACGATAGAAGAAACGTTTCTGAGAATGCATGCCACAGAGGAATGAAATTTATGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822681 69 + 1920343 GAAATG--AGAATGTTTACGATAGAAGAAACGTTTCTGAGAATGTATGCCACAGAGGAACGAAATTTATGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934549 69 - 7032639 GAAATA--AGAATGTTTACGATACAAGAAACGTTTCTGAGAATGTATGCCACAGAGGAATGAAATTTATGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35859291 60 - 65901067 GAAATG--AGAATGTTTATGTTAGAGGAACCATTTCTGAGAATTTATGCCACAAAGAG---------TGGT i micMur3.chr16 C 0 I 1323 s proCoq1.NW_012135969v1 2943506 60 + 8555354 GAAATG--AGAATGTTTATGTTAGAGGAACCGTTTCTGAGAATTTAGGCCACAAAGAG---------TGGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22741217 60 + 28711273 GAAATG--AGAATGTTGATGGTAGAGGAATGGTTTCTGAGTATTTAGGCCACAAAGTG---------GGGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21360060 62 + 61074082 GAAACGATAGAGTGTTTATGCTAGTGGAATCACTGCTGAGAATTTCTGCCCCAAAGGG---------CAGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 339576 60 - 852752 GGATTG--AGAGTGTTGAAGCTAGAGGAACCATTTTTGGGAATTTATTCCAAAAAGGG---------TGAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I a score=186115.000000 s hg38.chr17_GL383564v2_alt 29490 15 + 133151 ACAAGGAAT-AAAAGT s panTro5.chr17 16223361 15 + 83181570 ACAAGGAAT-AAAAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130713 15 + 83442489 ACAAGGAAT-AAAAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965834 16 + 4267968 ACAAGGAATAAAAAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945550 15 - 2193130 ACAAGGAAT-AAAAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018842 15 - 77216781 ACAAGGAAT-GAAAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27931438 15 - 80997621 ACAAGGAAT-GAAAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987707 15 + 10377808 ACAAGGAAT-GAAAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1875154 15 - 8458610 ACAAGGAAT-GAAAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830872 15 + 75148670 ACAAGGAAT-GAAAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2054055 15 + 4244037 ACAAGGAAT-GAAAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2082204 15 + 4569836 ACAAGGAAT-GAAAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46051456 15 - 159171411 ACAAGGAAC-GAACGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773875 15 + 3513951 AGAAGGAAT-GAACGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822750 15 + 1920343 ACAAGGAAG-GAATGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934618 15 - 7032639 ACAGGGAAT-GAACGT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2943566 15 + 8555354 GCCAGGCAT-GAAAGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22741277 15 + 28711273 GCACGAAAC-GAAAGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21360122 15 + 61074082 GCAAGAAAT-CAAGGT i canFam3.chr9 C 0 I 157 s dasNov3.JH570468 339636 15 - 852752 GCTAGGGAT-GAAAGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e micMur3.chr16 35859351 1323 - 65901067 I a score=571614.000000 s hg38.chr17_GL383564v2_alt 29505 51 + 133151 CCTTTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGCAATTTTAAT s panTro5.chr17 16223376 51 + 83181570 TCTTTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGCAATTTTAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130728 51 + 83442489 TCTTTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGCAATTTTAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965850 51 + 4267968 TCTTTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGCAATTTTAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945565 51 - 2193130 TCTTTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGCAATTTTAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018857 49 - 77216781 CCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27931453 49 - 80997621 CCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987722 49 + 10377808 CCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1875169 49 - 8458610 TCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830887 49 + 75148670 TCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2054070 49 + 4244037 TCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2082219 49 + 4569836 TCTTTAGTA----TCACAGGA----------------------------TCTTGA-------------------------AGCTTGAGGACTCTGGTAATTTTAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46051471 51 - 159171411 TCTGTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAAGACCCTGGCAGTTTTAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773890 51 + 3513951 TCTGTAGTA--TCTCACAGGA----------------------------TATTGA-------------------------AGCTCGAAGACTTTGGCAGTTTTAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822765 51 + 1920343 TCTATAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAAGACCCTGGCAGCTTTAAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934633 51 - 7032639 TCTGTAGTA--TCTCACAGGA----------------------------TCTTGA-------------------------AGCTTGAAGACTCTGGCAGTTTTAAT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2943581 51 + 8555354 TCTGTGGTA--TCTCACGGTA----------------------------ACTTGA-------------------------AGTCTGAGGCCCCTGGCAATGTTAAT i proCoq1.NW_012135969v1 C 0 I 602 s otoGar3.GL873537 22741292 50 + 28711273 TCTGTAGTA--CCACACGGTA----------------------------ACTTGA-------------------------AG-CTCGGGCACTCTGCAGTTTCAAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21360294 106 + 61074082 cccctagtttgtttcccagagttaggagtctttcatgttctgtctccctttttgatatttcccactcattttttcAAAATAGCCTGAGAACCTTGGCAATTTTAAT i canFam3.chr9 I 157 C 0 s dasNov3.JH570468 339651 52 - 852752 TCTGCAGTA--TCTCAAAGAA---------------------------AGTTTGG-------------------------AGCTTGAGGATCCAAGCAATTCGAAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e micMur3.chr16 35859351 1323 - 65901067 I a score=6222421.000000 s hg38.chr17_GL383564v2_alt 29556 578 + 133151 AAACTAGGAGTTGACAAAGAAGCTCAACTCACTTCCTGCCATTT-TAAAACCACCTTGTCTATTG---AGAAAGAGGAGGAGGGAAA----CA----Gaatc-cctatagatgttcattgtttcaccatttacaa-aacacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccttgagag---agg-ggaacagacatcacaatc-cccatcgtgcagtgggagaagtacaggtgt--agggaggtgaaatgc-cccctctgc-acctcacagcaggtgaggggcagctccacgcactcaacccc-aagtcttctcatttctttttccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACGTTCAGA-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGTATCCTAGGGTCTGGGATCTCCCTAGGGGTGACCTTCTCGGT--------------------GCTGTCCCCAA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGAGGCTCCCCCGTTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT s panTro5.chr17 16223427 578 + 83181570 AAACTAGGAGTTGCCAAAGAAGCTCAACTCACTTCCTGCCATTG-TAAAACCACCTTGTCTATTG---AGAAAGAGGAGGAGGGAAA----CA----GAATC-CCTATAGATGTTCATTGTTTCACCATTTACAA-AATACTTGTTAAAGTACTTTGTGTTGTATCCAAATGGAGGccccaaacaaccttgagag---agg-ggaacagacatcacaatc-cccatcgtgcagtgggagaagtacaggtgt--agggaggtgaaatgc-cccctctgc-acctcacagcaggtgaggggcagctccatgcactcaacccc-aagtcttctcatttctttttccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACGTTCAGA-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGTATCCTAGGGTCTGGGATCTTCCTAGGGGTGACCTTCTCGGT--------------------GCTGTCCCCCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGAGGCTCCCCCGTTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16130779 578 + 83442489 AAACTAGGAGTTGCCAAAGAAGCTCAACTCACTTCCTGCCATTG-TAAAACCACCTTGTCTATTG---AGAAAGAGGAGGAGGGAAA----CA----Gaatc-cctatagatgttcattgtttcaccatttacaa-aatacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccttgagag---agg-ggaacagacatcacaatc-cccatcgtgcagtgggagaagtacaggtgt--agggaggtgaaatgc-cccctctgc-acctcacagcaggtgaggggcagctccatgcactcaacccc-aagtcttctcatttctttttccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACGTTCAGA-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGTATCCTAGGGTCTGGGATCTTCCTAGGGGTGACCTTCTCGGT--------------------GCTGTCCCCCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGAGGCTCCCCCGTTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3965901 577 + 4267968 AAACTAGGAGTTGCCAAAGAAGCTCAACTCACTTCCTGCCATTG-TAAAACCACCTTGTCTATTG---AGAAAGAGGAGGAGGGAAA----CA----GAATC-CCTATAGATGTTCATTGTTTCACcatttacaa-agtacttgttaaagcacttcgtgttgtatccaaatggaggccccaaacaaccttgagag---agg-ggaacagacatcacaatc-cccatcgtgcagagggagaagtacaggtgt--agggaggtgaaatgc-cccctctgc-acctcacagcaggtga-gggcagctccacgcactcaacccc-aagtcttctcttttctttttccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACATTCAGA-CCACTCTGAAATCCT---------------GG-----AAGGATT-TTACGGG--AAAGGTATCCTAGGGTCTGGGATCTCCCTAGGGGTGACCTTCTCGGT--------------------GCTGTCCCCCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGAGGCTCCCCCGTTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1945616 577 - 2193130 AAACTGGGAGTTGCCAAGGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTATTG---AGAAAGAGGAGGAGGGAAA----CA----Gaatc-cctatagatgttcattgtttcaccacttacaa-agtacttgttaaggtactttgtgttgtatccaaatggaggccccaaacaaccttgagag----gg-ggaacagacgtcacaatc-cccatcgtgcagagggagaagtacaggtgc--agggaggtgaaatga-cccctccgc-acttcacagcaggtgaggggcagttccacgcactcaacccc-aagtcttctcatttctgtttccc-----------------------------------------------------------------------------------------------tgctctttccCTCTTCCCAACTG-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACGTTCAGA-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGAACTCCCTAGGGGTGACCTTCTCGGT--------------------GCTGTCCCCCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGACCATCACCT----------------GGAGGCTCCCCCATTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30018906 575 - 77216781 AAACTGAGAGTTGCCAAAGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGAAAA----TA----GAAT---CTATAGATGCTCATTGTttcaccatttacaa-agcacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccctgagag---agg-ggaacaggcatcacaatc-ccccttgtgcagagggagaagtacagttgt--agggaggtgaaatga-cccctctgc-acctcacggcaggtgaggggcagctccatgcacccaacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACATTCACG-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCGCTAGGGGTGATCTTCTCAGT--------------------GCTGTCCCCCA--------------------------T----------------------------TAGCATTTTAGACTCAGCTTCTGACCTTTCGCCATCGCCT----------------GGAAGCTCCCCTGTTTGATGCTGGTTATTGCATCCAA---------ATGTCCCTT-----TCCCTT-CTTCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27931502 575 - 80997621 AAACTGAGAGTTGCCAAAGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGAAAA----TA----GAAT---CTATAGATGTTCATTGTttcaccatttacaa-agcagttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccctgagag---agg-ggaacaggcatcacaatc-ccccttgtgcagagggagaagtacagttgt--agggaggtgaaatga-cccctctgc-acctcacggcaggtgaggggcagctccatgcacccaacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACATTCACG-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCGCTAGGGGTGATCTTCTCAGT--------------------GCTGTCCCCCA--------------------------T----------------------------TAGCATTTTAGACTCAGCTTCTGACCTTTCGCCATCGCCT----------------GGAAGCTCCCCTGTTTGATGCTGGTTATTGCATCCAA---------ATGTCCCTT-----TCCCTT-CTTCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1987771 575 + 10377808 AAACTGAGAGTTGCCAAAGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGAAAA----TA----GAAT---CTATAGATGTTCATTGTttcaccatttacaa-agcacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccctgagag---agg-ggaacaggcatcacaatc-ccccttgtgcagagggagaagtacagttgt--agggaggtgaaatga-cccctctgc-acctcacggcaggtgaggggcagctccatgcacccaacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACATTCACG-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCGCTAGGGGTGATCTTCTCAGT--------------------GCTGTCCCCCA--------------------------T----------------------------TAACATTTTAGACTCAGCTTCTGACCTTTCGCCATCGCCT----------------GGAAGCTCCCCTGTTTGATGCTGGTTATTGCATCCAA---------ATGTCCCTT-----TCCCTT-CTTCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1875218 575 - 8458610 AAACTGAGAGTTGCCAAAGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGAAAA----TA----GAAT---CTATAGATGTTCATTGTttcaccatttacaa-agtacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccctgagag---agg-ggaacaggcatcacaatc-cccattgtgcagagggagaagtacaggtgt--agggaggtgaaatga-cccctccgc-acctcacggcaggtgaggggcagctccatgcacccaacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATACAACTTCACATTCACA-CCACTCTGAAATTCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCGCTAAGGGTGATCTTCTCAGT--------------------GCTGTCCTCCA--------------------------T----------------------------TAGCATTTTAGACTCAGCTTCTGACCTTTCGCCATCGCCT----------------GGAGGCTCCCCTGTTTGATGCTGGTTATTGCATCCAA---------ATGTCCCTT-----TCCCTT-CTTCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64830936 574 + 75148670 AAACTGAGAGTTGCCAAAGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGAAAA----TA----GAAT---CTATAGATGTTCATTGTttcaccatttacaa-agtacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccctgagag---agg-ggaacaggcatcacaatc-cccattgtgcagagggagaagtacaggtgt--agggaggtgaaatga-cccctccgc-acctcacggcaggtgaggggcagctccatgcacccaacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACATTCACA-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTATGGG--AAAGGCATCCTAGGGTCTGGGATCTCGCCAGGGGTGATCTTCTCAGT--------------------GCTGT-CCCCA--------------------------T----------------------------TAGCATTTTAGACTCAGCTTCTGACCTTTCGCCATCGCCT----------------GGAGGCTCCCCCGTTTGATGCTGGTTATTGCATCCAA---------ATGTCCCTT-----TCCCTT-CTTCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2054119 575 + 4244037 AAACTGAGAGTTGCCAAAGAAGCTCAACTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGAAAA----TA----GAAT---CTATAGATGTTCATTGTttcaccatttacaa-agtacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccctgagag---agg-ggaacaggcatcacaatc-cccattgtgcagagggagaagtacaggtgt--agggaggtgaaatga-cccctccgc-acctcacggcaggtgaggggcagctccatgcacccaacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTATATGTGGATAAAACTTCACATTCACA-CCACTCTGAAATCCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCGCTAAGGGTGATCTTCTCAGT--------------------GCTGTCCCCCA--------------------------T----------------------------TAGCATTTTAGACTCAGCTTCTGACCTTTCGCCATCGCCT----------------GGAGGCTCCCCCGTCTGATGCTGGTTATTGCATCCAA---------ATGTCCCTT-----TCCCTT-CTTCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2082268 576 + 4569836 AAACTGAGAGTTGCCAAAGAAGCTCAGCTCACCTCCTGCCATTG-TAAAACCACCTTGTCTACTG---AGAAAGAGGAGGAGGGAAA----TG----GAAT---CTATAGATGTTCATTGTttcaccatttacaa-agtacttgttaaagtactttgtgttgtatccaaatggaggccccaaacaaccttgagag---agg-ggaacaggcatcacaatc-cccatcatgcagagggagaggtacaggtgt--agggaggtgaaatga-cccctccac-acctcacggcaggtgaggggcagctccatgcatcccacccc-aagtcttctcatttctgttcccc-----------------------------------------------------------------------------------------------tgctctttccctgttcccaactg-TGAGG-GCCTTGCTGGAGGTACATGTGGATAAAACTTCACATTCAGA-CCACTCTGAAACCCT---------------GG-----ATGGATT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCCCTAGGGGCGATCTTCTCAGT--------------------GCTGTCCCCCG--------------------------T----------------------------TAACATTTTAGACTCAGCTTCTGACCTTTCACCATCGCCT----------------GGAGGCTCCGCCGTTTGATGCTGGTTATTGCATCCAA---------ATGTTCCTT-----TCCCTTCCTTCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46051522 665 - 159171411 AAACTGGGAGTTGCCAAAGAAGCTCAGTTCACCTCCTGCCATTG-TAAAATCACCTTGTCTATTG---AGAAAGAGAAGAAGAGAAC----TA----GAATC-CCTATAGATATTca---tttcaccatttacaa-agtacttgttaaaatactttgcgttgtatccagttggaggccccaaacaaccttgagag---agg-tgagcaggcatcacaatc-cctactgcgcagagggagaagtacaggtgt--ag--aagtgaaatga-cccctccgc-ac---acagcagttct-tggcagctcctcgccctcaagcccaaagtcttctcattcctgttccctgctcttttccctgttcccaactgNNNNNNNNNNTCGAGCTCGGTACCCGGGGATCCCACTCGCCCTCAAGCCCAAGTCTTCTCATTCCTGTTCCCTGCTCTTTCCCTGTTCCCAACTG-CGAGG-GCCTTGCTGAAGGAAGATGTGGGTAAAACCTCACATTCGGG-CCACTCTCAAACGCT--------------GGG-----ATGGTTT-TTACAGG--ACGGGCATCCTAGGGTCTGGGATCTCCCTAGGGGTGACCCTCCCAGT--------------------GCTGTCTTTCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCCGGCCTTTGGCCATTGCCT----------------GGAGGCTCCCT-GCTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1773941 598 + 3513951 AAACTGGGAGTTGCCAAAGAAGCTCAGCTCACCTCCTGCCATTG-TAAAATCACCTTGTCTATTG---AGAAAGAGAAGAAaagaa-----ta----gaatc-cctatagatattcattgtttcatcatttacaa-agtacttggtaaagtactttgtgttgtatccaattggaggccccaagcaaccttgagag---agg-cgagcaggcatcacagtc-cctatcgtgcagagggagaagtacgggtgt--aggaaggtgaaacga-cccctccgc-accttacagcagctct-tggcagctccttgccctcaagccc-aagtcttctcattcctgttctctgc-cctttctctgttgccaactg------------------------------------------------------------------------tgctctttccctgttcccaacag-tgagg-gccttgctggaggaagatgtgggtaaaacttcacATTCGGA-CCACTCTCAAATGCT--------------GGG-----ATGGGTT-TTACGGG--AAAGGCATCCTAGGGTCTGGGATCTCCCTAGGGGTGACCTTCCCGGT--------------------GCTATCTTTCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGGGGCTCCCC-GCTTGATGCCGGTTATTGTATCCAA---------AACCCCCTT-----TCCCTTCCTTCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1822816 576 + 1920343 AAACTGGGAGTTGCCAAAGAAGCTCAGCTCACCTCCTGCCATTG-TAAAATCACCTTGTCTATTG---AGAAAGAGAAGAAGAGAaa----ta----gaatc-cctatagatattcattgtttcaccatttacaa-agtacttgttaaagtactttgtgttgtatccagttggaggcctcaaacaaccttgagag---agg-tgagcaggcatcacagtc-cctgtcatgcagagggagaagtacaggtgt--aggaaggtgaaatga-cccctccgc-accttacagcagttct-tggcagctccttgccctcaagccc-aagtcttctcattcctgttcct------------------------------------------------------------------------------------------------cgctttttccctgttccCAACCG-TGAGG-GCCTTGCTGGAGGAAGATGTGGGTAAAACTTCACATTCGGA-CCACTCTCAAATGCT--------------GGG-----ATGGGTT-TTACAGG--AAAGGCATCCTAGGGTCTGGGATCTCCCTAGGGGTGACCTTCCCAGT--------------------GTTGTCTTTCA--------------------------T----------------------------CAGCATTTTAGATTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGAAGCTCCCC-GCTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6934684 576 - 7032639 AAACTGGGAGTTGCCAAAGAAGCTCAGCTCACCTCCTGCCATTG-TAAAATCACCTTGTCTATTG---AGAAAGAGAAGAAGAGAAA----TA----GAATC-CCTATAGACATTCATTGTttcaccatttacaa-agtacttgttaaagtactttgtgttgtatccagttggaggccgcaaacaaccttgagag---agg-cgagcaggcatcacaatc-cctatcgtgcagagggagaagtacaggtgt--aggaaggtgaaatga-cccctccgc-accttacagcagttct-tggcagctcctcgccctcaagccc-aagtcttctcattcctgttccc------------------------------------------------------------------------------------------------cgctctttccctgttcccaactg-TGAGG-GCCTTGCTGCAGGAAGATGTGGGTAAAACTTCACATTCAAA-CCACTCTCAAATGCT--------------GGG-----ATGGGTT-TTACGGG--AAAGGCATCCTAGAGTCTGGGATCTCCCTAGGGGTGACCTTCCCGGT--------------------GCTGTCTTTCA--------------------------T----------------------------CAGCATTTTAGACTCAGCTTCTGGCCTTTGGCCATTGCCT----------------GGAGGCTCTCC-GCTTGATGCTGGTTATTGCATCCAA---------ACCTCCCTT-----TCCCTTCCTTCCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22741342 618 + 28711273 -GACTAAGAATCACCAGAGAAACTCAATCCACCCCCTGCCATCGCTCAAACCACTGTGCCTACTG---AGGAAGAGGAGAAGGGAAAGAGTCA----GATTctcttacagatgttccccg-ttcaccactgacaagagcacct-------tcgtatgtgttg--tccaggttgagctctc---caaccttgagag---gggcagaaggggcatcaacagt-cccat-gtgctctgggagggactcaggcgt--ggggagctgcagtgaccccctccacggcctctcagcaca-gaggggcagctccagcctctcaaggcc--tgtcatcctgcttcttgtctgt-----------------------------------------------------------------------------------------------ggcactttccccatatccaactg-ccAGGCGCCTTGCAGGAGGTACATGTGGATAAAATGTCACATTCAGT-CCACTCTCAAGCACT---------------GC-----ATGGATTGTGGAGGG--AAAGGCTTGCTAGGGTCTGGGCTGCCCCTAAGGATGACCTTTCCAGG--------------------GCTGTCTCCCAACCTGCAGAGGCCTCCCCGGCCAACCT----------------------------CAACATTCCAGGCTGAGCTTCTGGCCTTTTGCTGTTTCCTGGCCC---CCCTCAGAGGAGGGTCCCT--CTTGATGCTGGTAATTGTACCTAAGCCTCCATTGCCTCCCTT-----TCCCCTCACTCC- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21360400 546 + 61074082 -GACTAGAAATCACAAAAGGAGGTCAACTCACCCCCTGACATTGTTAAAAGCACTTTGTCTACTG---AGGAAGAGGAGAAGAGAAA----CAGTCGGaatt-gct-tgcatatccatcccttcaccacttacaa-tgtgccttcacacaggctct--------tcaatttgaaatccccaaac--tcctgggat---aggcagagcagcctcgataatctcccgttttgcaaggggagaagttCATTTTGCAAGGGGAGGAAAATGA-GCCCCCAAG-CTCTCCCAG-------------------TGATCTCTCTCTC-AAGTC---------------CAT-----------------------------------------------------------------------------------------------TGCCCTGTCCCTGCACTCAACTG-CTAGA-G----GCTGGAGGTACATTTGCATAAAACTGTCCATTCAGACCCACTGTCTGATGCT---------------GGCTCACATGGATT-TTACAG---------------GGCTTAGGAATCTCCCCAGGGAGAATCTTCTTGGTCTTTACTCCTATCCTGCAAGGTCCTCCCCAA--------------------------T----------------------------CA-CATTTCAGACTGAGCTTCTGGCCT----CCTTCAGCT-----------------GAGGCTTTCC--CTTTATGTTGGGTTTTGTGCCCAA---------GGCTCCCTTGCTTGCCTCTCCCTTCT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 339703 617 - 852752 -GGGTGGGAATTAACAAAGAAAC----------CCCTGCCTGTACCAAAACTACTTTGTATATTGAGTAGGAAGAGGAGGAGAGAaacaacca----gaataccttatctatgttcctcctgt-gccattcacca-ggcactt----------tgtgtattgt---caaatgaagctcccaaaccaccctaagaggttggc-agaactggcctcgtgact-tccattttgccgtgggggaagtttgggcag--aaggaggctaaatga-ctcctccaaggtctcacatatggtgaggggcagtgttgggcacacaagctc-aagtcttctcctttctggtccat-----------------------------------------------------------------------------------------------tggtcttgccCCA--CAGATCTGCTAACA-GCTTTGCTGAAGGTACATCTGGATGAAACTTCACATTCAGACCCACTTTGCGATGCTGGGGTGAGATGGCTGGG-----ATGGATT-TTACAGGGAAAAGGCATTTCAGAGGCTGGAGACTCCCTAAGGATAATCTTCTTGGT--------------------GCTTTCTCCCA--------------------------TCCTGTAATGTCCCCCCCCACCTCAACCACAACATTTCAGGCTGCACTTTGGGCCTTTGACCATCTCCTGGGCCTGTCCCCCTGGGGAGGCTGGCC--CCTTATGCTGGCCATCCGACCTAC---------ATCTCCCTT-----GGCCT-------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2943632 602 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I a score=808333.000000 s hg38.chr17_GL383564v2_alt 30134 63 + 133151 CCCT----GGTTCTTGGATATCCTATACAACCTGCCTCAGTCATTCACATTGGT------------CTCCAAGGCCCTC s panTro5.chr17 16224005 63 + 83181570 CCCT----GGTTCTTGGATATCCTATACAACCTGCCTCAGTCATTCACATTGGT------------CTCCAATGCCCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16131357 63 + 83442489 CCCT----GGTTCTTGGATATCCTATACAACCTGCCTCAGTCATTCACATTGGT------------CTCCAAGGCCCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3966478 63 + 4267968 CCCT----GGTTCTTGGATATCCTATACAACCTGCCTCAGCCATTCACATTGGT------------CTCCAAGGCCCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946193 63 - 2193130 CCTT----GGTTCTTGGACATCCTATACAACCTGCCTCAGTCATTCACATTGGT------------CTCCAAGGCCCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30019481 63 - 77216781 CCCT----AGTTCTTGGACATCCTATACAACCTGCCTCAGTGATTCACATTGGT------------CTCCAAGGCCCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932077 63 - 80997621 CCCT----AGTTCTTGGACATCCTATACAACCTGCCTCAGTGATTCACATTGGT------------CTCCAAGGCCCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1988346 63 + 10377808 CCCT----AGTTCTTGGACATCCTATACAACCTGCCTCAGTGATTCACATTGGT------------CTCCAAGGCCCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1875793 63 - 8458610 CCCT----AGTTCTTGGACATCCTATACAACCTGCCTCAGTGATTCACATTGGT------------CTCCAAGGCCCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64831510 63 + 75148670 CCCT----AGTTCTTGGACATCCTATACAACCTGCCTCAGTGATTCACATTGGT------------CTCCAAGGTCCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2054694 63 + 4244037 CCCT----AGTTCTTGGACATCCTATACAACCTGCCTCAGTGATTCACATTGGT------------CTCCAAGGCCCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2082844 63 + 4569836 CCCT----GGTTCTTGAACATCCTATACAACCTGCCTCAGTCATTCACATTGGT------------CTCCAAGGCCCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46052187 63 - 159171411 CCCT----GGTTCTTGGACATTCCATACAACCTGCCTCAGTCGTTCACATTGGC------------CTCCAAGGCCCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1774539 63 + 3513951 CCCT----GGTTCTTGGACATTCCATACAACCTGCCTCAGTCATTCACAGTGGC------------CTCCAAGGCCCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1823392 63 + 1920343 CCCT----GGTTCTTGGACATTCCATACAACCTGCCTCAGTCATTCACATTGAC------------CTCTAAGGCCCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6935260 63 - 7032639 CCCT----CGTTCTTGGACATTCCATACAACCTGCCTCAGTCATTCACATTGGC------------CTCCAAGACCCTC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2944234 62 + 8555354 CCCT----GGTTCTTGGACATCCTCTGTAACCTGCCTCAG-CATTCACATTGGC------------CTCCAAAGCCCTC i proCoq1.NW_012135969v1 I 602 I 236 s otoGar3.GL873537 22741960 62 + 28711273 CCTT----GGTTGTTGGACCTCCTATATAACCTGCCTCGG-GGTTCACATTAGC------------CTCCGAAGCCCCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21360946 60 + 61074082 CCCCGTTGGGTTGCCGGACATACTAAAT-ATGTGCCCCAAGGCCATCCATTG------------------AGATGCCTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 340320 70 - 852752 ---------GTTCTCAGACAGTTGATACCATGTGCCTCAGTCACTCACACTGGCTAATACTCTCCACCCCAGGGCCTCC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e micMur3.chr16 35859351 1323 - 65901067 I a score=2762830.000000 s hg38.chr17_GL383564v2_alt 30197 252 + 133151 TGCCCT-CAGGAGGTTTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTGCTCCCTCCGTTTCCCTCCACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTGCTTGATTTACTGTAGGTGCTTTTCTTTTTCTG--CCCACACCACATCCCTGGAATGATTTCCTATGCTGCACCTGGC-AAAAGCCTCTTTCATTTGCTTTGAAACTTACCTTGATGCCCATGGATCCTGTG s panTro5.chr17 16224068 252 + 83181570 TGCCCT-CAGGAGGTTTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTGCTCCCTCCGTTTCCCTCCACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTGCTTGATTTACTGTAGGTGCTTTTCTTTTTCTG--CCCACACCACATCCCTGGAATGATTTCCTATGCTGCACCTGGC-GAAAGCCTCTTTCATTTGCTTTGAAACTTACCTTGATGCCCATGGATCCTGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16131420 252 + 83442489 TGCCCT-CAGGAGGTTTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTGCTCCCTCCGTTTCCCTCCACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTGCTTGATTTACTGTAGGTGCTTTTCTTTTTCTG--CCCACACCacatccctggaatgatttcctatgctgcacctggc-gaaagcctctttcatttgctttgaaacTTACCTTGATGCCCATGGATCCTGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3966541 252 + 4267968 TGCCCT-CAGGAGGTTTCTCTGGTCTCAAGGG-GGCACGACTGTGTCCACTCACCAGCAGGACCGCGTGCTCCCTCCGTTTCCCTCCACCAGCCTTATTCCCCTTTCTATTTCCTCTGCAA-ATTTGCTTGATTTACTGTAGGTGCTTTTCTTTTTCTG--CCCACACCACATCCCTGGAATGATTTCCTATGCTGCACCTGGC-AAAAGCCTCTTTCATTTGCTTTGAAACTTACCTTGATGCCCATGGATCCTGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946256 252 - 2193130 TGCCCT-CAGGAGGTTTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTGCTCCCTCCATTTCCCTCCACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTGCTTGATTTACTGTGGGTGCTTTTCTTTTTCTG--CCCACACCACATCCCTGGAATGATTTCTTATACGGCACCTGGC-AAAAGCCTCTTTCATTTGCTTTGAAACTTACCTTGATGCCCATGGATCCTGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30019544 254 - 77216781 TGCCCT-CAGGAGGTCTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTCCTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGTTACTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCATGTTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932140 254 - 80997621 TGCCCT-CAGGAGGTCTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTACTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGTTACTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCATGTTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1988409 254 + 10377808 TGCCCT-CAGGAGGTCTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTACTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGTTACTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCATGTTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1875856 254 - 8458610 TGCCCT-CAGGAGGTCTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTACTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGTTACTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCATGTTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64831573 253 + 75148670 TGCCCT-CAGGAAGTCTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTACTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGTTACTTTTCTTTTT-TG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCATATTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2054757 254 + 4244037 TGCCCT-CAGGAGGTCTCTCTGGTCTCAAGGG-GGCACAACTGTGTCCACTCACCAGCAGGACTGCGTACTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGTTACTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCATGTTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2082907 254 + 4569836 TGCCCT-TAGGAAGTCTCTCTGGTCACAAGGG-GGCACAACTGTGTCCACTCAGCAGCAGGACTGTGTACTCCCTCTGTTTCCCTCTACCAGCCTTATTCCCCTTTCTATTTCCTCTGTCA-ATTTACTTGATTTACTGTGGGCACGTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTATACTGCACCTGGCAAAAAGCCTGTTTCATTTGCTTTGAAACTTACCTTGACTCCCATGGATCCTGTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46052250 253 - 159171411 CGCCCT-CAGGAGGTCTCTCTGTTCTTGGGGGCGGCACAACTGTGTCCACTCACCAGCAGGAATGCATGCTCCCTCCGCTTGTCTCCACCAGCCTTATTCCCCTTTCTAGTTCCTCTGTCC-ATTTGCTTGACCTACTGTGGGCGCTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTACTCCACACCTGCC-AAAAGC-TCTTTCATTTGCTTTGAAACTTACCTTGACCCCCATGGAGTCTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1774602 253 + 3513951 CGCCCT-CAGGAGTTCTCTCTGTTCTTGGGGGTGGCACAACTGTGTCCACTCACCAGCAGGACTGCATCTTCCCTCTGTTTCTCTCCACCAGCCTTATTCCCCTTTCTAGCTCCTCTGTCC-ATTTGCTTGATCTACTGTGGGTGCTTTTCTTTTTCTG-CCCCACACCACATTCCTGGAATGATTTCTTACTCTACACCTGCC-AAAAGC-TCTTTCATTTGCTTTGAAACTTACCTTGACCCCCACGGACCCTGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1823455 246 + 1920343 CATCCT-CAGGAGGTCTCTCTGTTCTTGGCGGTGGCACAACTGTGTCCACTCACCAGCAGGA-------CTCCCTCCGTTTCTCTCCACCAGCCTTATTCCCCTTTCTAGCTCCTCTGTCT-ATTCGCTTGATCTACTGTGGGTGCTTTTCTTTTTCTG-CCCCACACCACATCCCTGGAATGATTTCTTACTCTATACCTGCC-AAAAGC-TCTTTCATTTGCTTTGAAACTTACCTTGACCCCCACGGACCCTGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6935323 252 - 7032639 CGCTCT-CAGGAGGTCTCTCTGTTCTTGGGGGTGGCACAACTGTGTCCACTCACCAGCAGGACTGCATGCTCCCTCCGTTGCTCTCCACCAGCCTTATTCCCCTTTCTAGCTCCTCTGTCC-ATTTGCTTGATCTACTGT-GGTGCTTTTCTTTTTCTG-CCCCGCACCTCATCCCTGGAATGATTTCTTACTCTACACCTGCC-CAAAGC-TCTTTCATTTGCTTTGAAACTTACCTTGACCCCCACGGACCCTGTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22742022 242 + 28711273 CGGCCC-CAGGAGGTCTCTCTGCTTGCGAGGGTGGCGTAGCTGCGTCTGCCCACTGGCAGGTGCACGTGGTGCCTC-GTTTCCCTCCCCTAGTCTCTTTCCCTTTTCCACGTCCTCTCTCGCATTGGCTTGAGTTACCAT------------TTCTCTG-CCCCAAACCACATCCCTGGAAGGGCTGCTCACATGGCAGGTGCC-AAAAGCCTCTTTCACTTGCTCTGAAACTCATCTCGACACCCATGGATCCCATG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21361006 226 + 61074082 TGCCCTGCAGTGGACCTCTCTCATCCGGAGGGTGGCAGACTTGTGTCTGCTCACCAGCAGGATCACAGATCATCCTCCTTTCCCTACATGAATCTCAGGCCTTTTGGCATATCCTTTTTC--ACTTGCTTGATTTACCATTGCCTCTCCTCCTTCTCCC-ACCCATACTGCATCCCT----------------------------GAAAACCTCTTGCACTTGTTTGGAAGCTCACCCTAATG-CCATGGAACCACTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 340390 222 - 852752 ACCTCC-CTGTTGATCTCTGGGATCATGATGTAGGCAGAA-GGTGGTTGTTCACCGGCAAGTCCATGTGCTACCTCTGTGTCTCTCGGCTAAGCTCACCCCCTCTTTTATTTCCCCTTTC--ATTTGCATGATTTAGCCTTGCCTCTTTTCATTCTTTGACACCATACCACATCCCCAGAATTCCTTCTCACAC-ACACCTGCC-CAGAGCCTCTTTC--------------------------TTATGGGTTT---- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944296 236 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I a score=1273694.000000 s hg38.chr17_GL383564v2_alt 30449 105 + 133151 GGGATGCCACAGGGCT-GAAG--CGATGGGCCATCACCACCGCCTCTCCTGTGGTCTCCAAAGCAACAAGAACCAGATGCCAAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG s panTro5.chr17 16224320 105 + 83181570 GGGATGCCACAGGGCT-GAAG--CGATGGGCCATCACCACCGCCTCTCCTGTGGTCTCCAAAGCAACAAGAACCAGATGCCAAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16131672 105 + 83442489 GGGATGCCACAGGGCT-GAAG--CGATGGGCCATCACCACCGCCTCTCCTGTGGTCTCCAAAGCAACAAGAACCAGATGCCAAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3966793 105 + 4267968 GGGATGCCACAGGGCT-GAAG--CGATGGGCCATCACCACCGCCTCTCCTGTGGTCTCCGAAGCAACAAGAACCAGATGCCAAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946508 105 - 2193130 GGGATGCCACAGGCCT-GAAG--CGATGGGCCATGACCACCACCTCTCCTGTGGTCCCCAAAGCAACAAGAACCAGATGCGAAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30019798 105 - 77216781 GGGATGCCACAGGGCT-GAAG--AGATGGGCCATCACCACTGCCTCTCCTGTGGTCTGCAAAGCAACAAGAACCAGATGCCGAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932394 105 - 80997621 GGGATGCCACAGGGCT-GAAG--AGATGGGCCATCACCACTGCCTCTCCTGTGGTCTGCAAAGCAACAAGAACCAGATGCCGAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1988663 105 + 10377808 GGGATGCCACAGGGCT-GAAG--AGATGGGCCATCACCACTGCCTCTCCTGTGGTCTGCAAAGCAACAAGAACCAGATGCCGAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1876110 105 - 8458610 GGGATGCCACAGGGCT-GAAG--AGATGGGCCATCACCACTGCCTCTCCTGTGGTCTGCAAAGCAACAAGAACCAGATGCCGAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64831826 105 + 75148670 GGGATGCCACAGGGCT-GAAG--AGATGGGCCATCACCACTGCCTCTCTTGTGGTCTGCAAAGCAACAAGAACCAGATGCCGAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2055011 106 + 4244037 GGGATGCCACAGGGCTGGAAG--AGATGGGCCATCACCACTGCCTCTCCTGTGGTCTGCAAAGCAACAAGAACCAGATGCCGAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2083161 105 + 4569836 GGGATGCCACAGGGCT-GAAG--GGATGGGCCATCACCACTGCCTCTCCTGTGGTCTGCAAAGCAACAAGAACCAGATGCCAAAACAATTCATTA---------------------------------------------CCCTGCCTGGCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46052503 102 - 159171411 GGGGTGCCACAGGGCT--AAG--CCATGGGCCATCACCACCACTCTTCCTGCGGTCTCCAAAGCAACAGCAACCAGATACCAAAACAACTTGTTG-----------------------------------------------CTGACCGGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1774855 105 + 3513951 GGGGTGCCACAGGGCT-GAAG--CCATGGGCCATCACCACCACCCCTCCTGTGGTCTCCAAAGCAACAGCAACCAGATACCAAAACAACTCGTTA---------------------------------------------CTCTGCCTGGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1823701 105 + 1920343 GGGATGCCACAGGGCT-GAAG--CCATGGGCCATCACCACCACCCCTCCTGCGGTCTCCAAAGCAACAGCTACCAGATAACAAAACAACTCATTA---------------------------------------------CTCTGCCTGGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6935575 105 - 7032639 GGGATACCACAGGGCT-GAAG--CCATGGGCCATCACCACCACCCCTCCTGCGGTCTCCAAAGCAACAGCAACCAGATACCAAAACAACTCGTTA---------------------------------------------CTCTGCCTGGCTG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2944532 105 + 8555354 GGGATGCCCCAGGGCG-GAAG--CGATGGGCCGTGCCCACCGCCCATCCTGTGGTCTCCAAAGCAACAAGAACCAAATATCGAAATAGCTGATCT---------------------------------------------CTAGGCTTGGTTG i proCoq1.NW_012135969v1 I 236 C 0 s otoGar3.GL873537 22742264 150 + 28711273 TTGACGTCACAGAACT-GAAG--CAATGGGCCACCCCCACCGCCTATCTTGCGGTCTCCAAAGCAACAAGGACAAAATATCAAAATACCTAATCTtgagtggcacctgtgtcccatataccgagggtggtgggtttgaacctggccccggcca i otoGar3.GL873537 C 0 I 204 s canFam3.chr9 21361232 89 + 61074082 GGGGTGCCTTGGGGCA-------------GCCA-CATCAC----TCAGTTATGATCTCCAAAGCAACAAGAACCAAATATCAAAA-AACCAATTA---------------------------------------------CCAGGCCAGGTGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 340612 103 - 852752 ---GTGCCACAATGCC-TGAGTAAGATATGCAGGAACCACCACCACGC-TGAGGTCTCCAAAGCAACGAGATCCAAATATCAAAATACCCAGTTA---------------------------------------------CCATGCCTGGTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e micMur3.chr16 35859351 1323 - 65901067 I a score=1184529.000000 s hg38.chr17_GL383564v2_alt 30554 87 + 133151 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATTCTGCTTATGAGTCACTTAGAGAGCGAAG----CACAAA-- s panTro5.chr17 16224425 87 + 83181570 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATTCTGCTTATGAGTCACTTAGAGAGCGAAG----CACAAA-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16131777 87 + 83442489 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATTCTGCTTATGAGTCACTTAGAGAGCGAAG----CACAAA-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3966898 87 + 4267968 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAAGAGTTCTCTGAATTCTGCTTATGAGTCACTTAGAGAGCAAAG----CACAAA-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946613 87 - 2193130 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTGTGAATTCTGCTTATGAGCCACTTAGAGAGCGAAG----CACAAA-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30019903 85 - 77216781 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCGAAG----CACAAA-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932499 85 - 80997621 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCGAAG----CACAAA-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1988768 85 + 10377808 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCGAAG----CACAAA-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1876215 85 - 8458610 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCGAAG----CACAAA-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64831931 85 + 75148670 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCGAAG----CACAAA-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2055117 85 + 4244037 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCGAAG----CACAAA-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2083266 85 + 4569836 AAGACTAGATTATTAAAGAGAACAAGATTCT-ACTGAGAACAGTTCTCTGAATCCTGCT--TGAGTCACTTAGAGAGCAAAG----CACAAA-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46052605 87 - 159171411 AAGACTAGATTGTTAAAGGTGACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCCTGTGAGTCACTTAGAGAGCGAAG----CAGAAA-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1774960 87 + 3513951 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCCTGTGAGTCACTTAGAGAGTGAAG----CACAAA-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1823806 87 + 1920343 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTTCTCTGAATCCTGCCTGTGAGTCACTTAGAGAGTGAAG----CACAAA-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6935680 87 - 7032639 AAGACTAGATTATTAAAGGGAACAAGATTCT-AATGAGAACAGTGCTCTGAATCCTGCCTGTGAGTCACTTAGAGAGCGAAG----CACAAA-- i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2944637 87 + 8555354 AAGAAAAGATTCTTAAACGGATTAAGATTCT-AATGAGATCAGTTCTTTGAATCCTGCCTATGAGTCACCCAGAGAGCGGAG----CACAAA-- i proCoq1.NW_012135969v1 C 0 I 343 s otoGar3.GL873537 22742618 87 + 28711273 AAGAAAAGATTCTTAAAGGGA-CAGGATTCTAAATGAGATCAGTTCTTTGAATCCTGTCTATGAGTCACCTAGAGAGTGGGG----CACAAA-- i otoGar3.GL873537 I 204 C 0 s canFam3.chr9 21361321 91 + 61074082 AAGACTGGATTCTTAAAGGGATTAGGGTCCT-GATGAGACCACATGTTTGAAATCTATTCCTGAGTCATCTAGAGAGTGGGGTCACTACCAA-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 340715 78 - 852752 AAGAAAAGGTTGTTAAGGGGATTATGATTCT-AATGAGGTCAGTTCTTTGAATCCTACT-----------TAGAGAAAGGGG----CAACAATA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e micMur3.chr16 35859351 1323 - 65901067 I a score=3101010.000000 s hg38.chr17_GL383564v2_alt 30641 281 + 133151 -AAACTCTT---TGGGAT-CAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCGTGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTGAATGGGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGGGAAGGCCC-A-----ATCACAttacattat-gct------agctgtgga----cctgtctgctcagc----aggactcagagttcc-tggg-ggcagggacatgacatacccccactcccca-----ccatgtcccctgcccctggg--------actgt s panTro5.chr17 16224512 281 + 83181570 -CAACTCTT---TGGGAT-CAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCGTGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTGAATGCGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACATTACATTAT-GCT------AGCTGTGGA----Cctgtctgctcagc----aggactcagagttcc-tggg-tgcagggacatgacataccccccctcccca-----ccatgtcccctgcccctggg--------actgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16131864 281 + 83442489 -CAACTCTT---TGGGAT-CAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCGTGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTGAATGCGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACATTACATTAT-GCT------AGCTGTGGA----Cctgtctgctcagc----aggactcagagttcc-tggg-tgcagggacatgacataccccccctcccca-----ccatgtcccctgcccctggg--------actgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3966985 280 + 4267968 -CTACTCTT---TGGGAT-CAAGAGCATAACCTGAAATGGCTTCA-TTCCCTCGCCGTGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTGAATGGGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACATTACATTAT-GCT------AGCTGTGGA----Cctgtctgctcagc----aggactcagagttcc-tggg-tgcagggacatgacataccccc-ctcccca-----ccatgtcccctgcccctggg--------actgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946700 281 - 2193130 -CAGCTCTT---TGGGAT-CAAGTGCATAACCTGAAATGGCTTCA-TCCCCAAGCTGTGTGGCTGAAAATCATGAGCTGGATTGGAATGTCCTGAATGGGGTTTGGGTCAGGGG---TGGATGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACATTACATTAT-GCT------AGCTGTGGA----Cctgactgctcagc----aggactcagagttcc-tggg-ggcagggacatgacatacccccactcccca-----ccatgtcccctgcccctgag--------actgt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30019988 282 - 77216781 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATAGCTTCA-TCTCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCTC-A-----ATCACATTACATTAT-GTT------AGCTGTGGA----CCTGTCTGCTTAGC----AGGACTCAGAGTTCC-CGGGTGGTGGGGACATGACATGCCCCCACTCCCCA-----CAATGTTCCCCGCCCCTGGG--------ACTGT i rheMac8.chr16 C 0 I 6 s macFas5.chr16 27932584 282 - 80997621 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATAGCTTCA-TCTCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACATTACATTAT-GTT------AGCTGTGGA----Cctgtctgcttagc----aggactcagagttcc-cgggtggtggggacatgacatgcccccactcccca-----caatgtcccccgcccctggg--------actgt i macFas5.chr16 C 0 I 6 s macNem1.NW_012014910v1 1988853 282 + 10377808 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATAGCTTCA-TCCCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGccc-a-----atcacattacattat-gtt------agctgtgga----cctgtctgcttagc----aggactcagagttcc-tgggtggtggggacatgacatgcccccactcccca-----caatgtcccccgcccctggg--------actgt i macNem1.NW_012014910v1 C 0 I 6 s cerAty1.NW_012006043v1 1876300 283 - 8458610 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGccc-a-----atcacattacattat-gtt------agctgtgga----cctgtctgcttagc----aggactcagagttct-cgggtggtggggacatgacatgcccccactcccca-----caatgtcccccgcccctggg--------actgt i cerAty1.NW_012006043v1 C 0 I 12 s chlSab2.chr16 64832016 282 + 75148670 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACAATACATTAT-GTT------AGC-GTGGA----CCTTTCTGCTTAGC----AGGACTCAGAGTTCC-CGGGTGGTGGGGACATGACATGCCCCCACTCCCCA-----CAATGTCCCCCGCCCCTGGG--------ACTGT i chlSab2.chr16 C 0 I 6 s manLeu1.NW_012106252v1 2055202 283 + 4244037 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTGGGGGAAGGAGATATTTTTGGGTGAAGGccc-a-----atcacattacattat-gtt------agctgtgga----cctgtctgcttagc----aggactcagagttcc-cgggtggtggggacatgacatgcccccactcccca-----caatgtcccccgcccctggg--------actgt i manLeu1.NW_012106252v1 C 0 I 6 s colAng1.NW_012122154v1 2083351 282 + 4569836 -CAACTCTT---TGGGATACAAGTGCATAACCTGAAATGGCTTCA-TCCCCTCGCCATGTGGCTGAAAATCATGAGCTGGATTGGAATGCCCTAAATGGGGTTTGGGTCAGGGG---TGGGTGTAGGAAGAAATGG----AGTGGGTAGGGGAAGGAGACATTTTTGGGTGAAGGccc-a-----atcacattacattat-gtt------agctgtgga----ccggtctgtttagc----aggactcagagttcc-tggg-ggcagggacatgacatgcccccactcccca-----caatatcccctgcccctgag--------actgt i colAng1.NW_012122154v1 C 0 I 6 s calJac3.chr5 46052692 264 - 159171411 -CGACTGTT---TGGGATACAAGTGTGTAACCTGAGAAGGCTTCA-TCCCCTCACCGTGTGGCTGGAAATCATGAGCTGGACTGGAACGCCCTGAATGGGATTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----ACTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGCCC-A-----ATCACGTTACATTAT-GCT------AGCTCTGGACCTGCCTGTCTGTTCAGC----A-----------------------GGGGACATGACATACCCCCACtcccca-----ccatgtcccctgctaccagg--------actgt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775047 287 + 3513951 -CAACTATT---TGGAACACAAATGCGTAACCTGAAAAGGCTTCA-TCCCCTCACCGTGTGGCTGAAAATCATGAGCTGGACTGAAACGCCCTGAATGGGGTTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----GCTGGGTAGGGGAAGGAGCTATTTTTGGGCGAAGGTCC-A-----ATCACATTACATTAT-GCT------AGCTCTGGACCCACctgtctgctcagc----aggactccgagttccttggggggcggggatatgatacacccccactcccca-----ccatgtcccctgctcccagg--------actgt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1823893 294 + 1920343 -TGACTATT---TGGGATACAAGTGCGTAACCTGAAAAGGCTTCA-TCCCCTCAGCGTGTGGCTGAAAATCATGAGCTGGACTGGAACGCCCTGAATGGGGTTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----ACTGGGTAGGGGAAGGAGATGTTTTTGGGCGAAGGccc-a-----atcacattacattat-gct------agctctggacccacctgtctgttcagc----aggactccgagttcc-tggggggcagggacatgacatacccccactctcca-----ccatgtcccctgctcccaggactgtgccactgt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6935767 287 - 7032639 -CGACTATT---TGGGATACAAGTGCGTAACCTGAAAAGGCTTCATTCCCCTCACCGTGTGGCTGAAAATCATGAGCTGGACTGGAACGCCCTGAATGGGGTTTGGGTCA-GGG---TGGGTGTAGGAAGAAATGG----ACTGGGTAGGGGAAGGAGATATTTTTGGGTGAAGGccc-a-----atcacattacattat-gct------agatctggactcgcctgtctgctcagc----aggactccgagttcc-tggggggccgggacatgacatacctccactcccca-----ccatgtcccctgctcctagg--------actgt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22742705 291 + 28711273 -TAAATCTCCTGCAGGACACAGGTTAATCATCTGAAATGGCTTCA-GCCCTCCCCCTTGTGGCTGGGAATCGTGGACTGGATTGAAATAGCTGGACTGCGGTTTGGGGCA-GGATTTTGGGTATGAGAAGAAGCGGGGAAAGGGCAGAGGAGAAGGAACTTTTGTGGGGTACAGGTCCTA-----ATTTTATTACATTAT-GCT------AGCTGTGGC----CCTGTCTGCTCAGC----AGCTCTGGCAGCTGC-TGGAAGGCAGGGACATGCCACACTGCC-CTCTGCA-----CCATGTCCTTTGC-CCTGGT--------ACTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21361412 276 + 61074082 -GTCTCCTT---CTGGATACAGATAAATAACCTGAAATGGTCTCA-TCCCCCATCTCTG-GGC--AGAGTCAGAAACCGGTTTGAAATGAACTGA-------------TAGGAA---TAGGTGTGGGAAGAAGTGG----A---GGAAGAAGGAAGAAATTTTTCAGAGGAAGGGCCC-AACTGTatcaccttacattagagtt------tgttgtggatccatctgtctgctcagt----aggaccaagagctaa-cagaggaccgtggcatgtcatctccctaccatccctgcatccccgtccccagccct---g--------gctgt i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 340793 270 - 852752 AAGTTCCTT---CAGGGTGCAGGTAAATAATCCTAAACAGCTTCA-TCCTTTCCACATCTGGCTGAGAATCATGAACT--ATTGAAGTGACCTGACTTACAGTCTAGGCAGAAG---TAGGTATGGGAGGAAGGGG----GGTGGGTGAGGGCATGAGC-------------ACGCCC-A-----GTCACTTTACATCAT-ATCACAGGGAGGtatata----tctgtctgttcgttccaagggactgagagctcc-tgagcg--aggggcatgtcat-------ctcccca-----ccatttccccagttcctggg--------actgt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I a score=39519.000000 s hg38.chr17_GL383564v2_alt 30922 5 + 133151 gccaa s panTro5.chr17 16224793 5 + 83181570 gccaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132145 5 + 83442489 gccaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967265 5 + 4267968 gccaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946981 5 - 2193130 gccaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020276 5 - 77216781 GCAGA i rheMac8.chr16 I 6 I 1 s macFas5.chr16 27932872 5 - 80997621 gcaga i macFas5.chr16 I 6 I 1 s macNem1.NW_012014910v1 1989141 5 + 10377808 gcaga i macNem1.NW_012014910v1 I 6 I 1 s chlSab2.chr16 64832304 5 + 75148670 GCAGA i chlSab2.chr16 I 6 I 1 s manLeu1.NW_012106252v1 2055491 5 + 4244037 gcaga i manLeu1.NW_012106252v1 I 6 I 1 s colAng1.NW_012122154v1 2083639 5 + 4569836 gcaga i colAng1.NW_012122154v1 I 6 I 1 s calJac3.chr5 46052956 5 - 159171411 gccaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775334 5 + 3513951 gccaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824187 5 + 1920343 gccaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936054 5 - 7032639 gccaa i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22742996 5 + 28711273 GTCAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21361688 5 + 61074082 gccag i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 341063 5 - 852752 accat i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e cerAty1.NW_012006043v1 1876583 12 - 8458610 I a score=69553.000000 s hg38.chr17_GL383564v2_alt 30927 5 + 133151 gcaca s panTro5.chr17 16224798 5 + 83181570 gcaca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132150 5 + 83442489 gcaca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967270 5 + 4267968 gcaca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946986 5 - 2193130 gcaca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020282 5 - 77216781 GCACA i rheMac8.chr16 I 1 C 0 s macFas5.chr16 27932878 5 - 80997621 gcaca i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 1989147 5 + 10377808 gcaca i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1876595 5 - 8458610 gcaca i cerAty1.NW_012006043v1 I 12 C 0 s chlSab2.chr16 64832310 5 + 75148670 GCACA i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2055497 5 + 4244037 gcaca i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2083645 5 + 4569836 gcaca i colAng1.NW_012122154v1 I 1 C 0 s calJac3.chr5 46052961 5 - 159171411 gcaca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775339 5 + 3513951 gcaca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824192 5 + 1920343 gcaca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936059 5 - 7032639 gtaca i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22743001 5 + 28711273 GCACA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21361693 5 + 61074082 gtgtt i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 341068 5 - 852752 gcaca i dasNov3.JH570468 C 0 I 27 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I a score=496787.000000 s hg38.chr17_GL383564v2_alt 30932 46 + 133151 cagtagatgttcaacaagtgACTAATGCCCATAATGTCACATGTAC s panTro5.chr17 16224803 46 + 83181570 cagtagatgttcaacaagtgACTAATGCCCATAATGTCACATGAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132155 46 + 83442489 cagtagatgttcaacaagtgACTAATGCCCATAATGTCACATGAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967275 46 + 4267968 cagtagatgttcaacaagtgACTAATGCCCATACTGTCACATGTAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1946991 46 - 2193130 cagtagatgttcaacaagtgACTAATGCCCATAATATCACATGTAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020287 46 - 77216781 CAGTAGATGTTCAACAAGTGACTAATGCCCATAATGTCACACGTAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932883 46 - 80997621 cagtagatgttcaacaagtgACTAATGCCCATAATGTCACACGTAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989152 46 + 10377808 cagtagatgttcaacaagtgACTAATGCCCATAATGTCACACGTAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1876600 46 - 8458610 cagtagatgttcaacaagtgACTAATGCCCATAATGTCGCACGTAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832315 46 + 75148670 CAGTAGATGTTCAACAAGTGACTAATGCCCATAATGTCACACGTAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2055502 46 + 4244037 cagtagatgttcaacaagtgACTAATGCCCATAATGTCGCACGTAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2083650 46 + 4569836 cagtagatgttcaacaagtgACTAATGCCCATAATGTCACACGTAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46052966 46 - 159171411 cagtagatgttcaacaagtgACTAATACCCATAACGCCATGCGTAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775344 46 + 3513951 cagtggatgttcaacaagtgACTAATACCCATAATGCCATGCGTAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824197 46 + 1920343 cagtagatgttcaacaagtgACTAATTCCCATAGTGCCATGCATAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936064 46 - 7032639 cagtagatgttcaacaagtgACTAATACCCATAATGCCATGCATAC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22743006 38 + 28711273 TAGCGGATATC-------TGATTGCTGCCT-CAATGTCTTGTGTAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21361698 46 + 61074082 tgacagatgttcagtaaatgaCTTCTGCCTTTAACGTGGTATATGT i canFam3.chr9 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I a score=6929.000000 s hg38.chr17_GL383564v2_alt 30978 2 + 133151 AG s panTro5.chr17 16224849 2 + 83181570 AG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132201 2 + 83442489 AG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967321 2 + 4267968 AG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947037 2 - 2193130 AG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020333 2 - 77216781 AT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932929 2 - 80997621 AT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989198 2 + 10377808 AT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1876646 2 - 8458610 At i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832361 2 + 75148670 AT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2055548 2 + 4244037 At i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2083696 2 + 4569836 AG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053012 2 - 159171411 AG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775390 2 + 3513951 AG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824243 2 + 1920343 AG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936110 2 - 7032639 AG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22743044 2 + 28711273 TA i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I e canFam3.chr9 21361744 0 + 61074082 C a score=1733638.000000 s hg38.chr17_GL383564v2_alt 30980 196 + 133151 ttttctttttatttatttttaatttttagatggggtcttgctgtcgcccaggctggagtgccgaggtgtgatcatggctcactgtaacctcaaattcctgggctcaagcaatcatcctgcctcagcctccagagcatctggaactaaaatgtgctctaccaagcctggctcatttttAAAttttattttattttta s panTro5.chr17 16224851 196 + 83181570 ttttctttttatttatttttaatttttagatggggtcttgctgtcgcccaggctggagtgccgaggtgtgatcatggctcactgtaacctcaaattcctgggctcaagcaatcatcctgcctcagcctccagagcatctggaactaaagtgtgctccaccaagcctggctcatttttAAAttttattttattttta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132203 196 + 83442489 ttttctttttatttatttttaatttttagatggggtcttgctgtcgcccaggctggagtgccgaggtgtgatcatggctcactgtaacctcaaattcctgggctcaagcaatcatcctgcctcagcctccagagcatctggaactaaagtgtgctccaccaagcctggctcatttttAAAttttattttattttta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967323 196 + 4267968 ttttctttttatttatttttaatttttagatggggtcttgctgtcgcccaggctggagtgctgaggtgtgatcgtggctcactgtaacctcaaattcctgggctcaggcaatcatcctgcctcagcctccagagcatctggaactaaagtgtgctccaccaagcctggcTCATTTTAAAAttttattttattttta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947039 196 - 2193130 ttttcttttcatttatttttaatttttagatggggtcttgctgtcgcccaggctggagtgccatggtgtgatcatggctgactgtaacctcaaattcctgggctcaagaaattctcctgcctcagcctccagagcatctggaactaaagtgtactccaccaagcctggctcatttttAAAttttattttattttat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020335 196 - 77216781 TTTTCtttttatttatttttaatttttagatggggtcttgctgttgcccaagttggagtgccgtggcatgatcttggctcactgtaacctcaaattcatgggctcaagcaatcctcctgcctcagcctccagaacatctgggactaaagtgtgctccaccaagcctggcTCGTTTTTAAAttttattttattttaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27932931 196 - 80997621 TTTTCtttttatttatttttaatttttagatggggtcttgctgttgcccaagttggagtgccgtggcatgatcttggctcactgtaacctcaaattcatgggctcaagcaatcctcctgcctcagcctccagaacatctgggactaaagtgtgctccaccaagcctggcTCGtttttaaattttattttattttaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989200 196 + 10377808 TTTTCtttttatttatttttaatttttagatggggtcttgctgttgcccaagttggagtgccgtggcatgatcttggctcactgtaacctcaaatccatgggctcaagcaatcctcctgcctcagcctccagaacatctgggactaaagtgtgctccaccaagcctggcTCGtttttaaattttattttattttaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1876648 196 - 8458610 ttttctttttatttatttttaatttttagatggggtcttgctgttgcccaagttggagtgccgtggcatgatcttgactcactgtaacctcaaattcctgggctcaagcaatcctcctgcctcagcctccagaacatctgggactaaagtgtgctccaccaagcctggcTCATTTTAAAAttttattttattttaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832363 196 + 75148670 TTTTCtttttatttatttttgatttttagatggggtcttgctgttgcccaagttggagtgctgtggcatgatcttggcttactgtaacctcaaattcctgggctcaagcaatcctcctgcctcagcctccagaacatctgggactaaagtgtgctccaccaagcctggcTCGTTTTAAAAttttattttattttaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2055550 195 + 4244037 ttttctttttatttatttttaatttttagatggggtcttgctgttgctcaagttggagtgccgt-gcatgatcttggctcactgtaacctcaaattcctgggctcaagcaatccttctgcctcagccaccagaacatctgggactaaagtgtgctccaccaagcctggctcattttaaaattttAttttattttaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2083698 196 + 4569836 ttttctttttatttatttttaatttttagatggggtcttgctgttgcccaagttggagtgctgtggtgtgatcttggctcactgtaacctcaaattcctgggctcaagcaatcctcctgcctcagcctccagagcatctgggactaaagtgtgctccaccaggcctggctcatttttAAAttttattttattttaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053014 167 - 159171411 tt---tttaaatttatttttaatatttagatggggtctt------gcccaggttggaatgcagtggcatgattatgactcattgtaacctcaaattcctgggctcaagcaattctcctgcttctgcctcccaagtagctgggactaaagtgtgctctgccaagcctggcTCAtttt-------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775392 173 + 3513951 TT---TTAAAAtttatttttaatttttagatggggtcttgctgtcgcccaggttgggatgcagtggcgtgattatggctcactgtaacctcaaattcctgggctcaagcaatcctcctgcctcagtctcccaagcagctgggactaatgtatgctccaccaagcctggcTCAtttt-------------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824245 173 + 1920343 tt---tttacatttatttttaatttttagatggagtcttgctgtcacccgggttggaatgtagtggcgtgattgtggctcactgtaacctcaaattcctgggctcaagcaatcctcttgcttcagtctcccaagcagctgggaccaatgtgtgctccaccaagcctggcTCAtttt-------------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936112 173 - 7032639 tt---ttttcatttattttcaatttttagatggggtcttgctgtcgcccaggttggaatgaagtggcatgattatggctcactgtaacctcaaattcctgggctcaagcaatcctcctgcctcagtttcccaagcggctgggactaaagtgtactccaccaagcctggcTCAtttt-------------------- i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22027309 1033 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I e canFam3.chr9 21361744 0 + 61074082 C e otoGar3.GL873537 22743046 0 + 28711273 C a score=69774.000000 s hg38.chr17_GL383564v2_alt 31176 7 + 133151 ttttttt--- s panTro5.chr17 16225047 7 + 83181570 ttttttt--- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132399 7 + 83442489 ttttttt--- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967519 7 + 4267968 ttttttt--- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947235 7 - 2193130 ttttttt--- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020531 7 - 77216781 ttttttt--- i rheMac8.chr16 C 0 I 1 s macFas5.chr16 27933127 7 - 80997621 ttttttt--- i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 1989396 7 + 10377808 ttttttt--- i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1876844 7 - 8458610 ttttttt--- i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64832559 7 + 75148670 ttttttt--- i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2055745 7 + 4244037 ttttttt--- i manLeu1.NW_012106252v1 C 0 I 277 s colAng1.NW_012122154v1 2083894 7 + 4569836 tattttt--- i colAng1.NW_012122154v1 C 0 I 1 s calJac3.chr5 46053181 7 - 159171411 ttttttt--- i calJac3.chr5 C 0 I 3 s saiBol1.JH378271 1775565 7 + 3513951 ttttttt--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824418 7 + 1920343 ttttttt--- i cebCap1.NW_016107730v1 C 0 I 7 s aotNan1.NW_018502359v1 6936285 7 - 7032639 ttttttt--- i aotNan1.NW_018502359v1 C 0 I 4 s mm10.chr11 22028342 7 - 122082543 ---ttttacg i mm10.chr11 I 1033 C 0 e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I e canFam3.chr9 21361744 0 + 61074082 C e otoGar3.GL873537 22743046 0 + 28711273 C a score=1666540.000000 s hg38.chr17_GL383564v2_alt 31183 165 + 133151 agatggagtttcgctttt--gttgcccaggctggagtgca----atggcgtgatctccgctcaccgcaacctccgcctcccgggttcaagagattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgtccggctaattttgaaactcatttt s panTro5.chr17 16225054 165 + 83181570 agatggagtttcgctttt--gttgcccaggctggagtgca----atggcgtgatctctactcaccgcaacctccgcctcccgggttcaagagattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccaggtccggctcattttgaaactcatttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132406 166 + 83442489 agatggagtttcgctttttgtttgcccaggctggagtgca----atggcgtgatctctactcaccgcaacctccgcctcccgggttcaagagattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccaggtccggctcattttgaaactca-ttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967526 165 + 4267968 agatggagtttcgctttt--gttgcccaggctggagtgca----atggagtgatctccgctcaccgcaacctccgcctcccgggttcaagagattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgtccggctaattttgaaactcatttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947242 165 - 2193130 agatggagtttcgctctt--gttgcccaggctggagtgca----atggcgtgatctccgctcaccgcaacctccgccccctgggttcaagcgattttcctgcctcagcctcccaagtgcctgggattacaggcatgtgccaccacgcctggctaattttgaagctcatttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020539 165 - 77216781 agatggagtttcgctctt--gttgcccaggctggagagca----atgttacgatctctgctcaccgcaacctccgcctcttgggttcaagcgattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgcccggctaattttgaaactcatttt i rheMac8.chr16 I 1 C 0 s macFas5.chr16 27933135 165 - 80997621 agatggagtttcgctctt--gttgcccaggctggagagca----atgttacgatctctgctcaccgcaacctccgcctcttgggttcaagcgattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgcccggctaattttgaaactcatttt i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 1989404 165 + 10377808 agatggagtttcgctctt--gttgcccaggctggagagca----atgttacgatctctgctcaccacaacctccgcctcttgggttcaagcgattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgcccggctaattttgaaactcatttt i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1876852 165 - 8458610 agatggggtttcactctt--gttgcccaggctggagtgca----atgttatgatatctgctcactgcaacctccgccttctgggttcaagcgattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgctcggctaattttgaaactcatttt i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64832567 165 + 75148670 agatggagtttcgctctt--gttgcccaggctggagtgca----atgttacgatctctgctcactgcaacctccgcctcctgggttcaagcgattttcctgcctcagcctcccaagtggctggaattacaggcatgtgccaccacgcccggctaattttgaaactcatttt i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2056029 165 + 4244037 agatggagtttcgctctt--gttgcccaggctggagtgca----atgttacaatctctgctcactgcaacctccgcctcctgggttcaagggattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccaccacgcccggctaattttgaaactcatttt i manLeu1.NW_012106252v1 I 277 C 0 s colAng1.NW_012122154v1 2083902 165 + 4569836 agatagagtttcgctctt--gttgcccaggctggagtgca----acgttacgatctctgctcaccgcaacctccgcctcctgggttcaagcgattttcctgcctcagcctcccaagtggctgggattacaggcatgtgccactatacccggctaattttgaaactcatttt i colAng1.NW_012122154v1 I 1 C 0 s calJac3.chr5 46053191 165 - 159171411 agatggagtttcaccctt--gctgcccaagctggagtgca----atggcacgatctcagctcactgcaacctctgcctgccaggttcaagcaattctcctgcctctgcctcccaagtagctgggattacaggcatgcgccatcatgtccagctaattttataactcatttt i calJac3.chr5 I 3 C 0 s saiBol1.JH378271 1775572 165 + 3513951 agatggagtttcactctt--gctgcccaggctggagtgca----atggcacgatctcagctcaccacaacctctgcctcccaagttcaagcaattctcctgcctcagcctcccaagtagctgagattacaggcatgcgccatcatgcccagctaattttataactcatttt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824432 165 + 1920343 agatggagtttcactctt--gctgcccaggctggagtgca----atggcacgatctcagctcaccgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgcaccatcatgcccagctaattttataactcatttt i cebCap1.NW_016107730v1 I 7 C 0 s aotNan1.NW_018502359v1 6936296 165 - 7032639 aaatggagtttcactcgt--gctgcccaggcgggagtgca----acggcactatctcagctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcatgtgccatcacacccagctaattttgtaactcatttt i aotNan1.NW_018502359v1 I 4 C 0 s mm10.chr11 22028349 150 - 122082543 agacagggtttctct-gt--gtagccctggctgtcctggaactcactctgtagaccaggctggcctcaaactc---------------agagatctgcctgcctctgcctcccaagt-gctgggatttaaggtgtgcaccaccatgcccggctAA--AAGAAGAATATTTT i mm10.chr11 C 0 I 134 e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I e canFam3.chr9 21361744 0 + 61074082 C e otoGar3.GL873537 22743046 0 + 28711273 C a score=1132898.000000 s hg38.chr17_GL383564v2_alt 31348 115 + 133151 taa--t-tttttttgtagacatggggtcttgctatattgcccaggctagtcttgaactcatgggctcaagtgattctcccacctcagcctcccaaagtgctgagattacagatgcaag s panTro5.chr17 16225219 115 + 83181570 taa--t-tttttttgtagacatggggtcttgctatattgcccaggctagtcttgaactcgtgggctcaagtgattctcccacctcagcctcccaaagtgctgagattacagatgcaag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132572 115 + 83442489 taa--t-tttttttgtagacatggggtcttgctatattgcccaggctagtcttgaactcgtgggctcaagtgattctcccacctcagcctcccaaagtgctgagattacagatgcaag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967691 115 + 4267968 taa--t-tttttttgtagacatggggtcttgctatattgcccaggctagtcttgaactcatgggctcaagtgattctcccacctcagcctcccaaagtgctgagattacagatgcaag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947407 114 - 2193130 taattt-tttttttgtagacatgggg---tgctatgttgcccaggctagtcttgaactcatgggctcaagtgattctccaacctcagcctcccaaagtgctgagattacagatgcaag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020704 116 - 77216781 taa--tatttttttgtagacatggggtctcgttaagttgcccaggctagtcttgaactcatgggctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933300 116 - 80997621 taa--tatttttttgtagacatggggtctcgttaagttgcccaggctagtcttgaactcatgggctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989569 116 + 10377808 taa--tatttttttgtagacatggggtctcgttaagttgcccaggctagtcttgaactcatgggctcaagtgatcctcccacctcagcctcccaaagtggtgagattacagatgcaag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877017 116 - 8458610 taa--tatttttttgtagacatggggtctcgttaagttgcccaggctagtcttgaactcatgggctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832732 116 + 75148670 taa--tatttttttgtagacatggggtctcgttaagttgcccaggctagtcttgaactcatggtctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056194 116 + 4244037 taa--tatttttttgtagacatggggtctcgttaagttgcccaggctagtcttgaactcatgggctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084067 116 + 4569836 taa--tttttttttgtagacatggggtctcgttatgttgcccaggctagtcttgaacacatgggctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053356 111 - 159171411 gaa----tttttttgtagacatggggttttgcaatgttgcccaggctggtcttgaactcatgggctcaggtga---tcccacctcagcctcccaaagtgctgagattacagatgccag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775737 115 + 3513951 gaa--t-tttttttggagacatggggttttgctatgttgcccaggctgatcttgaactcatgggctcaagtgatcctcctacctcagcctcccaaagtgctgagattacagatgcaag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824597 114 + 1920343 gaa----tttttttctagacaaggggttttgctatgttgcccaggatggtcttgaactcgtgggctcaagtggtcctcccacctcagcctcccaaagtgctgagatgacaggtgcaag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936461 115 - 7032639 gaa--t-tttttttgtagatatggggtttcgctatgttgcccaggctggtcctgaactcatgggctcaagtgatcctcccacctcagcctcccaaagtgctgagattacagatgcaag i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22028499 134 - 122082543 I e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I e canFam3.chr9 21361744 0 + 61074082 C e otoGar3.GL873537 22743046 0 + 28711273 C a score=80428.000000 s hg38.chr17_GL383564v2_alt 31463 9 + 133151 ccactgcac s panTro5.chr17 16225334 9 + 83181570 ccactgcac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132687 9 + 83442489 ccactgcac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967806 9 + 4267968 ccactgcac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947521 9 - 2193130 ctactgcac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020820 9 - 77216781 ccactgtgc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933416 9 - 80997621 ccactgtgc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989685 9 + 10377808 ccactgtgc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877133 9 - 8458610 ccactgtgc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832848 9 + 75148670 ccactgtgc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056310 9 + 4244037 ccactgtgc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084183 9 + 4569836 ccactgtgc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053467 9 - 159171411 ccactgtgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775852 9 + 3513951 ccactgtgg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824711 9 + 1920343 ccactgtgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936576 9 - 7032639 ccaccgtgg i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22028633 9 - 122082543 CTGCTGCCC i mm10.chr11 I 134 C 0 e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e dasNov3.JH570468 341073 27 - 852752 I e canFam3.chr9 21361744 0 + 61074082 C e otoGar3.GL873537 22743046 0 + 28711273 C a score=96672.000000 s hg38.chr17_GL383564v2_alt 31472 8 + 133151 ccagTACC s panTro5.chr17 16225343 8 + 83181570 ccagTACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132696 8 + 83442489 ccagTACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967815 8 + 4267968 ccagTACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947530 8 - 2193130 ccagTACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020829 8 - 77216781 ccagTATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933425 8 - 80997621 ccagTACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989694 8 + 10377808 ccagTACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877142 8 - 8458610 ccagTACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832857 8 + 75148670 ccagTACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056319 8 + 4244037 ccagTACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084192 8 + 4569836 ccagTACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053476 8 - 159171411 ccagTACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775861 8 + 3513951 ccagTACC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824720 8 + 1920343 ccagTACC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936585 8 - 7032639 ccagTACC i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22028642 8 - 122082543 TTAATATC i mm10.chr11 C 0 C 0 s dasNov3.JH570468 341100 8 - 852752 CCACAAAC i dasNov3.JH570468 I 27 C 0 e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e canFam3.chr9 21361744 0 + 61074082 C e otoGar3.GL873537 22743046 0 + 28711273 C a score=-1213.000000 s hg38.chr17_GL383564v2_alt 31480 1 + 133151 C s panTro5.chr17 16225351 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132704 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967823 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947538 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020837 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933433 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989702 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877150 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832865 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056327 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084200 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053484 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775869 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824728 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936593 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22028650 1 - 122082543 A i mm10.chr11 C 0 I 1 s canFam3.chr9 21361744 1 + 61074082 C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 341108 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2944724 343 + 8555354 I e micMur3.chr16 35859351 1323 - 65901067 I e otoGar3.GL873537 22743046 0 + 28711273 C a score=6528.000000 s hg38.chr17_GL383564v2_alt 31481 1 + 133151 G s panTro5.chr17 16225352 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132705 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967824 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947539 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020838 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933434 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989703 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877151 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832866 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056328 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084201 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053485 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775870 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824729 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936594 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35860674 1 - 65901067 G i micMur3.chr16 I 1323 C 0 s proCoq1.NW_012135969v1 2945067 1 + 8555354 G i proCoq1.NW_012135969v1 I 343 C 0 s mm10.chr11 22028652 1 - 122082543 A i mm10.chr11 I 1 I 7 s canFam3.chr9 21361745 1 + 61074082 A i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 341109 1 - 852752 G i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22743046 0 + 28711273 C a score=2831264.000000 s hg38.chr17_GL383564v2_alt 31482 196 + 133151 TTTTCTATTTACACTG-----AATACAAACATATTTCTAA--ATGCCCATCTTACACC----TTCTAAATATCTCCTTTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGAGGACCCATC---------TTGGCCGGAATTGTTCATAAAAAGAC--A-TTTTTTTC--ACCAGAACTATGATTCTTCTGTTT------AGTCATATGCTCAGCATAGAGAAGCTG s panTro5.chr17 16225353 202 + 83181570 TTTTCTATTTACATTG-----AATACAAACATATTTCTAA--ATGCCCATCTTACACC----TTTTAAATATCTCCTTTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGAGGACCCATC---------TTGGCCGGAATTGTTCATAAAAAGAT--A-TTTTTTTC--ACCAGAACTATGATTCTTCTGTTTTAGTTTAGTCATATGCTCAGCATAGAGAAGCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132706 202 + 83442489 TTTTCTATTTACATTG-----AATACAAACATATTTCTAA--ATGCCCATCTTACACC----TTTTAAATATCTCCTTTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGAGGACCCATC---------TTGGCCGGAATTGTTCATAAAAAGAT--A-TTTTTTTC--ACCAGAACTATGATTCTTCTGTTTTAGTTTAGTCATATGCTCAGCATAGAGAAGCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3967825 202 + 4267968 TTTTCTATTTACATTG-----AATACAAACATATTTCTAA--ATGCCCATCTTACACC----TTCTAAATATCTCCTTTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGAGGACCCATC---------TTGGCCAGAATTGTTCATAAAAAGAC--A-TTTTTTTC--ACCAGAACTATGATTCTTCTGTTTTAGTTTAGTCATATGCTCAGCATAGAGAAGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947540 203 - 2193130 TTTTCTATTTACACTG-----AATACGAACATATTTCTAA--ATGTCCATCTTACACC----TTCTAAATATCTCCTTTCCTTAACT---TCTGTCTATTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAAGAC--ATTTTTTTTC--ACCAGAACTATGCTTCTTCTATTTTAGTTTAGTCATATGCTCAGCATAGAGAAGCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30020839 201 - 77216781 TTTTCTATTTACATTG-----AATACAAACATATTTCCAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--A-TTTTTTTC--ACCAGAACTACGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933435 201 - 80997621 TTTTCTATTTACATTG-----AATACAAACATATTTCCAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--A-TTTTTTTC--ACCAGAACTACGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989704 201 + 10377808 TTTTCTATTTACATTG-----AATACAAACATATTTCCAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--A-TTTTTTTC--ACCAGAACTATGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877152 201 - 8458610 TTTTCTATTTACATTG-----AACACAAACATATTTCTAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTACTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--A-TTTTTTTC--ACCAGAACTATGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64832867 202 + 75148670 TTTTCTATTTACATTG-----AATACAAACATATTTCTAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--ATTTTTTTTC--ACCAGAACTATGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056329 202 + 4244037 TTTTCTATTTACATTG-----AACACAAACATATTTCTAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTACTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--ATTTTTTTTC--ACCAGAAGTATGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084202 201 + 4569836 TTTTCTATTCACATTG-----AATACAAACATGATTCTAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCTTAACT---TCTGGCTATTTCTCATACATAT--TGGGGACCCATC---------TTGGCCTGAATTGTTCATAAAAA-AC--A-TTTTTTTC--ACCAGAACTATGATTCTTTTGTTTTAGTTTAGTCTTATGCTCAGCATAGAGAAGCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053486 200 - 159171411 TTTCCCACCCACCTTG-----AATACAAGCATATTTCTAA--ATGTCCATCTTACACC----TTCTAAATATCTCATCTCCATGACT---TCTGGCTATTTATCATACACAC--TGAGGACCCATC---------TTGGCCGGAATTGTTCATAAAAAGAC--T-TTTTTTTG--GTCAGAAC--TGATTCTTCTATTTTAGTTTAGTCTTATGCTCAGCACAGAGAAGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1775871 204 + 3513951 TTTCCTATTCACCTTG-----AATACAAGCATATTTCTAA--ATGTCCATCTTACACT----TTCTAAATATCTCATCTCCATAGCT---TCTGGCTATTTATCATACATAC--TGGGGACCCATC---------TTGGCCAGAATTGTTCACAAAAAGAT--T-TTTTTTTTTCATCAGAACTATGATTCTTCTGTTTTAGTTTAGTCTTATGCTCAGCACAGAGAAGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824730 206 + 1920343 TTTCCTATTCACCTTG-----AATACAAGCATATTTCTAA--ATGTCCATCTTCCACC----TTCTAAATATCTCATCTCCATAACT---TCTGGCTATTTATCATACATAC--TGGGGACCCATC---------TTGGCCAGAATTGTTCACAAAAAGACATT-TTTTCTTTTCATCAGAACTATGATTCTTCTGTTTTAGCTTAGGCTTATGCTCAGCACAGAGAAGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936595 202 - 7032639 TTTCCTATTCACCTTG-----AATACAAGCATATTTCTAA--ATGTCCATCCTACACC----TTCTAAGTATCTCATCTCCATAACT---TCTGCCTATTTATCATACACAT--TGGGGACCTATC---------TTGGTCAGAATTGTTCACAAAAAGAC--A-TTTTTTTC--ATCAGAACTATGATTCTTCTGTTTCAGTTTAGTCTTATGCTCAGCACAGAGAAGCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35860675 198 - 65901067 TTTTCTAATTACATTG-----AATACAAACATATTTCCAA--CTGTCCATCTCACACC----TTCTAAATATCTCATATTCTTACCT---TGTGG-TATTTCTCTTATATTT--TGGGGACCCATA---------GTGGCCTGAATTTTTCATAAATATAT--A-ATCCTTT---ACCAGAACTATGACTTCTCTGTTTCAGTTTAGTCCTGCGCTG--CATAGAGAAGCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2945068 196 + 8555354 TTTTCTAATTACATTG-----AATACAAACATATTTCCAA--ATGTCCATCTCACATC----TTCTAAATATCTCATCTCCTTACCT---TCCGGCTATTTCTTACATATTT--TGGGGACCCATA---------GTAGCCTGAGTTTTCCATAAAAATAT--A-ATCCTTT---ACCAGAACTATGA---CTCTGTTTCAGTTTAGTCCTGTGCCG--CATAGAGAAGCCG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22743046 209 + 28711273 TTTTCTAATCACATTGTATTACATACAATCCTATTTCCAA--ATGTCCATCTCACACTTAAATACACATTATTTCATCTCCCCACTT---TCTGGCTATTTCTCTTATATTT--TGAGAACCCATC---------ATGTCCTGAATCTT-CATAAAAAGAC--A-ATCCTTT---GCCAGCAGTATGATTCTTCTGGCTCAGGTTATTCCTATGCCTACCATGGAGAAACCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22028660 198 - 122082543 TTTTAAAACAATATTA-----AGTACAAATATATTTCCAA--GTAT-CATCTTCTACC----TTTAAAATACCTCATTTCCTCACTTTTGTCTGTATTTTTCTTGTTTACTT--TTTGGACCAAATTAGGGCTGATTGGCCTGACTTATCCATAAACTGGG--A-ATGTCTT---ATCAT--CTTTGATTCTTCTGTTTCAACTTGGTTCTGTTCTAAA------------G i mm10.chr11 I 7 C 0 s canFam3.chr9 21361746 193 + 61074082 TTTCCTAATTACATTT-----GATACAAACATATTTCCAGATATGTCCATCTCACACC----TCTTAAATATCTCAACTCCTTAACT---TCTTGTTGTTTCTCAGGTATTT-GTGGGGAC--------------T------GAATTGCTCATAAAAATAT--A-ATCCTCT---ACCAGAACTAGGATTCTTCTGTTTCAATGTATTCCTGTGCCCAGCTTGGAGAAGCTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 341110 202 - 852752 ATTTTTAATTACATC------AGTATTGGTACTTCTCCAC--GTGTATATCTTATACC----TTTTAAACATCTCACCTCTCTAACT---TCTGGTTACTTCTCATATATTTTTTTGGGAATCATA---------TTGGTCTGAATTGGTCATAAAAAGAT--A-ATCCTTC---ATCAGAACTAGGATTCTTTTGTTTCATGTTAGCCTCCTGCCCAGTACTAGCTAGGTA i dasNov3.JH570468 C 0 I 1221 a score=29484272.000000 s hg38.chr17_GL383564v2_alt 31678 1904 + 133151 TCTAATCAATGTG-TTCTGAATTAAATTGAACTGGATAATG-AATGTGGGTTTGATAGCCCATTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACCAAGAG----AATACATGAATTCTACCCCTCGCCTGTGTGAGGTCATGGGGATCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCATTGAGATCTTGAAAACACTGCAAGAAAGAGGCTAGATTCACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----TAGTCTGTCTGTGGTCCCCATCTTGAATTCTTGTGCCATTTCACATTCTGCAGGGCAACCAGCAGGTAGAAAAAGGAATATCTAGGAGTAACCAGAAGATAACAGGGGTTTCTTGTTCTCTCCTACATCTT-CTGTGTGGCT-----------GCTGACTGGCCATGACCTGCAGCCAGTGCAGGACTGACTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTTCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCGCTCCTTTTAGACTTTACACTGCCTGTGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA----------------TCTCAAGCTTGATCACAGAGGTGATGCT-TCGGTCTGGACAGCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGTAGTCCT-GTGTCCATAGATCTTTTATGAGTCAACTCCATTTACGCCTTGCAGGACACTCAGCACGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGTCTTGGCT-TCTTCTCAGCTTTGCATTTTCCAGGTTAGCCCCTCGGAAGCTGGGCTAACTTTGTCTGATTTG-------CTGCATGATGCTGAGGATT----CCTCCCAACTTTTTTCCTTG----TCTCTTCTT-TTTCTTGTTGTCT------------------CTCCT-----G--------GTCTCCGTCTCTTTCCATTTCTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTCTCTTGTCAATACAATCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCAGCCAATCAGTAGATAGGAATCAAGAGCTTGGAGAATACTGCTGGCATTTAGTTTGGGCTTAGGTTAAAGCCTGCCTGACTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTATGCTGTCATCTA--CAAGCTAG--TGCTCATCAATCAGATGCACGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCACCTAGCCTTGCGTCCTTCCTCTGGAGAGTCTCAGGAGTAACAGTCTGTAGACCCGCCTATTTCTCCCCCTTTAATTGTCTTGTAAGG--AAACGA--AAGTATTGATTTTATT------ATAAGTCTAGATCTTCTTTGTAGTGCTGTGGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAATTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGC--------------------------------------------AACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAATGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCTGG-TGCCCAGGTCCTTGGATTT-AATTACACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGT s panTro5.chr17 16225555 1946 + 83181570 TCTAATCAATGTG-TTCTGAATTAAATTGAACTGGATAATG-ACTGTGCATTTGATAGCCCATTGACTGCTCAATTTCTCCTT-GAATAAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACCAAGAG----AATACATGAATTCTACCCCTCGCCTGTGTGAGGTCATGGGGATCTTAC-AACCCTTGGG---------TCTCATTTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCATTGAGATCTTGAAAACACTGCAAGAAAGAGGCTAGATTCACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----TAGTCTGTCTGTGGTCCCCATCCTGAATTCTTGTGCCATTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATATCTAGGAGTAACCAGAAGATAACAGGGGTTTCTTGTTCTCTCCTACATCTT-CTGTGTGGCT-----------CCCGACTGGTCATGACCTGCAGCCAGTGCAGGACTGACACTTCCTGCTGCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCGCTCCTTTTAGACTTTACACTGCCTGTGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTCAAGCTGGATCACAGAGGTGACGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGTAGTCCT-GTGTCCATAGATCTTTTATGAGTCAACTCCATTTACGCCTTGCAGGACACTCAGCACGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGTCTTGGCT-TCTTCTCAGCTTTGCATTTTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------CTGCATGATTCTGAGGATT----CCTCCCAACTTTTTTCCTTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----T--------GTCTCCATCTCTTTCCATTTCTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATACAATCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCAGCCAATCAGTAGATAGGAACCAAGAGCTTGGAGAATACTGCTGGCATTTAGTTTGGGCTTAGGTTAAAGCCTGCCTGACTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGCGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--CAAGCTAG--TGCTCATCAATCAGATGCACGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCACCTAGCCTTGCGTTCTTCCTCTGGAGAGTCTCAGGAGTAACAGTCTGTAGACCCACCTATTTCTCCCCCTTTAATTGTCTTGCAAGG--AAACAA--AAGTATTGATTTTATT------ATAAGTCTAGATCTTCTTTGTAGTGCTGTGGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-AT--GATAATGGTCTTGG--AGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAATTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCTGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAATGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCTGG-TGCCCAGGTCCTTGGATTT-AATTTCACA-GCCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16132908 1945 + 83442489 TCTAATCAATGTG-TTCTGAATTAAATTGAACTGGATAATG-ACTGTGCATTTGATAGCCCATTGACTGCTCAATTTCTCCTT-GAATAAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACCAAGAG----AATACATGAATTCTACCCCTCGCCTGTGTGAGGTCATGGGGATCTTAC-AACCCTTGGG---------TCTCATTTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCATTGAGATCTTGAAAACACTGCAAGAAAGAGGCTAGATTCACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----TAGTCTGTCTGTGGTCCCCATCCTGAATTCTTGTGCCATTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATATCTAGGAGTAACCAGAAGATAACAGGGGTTTCTTGTTCTCTCCTACATCTT-CTGTGTGGCT-----------CCCGACTGGTCATGACCTGCAGCCAGTGCAGGACTGACACTTCCTGCTGCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCGCTCCTTTTAGACTTTACACTGCCTGTGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTCAAGCTGGATCACAGAGGTGACGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGTAGTCCT-GTGTCCATAGATCTTTTATGAGTCAACTCCATTTACGCCTTGCAGGACACTCAGCACGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGTCTTGGCT-TCTTCTCAGCTTTGCATTTTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------CTGCATGATTCTGAGGATT----CCTCCCAAC-TTTTTCCTTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----T--------GTCTCCATCTCTTTCCATTTCTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATACAATCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCAGCCAATCAGTAGATAGGAACCAAGAGCTTGGAGAATACTGCTGGCATTTAGTTTGGGCTTAGGTTAAAGCCTGCCTGACTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--CAAGCTAG--TGCTCATCAATCAGATGCACGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCACCTAGCCTTGCGTTCTTCCTCTGGAGAGTCTCAGGAGTAACAGTCTGTAGACCCACCTATTTCTCCCCCTTTAATTGTCTTGCAAGG--AAACAA--AAGTATTGATTTTATT------ATAAGTCTAGATCTTCTTTGTAGTGCTGTGGGGCTTT-TCATCTGAATAGCATTATAATAAGCA-AT--GATAATGGTCTTGG--AGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAATTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCTGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAATGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCTGG-TGCCCAGGTCCTTGGATTT-AATTTCACA-GCCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3968027 1945 + 4267968 TCTAATCAATGTG-TTCTGAATTAAATTGAACTGGATAATG-AATGTGGGTTTGATAGCCCATTGACTGCTGAATTTCTCCTC-GAAT-AAAA-AAATTTGCAAATATTCCA---ACTAGGAAACCAAGAG----AATACATGAATTCTACCCCTCGCCTGTGTGAGGTCATGGGGACCTTACAAACCCTGGGG---------TCTCATTTTCCCCACTAGTTCAAGGAGCAAA----------TTCACTCAAGCCCATTGAGATCTTGAAAACACTGCAAGAAAGAGGCTAGATTCACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----TAGTCTGTCTGTGGTCCCCATCCTGAATTCTTGTGCCATTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATATCTAGGAGTAACCAGAAGATAACAGGGGTTTCTTGTTCTCTCCTACATCTT-CTGTGTGGCT-----------GATGACTGGCCATGACCTGCAGCCAGTGCAGGACTGACTCTTCCTGCTGCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCGCTCCTTTTAGACTTTACACTGCCTGTGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTCAAGCTGGATCACAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGGGGCCTCAGAAGCTGTAGTCCT-GTGTCCATAGATCTTTTATGAGTCAACTCCATTTACGCCTTGCAGGACACTCAGCACGGTGGGCCACTCCTCATTCTATTGGCTTATTTTGTCTTGGCT-TCTTCTCAGCTTTGCATTTTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------CTGCATGATTCTGAGGATT----CCTCCCAACTTTTTTCCTTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----G--------GTCTCCATCTCTTTCCATTTCTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATACAATCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCAGCCAATCAGTAGATAGGAACCAAGAGCTTGGAGAATACTGCTGGCATTTAGTTTGGGCTTAGGTTAAAGCCTCCCTGACTCGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTTCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--CAAGCTAG--TGCTCATCAATCAGATGCACGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCACCTAGCCTTGTGTCCTTCCTCTGGAGAGTCTCAGGAGTAACAGTCTGTAGACCCGCCTATTTCTCCCCCTTTAATTGTCTTGCAAGG--AAACAA--AAGTATTGATTTTATT------ATAAGTCTAGA---TCTTTGAAGTGCTGTGGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTGGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCTGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAATGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTTCTGG-TGCCCAGGTCCTTGGATTT-AATTACACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1947743 1947 - 2193130 TCTAATAAATGTT-TTCTGAATTAAATTGAACTAGATAATG-AATATGGGTTTGATAGTCCATTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACCAAGAG----AATACATGAATTCTACCCCTCGCCTGTGTGAGGTCATGGGGACCTTAT-AACCCTGGGG---------TCCCA-TTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCACTGAGATCTTGAAAACACTGCAAGAAAGAGGCTAGATTCACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----TAGTCTGTCTGTGGTCCCCATCCTGAATTCTTGTGCCATTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATATCTAGGAGTAACCAGAAGATAACAGGGGTTGCTTGTTCTCTCCTACATCTT-CTGTGTGGCT-----------GCTGACTGGCCATGACCTGCAGCCAGTGCAGGACTGACTCTCCCTGCTGCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCACTCCTTTTAGACTTTACACTGCCTGTGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTCAAGCTGGATCACAGAGGTGATGCT-TTGGTCTGGACAACTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGTAGTCCC-GTGTCCGCAGATCTTTTATGAGTCAACTCCATTTATGCCTTGTGGGACACTCAGCACGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGTCTTGGCT-TCTTCTCAGCTTTGCATTTTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------CTGCATGATTCTGAGGATT----CCTCCCAACTTTCTTCCCTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----T--------GTCTCCATCTCTTTCCATTTCTCTGATC-CTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCCAATCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCTATAAAATCAGTAGATAGGACCCAAGAGCTTGGGGAATACTGCTGGCATTTAGTTTGGGCTTAGGTTAAAGCCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGCGCTGTCATCTA--CAAGCTAG--TGCTCATCAATCAGATGCACGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCACCTAGCCTTGCGTCCTTCCTCTGGAGAGTCTC-GGGGTAACAGCCTGTAGACCTGCCTATTTCTCCCCCTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATTGATTTTATT------ATAAGTCTAGATCTTCTTTGTAGTGCTGTAGGGCTTT-TCATCTGAATAGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCGACATGAGTACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGAGGTGCTGCCTCCTGAGATGCAGGTGGTA-CCTGATGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCGAATGAC-TCT-AGCTTGCCTTTCAAAACCCTCTTGCTCATGCCGTA-C---TCAGCATTTTCTTTCCCAG-TGCCCAGGTCCTTGGATTT-AATTACACA-ACCACAGAGATCTCCTTTGGTACCTTTAGACCTTTGGTTCCTAAAGCAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30021040 1952 - 77216781 TGTAATAAATGTG-TTCTGAATTAAATTGAACTAAATAATG-AATGTGGGTTTGATAGCCCACTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAACTATTCCA---ACTAGGAAACTAAGAG----AATACATGAATTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCACTGAGATCTTAGAAACACTGCAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----CAGTCTCTCTGTGGTCCCCATCCTGAATTCTTGTGCCACTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCTTGTTCTCTCCTGCATCTT-CTATGTGGCT-----------GTTGATGGGCCATGACCTGCAGCCAGTGCAGGACTGACTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTTGCTCCTTTTAGACCTTACACTGCCTGGGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTTAAGCTGGATCACAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGCAGTCCC-GTGTCCATAGATCTTT--TGAGTCAACTCGATTTATGCCTTGCAGGACACTCAGCATGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATTCTTCCCTCCTAACTTTCTTCCTTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----C--------GTCTCCATCTCTTTCCATTTTTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCCATTCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAGCCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTCATCAATCAGATGCATGAGCCTTTCCATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGCGTCCTTCCTCTGGAAAGTCTCAAGGGTAACAGCCTGTAGACCCGCCTATTTCTCCACGTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGGTCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACCCAAGCAGAGTGTGACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAGTGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCCGG-TGCACAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27933636 1952 - 80997621 TGTAATAAATGTG-TTCTGAATTAAATTGAACTAAATAATG-AATGTGGGTTTGATAGCCCACTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAACTATTCCA---ACTAGGAAACTAAGAG----AATACATGAATTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCACTGAGATCTTAGAAACACTGCAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----CAGTCTCTCTGTGGTCCCCATCCTGAATTCTTGTGCCACTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAGTCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCTTGTTCTCTCCTGCATCTT-CTATGTGGCT-----------GTTGACGAGCCATGACCTGCAGCCAGTGCAGGACTGACTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTTGCTCCTTTTAGACCTTACACTGCCTGGGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTTAAGCTGGATCACAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGCAGTCCC-GTGTCCATAGATCTTT--TGAGTCAACTCGATTTATGCCTTGCAGGACACTCAGCATGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATTCTTCCCTCCTAACTTTCTTCCTTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----C--------GTCTCCATCTCTTTCCATTTTTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCCATTCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAGCCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTCATCAATCAGATGCATGAGCCTTTCCATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGCGTCCTTCCTCTGGAAAGTCTCAAGGGTAACAGCCTGTAGACCCGCCTATTTCTCCACGTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGGTCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACCCAAGCAGAGTGTGACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAGTGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCCGG-TGCACAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1989905 1953 + 10377808 TGTAATAAATGTG-TTCTGAATTAAATTGAAGTAAATAATG-AATGTGGGTTTGATAGCCCACTGACTGCTCAATTTCTCCTT-GAATGAAAA-CAATTTGCAACTATTCCA---ACTAGGAAACTAAGAG----AATACATGAATTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCACTGAGATCTTAGAAACACTGCAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----CAGTCTCTCTGTGGTCCCCATCCTGAATTCTTGTGCCACTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCTTGTTCTCTCCTGCATCTT-CTATGTGGCT-----------GTTGACGGGCCATGACCTGCAGCCAGTGCAGGACTGACTCtcactgcttcatttctcctttcttctc-----------------------------------------ttcccactcct--------------------------tattccttcaGGAACAGGCAGTGTTGCTCCTTTTAGACCTTACACTGCCTGGGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTTAAGCTGGATCACAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGCAGTCCC-GTGTCCATAGATCTTT--TGAGTCAACTCGATTTATGCCTTGCAGGACACTCAGCATGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATtcttccctcctaactttcttccttg----tctcttctt-tttcttgttatct------------------ctcct-----c--------gtctccatctctttccatttttctgatctctCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCCATTCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAGCCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTCATCAATCAGATGCATGAGCCTTTCCATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGCGTCCTTCCTCTGTAAAGTCTCAAGGGTAACAGCCTGTAGACCCGCCTATTTCTCCACGTTTAATTGTGTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGGTCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACCCAAGCAGAGTGTGACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAACCCCCAAGTGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCCGG-TGCACAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1877353 1952 - 8458610 TGTAATAAATGTG-TTCTGAATTAAATTGAACTAAATAATG-AATGTGGGTTTGATAGCCCACTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACTAAGAG----AATACATGAATTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCACA----------TTCACTCAAGCCCACTGAGATCTTAGAAACACTACAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----CAGTCTCTCTGTGGTCCCCATCCTGAATTCTTGTGCCACTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCCTGTTCTCTTCTGCATCTT-CTGTGTGGCT-----------GCCGACTGGCCATGACCTGCAGCCAGTGCAGGACTGACTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCGCTCCTTTTAGACCTTACACTGCCTGGGTGTAGATGGCAGTATATTTCTCAGCCACAAATAA---------------ATCTTAAGCTGGATCGCAGAGGTGATGCT-TTGGTCTGGACATCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGCAGTCCT-GTGTCCATAGATCTTT--TGAGTCAACTCGATTTATGCCTTGCAGGACACTCAGCATGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATTCTTCCCTCCCAACTTTCTTCCTTG----TCTCTTCTT-TTTCTTGTTATCT------------------CTCCT-----C--------GTTTCCATCTCTTTCCATTTTTCTGATCTCTCTGCATTGTACAAAAATTC----TATATTTGCTTTCTTGTCAATCCATTCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAGCCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTCATCAATCAGATGCATGAGCCTTTCCATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGCGTCCTTCCTCTGGAAAGTCTCAAGGGTAACAGCCTGTAGACCCGCCTATTTCTCCATGTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGGCCCAAGCAGAGTGTGACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTACGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAGTGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCTGTG-C---TCAGCATTTTCTTTCCCGG-TGCACAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGATTCTTAAAGCAGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64833069 1948 + 75148670 TGTAATAAATGTG-TTCTGAATTAAATTG----AAATAATG-AATGTGGGTTTGACAGCCCACTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAACTATTCCA---ACTAGGAAACTAAGAG----AATACATGAATTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCAAA----------TTTACTCAAGCCCACTGAGATCTTAGAAACACTGCAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCGGA----CAGTCTCTCTGTGGTCCCCATCCTGAATTCTTGTGCCACTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCTTGTTCTCTCCTGCATCTT-CTGTGTGGCT-----------GCCGACTGGCCATGACCTGCAGCCAGTGCAGGACTGATTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTTGCTCCTTTTAGACCTTACACTGCCGGGGCGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTTAAGCTGGATCGCAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGACTCAGAAGCTGCAGTCCC-GTGTCCATAGATCTTT--TGAGTCAACTCGATTTATGCCTTGCAGGACACTCAGCATGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATTCTTCCCTCCCAActttcttccttg----tctcttctt-tttcttgttatct------------------ctcct-----c--------gtctccatctctttccatttttctgatctctCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCTATTCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGGCTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAACCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTCATCAATCAGATGCATGAGCCTTTCCATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGTGTCCTTCCTCTGGAAAGTCTCAAGGGTAACAGCCTGTAGACCCGCCTATTTCTCCACGTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACCCAAGCAGAGTGTGACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAATGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCCGG-TGCACAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2056531 1952 + 4244037 TGTAATAAATGTG-TTCTGAATTAAATTGAACTAAATAATG-AATGTGGGTTTGATAGCCCACTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACTAAGAG----AATACATGAATTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCACA----------TTCACTCAAGCCCACTGAGATCTTAGAAACACTGTAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----CAGTCTCTCTGTGGTCCCCATTCTGAATTCTTGTGCCACTTCCCATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCTTGTTCTCTCCTGCATCTT-CCGTGTGGCT-----------GCCGACTGGCCATGACCTGCAGCCAGTGCAGGACTAACTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCGCTCCTTTTAGACCTTACACTGCCTGGGTGTAGATGGCAGTATATTTCTCAGCCACAAACAA---------------ATCTTAAGCTGGATCACAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGCAGTCCT-GTGTCCACAGATCTTT--TGAGTCAACTCGATTTATGCCTTGCAGGACAGTCAGCATGGTGGGCCACTCCTCAGTCTATTGGTTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTGGGTTAACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATTCTTCCCTCCCAActttcttccttg----tctcttctt-tttcttgttatct------------------ctcct-----c--------gtctccatctctttccatttttctgatctctCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCCATTCCTTGAATCTTCTCATACTTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAGCCTCCCTGGCTGGGGAAGCAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACGAGAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTCATCAATCAGATGCATGAGCCTTTCTATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGCGTCCTTCCTCTGGAAAGTCTCAAGGGTAACAGCCTGTAGACCCGCCTATTTCTCCATGTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACCCAAGCAGAGTGTGACATGAATACCATCATGAAAGCTCAATGG-GAGAAGCACTCCAGTAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTATAATTACGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAGTGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCCGG-TGCGCAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGATTCTTAAAGCAGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2084403 1952 + 4569836 TCTAATAAATGTG-TTCTGAATTAAATTGAAGTAAATAATG-AATGTGGGTTTGATAGCCCATTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAATTTGCAAATATTCCA---ACTAGGAAACTAAGAG----AATACAAGAACTCTATCCCTTGCCTGTGTGAGGTCATGGGGACCTTAC-AACCCTGGGG---------TCCCATTTTTCCCACTAATTCAAGGAGCAAA----------TTCACTCAAGCCCGCTGAGATCTTAGAAACACTGCAAGAAAGAAGCTAGATTTACAAGAGATGGCAGCATTGTGTTTACTCACCAGC----CAGTCTCTCTGTGGTCCCCATCCTGAATTCTTGTGCCATTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAAAGGAATCTCTAGGAGTAACCAGAAGATAACAGGGGTCGCTTGTTCTCTCCTGCATCTT-CTGTGTGGCT-----------GCCAACTGGCCATGACCTGCAGCCAGTGCAGGACTGCCTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------TTCCCACTCCT--------------------------TATTCCTTCAGGAACAGGCAGTGTCTCTCCTTTTAGACTTTACACTGCCTGGATGTAGATGGCAGTATACTTCTCAGCCACAAACAA---------------ATCTTAAGCTGGATTGCAGAGGTGATGCT-TTGGTCTGGACACCTTGGAACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGCAGTCCC-GTGTCCATAGATCTTT--TGAGTCAACTCAATTTATGCCTTGTGGGACACTCAGCACGGTGGGCCACTCCTCAGTCTATTGGCTTATTTTGCCTTGGCT-TCTTCTCAGCTTTGCATTCTCCAGGTTAGCCCCTTGGAAGCTCGGCTGACTTTGTCTGATTTG-------TTGCATGATTCTGAAGATTCTTCCCTCTCAACTTTCTTCCTTG----TCTCTTCTT-TTTCTTGTTCTCT------------------CTCCT-----C--------GTCTCCATCTCTTTCCATTTTTCTGATCTCTCTGCATTGTACAAAAATTC----TATGTTTGCTTTCTTGTCAATCCATTCCTTGAATCTTCTCATACGTAGAGCCTAAACACTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCGGCCAGTCAGTAGATAGGACCCAAGAGCTTGGAGAAAACTGCTGGCATTTAGTCTGGGCTTAGGTTAAAGTCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGCTTGCTGGAAAGCCAGTGCTT-GGAGCAGGCTGACAAGAGTTAGGAAGCAGAAAGCCTGTGCTGTCATCTA--TAAGCTAG--TGCTTATCAATCAGATGCATGAACCTTTCCATTCACCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAGACAGCTGCCGCCTAGCCTTGCGTCCTTCCTCTGGAGATTCTCAGGGGTAGCAGCCTGTAGACCCGCCTATTTCTCCACGTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATAGATTTTATT------ATAAGTCTAGATCTTCCTTGTAGTGCTGTGGAGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACCCAAGCAGAGTGTGACATGAATACCATCATGAAAGTTCAATGG-GAGAAGCACTCCAATAAGTTGTCAATAAAACGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATGGGGGTGCTGCCTCCAGAGATGCAGGTGGTA-CCTGACGGTGCCTGTAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTAGTGCCTTCCTTCACCTCCCAAAGCAA-CCCCAAATGAC-TCC-AGCTTGCCTTGCAAAACCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCTGG-TGCTCAGGTCCTTGGATTT-AATTATACA-ACCACAGAGACCTCCTTTGGTACCTTTAGACCTTTGGTTCTTAAAGCAGGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46053686 1905 - 159171411 CCTAACAAATGTG-TTCTGAAGTAAACTGAACTAAATAATG-AATGTGGGTTTCATTGTCCATTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAA-TTGCAAATATTCCA---ACTAGGAAACCAAGAGAATAAATAAATGAAGTCTATCCCTCACCTGTGTGAGGTCACGGGGATCTTAC-AACTCTGGGG---------TCCCATTTTCCCCACTAATTTGGAGAGTGAA----------TCCACTCCAGCCCATTGAGATCTTGAAAACACT---AGAAAGAGGCTAGATTTACAAGAGGTGGCAGCACTGTGTTTACTCACCAGCCAGTCAGTCTGTCTGCGGTCCCCATCCCGAATGCTTGTGCCAGTTCACATTCTGCAGGGCAACCGGCAGGGAGAAAA------------------------------AGGGGTCCCCTGTTCTCTCCTGTATCTT-CCGTGTGGCTGCCGTCTGGCCGCCGACTGGCCATGACCTGAAGCCAGCACAGGACTGACTCTCCCTGCTTCATTTCTCCTTTCTTCTC-----------------------------------------CCCACACAACT--------------------------TATTCCTTCAGGAA-AGGCAGTGTCGCTCCTTTTAGACTTCACAATG-CTATGTGTAGATGGGAATATATTTCTCAGCCACAAAGAA---------------ATCTCAAGCTGGATCACAGAGGTGATGCT-TCAGTCTGGGCACCTTGGCACAATGTCACTTCTTTCAGAGGCCTCAGAAGCTGTAGTCCT-GTGTCCATAGATTTTTTATGAGTCATCTCCATTTCTGCCTCGCAGGACCCTCAGCAGGGTGGGCCACTCTCCAGTCTCTTTGCTTA----GTCTTGGCT-TCTTCTCAGCTTTGCCTTCTCCAGGTTAGCCCCTTGGAAGCTGCACTAAC--TGTC-AATTTG-------CTGCATGATTCTGAGGATA----CCTCCCAATTTTCTTCCTTG----TGTTTTCTT-TTTCTTGTTATCT------------------CTCCT-----C--------ATCTCCATCTCTTTCCATTTCTCTGATCTCTCTGCGTTGTACAAAAATTC----TATTTTTTCTTTCTTGCCAACCCAATCGTCGAGTCTTCTCATACTTAGAA--------CTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCAGTCAATCAGTAGATCGGACCCAAGAGCTTGGAGAATACTGCTGGCATTTAGTTTGGGCTTGGGTTAAAGCCTCCCTGGCTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTGATTGTTGCAAAGCCAGTGCTT-GGAGCAGGCTGAC--GAGTTAGGAAGCAGAAGGCCTGCACTGTCATCTA--CAAGCGAG--TGCTCATCAATCAGGTGCATGAGCCTTTCCATTCATCTCAAGCCCAGATGAA--GAGACAGAAGCTCCC--CACAG------GACGCCTAGCCTTGCGTCCTTCCTCTGGAGAGTCTCAGGGGTACCAGCCTCTAGACCTGCCTATTTCTCCCCCTTTAATTGTCTTGCAAGG--AAACAAAG---TATTGATTTTATT------ATAAGTCTAGGTCTTCTTTGTAGTGCTATAGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTGGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACTGTCATGAAAGCTCAATGG-GAGAAACACTCCAACAAGCTGTCCATAAAACGGCAGCTCTGGCTGGCAACCAAAGCCACGGTGGAGATTGGGGTGCTGCCTCCTGAGATGCAGGCGGTA-CCTGACGGTGCCTGTAATTACGCAACTTTTCTATATTCAGAATTTTGGCTG-CCTTGTCCTCAGATCTTCTGGTGCCTTCCTGCACCTCCCAAAGCAA-CCCTGAATGAC-TCC-ACTTTGCTTTGCAAAATCCCCTTGCTCAAGCTGTG-C---TCAGCATTTTCTTTCCTGG-TGCCCAGGCCCTTGGATTT-AATTACACA-ACCATAGACACCTCCTTTGGTATCTTCAGACCTCTGGTTCTTAAAGCAGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1776075 1889 + 3513951 CCTAACAAATGTG-TTCTGAAGTAAACTGAACTAAATAATG-AATGTGGGTTTCATTGTCCATTGACTGCTCAATTTCTCCTT-GAATGAAAA-AAGTTTGCAAATATTCCA---ACTAAGAAACCAAGAG----AATACGTGAAGTCTATCCCTCACCTGTGTGAGGTCATGGGGATCTTAC-AACCCTGGAG---------TCCTATTTTCCCCACTAATTCAGGGAGCGAA----------TCCACCCCAGCCCACTGAGATCTTGAAAACACTGCAAGAAAGAGGCTAGATTGACAAGAGGTGGCAGCATTGTGTTTACTCACCAGC----CAGTCTGTCTGCGGTCCCCATCCTGAATTCTTGCACCAGTTCACATTCT------------GCAGGGAGAAAA------------------------------AGCAGTCCCTTGTTCCCTCCTGTATCTT-CTGTGTGGCT-----------GCCGACTGGCCATGACCTGAAGCCAGCACAGGACCGACTCTCCCTGCTTCGTTTCTCCTTTCTTCTC-----------------------------------------TCCGCACAACT--------------------------TATTCCTTCAGGAA-AGGCAATGTCGCTCCTTTTAGACTTCACAATG-CTGTGTGTAGATGGGAGTATATTTCTCAGCCACAAAGAA---------------ATCTCAAGCTGGATCACAGAGGTGATGCT-TCAGTCTGGGCACCTTGGCACAACGTCACTTCTTTCAGAGGCCTCAGAAGCTGTAGTCCT-GTGTCCATAGATTTTGTATGAGTCATCTCCATTTCTGCCTCGCAGGACCCTCAGCAGGGTGGGCCACTCTCCAGTCTATTTGCTTATTTTGTCTTGGCT-TCTTCTCAGCGTTGCCTTCTCCAGTTTAGCCCCTTGGAAGCTGGGCTGACTTTGTC-AATTTG-------CTGCATGATTCTGAGGATA----CCTCCCAAGTTTCTTCCTTG----TCTTTTCTT-TCTCTTGTTGTCA------------------CTACT-----T--------GTCTCCATCTCTTTCCATTTCTCTGATCTCTCTGCGTTGTACAAAAATTC----TATTTTTTCTTTCTTCCCAACCCAATCCTTGAGTCTTCTCATACTGAGAG--------CTC-TTCTTTGACTACAGTCTCCAT-GGGGCTATGCCAGCCAATCAGTAGATCGGACCCAAGAGCTTGGAGAATACCGCTGGCATTTAGTTTGGGCTTGGGTTAAAGCCTCCCTGGCTGGGGAAGCAGAAAGGGCTGAG--GAAATAGCTGATTGCTGCAAAGCCAGTGCTT-GGAGCAGGCTGAC--TAGTTAGGAAGCAGAAGGCCTGTGTTGTCATCTA--CAAGCGAG--TAGTCGTCAATCAGGTGCATGAGCCTTTCCATTCGTCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAG------GACGCCTAGCCTTGCGTCCTTTCTCTGGAGAGTCTCAGGGGTACCAGCCTCTAGACCTGCCTATTTCTCCCCCTTTAATTGTCTTGCAAGG--AAACAAAGAACTATTGATTTTATT------ATAAGTCTAGGTCTTCTTTGTAGTGCTATAGGGCTTT-TCATCTGAATGGCATCATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACAGGAATACTGTCATGAAAGCTCATTGG-GAGAAACACTCCAACAAGCTGTCAATAAAATGGCAGCTCTGGCTAGCAGCCAAAGCCACAGTGGAGATTGGGGTGCTGCCTCTTGAGATGCAGATGGTA-TTTGATGGTGCCTATAATTATACAACTTTTATATATTCAGAACTTTGGCTA-CCACTTCCTCAGATCTTCTGGTGCCTTCCTTCACCTCCTAAAGCAA-CCCTAAATGAC-TCC-AGTTTGCCTTGCAAAATCCCCTTGCTCATGCTGTG-C---TCGGCATTTTCTTTCCCGG-TGCCCAGGCCCTTGGGTTT-AATTACACG-ATCATAGAGACCTCCTTTGCTATCTTCAGATGTCTGGTTCTTAAAGCAGGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1824936 1899 + 1920343 CCTAACAAATGTG-TTCTGAAGTAAACTGAACTAAATAATG-AATGTGGGTTTCATTGTCCATTGACTGCGCAATTTCTCCTT-GAATGAAAA-AAATCTGCAAATATTCCA---ACTAGGAAACCAAGAG----AATACATGAAGTCTATCCCTCACCTGTGTGAGGTCATGGGGATCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAGGGAGCGAA----------TCCACCCCAGCCCACTGAGATCTTGAAAACACTGTAAGAAAGAGGCTAGATTTACAAGAGGTGAAAGCACTGTGTTTACTCACCAGC----CAGTCTGTCTGCGATCCCCATCCTGAATTCTTGTGCCAGTTCACATTCTGCAGGGCAACCAGCAGGGAGAAAA------------------------------AGGGGTCCTCTGTTCTCTCCTGTATCTT-CTGTGTGGCT-----------GCCAACTGGCCATGACCTGAAGCCAGCACAGAACTGACTCTCCCTGCTTCGTTTCTCCTTTCCTCTC-----------------------------------------TCCGCACAACT--------------------------TATTCCTTCAGGAA-AGGCAGTGTCGCTCCTTTTAGACTTCACAATG-CTATGTGTAGATGGGAGTATATTTCTCAGCCACAAAGAA---------------ATCTCAGGCCGGATCACAGAGGTGATGCT-TCAGTCTGGACACCTTGGCACAGTGTCACTTCTTTCAGAGACCTAAGGAGCTGTAGACCT-GTGTCCACAGATTTTGTATGAGTCATCTTCATTTCTGCCTCGCAGGACCCTCAGCAGGGTGGGCCACTCTCCAGTCTATTTGCTTATTTTGTCTTGGCT-TCTTCTCAGCTTTGCCTTCTCCAGGTTAGCCCCTTGGAAGCTGGGCTAACTTTGTC-AATATG-------CTGCATGATTCTGAGGATA----CCTCCCAAGTTTCTTCCTTG----TCTTTTCTT-TTTCTTGTTATCT------------------CTCCT-----T--------GTCTCCATCTCTTTCCATTTCTCTGATCTCTCTGCATTGTACAAAAATTC----TATTTTTTCTTTCTTCCCAACCCAATCCTTGAGTCTTCTCATACTGAGAG--------TTC-TTCTTTGACTACAGTCTCCAT-AAGGCTATGCCAGCCAATCAGTAGCTCGGACCCAAGAGCTTGGAGAATACTGCTGGCATTTAGTTTGGGCTTGGGTTAAAGCCTCCTTGGCTGGGGAAGAAGAAAGGGCTGGG--GAAATAGCTGATTGCTGCAAAGCCAGTGCTT-GGAGCAGGCTGAC--TAGTTAGGAAGCAAAAGGCCTGCACTGTCATCTA--CAAGCGAG--TAGTCATCAATCAGGTGCATGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCC--CACAG------GACGCCTAGTCTTGCGTCCTTCCTCTGGAGAGTCTCAGGGGTACCAGCCTCTAGACTTGCCTGTTTCTCTCCCTTTAATTGTCTTGCAAGG--AAACAAAGAAGTATTGATTTTATT------ATAAGTC--GGTCTTCTTTGTAGTGCTATAGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GT--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACTGTCATGAAAGCTCAACGG-GAGAAACACTCCAACAAGTTGTGAATAAAGCGGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGATTGGGATGCTGCCCCTTGAGATGCAGGTGGTA-TTTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTGGTGCCTTCCTTCACCTTCCAAAGCAA-CCCTAAATGAC-TCC-AGTTTGCCTTGCAAAATCCCCTTGCTCATGCTGTG-C---TCGGCATTTTCTTTCCTGG-TGCCCAGGCCCTTGGATTT-AATTACACA-ACCATAGAGACCTCCTTTGGTATCTTCAGACCTCTGGTTCTTAAAGCAGGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6936797 1900 - 7032639 CCTAACAAATGTG-TTCTGAAGTAAACTGAACTAAATAATG-AATGTGGGTTTCATCGTCCATTGACTGCTCAATTTCTCCTT-GAATGAAAA-ACA-TTGCAAATATTCCA---ACTAGGAAACCAAGAG----AACACATGAAGTCTATCCCTCACCTGTGTGAGGTCATGGGGATCTTAC-AACCCTGGGG---------TCCCATTTTCCCCACTAATTCAAGGAGCGAA----------TCCACTCCAGCCCATTGAGATCCCAAAAACAGTGCAAGAAAGAATCTAGATTTACAAGAGGTGGCACCATTGTGTTTACTCACCAGC----CAGTCTGTCTGCGGTCCCCATCCTGAATTCTTGTGCCAGTTCACATTCTGCAGGGCAACCAGCAGGGGGAAAA------------------------------AGCGGTCCCTTGTTCTCTCCTGCATCTT-CTGTGTGGCT-----------GCCGACTGGCCATGACCTGAAGCCAGCACAGGACTGACTCTCCCTCCTTCGTTTCTCCTTTCTTCTC-----------------------------------------TCTGCACAACT--------------------------TATTCCTTCAGGAA-AGGCAGTGTCGCTCCTTTTAGATTTTACAAAG-CTGTGTGTAGATGGGAGTATATTTCTCAGCCACAAAGAA---------------ATCTCAAGCTGGATCGCAGAGGTGATGCT-TCGGTTTGGGCACCTTGGCACAATGTCACTTCTTTCAGAGGTCTCAGAAGCTGTAGTCCT-GTGTCCATAG-TTTTTTATGAGTCATCTCCATTTCTGCCTAGCAGGACCCTCAGCAGGGTGGGCCACTCTCCAGTCTATTTGCTTACTGTGTCTTGGCT-TCTTCTCAGCTTTGCCTTCTCCAGGTTAGCCCCTCAGAAGCTGGGCTAACTTTGTCTGATTTG-------CTGCAAGATTCTGAGGATA----CATCCCAAGcttcttccttg----tcttttctt-tttcttgttatct------------------ctcct-----t--------gtctccatctctttccatttctCTGATCTCTCTGCGTTGTACAAAAATTC----TATTTTTTCTTTCTTGCCAACCCAATCCCTGAGTCTTCTCATACTTAGAG--------CTC-TTCTTTGACTACAGTCTCCAT-GAGGCTATGCCAGCCAACCAGTAGATCGGACCCGAGAGCTTGGACAATGCTGCTGGCATTTAGTTTGGGCTTGGGTTAAAGCTTCCCTGGCTGGGGAAGAAGAAAGGACTGAG--GAAATAGCTGATTGCTGCAAAGCCAGTGCTT-GGAGCAGGCTGAC--GAGTTAGGAAGCAGAAGGCCTGTGCTGTCATCTA--CAAGCGAG--TGCTCATCAATCAGGTGCATGAGCCTTTCCATTCATCCCAAGCCCAGATGAAATGAGACAGAAGCTCCT--CACAG------GACGCCTAGCCTTGCGTCCTTCCTCTGGAGAGTCTCAGGGGTACCAGCCTCTAGACCTGCCTATTTCTCCCCCTTTAATTGTCTTGCACGG--AAACAAAGAAGTATTGATTTTATT------ATAAGTCTAGGTCTTCTTTGTAGTGCTATAGGGCTTT-TCATCTGAATGGCATTATAATAAGCA-GC--GATAATGGTCTTGGGGAGTGTAGATGAAGGACCTTTTATCTGAGACTCAAGCAGAGTGCAACATGAATACTGTCATGAAAGCTCAATGG-GAGAAACACTCCAACAAGCTGTCAATAAAATGGCAGCTCTGGCTGTCAGCCAAAGCCACAGTGGAGATTGGGGTGCTGCTTCTTGAGATGCAGGTGGTA-TCTGACGGTGCCTATAATTATGCAACTTTTATATATTCAGAACTTTGGCTA-CCTCTTCCTCAGATCTTCTGGTGCCTTCCTTCACCTCCCAAAGCAA-CCCTAAATGAC-TCC-AGTTTGCCTTGCAAAATCCCCTTGCTCATGCCGTG-C---TCAGCATTTTCTTTCCCGG-TGCCCAGGCCCTTGGATTT-AATTACACA-ACCATAGAGACCTCCTTTGGTATCTTCAGACCTCTGGTTCTTAAAGCAGGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35860873 1963 - 65901067 CCTAACAAATGAA-TTTTGAATTAAATTGAGCCCACTGAAG-AATGTTGGTTTGACAAGCCAGTGACTGCTCAATTTCTCTTT-CAATGAATA-AAATTTGCAAATATTCCA---ACGAGTAAATCAGGAG----AATACATGAAGTCTACTCCCGACCTGTGTGTGGTCACAGGGACCTTAC-AGTCCTGGGGGGGGGGGAATCCCATTTACTCCACGAATTCGAGAAGCAAA----------TTCACTCAAGCCTATTGAGATTTTGCAAACATTGCAAGAAAAAGGCTAGATTGACGAGGGGCAGCAGCATTGCGTTCACTCACCAGC----CAATCTGTCTGCAGGCTCCATCCTGAATCCTTGTGCCATTTTACCTTCTGCAGGGCAGCCAGCAGG--GAAAAAGGAATCT----------CCGGCAGGTAACAGGGATAACCTATTCTCTCCTGCATCTT-CCACGTGGCT-----------GCCGATTGGCCATGACCTGCAGCCAGTGTAGGTCTAACGATCCCTGCTCCCTTTTTCGTTTCTCCTC-----------------------------------------TCCACACTCCT--------------------------TATTCATCCAGGAACATGTAGTGTCGCTCCTTTTTGAGTCCACACTGCCTGGGTGTGGACAGCAGTGTGTTTCTCAGTCACAGACAA---------------ATCTCAGACTGGATCACAGAGGTGATGCT-CTGGTCTGGACACCTTGGAACAATGTCGCTTCTTTCGGAGGCCTCGGAAGCTGTGGCCCT-GAGTCTGCAGATCTTTCATGAGTCATCTCCATTCAAGTCTTGCAGGACACTCTGCAGGGTGGGCCACTCTTCTGCCTGTTGGTTCAGTTTGTGTTGGGT-ACTTCTCAGCTTTGCGTTGCCCAGGTTAGTCCATTTGAAGATGGGCTGGCTTTGTCTGATCCCTGCGGCCCTGCGTGGTTCTGAGGCTT----TCTTCCAGGTCTCCTCCTTG----CCTCCTCTT-CTTGCTTTTATCT------------------CGCCT-----T--------GTCTTCATCTCTTTCCATTTCTCTGATCTCTCTGCATTGCATAAAAATTCTTTTTTTTTTTGCTTTTTTGTCAATCAGATCCTTGAATCTTCTCATACTTAAAACCTAAATGTTC-TCCTCTCACCAAAGCCTCCAT-GGGGCTACGCCAGCCAATCAGTAGATAAGACCAAAGCACTTGGAGAGCACTGCAGGCAGGTAGTCTGTGCGCAGGGCGAAACCTCCCTGGGTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTCCTTGCTGGAAGGCCAGTGCTTCGGAGCAGGCTGACATGAGGTA-GCTGCAGGAGGCCTGTGCTGGTCCCTC--CAAGTGAG--CGCTCACCAGCTGGGTGCACGAGCCCTTCCCTCCATCCCAAGCCCGGGTGAAACGAGACAGAAGCCGACGATGCTGACAGCCGCTGCCTAGCC-CGCGTCCTTCCACTGGGCAGTCTCAGGAGTACCTGCCGCTGGGCCCACCTATTTCTCCCTCTTTAATTGCCTTGGAGGA--AAACAAAGAAATTTTGGTTTTATTATATTAATAAGTGTAGGGCTTCTTTGTAGTGCGGTGGGGCTTT-TCATCAGAATGGCATTCTAATAAGTG-GT--GATAATGGTCTTGCAGGGTGGAGAGGAGGGACCTTTTATCTGAGACTCACGCAGAGCGCCAGGAGAATACTAGCATGAAAGCTCAACGGAGGGAAGGACTCCAGGGAGTTGACAATAAAACTGCAGCTCTGGCCGGCAGCCAAAGCCACAGTGGAGCTGAGGGTGCTGCCTCCTGAGATGCAGGTGGTA-CCTGGCGGTGCCTGTAATTACGCAGCTTTTGTATA-TCAGAACTTTGGCCA-CCTCTTCTTTAGATCTTCCAGTGCCTTCCTTCACCTCCCAAGTCAA-CCCCAAATGAC-TGC-TGCTTGCCTCGC--GACCCCCCTGTTTATGCTGTG-C---TCAGCGTGTTCCTTCCCAG-TGCCTGGGTCTTTGGATTC-AATCACACG-ACCACAAAGCCCTCCTTTGGTCCCTTTATACCTTTGGTTCTTAAAGCAGGT i micMur3.chr16 C 0 I 626 s proCoq1.NW_012135969v1 2945264 1952 + 8555354 TCTAACAAATGAG-TTTTGAATTAAATTGAACAAAATAAAC-AATGTGGGTTTGATAATCCAATGACTGTTCAATTTCTCTTT-GAATGAATA-AAATTTGCAAATATTCCA---ATTAGGAAATCAAGAG-----ATACATGAAGTCTACTCCCAACCTGTGTGAGGTCATAGGGACCTTAC-TGTCCTGGGGGGGGT----TCCCATTTACTCCATGAATTCAAGAAGCAAA----------TTCACTCAAGCCTATTGAGATTTTGCAAACATTGCAAGAAAGAGGCTAGATTGACAAGGGACAGCAGCACTGTGTTCACTCACCAGC----TAGTCTGTCTGCAGGCTCCATCCTGAATCCTTGTGCCATTTTACCTTCTGCAGGGCAGCCAGCAGG--GACAAAGGAATCTCTGGGAGTAACCAGCAGATAACAGGGGTAACCTGTTCTCTCCTGTGTCTT-CCATGCGGCT-----------GCCGAATGGCCGTGACCTGCAGCCAGTATAGGACTGACGATCCCTGCTCCCTTTTTCCTTTCTCCTC-----------------------------------------TCCACACTCCT--------------------------TATTCGTCCAGGAACAGGTAGTGCTGCTCTTTTTTGAGTCCACACTGCCTGGCTGTGGACAGCAGTGTGTTTCTCAGTCACAGACAA---------------ATCTCAGACTGGATCACAGAGGTGATGCT-CCGGTCTGGACACCTTGGAACAATGTTGCTTCTTTTGGAGGCCTCGGAAGCCGTGGTCCT-GTGTCTGTAGACCTTTCATGAATCACCTCCATTTAAA--CTGCAGGACTCTCTGCAGGGTGGGCCACTCTTCTGCCCATCAGTTCAGTTTGTCTTGGGT-ACTTC------TTGCGTTGCCCAGGTTAGCCCATTTGAAGATGGGCTAGCTTTGTCTGATCCGTGTGGCCCTGTGTGGTTCTGAGGATT----TCTTCCAGGTTTCCTCCTTG----CCTCCTCTT-CTTGTTCTTATCT------------------CTCCT-----T--------GTCTTCATCTCGCTCCA-TTCTCTGATCTCTCTGTATTGCATGAAAATTC----TTTTTTTGCTTTTCTGTCGATCAGATCCTTGAATTTTCTCATACTTAAAACCTAAATGTTC-TCCTCTTACCAAAGCCTCCGT-GAGGCTATGCCAGCCGATCAGTAGATAAGACCAAAGAGCTTGGAGAACACTGCTGGCATGTAGTCTGTGCTCAGGGTGAAACCTCCCTGGGTGGGGAAGAAGAAAGGGCTGAG--GAAATAGCTCCCTGCTGGAAGGCCAGTGCTTTGGAGCAGGCTGACACGAGGTA-GCTGCAGGAGGCCTGTGCTGGTCCCTC--CAAGTGAG--CGCTCACCAGTTGGATGCACGAGCCCTTCCCTTCATCCCAAGCCCAGAGGAAACGAGACCGAAGCTGAC---GCTGACTGCTGCTGCCTAGCC-TGCGTCCTTCCGCTGGGCAGTCTCAGTGGTACCTGCCGCCGGACCCACCTATTTCTCCCCCTTTAATTGCCTTGGAGGA--AAACAAAGAAATTTTGGTTGTATTATATTAATAAGTCTAGGGCTTCTTTGTAGTGCAGTGGGGCTTT-TCATCTGAATGGCATTCTAATAAGTG-GT--GATAATGGTCTTGCAGGGTGGAGATGAGGGACCTTTTATCTGAGACTCACGCGGAGCGCCAGAAGAGTACTAGCATGAAAGCTCAACGGAGGGAAGGACTCCAGTGAGCTGTCAATAAAACTGCAGCTCTGGCTGGCAGCCAAAGCCACAGTGGAGCTTAGGGTGCTGCCTCCTGAGCTGCAGGTGGTA-CCTGGTGGTGCCTGTAATTATGCAGCTTTTGTATA-TCAGAGCTTTGGCCA-CCTCTTCCTCAGATCTTCCGGTGCCTTCCTTCACCTCCCAAGTCAA-CCCCAAGTGAC-TCC-TGCTTGCCTTGC--GAACCCCCTGCTTACGCTGTG-C---TCAGCGTGTTCTTTCCCGG-CGCCCAGGTCCTTGGATTC-AATTACACG-ACTACAGAGCCCTCTTTTCGTCCCTTTATACCTTTGGTTCTTAAAGCAGGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22743255 1940 + 28711273 GCTAATCAGTGAA-TTTTGAACTAAATTGAACTAAACAAAG-GACATGGATGTGAAAATCTAATGA-----CAGTTTCTCTTT-GAATGAATA-TTCTTTGCAAATATTCCAATTATTAGGAAATCAAAAG----AGTACATGAAGTCTACCCCCAACCTACCTAAGGTCATAGGGAACTTAC-AATCCTGGGG---------TCCCATTTACTCCACTAACTCAAGAATGAAATTCACTCCAGTTCACTCCAGCCTGTTAAAATTTTGAAAACCTTGCAAGAAAGAGGCTAAATTTACGAGAGATAGTGGCATTGTGTTTACTTACCAGC----CAGTCTGTCTGCAGCCTCCATCCTGAATTCTTGCACCATTTTACCTTCTGCAGGGCAGCCAGCAGG--GGAACAGGAATCTCTAGGAGTAACTGGCAGATAACAGAGGTCACCTGTTCTCTCTTGCACCTT-CCACGTGGCT-----------GCCGATTGGCCATGACCTGCAGCCAGTGTAGGTCTGACGATCCCTGCTCCTCCTTTCCTTTTTCTAA-----------------------------------------CCCATAGTCCA--------------------------TACTCATTCAGGAATGGGTAGCATTGCTCCTTTCTGACTCTACACTGCCCGGGTGTAGACAGCAGCATAGTTCTTAGTCACAAACAA---------------ATCTCA----GGATCATTGGTGCAATGCTGGCGTTCTGCACAGCTTGGAGCAATGTTACTTCCTTCAGAGGCCTCAGGAGCTATGGACCC-ACACCTGTAGATCTTTTCTGAGTCATCTCCGTTTAAATCTTGCAGGATACTCAGCAGGGTGGCCGACATTTCTGTCCAGCAGTTTAGTTCGTCTTGGGT-ACTTCTCAGCTTTGCCCTGTCCAGGTTAGCCCTTTTGCAGATGGGCTACCTTTGTCTGATTTGTGTGGCCCTGCGCGGTTCTGAGAGTT----TCCTCCAGCTTTCCTCCTTG----CCTCTTCTT-CTTATTCTTACCT------------------CTCCT-----T--------GTCTTCATCTCTTTCCATTCCTCTGATCTCTCTGCCATGTATGGAAATTC---CGTTTTTGATTTTTTTGTCAGTCTAATCCTTGGGTCTTCTCATACTTTAAACATAAACATTC-TCCTCTGACTTAAGCCTTCAC-ACGGCTAGATCAGCCAATTCGTAGATAAGACCAAAGAGCTTGGAGAATGCTGTTGGCATTTAGTTTGTGCTCAGGGTAAAACTTCCCTGGGTGGGGAAGAAGAAAGGGCTGAGTAGAAATAGCTCCTTGCCGGAAAGCCAGTGCTTCAGAGCAGGCTGATAAGAATTAGGAAGCAGGAGGCCTGT--------------------G--CATTTATCAGTCGGATGCACGAGCCCTTCCATTCATCTCCAGCCTGGATGAAATGAGACAGAAGCTGAT---GGTGACTGCCACTGCCTACCC-AGCGTCCTTCCTCTGGGCAGTCTCAGTGGTACCTGCCTCCCGACCCACTTATTTCTCCCCATTTAATTGTCTCGGAGGA--AAACAAAGAAATTTTGATTTTATT------ATAAGTCTAGGGCTTCTTTGTAGTGCTGTGGTGCTTT-TCATCAGAATGGCATTATAATAAGCG-GT--GATGACGGTCCTGGAGAGGGTAGATGAGGGACCTTTTATCTAAGGCTCCAGCAGAATGCCAGAAGAATGCGACCATGAAAGCTCAGTGGAGGGAAGGGCTCCAAAAAGTTGTCAATAAAACTGCAGCTCTGGCTGGCAGCCAAAGCCATGGTGGAGGTTAGGGCGCTGCCTCCTGGGATGCAGGTGGTA-CCTGGCGGTGTCTATAATTATGCAACTTTTGTGGA-TCAGAACTTTGGCCT-CCTCTTCTGCAGATCT---GGTG-CTTTCTTCACCTCCTGGATCAA-CCCCAAAGGAC-TCC-AGTCTGCCTTGC-AAAACCCCATGCTTATGCTGTG-C---TCAGCGTTTTTTTTTCTGGATGCCCCAGTCCTTGGATTC-AATTATGCA-ACTCCAGAGGCCTCCTTGGGTGCCTTTATAGCTTTGGTTCTTAGAGCAGAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22028858 1982 - 122082543 CCTAGTGAATGTATTTTTGAATTAAATCAAACCAGATAAAGAAAGGCAGGTTTGAGGGTCCATGAAGATCTCAGTTTCTTCTTAGGGGGATTA-AAGCATGCAAGTAGTCCA---------------AGAA----ATCAC-TTAAGTCTACTGCTAGCCTGAGTAA-ATCACAGGGCATGGTT-ATGCCTGGGG---------CCTCATTTCTCTTATTTTTTCAAGAGGCAAA----------TCTACTCCAGCTAGTTGAT---------ACAGTGCAAGAG-------------ACACGGGATGTCAGCTTTGTGCTTACTCACCAGC----CAGTCTGCCTGAACGCTCCATCCTGATGAATTGTTCCATGTCACCTTCTGCAGGACAGTCAGCGGGGA-AACCAGATATCTCCTGGAGTAGGTTGCAGGCGACAGAGGTGACCAGT--CCTCCTACATCTT-CAATGTGACT-----------GATGTTTGCCCAACACCTAAAGCCAGTGAATGCCTGAATATTCTTGCTCTTCCTCTCTTTTATCCCCCTGTACTCCATCAGAAACAGATGGCATTTTATGGTTGACTGTCCCCACTCCTTCCCTATCTCATCTCCAGGTTCTCCATACTTGGTCAGGAACAAATGGCATTGCTGCTCTTGGAGTTTACATCGTCTGGAGGCAAACAACAGTGCGTTTC--AGCTACAAACAA---------------ATC-CGGGCTGGATGATGGAGACGATGCT-CTTCTTTGGACACGGTGGGTCAAGGCTGA-TCGTTCAGAGGTCTCAGAAGCTGTGGTCCT-ATGTCTGCAGGTCTTGCAGGGCTGGTCTTCGTTTACCCCTTACAGGATACTCAGCAGGGAAGTCTGTTTTTCTGGCCATCAATTTTGTATGTCTCGGTTACCTTCTCAGCTTTGCACTCTCCAGGCTAGCCCACTTGAAAGTGGGCTAGCTCTATCTGACCCACGTAGCACTGCACAGTT-TGGTGCTC----CCTTACAGGTTTCCTTCTTGTTCCTTTCTTCTC-TGTGTTCTTGTCTTTCTCGCTGTACGGACTCCTCCT-----G--------GCCTCCATCTGGCTCCG--TCTTTGATCTCTCTGTACTG-ATAGGATCTT----ATTTTTGTCCTTCTGGTCGACCACACCTGCAAATCTTCTCCTATAGAGCAACCAAACATTCTTTCTTTGGTGAAGGCCTCTATGGGGGCTACACTGGGCAGCCCATAGATAAGACCAAAGAGGTTGGAGGATGCTGCAGGTATTCAACCTGTGCTCAAAGCAAGGCTTCCTTGGATGGAGAAGAAGGCAGG-TTGAG--GAAGCAGCTCTTTGCTGGAAAGCCAGTGCTTTGGAGCAGTCTGACAGGCATTGGGAAGTCAGAGGCTCATGCTTGTCTTTAGTCATGCATGGCTTCTCATC-TTTGGATGTAGCCACCTTGAATATCATTCCAAACCC---CAGAAGGTTACAGGAGCTGCC--GACTACCAGCG-----CTGGTCTGATGTCCTT---CTGGGAAGTCTGGGTGGTACCTGTCTCCAGACCCGCCTATTTCACCCACTTTCAAAGTCTTGGGGGGGTGGGAGAAGAAAATTTGATTTTATT------ACAAGTCCAAGGCTCTTTTGTAGTGCTCTGGGCCTTTAGAAACTGAATGGTTTTATAATAAGTGTGG--GATAATGGTCTTGGGGACTGCAGACACTGGACCTTTTATCGGAGCCTCCAGC-------CACATGAAGACTACCATGAAAGCTCACTGGGGAGAGGGACTCCAATGAGGTGTCAGTAAAGAAGAAGCTTTGGCTGCGAGCCAAAGCCACA--GGAGCTT-GGGTGATG--TACTGGAGTGCAGTTGGTA-TCGGCTGGTGCCTATAATTACCTAACCTTTATACATCTCTAGCTTGGGCCA-CCTCATCCTCAGATCTTCTGTTCTCTTCCATCACCACCCATTTCTA-GCTTGGC--AC-TCC-TGC------TAAAGAATAGTCCTGTGATTTCAGGG-CATTTCAATATTTTCTTTCCTAG-CATCTAAGCCCTTGGATTC-AATGATATA----ATGTAGCCCCTCTTTCATGCTTTTGAACCTTCGGTCCTTAGAACATCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21361939 1871 + 61074082 CACAATAAGCATG-TTTTGAATAAAATTGATCTAAATAAAT-AAAGTGGGCTTGATAGTTCCTTGACACCTCAGTTTCTCTTT-GAGTTACTACAAATTAGTTGAAATATCA---ATTAGGAAATCAAGAG----TGTACAAATAGTCTGCTCCTAGCCTGTGTGAAATCTTGAGGACCATAC-AGGGCTAGAG---------TTCC-TTTTCCCCACTAATTCAAGAAGCAAA----------TTCACTCAAGCCTACTGGTATTTTAAAAACACCACAAGACAGAGGCTAGATTTACAAGAGATGGCAGCATTATGTTCACTCACCGGT----CACTCCATTTGCTGTGCGTCTCCTGAATTCTGTTGCCTTTTCAACTG----GGGGCAATTGCTAGG--GAAAAAGGAATCTCTGG---------------------------------------------T-TGATGTGGCT-----------GCTGGCTGGGCATGACCTGAAGCCAGTGCAGCTCTGACTGCTTCTGCTTCTTTCTTCCTTTCTCCTG-----------------------------------------TCCACAC--CT--------------------------TACTCATTCAGGAACAGGTGGCATTGTTCCCTTCTCATCTTATGCTGCCTG-GTATAGATAACACTGTATTTCTCAGCCACAAACAA---------------ATTTCAGCCTGGATTGTGGAGGTGATGCT-CTGGTCTGGGCACCTCAGGG-AATGCCACTTCTTTTGGAGGCCTGAGAAGTTGTGGTTCC-ATGTCGGTAGATCTTTCCAGAAGCATCTGGATTTATATCATGCAGGACACTCAGCAGCGTGGGCCAGTCTTTTGTCCATGGATGTGGGTCCCCTTGGCT------------TTGTGTTCTCCAGGTTCACTCATTCGAAGATGGGCTAGCTTTGTCTGAGCAGCACGTCACCTCTCGTTGCTAAGAATT----CCT-----------TCCTGG----CCTCTTCACATCTGTTCATATCT------------------CTTAT-----TCAACACACGGCTCC--TGATTTCCATTTCTCTGGTCCCTTGGCACAGTATGCAAACTC----TAGTATTGCTTTTTTGTTGACCCAATTCTTGAATCTTCTTGTTCTTAGA-CCTGAACACTC-TCCTTGGACTAAAGCCCCCAT-GAAGCTGCGCTGGCCAAT-AGTGGGTTCAACCAAAGAGCTTGTAGA--TCTGCTGCCAT-TGGTCTGTGCTCAGGAGCCACTGTCTTTGGGTAGGGAGGAAGGCAGGGTTGA---AAAGCAGCTCCAGCCTAGAAAGCCAGTGCTCTGGAGCAGGCTGACAAGAGGCAGGAAGCAGGAGGCCAGTGCCGTTCCTTA--TGGACAAA--TGCTCATCAGTCTGATTGAC-AGGTTTTCCATCTGTCCCAAGCCCAGCTGAAGAGAGAGAGAAGCTCCC--TAC-----------GCCTGGCCTTGAGTCCTTCCTCTGAAAAGTCTCAGGGGTGCATGCCTCAGGACCCACCTATTTCTGCCTCTTTAATTGCCTGGGAAGA--AAACAAAGAAATTTTGGTTTTATT------ATAAGTCTGAGGCTTCTTTGTAGTGTGGTGGGGCTTT-CCGTCTGAATGGCATCATAATAAGCA-GCGAGATAATGGCCTTGGAGAGGGTAGATGGAGGACCTTTCATCTGAGACCCAAGCGGAGTGCTGCATGAATACCATCATGAAAGCTTGTTGGGGAGAAGGACTCCAATAAGTTGTCAATAAAACTGCCACTCTGGCTGGCAGCCAAAGCCACAGTGGAAGTTGAGATGTTGCTACCCAAGATGCAGGGGGTATCCCAGTGGTGCCTATAATTACGCAACCTTTATATACTCAGAGCTTTGGCCACCCCCTTCCACAGACCTTCTGGTGCCTTGCCTCACCTTCCAAATCAA-CCCCAAATGAC-TCCAAGCTTGCTTTACAAAA------TGCTTCTGCTGTGTC---TCAGCACTTTCTGTCCTGG-TGCCCAAGTCCTTGGACTTAAATAATATC-ACTACAGAG-CCGTCTGTGGTACCTTCTAACATTTGGTTCTTAAGCCAGAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 342533 1861 - 852752 TTTAAAAAAAGTG-TTAAAAAATAAATTGAACTAAAT-----GCAATGGGTTTGCTAGTCCATTGGCTGCTCCATTCCTCCCT-GGGTGAAGA-CAATTTGCAAATATATCA---ATTAGGAAATAAAGAG----AGCATAGGAAGTCCACTCCTTACCTGTGTGAGATCAAGGGGACCTTAC-AATCCTAGAG---------TCCCA-TTGCCCCACTAATTCAAGAAGCAAA----------TTCACTCACGCTT-CTG----------------GCAAGAAAGAGGCTAGATTTACAAGGGATGGCAAGATTATGCCTACTCACCAGA----CTGGCTGTCT-------CCATCCTGAATTCTTCTGCCATTTCAGATTCTGCAGGGTTGCCAGCAGGGAGA----GGAATCTTCAGAAGTAGCCAGCAGCCAACTAGGGTAACCTGTTCTTTCCTGCATCCTACTGTGTGGCT-----------GCTGATCGACCACAGCCTGAAGCCAGTGCAGATCTGACCAT-CCTGCTTCTTTTTTCCTTTCTCCTC-----------------------------------------TCCACACTCCT--------------------------TATT----CAGGAACAGGCAGTGTTGCTCCTTTCTGACTTTCCTCTGCTTGGGTGTAGAAAACAGTGCATTTCTCAGCCATAAAAAAAAAAAAAAAAAAGAAATCTCAAACTGGATCATGGAGGTGATGCT-CTTGTCTGGACACATTGGAACAACGCCACTTCTTTCAGAGGCTTCACAAACTGTGGTCCCAGTGCCTGCAGACCCTTTATGAACCATCTCCATTTACATCTCCCAGGACACTTGGCA-GGTAGGTCACTCTTCTGTTCATCACCTTAGGATGTCTTGGCT-GCTTCTGAGCTTTGCATTCTCTAGGTTCATTCATTCAAAGATGGG-------TGTCTGGTTAGCGTGGTCCTGCA-GAGTCCGAGGGTT----CATCTCAGGTTTTCTCTTTT----TCTCACCTT-TATGTTCTTCTCT------------------CTCTTACACAT--------ACCTCTCCTTGCCTCCATCTCTCTCATCTCTC---------CACAAATCT----TATATTTGCTTTTTTTTTAGCCTAATCCTTGGATCTTCTCATACTTAAAGACTAAGCATTC-TCCTTTGACTAAAGGCTCCAT-AGGGCTACACCAGCCAATCAGTAGATAAGACCAGGGAGCTTGTGGCATGCTGCTGACATTTAGTCCGTGCTCAGGGTGAGAGCTTCCTGGGTGGGGAGGAAG-------------GAA-------------GGAAAGCCAGTGCTTTGGAG----CTGACAAGAGTTGGGAGGCAGAAGAACTGCACTATTCCCGA--CAACCGAG--CTCTCATCAGTCTGAAGCTCGA-TCTTTCCATTCGTTCCAAGCCTGGGAGATGTGTGATGGAAGCTGCT-------------GCCTCCTAGCCTCACATCTGCTCACTGGAAAGTCTCAGGGATGCCTACCTTGGGGCCCACCTATTCCTTCCC-TTTAATTGTTTCAGAGGA--AAA--AAGAAATTTAGGCTTTATA------ATAAGTCGTGGCCTTCTTTGTAGTGCTGTGGGATCAC-TCATCTTAATGGCATTATAATAAGTG-GT--GATAATGACCTGCAAGAATATTTAAGAAGGACTTTTTATCTGAGACTCAAGCAGAGTACCAGATGAATACTATTATGAAATCTCTGCGGGGAGAAGGACTCCAATAAGTTGTCAATAAAATAGCAGACCTGGCTGGCAGCCAAAGCCACAGCAGAGGGTGGGGTGCAGCCATCCGAGATGCAGGTGGTA-TCTGATGATGTATATAATTATGTAACTTATATGTATTCAGAACTTTGGCCA-TCCTTTCCTCAGG--------------CCTTCACCACCCAAACCAT-CCCCAAACAACATCT-GGCTTGCCTGATGAAATCTCC-TGCTTATGCTGTG-TG--TTAGCATTTTCTTTCCCAG-TGCCCAGATCCGTGGATTC-AATTAGACAGACTGAAGAGTCCC---------TTTTTATACCTTTGGCTCTTAAAGCAGCT i dasNov3.JH570468 I 1221 C 0 a score=62125.000000 s hg38.chr17_GL383564v2_alt 33582 4 + 133151 GGCA s panTro5.chr17 16227501 4 + 83181570 GGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134853 4 + 83442489 GGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3969972 4 + 4267968 GGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949690 4 - 2193130 GGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30022992 4 - 77216781 GGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935588 4 - 80997621 GGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1991858 4 + 10377808 GGCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879305 4 - 8458610 GGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835017 4 + 75148670 GGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058483 4 + 4244037 GGCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086355 4 + 4569836 GGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055591 4 - 159171411 GGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1777964 4 + 3513951 ggca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1826835 4 + 1920343 GGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6938697 4 - 7032639 GGCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2947216 4 + 8555354 GGCA i proCoq1.NW_012135969v1 C 0 I 397 s otoGar3.GL873537 22745195 4 + 28711273 AGCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22030840 3 - 122082543 -GTA i mm10.chr11 C 0 C 0 s canFam3.chr9 21363810 4 + 61074082 TGTG i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 344394 4 - 852752 TGCA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35862836 626 - 65901067 I a score=1587324.000000 s hg38.chr17_GL383564v2_alt 33586 133 + 133151 ---TCTCCACTCGGGCTGG-AGATGGgaagcccaggacagaatatg---gtacatcttcctgatgtatccatttctcttagagaattaagCAAAGTATTTGAAAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTTAAAAAC s panTro5.chr17 16227505 133 + 83181570 ---TCTCCAGTCAGGCTGG-AGATGGgaagcccaggacagaatatg---gtacatcttcctgatgtatccatttctcttatagatttaggcaaagtatttgaaAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTTAAAAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134857 133 + 83442489 ---TCTCCAGTCAGGCTGG-AGATGGgaagcccaggacagaatatg---gtacatcttcctgatgtatccatttctcttagagatttaggcaaagtatttgaaAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTTAAAAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3969976 133 + 4267968 ---TCTCCAGTCGGGCTGC-AGATGGGAAGCCCAGGACAGAATACG---GTACATCTTCCTGATGTATCCATTTCTCTTACAGAATTAGGCAAAGTATTTGAAAATTTAACTGGAAATT-TAAAAG--GGGCTTTTTAAAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949694 133 - 2193130 ---TCTCCAGTCGGGCTGG-AGATGGGAAGCCCAGGACAGAATATG---GTACATGTTCCTGTCATATCCGTTTCTCTTAGAGAATTGGGCAAAGTATTTGAAAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTAAAAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30022996 133 - 77216781 ---TCTACAGTAGGGCTGG-AGATGGgaagcccaggacagaatata---gcccatcttcctggtgtatccttttctcttagtgaattgggcaaaacatttgaaagtttaactggaaatt-taaaag--gggcttttagaaaac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935592 133 - 80997621 ---TCTACAGTAGGGCTGG-AGATGGGAAGCCCAGGACAGAATATA---GCCCATCTTCCTGGTGTATCCTTTTCTCTTAGTGAATTGGGCAAAACATTTGAAAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTAGAAAac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1991862 133 + 10377808 ---TCTACAATAGGGCTGG-AGATGGGAAGCCCAGGACAGAATATA---GCCCATCTTCCTGGTGTATCCTTTTCTCTTAGTGAATTGGGCAAAACATTTGAAAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTAGAAAac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879309 133 - 8458610 ---TCTACAGTAGGGCTGG-AGATGGgaagcccaggatagaatata---gcacatcttcctggtatatccatttctcttagcgaattgggcaaaatatttgaaagtttaactggaaatt-taaaag--gggctttttaaaaac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835021 133 + 75148670 ---TCTACAGTAGGGCTGG-AGATGGGAAGCCCAGGACAGATTATA---GCACATCTTCCTGGTGTATCCTTTTCTCTTAGCGCATTGGGCAAAATATTTGAAAGTTTAACTGGAAATT-TAAAAG--GGGCTTTTAAAAAac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058487 133 + 4244037 ---TCTACAGTAGGGCTGG-AGATGGgaagcccaggatagaatata---gcatatcttcctggtatatccatttctcttagcgaattgggcaaaatatttgaaagtttaactggaaatt-taaaag--gggctttttaaaaac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086359 133 + 4569836 ---TCTACAGTAGGGCTGG-AGATGGgaagcccaggacagaatata---gcacatcttcctggtgtatccttttctcttagtgaattgggcaaaatatttgaaagtttaactggaaatt-taaaag--gggctttttaaaaac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055595 133 - 159171411 ---TCTCCAGTCAGGCTGG-AGATGGGAAGCCCAGGACAGAATGTG---GTACATCTTTCTGGTGTATCCATTTCTCTTAGAGAATTGGGCAAAATATTTGAAAGTTTAACTGGAAATT-TAAAGG--GAGCTTTTTAAAAac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1777968 133 + 3513951 ---tatgcagtcaggctgg-agatgggaagcccaggacagaatgtg---gtacatctttctggtgtatccatttctcttagagaattgggcaaaatatttgaaagtttaactggaaatt-taaagg--gagctttttaaaaac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1826839 133 + 1920343 ---TCTCCAGTCAGGCTGG-AGATGGGAAGCCCAGGACAGAATGTG---GTACATCTTTCTGGTGTATCCATTTCTCTTAGAGAATTGGGCAAAATATTTGAAAGTTTAACTGGAAATT-TAAAGG--GAGCTTTTTAAAAac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6938701 133 - 7032639 ---TCTCCAGTCAGGCTGG-AGATGGgaagcccaggacagaatgtg---gtacatctttctggtgtatctacttctcttagagaattgggcaaaagatttgaaAGTTTAACTGGAAATT-TAAAGG--GAGCTTTTTAAAAac i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22745199 129 + 28711273 -----TACAAACCAGAAGG--GATGGGAGGCCCAGGAAACAATATATTTGCTTATCTCCCTGCTGTATCCATTTTACTTAGAGAATTGGGCAAAATGTTAGAAAGTTAAACTAGGAATT-TAAAGG--TGATTTTTAAT---- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22030843 120 - 122082543 ---TGCACATCCAAGCTGG-AGCTTGGATGCCCAGAGCAAAGCACT---GAGT---------TTACATGTATTGAACTAGGAGAACTAGACAGAAGGGTAGAACGTTTAACTAGAAATT-TCAAAG--CGATTTTTAAT---- i mm10.chr11 C 0 C 0 s canFam3.chr9 21363817 133 + 61074082 ---AACTCAGTAAGGCTGG-GGATGGGA-GCCCAGGACAGGATGTG---GTGCATCTTCTGGGTGTGTTGATTTCGCTGAGAGGATTGGGCAAAATCTTTGAAAGTTTAATTGGAAATCGTAAAAC--TGTtttttttttaag i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 344398 135 - 852752 TGTAACCCAGGTGGGCTGGGGGACAAGAAGCCCAGGACAGCGTGTG---GTATATCTTTCTGGTGTATCAATTATGCTTAGAGAATTCTGGAAAACATTAGGAAGTTGGACTGGAAACT-TTGAAGCTTGATtttttaa---- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I a score=10563.000000 s hg38.chr17_GL383564v2_alt 33719 2 + 133151 AT s panTro5.chr17 16227638 2 + 83181570 AT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134990 2 + 83442489 AT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970109 2 + 4267968 AT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949827 2 - 2193130 AT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46055728 2 - 159171411 at i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778101 2 + 3513951 at i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1826972 2 + 1920343 at i cebCap1.NW_016107730v1 C 0 I 227 s aotNan1.NW_018502359v1 6938834 2 - 7032639 at i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22745328 2 + 28711273 GT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22030963 2 - 122082543 GT i mm10.chr11 C 0 C 0 s canFam3.chr9 21363950 2 + 61074082 at i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 344533 2 - 852752 gt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=-511.000000 s hg38.chr17_GL383564v2_alt 33721 1 + 133151 T s panTro5.chr17 16227640 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134992 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970111 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949829 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46055730 1 - 159171411 g i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778103 1 + 3513951 g i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6938836 1 - 7032639 g i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22745330 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22030965 1 - 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 21363952 1 + 61074082 t i canFam3.chr9 C 0 I 41 s dasNov3.JH570468 344535 1 - 852752 t i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=20515.000000 s hg38.chr17_GL383564v2_alt 33722 4 + 133151 AAAG s panTro5.chr17 16227641 4 + 83181570 AAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134993 4 + 83442489 AAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970112 4 + 4267968 AAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949830 4 - 2193130 AAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46055731 4 - 159171411 aaag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778104 4 + 3513951 aaag i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6938837 4 - 7032639 aaag i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22745331 4 + 28711273 AAAG i otoGar3.GL873537 C 0 I 52766 s mm10.chr11 22030966 4 - 122082543 AAAG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 344536 4 - 852752 aaag i dasNov3.JH570468 C 0 I 218 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e canFam3.chr9 21363953 41 + 61074082 I e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=2100.000000 s hg38.chr17_GL383564v2_alt 33726 1 + 133151 C s panTro5.chr17 16227645 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134997 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970116 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949834 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46055735 1 - 159171411 c i calJac3.chr5 C 0 I 208 s mm10.chr11 22030970 1 - 122082543 C i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21363953 41 + 61074082 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=4035.000000 s hg38.chr17_GL383564v2_alt 33727 4 + 133151 Tggc s panTro5.chr17 16227646 4 + 83181570 Cggc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16134998 4 + 83442489 Cggc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970117 4 + 4267968 Cggc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949835 4 - 2193130 Cggc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s mm10.chr11 22030971 4 - 122082543 CAAC i mm10.chr11 C 0 I 340 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21363953 41 + 61074082 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=155911.000000 s hg38.chr17_GL383564v2_alt 33731 174 + 133151 tgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagattgagaccatccttgctaacacggtgaaactccatctctactaaaaatacaaaaaattagccgggcgtggtggtgggcacctgtagtcctagctactcagg s panTro5.chr17 16227650 174 + 83181570 tgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagattgagaccatccttgctaacacggtgaaactccatctctactaaaaatacaaaaaattagccgggcgtggtggtgggcacctgtagtcctagctactcagg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135002 174 + 83442489 tgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagattgagaccatccttgctaacacggtgaaactccatctctactaaaaatacaaaaaattagccgggcgtggtggtgggcacctgtagtcctagctactcagg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970121 174 + 4267968 tgagcgcggtggctcacgcctgtaatcccagaactttgggaggctgaggcgggtggatcacgaggtcaggagattgagaccatccttgctaacacggtgaaactccgtctctactaaaaatacaaaaaattagccgggcgtggtggtgggcacttgtagtcctagctactcagg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1949839 174 - 2193130 tgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcacgaggtcaggagagtgagaccatccttggtaacacagtgaaaccccatctctactaaaaatacaaaaaattagctgggtgtggtggtgggcacctgtagtcccagctactcggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21363953 41 + 61074082 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=100337.000000 s hg38.chr17_GL383564v2_alt 33905 115 + 133151 aggctgaggcaggagaatggcatgaatctgggaggcggagcttgcagtgagctgagatcgc---tccactgcactccagcctgggtgacagagcaa-----gactccatctgaaaaaaaaaaa s panTro5.chr17 16227824 115 + 83181570 aggctgaggcaggagaatggcatgaatctgggaggtggagcttgcagtgagccgagatcac---tccactgcactccagcctgggcgacagagcga-----gactccatctcaaaaaaaaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135176 115 + 83442489 aggctgaggcaggagaatggcatgaatctgggaggtggagcttgcagtgagccgagatcac---tccactgcactccagcctgggcgacagagcga-----gactccatctacaaaaaaaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970295 115 + 4267968 aggctgaggcaggagaatggcatgaatctgggaggcggagcttgcagtgagccgagatcac---tccactgcactccagcctgggcgacagagcga-----gactccatctcaaaaaaaaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950013 115 - 2193130 aggctgaggcaggagaatggcgtgaatccgggaggtggaacttgcagtgagccgagattgc---gccactgcactccagcctgggtgacagagtga-----gactccatctcaaaaaaaaaaa i nomLeu3.chrUn_GL397460_1 C 0 I 414 s canFam3.chr9 21363994 104 + 61074082 aggcagagggagaagca-ggctt---cctgaga---gaagtctgaaatgggactcgatctcaggaccccaggatcacaacctaagccaaagAGCCACCTAGGTTTCCTGCT------------ i canFam3.chr9 I 41 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=1336.000000 s hg38.chr17_GL383564v2_alt 34020 2 + 133151 aa s panTro5.chr17 16227939 2 + 83181570 aa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135291 2 + 83442489 aa i panPan2.chr17 C 0 M 403 s gorGor5.CYUI01015385v1 3970410 2 + 4267968 aa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950542 1 - 2193130 -a i nomLeu3.chrUn_GL397460_1 I 414 I 13 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21364098 0 + 61074082 C e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C a score=11317.000000 s hg38.chr17_GL383564v2_alt 34022 52 + 133151 TtatatatatatatatatatatatatatatatatatatatatatatataAAG s panTro5.chr17 16227941 34 + 83181570 ------------------aaatatatatatatatatatatatatatataAAG i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970412 52 + 4267968 aaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatataAAAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950556 52 - 2193130 acatatatatatatatgtatatatatatatgtgtgtatatatatatataAac i nomLeu3.chrUn_GL397460_1 I 13 C 0 s canFam3.chr9 21364098 24 + 61074082 --------------------TTGTTTGTTTGTttgtttttatat-------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e macNem1.NW_012014910v1 1991995 0 + 10377808 C e colAng1.NW_012122154v1 2086492 0 + 4569836 C e manLeu1.NW_012106252v1 2058620 0 + 4244037 C e chlSab2.chr16 64835154 0 + 75148670 C e cerAty1.NW_012006043v1 1879442 0 - 8458610 C e rheMac8.chr16 30023129 0 - 77216781 C e macFas5.chr16 27935725 0 - 80997621 C e panPan2.chr17 16135293 403 + 83442489 M a score=36003.000000 s hg38.chr17_GL383564v2_alt 34074 7 + 133151 attaaag s panTro5.chr17 16227975 7 + 83181570 attaaag i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970464 7 + 4267968 attaaag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950608 7 - 2193130 attaaag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023129 7 - 77216781 attaaag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935725 7 - 80997621 attaaag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1991995 7 + 10377808 attaaag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879442 7 - 8458610 attaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835154 7 + 75148670 attaaag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058620 7 + 4244037 attaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086492 7 + 4569836 attgaag i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21364122 5 + 61074082 --taaag i canFam3.chr9 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6938841 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778108 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e panPan2.chr17 16135293 403 + 83442489 M a score=1238363.000000 s hg38.chr17_GL383564v2_alt 34081 188 + 133151 ccaacatggatatattatggaatatagggtcaattcatatgaagtttaaagatcaactacaagtgatttcaGGCC-GTGGAGGCCCCTTTGGGCTATCTCCTGACTTTCCTAACATATCCATCTACTCTGTTCGGATACTATGGATAACCTTA-GGAAATGTTTGACAAAGACCTCCTTATTCCTTTC------------------TC s panTro5.chr17 16227982 188 + 83181570 ccaacatggatatattatggaatatagggtcaattcatatgaagtttaaagatcaactacaagtgatttcaggcc-gaggaggcctctttgggctatctcctgactttcctaacatatccatctactctgttcggatactatggataacctta-ggaaatgtttgacaaAGACCTCCTTATTCCTTTC------------------TC i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970471 187 + 4267968 ccaacatggatatattatggaatatagggtcaattcatttgaagtttaaagatcaac-acaagtgatttcaggcc-gtggaggcccctttgggctatctcctgactttcctaacatatccatctactctgttcggatactatggataacctta-ggaaatgtttgacaaAGACCTCCTTATTCCTTTC------------------TC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950615 188 - 2193130 ctaacatggatacattatggaatatagggtcaattcatacgaagtttaaagatcaattacaagtgatttcatgcc-gtggaggcccctttgggctatctcctgactttccTAACATATCCATCTACTATGTTCGGATACTATGGATAACCTTA-GGAAATGTTTGACAAAGACCTCCTTATTCCTTTC------------------TC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023136 206 - 77216781 ccaacatggatatattatggaatatagggtcaattcacatgaagtttaaagatcaaatacatgtgatttcatgcctgtggaggcccctttgggctatctcctgactttcctaacatatccatctactctgtttggatactatggac-acccga-agaaatgtttgacaaacacCTCCTTATTCCTTTCTCTCTCCTTATTCCTTTCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935732 206 - 80997621 ccaacatggatatattatggaatatagggtcaattcacatgaagtttaaagatcaaatacatgtgatttcatgcctgtggaggcccctttgggctatctcctgactttcctaacatatccatctactctgtttggatactatggac-acccga-agaaatgtttgacaaacacCTCCTTATTCCTTTCTCTCTCCTTATTCCTTTCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992002 206 + 10377808 ccaacatggatatattatggaatatagggtcaattcacatgaagtttaaagatcaaatacatgtgatttcatgcctgtggaggcccctttgggctatctcctgactttcctaacatatccatctactctgtttggatactatggac-acccga-agaaatgtttgacaaacacCTCCTTATTCCTTTCTCTCTCCTTATTCCTTTCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879449 206 - 8458610 ccaacatggatatattatagaatatagggtcaattcacataaagtttaaagatcgactacctgtgatttcatgcctgtggaggcccctttggactatctcctgactttcctaacatatccatctactctgtttggataccacggac-acccga-agaaatgtttgacagacacCTCCTTATTCCTTTCTCTCTCCTTATTCCTTTCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835161 206 + 75148670 ccaacatggatatattatggaatatagggtcaattcacatgaagtttaaagataaaatacatgtgatttcatgcctgtggaagcccctttgggttatctcctgactttcctaacatatccatctactctgtttggatactacggac-acccga-agaaatgtttaacaaacacCTCCTTATTCCTTTCTCTCTCCTTATTCCTTTCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058627 206 + 4244037 ccaacatggatatattatagaatatagggtcaattcacataaagtttaaagatcgactacatgtgatttcatgcctgtggaggcccctttggactatctcctgactttcctaacatatccatctactctgtttggataccacggac-acccga-agaaatgtttgacaaacacCTCCTTATTCCTTTCTCTCTCCTTATTCCTTTGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086499 201 + 4569836 ccaacatggatatattatggaatatagggtcaattcacatgaagtttaaagatcaactacatgtgatttcatgcctgtggaggc-----ttggctatctcctgactttcctaacatatccatctactctgtttggatactacggac-acccga-agaaatgtttgacaaacacCTCTTTATTCCTTTCTCTCTCCTTATTCCTTTCTC i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1778108 194 + 3513951 ccaacatggatatatgatggactatagggtcaattcatatgaagtttaaaggtcaactataagtgatttcatgcctgtggaggcccctttgtgctatctcccgactttcctaacatacccatctactctgttcggatactacggataccccga-ggaaatgtttgacaaacacCTCTTTATTCCTTTCTCTCT-------------CA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6938841 194 - 7032639 ccaacatggatgtattatggactatagggtcaattcctacaaagtttaaagatcaactataagtgatttcatgcctgtggaggcccctttgggctatctcccgactttcctaacatacccatctactctgttcggatactatggataccccga-ggaaatgtttgacaaacacCTCTTTATTCCTTTCTCTCA-------------CA i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21364127 176 + 61074082 cttatatgggcatatgatggaatataaagtcaattcacatgaaattttaagat----------TGATCTC---CTTGAGGAGGCTCCTTTGGGCAGTCTCCAGACTTCCCTGAT-TATCTGCTCATGCTGGTCTAATGCTATAGATGTTTTGGTGGTAAGGTTTGACTAGCAAAGCCTTTTTCCCTTCCA------------------ i canFam3.chr9 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e calJac3.chr5 46055736 208 - 159171411 I e panPan2.chr17 16135293 403 + 83442489 M a score=221491.000000 s hg38.chr17_GL383564v2_alt 34269 38 + 133151 TCTGCCCCTGAATATCTTTCCTAGATTATTTAAATGC----A s panTro5.chr17 16228170 38 + 83181570 TCTGCCCCTGAATATCTTTCCTAGATTATTTAAATGC----G i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970658 38 + 4267968 TCTGCCCCTGAATATCTTTCCTAGATTATTTAAATGA----G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950803 38 - 2193130 TCTGCCCCTAAATATCTTTCCTAGATCATTTCAATGG----G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023342 38 - 77216781 TCTGCCCCTAAATATCTTTTCTAGGTCATTTAAATGC----C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935938 38 - 80997621 TCTGCCCCTAAATATCTTTTCTAGGTCATTTAAATGC----C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992208 38 + 10377808 TCTGCCCCTAAATATCTTTTCTAGGTCATTTAAATGC----C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879655 39 - 8458610 TCTGCCCCTAAATATCTTTCCTAGATCATTTAAATGCA---A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835367 38 + 75148670 TCTGCCCCTAAATATCTTTTCTAGATCATTTAAATGC----t i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058833 38 + 4244037 TCTGCCCCTAAATATCTTTCCTAGATCATTTAAATGC----A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086700 42 + 4569836 TCTGCCCCTAAATCTCTTTCCTAGATCATTTAAATGCAAttt i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1778302 37 + 3513951 TCTGCCCC-AAATATCTCTCCTAGATCATTTAAATGC----A i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6939035 38 - 7032639 TCTGCCCCTAAATATCTCTCCTAGATTATTTAAATGC----A i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21364303 0 + 61074082 C e otoGar3.GL873537 22745335 52766 + 28711273 I e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e calJac3.chr5 46055736 208 - 159171411 I e panPan2.chr17 16135293 403 + 83442489 M a score=558.000000 s hg38.chr17_GL383564v2_alt 34307 13 + 133151 ttttt---tttgtttt s panTro5.chr17 16228208 12 + 83181570 ttttt---tt-gtttt i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970696 9 + 4267968 ttttt---tttc---- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950841 8 - 2193130 ttttt---ttt----- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023380 11 - 77216781 tttttctgttt----- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935976 11 - 80997621 tttttctgttt----- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992246 11 + 10377808 tttttctgttt----- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879694 11 - 8458610 ttttttttttt----- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835405 10 + 75148670 ttttt-tgttt----- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058871 5 + 4244037 Atttt----------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086742 11 + 4569836 tttttgtgttt----- i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21364303 0 + 61074082 C e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6939073 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778339 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I e panPan2.chr17 16135293 403 + 83442489 M a score=269040.000000 s hg38.chr17_GL383564v2_alt 34320 56 + 133151 gttttgtattttgagatggagtcttgctctgtca-ccaggctggagtgcagtggcac s panTro5.chr17 16228220 56 + 83181570 gttttgttttttgagatggaatcttgctctgtca-ccaggctggagtgcagtggcac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135702 56 + 83442489 Gttttgttttttgagatggaatcttgctctgtca-ccaggctggagtgcagtggcac i panPan2.chr17 M 403 C 0 s gorGor5.CYUI01015385v1 3970705 56 + 4267968 gttttgttttttgagatggagtcttgctctgtca-ccaggctggagtgcagtggcac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950849 50 - 2193130 ------ttttttgagatggagtcttgctctgtct-ccaggctggagtgctgtggcac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023391 56 - 77216781 -gtttgttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27935987 56 - 80997621 -gtttgttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992257 56 + 10377808 -gtttgttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879705 56 - 8458610 -tttttttttttgagacagagtctcactctgtcacccaagctggagtgcagtggcgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835415 56 + 75148670 -gtttgttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggcgg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058876 55 + 4244037 --ttttttttttgagacagagtctcactctgtcacccaagctggagtgcagtggcgg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086753 56 + 4569836 -tattgttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcgg i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21364303 0 + 61074082 C e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6939073 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778339 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I a score=217669.000000 s hg38.chr17_GL383564v2_alt 34376 50 + 133151 catctcggcttactgcaaccttcacctcccaggttcaagtgattctcctg s panTro5.chr17 16228276 50 + 83181570 catctcggcttactgcaaccttcacctcccaggttcaagtgattctcctg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135758 50 + 83442489 catctcggcttactgcaaccttcacctcccaggttcaagtgattctcctg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970761 50 + 4267968 catctcggcttactgcaaccttcacctcccaggttcaagtgattctcctg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950899 50 - 2193130 catctcggctcactgcgaccttcacctctcgggttcaagtgattctcctg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023447 50 - 77216781 gatcctagctcacagcaagctccgcctcccgggttctcaccattctcctg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936043 50 - 80997621 gatcctagctcacagcaagctccgcctcccgggttctcaccattctcctg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992313 50 + 10377808 gatcctagctcacagcaagctccgcctcccgggttctcaccattctcctg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879761 50 - 8458610 gatcctagctcacagcaagctccgccttccgagttctcgccattctcctg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835471 50 + 75148670 gatcctggctcacagcaagctccgcctcctgggttctcgccattctcctg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058931 50 + 4244037 gatcctggctcacagcaagctccgccttccgggttctcgccattctcctg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086809 50 + 4569836 gatcctggctcacagcaagctcccccttccgggttcatgccattctcctg i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21364303 24 + 61074082 CATCTGCGC--------------------------CAAATAGTTTTCCTG i canFam3.chr9 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6939073 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778339 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I a score=738517.000000 s hg38.chr17_GL383564v2_alt 34426 138 + 133151 cctcagcttcccgagtagctgggactacaggtgggtgccaccatgcccagctaatttttt---tgtatttttagtagagatgggtttcactatgttggccaggatggtctctatctctagacctcgtgatccgccggcctc s panTro5.chr17 16228326 138 + 83181570 cctcagcctcccgagtagctgggactacaggtgggtgccaccatgcccagctattttttt---tgtatttttagtagagatgggtttcactatgttggccaggatgctctctatctctagacctcgtgatctgccagcctc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135808 138 + 83442489 cctcagcctcccgagtagctgggactacaggtgggtgccaccatgcccagctattttttt---tgtatttttagtagagatgggtttcactatgttggccaggatgctctctatctctagacctcgtgatctgccggcctc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970811 138 + 4267968 cctcagcctcccgagtagctgggactacaggtgggtgccaccatgcccagctaatttttt---tgtatttttagtagagatgggtttcactatgttggccaggatggtctctatctctagacctcgtgatccgccggcctc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1950949 137 - 2193130 cctcagcctcccgagtagctgggactacaggtgggtgccaccatgcccagctaatttttt---tgtatttttagtagagatgggttttactatgttggccaggatggtctctatctctagacctcgtgatccgccc-cctt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023497 140 - 77216781 cctcagcctcccgagtagctgggactacaggtgcccgccaccacacccagctaatttttttt-tgtatttttagtagagatgggtttcactatgttggccaggatggtctcaatctcttgacctcgtgacccgcctgcctc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936093 140 - 80997621 cctcagcctcccgagtagctgggactacaggtgcccgccaccacacccagctaatttttttt-tgtatttttagtagagatgggtttcactatgttggccaggatggtctcaatctcttgacctcgtgacccgcctgcctc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992363 140 + 10377808 cctcagcctcccgagtagctgggactacaggtgcccgccaccacacccagctaatttttttt-tgtatttttagtagagatgggtttcactatgttggccaggatggtctcaatctcttgacctcgtgacccgcctgcctc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879811 139 - 8458610 cctcagcctcccgagtagctgggactacaggtgcctgccaccacacccagctaa-ttttttt-ggtatttttagtagagatgggtttcactatgttggccaggatggtctcaatctcttaacctcgtgacccgcctgcctc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835521 141 + 75148670 cctcagcctccggagtagctgggactacaggtgcccgccaccacacccagctaattttttttgtgtgtttttagtagagatgggtttcactatgttggccaggatggtctcgatctcctgacctcatgatccgcccgtctt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2058981 139 + 4244037 cctcagcctcccgagtagctgggactacaggtgcccgccaccacacccagctaattttttt--ggtatttttagtagagatgggtttcactatgttggccaggatggtctcaatctcttaacctcgtgacccgcctgcctc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086859 140 + 4569836 cctcagcctcccgagtagctgggactataggcgcccgccaccacactcagttaatttttgtt-tgtatatttagtagagacgggtttcactgtgttagccaggatggtctcaatctcttgacctcgtgacccgcctgcctc i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21364327 0 + 61074082 C e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6939073 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778339 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I a score=253387.000000 s hg38.chr17_GL383564v2_alt 34564 48 + 133151 ggcctcccaaagtattgagattacaggcgtgagccattgtgcccagcc s panTro5.chr17 16228464 48 + 83181570 ggcctcccaaagtattgagattacaggcgtgagccattgtgcccagcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135946 48 + 83442489 ggcctcccaaagtattgagattacaggcgtgagccattgtgcccagcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970949 48 + 4267968 ggcctcccaaagtattgagattacaggcgtgagccattgtgcccagcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951086 48 - 2193130 ggcctcccaaagtattgagattacaggcgtgagccattgtgcccagcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023637 48 - 77216781 ggcctcccaaggtactgggattacaggcatgagccaccacgtccggcc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936233 48 - 80997621 ggcctcccaaggtactgggattacaggcatgagccaccacgtccagcc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992503 48 + 10377808 ggcctcccaaggtactgggattataggcatgagccaccacgtccagcc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879950 48 - 8458610 ggcctcccaaggtactgggattacaggcatgagccactgcgcccagcc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835662 48 + 75148670 ggcctcccaaggtactgggattacaggcgtgagccactgcgcccagcc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059120 48 + 4244037 ggcctcccaaggtactgggattacaggcatgagccactgcgcccagcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2086999 48 + 4569836 ggcctcccaaggtactgggattacaggcatgagccactgcgcccagcc i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21364327 15 + 61074082 GACATTTCAAA----------TACA----------------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6939073 0 - 7032639 C e cebCap1.NW_016107730v1 1826974 227 + 1920343 I e saiBol1.JH378271 1778339 0 + 3513951 C e calJac3.chr5 46055736 208 - 159171411 I a score=60629.000000 s hg38.chr17_GL383564v2_alt 34612 9 + 133151 TTAAATGTG s panTro5.chr17 16228512 9 + 83181570 TTAAATGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16135994 9 + 83442489 TTAAATGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3970997 9 + 4267968 TTAAATGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951134 9 - 2193130 TTAAAAGCG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023685 9 - 77216781 TTAAGTGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936281 9 - 80997621 TTAAGTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992551 9 + 10377808 TTAAGTGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1879998 9 - 8458610 TTAAGTGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835710 9 + 75148670 TTAAGTGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059168 9 + 4244037 TTAAGTGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087047 9 + 4569836 TTAAGTGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055944 9 - 159171411 TTAAGTGCA i calJac3.chr5 I 208 C 0 s cebCap1.NW_016107730v1 1827201 9 + 1920343 TTAAATGCA i cebCap1.NW_016107730v1 I 227 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e canFam3.chr9 21364342 0 + 61074082 C e otoGar3.GL873537 22745335 52766 + 28711273 I e aotNan1.NW_018502359v1 6939073 0 - 7032639 C e saiBol1.JH378271 1778339 0 + 3513951 C a score=22816.000000 s hg38.chr17_GL383564v2_alt 34621 2 + 133151 TT s panTro5.chr17 16228521 2 + 83181570 TT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136003 2 + 83442489 TT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971006 2 + 4267968 TT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951143 2 - 2193130 TT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023694 2 - 77216781 TT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936290 2 - 80997621 TT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992560 2 + 10377808 TT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880007 2 - 8458610 TT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835719 2 + 75148670 TT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059177 2 + 4244037 TT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087056 2 + 4569836 TT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055953 2 - 159171411 TT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778339 2 + 3513951 TT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827210 2 + 1920343 TT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939073 2 - 7032639 TT i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21364342 1 + 61074082 -T i canFam3.chr9 C 0 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e dasNov3.JH570468 344540 218 - 852752 I e otoGar3.GL873537 22745335 52766 + 28711273 I a score=359505.000000 s hg38.chr17_GL383564v2_alt 34623 32 + 133151 TTTTATGGCTCTCTCGGTTTGCACTTTTCAGC s panTro5.chr17 16228523 32 + 83181570 TTTTATGGCTCTCTCGGTTTGCACTTTTCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136005 32 + 83442489 TTTTATGGCTCTCTCGGTTTGCACTTTTCAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971008 32 + 4267968 TTTTATGGCTCTCTCGGTTTGCACTTTTCAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951145 32 - 2193130 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023696 32 - 77216781 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936292 32 - 80997621 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992562 32 + 10377808 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880009 32 - 8458610 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835721 32 + 75148670 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059179 32 + 4244037 TTTTACGGCTCTCTCAGTTTGCACTTTTCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087058 32 + 4569836 TTTTATGGCTCTCTCAGTTTGCACTTTTCAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055955 32 - 159171411 TTTAATGGCTCTCTCAGTTTGCACTTTTCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778341 32 + 3513951 TTGAATGGCTCTCTCAGTTTGCACGTTTCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827212 32 + 1920343 TTTAATGGCTCTTTCAGTTTGCACTTTTCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939075 32 - 7032639 TTTAATGGCTCTCTCAGTTTGCACTTTTCAGC i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21364343 19 + 61074082 TTATATGAATCTCTCAGCC------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 344758 32 - 852752 TTGTATGTATCTTTCAGCTAGTATTTTTCCGC i dasNov3.JH570468 I 218 C 0 e mm10.chr11 22030975 340 - 122082543 I e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e otoGar3.GL873537 22745335 52766 + 28711273 I a score=26943.000000 s hg38.chr17_GL383564v2_alt 34655 4 + 133151 C-TCT- s panTro5.chr17 16228555 4 + 83181570 C-TCT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136037 4 + 83442489 C-TCT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971040 4 + 4267968 C-TCT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951177 5 - 2193130 CTTCT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023728 5 - 77216781 CTTCT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936324 5 - 80997621 CTTCT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992594 5 + 10377808 CTTCT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880041 5 - 8458610 CTTCT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835753 5 + 75148670 CTTCT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059211 5 + 4244037 TTTCT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087090 5 + 4569836 CTTCT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055987 5 - 159171411 CTTCT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778373 5 + 3513951 CTTCT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827244 5 + 1920343 CTTCT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939107 5 - 7032639 CTTCT- i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22031315 4 - 122082543 -CTCT- i mm10.chr11 I 340 C 0 s canFam3.chr9 21364362 4 + 61074082 -CTCT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 344790 4 - 852752 --CCTT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2947220 397 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e otoGar3.GL873537 22745335 52766 + 28711273 I a score=1072049.000000 s hg38.chr17_GL383564v2_alt 34659 84 + 133151 TTCAAAACGATCTCTTACCCCAGAAACTTCT-TGTTCTCCAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA s panTro5.chr17 16228559 84 + 83181570 TTCAAAACGATCTCTTACCCCAGAAACTTAT-TGTTCTCCAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136041 84 + 83442489 TTCAAAACGATCTCTTACCCCAGAAACTTAT-TGTTCTCCAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971044 84 + 4267968 TTCAAAACGATCTCTTACCCCAGAAACTTCT-TGTTTTCCAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951182 85 - 2193130 TTCAAAACGATCTTTTACCCCAGAAACTTCTCTATTCTAAAACTAGTTATCAAAGCCTCTACCTTTAACATTCTCTCCCCTACAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023733 85 - 77216781 TTCAAAATGATCTCTTACCCTAGAAACTTCTCTGTTCTCAAACTAGTTGTCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936329 85 - 80997621 TTCAAAATGATCTCTTACCCTAGAAACTTCTCTGTTCTCAAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992599 85 + 10377808 TTCAAAATGATCTCTTACCCTAGAAACTTCTCTGTTCTCAAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880046 85 - 8458610 TTCAAAATGATCTCTTACTCCAGAAACTTCTCTGTTCTCAAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835758 85 + 75148670 TTCAAAATGATCTCTTATCCCAGAAACTTCTCTGTTCTCAAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059216 85 + 4244037 TTCAAAATGATCTCTTACTCCAGAAACTTCTCTGTTCTCAAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCCACAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087095 85 + 4569836 TTCAAAATGATCTCTTACTCCAGAAACTTCTCTGTTCTCAAACTAGTTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46055992 85 - 159171411 TTCAAAATGATCTCTTACCCCAGGAACTTCTCTGTTCTCAAACTAATTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778378 84 + 3513951 TTCAAAGTGCTCTCTTACCCCAGGAACTTCTCTGTTCT-AAACTAATTATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827249 83 + 1920343 TTCAAAATGATCTCTTACCCCTGGAACT--TCTGTTCTCAAACTAATGATCAAAGCCTCTATGTTTAAAATTCTCTCCTCTACAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939112 85 - 7032639 TTCAAAATGATCTCTTACCCCAGGAACTTCTCTGTTCTCAAACTAATCATCAAAGCCTCTACCTTTAAAATTCTCTCCTCTACAA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2947617 85 + 8555354 TTCAAAATGATCTCTTCCTCCAGAAACTCACTTATTCTCAAACTAATTATTGATGCCTCTACCTTTACAATTCTCTCCCCTACAA i proCoq1.NW_012135969v1 I 397 I 172 s mm10.chr11 22031319 64 - 122082543 TTAAAAACTGTCTCTTCTCTCAGAATCTTCTCTGTTCTCAAGGTTATCATCAAAGCCACTACCA--------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21364366 77 + 61074082 TTCCAAATGATCTCTTTCTCCAGAGCCTTAACTGTTCT----TTAATTATCAGAGCCTCTTCCTTTAAAA----CTCCTCTACAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 344794 79 - 852752 TTCAAAACTATCCCTTTCTCAGAAGGGATAATTGTTCTCAAATGAAAGATCAA-GCCTCTGCCTTT-----TCTCCCCTCCACAA i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35862836 626 - 65901067 I e otoGar3.GL873537 22745335 52766 + 28711273 I a score=1539705.000000 s hg38.chr17_GL383564v2_alt 34743 148 + 133151 TTTTCTTAAGTAATATGTGGTGGTGGG----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATCGCTGTCTAATCTTTTCAGTCGTGTCCTCCATTGATTCTAATCATCCACCTTAAGGCTTCCA--AGGCACAGAATGCTCCATCATTTGA s panTro5.chr17 16228643 148 + 83181570 TTTTCTTAAGTAATATGTGGTGGTGGG----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATCGCTGTCTAATCTTTTCAGTCATGTCCTCCATTGATTCTAATCATCCACCTTAAGGCTTCCA--AGGCACAGAATGCTCCATCATTTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136125 148 + 83442489 TTTTCTTAAGTAATATGTGGTGGTGGG----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATCGCTGTCTAATCTTTTCAGTCATGTCCTCCATTGATTCTAATCATCCACCTTAAGGCTTCCA--AGGCACAGAATGCTCCATCATTTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971128 147 + 4267968 TTTTCTTAAGTAATA-GTGGTGGTGGG----AGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATCGCTGTCTAATCTTTTCAGTCATGTCCTCCATTGATTCTGATCATCCACCTTAAGGCTTCCA--AGGCACAGAATGCTCCATCATTTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951267 148 - 2193130 TTTTCTTAAGTAATATGCGGGGGTGGG----GGGGAAGT-ATT-ATGCGGACCCATAAAA-------CACAAATTGCTGTCTAATCTTTTCAGTCACGTCCTCCATTGATTCTAGTCATCCACCTCAAGGCTTCCA--AAGCATGGAATGCTCCATCATTTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023818 148 - 77216781 TTTTCTTAAGTAGTATGCAGTGTTGGC----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATTGCTGTCTAATATTTTCATCCCTGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCCA--AGGCATGGAATGCTCCATCATTTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936414 148 - 80997621 TTTTCTTAAGTAATATGCAGTGTTGGC----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATTGCTGTCTAATATTTTCATCCCTGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCCA--AGGCATGGAATGCTCCATCATTTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992684 148 + 10377808 TTTTCTTAAGTAATATGCAGTGTTGGC----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATTGCTGTCTAATATTTTCATCCCTGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCCA--AGGCATGGAATGCTCCATCATTTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880131 148 - 8458610 TTTTCTTAAGTAATATGCGGTGTTGGC----GGGGAAGT-ATT-ACATGGACCCGTAAAA-------CACAAATTGCTGTCTAATATTTTCAACCATGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCCA--AGGCATGGAATGCTCCATCATTTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835843 148 + 75148670 TTTTCTTAAGTAATATGCGGTGTTGGC----GGGGAAGT-ATT-ACACGGACCCGTAAAA-------CACAAATTGCTGTCTAATATTTTCAACCATGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCCA--AGGCATGGAATGCTCCATCATTTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059301 148 + 4244037 TTTTCTTAAGTAATACGCGGTGTTGGT----GGGGAAGT-ATT-ACATGGACCCGTAAAA-------CACAAATTGCTGTCTAATATTTTCAACCATGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTCCCA--AGGCATGGAATGCTCCATCATTTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087180 148 + 4569836 TTTTCTTAAGTAATATGTGGTGTTGGC----GGGGAAGT-ATT-ACACGGACCCACAAAA-------CACAAATTGCTGTCTAATATTTTCAACCACGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCCA--AGGCATGGAATGCTCCATCATTTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056077 151 - 159171411 TTTTCTTAAGTAATATGCAGTGGTGGGGGCAGGGAAAGT-ACT-ACATAGACCCATAAAA-------CACAAATTGCTGTCCAATCTTTTCAGCCATGTCCTCCATTGATTCTAGTCATCTACCTTAAGGCTTCTA--AGATA-GGGATGCTCCAGCATTTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778462 153 + 3513951 TTTTCTTAAGTAATATGCAGTGGTGGGGGCAGGGGAAGT-ATTAACATAGACCCGTAAAC-------CACAAATTGCTGTCCAATCTTTTCAGCCATGTCCTCCATTGATTCTAGCCATCCACCTTCAGGCTTCTA--AGATATGGGATGCTCCAGCATTTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827332 152 + 1920343 TTTTCTTAAGTAATATGCAGTGGTGGGGGCAGGGGAAGT-ATT-ACACAGACCCGTTAAA-------CACAAATTGCTGTCCAATCTTTTCAGCCGTGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCTA--AGATATGGGATGCTCCAGCATTTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939197 152 - 7032639 TTTTCTTAAGTAATATGCAGTGGTGGGGGCAGGGGAAGT-ATT-ACATAGACCCGTAAAA-------CACAAATTGCTGTCCAATCTTTTCAGCCATGTCCTCCATTGATTCTAGTCATCCACCTTAAGGCTTCTA--AGATATGGGATGCTCCAGCATTTGA i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22031383 108 - 122082543 GTCTCTTAAGTGATA----------------AGAGAGGTCATT-ATGTGGTCCTGTAAAC-------TACAGAAAGCTCTCCAAACTTCACATCC-------------------------------AAGGCTTAGATCAAGCCTGGAAGGCTACAACATTTAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21364443 139 + 61074082 TCCCCGTACATgatataca----------------aatt-gtc-a-acaggcacatgaaaagatgGGCACAAATAGCTGCCCATCCTTCTCAGCCATGGTACAACTCAGTCCT---TATTCACCTCAAGGCTTCCA--ATGCTTGGGACGCTGTACCATTGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 344873 135 - 852752 TTCTTTTAGGTGATA----------------TAGGAGGC-ATT-GCACTGCCCCTTAAAA-------TACAACCAGCTTTTCAAAAATCTCAGCCATGGCTCAAGTCAAACCAGAACATTTACTTCAAGGTTTCCA--AGGTCTGTGG-GCTACAGCATTTAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2947702 172 + 8555354 I e micMur3.chr16 35862836 626 - 65901067 I e otoGar3.GL873537 22745335 52766 + 28711273 I a score=544021.000000 s hg38.chr17_GL383564v2_alt 34891 45 + 133151 AGATTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCCT s panTro5.chr17 16228791 45 + 83181570 AGATTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136273 45 + 83442489 AGATTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971275 45 + 4267968 AGATTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951415 45 - 2193130 AGATTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30023966 45 - 77216781 AGATTCTTCTTTAAAT-GAAGAGGGAAACACAGTCCACTGTGGCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936562 45 - 80997621 AGATTCTTCTTTAAAT-GAAGAGGGAAACACAGTCCACTGTGGCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992832 45 + 10377808 AGATTCTTCTTTAAAT-GAAGAGGGAAACACAGTCCACTGTGGCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880279 45 - 8458610 AGATTCTTCTTTAAAT-GAAGAGGGAAACACAGTCCACTGTGGCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64835991 45 + 75148670 AGATTCTTCCTTAAAT-GAAGAGGGAAAGACAGTCCACTGTGGCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059449 45 + 4244037 AGATTCTTCTTTAAAT-GAAGAGGGAAAGACAGTCCACTGTGGCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087328 45 + 4569836 AGATTCTTCTTTAAAT-GAAGAGGGAGAGACAGTCCACTATGGCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056228 45 - 159171411 AGACTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778615 45 + 3513951 AGACTCTTCTCTAAAT-GCAGAGGGAAAGACAGTCCACTGTGGCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827484 45 + 1920343 AGACTCTTGTCTAAAT-GCAGAGGGAAAGACGGTCCACGGTGGCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939349 45 - 7032639 AGACTCTTCTCTAAAT-GCAGAGGGAAAGATGATCCACTGTGGCCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35863462 45 - 65901067 AGATTCTTCTCTTAAT-GCACAGGGGAAGAGTGTCCACTGCTGCTG i micMur3.chr16 I 626 C 0 s mm10.chr11 22031491 43 - 122082543 AGAGTTTACTTTCATCAGAAGAAACAAGAGCTGATGGCTGTAA--- i mm10.chr11 C 0 C 0 s canFam3.chr9 21364582 39 + 61074082 GGATTCTTCCCTTAAA-GCAGATGGAAAGGGAGTTCACTG------ i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345008 45 - 852752 AGATTCTTTTCTTCAT-GCAGGTAGAAAGAGAGTCCACTGCTGCCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2947702 172 + 8555354 I e otoGar3.GL873537 22745335 52766 + 28711273 I a score=2451133.000000 s hg38.chr17_GL383564v2_alt 34936 171 + 133151 CTTAATGCAACTTCTTCCTCAAATCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAACGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGAATTATG-------TGACACAAAAGAATGTCATCGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC s panTro5.chr17 16228836 171 + 83181570 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAACGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATCGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136318 171 + 83442489 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAACGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATCGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971320 171 + 4267968 CTTAATGCAACCTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAATGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATCGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951460 171 - 2193130 CTTAATGCAACTTCTTCCTCGAACCGA------------------------------------------------------TCCGTGTTTCTCCCTAGAAATGGCAGGTGGACTAGGACATAAGTATGTTTATCAGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATGAGCACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024011 171 - 77216781 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAATGGCAGGTGGACCAGGACATGAGTATGTTTACGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936607 171 - 80997621 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAATGGCAGGTGGACCAGGACATGAGTATGTTTACGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1992877 171 + 10377808 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAATGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880324 171 - 8458610 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCCTAGAAATGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836036 171 + 75148670 CTTAATGCAACTTCTTCCTCGAACCAA------------------------------------------------------TCCGTATTTCTCCCTAGAAATGGCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059494 171 + 4244037 CTTAATGCAACTTCTTCCTCGAACCAA------------------------------------------------------TCTGTGTTTCTCCCTAGAAATGACAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087373 171 + 4569836 CTTAATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCTGTATTTCTCCCTAGAAATGGCAGGTGGACCAAGACATGAGTATGTTTATGGGCCTGCAGGATTATG-------TGACACAAAAGAATGTCATTGGATGGATCAACACCTCAATAAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056273 175 - 159171411 CCTGATGCAACTTCTTCCTCAGACCAA------------------------------------------------------TGCGTGTTTCTCCC---AAATGCCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGTAGGATTGTGACAAAATTATGATGAAAGAATGTCACTAGATGGACCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778660 175 + 3513951 CCTGGTGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCC---AAATGCCAGGTGGACCAGGACATGAGTATGCTTATGGGCCTGTAGGATTGTGACAAAGTTATGACGAAAGAACGTCACCGGATGGACCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGCCTGTGTCGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827529 175 + 1920343 CCTGATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCC---AAATGCCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGTAGGATTGTGACAAAATTATGACGAAAGAATGTCCCTGGACAGACCAACACCTCAATTAATGAGGGCAGAGACTTGGGCTGGACTGTGTAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939394 175 - 7032639 CCTGATGCAACTTCTTCCTCAAACCAA------------------------------------------------------TCCGTGTTTCTCCC---AAATGCCAGGTGGACCAGGACATGAGTATGTTTATGGGCCTGTAGAACTGTGACAAAATTATGACGAAAGAATGTCACTGGGTGGACCAACACCTCAATTAATGAGGGCAGATACTTGGGCTGGACTGTGTAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35863507 170 - 65901067 CTTAATGAAACTTCTTCCTTGAACTGA------------------------------------------------------TCTAGGTTTCTCCTTAGAAATGCCAGGTGGGCCAGGACATGAGCATGATTATGGGCCTGCAGGGTCATG-------GGACACAAAAGAATGTCACTGGATGGACCAACACC-CAATTAATGAGGGTAGATCCTTGGGCTGGCCTGGGTGGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2947874 170 + 8555354 CTTAATGAAGCTTCTTCCTTGAACCAA------------------------------------------------------TCTATGTTTCTCCCTAGAAATGCCAGGTGGGCCAGGACGTGAGTATGATTATGGGCCTGTAGGATCACG-------TGACACAAAAGAATGTCATTGGACGGACCAACACC-CAATTAATGAGGGTAGATCCTTGGGCTGGACTGTGTGGC i proCoq1.NW_012135969v1 I 172 C 0 s mm10.chr11 22031534 212 - 122082543 CTGAATGTATCTTCTTTCTccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaTTtctctctctctctctctctctctctctctctctctctctcAGGATAGGGCATTAGGTTGATTGTGAGTCTTCAGGATCTTG-------TAACACAAAAGAATGTCACTGGATGGACCAACACC-CAACTGA------------CCAGGGCTGGGCCATGTGAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21364621 163 + 61074082 -------AAACTTCTTCTTTGACTCAA------------------------------------------------------TCCCCGTCCCTCCCTAGAAACGCCAGGTGGGCCAGGAAATGAGTCTGAGTATGGGTTTACAGGATCACA-------TAACACAGAAGAATGTCATTGGATGGACCAAC-TCTCAATTAACAAGGGTAGATACCTGGGCTAGACTGTGTGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345053 141 - 852752 CTGAATGCAACTTCTTCTTTGAGTCAA------------------------------------------------------TCCCAGTCTCAATTTAGAAATACCAAGTGGGCCAGGAGATGAGTCTGATTATGGGCCTACAG-----------------------------------GATGGGCCAACACC-CAATTAACGAGGGCACATTCTTGGGCTGGA-TGTGTGGC i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22745335 52766 + 28711273 I a score=6302191.000000 s hg38.chr17_GL383564v2_alt 35107 354 + 133151 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGAGAAGGGACTCTTCAGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACTATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA s panTro5.chr17 16229007 354 + 83181570 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGAGAAGGGACTCTTCAGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACTATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136489 354 + 83442489 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGTGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGAGAAGGGACTCTTCAGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACTATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971491 354 + 4267968 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGAGAAGGGACTCTTCAGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACTATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951631 354 - 2193130 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGAGAAGGGACTCTTCAGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACAAACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGACATCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTTAGCCAGGCA-CTCACTCCCTCCCTCCCTGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024182 354 - 77216781 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27936778 354 - 80997621 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-TTCGCTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993048 354 + 10377808 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACCTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880495 354 - 8458610 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836207 354 + 75148670 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAGGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAAACCCACAG-CTCTGTGGCTTGAAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2059665 354 + 4244037 CTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087544 354 + 4569836 CTCTTTGAAGGCCTACCACAGAAGTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAGGAATTTTATGGGGCAAGGGCCTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAAGAAGTGAAGAAATAAAAAGAAAAAA------GACACTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCTACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCCCTCCCTCCCTCCCAGCACCATGCCCTACAACTTCTGCCTGCCCAGCCTGAGCTGCCGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056448 354 - 159171411 TTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACGAGGGACTCTTCTGAGGAAAGCAAATAACAGACTGAAGGAAAGGGTGTTTGAAAAGAAGTGTAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGGA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGTTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACAATGCCCTACAACTTCTGCCTCCCCAGCCTGAGCTGCCGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1778835 354 + 3513951 TTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGGATGGACTGTCTGTGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGTGTTTGAAAAGAAGTATAGAAATAAAAAGACAAAA------GACATTGCATACTGCGTCCACACCCTCTGCAGTGGGA-TATAAATGCT-CCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTCAGACTCTGTCTTCAGCCAGGCA-CTCACTTCCTCCCTCCCAGCACGATGCCCTACAACTGCTGCCTGCCCAGCCTGAGCTGCCGCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1827704 354 + 1920343 TTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCGGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGTGTTTGAAAAGAAGTGTAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCTGCAGTGGAA-TATAAATGCTCCCTAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAATTTAGACTCTGTCTTCAGCCAGGCA-CTCACTTCCTACCTCCCAGCACGATGCCCTACAACTTCTGCCTCCCCAGCCTGAGCTGCCGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939569 354 - 7032639 TTCTTTGAAGGCCTACCACAGAACTCTGATTTCATGGG-TGGACTGTCTGCAGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACGAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGTGTTTGAAAAGAAGTGTAGAAATAAAAAGAAAAAA------GACGTTACATACTGTGTCCACACCCTCTGCAGTGGAA-TATAAATGCTCCCTAGAGGAAGGAGACCCACTG-CTCTGTGGCTTGGAGATTTTAGACTCTGTCTTCAGCCAGGCA-CTCACTCCCTCCCTCCCAGCACAATGCCTTACAACTTCTGCCTCCCCAGCCTGAGCTGCCGCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35863677 349 - 65901067 CCCTTTGAAGGTATACCGCAGAGCTCTGATTGCATGGG-TGTACTGCCTGAAGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAACCAGTGAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCCACAG-GGGG-TATAAATGCTGGGCAGAGGAAGGAGACCCACAG-CTCTGCGGCTTGGAGAACTCAGACCTTGTCTTCAGCCGGGCA-CGCG----CTCCCTCCCAGCACCATGTCCTACACCTGCTTCCTGCCCAGCTTCAGCTGCCGCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2948044 349 + 8555354 CCCTTTGAAGGTCTACCGCAGAACACTGATTGCATGGG-TGTACTGCCTGAAGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGAAGGAAAGGGCGTTTGAAAACCAGCAAAGAAATAAAAAGAAAAAA------GACATTACATACTGTGTCCACACCCTCCAAAG-GGGG-TATAAATGCTGGGCAGAGGAAGGAGACCCACAG-CTCTGTGGCTTGGAGAACTCGGACCCTGTCTTCAGCCAGGCA-CACG----CTCCCTCCCAGCACCATGTCTTACACCTGCTTCCTGCCCAGCCTCAGCTGCCGCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22798101 351 + 28711273 CTCTTTGAAGCCACACCGTGAAGCTCTTACGTCAT-GA-CACGCAGCAGGGA-AGGAGTCCTGACTTAGCGAGAAGCCCAAGTGGAGTCTTTTATGAGGGGAGGGACTCTTCTGA-GCAGACACATAACAAATGGAGGGGAAGGGCTTTTGATAATCAACAAATAAGAAAAAAAAAAAAAAAGGAGGGGGTTGCCTCACCTGTCCACACCCTCTGCAG-GGGG-TATAAATGCTCAACCGAGGACGGACACCCACAG-CTCTGAGGCTTGGAGAACCC-GACTCTGTCTTCAGCCCGGCA-CTCG----TTCCCTCCCAGCACCATGTCTTACTCCTGCGTCCTGCCCAGCCTCGGCTGCCGCA i otoGar3.GL873537 I 52766 N 0 s mm10.chr11 22031746 355 - 122082543 TTCTTTGAAGGGCTACTGCAGAACTCTG-TTTCATGGG-TGCAATGGCTGAAGAAGAGTCCTGACTTGGCAAGAAGCTCAAGTAAAGAATTTTATGGGACCAGGGACTCTTCTGAGGGAAGCAAATGACAGACTGAAGGAGAGGGCGTCTGAAAACCAGTGAAGAAGTACAAAGAAAAAAA-----GATGTTACATACTGTGTCCACACCCTCTGTAGAAGGCTTATAAAGTCTCACCAAGGGAAGGAGACTCAGAG-CTCTGAGGCTTGGAGAATTCACACCGAGTCTTCAGCCAGGTACCTCTCTCCCTCCCT-CCAGCACCATGCCATACAATTGCTGCCTGCCGGCCCTGAGCTGCCGCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21364784 346 + 61074082 CTCTTTTAAGATCTACCACAAAACTCTGATTTTATGGG-TATACTGCCTGAAGAGGAGTCCTGACTTAGCAAGAAGCCCAAGTAAAGAATTTTATGGGACAAGGGACTCTTCTGAGGAAGGCAAATAACAGACTGA-GGCACGGGCATTTGAAAACCAGAGAAGACAGAGAAAGAAAAAA------GACATTACATACCTCGTCCACACCCTCTGTGGAGGAAATAtaaatactccccagagaaaggaattccacaa-----gttccttggagaacttgggctctgtgtttagcCAGGTG-C---CTTGCTCCCT-CCAGCACCATGCCTTACAACTGCTGCCTGCCCAACCTGAGCTGCCGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345194 346 - 852752 CTCTTTGAAGGTCTACCACAAAACTCTGATTTCATGGG-TCTACTGCCTAAAGAGGAGTCCTGACTCTGCAAGAAGCCCAAGTAAAGAATTTTATGGGATGAGGGACTCTTCTGAGGAAAGCAAATACCAGATTGAAGGGACTGGCATTTGCAAACAAGTAAAGAAGTAAAAAGAAAAAA------GACAC-ACATACTGTGTCCACACCCTCTGTGGAGAGG-TATAAATGCTCCCCAGAAGAAGGAGATGCACAAACTC-----CCAGGAGAACCAGGACTCTTCCTCCTTCCAGGCA-C---CGCAAACCCTGCCAGCGCCATGTCGTACAACTGCTGCCTGCCCAACCTGAGCTGCCGCA i dasNov3.JH570468 C 0 C 0 a score=61110.000000 s hg38.chr17_GL383564v2_alt 35461 3 + 133151 CCA s panTro5.chr17 16229361 3 + 83181570 CCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136843 3 + 83442489 CCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971845 3 + 4267968 CCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951985 3 - 2193130 CCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024536 3 - 77216781 CCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937132 3 - 80997621 CCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993402 3 + 10377808 CCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880849 3 - 8458610 CCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836561 3 + 75148670 CCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060019 3 + 4244037 CCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087898 3 + 4569836 CCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056802 3 - 159171411 CCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779189 3 + 3513951 CCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1828058 3 + 1920343 CCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6939923 3 - 7032639 CCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864026 3 - 65901067 CCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2948393 3 + 8555354 CCA i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22032101 3 - 122082543 CCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21365130 3 + 61074082 CCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345540 3 - 852752 CCA i dasNov3.JH570468 C 0 C 0 a score=399546.000000 s hg38.chr17_GL383564v2_alt 35464 19 + 133151 GCTGCTCCTC-CCGGCCCTG s panTro5.chr17 16229364 19 + 83181570 GCTGCTCCTC-CCGGCCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136846 19 + 83442489 GCTGCTCCTC-CCGGCCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971848 19 + 4267968 GCTGCTCCTC-CCGGCCCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1951988 19 - 2193130 GCTGCTCCTC-CCGGCCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024539 19 - 77216781 GCTGCTCCTC-CCGGCCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937135 19 - 80997621 GCTGCTCCTC-CCGGCCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993405 19 + 10377808 GCTGCTCCTC-CCGGCCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880852 19 - 8458610 GCTGCTCCTC-CCGGCCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836564 19 + 75148670 GCTGCTCCTC-CCGGCCCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060022 19 + 4244037 GCTGCTCCTC-CCGGCCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087901 19 + 4569836 GCTGCTCCTC-CCGGCCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056805 19 - 159171411 GCTGCTCCTC-CCGGCCCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779192 19 + 3513951 GCTGCTCCTC-CCGGCCCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1828061 19 + 1920343 GCTGCTCCTC-CCGGCCCTG i cebCap1.NW_016107730v1 C 0 I 6723 s aotNan1.NW_018502359v1 6939926 19 - 7032639 GCTGCTCCTC-CCGGCCCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864029 19 - 65901067 GCTGCTCCTC-CCGGCCCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2948396 19 + 8555354 GCTGCTCCTC-CCGGCCCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22665498 20 + 28711273 GCTGGGCCTCTCTGGCCTTG i otoGar3.GL873537 N 0 C 0 s mm10.chr11 22032104 19 - 122082543 GCTGCTCCTC-CCGGCCCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21365133 19 + 61074082 CCTGCTCCTC-CCGGCCCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345543 19 - 852752 GCTGCTCCTC-TCGGCCCTG i dasNov3.JH570468 C 0 C 0 a score=1075198.000000 s hg38.chr17_GL383564v2_alt 35483 57 + 133151 CGTGCCCCCCAGCTGC--CACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA s panTro5.chr17 16229383 57 + 83181570 CGTGCCCCCCAGCTGC--CACAGCTGCACCCTGCCTGGGGCCTGCAACATCCCCGCCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136865 57 + 83442489 CGTGCCCCCCAGCTGC--CACAGCTGCACCCTGCCTGGGGCCTGCAACATCCCCGCCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971867 57 + 4267968 CGTGCCCCCCAGCTGC--CACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952007 57 - 2193130 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTGCCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024558 57 - 77216781 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTACCCGGGGCCTGCAACATCCCTGCCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937154 57 - 80997621 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTACCCGGGGCCTGCAACATCCCTGCCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993424 57 + 10377808 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTACCCGGGGCCTGCAACATCCCTGCCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880871 57 - 8458610 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTACCCGGGGCCTGCAACATCCCTGCCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836583 57 + 75148670 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCGCCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060041 57 + 4244037 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTACCCGGGGCCTGCAACATCCCTGCCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087920 57 + 4569836 CGTGCCCCCCAGCTGC--CATGGCTGCACCCTACCCGGGGCCTGCAACATCCCCGCCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056824 57 - 159171411 CGTGGCCCCCAGCTGC--CACAGCTGCACCCTGCCTGGGGCCTGCAACATCCCTGCCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779211 57 + 3513951 CGTGCCCCCCAGCTGC--CACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834803 57 + 1920343 CGTGGCTCCCAGCTGC--CACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA i cebCap1.NW_016107730v1 I 6723 C 0 s aotNan1.NW_018502359v1 6939945 57 - 7032639 CGTGCCCCCCAGCTGC--CATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864048 57 - 65901067 CGTGCCCCCCAGCTGC--CACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2948415 57 + 8555354 CGTGCCCCCCAGCTGC--CACACCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAA i proCoq1.NW_012135969v1 C 0 T 76468 s otoGar3.GL873537 22665518 53 + 28711273 GGAGCTGCTGGCCTGCCTCCCACCTGTCCTCTG---GGTGC---CAACCCTCCAGCTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22032123 57 - 122082543 TGTGCCCCCCAGCTGC--CATGGCTGCACCCTGCCTGGGGCCTGCAACATCCCCGCCAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21365152 57 + 61074082 CGTGCCCCCCAGCTGC--CACACCTGCACCCTGCCTGGGGCCTGCAACATCCCCGCCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345562 57 - 852752 CGTGGCCCCCAGCTGC--CACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTGCCAA i dasNov3.JH570468 C 0 C 0 a score=3217001.000000 s hg38.chr17_GL383564v2_alt 35540 182 + 133151 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGTAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAAGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCTCAGCAGCAGGAGCCCTTGCTGTGCC s panTro5.chr17 16229440 182 + 83181570 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16136922 182 + 83442489 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3971924 181 + 4267968 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAA-GTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952064 182 - 2193130 TGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTTCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAAAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024615 182 - 77216781 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937211 182 - 80997621 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993481 182 + 10377808 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAGCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1880928 182 - 8458610 TGTGAGCAACTGCAACTGGTTCTGTGAGGGTTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAATGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAGCCTCATCCGGGAGCGGTCCCAACAGCAGGAGCCCTTGCTGTGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836640 182 + 75148670 TGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCTTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060098 182 + 4244037 TGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAGCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2087977 182 + 4569836 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAATGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAAAATGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46056881 182 - 159171411 TGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGCACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779268 182 + 3513951 CGTGAGCAACTGCAACTGGTTCTGCGAGGGATCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGCACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834860 182 + 1920343 CGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTggagaaggtgcgtcagctggagcgggagaacgcggagctggagcgCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGTG i cebCap1.NW_016107730v1 C 0 T 4302 s aotNan1.NW_018502359v1 6940002 182 - 7032639 CGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAATTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCAGAGCTGGAGCACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864105 182 - 65901067 TGTGGGCAGCTGCAACTGGTTCTGCGAAGGCTCCTTCAATGGCAGGGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCGGCTGGAGCGGGAGAACGCGGAGCTGGAGAACCTCATCCAGCAGCGGTGCCAGGAGCAGGACCCCTTGGTGTGTG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22665571 181 + 28711273 GGTGGG-AGTGGGGGCTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCGGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGGCAGCTGGAGCGGGAGAACGCGGAGCTGGAGGGCCGCATCCGGGAGTGGTGTGAGTCTCAGGTCCCATACACCTGCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22032180 182 - 122082543 TGTGGGCAACTGCAATTGGTTCTGTGAGGGCTCCTTCAATGGCAATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTATATGGAGAAGGTGAGGCAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAGGATCCAGGAGAGGAACCAGCAGCAGGACCCCCTGGTGTGTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21365209 182 + 61074082 TGTGGGCAACTGTGGCTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGAGCCGCATCCGGGAACGGTGCCAGCAGCAGGAGCCCTTTGTGTGCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345619 182 - 852752 TGTGGGCACCTGTGGCTGGCTCTGTGAGGGCTCCTTCAATGGCAACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAGAATGCAGAGCTGGAGGGCCGCATCCATGAATGGTGCCAGCAGCAGGTGCCCTTCGTGTGCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T a score=869482.000000 s hg38.chr17_GL383564v2_alt 35722 56 + 133151 CCAGTTACCAGTCCTATTTTAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGCGGC s panTro5.chr17 16229622 56 + 83181570 CCAGTTACCAGTCCTATTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGCGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16137104 56 + 83442489 CCAGTTACCAGTCCTATTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGCGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3972105 56 + 4267968 CCAGTTACCAGTCCTATTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGCGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952246 56 - 2193130 CCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGCAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024797 56 - 77216781 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTTCAGCAGAAGGTGAGGGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937393 56 - 80997621 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTTCAGCAGAAGGTGAGGGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993663 56 + 10377808 CCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAGGGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1881110 56 - 8458610 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTTCAGCAGAAGGTGAGGGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836822 56 + 75148670 CCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060280 56 + 4244037 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTTCAGCAGAAGGTGAGGGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2088159 56 + 4569836 CCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46057063 56 - 159171411 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779450 56 + 3513951 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6940184 56 - 7032639 CCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864287 56 - 65901067 CCAACTACCAGTCCTACTTCCGGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22665752 55 + 28711273 CGGACTACCAGTCCTACTTCAAGACCATTGAGGACTTCCAGCAGAAGGT-AGTGGC i otoGar3.GL873537 C 0 N 0 s mm10.chr11 22032362 56 - 122082543 CTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGTTGCAGCAGAAGGTGAGTGGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21365391 56 + 61074082 CCAGCTACCAGTCCTACTTCCGGACCATTGAGGAGCTCCAGCAGAAGGTAAGGGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 345801 56 - 852752 CGGACTACCAGTCCTACTTCCGGACCATCGAGGAGCTGCAGCAAAAGGTGAGGGGT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=457188.000000 s hg38.chr17_GL383564v2_alt 35778 38 + 133151 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- s panTro5.chr17 16229678 38 + 83181570 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16137160 38 + 83442489 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3972161 38 + 4267968 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952302 38 - 2193130 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024853 38 - 77216781 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCAGTGATT-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937449 38 - 80997621 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCAGTGATT-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993719 38 + 10377808 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCAGTGATT-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1881166 38 - 8458610 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCAGTGATT-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836878 38 + 75148670 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060336 38 + 4244037 ATTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCAGTGATT-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2088215 38 + 4569836 GTTGCTGTCATCTCCAAGCAA--GA-GAGT------TTGCTGTGATT-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46057119 38 - 159171411 ATGGCTGTCATCTCGAAGCAA--GA-GAGT------TTGCTGTGATT-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779506 38 + 3513951 ATGGCTGTCATCTCGAAGCAA--GA-GAGT------TTGCTGTGATT-- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6940240 38 - 7032639 ATGGCTGCCATCTCGAAGCAA--GA-GAGT------TTGCTGTGATT-- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864343 39 - 65901067 CTTGCTGCCATCTCCAAGCAA-GGG-GAGT------TCGCTGTGATT-- i micMur3.chr16 C 0 I 2 s otoGar3.GL873537 22798806 46 + 28711273 CTTGCTGCCTTTAGTAGGCGACAGA-GTGTGTGCTCTTGCTGCGACT-- i otoGar3.GL873537 N 0 N 0 s mm10.chr11 22032418 39 - 122082543 TTTCTTGTTCTGTCTAAGTAA-TGG-CAAC------TTGCTAAGGTT-- i mm10.chr11 C 0 I 2 s canFam3.chr9 21365447 39 + 61074082 TTTGTTGTTTTCCCTGAGCAA--GAGGAGT------TTGCTATGATT-- i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 345857 39 - 852752 CTTGCTGTCATCTTTAAGTAA--GA-AAG-------TTGCCATGATTAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=1574462.000000 s hg38.chr17_GL383564v2_alt 35816 134 + 133151 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGGCTT---AAGTCATTTTT----AAAAAGTTGATGATTTCATATTTATTTTCAGTCCTCACTAAGCCA s panTro5.chr17 16229716 134 + 83181570 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCCGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGGCTT---AAGTCATTTTT----AAAAAGTTGATGATTTCATATTTATTTTCAGTCCTCACTAAGCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16137198 134 + 83442489 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGGCTT---AAGTCATTTTT----AAAAAGTTGATGATTTCATATTTATTTTCAGTCCTCACTAAGCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3972199 131 + 4267968 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCGTAATTCTTGCTTCCT-TTTTA--TTTCAAAATGGCTT-----GTCGCTTTT----AAAAAGTTGATGATTTAATATTTATTTTCAGTCCTCACTAAGCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952340 134 - 2193130 CT--GTCTGTGATAGAGAAG-GATATTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGGCTT---AAGTCATTTTT----AAAAAGTTGATGATTTCATGTTTATTTTCAGTCCTCACTAAGCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30024891 137 - 77216781 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTCATATTTATTTTCAGTCCTCACTAAGCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937487 137 - 80997621 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTCATATTTATTTTCAGTCCTCACTAAGCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993757 137 + 10377808 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTCATATTTATTTTCAGTCCTCACTAAGCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1881204 137 - 8458610 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTGATATTTATTTTCAGTCCTCACTAAGCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64836916 138 + 75148670 CT--GTCTGTGATAGAGAAG-TGTGTTTCTTTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTCATATTTATTTTCAGTCCTCACTAAGCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060374 137 + 4244037 CT--GTCTGTGATAGAGAAG-TGTGCTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTGATATTTATTTTCAGTCCTCACTAAGCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2088253 137 + 4569836 CT--GTCTGTGATAGAGAAG-TGTGTTTC-TTGCTTCTGTGCTGTCATAATTCTTGCTTCCACTTCTA--TTTCAAAATGTCTTTTTAAGTCATTTTT----AAAAAGTTGATGATGTCATATTTATTTTCAGTCCTCACTAAGCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46057157 139 - 159171411 CTCCGTCTGTGATAGAGAAG-CGTGTTTC-TTGCTTCTGTACCGTCATAATTCTTGCTTCCTCCTCTA--TTTCAAAATGGCTTTTTAAGTCATTTTT----AAAAAGTTTATGGTTTCATATTTATTTTCAGTCCTCACTAAGCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779544 139 + 3513951 CTCCGTCTGTGATAGAGAAG-CGTGTTTC-TTGCTTCTGTGCTATCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGCCTTTTTAAGTCATTTTT----AAAAAGTTGATGGTTTCATATTTATTTTCAGTCCTCACTAAGCAA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6940278 139 - 7032639 CTCCGTCTGTGATAGAGAAG-CGTGTTTC-TTGCTTTTGTGCCGTCATAATTCTTGCTTCCTCTTTTA--TTTCAAAATGGCTTTTTAAGTCATTTTA----AAAAAGTTGATGGTTTCATATTTATTTTCAGTCCTCACTAAGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864384 135 - 65901067 CA--ATCTGTAATAGACAAG-TGTGTTTC-TTGCTCCTATGCTGTTATAATTCTTGC--CCTTTCTAC--CTTCAAAATGGCTTTATAAGTCATTTAA----AAGAAATTGGTGACTTCACATTTATTTTCAATCCTCACTAAGAAA i micMur3.chr16 I 2 C 0 s mm10.chr11 22032459 117 - 122082543 CA--GCTTGTAGTAGAGAAG-TA---TCC-ATGCTTTT--------------------CCATTTCCTC--CCTCAAAATAACTCTGCAAGCCATTTTTTTTAAAGCAGTTGATGGTTTTATATTAATTTTCA-TGCTCACTAATTAT i mm10.chr11 I 2 I 5 s canFam3.chr9 21365488 138 + 61074082 CA--ATCTGTAGTAGAGAAG-TGTGTTTC-TTACTTCTATGCCATCGTGATTCTTGCTTCCCCCTTGA-CCTTCAAAATGGGTTTTTAGGCCATTTTA----AAGAAGTTGGTGATTTCATATTTGTTTTCAGTTCTCACTAAGCAC i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 345896 140 - 852752 CA--ATCTTAAGCCAAGAAGTTGTGTTTC-TTGTTTCTGTGTTATCATGTCCCTTCTTTCCCCTTTCTACCTTCAAAATGGCTTTTAAAAACATTTCA----AAGAAGTTGATGTTTTCATATTTATTTTCAATCCTCTGTGAGCAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=2076898.000000 s hg38.chr17_GL383564v2_alt 35950 139 + 133151 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCAATTGCTTC-TGT s panTro5.chr17 16229850 139 + 83181570 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTTGGAA----TTTGCACTAGTG-TCCATTGCTTC-TGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16137332 139 + 83442489 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTTGGAA----TTTGCACTAGTG-TCCATTGCTTC-TGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3972330 139 + 4267968 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTGCTTC-TGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952474 139 - 2193130 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30025028 139 - 77216781 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937624 139 - 80997621 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1993894 139 + 10377808 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1881341 139 - 8458610 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64837054 139 + 75148670 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060511 139 + 4244037 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2088390 139 + 4569836 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCCGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCTGCGGATGATTTCAGAACCAAGTGAGT-----TGTTCGGAA----TTTGCACTAGTG-TCCATTTCTTC-TGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46057296 139 - 159171411 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATTGACAACGCCAAGCTGGCTGCGGATGACTTCAGAACCAAGTGAGT-----TGTTTGGAA----TTCGCACTAGTG-TCCATTTCTTC-TGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779683 139 + 3513951 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATTGATAACGCCAAGCTGGCCGCGGATGACTTCAGAACCAAGTGAGT-----TGTTTGGAA----TTCACACTGGTG-TCCATTTCTTC-TGT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6940417 139 - 7032639 CCTCTCACTCCCCAGATCCTGTGTACCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATTGACAACGCCAAGCTGGCTGCGGATGACTTCAGAACCAAGTGAGT-----TGTTTGGAA----TTCGCACTAGTG-ACCATTTCTTC-TGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864519 139 - 65901067 CCTCTTGCTCCCCAGATCCTGTGCACCAAGTCTGAGAACGCCAGGCTGGTGGTGCAGATTGACAACGCCAAGCTGGCCGCTGACGACTTCAGGACCAAGTGAGT-----TGTTTGGAA----TTCGCACTGGTG-TCTGTTCCTCT-TGT i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22666419 149 + 28711273 CCTCTTGTTCCCCAGATTCTGCTGACCAAATCTGAGAATGCCAGGCTGGTCCTGCAAATTGACAATGCCAAGCTGGCGGCTGATGACTTCCGGACCAAGTGAGTGGGCCTGGTTGGGGAAGTTTTGCTGTGTCGCTCCTTTGCCTC-TGT i otoGar3.GL873537 N 0 I 80689 s mm10.chr11 22032581 134 - 122082543 TCTCTCCTTCCTCAGATCCTGTGCAGCAAATCAGAGAATGCCAGGTTGGTGGTGCAGATAGATAATGCCAAGCTGGCTGCAGACGACTTCAGGACCAAGTGAGT-----TATTCAGCA----TCCACACTAGCA-TCCTTTGGT------ i mm10.chr11 I 5 C 0 s canFam3.chr9 21365626 137 + 61074082 CCTCTCATTCACCAGATCCTGTGCACCAAGTCTGAGAATGCAAAGCTGGTGGTTCAGGTTGACAATGCCAAGCTGGCTGCTGATGATTTCAGAACCAAGTGAGT-----AGTTCAGAA----TC--CACTGGTG-TCCACTCCTTT-TGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 346036 140 - 852752 CCTCTCTTTCCCTAGATCCTGTGCTCCAAGTCTGAGAATGCCAGGCTTGTGGTACAGATTGACAATGCTAAGCTGGCTGCAGATGACTTCAGAACAAAGTGAGT-----TGCCCAGAA----TTAGCCCTGGTG-TCCACACCTTTGTGT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=2104460.000000 s hg38.chr17_GL383564v2_alt 36089 184 + 133151 TTAATCTTTAA----AGAAAAGGGATTTCCAT-------CTG-AAAA-CAGATC-TACCCACTTGTTGTGAAGGATTCTGCAGAGGACTGGGGAGAACCA-AGCAAAGAAAT-GCAAAAATGGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT s panTro5.chr17 16229989 184 + 83181570 TTAATCTTTAA----AGAAAAGGGATTTCCAT-------CTG-AAAA-CAGATC-TACCCACCTGTTGTGAAGGATTCTGCAGAGGACTGGGGAGAACCA-AGCAAAGAAAT-GCAAAAATGGATGAGGACTCACATCAATCTGTTTATTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16137471 184 + 83442489 TTAATCTTTAA----AGAAAAGGGATTTCCAT-------CTG-AAAA-CAGATC-TACCCACCTGTTGTGAAGGATTCTGCAGAGGACTGGGGAGAACCA-AGCAAAGAAAT-GCAAAAATGGATGAGGACTCACATCAATCTGTTTATTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3972469 184 + 4267968 TTAATCTTTAA----AGAAAAGGGATTTCCAT-------CTG-AAAG-CAGATC-TACCCACTTGTTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAAT-GCAAAAACAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952613 191 - 2193130 TTAATCTTCAA----AGAAAAGGGATTACCATGGCTGTACTG-AAAG-CAGATC-TACCCACCTGTTGTGAAGGATTCTGCAGAGGACTGGGGAGAACCA-AGCAAAGAAAT-ACAAAAATAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAACCCTCAGAAACCTCTGTCTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30025167 197 - 77216781 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACTTGCTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937763 197 - 80997621 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACTTGCTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1994033 197 + 10377808 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACTTGCTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAACAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGGATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1881480 197 - 8458610 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACTTGCTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64837193 196 + 75148670 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAACCAGATC-TACCCACTTGCTGTGAAGGATTCTGC-GAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTATCTCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060650 197 + 4244037 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACTTGCTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCACATCAATCTGTTTGTTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2088529 198 + 4569836 TTAATCTTTAGTTACAGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATCTTACCCATTTGCTGTGAAGGATTCTGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCAGATCAATCTGTTTATTTTGGGATGAATATTGGGTATTGATGGAGCCTCCAGAAACCTCTGTCTCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46057435 189 - 159171411 TTAGTCTTTAA----AGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACCTGCTGTGAAGGATTCGGCAGAGGACTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCAAATCAATCTG----TCTTGAGATGAATATTGGGTATTGATGGAGCCTCCGGAACCCTCTGTCTCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1779822 190 + 3513951 TTAGTCTTTAA----AGAAAAGGGATTTCTATGGCTGTACTGAAAAAACAGATC-TACTTACCTGTTGTGAAGGATCCTGCACAGGGTTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCAAATCAACCTG----TTCTGAGATGAATATTGGGTATTGACGGAGCCTCCAGAACCCTCTGTCTCCT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6940556 189 - 7032639 TTAGTCTTTAA----AGAAAAGGGATTTCCATGGCTGTACTG-AAAAACAGATC-TACCCACCTGTTGTGAAGGATTCCGCAGAGGATTGGGGAGAACCA-AGCAAAGAAATCACAAAAATAGATGAGGACTCAAATCAATCTG----TTTTGAGATGAATATTGGGTATTGATGGAGCCTCCAGAACCCTCTGTCTCCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864658 192 - 65901067 TTAACCTCTAGTTTTAAAAAAGGGATTTCTTCAACTTTGCTG-AAGAACAGATC-AACCCATCAATTGTGAAGAATTCCGCAGAGGATTGTGAAGAACCT-AGCAAAGGAATCGCAAAAGTAGATGAGAACTCAAATCAATCTG-----TTTGAGGCAAACATTGGGTTTTGATTGAGGCTCCAGAAATCTCTGTCTCCT i micMur3.chr16 C 0 C 0 s mm10.chr11 22032715 145 - 122082543 TTAACGTCTAGTTA-AAGAAAGGGATTTCCA------------AAGAGCAGA-C-AAAATGTCATCTGCAAAAGATGTTGG--------GGGCAGAACCAGGGAAAAGGAATCAGGAAAATGGAAAGGAGC---------------------------GACGTTGGGTTTTGATGGAGCATCCAGAACTCCCTGT----- i mm10.chr11 C 0 C 0 s canFam3.chr9 21365763 191 + 61074082 TTAGTTTCCAGTTAAAGGAAAGGGGTGTCCATAACTTTACTG-AACAACAGTTC-CATCCATTGGTTATGAAGCATTCTGTAGA-GATTGAGGGGAACCA-AAC-AAGGAATCACAAAAATAGATGAGGACGCA----AATCTGTTTATTTTTGGAGCAATATTTGGTCTGGACTGAGCCTCCAGAACCCTCTGTCTCCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 346176 189 - 852752 TTAATGTCTCA----AGAAGAGGGATTTCCATAGCT-TACTG-AATAACAGACC-AATCCATTGGTTGTGAAGGAATCTGCAGAGGATTGGGAA-AACGA-ACAAAGGGAATCACAAAAATAGATGAGCTCTCAAACCAACCTGTTAAATTTTGGATCAATATGGGGTCTTAACTGAGCCTCCAGAG--CTCTGTCTCCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e otoGar3.GL873537 22666568 80689 + 28711273 I e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=7384580.000000 s hg38.chr17_GL383564v2_alt 36273 566 + 133151 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTCTTGAAGATC-------TACCA----GGTAGTACTCTGACCCTGTCCTTGCGCAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGGCTCAGGGTTGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTATGAGTACAAGACTGAGG------------GTTTCCTTTGAAA--------ACA--------TCACGGTAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTATTTGAGTTGCCCGGAGCAGCTCCATGTGCTTGCAGTTGATCAAT-AGTTGTAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGTAAAGTC s panTro5.chr17 16230173 566 + 83181570 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTCTTGAAGACC-------TACCA----GATAGTACTCTGACCCTGTCCTTGCACAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTAGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTAGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGGCTCAGGGTAGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTATGAGTACAAGACTGAGG------------GTTTCCTTTGAAA--------ACA--------TCATGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTATTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGCAGTTGATCAAC-AGTTGTAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGTGAAGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16137655 566 + 83442489 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTCTTGAAGACC-------TACCA----GGTAGTACTCTGACCCTGTCCTCGCACAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTAGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCTGACCTAGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGGCTCAGGGTAGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTATGAGTACAAGACTGAGG------------CTTTCCTTTGAAA--------ACA--------TCATGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTATTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGCAGTTGATCAAC-AGTTGTAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGTGAAGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3972653 565 + 4267968 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTCTTGAAGATC-------TACCA----GGTAGCACTCTGACCCTGTCCTTGCGCAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGGCTCAGGGTGGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTACGAGTACAAGACTGAGG------------GTTTCCTTTGAAA--------ACA--------TCACGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAA-ATCTTTCACTTTAAACTAGCACATTATTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGCAGTTGATCAAC-AGTTGTAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGTAAAGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1952804 566 - 2193130 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTCTTGAAGATC-------TACCA----GGTAGTACTCTGACCCTGTCCTTGTGCAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAACTGACCCTGTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCACGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGGCTCAGGGTAGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTATGAGTACAAGTCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCACAGCAAGAGAAAAA-TTGGAGAGAGATAATACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCATTTTAAACTAGCATATTATTTGAGTTGCTCAGAGCAGCTCCATGTGCTTGAAATTGATCAAC-AGTTGTAGAATGAGTCCTAACACTGCAGTGTTATTGCTTTGCAAAGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30025364 566 - 77216781 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTGTTGAAGATC-------TACCA----AGTAGTGCTCTGACCCGCTCCTTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGTAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCACGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGACTCAGGGTAGCTTTAGTGATTAGGGGCAGCAGAATGCAGAGTATGAGTACAAGGCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCACGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTCTTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGAAATTGGTCAAT-AGTTATAGAATGAGTCCTAGCATTGCAGTGTTACTGCTTTGCAAAGTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27937960 566 - 80997621 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTGTTGAAGATC-------TACCA----AGTAGTGCTCTGACCCGCTCCTTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGTAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCACGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGACTCAGGGTAGCTTTAGTGATTAGGGGCAGCAGAATGCAGAGTATGAGTACAAGGCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCATGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTCTTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGAAATTGGTCAAT-AGTTATAGAATGAGTCCTAGCATTGCAGTGTTACTGCTTTGCAAAGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1994230 566 + 10377808 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTGTTGAAGATC-------TACCA----AGTAGTGCTCTGACCCGCTCCTTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGTAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCACGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGACTCAGGGTAGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTATGAGTACAAGGCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCACGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTCTTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGAAATTGGTCAAT-AGTTATAGAATGAGTTCTAGCATTGCAGTGTTACTGCTTTGCAAAGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1881677 566 - 8458610 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATGAAAAATCATTCCTGTGAGTGTTGAAGATC-------TACCA----GGTAGTGCTCTGACCCGCTCCTTGTGCAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGACTCAGGGTAGCTTTAGTGATTAGGGGCAGCAGAATGCAGAGTATGAGTACGAGGCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCACGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTCTTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGAAATTGGTCAAC-AGTTATAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGCAAAGTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64837389 566 + 75148670 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAACCATTCCTGTGAGTGTTGAAGATC-------TACCA----AGTAGTGCTCTGACCCGCTCCTTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGACTCAGGGTAGCTTTAGTGATTAGGGGCAGCAGAATGCAAAGTATGAGTACAAGGCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCACGGCAAGAGAAAAA-TTGGAAAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACTTTCTTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGAAATTGGTCAAT-AGTTATAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGCAAAGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2060847 566 + 4244037 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTGTTGAAGATC-------TACCA----GGTAGTGCTCTGACCCGCTCTTTGTGCAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGACTCAGGGTAGCTTTAGTGATTAGGGGCAGCAGAATGCAGAGTATGAGTACGAGGCTGAGG------------GGTTCCTTTAAAA--------ACA--------TCACAGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTTCCCA-GACAGGAAACATCTTTCACTTTAAACTAGCACATTCTTTGAGTTGCCCAGAGCAGCTCCATGTGCTTGAAATTGGTCAAC-AGTTATAGAATGAGTCCTAGCATTGCAGTGTTATTGCTTTGCAAAGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2088727 566 + 4569836 -GGGCCTATTCATTACAGAAAGTGGAAAGATAAGGCACATGAGGT-TATCAAAAATCATTCCTGTGAGTGTTGAAGATC-------TACCA----GGTAGTGCTCTGACCCGCTCCTTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGTCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAATCATGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGTCTCAGCCTCTGGCTTAGGGTAGCTTTAGTGATTTGGGGCAGCAGAATGCAGAGTATGAGTACAAGGCTGAGG------------GTTTCCTTTAAAA--------ACA--------TCACGGCAAGAGAAAAA-TTGGAGAGAGATAAGACCTGTTCATGTGCCCA-GGCAGGAAACATCTTTCACTTTAAACTAGCACATTCTTTGAGTTGCCCAGGGCAGCTCCATGTGCTTGAAATTGTTCAAC-AGTTATAGAATGAATCCTAGCATTGTAGTATTATTGCTTTGCAAAGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46057624 566 - 159171411 -GGGCCTTTTCATTGCAGAAAGTGGAAAGATAAGGCAAATGAGGC-TATCAAAAATCATTCCTATGAGTCTTGAAGATCATAGGATCGTCAAGATCTTAGTGCTCTGACCCTGTCCTTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAACCACGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTGACTCAGCCTCTAGCTGAGGGTAGCTTTAGTGATTTGGGACAGCAGAATGCAGAGTATGAGTACAAGGCTGAGG------------GTGTCCTTTAATA--------ACA--------TCATGGCAAAAGAAAAA-TTGGAGAGAGATAAGACCTATTCATGTTCCCA-GACAGGAAACAGCTTTCACTTGAAACAAGCACATTATCTGAGTTGCCCAGAGCAGCTCCACACGCTTGAAATTGGTCAAC-AGTTATAGATTGAGTCCTAGCAT-----------CACTGTGCAAAGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1780012 551 + 3513951 -GGGCCTATTCATTGCAGAAAGTGGAAAGATAAGGCAAACGAGGT-TATCAGAAATCATTCCTATGAGTCTTGAGGATC-------TACCA----CTTAGTGCTCTGATCCTGACCTTGTGCAGGTACCAGACTGAACTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGCCTGCGAAGGATCCTGGATGAGCTGACCCTGTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGCAACCACGAGCAGGTGAGACTAGAAATG-AGAAATGCACAAACCTAACTCAGCATCTAGCTGAGGGTAGCTTGAGTGAATTGGGACAGCAGAATGCAGAGTATGAGTACAAGGCTGAGG------------GTTTCCTTTAATA--------ACA--------TCATGGCAAAAGAAAAA-TTGGAGAGAGATAAGACCTATTCACGTCCCCA-GACAGGAAACATCTTTCACTTGAAACAAGCACATTATCTGAGTTGCCCAGAGCAGCCCCACACGCTGGAAATTGGTCAAC-AGTTATAGATTGAGTCCTAGCAT-----------TGCTGTGCAG---- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6940745 554 - 7032639 -GGGCCTATTCATTGCAGAAAGTGGAAAGATCAGGCAAATGAGGT-CATCAAAAATCATTCCTATGAGTCTCAAAGATC-------TACCA----CTTAGTGCTCTGACCCTGTCCTTGTGCAGGTACCAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGACGAGCTGACCCTCTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGAGTAACCACGAGCAGGTGAGACTAAAAATG-AGAAATGCACAAACCTGACTCAGCCTGTAGCTGAGGGTAGCTTTAGTGATTTGGGACAGCGGAATGCAGAGTGTGAGTACCAGGCTGAGG------------GTTTCCTTTAATA--------ACA--------TCATAGCAAAAGAAAAA-TTGGAGAGAGATAAGACCTATTCATGTTCCCA-GACAGGAAACATCTTTCACTTGAAACAAGCACATTATCTGAGTTGCCCAGAGCAGCTCCACACGCTTGAAATTGGTCAAC-AGTTATAGATTGAGTCCTAGCAT-----------TGCTGTGCAGTCt- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35864850 582 - 65901067 -GGGTCTACTCGTTGCAGAAAGTGGGAAAAGAAGGTCAATGAGGT-TATCAGAT---GTTCCTATGAGTCTTGAAGATC-------TGCCA----GGCACTGCTCTGACCCTGTCCTTGTGCAGGTACGAGACAGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGACGAGCTGACCCTGTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCACGAGCAGGTGAGTCTGGAAATG-AGAAATGAAGAAACCTGATGCAGCCTGGGGCTGAGGGCAGCTTTAGGGACTTGGAAGAGCAGAATCCAGAGTGT-GATAC-AGGCTGAGGATGTCTTTATAAATTTCCTTTAAAAACACTAATACA--------TCACGATGAAAGAAAAA-CTGGAGAGACATAAAACTCATCCATGTTCCCA-GACAGGATGTATATTTTACTCAAAACTGGTGCATCATTTGAGTTTCCCAGACCACCTCCATCTGCTTGTCATTGGTCACCGAGTGGTAGAATGAGTCCCGGCGTTGCTGAGTTATGGCTGTGCAACATC i micMur3.chr16 C 0 I 15 s otoGar3.GL873537 22747257 574 + 28711273 -GAATCTACTCATTGCAGAAAGTGGGGAAAATAAGCACATGAGGT-TATCGAAA---ATTCCTGTGTGTCTTGAAGGTC-------TGTCA----GTTACT-CTCTGACCCTGTCCTTGTGCAGGTACGAGACGGAACTGTCCCTGCGGCAGCTGGTGGAGTCAGACATCAATGGTCTGCGCAGAATCCTGGATGAGCTGACCCTGTGCAAGTCTGACCTGGAGGCCCAGGTGGAGTCTCTGAAGGAGGAGCTGCTCTGCCTCAAGAGCAACCATGAGCAGGTGAGACAAGAAATG-AGAAATGAAAAGAACTGATGAAGCCTCTAGCTGAGGGTGGATTTAGGGATTTGCAACAGCAGAATCCAGAGTATGGATAT-AGACTGAGGATGTCTTTATACATTTTCCTTAAAAACATCAAAACA--------TCATGATGAAAGAAACA-TT-GAAAGAGAGAAAACTTATCTACGTTCCCAGGATAGGATACAT-CTTTACCCCAAACTGGTGCATTCTTTGAGTTCCCCAGAGCACCTCCATCTTCTTGTCAG-------CAAGTAGCAGAATGAGTCCCAGCATTGCTGTGACATGACAATGCAAAGCT i otoGar3.GL873537 I 80689 I 34 s mm10.chr11 22032860 517 - 122082543 --------------------------AAAGCAAGAAAGATGGTGTCTAACAAGGATTATTATTCTGCTTCTTAAAGTCC-------CACAA----GTTGCTCCTTTGACCCCGTCCTTCTTCAGGTATGAGACAGAGCTCGGTCTGCGGCAGCTGGTAGAGTCAGACATCAACGGCCTGCGAAGGATCTTGGATGAGCTGACCCTGTGCAAGTCTGACCTGGAGGCGCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGTCTCAAGAGGAACCATGAAGAGGTGAGAT--GAACTGAAGAAATTAA-----------CAGCCTCGG----------GCTTTAG-GATGGGAAGAAACAGGACTAAGGGTATAAAGATGACTCAAAGGGTGTCTTTATGAATCCCTTTCAGAG--------GCA--------CCAAGACCCGATGAGAG-ATAAGTAGAGCTGAAA-TTGTCCGTGTTTTCC-AATAGGA--TATGCCTCATGTTAAA-AAGCCCATGCACT--GTTTCCCAGA-CAGCTCTATTTGTTGGCAATTCGTCCTCAAGTTGTA----GGGTTCTAGACTTGCTGTAATAGTG--ATACAATT-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21365954 577 + 61074082 -GGGTCTACTCATTGCAGAAAGTGGAAAGACTAAGTGCATGGGGc-tatcaaagatcaatcctgtgagtcttgaaggtc-------tgctg----gtcACTGCTTTGACCTTGTCCTTGTGCAGGTATGAGACAGAGCTGGGCTTGCGGCAGCTTGTGGAGTCAGACATCAACGGCCTGCGCCGGATCCTGGATGAGCTGACCTTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTTCTCTGCCTCAAGAGGAACCATGAGGAGGTGAGACCAGAAATG-ATGAATGATAAAACCTGGCTCAGCCTCAGGCTGAGGGTGACTTGAATGATTTGGGATGTCAGAAACTGGAATATGAGGTTGGGGTTGACT------TTACAACTTTCCTTTAAAA--------ACACCAAAACTTCATGATGAATGAAAAA-----ACAGAGATGAAATTTATCCATGTTTCCA-GTTAACATGTATCTTTCACTCAAAACTGGTATATTGTGTGAGTTTCCTAGAGCCCCTCTATCAGCTTGTGATTGGTTACTGAGCTCTAGAATGAGCCTCAGCATTGTTGTATTCACGCTATGCAAAGTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 346365 583 - 852752 GGGTCCTACTCATTGGAGATAGTGGGAAGACAAGGTGAATGGGGT-TatcaaagatcattcctgtgggtcttgaagCTC-------TGCCA----GTTACTGCCCTGACCCTGTCCTTGTGCAGGTATGAGACGGAGCTGTCTCTACGGCAGCTGGTGGAGGCCGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACTCTGTGCAAGGCTGACTTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTTAAGAAGAACCATGAGGAGGTGAGCCCAGAAATT-AGAAATCAAGAGATCTGGTTCAGCCTCAGACTAAGGATGGCTCCGGTGATTTGGAGTAGCAGAATCAAGACT------ACCAGGCTGAGGATAGATTTACAAATTTCCTTGAAAAACACCAAAACA--------TCATAATGAAAGAAAAAATTAGAGGGTGATGAAACCTATCCATGGTCCCA-GATAGGATGTATCTTTCACTCACAACTGGTGCATCACTGGAGTTTCCCATTGTGTCACCATCTGCTTGTGATCAGTCACTGAACTGTAGAATGAGGCCCAGCAATGCTTTATTAGAGCTGTGCAAAGTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=272403.000000 s hg38.chr17_GL383564v2_alt 36839 48 + 133151 TTTTTTTTTT----TTTTTTGGCAAAGGCCAAG-AAAAAAAATATCAA------ACCTT s panTro5.chr17 16230739 41 + 83181570 --------TT----TTTTTTGGCAAAGGCCAAGAAAAAAAAATATCAA------ACCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138221 40 + 83442489 --------TT----TTTTTTGGCAAAGGCCAAG-AAAAAAAATATCAA------ACCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973218 47 + 4267968 -TTTTTTTTT----TTTTTTGGCAAAGGCCAAG-AAAAAAAATATCAA------ACCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1953370 46 - 2193130 TTTTTTTTTT----TTTTTTGGCAAAGGCCAAG---AAAAAATATCAA------ACCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30025930 39 - 77216781 -------TTT----TTTTTTGCCAAAGACCAAG---AAAAAAAATCAA------ACCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27938526 39 - 80997621 -------TTT----TTTTTTGCCAAAGACCAAG---AAAAAAAATCAA------ACCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1994796 39 + 10377808 -------TTT----TTTTTTGCCAAAGACCAAG---AAAAAAAATCAA------ACCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882243 41 - 8458610 ----TTTTTT----TTTTTTGCCAAAGACCAAG----AAAAAAATCAA------ACCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64837955 40 + 75148670 -----TTTTT----TTTTTTGCCAAAGACCAAG----AAAAAAATCAA------ACCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2061413 42 + 4244037 ---TTTTTTT----TTTTTTGCCAAAGACCAAG----AAGAAAATCAA------ACCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089293 45 + 4569836 -TTTTTTTTT----TTTTTTTCCAAAGACCAAG---AAAAAAAATCAA------ACCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058190 46 - 159171411 TTTTTTTTTT----TTTTTTGCCAAAGGCCAAG---AAAAAAAATCAA------ACCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1780563 46 + 3513951 TCTTTTTTTT----TTTTTTGGCAAAGGCCGAG---AAAAAAAATCAA------ACCTT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6941299 46 - 7032639 tttttttttt----ttttttGCCAAAGGCCAAG---AAAAAAAATCAA------ACCTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22747865 50 + 28711273 TTTtttttttgcagttttttggctggaactggg---------tttcaattcgccacctc i otoGar3.GL873537 I 34 C 0 s mm10.chr11 22033377 32 - 122082543 -------------GTTCTCCTGCTAAGATCAAT---AAGTCAGGGCAG----------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21366531 34 + 61074082 -------ATC----TCTCTCCCCAAAGGCCACT--------GAATCAA------GCCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 346948 35 - 852752 ------ACTT----CTCTCCTCCAAAGTCCACA--------GCACCAG------CCCTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e micMur3.chr16 35865432 15 - 65901067 I e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=1053502.000000 s hg38.chr17_GL383564v2_alt 36887 95 + 133151 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGAGTGTTTGTGAGATTCTTCCTCTCTCT--TGGGAGGGGCCATGACATGCTCTTACCTC s panTro5.chr17 16230780 95 + 83181570 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGAGTGTTTGTGAGATTCTTCCTCTCTCT--TGGGAGGGGCCATGACATGCTCTTACCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138261 95 + 83442489 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGAGTGTTTGTGAGATTCTTCCTCTCTCT--TGGGAGGGGCCATGACATGCTCTTACCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973265 94 + 4267968 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATT-GTGAAGAGTGTTTGTGAGATTCTTCCTCTCTCT--TGGGAGGGGCCATGACATCCTCTTACCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1953416 95 - 2193130 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTAGTGAAGAGTGTTTGTGAGCTGCTTCTTCTCTCT--CGGGAGGGGCCATGACATGCTCTTACCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30025969 97 - 77216781 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAATAGTGTTTGTGAGCTTCTTCCTCTCTCTCCTGGGAGGGGCCATGATATGCTCTTATCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27938565 97 - 80997621 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGCGAATAGTGTTTGTGAGCTTCTTCCTCTCTCTCCTGGGAGGGGCCATGATATGCTCTTATCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1994835 97 + 10377808 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAATAGTGTTTGTGAGCTTCTTCCTCTCTCTCCTGGGAGGGGCCATGATATGCTCTTATCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882284 97 - 8458610 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGAGTGTTTGTGAGCTTCTTCCTGTCTCTCCTGGGAGGGGCCATGATACGCTCTTATCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64837995 97 + 75148670 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGAGTGTTTGTGAGCTTCTTCCTCTCTCTCCTGGGAAGGGCCATGATGCACTCTTATCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2061455 97 + 4244037 ATAAATGTGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGAGTGTTTGTGAGCTTCTTCCTGTCTCTCCTGGGAGGGGCCATGATACGCTCTTATCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089338 93 + 4569836 ATAAACATGAGTCT----------------------------CTACTCTTTCA-----------------------------AAGTATTGGTGAAGA----CTGTGAGCTTCTTCCTGTCTCTCCTGGGAGGGGCTATGATACGCTTTTCTCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058236 97 - 159171411 ATAAATGCGAGTCT----------------------------CTACTCTTTTA-----------------------------AAGTATTGGTGAAGAATGTTTGTGAGCTTCTTCCTCTCTCTCCTGGGAGGGGCCATGACATGCTCTTACCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1780609 97 + 3513951 ATAAATGCGAGTCT----------------------------CTACTCTTTTA-----------------------------AAGTATTAGTGAAGAATGTTTGTGAGCTTCTTCTTCTCTCTCCTGGGAGAGGCCATGACATGCTCTTACCTC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6941345 97 - 7032639 ATAAATGCGAGTCT----------------------------CTACTCTTTTA-----------------------------AAGTATTGGTGAAGAATGTTTGTGAGCTTCTTCCTCTCTCTCCTGGGAGGGGCCATGACATGCTCTTACCTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35865447 92 - 65901067 ATGAATGTGAGTCT----------------------------CTGCCCATTCC-----------------------------GAGTCTTGGTGAAGAGTATTTG-GGGATCCTTC---TCTCTCC-AGGAGGAACCATTCCATGCTCCTACCTC i micMur3.chr16 I 15 C 0 s otoGar3.GL873537 22747915 150 + 28711273 tggcatatggggctggtgccttactcctttaagccacaggcactgccctttcttttcttttctttttttttGCACTCTTTCAAAGTCTTGCTGAAGAATGTTTG-GAGCTCATTC---TCTGTCCTAGGAGGGGCCACAGCATGCTCTTACCTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22033409 83 - 122082543 GCAAATGTT-GTCT----------------------------CCACTCTTCCA-----------------------------AAGTTTTGGTGAGGAATGAGTG---GCTTCTCC----------TGGGAGGTGCCATCATATGATATTCCCTC i mm10.chr11 C 0 I 114 s canFam3.chr9 21366565 93 + 61074082 GTGAATCTGAGTTT----------------------------CTACTCTTTCA-----------------------------AAGTTTTGGTGAAAAACGATCTGAGGCTCCTCCTTCTCTGTCCT-GGAGGAGCCATGCCATGATCTCCT--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 346983 88 - 852752 AGGAATCTGAATTT----------------------------TTACCCTTTCC-----------------------------AGGTCTTGGTGAAAAATTATCTGAGGCTCCTCCTCCT---------GAGGAGCCAAGATATGATCTTATTTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=856640.000000 s hg38.chr17_GL383564v2_alt 36982 85 + 133151 TTACT-----------------------------------------------------------------------------------TGAC-AGCAAGAATTTTTTGATATATGGTCTGAAATTGCACAGCC-----------TA-T-TTTTTTTGGCATTCTGAGGTCCTC-ACAGCCAAT s panTro5.chr17 16230875 86 + 83181570 TTACT-----------------------------------------------------------------------------------TGAC-AGCAAGAGTTTTTTGATATATGGTCTGAAATTGCACAGCC-----------TATT-TTTTTTTGGCATTCTGAGGTCCTC-ACAGCCAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138356 86 + 83442489 TTACT-----------------------------------------------------------------------------------TGAC-AGCAAGAGTTTTTTGATATATGGTCTGAAATTGCACAGCC-----------TATT-TGTTTTTGGCATTCTGAGGTCCTC-ACAGCCAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973359 86 + 4267968 TTACT-----------------------------------------------------------------------------------TGAC-AGCAAGAGTTTTTTGATATATGGTCTGAAATTGCACAGCC-----------TATT-TTTTTTGGGCATTCTGAGGTCCTC-ACAGCCATT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1953511 86 - 2193130 TTACT-----------------------------------------------------------------------------------TGAC-AGCAAGAGTTTTTTGATTTATGGTCTGAAATTGCACAGCC-----------TATT-TTTTTTTTGCATTCTGAGGTCCTC-ACAGCCAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026066 91 - 77216781 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATACGGTCTGAAATTGCACAGCC------AATTTTATT-TTTTTTTTGTATGCTGAGGTCCTC-ACAGCCAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27938662 91 - 80997621 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATACGGTCTGAAATTGCACAGCC------AATTTTATT-TTTTTTTTGTATGCTGAGGTCCTC-ACAGCCAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1994932 91 + 10377808 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATACGGTCTGAAATTGCACAGCC------AATTTTATT-TATTTTTTGTATGCTGAGGTCCTC-ACAGCCAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882381 90 - 8458610 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATACGGTCTGAAATTGCACAGCC------AATTTTATT-T-TTTTTTGCATGCTGAGGTCCTC-ACAGCCAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838092 91 + 75148670 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATATGGTCTGAAATTGCACAGCC------AATTTTATT-TTTTTTTTGCATGCTGAGGTCCTC-GCAGCCAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2061552 90 + 4244037 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATACGGTCTGAAATTGCACAGCC------AATTTTA-T-TTTTTTTTGCATGCTGAGGTCCTC-ACAGCCAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089431 92 + 4569836 TTACT-----------------------------------------------------------------------------------TGAC-AACAAGAGTTTTTTGATATATGGTCTGAAATTGCACAGCC------AATTTTATTATTTTTTTTGCATGCTGAGGTCCTC-ACAGCCAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058333 86 - 159171411 TTAGT-----------------------------------------------------------------------------------TGAT-TGTAAGAGGTTTTTGATATACAATCTGAAATTGTACAGCC----------TTTAT-TTTTTTTTGCA-TCTGAGGCCTTC-TCAACCAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1780706 97 + 3513951 TTAGT-----------------------------------------------------------------------------------TGAT-TGCAAGAGGTTTTTGATATACAATCTGAAATTGCACAGCCttttttttttttttt-ttttttttGCATTCTAAGTTCCTC-TCAACCAAT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6941442 83 - 7032639 TTAGT-----------------------------------------------------------------------------------TGAT-TGCAAGATGTTTTTGATATACAATCTGAAATCGTACAGCC--------------T-TTTTTTTTGCATTCTGAGGTCCTC-TCAACCAAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35865539 82 - 65901067 TTACT-----------------------------------------------------------------------------------TGAT-AGTAAGAGTTGTTTGATATACAATCTGAAATTGTATAGGC----------------AATATTGTGCATTCTGAGGTCTTC-ATAGCCAAT i micMur3.chr16 C 0 I 25 s otoGar3.GL873537 22748065 82 + 28711273 TTACT-----------------------------------------------------------------------------------TGAT-GGCAAGAAGTGTTTGATATACAATCTGAAATTGTACAGCT----------------AATATTTTGCATTATGAGTTTCTC-ATAGCCAAT i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22033606 164 - 122082543 ttacttccttccttcctttcttcctttctttcttttctcttctccttgtttctttctttctttgcttccttGTTTGTTTGTTTGTTTCTGGC-AGTATTA-TTGTTAGATGTACATTCTGAACTAGTCCAGCC----------------ATTATTTTGCATTTTGAGGGTCTC-ACAGACAAT i mm10.chr11 I 114 I 2 s canFam3.chr9 21366658 79 + 61074082 ----T-----------------------------------------------------------------------------------TGAT-GGCAAAAATTGTTTGCTTTACAATCTGAAATCGTACAGTC----------------AATTCTTTGTATTATGAGCTCTTCTGCAGCCAAT i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 347071 84 - 852752 TTACT-----------------------------------------------------------------------------------TAATGAAAAAGAATTGTTTAACATGCCGTCTGAAATTGTACAGTC----------------CATTCTTTGTATCCAGAGGTCTTCTGCAACCATT i dasNov3.JH570468 C 0 I 6 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=258149.000000 s hg38.chr17_GL383564v2_alt 37067 27 + 133151 TGTAAACTGGGAAAGTTGAATATCAAT s panTro5.chr17 16230961 27 + 83181570 TGTAAACTGGGAAAGTTGAATATCAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138442 27 + 83442489 TGTAAACTGGGAAAGTTGAATATCAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973445 27 + 4267968 TGTAAACTGGGAAAGTTGAATATCAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1953597 27 - 2193130 TGTAAACTGAGAAAGTTGAACATCAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026157 27 - 77216781 TGTAAACTGGGAAAGTTGAACCTCAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27938753 27 - 80997621 TGTAAACTGGGAAAGTTGAACCTCAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995023 27 + 10377808 TGTAAACTGGGAAAGTTGAACCTCAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882471 27 - 8458610 TGTAAACTGGGAAAGTTGAACATCAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838183 27 + 75148670 TGTAAACTGGGAAAGTTGAACATCAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2061642 27 + 4244037 TGTAAACTGGGAAAGTTGAACATCAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089523 27 + 4569836 TGTAAACTGGGAAAGTTGAACATCAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058419 27 - 159171411 TATAAACTGGTAAAGCTGCACATCACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1780803 27 + 3513951 TATAAGCTGGTAAAGCTGCACATCACA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6941525 27 - 7032639 TATAAACTGGTAAAGCTGCACATCACT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22748148 27 + 28711273 TCTTTACTGGGAAAATTGTATGTCAAC i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22033772 23 - 122082543 TCCAATCTGGGACATGTGTTTGT---- i mm10.chr11 I 2 C 0 s canFam3.chr9 21366738 23 + 61074082 TGCAAATTGGGAAAGTTGGGCAT---- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 347161 23 - 852752 TGCAAACTGGGAAAATTGGGTAT---- i dasNov3.JH570468 I 6 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e micMur3.chr16 35865621 25 - 65901067 I e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=5085200.000000 s hg38.chr17_GL383564v2_alt 37094 365 + 133151 TAGTTCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAAACTGCTCCA--CTCAAAGTTTCTTTTCCG-AGAAAATAGACTAACAGGGTTTCAACAAGCAATGCCATTCCTTAG--AGTTCATTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAATACCCTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCTCCCACTGTGGACCTGAATCGGGTGCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA s panTro5.chr17 16230988 365 + 83181570 TAGTTCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAAACTGCTCCA--CTCAAAGTTTCTTTTCCG-AGAAAATAGACTAACAGGGTTTCAACAAGCAATGCCATTCCTTAG--AGTCCACTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAATACCCTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAAGTGGATGCTGCTCCCACTGTGGACCTGAACCGGGTGCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138469 365 + 83442489 TAGTTCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAAACTGCTCCA--CTCAAAGTTTCTTTTCCG-AGAAAATAGACTAACAGGGTTTCAACAAGCAATGCCATTCCTTAG--AGTCCACTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAATACCCTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAAGTGGATGCTGCTCCCACTGTGGACCTGAACCGGGTGCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973472 364 + 4267968 TAGTTCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GA-TTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TACCTTGA---GCTGTCACAAACTGCTCCA--CTCAAAGTTTCTTTTCCG-AGAAAATAGACTAACAGGGTTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAATACCCTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCTCCCACTGTGGACCTGAACCGGGTGCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1953624 365 - 2193130 GAGTTCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCTATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAAACTGCTCCA--CTCTAAGTTTCTTTTCTG-AGAAAATAGACTAACAGGGTTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-CTTTCCGCATCCACAGGAGGTCAACACCCTGCGCTGCCAACTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCTCCCACTGTGGACCTGAACCGGGTGCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026184 365 - 77216781 TAGTCCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACCAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTAGATGCTGCCCCCACTGTGGACCTGAACCGGGTGCTAAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27938780 365 - 80997621 TAGTCCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACCAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTAGATGCTGCCCCCACTGTGGACCTGAACCGGGTGCTAAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995050 365 + 10377808 TAGTCCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-TTTTCTGCATCCATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTAGATGCTGCCCCCACTGTGGACCTGAACCGGGTGCTAAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882498 365 - 8458610 TAGTCCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATAGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-CTTTCTGCATCCATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTAGATGCTGCCCCCACTGTGGACCTGAACCGGGTGCTAAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838210 365 + 75148670 TAGTCCATCCTTCAGTGGCATCCAAGCAAACTTCTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCAATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-CTTTCTGCATCCATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTAGATGCTGCCCCCACTGTCGACCTGAACCGGGTGCTAAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2061669 365 + 4244037 TAGTTCATCCTTCAGTGGCATCCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCATTCTTTGCTGAGCATAGTAACTCTTGTA-CTTTCTGCATCCATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTAGATGCTGCCCCCACTGTGGACCTGAACCGGGTGCTAAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089550 365 + 4569836 TAGTCCATCCTTCAGTGGCAACCAAGCAAACTTTTGG-GATTTTTTTCTGAAGCCAAG-TGCCATGGCACAGCAGATGGTGGGGAGGGGGCTATG-------CCACATGGAG--------------TGCCTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTGTTCTG-AGAGAACAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTCCGTTCTTTGCTGAGCATAGTAACTCTTGTA-CTTTCTGCATCCACAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGTCTCAACGTGGAGGTGGACGCTGCCCCCACTGTGGACCTGAACCGGGTGCTGAACGAGACCAGGAGTCAGTACGAGGCCCTGGTGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058446 363 - 159171411 TAGTTCATCCTTCAGTGGCAGCCAAGCAAAGCTTTGG-ATTTTTTTTCTGAAGCCAAG-TGCCGTGGCATAGCAGATGGAGAAGAGGGGGCTATG-------CTGCATGGAG--------------TGCCTTGA---GCTGTGACAGGCTGCTCCC----CTGAGTTTCTATTCTG-AGAAAATAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGTACATTCTTTGCTCAGGATAGTAACTCTTGTA-TTTTCTGCATCTATAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGACGCTGCCCCCACTGTGGACCTGAACCAGGTCCTGAATCAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1780830 368 + 3513951 CAGTTCATTCTTCAGTGGCATCCAAGCAAATCTTTGGAATTTTTTTTCTGAAGCCAAG-TGCCATGGAATACCAGATGGTGAAGAGGGGGCTACG-------CCACGTGGAG--------------TGCCTTGA---GCTGTAACAGACTGCACCCCGCTCGGAGTTTCTTTTCTG-AGAAAATAGACTAACAGGGTTTCAACAAGCAATGCCATTCCTTAG--AGTACATTCTTTGCTCAGTATAGTAACTCTTGTA-TTTTCTGCATCTATAGGAGGTCAACACCCTGCGCTGCCAGCTGGGAGATCGCCTCAACGTGGAGGTAGACGCTGCCCCCACTGTGGACCTCAACCAGGTCCTGAACCAGACCAGAAGTCAGTATGAGGCCCTGGTGGA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6941552 366 - 7032639 TAGTTCATCCTTCAGTGGCATCCAAGCAAATCTTTGGAATTTTTTTTCTGAAGCCAAG-TGCCATGGCATAGCAGATGGTGAAGAGGGGGCTATG-------CTACATGGAG--------------TGCCTTGA---GCTGTCACAGGCTGCTCCC--CTTGGAGTTTCTTTTCTG-AGAAAATAGACTAACAGGGCTTCAACAAGCAATGCCATTCCTTAG--AGCACATTCTTTGCTCAGGATAATAACTCTTGTA-TTTTCTGCATCTATAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACCAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35865646 375 - 65901067 TGGTTCATCCTTCAGTGGCATCCAGGCATAACCTTGG-GAATTCTTTTTGAAGCCAAG-TGCCCTGGCACAGCA-ATGGTGAGAAGGGGTCCGTG-------CCATGTGGATTGCAGGCCAT--TTTGCCTTGA---GCTGTTACAGACTTCTCCA--CTCAAAGTT--TCTTTTGCAGGAGATAGACTAACAGCGCTTCTACACACAATGTCATTTCTTAG--AGTCCATTCTTTGTTGAAGAGAGTTACTCTTGTA-TTTTCTGCATTCACAGGAAGTCAACACCCTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCACCGTGGACCTGAACCAGGTGCTGAACGAGACCAGGAGCCAGTACGAGGCCCTGGTGGA i micMur3.chr16 I 25 C 0 s otoGar3.GL873537 22748175 376 + 28711273 TAGATCATCCTTCACTGGCATCCAGGCGAAACCTTGG-GAATTCTTTTCAAAACTAAG-TGCCATGGTGCAGCC-ATGGTGAGGATGGGGCCATG-------TGACATGGAGTACAGGCCAT--TTTGCTTTGA---GCTGTTGCAGATTATTCCA--CTCAGAGGTACTCTTCTG-AGAAAATGGATCGACAGGGCATGGACAAGCAGTGTCCTTTCTTTG--AGTCCATTCTTTGTTGAAGAGAGTTCCACTTGTG-TTTTTTGCATTCACAGGAAGTCAACACCCTGCGTTGCCAGATTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCCCCCACTGTGGACCTGAACCGGGTTCTAAATGAGACCAGGTGTCAATATGAGGCCCTGGTGGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22033795 369 - 122082543 TAAGCCTTCTTTCAGCAGTAACTAAGCAAACCCTTGG-AACTTCTTTTTGAAAACAAG-TGTCATGGCATAGTA-ATGAGGAGGAGGGAGCTGGGAGCTGACCCCCATGGAG--------ATTATTTGCCTGAAATGGATATAATTGATTGCTCCA--CTTGGACTTTCTTTTCTG-AGAAAATA-CTTAGGAGGGCTTTGATAGGCAGTGCCATCGCTGAG--A--------CTCATTGAAGGTAATAACTCT--AA-ATGTATGCATCTGTAGGAAGTCAACACCCTACGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGTGTGCTCAACGAGACCAGGTGTCAGTACGAGGCCATGGTGGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21366761 361 + 61074082 TGGTCCATCTTTTGGTGGCATC-AAGCAAACCCTTGG-GAATTCTTCTTGAATCCAAG-TGCCATGGCATGGTTG--TGTGAGGAGGGAGCTGTG-------CCACATGGAGCACAGAGCATTT--TGCTTTGA---GCTGTCACAGACTGCTCCA--CTCAAAGTTTCTTTTTCA-AGGAAATAGACTAACAGGGCTTCAGCAAGCAA---------------AGTCCATTCTTCGTTAAGGAGAATTACTCTTGCC-TTTTCTGCATCCACAGGAAGTCAACACCCTGCGCTGCCAGATTGGAGACCGCCTCAATGTGGAAGTGGACGCAGCCCCTGCCGTGGACCTGAACCGTGTGCTCAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347184 374 - 852752 TAGTTCATTCTTCAGTGGCATCCAAGCAAGTTCCTGG-GAATTCTTTTGGAATCCAAGCTGC--TGGCACAGTATA----AGTGAGGAGGCTGTG-------CCACATGGAGCTCAGGGCACT---TTGCTTGA---GCTATCATAGACTGTTCCA--CTAAAAGTTTCTTTTCTG-AGGAAATAAACTATCAGGGCTTCAAGAGGCAATGTCATTTCTCAGAAAGTTTGCTCTTCATTGAGGATAGTCCCTCTCACATTTTTTTGTACCCACAGGAAGCCAACTCCCTGCGTAGCCAGATCGGAGACCGCCTCAACGTGGAGGTGGATGCGGCGCCCACCGTGGACCTGAACCGTGTGCTGAACGAGACCAGGTGCCAGTACGAGGCCCTGGTGGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2948472 76468 + 8555354 T e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=200992.000000 s hg38.chr17_GL383564v2_alt 37459 12 + 133151 AACCAACCGCAG s panTro5.chr17 16231353 12 + 83181570 AACCAACCGCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138834 12 + 83442489 AACCAACCGCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973836 12 + 4267968 AACCAACCGCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1953989 12 - 2193130 AACTAACCGCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026549 12 - 77216781 AACCAACCGCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939145 12 - 80997621 AACCAACCGCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995415 12 + 10377808 AACCAACCGCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882863 12 - 8458610 AACCAACCGCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838575 12 + 75148670 AACCAACCGCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062034 12 + 4244037 AACCAACCGCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089915 12 + 4569836 AACCAACCGCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058809 12 - 159171411 CACCAACCGCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1781198 12 + 3513951 CACCAACCGCAG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6941918 12 - 7032639 CACCAACCGCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866021 12 - 65901067 GACCAACTGCAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2872004 12 + 8555354 GAACAACCGCAG i proCoq1.NW_012135969v1 T 76468 I 119 s otoGar3.GL873537 22748551 12 + 28711273 TACCAACCGCAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034164 12 - 122082543 AACCAACCGCCG i mm10.chr11 C 0 C 0 s canFam3.chr9 21367122 12 + 61074082 GACCAATCGCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347558 12 - 852752 GACCAACCGCAG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=555890.000000 s hg38.chr17_GL383564v2_alt 37471 34 + 133151 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC s panTro5.chr17 16231365 34 + 83181570 AGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138846 34 + 83442489 AGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973848 34 + 4267968 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954001 34 - 2193130 GGAAGTGGAGCAATGGTTCACCACACAGGTGGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026561 34 - 77216781 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939157 34 - 80997621 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995427 34 + 10377808 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882875 34 - 8458610 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838587 34 + 75148670 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062046 34 + 4244037 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089927 34 + 4569836 GGAAGTGGAGCAATGGTTCACCACGCAGGTGGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058821 34 - 159171411 GGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1781210 34 + 3513951 GGAAGTGGAGCAGTGGTTCGCCACGCAGGTGGGC i saiBol1.JH378271 C 0 T 81984 s aotNan1.NW_018502359v1 6941930 34 - 7032639 GGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866033 34 - 65901067 GGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGT i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22748563 34 + 28711273 GGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034176 34 - 122082543 GGAAGTGGAGGAATGGTTCACCACACAGGTGGGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21367134 34 + 61074082 GGACGTGGAGGAATGGTTCACCACCCAGGTGGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347570 34 - 852752 GGACGTGGAGGAGTGGTTCATCACGCAGGTGGGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2872016 119 + 8555354 I e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=67438.000000 s hg38.chr17_GL383564v2_alt 37505 6 + 133151 A--TCTAA s panTro5.chr17 16231399 6 + 83181570 A--TCTAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138880 6 + 83442489 A--TCTAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973882 6 + 4267968 A--TCTAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954035 6 - 2193130 A--TCTAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026595 6 - 77216781 A--TCTAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939191 6 - 80997621 A--TCTAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995461 6 + 10377808 A--TCTAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882909 6 - 8458610 A--TCTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838621 6 + 75148670 A--TCTAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062080 6 + 4244037 A--TCTAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089961 6 + 4569836 A--TCTAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058855 6 - 159171411 A--TCTAA i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6941964 6 - 7032639 A--TCTAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866067 8 - 65901067 GTCTCTCA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22748597 6 + 28711273 A--TCTAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034210 6 - 122082543 A--TCTGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21367168 6 + 61074082 A--TCTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347604 6 - 852752 G--CCTAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2872016 119 + 8555354 I e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T e saiBol1.JH378271 1781244 81984 + 3513951 T a score=717338.000000 s hg38.chr17_GL383564v2_alt 37511 70 + 133151 GCATGTGGCCCC----TCAGGACCCAAGGCC--CCCCAGGGCCCCGGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- s panTro5.chr17 16231405 70 + 83181570 GCACGTGGCCCC----TCAGGATCCAAGGCC--CCCCAGGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138886 70 + 83442489 GCACGTGGCCCC----TCAGGATCCAAGGCC--CCCCAGGGCCCCGGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973888 69 + 4267968 GCACGTGG-CCC----TCAGGACCCAAGGCT--CCCCAGGGCCCCGGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954041 72 - 2193130 GCACGAGGCCAT----TCAGGACCCAAGGCCTATCCTAGGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026601 72 - 77216781 GCACGTGGCCAC----TCAGGACCCAAGGCCAACCCTATGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939197 72 - 80997621 GCACGTGGCCAC----TCAGGACCCAAGGCCCACCCTATGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995467 72 + 10377808 GCACGTGGCCAC----TCAGGACCCAAGGCCCACCCTATGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882915 72 - 8458610 GCACGTGGCCAC----TCAGGACCCAAGGCCCACCCTATGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838627 72 + 75148670 GCACGTGGCCAC----TCAGGACCCAAGGCCCACCCTATGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062086 72 + 4244037 GCACGTGGCCAC----TCAGGACCCAAGGCCCACCCTATGGCCCCAGAAGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2089967 72 + 4569836 GCACGTGGCCAC----TCAGGACCCAAGGCTCACCCTACGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCTCCTTG---------------G- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058861 76 - 159171411 GCATGTGGCTGGCCATTCAGGGCCCAAGGCCCACCCTAGGGCTCTGGAGGCAGGGTC-----------TGATTTT------TTCTGCCCCTG---------------G- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1699260 85 + 3513951 -------GCTGG------GGTGCCCTGGGACCAC----AGGCTCCTGGGCTGGGGTTACCCTTTGCAATAACTTG------GTCTGACCATGCTCTGAGCCCTCGCAT- i saiBol1.JH378271 T 81984 C 0 s aotNan1.NW_018502359v1 6941970 72 - 7032639 GCACACGGCCGT----TCAGGGCCCAAGGCCCACCCTAGGGCCCCAGAGGCAGGGTC-----------TGATCCT------TTCTCCCCTTG---------------G- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866075 73 - 65901067 ACACGTGGCCAC----TCGGCCCCCCAGACC--CCCCAGGGCCCTCGAGGCAGGGTC-----------TGATCCTGCG---TCCTCCCCTTG---------------C- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22748603 72 + 28711273 GCATGTGGCCAC----TCAG-ACCCCAGAGC--CCCCAGGGTCCCTGAGGCAGTATC-----------TGATCCTGTC---TCTTCCCCCTG---------------G- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034216 75 - 122082543 GCCCATGGTAAC----TCAGGAACTGAGTCT--CCCCAGGACTGTA-AGGCAGGGTC-----------TGATCCTGTCCCTCCCTCCCTTTG---------------C- i mm10.chr11 C 0 C 0 s canFam3.chr9 21367174 73 + 61074082 GCACGTGGCCGC----TCAGGACCCTTGGCC--CCTCGGGGCCCTTGAGGCAAGGTC-----------TGACCCTGTC---TTCTCCCCTAT---------------G- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347610 73 - 852752 GCACGTGGCCAC----GCAGGA-CCGCGGTC--CCTCGGGGCCTTGGAGGCAGCGCC-----------TGATCCTGGC---TTCTCCCCTTT---------------GG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2872016 119 + 8555354 I e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=693287.000000 s hg38.chr17_GL383564v2_alt 37581 39 + 133151 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC s panTro5.chr17 16231475 39 + 83181570 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138956 39 + 83442489 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973957 39 + 4267968 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954113 39 - 2193130 GCGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026673 39 - 77216781 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939269 39 - 80997621 ATGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995539 39 + 10377808 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1882987 39 - 8458610 GTGTTTCAGACTGAGGAGCTGAACAAGCAGGTGGTATCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838699 39 + 75148670 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062158 39 + 4244037 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090039 39 + 4569836 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058937 39 - 159171411 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1699345 39 + 3513951 GTGTTTCAGACTGAGGAGCTGAACCAGCAGGTGGTGTCC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6942042 39 - 7032639 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866148 39 - 65901067 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGGTGTCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2872135 39 + 8555354 GTGTTTCAGACCGAGGAGCTGAACCAGCAAGTGGTATCT i proCoq1.NW_012135969v1 I 119 I 78384 s otoGar3.GL873537 22748675 39 + 28711273 ATTTTTTAGACTGAGGAGCTGAACAAGCAGGTGGTGTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034291 39 - 122082543 CTATTGCAGACAGAGGAGCTGAACAAGCAGGTGGTGTCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21367247 39 + 61074082 CTCTTTCAGACTGAGGAGCTAAACAAGCAGGTAGTGTCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347683 39 - 852752 ACATTTTAGACCGAGGAGCTCAACAAGCAGGTGGTGTCC i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=1856091.000000 s hg38.chr17_GL383564v2_alt 37620 103 + 133151 AGCTCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTA s panTro5.chr17 16231514 103 + 83181570 AGCTCAGAGCAGCTGCAGTCCTATCAGGCAGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAACACAACCTGGTGTGTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16138995 103 + 83442489 AGCTCAGAGCAGCTGCAGTCCTATCAGGCAGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAACACAACCTGGTGTGTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3973996 103 + 4267968 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954152 103 - 2193130 AGCTCGGAGCAGCTGCAGTCCTATCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATAGAGCTACAGGCCCAGCACAACCTGGTGTGTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026712 103 - 77216781 AGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGTGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939308 103 - 80997621 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGTGTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995578 103 + 10377808 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGTGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883026 103 - 8458610 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGTGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838738 103 + 75148670 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGTGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062197 103 + 4244037 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGTGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090078 103 + 4569836 AGCTCAGAGCAGCTGCAGTCCTATCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCATAACCTGGTGGGTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46058976 103 - 159171411 AGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1699384 103 + 3513951 AGCTCAGAGCAGCTGCAGTGCTGCCAGACTGAGATCATCGAGCTGAGACGCACGGTGAATGCCCTGGAGATTGAGCTGCAGGCCCAGCACAGCATGGTGAGTG i saiBol1.JH378271 C 0 I 82146 s aotNan1.NW_018502359v1 6942081 103 - 7032639 AGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATAGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866187 103 - 65901067 AGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGCGCCGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950558 103 + 8555354 AGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGCGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTG i proCoq1.NW_012135969v1 I 78384 C 0 s otoGar3.GL873537 22748714 103 + 28711273 AGCTCAGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGCACAGTCAATGCCCTGGAGATCGAGTTGCAGGCCCAGCACAACCTGGTGAGTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034330 103 - 122082543 AGCTCAGAGCAGCTGCAGTCCTGCCAAGCCGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACTGCATGGTGTGTA i mm10.chr11 C 0 C 0 s canFam3.chr9 21367286 103 + 61074082 AGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATTGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTCCAGGCCCAACACAACCTGGTGGGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347722 103 - 852752 AGCTCGGAGCAGGTGCAGTCCTGCCAGGCTGAGATCATCGAACTGAGGCGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTGTGTG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=1599818.000000 s hg38.chr17_GL383564v2_alt 37723 148 + 133151 TTGTTCAGACCTGC----TGGTGAGCGACGGGAACTTGGG-AGGC-AGAGTCCCGG--------GGATGTGCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGTAATC-CTGTGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT s panTro5.chr17 16231617 148 + 83181570 TTGTTCAGACCTGC----TGGTGAGCGATGGGAACTTGGG-AGGC-AGAGTCCCGG--------AGATGTGCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTCGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139098 148 + 83442489 TTGTTCAGACCTGC----TGGTGAGCGATGGGAACTTGGG-AGGC-AGAGTCCCGG--------GGATGTGCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTCGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974099 148 + 4267968 TTGTTCAGACCTGC----TGGTGAGCGATGGGAACTTGGG-AGGC-AGAGTCCCGG--------GGATGTGCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTCGGAATC-CTATGAAGAAATCCGTTGAAGGAGCAGCTCTCTGACAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954255 148 - 2193130 TTGTTCAGACCTGC----TGGTGAGCGATGGGAAGTTGGG-AGGC-AGAGTCCTGG--------GGATGTGCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGACGGAGCAGCTCTCTGACCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026815 147 - 77216781 TTGTTCTGACCTGC----TGGTGAGCAATGGGAAATTGGG-AGGC-AGAGTCCT-G--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939411 148 - 80997621 TTGTTCTGACCTGC----TGGTGAGCAATGGGAAATTGGG-AGGC-AGAGTCCTGG--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995681 148 + 10377808 TTGTTCTGACCTGC----TGGTGAGCAATGGGAAATTGGG-AGGC-AGAGTCCTGG--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883129 148 - 8458610 TTGTTCTGACCTGC----TGGTGAGCAATGGGAAATTGGG-AGGC-AGAGTCCTGG--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTTTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCACTCTGACAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838841 148 + 75148670 TTGTTCTGACCTGC----TAGTGAGCAATGGGAAATTGGG-AGGC-AGAGTCCTGG--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACGCTTTGAAGGAGCAGCTCTCTGACAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062300 148 + 4244037 TTGTTCTGACCTGC----TGGTGAGCAATGGGAAATTGGG-AGGC-AGAGTCCTGG--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090181 148 + 4569836 TTGTTCTGACTTGC----TGGTGAGCGATGGGAAATTGGG-AGGC-AGAGTCCTGG--------GGATGCCCTTGGGGCCACACACTCTC------------------------------------------------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATC-CTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059079 147 - 159171411 TTGTTCAGCCCTGC----TGGTGAGCGATGGGACGTTGGG-AGGC-AGAGTCCCGG--------GGCTGCCCTTGGGACCACACGCTCTC------------------------------------------------------CTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATC-CTATGAAGAAAGGCTTTGAAGGAGCAGCTCTCTGACAT i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6942184 147 - 7032639 TTGTTCAGCCCTGC----TGGTGAGCGATGGGATGTTGGG-AGGC-AGAGTCCCGG--------GGCTGCCCTTGGGACCACACGCTCTC------------------------------------------------------CTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATC-CTATGAAGAAAGGCTTTGAAGGAGCAGCTCTCTGACAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866290 147 - 65901067 CTGCTCTGGCCTGC----TGGGGAGCCAGGGGCAGCCGGGGAGGC-GGGGTCACGG--------GGATGCCCTTTGGGCCACAGGCTCTC------------------------------------------------------CCTAG-TGTTGGATCTTGTGAGTT-CTTGGGACC-CCATGGAGAAATCCTTTAAAGGAGCAGCTGTCTGACAC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950661 148 + 8555354 CTGCTCAGACCTGC----TGGAGAGCCAGGGGGAGGCGGGGAGGC-GGAGTCACGG--------GGATGCCCTTTGGGCCACACGCTCTC------------------------------------------------------CTTAG-TCTTGGATCTGGTGAAGT-CTTTGGACCTCCATGGAGAAACCCTTTAAAGGAGCAGCTCTCTGACAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22748817 155 + 28711273 TGGCTCAGACCTGA----TGGAGAGCAGGGGGTGGTTGGGAAGGT-GGGGTTATGGGGTCATGCGGGTGGTCTCTGGGTCACACAGTCTC------------------------------------------------------CTTAGCTCTGGGATCTTGGGACTC-TATGGAACC-CCGTGGAGAAAACTTTT-AAGGAGCAGCTATATGACAT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22034433 200 - 122082543 GTGTCCAGAC-TGC----TGCTGAGCAGTGTGGAGTGGGG-AGGC-AGAGTCACTG--------GGGTGTCCTTGGGTtctctctctctctctcgttctctctgtctctgtctctgtgtctgtctctctctgtctgtctctctTCTTAGCTTTTGAAGCCTGTGACTTCTCTGGAAGT-C-ATGCAGAAACCTTCAGAGGGAACAGCTCTGTGACAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21367389 78 + 61074082 TTGTTCT----------------------------------GGGT-ACTGTCCAGG-----------------------------CTCTC------------------------------------------------------CTGACCTCGTGAAGC--------------------CCATGGAGAAGCCCCCTG-GGGAGGGGCTCAGTGACAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347825 151 - 852752 TGGCTCAGACCTGCCCTGCGGTGGGAAGGGCCGGGTCGGG-GAACGGGAGTCCCGG--------GCATCCCCTGGGGACCAGGCACTCTC------------------------------------------------------CTTAAC-CTGGACGCTTGTGGCTTCTTTGGAACC-ACGTAGAGAAAGGCTTAG-AGGAGCCCCTCCCTGATGC i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T e saiBol1.JH378271 1699487 82146 + 3513951 I a score=403496.000000 s hg38.chr17_GL383564v2_alt 37871 32 + 133151 TCCCAATCTTCTCCACCA--------CAGCGAGACTCTCT s panTro5.chr17 16231765 32 + 83181570 TCCCAATCTTCCCCACCA--------CAGCGAGACTCTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139246 32 + 83442489 TCCTGATCTTCCCCACCA--------CAGCGAGACTCTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974247 32 + 4267968 TCCCAATCTTCTCCACCA--------CAGCGAGACTCTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954403 32 - 2193130 TTCGGATCTTCCCCACCA--------CAGCGAGACTCTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026962 32 - 77216781 TCTGGATCTTCCCCACCA--------CAGCGAGACTCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939559 32 - 80997621 TCTGGATCTTCCCCACCA--------CAGCGAGACTCTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995829 32 + 10377808 TCCGGATCTTCCCCACCA--------CAGCGAGACTCTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883277 32 - 8458610 TCCTGATCTTCCCCACCA--------CAGCGAGACTCTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64838989 32 + 75148670 TCCGGATCTTCCCCACCA--------CAGCGAGACTCTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062448 32 + 4244037 TCCGGATCTTCCCCAACA--------CAGCGAGACTCTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090329 32 + 4569836 TCCTGATCTTCCCTACCA--------CAGCGAGACTCTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059226 32 - 159171411 TCCTGATCTTCCCCACCA--------CAGCGAGACTCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1781633 32 + 3513951 TCCTGATCTTCTCCACCA--------CAGCGAGACTCTCT i saiBol1.JH378271 I 82146 C 0 s aotNan1.NW_018502359v1 6942331 32 - 7032639 TCCTGATCTTCCCCACCA--------CAGCGAGACTCTCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866437 31 - 65901067 GCTTTATGTCCCCC-TGA--------CAGAGAAACTCTCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950809 31 + 8555354 GCTTCATCTCCCTC-TCA--------CAGAGAAACTCTCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22748972 39 + 28711273 TCTTAATCTGTTCC-CCATCTATCCGCAGAGAAACTCCCT i otoGar3.GL873537 C 0 I 12986 s mm10.chr11 22034633 32 - 122082543 CCTTTGTCTCGTCCCCCA--------CAGAGAAACTCTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21367467 31 + 61074082 TCTTTATTTTCCTCA-CA--------CAGAGGGACTCCCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 347976 31 - 852752 CCTTCATGTTC-CCACCA--------CAGAGAAACTCCCT i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=2870760.000000 s hg38.chr17_GL383564v2_alt 37903 163 + 133151 GGAAAACACGCTGACAGAGAGTGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAG s panTro5.chr17 16231797 163 + 83181570 GGAAAACACACTGACAGAGAGTGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139278 163 + 83442489 GGAAAACACACTGACAGAGAGTGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974279 163 + 4267968 GGAAAACACGCTGACGGAGAGTGAGGCCCGCTACAGCTCTCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954435 163 - 2193130 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCAGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30026994 163 - 77216781 TGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939591 163 - 80997621 TGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1995861 163 + 10377808 TGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGTTGCAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883309 163 - 8458610 TGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839021 163 + 75148670 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAAGTGCAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062480 163 + 4244037 TGAAAACACACTGACGGAGAGTGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090361 163 + 4569836 GGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTACAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059258 163 - 159171411 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGGCCCAGGTGCAGTGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1781665 163 + 3513951 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCATGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6942363 163 - 7032639 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGTGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866468 163 - 65901067 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCCCGGCTGGAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950840 163 + 8555354 GGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCGCAGGTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCCGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTTCGGGCCCGGCTGGAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22761997 163 + 28711273 GGAAAACACACTGACAGAGACCGAGGCCCGCTACAGTTCCCAGCTGGCTCAGATGCAGTACAGGGTGATCAACGTGGAGGCCCAGCTGGGGAATATCCGCCGTGACCTGGAACGGCAGAACCAGGAGTACGAGGTGCTACGGGATGTGCGGGCCTGGCTGGAT i otoGar3.GL873537 I 12986 C 0 s mm10.chr11 22034665 163 - 122082543 GGAGAACACCCTGACAGAGAGTGAGGCTCGCTACAGCTCTCAGCTGTCCCAGGTGCAGTGCCTGATCACCAACGTGGAGTCCCAGCTTGGTGAGATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAGGTGCTGCTGGATGTCAAGGCCCGGCTGGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21367498 163 + 61074082 GGAGAACACGCTGACAGAGACTGAGGCACGCTACAGCTCTCAGCTGGGCCAGTTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCTGAGATCAGGAGTGATCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGGGCCCGGCTGGAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348007 163 - 852752 GGAAAACACGCTGAACGAGACCGAGGCCCGCTACAGCTCCCAGCTGGCCCAGGTGCAGTGCCTGATCAGCAGCGTGGAGTCCCAGCTGGCGGAGATCCGGGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCCCGGCTGGAG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1835042 4302 + 1920343 T a score=1352467.000000 s hg38.chr17_GL383564v2_alt 38066 77 + 133151 TGTGAGATCAACACATACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGACGTGT------------------TTGATGAA s panTro5.chr17 16231960 77 + 83181570 TGTGAGATCAACACATACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGACGTGT------------------TTGATGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139441 77 + 83442489 TGTGAGATCAACACATACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGACGTGT------------------TTGATGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974442 77 + 4267968 TGTGAGATCAACACATACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGACGTGT------------------TTGATGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954598 77 - 2193130 TGTGAGATCAACACTTACAGGAGCCTGCTGGAGAGTGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTGT------------------TTGATGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027157 77 - 77216781 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTAT------------------TTGATGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939754 77 - 80997621 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTAT------------------TTGATGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996024 77 + 10377808 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTAT------------------TTGATGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883472 77 - 8458610 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTAT------------------TTGATGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839184 77 + 75148670 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTGT------------------TTGATGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062643 77 + 4244037 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGATTGCAAGTGAGTA-----CATGGGCAGATGTAT------------------TTGATGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090524 77 + 4569836 TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTA-----CATGGGCAGATGTAT------------------TTGATGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059421 77 - 159171411 TGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CCTGGGCAGAGGTGT------------------TTGATGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1781828 77 + 3513951 TGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CCTGGGCAGAGGTGT------------------TTGATGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1830740 77 + 1920343 TGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----GCTGGGCAGAGGTGT------------------TTGATGTA i cebCap1.NW_016107730v1 T 4302 C 0 s aotNan1.NW_018502359v1 6942526 77 - 7032639 TGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----CCTGGGCAGAGGTGT------------------TTGATGTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866631 77 - 65901067 TGCGAGATCAACACGTACCGGAGCCTGCTGGAGGGTGAAGACTGCAAGTGAGTA-----CACAGCCAGAGGTTG------------------CTGATGAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2951003 77 + 8555354 TGCGAGATCAACACATACCGGGGCCTGCTGGAGGGTGAAGACTGCAAGTGAGTA-----CACAGCCAGAGGTGG------------------CTGATGAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22762160 100 + 28711273 GGTGAGATCAAAACATACCGGGACCTGCTGGAGAGCTAGGACTGCAAGTGAGTAGGGGTCACATGAAGTTGTTGTGGGGATGAGCAGTCTTTTTGATGGA i otoGar3.GL873537 C 0 I 113 s mm10.chr11 22034828 77 - 122082543 TGTGAGATCAACACGTATAGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTG-----CAGGGCTGGAAGGGT------------------TTGATGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21367661 77 + 61074082 TGTGAGATCAACACATACCGGGGTCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----GCCAGCGGGAGGTAT------------------CTGATGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348170 77 - 852752 GGCGAGATCAACACGTACCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTA-----TCCAGCTGGAGGTGT------------------TTGATAAA i dasNov3.JH570468 C 0 C 0 a score=5618793.000000 s hg38.chr17_GL383564v2_alt 38143 379 + 133151 ATGATGCACGTGTGAGTGTAACAGTT----AGAC--ACCATGCAAATATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTAGTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaatactgtattgcctagtgggtacattcc----cataggc---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtattccctccattctacaggaaa---gtaaactggggcttggagaaggtaa s panTro5.chr17 16232037 379 + 83181570 GTGATGCACGTGTGAGTGTAACAGTT----AGAC--ACCATGCAAATATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaatactgtattgtctagtgggtacattcc----cataggc---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcaatattccctccattctataggaaa---gtaaactggggcttggagaaggtaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139518 379 + 83442489 GTGATGCACGTGTGAGTGTAACAGTT----AGAC--ACCATGCAAATATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaatactgtattgtctagtgggtacattcc----cataggc---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtattccctccattctataggaaa---gtaaactggggcttggagaaggtaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974519 379 + 4267968 GTGATGCACGTGTGAGTGTAACAGTT----AGAC--ACCATGCAAATATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGTTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTGCTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaatactgtattgtctggtgggtacattcc----cataggc---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtattccctccattctataggaaa---gtgaactggggcttagagaaggtaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1954675 379 - 2193130 GTGATGCACATGTGACGGTCATAGTT----AGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTATGATAATATGCATGACTGCATGA----TACGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacattcc----cataggc---------tacctgatttgatctt------ctaattacaaccaagtgggctgga----tcagtattccctccattctataggaaa---gtaaactggggcttggagaaggtaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027234 379 - 77216781 GCGGTGCACGTGTGAGTGTAATACTC----AGAC--ACAATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAATATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTGTGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacatttc----catagac---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtatttcctccaatctataggaaa---gtaaactggggcttggagaaggtaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27939831 379 - 80997621 GCGGTGCACGTGTGAGTGTAATACTC----AGAC--ACAATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAATATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTGTGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacattcc----catagac---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtatttcctccaatctataggaaa---gtaaactggggcttggagaaggtaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996101 379 + 10377808 GCGGTGCACGTGTGAGTGTAATACTC----AGAC--ACAATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAATATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacattcc----catagac---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtatttcctccaatctataggaaa---gtaaactggggcttggagaaggtaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883549 361 - 8458610 GCAGTGCACGTGTGAGTGTAATACTC----AGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCC-----------------ATGGTTTGGTAGCAAGAGTTGTTTGAGGTACAAACTGAAATTGCACTGCCAAGTC--TGCATTCTACTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacattcc----catagac---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtatttcctccaatctataggaaa---gtaaactggggcttggagaaggtaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839261 379 + 75148670 GTGATGCACGTGGGAGTGTAATACTC----AGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTATGATCATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacattcc----catagac---------tacctgatttgatctt------ataattaccaccaggtgggctgga----tcagtatttcctccaatctatcggaaa---gtaaactggggcttggagaaggtaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2062720 377 + 4244037 GCAATGCACGTGTGAGTGTAATACTC----AGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATAGCCATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTGCAAACTGAAATTGCACTGCCAAGTC--TGCATTCTACTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccgtattgtctagtgggtacattcc----catagac---------tacctgatctgatctt------ataattaccaccaggtgggctgga----tcagtatttcctccaatctataggaaa---gtaaactggggcttggagaaggtaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090601 379 + 4569836 GTGATGCACGTGTGAGTGTAATACTC----AGAC--ACCACACAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGCCATCATTTAAAACAT-AAATGGTTTAGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACTGCCAAGTCTTTGCATTCTACTATGATAATATGCATGACTGCATGA----TATGTGATCaatg-----ccttactttttacaataccatattgtctagtgggtacattcc----catagac---------tacctgatttgatctt------ataattaacaccaggtgggctgga----tcagtatttcctccaatctataggaaa---gtaaactggggcttggagaaggtaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059498 384 - 159171411 GCGATGCACATGTGAGTGTCCTATTCAGTTAGAC--ACCATGCAAAGATTGCATACCTTGGAAAGTAAATTATGCCTTCACGCTAGACATGCTCAAACAGAACTCAGACAACATAATATGGACATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTCATTGATGTACAAACTGAAATTGCACAGCCAAGTCTTTGCATTCTACT---ATAACATGCATGATTACATGA----TATGTGATtaata-----ccttaccttttacaatactgtattgtgtagtgggcacattcccatacatagac---------tatctaatttgatctt------gtaattaccaccaggtgggctgga----tcagaattccctgcattttataggaaa---ataaactgggtcttggagaaggcaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1781905 383 + 3513951 GCGATGCACATGTGAGTGTACTATTCAGGTAGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGACATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACAGCCAAGTCTTTGCATTCTACTATGATAACATGCGTGATTGCATGA----TATGTGATtaatg-----ccttaccttttacaatactgtattctgtagtgggtacattcc----catagac---------tacctaatttgatctt------gtcattaccaccaggtgggctgga----tcagaattccctgcgttctataggaaa---ataaactgggtcttagagaaggcaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1830817 383 + 1920343 GCGATGCACATATGAGTGTACTATTCAGTTAGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAATATAATATGGACATCATTTAAAACAT-AAATGGTTTGGCAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACAGCCAAGTCTTTGCATTCTACTATGATAACATGCATGATTGCATGA----TATGTGATtaatg-----ccttaccttttacaatactgtattgtgtagtgggtacattcc----cacagac---------tacctaatttgatctt------gtaattaccaccaggtgggctgga----tcagaattccctgcattctattggaaa---ataaactgggtcttggagaaggcaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6942603 383 - 7032639 GCGATGCACATGTGAGTGTACTATGCAGCTAGAC--ACCATGCAAAGATTGCATACCTTGGAAAGGAAATTATGCCTTCACACTAGACATGCTCAAACAGAACTCAGACAACATAATATGGACATCATTTAAAACAT-AAATGGTTTGGTAGCAAGAGTTGTTTGATGTACAAACTGAAATTGCACAGCCAAGTCTTTGCATTCTACTATGATAACATGCATGATTGCATGA----TATGTGATtaatg-----ccttaccttttacaatactgtattgtgtagtgggaacattcc----catagac---------tacctaatttgatctt------gtaattaccaccaggtgggctgga----tcagaattccctgcattctataggaaa---ataaactgggtcttggagaaggcaa i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35866708 391 - 65901067 GCTGTGCACATGTGAATCTATTGCTCAGTTGGGC--ACTGTGCAAAGATTGCACAGCTGGGAAAGGAAATTATGCCTTCACACAAGACATGCTTAAACAGGGCCCAGAAAACATAATATGGGCATCATTTAAAACATAAAATGGTTTGGTAGCAGGAATTATTTGATACATAAACTGAAATTGTACAGCCAAGTCTTTGCAGTCTACTATGATGACGTGTATGATTACATGATATGTATGCGATGaata-----tcttactttttacaatactgcattgtgcagaggttgcgtttc----catacgc---------taccttatttgacctt------ataattaccaccaggtagcttgag----gtagtatttccctcattctataggtgaaggaggaactggggcttggagaaggcaa i micMur3.chr16 C 0 I 131 s proCoq1.NW_012135969v1 2951080 383 + 8555354 GCTGTATACATGTGAGTCTACTGCTCAGCTGGGC--ACTGTGCAAAGATTGCATAGCTGGGAAAGGAAATTATGCCTTCACACCAGACATGCTCAAACAGAGCTCAGAAAACATAATATGATCATCACTTAAAACATAAAATGGTTTGGTAGCAACAATTGTTTGATACATAAACTGAAATTGTACAGCCAAGTCTTTGCAGTCTA-TGTGATGACGGGTATGATTGCATGA----CATGCGATCGGTG-----Tcttactttttacaatactgtattgtgcagagggtgcctttc----catactc---------taccttctttggcctt------ataattaccaccgggtagcttggg----gcagtatttccctcattctataggtga---aggaactggggcttggagaaggtaa i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22762373 389 + 28711273 GCTGCACACA--TCAGTATTCTGCTCAGTTGGGC--ACTGTGCTAAGGTTGTACAGCTCACCAAGGAAATT-TGCCCTCACTCTAGACATGCTCAGACAGAATCTGGAAAACATAACATGGCCATCATTTCAAACCTAAAATGGTTTGCTAGCAAGAATTGTTTGCTATATAAAC------TGTACAGCCGAATCTTTGCATTCTACTGGGCTGACATGTATGATCTCATGC----TATGCAGTCAATG-----CCTTAGTTTTTACAAATCTGCATTGTGGAGGGGGTGCACCTC----TACACACAGAAGGGGGTGCcttatttggcctcatgttaataattatcactaggtagcctgga----tgactatttccctcatacttgaggtga---aggaact-gggcttggagaaggtaa i otoGar3.GL873537 I 113 C 0 s mm10.chr11 22034905 352 - 122082543 --AGCTCCCAATGGAGGAGAAGACTC----AGGTGGACCGCCCAGGGATTGCCTATATCAGGAAAGAAATGACATCTTCCCACCAGACATGCTCAAACAGAGCTTAGAAA--ATACTATGGCCACCATTAAAAACATCAAATGGGTTGTTAGCA-CAGTTGTTTG-TGTACAGAGTGAAATTTCACAGCTAC-TCTTTGTAGTGTACTATGATAACATGTAGGATCATGTGA-------------ACTG-----TCT--CTTTTTACAATACTTCATTGTACAGAGAG-------C----TTAAGCT---------TATCTTATCTGGCTGT------GTTATTGCCCTTGGGTAGGCTGGA----ACTGTAGTCCTTCAGTTCTCTCTGTAA---GAAAAC-GGGGCTTGGAATAG---- i mm10.chr11 C 0 C 0 s canFam3.chr9 21367738 327 + 61074082 ---------------GTGTGCTTCTCAGTTGGAC--TCCATAC--------------TTTCAAAGGAAATTATGCCTCCACACCAGACATGATCAAATAGAACTCAGAAAACACAATATGGCCATCATT--AAACAT-TCA-------------------GTTTGATTCACAAATGGAAATTGTACAACCAATCCTTTGCATCCTACTGTGATCCTATA-----------GA----TATAAGATCaatgatattttttacattttataagactgtattgcgtagagggtgcatctc----cgtacat---------taccttatctgacctt------atagttactgccaagcaggttgga----tcagtattctctccattctgtaggtga---agaaactgggacttggagaagctaa i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348247 376 - 852752 GCCATATGCACAGGAGTGTCCTGCTG-ATTGGAC--TCCATTCAAAGATTGCACGCCTGGGAATGGAAACCATGCCTCCCCTCCAGACATGCTCAAACAGAACTCAGACAACACAGTATGACCATCATTAAAAATATGAAGTTGTCTGATGGCAAGAAGAGCTTGAT--ACAAACTGAAATTGTATAGCCAATTCTTTGCATCCTA---GGGTAATAT-----------TGA----CATGTGATCaatgatatttccttcattttataatactgactggtatagagagagcatttt----caaccac---------ttacctatctgacctt------ataataaccactaggcaggctggatcagtcagtatccttcctacactataggtaa---agaaactggaacttggagaaattaa i dasNov3.JH570468 C 0 C 0 a score=13365.000000 s hg38.chr17_GL383564v2_alt 38522 1 + 133151 a s panTro5.chr17 16232416 1 + 83181570 a i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139897 1 + 83442489 a i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974898 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955054 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027613 1 - 77216781 a i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940210 1 - 80997621 a i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996480 1 + 10377808 a i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883910 1 - 8458610 a i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839640 1 + 75148670 a i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063097 1 + 4244037 a i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090980 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059882 1 - 159171411 a i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782288 1 + 3513951 a i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831200 1 + 1920343 a i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6942986 1 - 7032639 a i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2951463 1 + 8555354 a i proCoq1.NW_012135969v1 C 0 I 112 s canFam3.chr9 21368065 1 + 61074082 g i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348623 1 - 852752 a i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22035257 0 - 122082543 C e micMur3.chr16 35867099 131 - 65901067 I e otoGar3.GL873537 22762762 0 + 28711273 C a score=992465.000000 s hg38.chr17_GL383564v2_alt 38523 82 + 133151 tgactcac-cccatgtcatcagtttggcatgaatggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg s panTro5.chr17 16232417 82 + 83181570 tgactcac-cccatgtcatcagtttggcatgaatggatttgagagtagacatcagagtttcagagtttctgtca---accttgg-tg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139898 82 + 83442489 tgactcac-cccatgtcatcagtttggcatgaatggatttgagagtagacatcagagtttcagagtttctgtca---accttgg-tg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974899 82 + 4267968 tgactcac-cccatgtcatcagtttggcatgaatggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955055 82 - 2193130 tgactcac-cccatgtcatcagtttggcatgaatggatttgagagtagacgtcagagtttcagcgtttctgtct---accttgg-tg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027614 83 - 77216781 tgactcaaccccatgtcatcagtttggcatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940211 83 - 80997621 tgactcaaccccatgtcatcagtttggcatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996481 82 + 10377808 tgactcaa-cccatgtcatcagtttggcatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883911 82 - 8458610 tgactcaa-cccatgtcatcagtttggcatgaacggatttgagagtagacgtcagagtttcagagtttctgtct---accttgg-tg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839641 82 + 75148670 tgactcac-cccatgtcatcagtttggcatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063098 82 + 4244037 tgactcaa-cccatgtcatcagtttggcatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2090981 82 + 4569836 tgattcac-cccatgtcatcagtttggcatgaatggatttgagagtagacatcagagtttcagagtttctatct---accttgg-tg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059883 82 - 159171411 tgactcac-ccaatgttaccagtttggcatgaacggatttgaaagtagacatcagagtttcagagtttctgtct---accttgg-tg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782289 82 + 3513951 tgactcac-ccagtgttaccagtttggcatgaatggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831201 83 + 1920343 tgactcac-ccaatgttaccagtttggtatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttggttg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6942987 82 - 7032639 tgactcac-ccaatgttaccagtttggcatgaacggatttgagagtagacatcagagtttcagagtttctgtct---accttgg-tg i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22762762 83 + 28711273 --ccttgc-tcaaggtcaccagctagaaatggccagttttgagagcagaaatcagggtttcagagtctctgttTAGCACCTTGG-CA i otoGar3.GL873537 C 0 T 13082 s mm10.chr11 22035257 58 - 122082543 ------AC-TCAAGATCCACAGCTAGGAGCGTATTCATTTGGGGGTGTCTGT---------AGTACTTGTGGCT------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21368066 84 + 61074082 tgactttc-ccaagatcactagctaggaatggacagtgttaggagtcaataccagAGTTCTAGAGTTTCTGTCT-AGAACTTAG-GG i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 348624 77 - 852752 cgacttgc-ccaaggttatcagctaggaatagacgaagttgggactagaagccagatttttggagtttctgttt---a-----g-tg i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2951464 112 + 8555354 I e micMur3.chr16 35867099 131 - 65901067 I a score=308980.000000 s hg38.chr17_GL383564v2_alt 38605 33 + 133151 ctc---------taTGGCAGGGAGACCATTAACAATTTGAGT s panTro5.chr17 16232499 30 + 83181570 ctc---------tatGGCAGGGAGACCATTAACAATTTG--- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16139980 30 + 83442489 ctc---------taTGGCAGGGAGACCATTAACAATTTG--- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3974981 30 + 4267968 ctc---------taTGGCAGGGAGACCATTAACAATTTG--- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955137 30 - 2193130 ctc---------taTGGCAGGGAGACCATTAACAATTTG--- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027697 30 - 77216781 ctc---------taTGGCAGGGAGACCATGAACAATGTG--- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940294 30 - 80997621 ctc---------taTGGCAGGGAGACCATGAACAATGTG--- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996563 30 + 10377808 ctc---------taTGGCAGGGAGACCATGAACAATGTG--- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1883993 30 - 8458610 ctc---------taTGGCAGGGAGACCATGAACAATGTG--- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839723 30 + 75148670 ctc---------tacGGCAGGGAGACCATTAACAATGTG--- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063180 30 + 4244037 ctc---------tatGGCAGGGAGACCATGAACAATGTG--- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091063 30 + 4569836 ctc---------tatGGCAGGGAGACCATTAACTATGTG--- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059965 32 - 159171411 ctc---------tacGGCAAGAGGACCATTCACAATTTGAG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782371 32 + 3513951 ctc---------tATGGCAGGGAGACCATTCACAACTTGAG- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831284 32 + 1920343 ctc---------TACGGCAGGGGGACCATTCACAATTTGAG- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943069 32 - 7032639 ctc---------tacGGCAGGGGGACCATTCACAATTTCAG- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22749763 30 + 28711273 CCC---------TATGACTGGGAGGCCATCAGTGATGTG--- i otoGar3.GL873537 T 13082 I 1 s mm10.chr11 22035315 30 - 122082543 CTC---------TCTAATAGAGAGAGGTTTAGTGATTTA--- i mm10.chr11 C 0 I 1 s canFam3.chr9 21368152 30 + 61074082 CTG---------TGTAGAAGGAAGATCATTAGCAGTTTG--- i canFam3.chr9 I 2 I 1 s dasNov3.JH570468 348701 29 - 852752 ctctggccagtgtacaacaGGGAGGCCAT------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2951464 112 + 8555354 I e micMur3.chr16 35867099 131 - 65901067 I a score=216714.000000 s hg38.chr17_GL383564v2_alt 38638 18 + 133151 TAGTTATCTTTGTAGCAG s panTro5.chr17 16232529 17 + 83181570 -AGTTATCTTTGTAGCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140010 17 + 83442489 -AGTTATCTTTGTAGCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975011 17 + 4267968 -AGTTATCTTTGTAGCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955167 17 - 2193130 -AGTTATCTTTGTAGCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027727 17 - 77216781 -AGCTATCTTTGTAGCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940324 17 - 80997621 -AGCTATCTTTGTAGCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996593 17 + 10377808 -AGCTATCTTTGTAGCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884023 17 - 8458610 -AGCTATCTTTGTAGCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839753 17 + 75148670 -AGCTATCTTTGTAGCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063210 17 + 4244037 -AGCTATCTTTGTAGCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091093 17 + 4569836 -AGTTATCTTTGTAGCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46059997 17 - 159171411 -AGTTATCTTTGTAGCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782403 17 + 3513951 -AGTTATCTTTGTAGCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831316 17 + 1920343 -AGTTATCTTTGTAGCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943101 17 - 7032639 -AGTTATCCTTGTAGCAG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2951576 18 + 8555354 TAGTTGGCTTTGTAGCAG i proCoq1.NW_012135969v1 I 112 C 0 s otoGar3.GL873537 22749794 17 + 28711273 TATTTACCTGCGTAGGT- i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22035346 14 - 122082543 -AGGTA---TTGTAGTAG i mm10.chr11 I 1 I 1 s canFam3.chr9 21368183 18 + 61074082 TAGGGAGCTTTACAGTAG i canFam3.chr9 I 1 C 0 e micMur3.chr16 35867099 131 - 65901067 I e dasNov3.JH570468 348730 0 - 852752 C a score=614997.000000 s hg38.chr17_GL383564v2_alt 38656 41 + 133151 GGGAGTCTGT-GCCTTTTCTGTTCTAGGCCAGGTCAAGTCCC s panTro5.chr17 16232546 41 + 83181570 GGGAGTCTGT-GCCTTTTCTGTTCTAGGCCAGGTCAAGTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140027 41 + 83442489 GGGAGTCTGT-GCCTTTTCTGTTCTAGGCCAGGTCAAGTCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975028 41 + 4267968 GGGAGTCTGT-GCCTTTTCTGTTCTAGGCCAGGTCAAGTCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955184 41 - 2193130 GGGAACCTGT-GCCTTTTCTGTTCTAGGCCAGGCCAAGTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027744 40 - 77216781 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCTAGGCCAAGTCC- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940341 40 - 80997621 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCTAGGCCAAGTCC- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996610 40 + 10377808 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCTAGGCCAAGTCC- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884040 40 - 8458610 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCTAGGCCAAGTCC- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839770 40 + 75148670 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCTAGGCCAAGTCC- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063227 40 + 4244037 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCTAGGCCAAGTCC- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091110 40 + 4569836 GGGAGCCTGT-GCCTTCTCTGTTCTAGGCCAGGCCAAGTCC- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060014 40 - 159171411 GGGAGCCCGT-GCCTTCTCTGTTCCAGGCCAGGCCAAGTCC- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782420 40 + 3513951 GGGAGCCCGT-GCCTTCTCTGTTCCAGGCCAGGCCAAGTCC- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831333 40 + 1920343 GGGAGCCTGT-GCCTTCTCTGTTCCAGGCCAGGCCAAGTCC- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943118 40 - 7032639 GGGAGCCCGT-GCCTTCTCTGTTCCAGGCCAGGCCGAGTCC- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35867230 40 - 65901067 GGGAGCCCGC-GCCCTCTCTGTCCTAGGCCAGGCCAAGTCC- i micMur3.chr16 I 131 I 25 s proCoq1.NW_012135969v1 2951594 39 + 8555354 -GGAGCCTGT-GCCTTCTCTGTTCTAGGCCAGGCCAAGTCC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22749811 34 + 28711273 GGGAGCCTGC-ACCTTCT-----CTACGTGGGGCCAAGTC-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035361 40 - 122082543 GGGGACCTGG-GCAGTCCCTGTTCTAGGCCAGGGCAAGTTC- i mm10.chr11 I 1 C 0 s canFam3.chr9 21368201 41 + 61074082 GTGAGCCTGTGGCTTTCTCTGTTACAGGTGAGGTCAAATCC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348730 29 - 852752 ------------CGTTCTCTGTTACAGACCAGGATGAGTCC- i dasNov3.JH570468 C 0 C 0 a score=288598.000000 s hg38.chr17_GL383564v2_alt 38697 30 + 133151 TTGACCCAGGCATTCTTACCCTT-GGGGATA s panTro5.chr17 16232587 30 + 83181570 TTGACCCAGGCATTCTTACCCTT-GGGGATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140068 30 + 83442489 TTGACCCAGGCATTCTTACCCTT-GGGGATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975069 30 + 4267968 TTGACCCAGGCATTCTTACCCTT-GGGGATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955225 26 - 2193130 GAG----AGGCATTCTTACCCTT-GGGGATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027784 27 - 77216781 -TGAC--AGGCATTCTTACCCTT-GGGGATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940381 27 - 80997621 -TGAC--AGGCATTCTTACCCTT-GGGGATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996650 27 + 10377808 -TGAC--AGGCATTCTTACCCTT-GGGGATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884080 27 - 8458610 -TGAC--AGGCATTCTTACCCTT-GGGGATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839810 27 + 75148670 -TGAC--AGGCATTCTTACCCTT-GGGGATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063267 27 + 4244037 -TGAC--AGGCATTCTTACCCTT-GGGGATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091150 27 + 4569836 -TGAC--AGGCATTCTTACCCTT-GGGGATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060054 27 - 159171411 -TGAC--AGGCATTCTTACCCTT-GGGGATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782460 28 + 3513951 -TGAC--AGGCATTCTTATCCTTGGGGGATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831373 27 + 1920343 -TGAC--AGGCATTCTTACCCTT-GGGGATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943158 27 - 7032639 -TGAC--AGGCATTCTTACCCTT-GGGGATA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2951633 25 + 8555354 -TGAC--AGGTATTC-CACTCTT-GGGGAC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22749845 26 + 28711273 TTGGT--GGGCTTTG-CACTCCT-TGGGTC- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035401 25 - 122082543 -TAAC--AGG-ATTTCTACTCTT-GGGGAC- i mm10.chr11 C 0 C 0 s canFam3.chr9 21368242 22 + 61074082 --CAC--AGTAATTC-CACTCTT-GGGG--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348759 25 - 852752 -TGAT--AGACATTT-CACTCTT-GGGGTC- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35867270 25 - 65901067 I a score=4008227.000000 s hg38.chr17_GL383564v2_alt 38727 240 + 133151 TCTCTGGCATATGATTTTAAAATTGCCCTTAACTCACT-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGCCCATCGGACCCTGTCTCTCCAATCCCTGTACCTCTTGTGTCCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGGAATGCCAGAGGAG s panTro5.chr17 16232617 240 + 83181570 TCTCTGGCATATGATTTTAAAATTGCCCTTAACTCACT-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGCCCATCGGACCCTGTCTCTCCAATCCCTGTACCCCTTGTGTCCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGGAATGCCGGAGGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140098 240 + 83442489 TCTCTGGCATATGATTTTAAAATTGCCCTTAACTCACT-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGCCCATCGGACCCTGTCTCTCCAATCCCTGTACCCCTTGTGTCCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGGAATGCCGGAGGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975099 240 + 4267968 TCTCTGGCATATGATTTTAAAATTGCCCTTAACTCACT-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGCCCATCGGACCCTGTCTCTCCAATCCCTGTACCCCTTGTGTCCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGGAATGCCGGAGGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955251 240 - 2193130 TCTCTGGCATATGATTTTAAAATTTCCCTTAACTCACC-TTTCCACATAATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGCCCATCGGACCTTGTGTCTCCAATCCCTGTACCCCTTGCGTCCCTCCTGCCCCCTGCACACCCTGTATCCCACGCCCCCGCTGTGGACCCTGCAATTCCTTCGTGCGCTAGAACCTAGGGAATGCCGGAGGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30027811 240 - 77216781 TCTCTGGCATATGATTTTAAAATTTTCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATCGGACCCTGTGTCTCCAATCCCTGCACACCTTGCGTTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCCGGAGGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940408 240 - 80997621 TCTCTGGCATATGATTTTAAAATTTTCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATCGGACCCTGTGTCTCCAATCCCTGCACACCTTGCGTTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCCGGAGGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996677 240 + 10377808 TCTCTGGCATATGATTTTAAAATTTTCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATCGGACCCTGTGTCTCCAATCCCTGCACACCTTGCGTTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCCGGAGGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884107 240 - 8458610 TCTCTGGCATATGATTTTAAAATTTCCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATCGGACCCTGTGTCTCTAATCCCTGCACCCCTTGCATTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGTCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCTGGAGGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64839837 240 + 75148670 TCTCTGGCATATGATTTTAAAATTTCCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATTGGACCCTGTGTCTCCAATCCCTGCACTCCTTGCGTTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCCAGAGGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063294 240 + 4244037 TCTCTGGCATATGATTTTAAAATTTCCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATCGGACCCTGTGTCTCCAATCCCTGCACCCCTTGCGTTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCTGGAGGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091177 240 + 4569836 TCTCTGGCATATGATTTTAAAATTTCCCTTAACTCACC-TTTCCACATCATTC-TTTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACGACCAACGCGTGCAGCAAGTCCATCGGACCCTGTGTCTCCAATCCCTGCACCCCTTGCATTCCTCCTGCCCCCTGCACACCCTGTGCCCCACGCCCCCGCTGTGGGCCCTGCAATTCCTTCGTGCGCTAGAACCTAGGAAATGCCGGAGGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060081 235 - 159171411 TCTCTGGCATTTGATTTTAAAATCTGCCTTAACTCACC-TTTCCACACCATTC--TTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACAACCAACGCGTGCAGCAAGCCCATCGGACCCTGTGTCTCCAATTCCTGCACCCCTTGCATCCCTCCTGCCCCCTGCACACCCTGCGCCCCACGCCCCCGCTGTGGACCCTGCAACTCCTTTGTGCGCTAGAACCT----AATGCCGGAGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782488 235 + 3513951 TCTCTGGCATTTGATTTTAAAATCTCCCTTAACTCACC-TTTCCACATCATTC--TTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACAACCAACGCGTGCAGCAAGCCCATCGGACCCTGCATCTCCAATCCCTGCACCCCTTGCGTGCCTCCTGCCCCCTGCACACCCTGCGCCCCACGCCCCCGCTGTGGACCCTGCAACTCCTTTGTGCGCTAGAACCT----AATGCCGGAGGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831400 235 + 1920343 TCTCTGGCATTTGATTTTAAAATCTCCCTTAACTCACC-TTTCCACATCATTC--TTTGTCTCCAGTCTGCCCAGCAACCCCTGTGC----CACAACCAACGCGTGCAGCAAGGCCATCGGACCCTGTGTCTCCAATCCCTGCACCCCTTGCGTCCCTCCTGCCCCCTGCACACCCTGTGCCCCACGTCCTCGCTGTGGACCCTGCAACTCCTTTGTGCGCTAGAAGCT----AATGCCGGAGGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943185 234 - 7032639 TCTCTGGCATTTGATTTTAAAATCTCCCTTCACTCACC-TTTCCACATCATT---TTTGTCTCCAGTCTGCCCAGCAATCCCTGTGC----CACAACCAACGCGTGCAGCAAGCCCATCGGACCCTGTGTCTCCAATCCCTGCACCCCTTGCGTCCCTCCTGCCCCCTGCACACCCTGCGCCCCACGCCCCCGCTGTGGACCCTGCAACTCCTTTGTGCGCTAGAACCT----AATGCCGGAGGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35867295 238 - 65901067 TCTCTGGTATAGGGTTTT-AAGTCTCCTTCCACTCACC-TCTCCACATCATTC--TCTGTCTCCAGGCTGCCCTGCAACCCCTGCGC----CACGACCAACGCGTGCGGCAAGCCCATCGGGCCCTGCGTCTCCAATCCTTGCACCCCCTGTGCCCCTCCTGTCCCCTGCACCCCCTGTGTCCCACGCCCCCGCTGTGGGCCCTGCAACTCCTTCGTGCGCTAGAACCCAGGGGATGCCGGAGGAG i micMur3.chr16 I 25 I 139 s proCoq1.NW_012135969v1 2951658 238 + 8555354 TCTCTGGTATATGATTTT-AAATCTCCTTCCAGTCACC-TTTCCACATCATTC--TCTGTCTCCAGGCTGCCCTGCAACCCCTGCGC----CACGACCAACGCGTGCGGCAAGCCCATTGGGCCCTGCGTCTCCAGTCCCTGCACACCCTGTGCACCTTCTGTCCCCTGCAGCCCCTGTGTCCCACGCCCCCGCTGTGGGCCCTGCAACTCCTTTGTGCGCTAGAACCCAGGGGATGCCAGAGGAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22749871 238 + 28711273 TCTCTTGTATGTAGTTTT-GAATCCCC--CCGCTTGCT-TTTTTACATTATTC-TTTTGTCTCCAGGCTGCCTTGCAACCCTTGTGCTACATACAACCAATGTGTGAGGCAAGCTGATGCGGTCTCTCATCCCCAGTCCCTGTACCCCCTGCACCCCTCCTGCCCCCTTAATTCCCTATGCCCCATGTCCCCACTGTGGGCCCTGCAATCCTT---TGCATTAGAACCCCGGTGAAACCAGAGGTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035426 233 - 122082543 TCTTTGATATGTGATTTG--------CCTTATCTCAAC-TCTCTGTTCTACTATTTTTTTTTCTAGGCTACCTTGCAACCCCTGTGC----CACAAGCAATGCATGCGGCAAGCCCATTGGGCCCTGCGTCTCCAATCCCTGTGTCCCCTGCCCACCCCCTGCCCCTTGCACACCTTGTGTCCCACGTCCCCGCTGTGGGCCATGCAACTCCTTTGTACGCTAGAACCTGGGGGATGTCAACAGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21368264 219 + 61074082 TCTCTCTTATATATTCTACAAGCCTCCCTCAATTCACCTTTTCTGCATCATTC--TTTTTCTCCAGGCTGCCCTGCAACCCTTGTGC----CACAACGAATGCATGTGG---ATCTTCCGGGTCCTGTGTCTCTAATTCCTG------------------TGCCCCCTGCACGCCTTGTGCCCCCCGCCCACGCTGTGGGCCTTGCAACTCCTTCGTCCGATAAGGCCCATGGGCTGCCAGAGGAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 348784 238 - 852752 TTGCTGGTATATGATTTC-GAACCTCCCTCAACTCACC-TTTCCCCACCATTC--TTTGTCTCCAGGCTGCCGTGCAACCCCTGCGC----CACAACCAATGCATGTGGCAAACCCATCGGGCCCTGTGTCTCCAGTGCCTGTGCCCCCTGCGGCCCCCCTGCTGCCTGCATGCCCTGTGCCCCCCGGCCCCGCTTCGGACCCTGCAATTCCTTTGTGCGCTAGAGCCCAGGGACTGCCAGCGGAG i dasNov3.JH570468 C 0 C 0 a score=174476.000000 s hg38.chr17_GL383564v2_alt 38967 12 + 133151 CAAGGATGCAGG s panTro5.chr17 16232857 12 + 83181570 CAAGGATGCAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140338 12 + 83442489 CAAGGATGCAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975339 12 + 4267968 CAAGGATGCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955491 12 - 2193130 CAAGGATGCAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028051 12 - 77216781 CAAGGATGCAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940648 12 - 80997621 CAAGGATGCAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996917 12 + 10377808 CAAGGATGCAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884347 12 - 8458610 CAAGGATGCAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64840077 12 + 75148670 CAAGGATGCAGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063534 12 + 4244037 CAAGGATGCAGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091417 12 + 4569836 CAAGGATGCAGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060316 12 - 159171411 CAAGGATGCAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782723 7 + 3513951 CAAGGAT----- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831635 12 + 1920343 CAAGGACGCAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943419 12 - 7032639 CAAGGATGCAGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2951896 12 + 8555354 TGAGGACGCAGG i proCoq1.NW_012135969v1 C 0 I 35 s otoGar3.GL873537 22750109 11 + 28711273 GGAGGATGTGG- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035659 12 - 122082543 CAAGGACACTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21368483 12 + 61074082 CAAGGAGGCAGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349022 12 - 852752 CAAGGATGCAGG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35867533 139 - 65901067 I a score=909632.000000 s hg38.chr17_GL383564v2_alt 38979 70 + 133151 GCCCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC s panTro5.chr17 16232869 70 + 83181570 GCCCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140350 70 + 83442489 GCCCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975351 69 + 4267968 GCCCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGGGCC-GGAAA--CATCATTTGCATGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955503 70 - 2193130 GCCCAGGACTCCAGAGCTGCGACCTGGCT---CTGGTTCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028063 70 - 77216781 GCCCAGGACTGCAGAGCTGTGACCTGGCT---CTGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940660 70 - 80997621 GCCCAGGACTGCAGAGCTGTGACCTGGCT---CTGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996929 70 + 10377808 GCCCAGGACTGCAGAGCTGTGACCTGGCT---CTGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884359 70 - 8458610 GCCCAGGACTGCAGAGCTGTGACCTGGCT---CTGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64840089 70 + 75148670 GCCCAGGACTGCAGAGCTGTGACCTGGCT---CTGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063546 70 + 4244037 GCCCAGGACTGCAGAGCTGTGACCTGGCT---CTGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091429 70 + 4569836 GCCCAGGACTGCAGAGCTGTGACCTGGCT---ATGGTTTA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060328 70 - 159171411 GCCCAGGACTCCAGAGCTGTGACCTGGAT---CTGGATCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782730 70 + 3513951 GCTCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831647 70 + 1920343 TCCCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGGGCCTGAAAA--CATCATTTGCATGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943431 70 - 7032639 GCCCAGGACTCCAGAGCTGTGACCTGGCT---CTGGTTCA----ACAAAAGGAGACTGAAAA--CATCATTTGCATGGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22750120 63 + 28711273 GCCCAGAGCTACAGAGCTTGCACCAGGCTGAGCTCATTCA----ATGACAA-----TGAATA--CACAGTTTGC----- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035671 72 - 122082543 GCTTAGCACTCCAGATGGCTGACCTGGTT---CTGGTTCC----ACAAAAACAGACGTAAAACCCACAAACCTAATGGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21368495 72 + 61074082 GCCCAAGGTTCCAGAACTTTGACCCGGCA---CTAGTTCATTCGACAAAAAGGGGCAGAAAA--CACA--TTGTGTAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349034 74 - 852752 GTCCAGGGCTCCAGAGCGCTGACCCGGCC---GTGGTTTGTTCGATCAAAGGGGCCTGAAAA--CACAATCTGCGTGGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2951908 35 + 8555354 I e micMur3.chr16 35867533 139 - 65901067 I a score=1562490.000000 s hg38.chr17_GL383564v2_alt 39049 127 + 133151 TGGAGTTGCCCGCGTAAGGCAGCCAAGAAACTCACCCAAAGCCTGTAGCCTCCCCAA-CTACTCCAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC s panTro5.chr17 16232939 127 + 83181570 TGGAGTTGCCCGAGTAAGGCAGCCAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCCAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140420 127 + 83442489 TGGAGTTGCCCGAGTAAGGCAGCCAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCCAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975420 127 + 4267968 TGGAGTTGCCCGAGTAAGGCAGCCAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCCAGACTGT--CCTGCTCACCCT-TTCCTTCCTAGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955573 127 - 2193130 TGGAGTGGCCCCAGTAAGGCAGCCAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCCAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028133 127 - 77216781 TGGAGTGGCCCCCGTAAGGCAGCCAAGAAACTTACCCAAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940730 127 - 80997621 TGGAGTGGCCCCCGTAAGGCAGCCAAGAAACTTACCCAAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1996999 127 + 10377808 TGGAGTGGCCCCCGTAAGGCAGCCAAGAAACTTACCCAAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884429 127 - 8458610 TGGAGTGGCCCCCGTAAGGCAGAGAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64840159 127 + 75148670 TGGAGTGGCCCCCGTAAGGCAGCCAAGAAACTCACCCTAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGATTACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCAATGCTCACCCAGAGAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063616 127 + 4244037 TGGAGTGGCCCCCGTAAGGCAGAGAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091499 127 + 4569836 TGGAGTGGCCCCAGTAAGGCAGCCAAGAAACTCACCCAAAGCCTGCAGCCTCCCCAA-CTACTCTAGACTGT--CCTGCTCACCCT-TTCCTTCCTGGGGGTCTGTTCCTTCCTATGCTCACCCAGAGAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060398 127 - 159171411 TGGAGTGGCCCCAGTAAGGCAGCCAAGAAACTTACCCAAAGCCTGCAGCCTCCCCAA-CTACTCCAGCCTGT--CCTGCTCACTCT-TTCCTTCCCGGAGGTCTGTTCCTTCTTGTGCTCACCCAGACAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782800 127 + 3513951 TGGAGTGGCCCCAGTAAGGCAGCCAAGAAACCTACCCAAAGCCTGTAGCCTCCGCAA-CTACTCCGGCCTGT--CCTGCTCACTCT-TTCCTTCCCAGGGGTCTGTTCCTTCTTGTGCTCACCCAGAGAAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831717 114 + 1920343 TGGAGTGGCCCCAGTAAGGCAG-------------CCAAAGCCTGCAGCCTCCCCAA-CTACTCCAGCCCAT--CCTGCTCACTCT-TTCCTTCCCGGGGGTCTGTTCCTTCTTGTGCTCACCCAGAGAAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943501 127 - 7032639 TGGAGTGGCCCCAGTAAGGCAGCCAAGAAACCTACCCAAAGCCTGCAGCCTCCCCAG-CTACTCCAGCCCGT--CCTGCTCACTCT-TTCCTTCCCGGGGGTCTGTTCCTTCTTGTGCTCACCCAGAGAAC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2951943 102 + 8555354 TGGAGCGGCCCCAGTAAGGCAGCCAAGAAACTCACCTGAAGCCTGCAGCCTC-----------------------------ACCCTGTTACTTCACGGGAGTCTGTTCCTTCCTCTGCCTGCCTGGAGATT i proCoq1.NW_012135969v1 I 35 C 0 s otoGar3.GL873537 22750183 100 + 28711273 TGAAGCGGCCCCTCTAAGGCAGTGAAGAAACACACCTGAAGCCTCCAGCCTC-----------------------------ACCC--TTGCCTTCCCAGAGTCTGTTCCTTCCTTGGCCTGTCCAGAGATT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035743 108 - 122082543 CAGAGCATCTCTGGGATGACAGT-----------CCCAGAATCTGTGTCTTCAGCCA-CTGC-----ACCCT--CCTCCAGGCCAT-TCTCTGCCT--GCCTCCTATTCTTCATTGGACTGCTCAGAGGA- i mm10.chr11 C 0 C 0 s canFam3.chr9 21368567 111 + 61074082 TGAAGCTGCCCTGGTAAGGCAGCCATGAAACTCACCCAACG------------------TACTGCAGACGGTTCCTTGCCCACCCG-TTCCTTCAGTGGGATCTATTCCTTCTT-CACTTGCCCAGAGAAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349108 117 - 852752 TACAGTGGCCCCAGGAAGGCAGTCAAGA---TCACC----------AGCCACCCCAGCCTACTCCAGATCATCCCCTGACCACTGT-TTCCTTCAGCGGGGTCTGTCTCTTCCTCTGCTTGCTCAGACAAT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35867533 139 - 65901067 I a score=5835080.000000 s hg38.chr17_GL383564v2_alt 39176 402 + 133151 TCTCTGATGTGCCAGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTACGCTAT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATACCAGAGCAGTTTCATGCCT--------CAGGGGAAGATGGTGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCAGTGGGAAGGAGGGTGGAGGTGCTGA-GTGCTGCAGTCCCTATCTCCCCTTAGCTATTCTT-GGA-----------TTT-----------CCCTTCTAACTTGGACATCTCCCAGAGCTGCTTGTATCCTATTCTGAATGGAGGAGGC----ATGAGCTGCGGGCTGGA--AAGAAGCTCTGGAAAACT s panTro5.chr17 16233066 402 + 83181570 TCTCTGATGTGCCAGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTACGCTAT-AAAAAGCCACTTGAAAGACAGGCCATATAATGCCCTGACTCTTGGATACCAGAGCAGTTTCATGCCT--------CAGGGGCAGATGGTGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCAGTGGGAAGGAGGGTGGAGGTGCTGA-GTGCTGCAGTCCCTATCTCCCCTTAGCTATTCTT-GGA-----------TTT-----------CCCTTCTAACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGCGGGCTGGA--AAGAAGCTCTGGAAAACT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140547 402 + 83442489 TCTCTGATGTGCCAGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTACGCTAT-AAAAAGCCACTTGAAAGACAGGCCATATAATGCCCTGACTCTTGGATACCAGAGCAGTTTCATGCCT--------CAGGGGCAGATGGTGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCAGTGGGAAGGAGGGTGGAGGTGCTGA-GTGCTGCAGTCCCTATCTCCCCTTAGCTATTCTT-GGA-----------TTT-----------CCCTTCTAACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGAAGGAGGC----ATGAGCTGCGGGCTGGA--AAGAAGCTCTGGAAAACT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975547 403 + 4267968 TCTCTGATGTGCCAGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTACACTAT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATACCAGAGCAGTTTCATGCCT--------CAGGGGCAGATGGTGAATCTGGTGCCCCGGACCTGGGAGCGAG---------------------------------------------------------GCAGGCAGGCCAGTGGGAAGGAGGGTGGAGGTGCTGA-GAGCTGCAGTCCCTATCTCCCCTAAGCTATTCTTGGGA-----------TTT-----------CCCTTCTAACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGCGGGCTGGA--AAGAAGATCTAGAAAACT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1955700 402 - 2193130 TCTCTGATGTGCCAGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGAAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTACGCTAT-AAAAAGCCACTTGAAAGACAGGCCGTATAATGGCCTGACTCTTGGATACCACAGCAGTTTCATGCCT--------CGGGGGCAGATGGTGAATCTGGTGCCTTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGTGTGGAGGTGCTTA-GTGCGGCAGTCCCTATCTTCTCTTAGCTATTCTT-GGA-----------TTT-----------CCCTTTCAACTCGGACATCTCCCAGAGCTGCTGGTATCCAAATCTGAATGGAGGAGGC----AGGAGCTGCGGGCTGGA--AAGAAGCTCTGAAAAACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028260 403 - 77216781 TCTCTGATGTCCCCGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTAAGCTGT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATCCCAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GTGCTGCAGTCCCTATCTCCCCCTGGTCGTTCTT-GGA----------TTTT-----------TCCTTCTGACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27940857 403 - 80997621 TCTCTGATGTCCCCGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTAAGCTGT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATCCCAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GTGCTGCAGTCCCTATCTCCCCCTGGTCGTTCTT-GGA----------TTTT-----------TCCTTCTGACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997126 404 + 10377808 TCTCTGATGTCCCCGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTAAGCTGT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATCCCAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GTGCTGCAGTCCCTATCTCCCCCTGGTCGTTCTT-GGAT---------TTTT-----------TCCTTCTGACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884556 403 - 8458610 TCTCTGATGTCCCCGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTAAGCTAT-AAAAAGCCACTTGAAAGACAGGCCATGTAATGGCCTGACTCTTGGGTCCCAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCTTGGACCCAGGAGTGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GTGCTGCAGTCCCTATCTCCCCTTGGTCGTTCTT-GGA----------TTTT-----------TCCTTCTGACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64840286 403 + 75148670 TCTCTGATGTGCCAGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAATGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAATGTGCTCATCACCTGAGTAAGCTAT-AAAAAGCCACTTGAAAGACAGGCCCTATAATGGCCTGACTCTTGGATCCCAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GTGCTGCAGTCCCTATCTCCCCCTGGTCGTTCTT-GGA----------TTTT-----------TCCTTCTGACCTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2063743 403 + 4244037 TCTCTGATGTCCCCGT----GGCCCTCCCTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTAAGCTAT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATCCGAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCCTGGACCCAGGAGTGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GTGCTGCAGTCCCTATCTCCCCTTGGTTGTTCTT-GGA----------TTTT-----------TCCTTCTGACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2091626 402 + 4569836 TCTCTGATGTGCCAGT----GGCCCTCCTTTTTAACCTCCTAATAAATATCATTTCCTTGGCAAAGCAGATGCC-TTTTTCATTTGTATTCATTTGTTTCAACGTGCTCATCACCTGAGTAAGCTAT-AAAAAGCCACTTGAAAGACAGGCCATATAATGGCCTGACTCTTGGATACCAGAGCAGTTTCATGCCT--------CGGGGGCAGATGGCGAATCTGGTGCCCTGGACCCAGGAGCGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGGGCTGA-GGGCTGCAGGCCCTAACTCCCCTTGGTTGTTCTT-GGA-----------TTT-----------TCCTTCTGACTTGGACATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAAGAGGC----ATGAGCTGTGGGCTGGA--AAGAAGCTCTGGAAAACT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060525 379 - 159171411 T-------------------------CCCTTGTAACCTCCTAATAAATGTTATTTCTTTGGCAAAACAGATGCCTTTTCTCATTTGTATTCATTTGTTTCAATGTGCTCATCACCTGATTATGCTAT-AAAAAGCCACTTGAAAGACAGACCATATAATGGCCTGACTCTTGGCTACAAGAGCAGTTTCATGCCTTGCGGGGGCAGTGTCAGATGTCTAACATGGCACCCTGGACCCAGGAGTGAG---------------------------------------------------------GCAGGCGGGCCTGTGGGAAGGAGGATGGAGGTGCTGAAGTGCTGCA------------CCTTGGCCTTTTTT-AGA-----------TTT-----------TCCTTCTGATCTGGGCATCTCCCAGAGCTCCTTGTATCCAAATCTGAATAGAGGAGGC----ATGAGGGGGAGGCTGGA--AAGAAGCTCTGGAAAACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1782927 378 + 3513951 T-------------------------CCCTTGTAACCTTCTAATAAATGTTATTTCTTTGGCAAAACAGATGCC-TTTCTCATTTGTATTCATTTGTTTCAATGTGCTCATCACCTGAGTATGCTAT-AAAAAGCCACTTGAAAGACAGACCATATAATGGCCCGACTCTTGGCTACAAGAGCAGTTTCATGCCTTGCGGGGGCAGTGGCAGACAGCTAACCTGGCACCCTGGACCCAGGAGTGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGAGGAGGTGCTGATGTGCTGCA------------CCTTGGCCTTTTTT-AGA-----------TTT-----------TCCTTCTGACCTGGGCGTCTCCCAGAGCTGTTTGTATCCAAATCTGAATGGAGAAGGC----ATGAGCTGGGGGCTGGA--AAGAAGCTCTGGAAAACT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1831831 376 + 1920343 T---------------------------CTTGTAACCTCCTAATAAATGTTATTTCTTTGGCAAAACAGACGCC-TTTCTCATTTGTATTCATTTGCTTCAATGTGCTCATCATCTGAGTATGCTAT-AAAAAGCCACTTGAAAGACAGACCATATAATGGCCTGACTCTTGGCTACAAGAGCAGTTTCATGTCCTGCGGGGGCAGTGGCAGACGGCTAACCTGGCACCCTGGACCCAGGAGTGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGGTGCTGAAGTGCTGCA------------CCTTGGCCTTTTTT-AGA-----------TTT-----------TCCTTCTGACCTGGGCGTCTCCCAGAGCTGCTTATATCCAAATCTGAATGGAGAAGGC----ATGAGCTGGGGGCTGGA--AAGAAGCCCTGGAAAACT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6943628 378 - 7032639 T-------------------------CCCTTGTAACCTCCTAATAAATGTTATTTCTTTGGCAAAACAGATGCC-TTTCTCATTTGTATTCATTTGTTTCAATGTGCTCATCACCTGAGTATGCTAT-AAAAAGCCACTTGAAAGACAGACCATATAATGGCCCGACTCTTGACTACAAGAGCAGTTTCATGCCTTGCGGGGGCAGTGGCAGATGGCTAACCTGGCACCCTGGACCCAGGAGTGAG---------------------------------------------------------GCAGGCAGGCCTGTGGGAAGGAGGGTGGAGATGCTGAAGTGTTGCA------------CCTTGGCCTTTTTT-AGA-----------TTT-----------TCCTTCTGACCTGGGCATCTCCCAGAGCTGCTTGTATCCAAATCTGAATGGAGGCGGC----ATGAGCTGGGGGCTGGA--AAGAAGCTCTGGAAAACT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35867672 406 - 65901067 TCTCTGATGTGCCAGC----GGCCCTCCCTGG-AACCTCCTAATAAATGTGATTGCCCTGGCAAAGCAGGCGCT-TTTCTCATTGGTATTCATTTGTTTCAAGGTGCTCATCACTCGGGTACTCTAT-AAAAAGCCACTTGAAAGACAGACCATATAATGGTGTGACTCTTGGATACAGGAGCCGTTCCATGCCT--------ggcgggcagacggcgggcctggcgccccggccccgcgggtgag---------------------------------------------------------gcaggcaggccggcgggAAGCAGGGTGGCGTCTCTGCAGGGCTGCAGTCCCTATCTCCCCTTGGCCAGTCCT-GCA-----------GTT-----------TTCCCTTGACTTGGACATCTTCCAGAGCTGCTTGTACCCAAATCGGAACGCAGGAGGCCTGAGTGAGCCGGGGGCTGGC--GAGAGGCTCTGGAAAACA i micMur3.chr16 I 139 C 0 s proCoq1.NW_012135969v1 2952045 409 + 8555354 TCTCTGATGTGCCAGC----GGCCCTCCCTGGTAACCTCCTAATAAACGTGATTTCCCTGGCAAAGCAGACGCT-TTTCTCATTGGTATTCATTTGTTTCAAGGTGCTCATCACTTGGGTACTCTAT-AAAAAGCCACTTGAAAGACAGACCATATAATGGTCTGACTCTTGGATACAGGAGCTGTTCCATGCCT--------GGCGGGCAGACGGCTGGCCTGGCGCCCTGGCCCCGAGGCTGag---------------------------------------------------------gcaggcaggccggcaggaagCGGAGTGTTGTCACTGCAGAGCTGTGGTCCCTATCTCCCCTTGGCCAGTCCT-GCA-----------TTT-----------TTCCCTTGACCTGGACATCTTCCAGAGCTGCTGGTATCCAAACCTGAACGTGGGAGGCCTGAGTGAGCTGGGGGCTGGCCAGAGAGGCTCTGGAAAACG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22750283 406 + 28711273 TCTCTGCCATGCCAGCCAATGGCCCTCCCTTTTAACCTCCTAATAAACATCATTTCCCTGGCAAAGTAGACGCT-GCTCTCATTCATATTCATTTGTTTCAATGTGCTCATCACTCTCATACTCTAT-AAAAAGCCACTTGAAAGATGGG-CATA-AATGGTCTGACTCTTGGGTATAAGAACCATTTCATGCCT-----------GAGCAGATGGCTGGCTTGGTGCCCTGGACCCACAGGTGAG---------------------------------------------------------GCTGCCACGCTAGCAAGAAGGAGGGTGGGATGGTTGCAAAGCTGCTGTCCCTGTCTCCTCTTGGACATTCTG-GAA-----------TTT-----------CTCCCTTGATCTGAATGTCTTCCAGAGCTGCTTGTGTCCCAATGTGAATGGAGGAGACACAAGTGAGTTGGGGGCTGGA--AGGAAGCTCTGGAAAACA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22035851 359 - 122082543 -CTCTGAAGTGCCAGT----GGCCCTCCCTTGTAATCTCCCAATAAACATT-TTTCCCTGCAAAAGCAGATGCC-TTTCTCACTGGTATTTATTTCTTGCTGACGACTCACCACTTGAGGACTCTAT-AAAAAGCCACTTGAAAGTCAGGCTTTATGACGGCTTGACTCTA--------------------------------GATGGGCAGATGCCTAGCCCAACACCCTGGACCCATGGGTGAC---------------------------------------------------------ACAGAGCAGCTGTCAGGAAGGAGGGCGATGCTGCTGCCGTGC----------------CTTTCATCATCTCT-GTA-----------TTT-----------CTCTCATGACACGG-CTTCTCCCAGAGCTGTTGATATCCAAGTCTG-ATTTAGAAAGC----ATGAGTTAGGGACTGCC--AAGTGGCTCTGGAAAAGT i mm10.chr11 C 0 I 46 s canFam3.chr9 21368678 407 + 61074082 TCTCGGAAGTGCCAG-----GGCGTTCCCTTGTAACCTGCTAATAAACTTGATTTCCCTGGCAAAGCAGATGCC-TTTCTCATTGGTATTCATTCATTCTGCCGCACCCATCACCTGAGCACTCTATAAAAAAGCCACTTGAAAATCAGGCTACATAATGGCCTGACTCTTGGGTACAAGAGCCGTTCTATGCCT--------GGCGGGCAGATGGCTGGCCTGGTGCCCTGGACGCATGGGTGAG---------------------------------------------------------GCAAGCTGGC----AGGACGGAGGGCTGGGCAGCCGCAATGCTGCAGCCTCCATCTCCCCTTGACCATTCCT-GCATATTTCCCACTCTC-----------CCTCTTTGACCTGGACATCT---AGAGCTGATTGCATCTAAATCTGAAGTGAGGAGGC----ATGACCTACGGGCTAGA--AAGAGGCTCTGGAAAATT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349225 460 - 852752 TCTCTGTAGTACCACT----GGCCCTCCCTTGTAAACGCCTAATAAACTTGATTTCCCTGGCAAAGCTGAAATC-TTTGTCATTGATATTCATTTGTTTCAACACACTTATCACTTGACTACTCTAT-AAAAAAACCCCTTAAAATCAGGCCGTATAGTGACCTGACTCTTAGCTGCAAGAGCCATTCTGTGCCT--------GGCAGGCAGATGGCTGGTGCTGCACCCTAGACCTGTAGCTGAGGCTGACCAGCTCTTGCCTACTTGTCAGAAAGCTAAACCCCTTGGCCAAGACCCCCCAGCAGGCAGAACATCAGGAGATAGGGCA-----------GTGCAGTGGCTGCTGCCACCCCTTGACCACTCCT-GCA-----------TTTTTCTCACACTGTTCTCTTGACCTTGACATCTCCCAGAGCAGCTTGTATCCAAATATGAACCCAGGAGGT----ATGAGCTGGGGGCTGGA--ATAAGGCTCTGGAAAACT i dasNov3.JH570468 C 0 C 0 a score=85629.000000 s hg38.chr17_GL383564v2_alt 39578 7 + 133151 CATGTTC s panTro5.chr17 16233468 7 + 83181570 CATGTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140949 7 + 83442489 CATGTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975950 7 + 4267968 CATGTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956102 7 - 2193130 CATGTTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028663 7 - 77216781 CATCTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941260 7 - 80997621 CATCTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997530 7 + 10377808 CATCTTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884959 7 - 8458610 CATCTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64840689 7 + 75148670 CATCTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064146 7 + 4244037 CATCTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092028 6 + 4569836 CATC-TC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060904 7 - 159171411 CATCTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1783305 7 + 3513951 CATCTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1832207 7 + 1920343 CATCTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6944006 7 - 7032639 CATCTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35868078 7 - 65901067 CATCTTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2952454 7 + 8555354 CATCTTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22750689 7 + 28711273 CATCTTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21369085 7 + 61074082 CATATTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349685 7 - 852752 CACCGCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036210 46 - 122082543 I a score=4508340.000000 s hg38.chr17_GL383564v2_alt 39585 319 + 133151 TTTCAGCAGGAGTTTCAGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGCATTT-----------------CCCAG----------CGAAGAAACCCTCTGACCTGCCCTGCTATACCCAGGAATTCCTCCTTTCC-CTTGTGTGGGTC-GATCATTATCAGCCTGGGCTTCCAGCTTCTGTCC-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCGTCAACTCTTTATTTGATCCTTTGGCCTTTCTCAattcaatccaaccagtacctgttgaatacctactctgtgcagacgctgggtggtgggatgggtagagacacatgaagaaacacacagttcc s panTro5.chr17 16233475 319 + 83181570 TTTCAGCAGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGCATTT-----------------CCCAG----------CAAAGAAACCCTCTGACCTGCCCTGCTATGCCCAGGAATTCCTCCTTTCC-CTTGTGTGGGTC-GATCATTATCAGCCTGGGCTTCCAGCTTCTGTCC-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCGTCAACTCTTTATTTGATCCTTTGGCCTTTCTCAATTCAATCCAACCAGTACCTGTTGAATACCTACTCTGTGCAGACGCTGGGTGGTGGGATGGGGAGAGACACATGAAGAAACACACAGTTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16140956 319 + 83442489 TTTCAGCAGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGCATTT-----------------CCCAG----------CAAAGAAACCCTCTGACCTGCCCTGCTATGCCCAGGAATTCCTCCTTTCC-CTTGTGTGGGTC-GATCATTATCAGCCTGGGCTTCCAGCTTCTGTCC-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCGTCAACTCTTTATTTgatcctttggcctttctcaattcaatccaaccagtacctgttgaatacctactctgtgcagacgctgggtggtgggatggggagagacacatgaagaaacacacagttcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3975957 319 + 4267968 TTTCAGCAGGAGTTTCGGGTTCAGTGCTGTGTTATTCTG-GGTTATTGGTGGTCCAGGCATTT-----------------CCCAG----------CGAAGAAACCCTCTGACCTGCCCTGCTATGCCCAGGAATTCCTCCTTTCC-CTTGTGTGGGTA-GATCATTATCAGCCTGGGCTTCCAGCTTCTGTCC-TCCCTCCTCGACTCCAAGTCTTAGAGAC--------CCCGTCAACTCTTTATTTgatcctttggcctttctcaattcaatccaaccagtacctgttgaatacctactctgtgcagacgctgggtggtgggatggggagagacacatgaagaaacacacagttcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956109 319 - 2193130 TTTCAGCAGGAGTTTTGGGTTCAGGGCTGTATTATTCTG-GGTTATTGGTGATCCAGGCATTT-----------------CCCAG----------CAAAGAGACCCTCTGACCTGCCCTGCTATACCCAGGAATTCCTCCTTTCC-CTTGTGTGGGTC-GATCATTATCAGCCTGGGCTTCCAGCTTCTCTCT-TCTCTCCTTGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCTCAattcaatccaaccagtacctgttgaaaacctactctgtgcagacgctgggtggtgggatggggagagacatatgaagaaagatacagttcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028670 319 - 77216781 TTCCAGTGGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTCCTGTGCCCAAGAATTCCTCCTTTCC-CTTGTGTGGGTC-AATCATTATCAGCCTGGGCTTCCAGCTCCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCtcaattcagtccaaccagtacctgttgaatagctactctgtgcagacgctgggtggtggattggggagagacacatgaagaaagacgcagttcc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941267 319 - 80997621 TTCCAGTGGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTCCTGTGCCCAAGAATTCCTCCTTTCC-CTTGTGTGGGTC-AATCATTATCAGCCTGGGCTTCCAGCTCCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCTCAATTCAATCCAACCAGTACCTGTTGAATAGCTACTCTGTGCAGACGCTGGGTGGTGGATTGGGGAGAGACACATGAAGAAAGACGCAGTTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997537 319 + 10377808 TTCCAGTGGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTCCTGTGCCCAAGAATTCCTCCTTTCC-CTTGTGTGGGTC-AATCATTATCAGCCTGGGCTTCCAGGTCCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCtcaattcaatccaaccagtacctgttgaatagctactctgtgcagacgctgggtggtggattggggagagacacatgaagaaagacgcagttcc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1884966 319 - 8458610 TTCCAGTGGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTCCTGTGCCCAAGAATTCCTCCTTTCC-CTTGTGTGGGTC-AATCATTATCAGCCTGGGCTTCCAGCTCCTCTCT-TCCCTCCTCTACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCtcaattcaatccaaccagtacctgttgaatagctactctgtgcagacgctgggtggtggattggggagagacacatgaagaaagacgcagttcc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64840696 319 + 75148670 TTCCAGTGGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTGCTATGCCCAAGAATTCCTCCTTTCC-TTTGTGTGGGTC-GATCATTATCAGCCTGGGCTTCCAGCTCCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCTCAATTCAATCCAACCAGTACCTGTTGAATAGCTACTCTGTGCAGACGCTGGATGGTGGATTGGGGAGAGACACATAAAGAAAGACGCAGTTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064153 319 + 4244037 TTCCAGTGGGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTCCTGTGCCCAAGAATTCCTCCTTTCC-CTTGTGTGGGTC-AATCATTATCAGCCTGGGCTTCCAGCTCCTCTCT-TCCCTCCTCTACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCtcaattcaatccaaccagtacctgttgaatagctactctgtgcagacgctgggtggtggattggggagagacacatgaagaaagacgcagttcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092034 319 + 4569836 TATCAGTGAGAGTTTCGGGTTCAGTGCTGTATTATTCTG-GGTTATTGGTGGTCCAGGAATTT-----------------CCCAG----------TGAAGAGACCCTCTGACCTGCCCTGCTATGCCCAAGAATTCCTCCTTTCC-CTTGTGTGGGTC-AATCATTGTCAGCCTGGGCTTCCAGCTCCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTgatcctttggcctttctcaattcaatccaaccagtgcccgttgaatatctactctgtgcagacgctgggtggtggactggggagagacacatgaagaaagacacagttcc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46060911 317 - 159171411 TTTCAGCAGAACTTTCTGGTTCAGTGCTATATTATTCTG-CATTGTTGGGGGCTCAGGCATTT-----------------CCCAG----------CCAAGAGACTCTCTGCCCTGCCCTGCTATGCCCAGGAATTCCTTCTTTCC-CTTGTGTGGTTC-GATCATTGTCAGCCTGGGCTTCCAGCTGCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCTCAATTCAATCCACCCAGTGCCTATTGAATACTTACTCTGTGCAGATGGTGGGTGGTGGGATGGGGAGAGAC--ATGAAGAAAGACACAGATCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1783312 302 + 3513951 TTTAAGCAGAACTTTAGGGTTCAGTGCTATACTATTCTG-GGTTGTTGGTGGCTCAGGCATTT-----------------CCCAG----------CCAAGAGACTCTC---------------TGCCCAGGAATTCCTCCACTTC-CTCGTGTGGTTG-GATCATTGTCAGCCTGGGCTTCCAGCTGCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCACCAACTCTTCATTTGATCCTTTGGCCTTTCTCAATTCAATCCAACCAGTGCCTATTGAATACTTACTTTGTGCAGATGTTGGATGGTGGGACGGGGAGAGAC--ACGAAGAAAGACATAGTTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1832214 317 + 1920343 TTTCAGCAGAACTTTTGGGTTTCGTGCTGTATTATTCTG-GGTTGTTGGTGGCTCAGACATTT-----------------CCCAG----------CCAAGAGACTCTCTGCCCTGCCCTGCTATGCCCAGGAATTCCCCCTTTCC-CTCGTGTGGGTC-GATCATCGTCAGCCTGGTCTTGCGGCTGCTCTCT-TCCCTCCTCGACTCCAGTCCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGACTTTCTCAGTtcaatccaaccagtgcctattgaatacttactctctgcagatggtgggtggtgggatggggagagac--atgaagaaagacacagttcc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6944013 318 - 7032639 TTTCAGCAGAACTTTTGGGTTCAGTGCTATATTATTCGGTGGTTGTTGGTGGCTCAGGCATTT-----------------CCCAG----------CCAAGAGACTCTCTTCCCTGCCCTACTATGCCCAGGAATTCCTCCTTTCC-CTTGTGTGGTTC-GATCATTGTCAGCCTGGGCTTCCAGCTGCTCTCT-TCCCTCCTCGACTCCAGGTCTTAGAGAC--------CCCATCAACTCTTTATTTGATCCTTTGGCCTTTCTCAGTtcaatccaaccagtgcctattgaatacttactctgtgcagatggtggctggtgggatggggagagac--atgaagaaagacacagttcc i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35868085 315 - 65901067 TTCCAGAAGGAGCTTTGGGTCCAGTGCCGTATCATTCCG-GGCTATTGTTGGTCCAGGCA-GT-----------------CCCAG----------CGAACGGGCCCTCTGGCTTGCCCTGCCATGCCCAGGACTTCCTCCCTGCC-TGTGTGCTGG----ATCATTACCAGCCTGGGCTACCCGGCGCTCTCTGCCCCTTCCCAACTCTGGGTCTTAGAGAC--------CCCATCAACTCTTCCTTTGAAACCTTGGTCTTTCTCAGTTCAGTCCTGCCagtacctgttga-tacctattccgtgccggcactgggtggtggggtggggagagacacgtgaagaaagacacagttcc i micMur3.chr16 C 0 I 251 s proCoq1.NW_012135969v1 2952461 315 + 8555354 TTCCAGCAGGAGTTTTGGGTGCAGTGCCGAATCATTCTG-GCTTACTGTTGGTCCAGGCA-GT-----------------CTCAG----------CGAAGGGACCCTCTGGCTCGCCCTGCCACGCCCAGGACTTCCTCTCTGCCTTGTGTGGTGG----ATCGTTACCAGCCTGGGCTACCCGGAGCTCTCTGCCCCTTCCCAACCCTGGGTCTTAGAGAC--------CCCATCGACTCTTCCTGTGAAACTTTGGCCTTTCTCAGttcagtccggccagtacctgttga-cacttactttgtgccggcactgggtggtggggt-gggagagacacatgaagaaagacacagttcc i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22750696 313 + 28711273 ATCCAATAGGAGTTCTGGGTCCAGGGCTCTATCATTCCG-GGTTATTGTTGGTCTAGATG-GT-----------------CCCAG----------CAAAGGGAGCTTCTGGCTTGCCTTGCCATGCCTAGAACTTCCTCCTTTCC-CTTGTGTGGG----TTGATCATCAGCCTGGGCTACTGTATTCTTTCTGCCCCTTCTCGAATGTGGGTCTTAGAGAT--------CACATCAACTCTTCCTTTAAAATGTTAGCCTTTCTCTGTTCAatccattcaatacctgttgagtacctactttgtgcagaacctgggaggtgttgt---gggagacacataaagaaagatgtggttcc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22036256 285 - 122082543 TCTCAGTAGGATCCTTGGATCTAGTGCTCTATGATTCTG-GGTTATTG-TGGTTCAGATA-AC-----------------CTCAGGTGTACTGTATGAAGGAAACCT-TGTCTTTCCCTGCCATACCCAGGATGCTTTTTTCTCC-TTCATGTATATT--TTGATTATTAGCCTTGGCTTCCAGCTCCTGACC----------------------GAGAATA--------TCCACCAACTCTTCATGGG-----------CTTCTCATAGCAATCTAACCAATTCCTAATGAATTCCCACTCTGT--CGATGCTGGGTGGTACAGCAGGGAGAGATAGTTCCAG------GCAACTCC i mm10.chr11 I 46 C 0 s canFam3.chr9 21369092 338 + 61074082 TCTTAGCAGGAGTTTCAGGTCCAGTGCTGTATTA-TCTG-GGTC-CTGGTGGCCCGGGTGTTCCAGCAGCCTCAGAAACACTCAG----------CAAAGGAATGCTCTGGCCTGCC-TGCCATGCCTAGGACTTCCTCCTTCCT-CATGTGTTGGTG-GATCGTTATCACCCTGGGCTT-CATCTGCTCCCT-TCCCCTCTCAACTTGGTGGCTTA-AGACACCTTTCACCCCCCAACTCTTCATCTGATACTTCCACCTCTCTCAGTCCATTCCAACCAGTACCTGTTGAATCCCTACTCTGTTTACACCCTGGATAGTGAGGAAGGGAGAGACACATCAAGAAAGACATAGTCT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349692 294 - 852752 CTTCAGTGGAAGTTTTGGGTTCAGCATTGTATTATTCTG-GCTTGTTGGTTGTCCAGGCA-GC-----------------CTCAGGAACTC----CAAGAAAACCCTTTGACTTGCC-------------------CTCCGTGCC-CCTGTGCAGGTGGGATCATCATCATCCTGGGTTT--AGCTATTTTCT-TCCTTCTCCGGCTCTG----TTAGACAC-------AGTTATCAGCTCTTCATTTGCTGCTTAGATCTTTCCCAATTAAATTCATCCACTAGCTGTTGAATACCTTCTCTCTGCAGACATTAGAAGGCAGGGCGGGG-GTGACATAT------AGACACTGTCTC i dasNov3.JH570468 C 0 C 0 a score=929853.000000 s hg38.chr17_GL383564v2_alt 39904 69 + 133151 tgACTGCAACTTACTGATAATTTGTTAA-------AAAACTAGTCC-CCAAGTAGTGCTCTTA---TAAGGCCCAGTCCC s panTro5.chr17 16233794 69 + 83181570 TGACTGCAACTTACTGACAATTTGTTAA-------AAAACTAGTCC-CCAAGTAGTGCTGTTA---TAAGGCCCAGTCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141275 69 + 83442489 tgactgcaacttactgacaatttgttaa-------aaaACTAGTCC-CCAAGTAGTGCTGTTA---TAAGGCCCAGTCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976276 69 + 4267968 tgactgcaacttactgacaatttgttaa-------aaaACTAGTCC-CCAAGTAGTGCTGTTA---TAAGGCCCAGTCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956428 76 - 2193130 tgaccgcaacttattgacaatttgttaaaagggataaaACTAGTCT-CCAAGTAGTGCTATTA---TAAGGCCCAGTCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30028989 76 - 77216781 tgaccgcaacttatttataattttttaaaagggataaaactaGTCC-CCGAGTGGTGCTATTG---TAAGGCCCAGTTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941586 76 - 80997621 TGACCGCAACTTATTTATAATTTTTTAAAAGGGATAAAACTAGTCC-CCGAGTGGTGCTATTG---TAAGGCCCAGTTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997856 76 + 10377808 tgaccgcaacttatttataattttttaaaagggataaaactaGTCC-CCGAGTGGTGCTATTG---TAAGGCCCAGTTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885285 76 - 8458610 tgaccgcaacttatttataattttttaaaagggataaaactaGTCC-CCGAGTAGTGCTATTG---TAAGGCCCAGTTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841015 76 + 75148670 TGACCACAACTTATTTATAATTTTTTAAAAGGGATAAAACTAGTCC-CCGAGTAGTGCTATTG---TAAGGCCCAGTTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064472 76 + 4244037 tgaccgcaacttatttataattttttaaaagggataaaactaGTCC-CCGAGTAGTGCTATTG---TAAGGCCCAGTTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092353 76 + 4569836 tgaccacaacttatttataattttttaaaagggataaaacTAGTCC-CCGAGTAGTGCTATTG---TAAGGCCCAGTTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46061228 76 - 159171411 TGACCACCACTCATTTACAATTTGTTAAAAGGGATAAAACTGGTCC-TCAAGTAGTGCTGTTA---TAAGGCCCAGTACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1783614 73 + 3513951 TG---ACCACTTATTTACAATTTGTTAAAAGGGATAAAACTAGCCC-TCAAGTAGTGCTGTTA---TAAGGCCCAGTTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1832531 76 + 1920343 tgaccaccacttatttacaatttgttaaaagggataaaactaGTCC-TCAAGTAGTGCTGTCA---TAAAGCCCAGTCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6944331 76 - 7032639 tgacaaccacttatttacaatttgttaaaagggataaaactGGTCC-TCAAGTAGTGCTGTTA---TAAGGCCCAGTCCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2952776 76 + 8555354 cgcctgcaacgtattcaccatttgttacaagggatgaaaccagtCC-CCAAGTGGTACCACTG---TAAGTCCCAGTCCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22751009 76 + 28711273 tggttgcaagttattcacaatttgttcaaggggataaaACTAGTCT-CCAAATAGCACCACTG---TAAGTCCTAGGCCC i otoGar3.GL873537 C 0 I 387 s mm10.chr11 22036541 80 - 122082543 CAATCACAAATCACTCACAATGTTTTAAAAGACATAAAGTTGGACCGGCAAGAAGTACTACTACCCTAAGATCCAGAACC i mm10.chr11 C 0 C 0 s canFam3.chr9 21369430 74 + 61074082 TGGCTGCAAGTTATTTATAACTTACTTAAGGGGATAAAGCTAGTCC-CTAAATAGTGGTATTA---GAAGGCAT-GTCC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 349986 75 - 852752 TGGCTGCAGGTTCTTTACAGTTTGTTAAGGGGGATAAAA-TAGTCC-TCAAATAGGGCCACTT---CATGGCACAGTCTT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35868400 251 - 65901067 I a score=219379.000000 s hg38.chr17_GL383564v2_alt 39973 18 + 133151 -----CTGGCACTGTGAACAGCT s panTro5.chr17 16233863 18 + 83181570 -----CTGGCACTGTGAACAGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141344 18 + 83442489 -----CTGGCACTGTGAACAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976345 18 + 4267968 -----CTGGCACTGTGAACAGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956504 18 - 2193130 -----CTGGCACTGTGAACAGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029065 18 - 77216781 -----CTGGCACTGTGAACAGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941662 18 - 80997621 -----CTGGCACTGTGAACAGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997932 18 + 10377808 -----CTGGCACTGTGAACAGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885361 18 - 8458610 -----CTGGCACTGTGAACAGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841091 18 + 75148670 -----CTGGCGCTGTGAACAGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064548 18 + 4244037 -----CTGGCACTGTGAACAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092429 18 + 4569836 -----CTGGCACTGTGAACAGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46061304 18 - 159171411 -----CTGGCACTGTGAACAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1783687 18 + 3513951 -----CTGGCACTGTGAACAGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1832607 18 + 1920343 -----CTGGCACTGTGAAGAGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6944407 18 - 7032639 -----CTGGCACTGTGAACAGCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2952852 18 + 8555354 -----CTGGCACTGTAAACAGCT i proCoq1.NW_012135969v1 C 0 I 7481 s otoGar3.GL873537 22751472 18 + 28711273 -----CCAGCACTGTGATCACAT i otoGar3.GL873537 I 387 C 0 s mm10.chr11 22036621 17 - 122082543 -----TCAGCTCCTAAATAAAC- i mm10.chr11 C 0 C 0 s canFam3.chr9 21369504 16 + 61074082 -----CTGACACTG--AACACTC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 350061 17 - 852752 GTGGAATGCAGCAGTAA------ i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35868400 251 - 65901067 I a score=490927.000000 s hg38.chr17_GL383564v2_alt 39991 45 + 133151 GGTGGGTGCTAGAAG--GAA--CTCTGAGTACCGAAAGGGACAA-TG---CTG s panTro5.chr17 16233881 45 + 83181570 GGTGGGTGCTAGAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141362 45 + 83442489 GGTGGGTGCTAGAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976363 45 + 4267968 GGTGGGTGCTAGAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956522 45 - 2193130 GGTGGGTGCTAGAAG--GAA--CTCTAAGTACCAAAAGGGACAA-TG---CTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029083 45 - 77216781 GGTGGGTGCTACAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941680 45 - 80997621 GGTGGGTGCTACAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997950 45 + 10377808 GGTGGGTGCTACAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885379 45 - 8458610 GGTGGGTGCTACAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841109 45 + 75148670 GGTGGGTGCTGCAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064566 45 + 4244037 GGTGGGTGCTACAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092447 45 + 4569836 GGTGGGTGCTACAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46061322 45 - 159171411 GGTGGATGCTAGAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1783705 45 + 3513951 GGTGGAGGCTAGAAG--GAA--CTCTGAGTACTGAAAGGGACAA-TG---CTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1832625 44 + 1920343 GGC-GCTGCTAGAAG--GAA--CTCTGAGTACTGAAAAGGACAA-TG---CTG i cebCap1.NW_016107730v1 C 0 I 1321 s aotNan1.NW_018502359v1 6944425 45 - 7032639 GGTGGATGCTAGAAG--GAA--CCCTGAGTACTGAAAGAGACAA-TG---CTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22751490 27 + 28711273 -------------AG---------CTGGGTGCTAGAAGTGACAG-CC---TTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22036638 50 - 122082543 AGTTGGTGCTGGAAA--CAAATATCCGACTATTGAAAGAAACAA-CGAGCTTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21369521 34 + 61074082 GGCTTGTGCTGCAAACAGAT--CACCAAATACTGAA----------------- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 350078 48 - 852752 GGCTGGTGCTGGAAG--CAAGCCTCTGAGCAGTGAAACGAACAAGTG---CTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35868400 251 - 65901067 I a score=15300.000000 s hg38.chr17_GL383564v2_alt 40036 1 + 133151 G s panTro5.chr17 16233926 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141407 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976408 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956567 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029128 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941725 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997995 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885424 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841154 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064611 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092492 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46061367 1 - 159171411 G i calJac3.chr5 C 0 I 1169 s saiBol1.JH378271 1783750 1 + 3513951 G i saiBol1.JH378271 C 0 I 1187 s aotNan1.NW_018502359v1 6944470 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 I 2678 s otoGar3.GL873537 22751517 1 + 28711273 G i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22036688 1 - 122082543 G i mm10.chr11 C 0 C 0 s dasNov3.JH570468 350126 1 - 852752 G i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35868400 251 - 65901067 I e canFam3.chr9 21369555 0 + 61074082 C e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I a score=710067.000000 s hg38.chr17_GL383564v2_alt 40037 104 + 133151 TACCCAATGGCATCGGTGTTTATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGGAAGTGTTTAAGCA---TAGACCTCCCGAAAACATAGAGGGCC s panTro5.chr17 16233927 104 + 83181570 TACCCAATGGCATCGGTGTTTATCAAGAAAGGGC--ATCTC---TCTTTGACTCTCATGAAGACCCATGGAAGTGTTTAAGCA---TAGACCTCCCGAAACCATAGAGGGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141408 104 + 83442489 TACCCAATGGCATCGGTGTTTATCAAGAAAGGGC--ATCTC---TCTTTGACTCTCATGAAGACCCATGGAAGTGTTTAAGCA---TAGACCTCCCGAAACCATAGAGGGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976409 104 + 4267968 TACCCAATGGCATTGGTGTTTATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCACGGAAGTGTTTAAGCA---TAGACCTCCCGAAACCACAGAGGGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956568 104 - 2193130 TGCCTGATGGCATTGGTGTTTACCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAAACCCATGGAAGTGTTTAAGCA---TAGACCTCCCGAAACAATAGAGGGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029129 104 - 77216781 CGCCCGATGGCATCAGTGTATATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGAAAGTGCTTAACTA---TAGACTTCCTGAAACCTCAGAGGGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941726 104 - 80997621 CGCCCGATGGCATCAGTGTATATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGAAAGTGCTTAACTA---TAGACTTCCTGAAACCTCAGAGGGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1997996 104 + 10377808 CGCCTGATGGCATCAGTGTATATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGAAAGTGCTTAACTA---TAGACTTCCTGAAACCTCAGAGGGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885425 104 - 8458610 CGCCCGATGGCATCAGTGTATATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGAAAGTGCTTAACTA---TAGACTTCCTGAAACCTCAGAGGGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841155 104 + 75148670 CACCCGATGGCATCAGTGTATATCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGAAAATGTTTAACCA---TAGACTTCCTGAAACCTCAGAGGGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064612 104 + 4244037 CGCCCGATGGCATCAGTGTATGTCAAGAAAGGGC--ATCTT---TCTTTGACTCTCATGAAGACCCATGAAAGTGCTTAACTG---TAGACTTCCTGAAACCTCAGAGGGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092493 104 + 4569836 CTCCCAATGGCATCAGTGTATATCAAGAAAGGGC--ATCTT---TCTTTGACTTTCATGAAGACCCATGAAAGTGTTTAACCA---TAGACTTCCTGAAACCTCAGAGGGCC i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22751518 96 + 28711273 GGTCGGATGGCATCAGATTTTGTCAAGAAAGGGC--A-------TCTTTAACTCTGACGATGACCTACAGA-----TTAGGAAGGTTAGACTTTCTGGAACCTCAGAGGG-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22036689 103 - 122082543 GGGTCGAGGAGAGCAGTATTTGTCAAGAAAGAAC--ACCTT---CTTTTAACTGTAAGGAAGATCCACAGAAATG-ACAAGCG---TTGACTTTCTCAAACCCCAGAGGACC i mm10.chr11 C 0 I 3587 s canFam3.chr9 21369555 90 + 61074082 -----AATGACATCAGGAT---TCAAGAAAGGCTTGAACTTGAATCTTTAACTTCAGAAAAGAGCCAAGGAAATG-TTAAACA---TTGAC----------CCCAGAGGACC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 350127 92 - 852752 GGGCTGAGGGCATC-----------AGGACGGGC--ATCTT---TATTTACCTCTAATAAAGATCCACTGAGGTG-ATAAGCT---CTGACTTGCTAAAACCTCAGAGGATC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35868400 251 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=270405.000000 s hg38.chr17_GL383564v2_alt 40141 41 + 133151 ATTTTGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAC s panTro5.chr17 16234031 41 + 83181570 ATTTTGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141512 41 + 83442489 ATTTTGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976513 41 + 4267968 ATTTTGATCTGAAGGGATCAG---------AGGTC--TTTGA---CTTTTCCCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956672 41 - 2193130 ATTTTGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029233 41 - 77216781 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941830 41 - 80997621 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998100 41 + 10377808 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885529 41 - 8458610 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841259 41 + 75148670 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064716 41 + 4244037 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092597 41 + 4569836 ATTATGATCTGAAGGGATCAG---------AGGTC--TCTGA---CTTTTCCCAC i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22751614 16 + 28711273 ----------------------------------T--TCTGA---CTTTTCCCAC i otoGar3.GL873537 C 0 I 12672 s canFam3.chr9 21369645 50 + 61074082 ATTTTGACATGAAAGGATCAGATACCACTCAGGTT--TCTAC---CTTTTCCCAT i canFam3.chr9 C 0 I 12 s dasNov3.JH570468 350219 44 - 852752 ACTTTGA--GGTAGAGATCAA---------AGACCAGTCAGATCTCTTTCCCCAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35868400 251 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=39825.000000 s hg38.chr17_GL383564v2_alt 40182 6 + 133151 --CACACC s panTro5.chr17 16234072 6 + 83181570 --CACACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141553 6 + 83442489 --CACACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976554 6 + 4267968 --CACACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956713 6 - 2193130 --CACACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029274 6 - 77216781 --CACACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941871 6 - 80997621 --CACACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998141 6 + 10377808 --CACACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885570 6 - 8458610 --CATACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841300 6 + 75148670 --CACACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064757 6 + 4244037 --CACACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092638 6 + 4569836 --CACACC i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22764302 6 + 28711273 --CACATG i otoGar3.GL873537 I 12672 C 0 s canFam3.chr9 21369707 6 + 61074082 --CATACC i canFam3.chr9 I 12 C 0 s dasNov3.JH570468 350263 6 - 852752 TATATA-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35868400 251 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=516348.000000 s hg38.chr17_GL383564v2_alt 40188 60 + 133151 AGGCTTTCCCA--GCGGGTATCAGACTCCACCTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT s panTro5.chr17 16234078 60 + 83181570 AGGCTTTCCCA--GCGGGTATCAGACTCCACCTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141559 60 + 83442489 AGGCTTTCCCA--GCGGGTATCAGACTCCACCTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976560 60 + 4267968 AGGCTTTCCCA--GCGGGTATCAGACTCCACCTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956719 60 - 2193130 AGGCTTTCCCA--GCAGGTATCAGACTCCACTTGGGTGAAACT-TAGTCCTGTGTCCTAAAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029280 60 - 77216781 AGGCTTTCCTA--GCAGGAATCAGACTCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941877 60 - 80997621 AGGCTTTCCTA--GCAGGAATCAGACTCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998147 60 + 10377808 AGGCTTTCCTA--GCAGGAATCAGACTCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885576 60 - 8458610 AGGCTTTCCCA--GCAGGAATCAGACTCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841306 60 + 75148670 AGGCTTTCCCA--GCAGGAATCAGACTCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064763 60 + 4244037 AGGCTTTCCCA--GCAGGAATCAGACTCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092644 60 + 4569836 AGGCTTTCCCA--GCAGGAATCAGACCCCACTTGGGTGAAACA-TAGTCCTGTGTCCTAAAAT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35868651 61 - 65901067 AGGCTTTCCCA-GGCAGGTGTCAGACTCCACTTGGGTGAAACA-TAATCTTGTGTTCTAAAAT i micMur3.chr16 I 251 I 31 s otoGar3.GL873537 22764308 62 + 28711273 AGGCTTTCCAA-GGCAGGTATCAGACTACACTTGGGTGAAACATTAATTTTGTGTTGTAAAAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21369713 61 + 61074082 AGGCGTTCTGA-GGCAGATATCAGACCCTGCTTTGGTGAAACA-TAATCTTGTGCAATGAAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 350269 59 - 852752 GGGCTTTTGGGGGGCACATATCGGACTCCACTTTGGTAAAACA---GCCCTGTGTACTGAGT- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=248472.000000 s hg38.chr17_GL383564v2_alt 40248 103 + 133151 GATCAAGTGAATCGGAATTTtatatgtatatat--------atatataaataaatatatata--------aaaaatat-----atTTTTGTTTGTTTTCATAAAGCGA----TGA-TTCTCTCCACC--AT s panTro5.chr17 16234138 109 + 83181570 GATCAAGTGAATCGGAATTTTGtatgtatatat--atataaatatatatataaaaatatata--------aaaaatat-----atTTTTGTTTGTTTTCCTAAAGCGA----TGA-TTCTCTCCACC--AT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141619 95 + 83442489 GATCAAGTGAATCGGAATTTTGtatgtatatat--------atat--------aaatatata--------aaaaatat-----atTTTTGTTTGTTTTCCTAAAGCGA----TGA-TTCTCTCCACC--AT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976620 120 + 4267968 GATCAAGTGAATCGGAATTTtatatatataaatagatataaatatatatataaatatatataaatatattaaaaatat-----atTTTTGTTTGTTTTCATAAAG-GA----TGA-TTCTCTCCACCATAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956779 108 - 2193130 GATCGAGTGAATCGGAATTTtatatatatatat--------atatatatatatatatatTtt--------gttgttgttgttgttgtttgtttgttTTCATAAAGCAA----TGA-TTCTCTCCACC--AT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029340 57 - 77216781 GATCAAGTGAATTGAAATT----------------------------------GTATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941937 57 - 80997621 GATCAAGTGAATTGAAATT----------------------------------GTATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998207 57 + 10377808 GATCAAGTGAATTGAAATT----------------------------------GTATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885636 57 - 8458610 GATCAAGTGAATTGAAATT----------------------------------GTATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841366 57 + 75148670 GATCAAGTGAATTGAAATT----------------------------------ATATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064823 57 + 4244037 GATCAAGTGAATTGAAATT----------------------------------GTATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092704 57 + 4569836 GATCAAGTGAATTGAAATT----------------------------------ATATATATA---------------------------------TTTGATAAAGCAA----TGA-TTCTCTCCACC--AT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22764370 69 + 28711273 ----TAATGCATTGAAATTTTATGTATATATGT--------------------ATATTTATA-------------------------------TTTTTGATAAAGCAA----CTA-TTCTTTGTCCC--AC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21369774 61 + 61074082 AACCAGATGGTTTAAAATT----------------------------------ACATATATA---------------------------------TTTGATAAAGCAACTATTTA-TTGTTTCTACC--AT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 350328 57 - 852752 AATCAAATAAGTGGGGATG----------------------------------ATG-ATTTC---------------------------------TTTTAAAAAGCAA----CTATTTTTTTCTACT--AT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35868712 31 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=906193.000000 s hg38.chr17_GL383564v2_alt 40351 102 + 133151 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTTG--TGCTTTGCTGCTTGGCTTGTGAGAAACCTCTGACCTGGAACTCTG s panTro5.chr17 16234247 102 + 83181570 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTTG--TGCTTTGCTGCTTGGCTTGTGAGAAGCCTCTGACCTGGAACTCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141714 102 + 83442489 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTTG--TGCTTTGCTGCTTGGCTTGTGAGAAGCCTCTGACCTGGAACACTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976740 102 + 4267968 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTTG--TGCTTTGCTGCTTGGCTTGTGAGAAGCCTCTGACCTGGAACTCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956887 102 - 2193130 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAACTTCCAGATCGGATTTGGATTTG--TGCTTTGCTGCTTGGCTTGTGAGAAGCCTCTGACCTGGAACTCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029397 102 - 77216781 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTCG--TGCTTTGCTGCGTGGCTTGTGAGAAGCCTCTGACCTGGAATTCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27941994 102 - 80997621 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTCG--TGCTTTGCTGCGTGGCTTGTGAGAAGCCTCTGACCTGGAATTCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998264 102 + 10377808 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTCG--TGCTTTGCTGCGTGGCTTGTGAGAAGCCTCTGACCTGGAATTCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885693 102 - 8458610 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTAGATTTG--TGCTTTGCTGCGTGGCTTGTGAGAAGTCTCTGACCTGGAATTCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841423 102 + 75148670 AATTTCTCCCTTGATTCTCCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTCG--TGCTTTGCTGCGTGGCTTGTGAGAAGCCTCTGACCTGGAATTCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064880 102 + 4244037 AATTTCTCCCTTGATTCTTCTTTTGAAAACTCAAGTTCCAGGATGGATTTAGATTTG--TGCTTTGCTGCGTGGCTTGTGAGAAGTCTCTGACCTGGAATTCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092761 102 + 4569836 AATTTCTCCCTTGATTCTTCTTTTTAAAACTCAAGTTCCAGGATGGATTTGGATTTG--CGCTTTGCTGCGTGGCTTGTGAGAAGTCTCTGACCTGGAATTCTG i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35868743 101 - 65901067 AATTTCTCCCTTGAGTCTTATTTTTAAAACTGAAGTTCCAGGATGGATTCAGATTTGCACACTGTGCCACTTGGCTTGTGAGAAGCCTCTGACCTGGGAGT--- i micMur3.chr16 I 31 C 0 s otoGar3.GL873537 22764439 104 + 28711273 AATTTCTACCTTGAGTCTTGTTTGGAAAACTGAAGTTCTGGGATGGATTCAGATTTGCACACCTTGCCACTTGGTTTGTGAGAAGCCTCTGACCTGGGAAtttg i otoGar3.GL873537 C 0 T 10415 s canFam3.chr9 21369835 104 + 61074082 AATTAACCCCATGACCCTTATTTTTAAAGCCCAATTTCCAGGGTGGATTCAAATTTGCACATCTTACTGCTTGGTTTGTGAGCAGACTCTGACCTGGAATCCCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 350385 101 - 852752 AATTTCTCCCTTGATCCTTATTATTAAAATTCAAGCTCCAGCATGGATTCAGATTTGAGTACCCTGTTACTT---TTGTGAGAAGTCCCTGCCCTGGAATTCTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1396819.000000 s hg38.chr17_GL383564v2_alt 40453 177 + 133151 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGAGGCTCTCTCTCATGTTG-CTTGTTTCTTTATTCCACATCCTGCTTATGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- s panTro5.chr17 16234349 177 + 83181570 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGAGGCTCTCTCTCATGTTG-CTTGTTTCTTTATTCCACATCCTGCTTATGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagaaagaataattgtccc-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141816 177 + 83442489 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGAGGCTCTCTCTCATGTTG-CTTGTTTCTTTATTCCACATCCTGCTTATGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3976842 177 + 4267968 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGAGGCTCTCTCTCATGTTG-CTTGTTTCTTTATTCCACATCCTGCTTATGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1956989 177 - 2193130 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGAGGCTCTCTCTCATGTTG-CTTGTTTCTTTATTCCACATCTTGCTTATGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029499 174 - 77216781 TCTCTACTATGATTCACC-CAGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGACGGTCTCTCTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTAAGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacag---agatgtccc-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942096 177 - 80997621 TCTCTACTATGATTCACC-CAGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGACGGTCTCTCTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTAAGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998366 177 + 10377808 TCTCTACTATGATTCACC-CAGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGACGGTCTCTGTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTAAGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885795 177 - 8458610 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGACGGTCTCTCTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTAAGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841525 177 + 75148670 TCTCTACTATGATTCACC-CAGTGTCTGCGATTTCCTCCAAACCCAAGGTCAACCTCAGTCCAGACGCTCTCTCTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTACGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2064982 177 + 4244037 TCTCTACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCAGACGGTCTCTCTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTAAGTATATTATTTTACAATAATACAAAAGTACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2092863 177 + 4569836 TCTCCACTATGATTCACC-CTGTGTCTGTGATTTCCTCCAAACCCAAGGTCAAGCTCAGTCCGGAGGCTCTCTCTCATGTTG-CTTGTTTCCTTTTTCCACATCCTGCTTACGTATATTATTTTACAATAATACAAACATACTGCTAATAGCTCCtgtggtagacagaataattgtccc-- i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35868844 177 - 65901067 TCTCTGCTATGATTCACT-CCTTGTCTGTGATTTCCTGCATGTCCAAGGTCAAACTCTGTCTAGAGGCCCTCTGTAATTTTG-CTTGTTTCTTTATTCCACATCCTGCGTGAGTATCTTATTTTACAATAATACAAAAGTCATGCTAATAGCTCCTGTGCTAAGTAGAATAATTGTCCC-- i micMur3.chr16 C 0 I 21 s canFam3.chr9 21369939 174 + 61074082 TGTCTGATATGGTCCACTACAGTGTCTGTGATTTCCTCCAAATGTAAGGTTAATCTCAGGTCAGAGGCCCTCCCTAATTTTTCCTTGTTCCTTTATTCCATATCCTGCTTGCATAGA-----TTACAATAATGCAAAAGTAATGCTTGTGGCTGCtgtggaaagtggaatacctgtctc-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 350486 176 - 852752 TCTCTGCTATGATTTGCCGCTGTGGTT--GATGTCCTACAAATCTGAGGTCAAGCTCAAACCAGAGGCCCTCTCTAAATTTG-CTTGTTCCTTTATTCCACATCCTGGTTACATATATTACTATTTAATAATACAAA-GTAATACTCATAGCTCCCAtggtaggcagaataa-tgtccacc i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e otoGar3.GL873537 22764543 10415 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=105865.000000 s hg38.chr17_GL383564v2_alt 40630 17 + 133151 ctccatccctcatcaaa s panTro5.chr17 16234526 17 + 83181570 ctccatccgtcatcaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16141993 17 + 83442489 ctccatccgtcatcaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3977019 17 + 4267968 ctccatccctcatcaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1957166 17 - 2193130 ctccatccctcatcaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029673 17 - 77216781 ctccatctctcaccaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942273 17 - 80997621 ctccatctctcaccaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998543 17 + 10377808 ctccatctctcaccaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885972 17 - 8458610 ctccatctctcaccaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841702 17 + 75148670 ctccatctctcaccaga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2065159 17 + 4244037 ctccatctctcaccaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2093040 17 + 4569836 ctccatctctcaccaaa i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21370113 14 + 61074082 ---cccttctctgcaaa i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 350662 17 - 852752 cccctccccccaccaaa i dasNov3.JH570468 C 0 I 1 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35869021 21 - 65901067 I e otoGar3.GL873537 22764543 10415 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=679354.000000 s hg38.chr17_GL383564v2_alt 40647 90 + 133151 atgttcatgttctaattcctggaacctgggaatatgttagattacataaaaaagga--aatcgaagttgc----agatggaatt-aaagttgctaat s panTro5.chr17 16234543 90 + 83181570 atgttcatgttctaattcctggaacctgggaatatgttagattacataaaaaagga--aatcgaagttgc----agacggaatt-aaagttgctaat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16142010 90 + 83442489 atgttcatgttctaattcctggaacctgggaatatgttagattacataaaaaagga--aatcgaagttgc----agacggaatt-aaagttgctaat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3977036 90 + 4267968 atgttcatgttctaattcctggaacctgggaatatgttagattacataaaaaagga--aatcaaagttgc----agacagaatt-aaagttgctaat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1957183 90 - 2193130 atattcatgttctaattcccggaatctgggaatatgctagattacataaaaaagga--aatcgaagtcgc----agatggaatt-aaagttgctaat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029690 91 - 77216781 atgttcatgttctaattcctggaacctgggaatatgttagattacctataaaagga--aatcgaagttgc----agagggaattaaaagttgctaat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942290 91 - 80997621 atgttcatgttctaattcctggaacctgggaatatgttagattacctataaaagga--aatcgaagttgc----agagggaattaaaagttgctaat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998560 91 + 10377808 atgttcatgttctaattcctggaacctgggaatatgttagattacctataaaagga--aatcgaagttgc----agagggaattcaaagttgctaat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1885989 91 - 8458610 atgttcatgttctaattcctggaacctgggaatatgttagattacctataaaagga--aatcgaagttgc----agagggaattaaaagttgctaat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841719 90 + 75148670 atgttcatgttctaattcctggaacctgggaatatgttagattacctattaaagga--aatcgaagttgc----agagggaatt-aaagttgctaat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2065176 91 + 4244037 atgttcatgttctaattcctggaacctgggaatatgttagattacctattaaagga--aatcgaagttgc----agagggaattaaaagttgctaat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2093057 90 + 4569836 atgttcatgttctaattcctggaacctgggaatatgttagattacatataaaagga--aatcgaagttgc----agagggaatt-aaagttgctaat i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35869042 90 - 65901067 atgtccatgttctaattcctggaatctgagaatgtgttagattgcacacaaaagga--aattaaggttgc----agatggcatt-caagctgttcat i micMur3.chr16 I 21 C 0 s canFam3.chr9 21370128 81 + 61074082 atgcccatattgt--tttctggaacc------catgttaggctacc-acaaaggga--aattagaggcac----ggatggaatt-aaagctgctaac i canFam3.chr9 I 1 I 216 s dasNov3.JH570468 350680 96 - 852752 atgttcatgtcctaattcttggaacatgagaatatgttaggctacatgggaaagggacaattagggttgcagatagatagaatt-aaagttgccaat i dasNov3.JH570468 I 1 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e otoGar3.GL873537 22764543 10415 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=149975.000000 s hg38.chr17_GL383564v2_alt 40737 19 + 133151 cagctgactttacgatagg s panTro5.chr17 16234633 19 + 83181570 cagctgactttacgatagg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16142100 19 + 83442489 cagctgactttacgatagg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3977126 19 + 4267968 cagctgactttacgatagg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1957273 19 - 2193130 cagctgacttcgtgatagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029781 19 - 77216781 caactgactttatgatagg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942381 19 - 80997621 caactgactttatgatagg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998651 19 + 10377808 caactgactttatgatagg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1886080 19 - 8458610 caactgactttatgatagg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841809 19 + 75148670 caactgactttatgatagg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2065267 19 + 4244037 caactgactttatgatagg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2093147 19 + 4569836 caactgactttatgatagg i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35869132 19 - 65901067 ccgctgactttatgatagg i micMur3.chr16 C 0 I 2687 s canFam3.chr9 21370425 19 + 61074082 cagttgactttagaatggg i canFam3.chr9 I 216 C 0 s dasNov3.JH570468 350776 19 - 852752 caactgatcttaaaataga i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e otoGar3.GL873537 22764543 10415 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=2096197.000000 s hg38.chr17_GL383564v2_alt 40756 353 + 133151 gagattatctcggattatcaggtggac------------tcagggttcttaaaagtggaagagggaggcaga-----agagtgagaaggtgatgaaactatggacccaggtcagagtgatgtgatgtgagaagaacctgccttgtccttg-------------------------caggatttgaagatggaggaagtgggtcatgagccaaagaatgcaggtcatctctagaccttgga------aaaagcaa------ggattctcctctagaccctttaaagagaaacgtaaccttgccagacctctgatttta--------------------------------ttttta-----------------------------------------ttgtggtaaaa--------tatg---------------------tacaacat----------aaaatttaccat---------------------------------------tttagcc--------------attttt-aatgtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacattcacatt---------------- s panTro5.chr17 16234652 353 + 83181570 gagattatctcggattatcaggtggac------------tcagcgttcttaaaagtggaagagggaggcaga-----agagtgagaaggtgatgaaactatggacccaggtcagagtgatgtgatgtgagaagaacctgccttgtccttg-------------------------caggatttgaagatggaggaagtgggtcatgagccaaagaatgcaggtcatctctagaccttgga------aaaagcaa------gcattctcctctagaccctttaaagagaaacacaaccctgccagccctctgatttta--------------------------------ttttta-----------------------------------------ttgtggtaaaa--------tatg---------------------tacaacat----------aaaatttaccat---------------------------------------tttagcc--------------attttt-aatgtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacattcacatt---------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16142119 353 + 83442489 gagattatctcggattatcaggtggac------------tcagggttcttaaaagtggaagagggaggcaga-----agagtgagaaggtgatgaaactatggacccaggtcagagtgatgtgatgtgagaagaacctgccttgtccttg-------------------------caggatttgaagatggaggaagtgggtcatgagccaaagaatgcaggtcatctctagaccttgga------aaaagcaa------gcattctcctctagaccctttaaagagaaacacaaccctgccagccctctgatttta--------------------------------ttttta-----------------------------------------ttgtggtaaaa--------tatg---------------------tacaacat----------aaaatttaccat---------------------------------------tttagcc--------------attttt-aatgtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacattcacatt---------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3977145 352 + 4267968 gagattatctcggattatcaggtggac------------tcag-gttcttaaaagtggaagagggaggcaga-----agagtgagaaggtgatgaaactatggacccaggtcagagtgatgtgatgtgagaagaacctgccttgtccttg-------------------------caggatttgaagatggaggaagtgggtcatgagccaaagaatgcaggtcatctctagaccttgga------aaaagcaa------ggattctcctctagaccctttaaagagaaacacaaccctgccagccctctgatttta--------------------------------ttttta-----------------------------------------ttgtggtaaaa--------tatg---------------------tacaacat----------aaaatttaccat---------------------------------------tttagcc--------------attttt-aatgtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacattcacatt---------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1957292 353 - 2193130 gagattatctcggattatcaagtggac------------tcagggtttttaaaagtggaagagggaggcaga-----agagtgagaaggagatgaaactctggacataggtcagagtgatgtgatgtgagaagaacctgccttgttcttg-------------------------caggatttgaagatggaggaagtgggtcatgagccaaagaatgcaggtcatctttagaccttgga------aaaagcaa------ggattctcctctggatcctttaaagagaaacacaaccctgccagccctctgatttta--------------------------------ttttta-----------------------------------------ttgtggtaaaa--------tatg---------------------tacaacat----------aaaatttaccat---------------------------------------tttagcc--------------attttt-aatgcacaattcaggga------------------------------------------------------------------------------------------------cgttaag-----------------------------------tacatccacatt---------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30029800 352 - 77216781 gagattatctcggattatcaggtggac------------tcagggctcttaaaagtggaagagggaggcaga---agagagtgagagggagaggaaactatggacataggtcagagtgacgcgatgtgagaagaacttgccttgtccttg-------------------------c--gatttgaagatggaggaagtgcgtcatgagccaaagaatgtaggtcgtctctagaccctgga------aagagcaa------ggattctcctcgggatcctttagagaggaacacaaccctgccagccctctgatttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tatg---------------------cacaacat----------aaaatttaccat---------------------------------------tttagca--------------attttt-aaggtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacatccacatt---------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942400 352 - 80997621 gagattatctcggattatcaggtggac------------tcagggctcttaaaagtggaagagggaggcaga---agagagtgagagggagaggaaactatggacataggtcagagtgacgcgatgtgagaagaacttgccttgtccttg-------------------------c--gatttgaagatggaggaagtgcgtcatgagccaaagaatgtaggtcgtctctagaccctgga------aagagcaa------ggattctcctcgggatcctttagagaggaacacaaccctgccagccctctgatttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tatg---------------------cacaacat----------aaaatttaccat---------------------------------------tttagca--------------attttt-aaggtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacatccacatt---------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1998670 377 + 10377808 gagattatctcggattatcaggtggac------------tcagggctcttaaaagtggaagagggaggcaga---agagagtgagagggagaggaaactatggacataggtcagagtgacgcaatatgagaagaacttgccttgtccttgcgatttgaagatggaggaagtgcgtc--gatttgaagatggaggaagtgcgtcatgagccaaagaatgtaggtcgtctctagaccctgga------aagagcaa------ggattctcctcgggatcctttagagaggaacacaaccctgccagccctctgatttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tatg---------------------cacaacat----------aaaatttaccat---------------------------------------tttagca--------------attttt-aaggtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacatccacatt---------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1886099 352 - 8458610 gagattatcttggattatcaggtagac------------tcagggctcttaaaagtggaagagggaggcaga---agagagtgagaaggagaggaaactacggacataggtcagagtgacgcgatgtgagaagaacttgccttgtccttg-------------------------c--aatttgaagatggaggaagtgcgtcatgagccaaagaacgtaggtcgtctctagaccctgga------aagagcaa------ggattctcctcgggatcctttagagaggaacacaaccctgccagccctctgatttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tacg---------------------cacaacat----------aaaatttaccat---------------------------------------tttagca--------------attttt-aaggtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacacccacatt---------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64841828 351 + 75148670 gagattatctcggattatcaggtggac------------tcagggctcttaaaagtggaagagggaggca-a---agagagtgagagggagaggaaactatggacataggtcagagtgacgcgatgtgagaagaacttgccttgtccttg-------------------------c--aatttgaagatggaggaagtgcgtcatgagccaaagaatgtaggtcgtctctagaccctgga------aagagcaa------ggattctcctcgggatcctttagagaggaacacaaccctgccagccctctgatttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tatg---------------------cacaacat----------aaaatttaccat---------------------------------------tttagca--------------attttt-aatgtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacatccacatt---------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2065286 341 + 4244037 gagattatcttggattatcaggtagac------------tcagggctcttaaaagtggaagagggaggcaga---agagagtgagagggagaggagactatggacataggtcagagtgacgcgatg-----------tgccttgtccttg-------------------------c--aatttgaagatggaggaagtgcgtcatgagccaaagaacgtaggtcgtctctagaccctgga------aagagcaa------ggattctcctcaggatcctttagagaggaacacaaccctgccagccctctgatttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tatg---------------------cacaacat----------aaaatttaccat---------------------------------------tttagca--------------attttt-aaggtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacatccacatt---------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2093166 351 + 4569836 gagattatcttggattatcaggtggac------------tcaagtctcttaaaagtggaagagggaggcaga---aaagagtgagagggagacgaaactatggacacaggtcagagtgatgcgatgtgagaagaacttgccttgtccttg-------------------------caggatttgaaga---aggaagtgcgtcatgagctaaagaatgcaggtcgtctctagaccctgga------aagagcaa------ggattccccttgggattctttagagaggaacacaaccctgccagccctctggtttt---------------------------------ttctta-----------------------------------------ttatggtaaaa--------tatg---------------------cacaacac----------aaaatttaccat---------------------------------------tttagca--------------attttt-aatgtacaattcagggg------------------------------------------------------------------------------------------------cattaag-----------------------------------tacatccacatt---------------- i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21370444 380 + 61074082 gagattaaactggattatccagtggccccaatgtaatcaccagcgtccttcaaaatggaag-gggaggcaga---ggacagtgagagggagatctgactggggacacaggtcagagtgatgtgatgtg---aggactggatccctcattg-------------------------caggatctgaagatggaggaagggggccacaaacc-aagaaaggaggtagcttctagctgctgga------gaagaaaaggaaatggattctctgttggagtctccagaaaggagcatagccctggcaacaccttgattttattc-----------------------------ttttta-----------------------------------------ttgtggaaaaatatatcggtata---------------------tataacat----------aaaatttaccat---------------------------------------tttatct--------------ttttttaaatgtttaattcagggg------------------------------------------------------------------------------------------------catcaag-----------------------------------tacattcacatt---------------- i canFam3.chr9 C 0 I 2137 s dasNov3.JH570468 350795 678 - 852752 gagattattctggattatctgctggggatgggggcaatgtaagggtgcctaaaagtggaagagggaggcaaaagaagagaggcagcgggagatgcgactatggaaa-aagtcagagtgatgtgatgtgag-aggactggaccattcattg-------------------------ctgactttgaagaggaagaaaggatgacatgagcctaggaatgaaagcagcctctagaagctggaagagccaaagacaa------ggagcctcccctagagcctccagaaaagaatgcagtcctgccaacatcttgattataaccaaaatcttggttttagtttcatattacaattctgacctacagaactcacagataatacatttatgttgttttacgtttgtggtaatt--------catgacagcagcaatagaaaactaatacagcttctgtctattgaatatctactatgggttaggcgaaaatactaggagcttaatctaattaaccttcagcacaactctgcaaattattcct-attttataggtgaggaaatggagcttcagataatgctcaagatcacaattgcttattagcaatgatgggatttgaaacaggtTGTATCTACAGTTGCACATAAGATACCACACCACTAAGTGTGGAGAATAAtctaaaaaccagagcagaactaatacatccaggtcaacaacatccttcaaa i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35869151 2687 - 65901067 I e otoGar3.GL873537 22764543 10415 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=854979.000000 s hg38.chr17_GL383564v2_alt 41109 113 + 133151 gttgAACCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGAGTCACAATCCTATGGAGGTGGTTT-TAAAAatg--------------atccaaa s panTro5.chr17 16235005 113 + 83181570 gttgAACCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGAGTCACAATCCTATGGAGGTGGTTT-TAAAAatg--------------atccaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16142472 113 + 83442489 gttgAACCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGAGTCACAATCCTATGGAGGTGGTTT-TAAAAatg--------------atccaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3977497 113 + 4267968 gttgAACCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGAGTCACAATCCTATGGAGGTGGTTT-TAAAAatg--------------atccaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1957645 113 - 2193130 gttgAACCCTATACACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTACGAGTCACAGTCCTATGGAGGTGGTTT-TAAAAatg--------------atccaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30030152 113 - 77216781 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTTTTCAGGAACTGCCTTTAGATTCAATTATGTGTCACAATCCTATGAAGGTGGTTT-TAAAAatg--------------atccaac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942752 113 - 80997621 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGTGTCACAATCCTATGAAGGTGGTTT-TAAAAatg--------------atccaac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1999047 113 + 10377808 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGTGTCACAATCCTATGAAGGTGGTTT-TAAAAatg--------------atccaac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1886451 113 - 8458610 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGTGTCACAATCCTATGAAGGTGGTTT-TAAAAatg--------------atccaac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64842179 113 + 75148670 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTACCTTTAGATTCAATTATGAGTCACAATCCTATGGAGGTGGTTT-TAAAAatg--------------atccaac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2065627 113 + 4244037 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAATTATGTGTCACGATCCTATGAAGGTGGTTT-TAAAAatg--------------atccaac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2093517 113 + 4569836 gttgtacCCTATGCACAGATTCCCACTAATTTTTGGCAAGTCTCTTCAGGAACTGCCTTTAGATTCAGTTATGAGTCACAATCCTATGAAGGTGGTTT-TAAAAatg--------------atccaac i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22754128 127 + 28711273 gttgtctcctctgtgcacatttcaacTAATTTTTGGCAACTCTCCTCAGGAATTGGCTTTAGAGTCAATTATAAGTCACAATCATAAGGAGGTTTTTT-TTGGTGTGTGTGTTTGCTGTGTAGCTGAT i otoGar3.GL873537 T 10415 I 2 s canFam3.chr9 21372961 113 + 61074082 GTTGTTCCTTACACACAGATTCCAGCTTAATTTTGGCAAGTCTCTTTAAT-TTTGGCTTTCAAATCAGTTATGAGTTACAATCATATGGAGGTGTTTTATTTAAatt--------------atctaac i canFam3.chr9 I 2137 C 0 s dasNov3.JH570468 351473 104 - 852752 gttgtcccctacacacttattcctactaatttttggcaagtctctttgggaattggctttagagtcacttatgagccacaatcacatggaggtttttc-tctaac----------------------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35869151 2687 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=4469661.000000 s hg38.chr17_GL383564v2_alt 41222 541 + 133151 ttgattgtctacgtcactcacaaggtttctctttgaacagcttcaaaaaagtcaaacctatcctcaaaggac-aaaggtttgttatcagcaaactggatattaaaaagaTACAGACATTAACAAAACA-GAACTTTCTAAACGTGCTTTGACTAGAGATGGCATC----CTGGAATAAAGAAAAATTCTGGCTGGAGGCAAAATTTATAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATCGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-ATGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcagtggttctcaacctt-ggctgtg-----------------------------tttgaaatcacccagggaacttaaacaattttttgaggcttgagtctgctctcagggagtctgatt-----taattgatctgggattcagcctggtcactgggagttttaga-agctctacaggtgatgagcctccaatgagctaggttgagactcactTACCagaacctggattctagctctg s panTro5.chr17 16235118 541 + 83181570 ttgattgtctacgtcactcacaaggtttctctttgaacagcttcaaaaaagtcaaacctatcctcaaaggac-aaaggtttgttatcagcaaactggatattaaaaagatacagacattaacaaaaca-gaaatttctaaacatgctttgactagagatggcatc----ctggaataaAGAAAAATTCTGGCTGGAGGCAAAATTTATAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATCGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-ATGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcagtggttctcaacctt-ggctgtg-----------------------------tttgaaatcacccagggaacttaaacaattttttgaggcttgagtctgccctcagggagtctgatt-----taattgatccgggattcagcctggtcactgggagttttaga-agctttacaggtgatgagcctccaatgagctaggttgagactcactTACCAGAacctggattctagctctg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16142585 541 + 83442489 ttgattgtctacgtcactcacaaggtttctctttgaacagcttcaaaaaagtcaaacctatcctcaaaggac-aaaggtttgttatcagcaaactggatattaaaaagatacagacattaacaaaaca-gaaatttctaaacatgctttgactagagatggcatc----ctggaataaAGAAAAATTCTGGCTGGAGGCAAAATTTATAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATCGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-ATGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcagtggttctcaacctt-ggctgtg-----------------------------tttgaaatcacccagggaacttaaacaattttttgaggcttgagtctgccctcagggagtctgatt-----taattgatccgggattcagcctggtcactgggagttttaga-agctttacaggtgatgagcctccaatgagctaggttgagactcactTACCagaacctggattctagctctg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3977610 541 + 4267968 ttgattgtctacgtcactcacaaggtttctctttgaacagcttcaaaaaagtcaaacctatcctcaaaggac-aaaggtttgttatcagcaaactggatattaaaaagatacagacattaacaaaatg-gaaatttctaaacatgctttgactagagatggcatc----ctggaataaAGAAAAATTCTGGCTGGAGGCAAAATTTATAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATCGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-ATGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcagtggttctcaacctt-ggctgtg-----------------------------tttgaaatcacccagggaacttaaacaattttttgaggcttgagtctgccctcagggagtctgatt-----ttattgatctgggattcagcctggtcactgggagttttaga-agctctacaggtgatgagcctccaatgagctaggttgagactcactTACCagaacctggattctagctctg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1957758 541 - 2193130 ttgattgtctacgtcactcacaaggtttctctttgaacagcttcaaaaaagtcaaacctatcctcaaaggac-aaaggtttgctattagcaaactggatattaaaaagatacagacattaacaaaaca-gaaatttctaaacatgctttgactagagacggcatc----ctggaataaAGGAAAATTCTGGCTGGAGGCAAAATTTATAGGATCTGTAAATTCCGCCATG-----TTTTTTAAACCATAAAAATCTCAATCATTGTAGCTAC----------------------------ATCTCCCCTTAAACATTTCC-ATGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcagtggttctcaacctt-ggctgtg-----------------------------tttgaaattacccagggaacttaaacaattttttgaggcttgagtctgccctcagggagtctgatt-----taattgatctgggattcagcctggtcactgggagttttaga-agctctgcaggtgatgagcctccaatgagctaggttgagactcattTACCagaacctggattctagttctg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30030265 539 - 77216781 ttgattgtctacgtcactcacaaggtttctctttggacagctttaaaaaagtcaaacctatcctcaaagacc-aaaggtttgctatcagcaaactggatattaaaaggatacggacattaacaaaaca-gaaatttctaaacatgctttgactagagacagcatc----ctggaataaAGGAAAATTCTGGCCGGAGGCAACATTTATAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATTGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-AGGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACATGGCAGGAcggtggttctcagcctt-ggctgtg-----------------------------tttgaagtcacccagggaacttaaa-aaatttttgaggcttgaatttgccctcagggagtctgatt-----taattggtctgggattcaaccctgccactgggagttttaga-agctctacaggtgatgagcctccaa-aagccaggttgagactcactTACCaaaacctggattctagttctg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27942865 539 - 80997621 ttgattgtctatgtcactcacaaggtttctctttggacagctttaaaaaagtcaaacctatcctcaaagacc-aaaggtttgctatcagcaaactggatattaaaaggatacggacattaacaaaaca-gaaatttctaaacatgctttgactagagacggcatc----ctggaataaaggaaaattctggccggaggcaacatttataggatctgtaaattctgccatg-----ttttttaaaccataaaaatctcaattgttgtagctat----------------------------acctcCCCTTAAACATTTCC-AGGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACATGGCAGGAcggtggttctcagcctt-ggctgtg-----------------------------tttgaagtcacccagggaacttaaa-aaatttttgaggcttgaatctgccctcagggagtctgatt-----taattggtctgggattcaaccctgccactgggagttttaga-agctctacaggtgatgagcctccaa-aagccaggttgagactcactTACCaaaacctggattctagttctg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1999160 539 + 10377808 ttgattgtctacgtcactcacaaggtttctctttggacagctttaaaaaagtcaaacctatcctcaaagacc-aaaggtttgctatcagcaaactggatattaaaaggatacggacattaacaaaaca-gaaatttctaaacatgctttgactagagacggcatc----ctggaataaAGGAAAATTCTGGCCGGAGGCAACATTTATAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATTGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-AGGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACATGGCAGGAcggtggttctcagcctt-ggctgtg-----------------------------tttgaagtcacccagggaacttaaa-aaatttttgaggcttgaatctgccctcagggagtctgatt-----taattggtctgggattcaaccctgccactgggagttttaga-agctctacaggtgatgagcctccaa-aagccaggttgagactcactTACCaacacctggattctagttctg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1886564 539 - 8458610 ttgattgtccatgtcactcacaaggtttccctttggacagctttaaaaaagtcaaacctatcctcaaagacc-aaaggtttgctatcagcaaactggatattaaaaggatacggacattaacaaaaca-gaaatttctaaacatgctttgactagagacggcatc----ctggaataaAGGAAAATTCTGGCTGGAGGGAACATTTACAGGATATGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATTGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-AGGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcggtggttctcagcctt-ggctgtg-----------------------------tttgaagtcacccagggaacttaaa-aattttttgaggcttgagtctgccctcagggagtctgatt-----taattggtctggcattcaaccctgccactgggagttttaga-agctctacaggtgatgagcctccaa-aagccaggttgagactcactTACCaaaacctggattctagttctg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64842292 539 + 75148670 ttgattgtctacgtcactcacaaggtttctctttggacagctttaaaaaagtcaaacctatcctcaaagacc-aaaggtttgctatcagcaagctggacattaaaaggatatggacattaacaaaaca-gaaatttctaaacatgatttgactagagacggcatc----ctggaataaaggaaaattctggctggaggtaacatttataggatctgtaaattctgccatg-----ttttttaaaccataaaaatctcaatcgttgtagctat----------------------------acctcCCCTTAAACATTTCC-AGGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACAGCAGGAcggtggttctcagcctt-ggctgtg-----------------------------tttgaagtcacccagggaacttaaa-aaatttttgagacttgagtctgccctcagggagtctgatt-----taattggtctgggattcaaccctgccactgggagttttaga-agctctacaggtgatgagcctccaa-aagccagattgagactcactTACCaaaacctggattctagttctg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2065740 539 + 4244037 ttgattgtctacgtcactcacaaggtttctctttggacagctttaaaaaagtcaaacctatcctcaaagacc-aaaggtttgctatcagcaaactggatattaaaaggatacggacattaacaaaaca-gaaatttctaaacatgctttgactagagacggcatc----ctggaataaAGGAAAATTCTGGCTGGAGGCAACATTTCCAGGATCTGTAAATTCTGCCATG-----TTTTTTAAACCATAAAAATCTCAATTGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-AGGTGGCTTTCAAATTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGAcggtggttctcagcctt-ggctgtg-----------------------------tttgaagtcacccagggaacttaaa-aaaattttgaggcttgagtctgccctcagggagtctgatt-----taattggtctggcattcaaccctgccactgggagttttaga-agctctacaggtgatgagcctccaa-aagccaggttgagactcactTACCaaaacctggattctagttctg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2093630 539 + 4569836 ttgattgtctacatcactcacaaggtttctctttggacagctttaaaaatgtcaaacctatcctcaaagacc-aaaggtttgctatcagcaaactggatattaaaaggatacagacattaacaaaaca-gaaatttctaaatatgctttgactagagatggcatc----ctggaataaAGGAAAATTCTGGCTGGAGGCAACATTTATAGGATCTGTAAATTCTGCCATG-----TTTTCTAAACCATAAAAATCTCAATCGTTGTAGCTAT----------------------------ACCTCCCCTTAAACATTTCC-AGGTGGCTTTCAAACTATTTCCAGGTGCTCTGTCATCATCATCAGACACACGGCAGGATGgtggttctcagcctt-ggctgtg-----------------------------tttgaaatcacccaggcaacttaaa-aaatttctgaggcttgagtctgccctcagggagtctgatt-----taattggtctgggattcaacactgccacggggagttttaga-agctctacaggtgatgaacctccaa-aagccaggttgagactcactTACCaaaacctggattctagttcta i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35871838 566 - 65901067 ttgattgtctacctcatttacaaggtgtctctttgaatggcttcaaacaagtcaaacccatcctcaaagtacaaaagatttgctatcaataaattgggtattaaaaagatacaaacattaccaaaaca-aaaatctcaaaacatgctttgaatagagatagcatt----ccggaataaAGAAAAATTCTGGCCAGAGGCAAAACTTACAGGATTTGTAAATTTG--CATG-----TTTTCTTAAACAGAAAAATCTCAATGTCTGTAGCTTC-TCTTAATTTTGTAAATAAATGTGTTCTACCTCTCC-TGTTCACTTCC-ACGTGGCTTTTAAACTATTTCTAGGTGCTCTGCCAACATCATCAAGCACACAGCATGGcagtggttctcaaccct-ggctgtg----------------------------ctttggaatcacccagggaacagaca-caaattttgaggattgtgtcggccctccgagggtcggatt-----taattggtccgggactcagcctggccactgggagtttcaga-agctccaaaggcgctgaggcttccgtgagccaggttgagagccactTagcagaacctgggttctggttctg i micMur3.chr16 I 2687 I 776 s otoGar3.GL873537 22754257 558 + 28711273 TTGATTTTCCACCTCATTCACAAGGTTTCTTTTTGAACAGCTTCCAACAAGTCAGACCCATCTTTAAAGTAT-AAAGTTTTGCTAAGAATAAACTGGATGTGAAAAAGATATGGACATTGCCAAAACA-AAAGTCTCAAAACATGCTTTGAATAGAGGTATCATG----CTGGAACAAAGAAAAATTCTGACCAGAGACAAATCTTACAGAATTTGTAAATTCTGCCATG-----TTGTCTAAAACCCCCAAATCTCAATCTGTTTAGCTTTGCCGTACTTTTCTAAATAAGCATGTTCTACCTTTCC-TAAACACTTCC-ATGTGGCCTTTAAATGATTTCCAGGTGCTTTGTCATCAT-ATCAAACACACATTAGG--agtggttctcaacctt-gtctata----------------------------atttgtaattacctagggaacgtaaa-t-cattttgaggacagagtttgccctcaaaatgtctgatttataataactggtctgaaattcagcct-gccacggggcgtttcaga-----------gtgctgaggcttaaatgagccagggtgagacctactTagcagaacccggtttccagttctg i otoGar3.GL873537 I 2 C 0 s canFam3.chr9 21373074 562 + 61074082 ttgattgcgcatcttattcacaaaatttcttgttgaatggcttctaaaaaatcaaatccatccttaaaagac-aaaggtttgctatcaacaaactggatattaaaaagatacagacattgccaaaacacaaaactcccaaacatgctttgaacagagaggccatca---ctagaacaagggaagattctggcagggggcaaagctttttggatctgtaaattttgttatg---attttttctcaaaatAGAAATCTCAATCCTTGTAGCTGAACCACAATTTTGTAAATAAATATATTCTACATCCCCTTAAATACTTCC-ATGTGGCTCTTAAATTGTTTCCAGATACTCTGTCATCATCATCATACATG----AAGGcagttgttctccacgtt-ggtggta----------------------------ctttggaatcacctggggaacttaaa-aaaa-gctgaagctggagtttgccctttgagagtctgatt-----caactggtctgggatgcagcctggccattaggagttttaga-atctctacaggtggt-----tctaatgagccaggttgtgacccactTGCCaaagctagggttctagttct- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 351577 588 - 852752 ttgattgtccaccgtaatcacaaggtttctcat--gacttcttccaaaaa--ccaaaccatccccagagggc-aaagatttgcaaccaacaaactggatattcaaagggtgcaggtattgccaaagca-ggaggctccaaacatgatcggagcagaggctacatcactgctggaataTGGGGAAATTTGGGACTGGGACAAAGATGTTTGGGTCTCTATGTTCTGCCTTGTGTTTTTTTTTAAAC---AAAAACCTCAGTCATTGTATTCTTACTTTAATTTTGTAAATGAATGCGTTCTTCGTCTGCTTAAACACATCCAATGTGGCTTTTTAATTGCTTCCAAGTGCTCTGCTATCATCATCA-ACACACACCA-GACAGTGTTTCTCAATTTCGGGCTTTGGTTTATTTTTTTCTTTTGTtttgttggactttggaattacctgggaaccttgga-aaactgttgaggtccaag-----cctcagg--gtctgatt-----taattggtttggaattcagcctggtcgcccggctttttaaaaaactcccaagatgat-----cccaatgagtcaggttggaagccCTTTACCAGTacctgggctctagtccta i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1561976.000000 s hg38.chr17_GL383564v2_alt 41763 207 + 133151 acatttacgaccttaatagctctgtgtctttggataagacatgtggcttctcctagctttagttgccccaaaggtagagtggagataaccgtgtcttctctacttactttataaacttgccaaaggaagcatggaaaac--tgtttatggaaacactttgtagaccacata-tttttattaggattattgacaattttta----ttattGCCGG s panTro5.chr17 16235659 207 + 83181570 acatttatgaccttaatagctctgtgtctttggataagtcatgtggcttctcctagctttagttgccccaaaggtagagtggagataaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaag--tgtttatggaaacactttgtagacCACGta-tttttattaggattattgacaattttta----ttattGCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143126 207 + 83442489 acatttatgaccttaatagctctgtgtctttggataagtcatgtggcttctcctagctttagttgccccaaaggtagagtggagataaccatgtcttccctacttactttataaacttgccaaaggaagcatggaaaag--tgtttatggaaacactttgtagacCACGta-tttttattaggattattgacaattttta----ttattGCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978151 206 + 4267968 acatttacgaccttaatagctctgtgtctttggataagacatgtggcttctcctagctttagttgccccagaggtagagtggagataaccatgtcttctcta-ttactttataaacttgccaaaggaagcatggaaagc--tgtttatggaaacactttgtagaccacata-tttttattaggattattgacaattttta----ttattGCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1958299 207 - 2193130 acatttacaaccttaatagctctgtgtctttggataagacatgtggcttctcctagctttagttgccccaaaggtagagtggagataaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaat--tgtttatggaaacactttgtagaccacata-tttttattaggattattgataattttta----ttattGCTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30030804 207 - 77216781 acattgacacccttaatagctctgtgtcttcggataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggaggtaaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaac--tgtctatggaaacactttgtagaccacata-tttttattaggattattgacaattttta----ttattGCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27943404 207 - 80997621 acattgacacccttaatagctctgtgtcttcggataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggaggtaaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaac--tgtctatggaaacactttgtagacCACAta-tttttattaggattattgacaattttta----ttattGCTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1999699 207 + 10377808 ccattgacacccttaatagctctgtgtcttcggataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggaggtaaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaac--tgtctatggaaacactttgtagaccacata-tttttattaggattattgacaattttta----ttattGCTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887103 207 - 8458610 acattgacacccttaatagctctgtgtcttcagataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggaggtaaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaac--tgtctatggaaacactttgtagaccacata-tttttattaggattattgacaattttta----ttattGCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64842831 207 + 75148670 acattgacacccttaatagctctgtgtcttcggataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggagataaccatgtcttctctacttactttataaacttgccaaaggaagcatggaaaac--tgtttatggaaacactttgtagacCACATA-CTTTTATTAGGATTATTGACAATTTTTA----TTATTGCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2066279 207 + 4244037 acattgacacccttaatagctctgtgtcttcggataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggaggtaaccatgtcttctctacttactttataaacttgccaaaggaagcgtggaaaac--tgtctatggaaacactttgtagacCACAta-tttttattaggattattgacaattttta----ttattGCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094169 207 + 4569836 acattgacacccttaatagctctgtgtcttcagataagacatgtggcttctcctagctgtagtttccccaaaggcaaagtggagataacaatgtcttctctatttactttataaacttgccaaaggaagcatggaaaac--tgtttatggaaacactttgtagaccacata-tttttattaggattattgacaattttta----ttattGCTGG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22754815 207 + 28711273 --acttactctcttgacatttgtgtgtctttggacaagactcatggcttctctgagctttattttcctcacgggtagagaggaggtaaccatctcttctctactttatttatatacttgtcaaaaggaatatagacaattgtgtttatgaaaacactttgtaaacAAGATA-CTTTTATTAAAGTTATTAATAATTTTGG----TTGTTGCTGG i otoGar3.GL873537 C 0 I 11486 s canFam3.chr9 21373636 197 + 61074082 -cacttatcctctcatcacctctgtgtccttggacaagacatgtagcttctctgagcctcaatttccccaa------agtggaggtaac--tctcttctctacctgctttatacacttaccaagaggatcagggaagactgtgtttatggaaacactttgcaaacCAGATATTTTTTATCAGGACTATT----ATTTTGA----TTGTTGATGA i canFam3.chr9 C 0 I 7 s dasNov3.JH570468 352165 202 - 852752 --acttac--ctttaccagctctatgtccttggacaagccccttgccttctctgagcta----ttccccaaaggtaaaatggagatagcaatctcttctctcacta-tttatacacatgccaagaggatcctataaaat--tgtttatgggaaaactttgtaaaTGAGGAA-TTTTTATTAGGATTATTAATCATTTTGATTATTTATTACTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35872404 776 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1385580.000000 s hg38.chr17_GL383564v2_alt 41970 222 + 133151 ----------TATAGCTAAGTTTCTTAAG-GTTAAAAAAGTATCATCATTTTCTTTTTCTTTTTGGATTTAGGTTCAACAGCAGGATTTGCATATTGTCGTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTGTGCACCAGAAGTGTATGGTCTGCTCGGCA-TATTTGATACTTTTTGGCCCCAGGCTCCTCTTGTGATAGGTGGGCGGGCAGCTCCTTTT s panTro5.chr17 16235866 222 + 83181570 ----------TATAGCTAAGTTTCTTAAG-GTTAAAAAAGTATCATCATTTTCTTTTTCTTTTTGGATTTAGGTTCAACAGCAGGATTTGCATATTGTCGTATGGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTGTGCACCAGAAGTGTATGGTCTGCTCCGCG-TATTTGATACTTTTTGGCCCCAGGCTCCTCTTGTGATAGGTGGGCGGGCAGCTCCTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143333 222 + 83442489 ----------TATAGCTAAGTTTCTTAAG-GTTAAAAAAGTATCATCATTTTCTTTTTCTTTTTGGATTTAGGTTCAACAGCAGGATTTGCATATTGTCGTATGGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTGTGCACCAGAAGTGTATGGTCTGCTCCGCG-TATTTGATACTTTTTGGCCCCAGGCTCCTCTTGTGATAGGTGGGCGGGCAGCTCCTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978357 222 + 4267968 ----------TACAGCTAAGCTTCTTAAG-GTTAAAAAAGTATCATCATTTTCTTTTTCTTTTTGGATTTAGGTTCAACAGCAGGATTTGCATATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTGTGCACCAGAAGTGTGCGGTCTGCTCGGCA-CATTTGATACTTTTTGGCCCCAGGCTCCTCTCGTGATAGGTGGGAGGGCAGCTCCTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1958506 222 - 2193130 ----------TATAGCTAAGCTTCTTAAG-GGTAAAAAAGTATCATCATTTTCTTTTTCTTTCTGGAATTAAGTTCAACAGCAGGATTTGCACATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTGTGCACCAGAAGTGTATGGTCTGCTCTGCA-TATTTGATACTTTTTGGCCCTAGGCTCCTCTTGTGATGGGTGGGAGGGCAGCTGCTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031011 224 - 77216781 ----------TATAGCTAAACTTCTTAAGAGTAAAAAAAGTATCCTCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTTGATTCCTTTTGGCCCTAGGCCCTTCTTGTGATGGGTGGGAGGGCAGCTCCTTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27943611 224 - 80997621 ----------TATAGCTAAACTTCTTAAGAGTAAAAAAAGTATCCTCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTTGATTCCTTTTGGCCCTAGGCCCTTCTTGTGATGGGTGGGAGGGCAGCTCCTTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 1999906 224 + 10377808 ----------TATAGCTAAACTTCTTAAGAGTAAAAAAAGTATCATCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTTGATTCCTTTTGGCCCTAGGCCCTTCTTGTGATGGGTGGGAGGGCAGCTCCTTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887310 224 - 8458610 ----------TATAGCTAAACTTCTTAAGAGTAAAAAAAGTATCATCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTGGATTCCTTTTGGCCCTAGGCCCTTCTTGTGATGGGTGGGAGGGCAGCTCCTTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843038 224 + 75148670 ----------TATAGCTAAACTTCTTAAGAGTAAAAAAAGTATCATCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTTGATTCCTTTTGGCCCTAGGCCCTTGTTGTGATGGGTGGGAGGGCAGCTCCTTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2066486 224 + 4244037 ----------TATAGCTAAACTTCTTAAGAGTAAAAAAAGTATCATCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTTGATTCCTTTTGGCCCTAGGCCCTTCTTGTGATGGGTGGGAGGGCAGCTCCTTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094376 224 + 4569836 ----------TATAGCTAAACTTCTTAAGAATAAAAAAAGTATAATCGTTTTCTTTTTCTTTTTGGCTTTAGGTTCAACAGCAGGATTTGCTTATTGTCCTATTGTCTTTCACACCATAAATTCTTTCTTCTTTAAACCC-------AGCTCTGCACCAGGAGTGTATGGTCAGCTCAGCATTATTTGATTCCTTTTGACTCCAGGCCCTTCTCGTGATGGGTGGGAGGGCAGCTCCTTTT i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21373840 216 + 61074082 ----------TATAGATAAGCTTCTTAAAAGT-AGAAAAGCATAATCATTTTTGTTACT------GTTTCATGCCCAACAGTAGAATTTGTATACTGTCCTGTTGTCTCTCACACCAC---TGCTTCTTTCTTTAAATCCTCCACTTAGCTCTACACCTGGAGTATATGCTCTACTCAGTATTATTGGATACTCTTTGACTCCAGGCCCATCTTCTGATGGGGCCCTAGGC----CCTTC- i canFam3.chr9 I 7 C 0 s dasNov3.JH570468 352367 230 - 852752 TCCAACGCATAGTAGCTAAGCTTCTTAAG-GGAAAAAAGGTATGCATATATATATTTGTTT----GTTTCATGCCTGACAGTGGAATTTGTATCCTGTCCTATTGTTTTACTCACTGCGACTTCTTTCCACTTTAAATCCCCCACTGAACTCCA-ACCAGAAGTGTATGTTCTACTCAGCACTATTGGAAACTCTTTAGCCCCAGCCAGTTTTAG-----GCTAGGGGCTCGGATCCCTTC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35872404 776 - 65901067 I e otoGar3.GL873537 22755022 11486 + 28711273 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=684021.000000 s hg38.chr17_GL383564v2_alt 42192 86 + 133151 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAGCTGTCTTGGTCTAAACTCTTAG s panTro5.chr17 16236088 86 + 83181570 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCCTTGGTGACCTGTTTTATTGCCTCCTGAGCTGTCTTGGTCTAAACTCTTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143555 86 + 83442489 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCCTTGGTGACCTGTTTTATTGCCTCCTGAGCTGTCTTGGTCTAAACTCTTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978579 86 + 4267968 TCAGTTGTC----TGGGCTATTTGTCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAGCTGTCTTGGTCTAAACTCTTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1958728 90 - 2193130 TCAGTTGTCTGTTTGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAGCTGTCTTGGTCTAAACTCTTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031235 86 - 77216781 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAACTATCTTGGTCTAAACTCTTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27943835 86 - 80997621 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAACTATCTTGGTCTAAACTCTTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000130 86 + 10377808 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAACTATCTTGGTCTAAACTCTTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887534 86 - 8458610 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAACTATCTTGGTCTAAACTCTTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843262 86 + 75148670 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTACCTCCTGAACTATCTTGGTCTAAACTCTTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2066710 86 + 4244037 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGCTCTTTGGTGACCTGTTTTATTGCCTCCTGAACTATCTTGGTCTAAACTCTTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094600 86 + 4569836 TCAGTTGTC----TGGGCTATTTGGCATGTCTGATGTTCTTTGGTGACCTGTTTTATTGCCTCCTGAACTATCTTGGTTTAAACTCTTAG i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35873180 86 - 65901067 TCAGTTGGC----TGGGCTATTTGGCATGTCTATCGGTCTTTGGTGACCTATTTTACGGGTTCCTGGGCTGTCCTGGTCTAAACTCTTAG i micMur3.chr16 I 776 I 197 s canFam3.chr9 21374056 72 + 61074082 -----------------TCAGTTGGTACATCCAGTGCTCTTTTGTGACCTATTTAATTGCCTCTTG-GCTGTCTTGGTCTGAACTCTTAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 352597 78 - 852752 TCAGTTGGT----TGGGTTTTTCAGCTCATCCAGTGTTCCTTGGCGACCTGTT--------TCCTGGGCTATCCTGGACTAAACTCTTAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e otoGar3.GL873537 22755022 11486 + 28711273 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=653760.000000 s hg38.chr17_GL383564v2_alt 42278 98 + 133151 CCGGCAGTATCTACCACTCTCCGACCTTTGACTTTTCC-CTAGGCTTATCTCCTGGATActtttgctgtttcttttcctttctgtttcCC-TGCAAATTT s panTro5.chr17 16236174 98 + 83181570 CCGGCAGGATCTACCACTCTCCGACCTTTGACTTTTCC-CTAGGCTTATCTCCTGGATActtttgctgtttcttttcctttctgtttcCC-TGCAAATTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143641 98 + 83442489 CCGGCAGGATCTACCATTCTCCGACCTTTGACTTTTCC-CTAGGCTTATCTCCTGGATActtttgctgtttcttttcctttctgtttcCC-TGCAAATTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978665 98 + 4267968 CCGGCAGGATCTACCACTCTCCGACCTTTGACTTTTCC-CTAGGCTTATCTCCTGGATACTTTTGCTGTTTCTTTTCCTTTCAGTTTCCC-TGCAAATTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1958818 98 - 2193130 CCAGCAGGATATACCACTCTCTGACCTTTGACTTTTCC-CTATGCTTATCTCCTGGATATTTTTGCTGTTTCTTTTCTTTTCTGTTTCCC-TGCAAATTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031321 98 - 77216781 CTGGCAGGATATACCACTCTCCGACCTTTGACTTTTCC-CTATGCTTATCGCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-TGCAAATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27943921 98 - 80997621 CTGGCAGGATATACCACTCTCCAACCTTTGACTTTTCC-CTATGCTTATCGCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-TGCAAATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000216 98 + 10377808 CTGGCAGGATATACCACTCTCCGACCTTTGACTTTTCC-CTATGCTTATCGCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-TGCAAATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887620 98 - 8458610 CTGGCAGGATATACCACTCTCCGACCTTTGACTTTTCC-CTATGCTTATCGCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-TGCAAATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843348 98 + 75148670 CTGGCAGGATACACCACTCTCCGACCTTTGACTTTTCC-CTATGCTTATCTCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-GGCAAATTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2066796 98 + 4244037 CTGGCAGGATATACCACTCTCCAACCTTTGACTTTTCC-CTATGCTCATCGCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-TGCAAATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094686 98 + 4569836 CTGGCAGGATATACCACTCTCCGACCTTTGACTTTTCC-CTATGCTTATCTCCTGGATATTTTTGCTGTTTCTTTTCCTTTCTGTTTCCC-TGCAAATTT i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21374128 94 + 61074082 CCCACTGGCAATATCATTCTCAGATACTTAACCTATCC-TTAAGCTTAAGTCCTGAATATTTTTGCTGATTCTTTCCCT----GTTGCCT-TGAAAATTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 352675 100 - 852752 CAGACCGTGTGTGCCACCCTCAGGCATTTGGTTTTTCCTCCTGGATCAGCTACTAAATATTGTTGCTGATCCCTTTCCTTCCTGTTTCCCTTGCGTATTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873266 197 - 65901067 I e otoGar3.GL873537 22755022 11486 + 28711273 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=389814.000000 s hg38.chr17_GL383564v2_alt 42376 58 + 133151 TATGTTTACTTTGGGATGGAGCTAAGGCAC----TTTTTTTTCCAT----CCTTACATCTGGAGTT s panTro5.chr17 16236272 59 + 83181570 TATGTTTACTTTGGGATGGAGCTAAGGCAC---TTTTTTTTTCCAT----CCTTACATCTAGAGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143739 59 + 83442489 TATGTTTACTTTGGGATGGAGCTAAGGCAC---TTTTTTTTTCCAT----CCTTACATCTGGAGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978763 59 + 4267968 TATGTTTACTTTGGGATGGAGCTAAGGCAC---TTTTTTTTTCCGT----CCTTACATCTGGAGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1958916 58 - 2193130 TATGTTTACTATGGGATAGAGCTAAGGCAC----TTTTTTTTCCAT----CCTTACATCTGGAGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031419 62 - 77216781 TATGTTTACTTTGGGATAGAGCTAAGGCACTTTTTTTTTTTTTCAT----CCTTACATCTGGAGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944019 62 - 80997621 TATGTTTACTTTGGGATAGAGCTAAGGCACTTTTTTTTTTTTTCAT----CCTTACATCTGGAGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000314 60 + 10377808 TCTGTTTACTTTGGGATAGAGCTAAGGCAC--TTTTTTTTTTTCAT----CCTTACATCTGGAGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887718 59 - 8458610 TATGTTTACTTTGGGATAGAGCTAAGGCAC---TTTTTTTTTTCAT----CCTTACATCTGGAGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843446 63 + 75148670 TATGTTTACTTTGGGATAGAGTTAAGACAC---TTTTTTTTTTTCTTCGCCCTTACATCTGGAGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2066894 59 + 4244037 TATGTTTACTTTGGGATAGAGCTAAGGCAC---TTTTTTTTTTAAT----CCTTACATCTGGAGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094784 60 + 4569836 TATGTTTACTTTGGGATAGAGCAAAGGCAC--TTTTTTTTTTCCAT----CCTTACATCTGGAGTT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22766508 56 + 28711273 TGTGTTTGCTATCGTAGAGAGCTGGTGCAC------TTGTTTTCAT----CCTGACATCTAGAGTC i otoGar3.GL873537 I 11486 C 0 s canFam3.chr9 21374222 54 + 61074082 -GTATATGCTATGGG-TACAGCTAAGAAAC------TTTTTTGCAA----TCTTAAATCTGGGGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 352775 57 - 852752 TATATTTGCTAAGGGAT-GAGCTCAGGCAT----CCTATTTACCAT----CCTTACATCTGGGGCC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873266 197 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=400089.000000 s hg38.chr17_GL383564v2_alt 42434 48 + 133151 AAAGCCATCATTTGAGTTTTTTGAGGCCTGAGGCTGCTGTCAGCATCT s panTro5.chr17 16236331 48 + 83181570 AAAGCCATCATTTGAGTTTTTTGAGGCCTGAGGCTGCTGCCAGGATCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143798 48 + 83442489 AAAGCCATCATTTGAGTTTTTTGAGGCCTGAGGCTGCTGTCAGGATCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978822 48 + 4267968 AAAGCCATCATTTGAGTTTTTTGAGGCCTGAGGCTGCTGTCAGCATCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1958974 48 - 2193130 AAAGCCATCATTTGAGTTTTTTGAGGCCTGAGGCTGCTGCCAGCATCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031481 48 - 77216781 AAAGCCATCATATGAGTTTTTTGAGGCCTAAGGCTGCTGTTAGCATCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944081 48 - 80997621 AAAGCCATCATATGAGTTTTTTGAGGCCTAAGGCTGCTGTTAGCATCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000374 48 + 10377808 AAAGCCATCATATGAGTTTTTTGAGGCCTAAGGCTGCTGTTAGCATCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887777 48 - 8458610 AAAGCCATCATATGAGTTTTTTGAGGCCTGAGGCTGCTGTTAGCATCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843509 48 + 75148670 AAAGCCATCATATGAGTTTTTTGAGGCCTGAGGCTGCTGTTGGCATCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2066953 48 + 4244037 AAAGCCAACATATGAGTTTTTTGAGGCCTAAGGCTGCTGTTAGCATCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094844 48 + 4569836 AAAGCCATCATATGAGTTTTTTGAGGCCTGAGGCTGCTGTTAGCATCT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35873463 48 - 65901067 AAAGCTATCATTTGAGTTCCCTGTGGCCTGAGGTTGCTGTCGGCATCT i micMur3.chr16 I 197 I 108 s otoGar3.GL873537 22766564 46 + 28711273 AAAGCCACCACTTGAGTT-CTTGCAGCCTGAGGCTGCTATT-GTATCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21374276 48 + 61074082 AAAGTCATTGTTTGAGTTCCTTGAGGCCTGAGGCTGCTGTTGGTATCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 352832 41 - 852752 AAAGTCATTGT-TGAGTCCTTTGAGTTCGGAGGCTATTGT----AT-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=547265.000000 s hg38.chr17_GL383564v2_alt 42482 78 + 133151 GCAGGAAGAACAGCA-GGCTGTCCAGGAGCGCTCAGCATTTTCCTCTATATAAGCACATCCCGTTACTTCCAGGAGCCA s panTro5.chr17 16236379 78 + 83181570 GCAGGAAGAACAGCA-GGCTGTCCAGGAGTGCTCAGCATTTTCCTCTATATAAGCATATCCTGTTACTTCCAGGAGCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143846 78 + 83442489 GCAGGAAGAACAGCA-GGCTGTCCAGGAGTGCTCAGCATTTTCCTCTATATAAGCATATCCTGTTACTTCCAGGAGCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978870 78 + 4267968 GCAGGAAGAACAGCA-GGCTGTCCAGGAGCACTCAGCATTTTCCTCTATACAAGCACATCCTGTTACTTCCAGGAGCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959022 78 - 2193130 GCAGGAAGAACAGCA-GGCTGTCCAGGAGAGCTCAGCATTTTCCTCTATATAAGCACATCCTGTTACTTCCAGGAGCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031529 78 - 77216781 GCAGGCAGAACAGCA-GGCTCTCCAGGAGTGCTCAGCATTTTCCTCTATGCAAGCACATCCCATTACTTCCAGGAGCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944129 78 - 80997621 GCAGGCAGAACAGCA-GGCTATCCAGGAGTGCTCAGCATTTTCCTCTATGCAAGCACATCCCATTACTTCCAGGAGCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000422 78 + 10377808 GCAGGCAGAACAGCA-CGCTATCCAGGAGTGCTCAGCATTTTCCTCTATGCAAGCACATCCCATTACTTCCAGGAGCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887825 78 - 8458610 GCAGGCAGAACAGCA-GGCTATCCAGGAGTGCTCAGCATTTTCCTCTATATAAGCACATCCCATTACTTCCAGGAGCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843557 78 + 75148670 ACAGGCAGAACAGCA-GGCTGTCCAGGAGTGCTCAGCATTTTCCTCTATATAAGCACATCCCATTACTTCCAGGAGCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067001 78 + 4244037 GCAGGCAGAACAGCA-GGCTATCCAGGAGTGCTCAGCATTTTCCTCTATATAAGCACATCCCATTACTTCCAGGAGCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094892 78 + 4569836 GCAGGCATAACAGCA-GGCTGTCCAGGAGTGCTCAGCATTTTCCTCTATATAAGCACATCCCATTACTTTCAGGAGCCA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22766610 78 + 28711273 ATAAGAAGAGTGGCAGGGTTATGTAGGAGTGGCCAATGTTTCCTTCTGCA-AAGCGCATCCCACCACTTCCAGGAGTCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21374324 76 + 61074082 ACAGGAAGAGCAG---GACTGTCCAGGAATGTGCAGCATTTTTTTCTGTAAAAGCCCATCTCATTACTTCCAGGAGGCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 352873 48 - 852752 ------------GCA-GG-----------------ACTTCTTCCTCTCCAGAGGCCCATCCCCTTA-TTCCTGGAATCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=132684.000000 s hg38.chr17_GL383564v2_alt 42560 21 + 133151 AGCCATGCCATGATAAGCTTG s panTro5.chr17 16236457 21 + 83181570 AGCCATGCCATGATAAGCTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143924 21 + 83442489 AGCCATGCCATGATAAGCTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978948 21 + 4267968 AGCCATGCCATGATAAGCTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959100 21 - 2193130 GGCCATGCCATGATAAGCTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031607 21 - 77216781 AGCCATGCCATGATAAGTTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944207 21 - 80997621 AGCCATGCCATGATAAGTTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000500 21 + 10377808 AGCCATGCCATGATAAGTTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887903 21 - 8458610 AGCCATGCCATGATAAGTTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843635 21 + 75148670 AGCCATGCCATGATAAGCTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067079 21 + 4244037 AGCCATGCCATGATAAGTTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094970 21 + 4569836 AGCCACGCCATGATAAGCTTG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22766688 18 + 28711273 ---TACTTAATAAGATGCTTC i otoGar3.GL873537 C 0 T 11115 s dasNov3.JH570468 352921 18 - 852752 ---CTTCTCATGAGGAGCTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e canFam3.chr9 21374400 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=419641.000000 s hg38.chr17_GL383564v2_alt 42581 89 + 133151 TGGGATTTGTTACtttt---------tttt---------------tttggagatggagtctcgctctgtcaccaggttggagtgcagtggtgcgatctcagctcactgcaacc s panTro5.chr17 16236478 89 + 83181570 TGGGATTTGTTACtttt---------tttt---------------tttggagatggagtctcgctctgtcaccaggttggagtacagtggcgccatctcagctcactgcaacc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16143945 88 + 83442489 TGGGATTTG-TACtttt---------tttt---------------tttggagatggagtctcgctctgtcaccaggttggagtacagtggcgccatctcagctcactgcaacc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3978969 104 + 4267968 TGGGATTTGTTACtttt---------ttttttttttttttttttgtttggagatggagtctcgctctgtcaccaggttggagtgcagtggtgcgatctcagctcactgcaacc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959121 100 - 2193130 TGGGATTTGTTACtttt---------ttttttttttttttt----tttcgagatggagtcttgctctgtcaccaggctggagtgcagtggctcgatctcaactcactgcaacc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031628 96 - 77216781 TGGGATTTATTACTCttt--------tttttttttt---------ttttgagatggagtctcactctgtcatcaggttggagtgcaatggtgcaatctcggctcactacaacc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944228 99 - 80997621 TGGGATTTATTACTCttt-----ttgtttttttttt---------ttttgagatggagtctcactctgtcatcaggttggagtgcaatggtgcaatctcggctcactacaacc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000521 99 + 10377808 TGGGATTTATTACTCttt-----ttttttttttttt---------ttttgagatggagtctcactctgtcatcaggttggagtgcaatggtgcaatctcggctcactacaacc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1887924 95 - 8458610 TGGGATTTATTACTCtt---------tttttttttt---------ttttgagatggagtctcactctgtcaccaggttggagtgcaatggtgcaatctcggctcactacaacc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843656 92 + 75148670 TGGGAtttattcc---t---------tttttttttt---------ttttgagatggagtctcactctgtcaccaggttggagtgcaatggtgcaatcttggctcactacaacc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067100 95 + 4244037 TGGGATTTATTACtttt---------tttttttttt---------ttttgagatggagtctcactctgtcaccaggttggagtgcaatggtgcaatctcggctcactacaacc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2094991 104 + 4569836 TGAGATTTATTACCtttttttttttttttttttttt---------ttttgagatggagtctcactctattaccaggttggagtgcaatggtgcaatctcggctcactacaacc i colAng1.NW_012122154v1 C 0 C 0 s dasNov3.JH570468 352939 21 - 852752 -----------------------------------------------------TGGAAT-------TGTCA--------------------------------CACTTTAACC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e canFam3.chr9 21374400 0 + 61074082 C e otoGar3.GL873537 22766706 11115 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=375389.000000 s hg38.chr17_GL383564v2_alt 42670 68 + 133151 tctgcctcccaggttcaagcaattctcttccctcagcctcctaggtagctggaactacaggcgcccac s panTro5.chr17 16236567 68 + 83181570 tctgcgtcccaggttcaagcaattctcttccctcagcctcccaggtagcagggactacaggtgcccac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144033 68 + 83442489 tctgcgtcccaggttcaagcaattctcttccctcagcctcccaggtagcagggactacaggtgcccac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979073 68 + 4267968 tctgcctcccaggttcaagcaattctcttccctcagcctcccaggtagctggaactacaggcacccac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959221 68 - 2193130 tctgcctcccaggttcaagcaattctcttgcctcagcttcccaggtagctgggactacaggtgcccac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031724 68 - 77216781 tctgcctcccaggttcaagcaattctcttgcttcagcctcccgaatagctgggactacaggcgcctgc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944327 68 - 80997621 tctgcctcccaggttcaagcaattctcttgcttcagcctcccgaatagctgggactacaggcgcctgc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000620 68 + 10377808 tctgcctcccaggttcaagcaattctcttgcttcagcctcccgaacagctgggactacaggcgcctgc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888019 68 - 8458610 tctgcctcccaggttcaagcaattctcttgcctcagcctcccgaatagctgggactacaggcgcctgc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843748 68 + 75148670 tctgcctcccaggttcaagcaattctcttgcctcagcctcccaaatagctgggactacaggcgcctgc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067195 68 + 4244037 tctgcctcccaggttcaagcaattctcttgcctcagcctcccgaatagctgggactacaggtgcctgc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095095 68 + 4569836 tctgcctcccaggttcaagcaattctcttgcctcagcctcccgaatagctaggactacaggcacctgc i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e dasNov3.JH570468 352960 0 - 852752 C e canFam3.chr9 21374400 0 + 61074082 C e otoGar3.GL873537 22766706 11115 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=49641.000000 s hg38.chr17_GL383564v2_alt 42738 9 + 133151 caccacacc s panTro5.chr17 16236635 9 + 83181570 caccacacc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144101 9 + 83442489 caccacacc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979141 9 + 4267968 caccacacc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959289 9 - 2193130 caccatgcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031792 9 - 77216781 cgctacacc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944395 9 - 80997621 cgctacacc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000688 9 + 10377808 cgctacacc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888087 9 - 8458610 cactacacc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843816 9 + 75148670 cgctacgcc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067263 9 + 4244037 cgctacacc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095163 9 + 4569836 cgctacgcc i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21374400 9 + 61074082 CACCTCACC i canFam3.chr9 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e dasNov3.JH570468 352960 0 - 852752 C e otoGar3.GL873537 22766706 11115 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=629894.000000 s hg38.chr17_GL383564v2_alt 42747 112 + 133151 cagctaattttttgtattttagtagagacggggtttcaccatgttggccaggatggtctccatctcttgacctcgtgatctgcctgcctcggcctcccaaagtgctgggatt s panTro5.chr17 16236644 112 + 83181570 cagctaattttttatattttagtagagatggggtttcaccatgttggccaggatggtctccatctcttgacctcgtgatctgcctgcctcggcctcccaaagtgctgggatt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144110 112 + 83442489 cagctaattttttatattttagtagagatggggtttcaccatgttggccaggatggtctccatctcttgacctcgtgatctgcctgcctcggcctcccaaagtgctgggatt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979150 112 + 4267968 cagctaattttttgtattttagtagagacggggtttcaccatgttgcccaggaaggtctccatctcttgacctcgtgatctgcctgccttggcctcccaaagtgctgggatt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959298 112 - 2193130 cagctaattttttgtattttagtagagacagggtttcaccatgttggccaggatggcgtccatctattgacctcctgatctgcctgcctcggccttccaaagtgctgggatt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031801 111 - 77216781 cagctaa-tttttgtattttagtagagacggggtttcaccatgttggccaggatgatctccatctcttgacctcgtgatctgcctgcctcgacctcccaaagtgatgggatt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944404 111 - 80997621 cagctaa-tttttgtattttagtagagacggggtttcaccacgttggccaggatgatctccatctcttgacctcgtgatctgcctgcctcgacctcccaaagtgatgggatt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000697 111 + 10377808 cagctaa-tttttgtattttagtagagacggggtttcaccatgttggccaggatgatctccatctcttgacctcgtgatctgcctgcttcgacctcccaaagtgatgggatt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888096 112 - 8458610 cagctaattttttgtattttagtagagacggggtttcaccatgttggccaggataatctccatctcttgacctcgtgatctgcctgcctcaacctcccaaagtgatgggatt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843825 112 + 75148670 cagctaattttttgtattttagtagagatggggtttcaccctgttggccaggatggtctccatctcttgacctcatgatctccctgcctcgacctcccaaagtgctgtgatt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067272 112 + 4244037 cagctaattttttgtattttagtagagacggggtttcaccatgttggccaggatgatctccatctcttgacctcgtgatctgcctgcctcgacctcccaaagtgatgggatt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095172 112 + 4569836 cagctaattttttgtattttagtggagacggggtttcaccatgttggccaggatgatctccatctcttgacctcatgatctgcctgcttcgatctcccaaagtgctaggatt i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e dasNov3.JH570468 352960 0 - 852752 C e canFam3.chr9 21374409 0 + 61074082 C e otoGar3.GL873537 22766706 11115 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=143585.000000 s hg38.chr17_GL383564v2_alt 42859 25 + 133151 acaggcgtgagccactgcgcccagA s panTro5.chr17 16236756 25 + 83181570 acaggcgtgagccactgcgcccagA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144222 25 + 83442489 acaggcgtgagccactgcgcccagA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979262 25 + 4267968 acaggtgtgagccactgcgcccagA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959410 25 - 2193130 acaggcgtgagccactgcgcccagA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031912 25 - 77216781 acaggcgtgagccactgtgtccagA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944515 25 - 80997621 acaggcgtgagccactgtgtccagA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000808 25 + 10377808 acaggcgtgagccactgtgtccagA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888208 25 - 8458610 acaggcgtgagccactgtgtccagA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843937 25 + 75148670 acaggtgtgagccactgtgtccagA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067384 25 + 4244037 acaggcgtgagccactgtgtccagA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095284 25 + 4569836 acaggcgtgagccactgtgtccagA i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21374409 9 + 61074082 ACAAGCTTG---------------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e dasNov3.JH570468 352960 0 - 852752 C e otoGar3.GL873537 22766706 11115 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=33878.000000 s hg38.chr17_GL383564v2_alt 42884 4 + 133151 TGGG s panTro5.chr17 16236781 4 + 83181570 TGGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144247 4 + 83442489 TGGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979287 4 + 4267968 TGGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959435 4 - 2193130 TGGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031937 4 - 77216781 TGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944540 4 - 80997621 TGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000833 4 + 10377808 TGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888233 4 - 8458610 TGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843962 4 + 75148670 TGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067409 4 + 4244037 TGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095309 4 + 4569836 TGGG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22755591 4 + 28711273 TAGG i otoGar3.GL873537 T 11115 C 0 s canFam3.chr9 21374418 4 + 61074082 TGGG i canFam3.chr9 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2952870 7481 + 8555354 I e micMur3.chr16 35873511 108 - 65901067 I e dasNov3.JH570468 352960 0 - 852752 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=173256.000000 s hg38.chr17_GL383564v2_alt 42888 19 + 133151 ATTTGTTACTTTTTAAACT s panTro5.chr17 16236785 19 + 83181570 ATTTGTTACTTTTTAAACT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144251 19 + 83442489 ATTTGTTACTTTTTAAACT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979291 19 + 4267968 ATTTGTTACTTTTTAAACT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959439 19 - 2193130 ATTTGTTACTTTTTAAACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031941 19 - 77216781 ATTTGTTACTTTTTAAACT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944544 19 - 80997621 ATTTGTTACTTTTTAAACT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000837 19 + 10377808 ATTTGTTACTTTTTAAACT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888237 19 - 8458610 ATTTGTTACTTTTTAAACT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843966 19 + 75148670 ATTTGTTACTTTTTAAACT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067413 19 + 4244037 ATTTGTTACTTTTTAAACT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095313 19 + 4569836 ATTTGTTACTTTTTAAACT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35873619 18 - 65901067 ATTTGTTACTTTTT-AACT i micMur3.chr16 I 108 C 0 s proCoq1.NW_012135969v1 2960351 18 + 8555354 ATTTGTTACTTTTT-AACT i proCoq1.NW_012135969v1 I 7481 C 0 s otoGar3.GL873537 22755595 18 + 28711273 ACATGTTAATTTTT-AACT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21374422 18 + 61074082 ATTTGTCACTTTTT-AACC i canFam3.chr9 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e dasNov3.JH570468 352960 0 - 852752 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=5637568.000000 s hg38.chr17_GL383564v2_alt 42907 604 + 133151 CCCAGTTTGCTGAGGAGTAAAGTGATGTGCAGGAAGCCTAGGTGTGT-CTTGTCTG---GTGCTCATAGCTGGTATTGGAATCCATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATCTCTCTAACTCACAATAA-ATA-TGATGGGTCAGGCCGACTGAAGCctgcttacttgtgtc-attttgaatgagttaaatttactcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaacctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgattgattgatattcattTCCTTACTACCTTACTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAG------------------TTCTTTGATTG-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGATTAAAA-CTCATGGTTAGAAGGGTAGTCTTTCTTCTAAGTTCTAAATCA-CTTAGGTCATGTGATTATGCATTTTAATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATATTCAGAAAAGACAATCTAGTTTC s panTro5.chr17 16236804 604 + 83181570 CCCAGTTTGCTGAGGAGTAAAGCAATGTGCAGGAAGCCTAGGTGTGT-CTTGTCTG---GTGCTCATAGCTGGTATTGGAATCCAGGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATCTCTCTAACTCACAATAA-ATA-TGATGGGTCAGGCCGACTGAAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccgacatttcagattcttcatctctgctacatgatgacaaaaatggaacctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgattgattgatattcattTCCGTACTACCTTACTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAG------------------TTCTTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAA-CTCATGGTTAGAAGGGTAGTCTTTCTTCTAAGTTCTAAATCA-CTTAGGTCATGTGATTATGCATTTTAATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144270 604 + 83442489 CCCAGTTTTCTGAGGAGTAAAGCAATGTGCAGGAAGCCTAGGTGTGT-CTTGTCTG---GTGCTCATAGCTGGTATTGGAATCCAGGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATCTCTCTAACTCACAATAA-ATA-TGATGGGTCAGGCCGACTGAAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccgacatttcagattcttcatctctgctacatgatgacaaaaatggaacctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgattgattgatattcattTCCGTACTACCTTACTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAG------------------TTCTTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAA-CTCATGGTTAGAAGGGTAGTCTTTCTTCTAAGTTCTAAATCA-CTTAGGTCATGTGATTATGCATTTTAATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979310 605 + 4267968 CCCAGTTTGCTGAGGAGTAAAGTGATGTGCAGGAAGCCTAGGTGTGT-CTTGTCTG---GTGCTCATAGCTGGTATTGGAATCCATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATCTCTCTAACTCACAATAA-ATA-TGACGGGTCAGGCCGACTGAAGCctgcttacttgtgtcaattttgaatgagttaaatttactcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaacctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgattgattgatattcattTCCTTACTACCTTACTGTCTGGGCACTAGTTTTGTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAG------------------TTCTTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAA-CTCATGGTTAGAAGGGTAGTCTTTCTTCTAATTTCTAAATCA-CTTAGGTAATGTGATTATGCATTTTAATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1959458 604 - 2193130 CCCAGTTTGCTGAGGAGTAAAGTGATGTGC-TGAAGCCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTAGTATTGGAATCCATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGTCTGGCCTAGGTCAGTGTCTCGTCTCTCTAACTCACAATAA-ATA-TGATGGGTCAGGCCGACTGGAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccaacatttcaggttcttcatctctgctacatggtgatgaaaatggaacctgaacactcaggttctgggttgaggatgaaatactatattcaaaggtacctagtaga--ctatctgactagaaagtgattgattgatattcattTCCTTACTACCTTACTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTCTTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTAGAGGGTTAAAA-CTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTATGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30031960 606 - 77216781 CCCAGTTTGCTGAGGAGTAAAGCGATGAGTAGGAAGCCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCTATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCGTGTCTGTAACTCACAATAA-ATG-TGACGGGTCAGGCCGACTGGAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaatctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgatagattgatattcattTCCTTACTACCTTATTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27944563 606 - 80997621 CCCAGTTTGCTGAGGAGTAAAGCGATGAGTAGGAAGCCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCTATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCGTGTCTGTAACTCACAATAA-ATG-TGACGGGTCAGGCCGACTGGAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaatctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgatagattgatattcattTCCTTACTACCTTATTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2000856 606 + 10377808 CCCAGTTTGCTGAGGAGTAAAGCGATGAGTAGGAAGGCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCTATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCGTGTCTGTAACTCACAATAA-ATG-TGACGGGTCAGGCCGACTGGAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaatctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgatagattgatattcattTCCTTACTACCTTATTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888256 606 - 8458610 CCCAGTTTGCTGAGGAGTAAAGCGATGAGTAGGAAGCCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCCATGAGCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATGTCTGTAACTCACAATAA-ATG-TGACGGGTCAGGCCGACTGGAGCctgcttacttgtgtc-attttgaatgagttaaatttcctcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaatctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgatagattgatattcattTCCTTACTACCTTATTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGAGTTAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64843985 606 + 75148670 CCCAGTTTGCTGAGGAGTAAAGCAATGAGTAGGAAGCCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCCATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGCTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATGTCTCTAACTCACAATAA-ATA-TGATGGGTCAGGCCGACTGGAGCCTGCTTACTTGCATC-ATTTTGAATGAGTTAAATTTCCTCCCAACATTTCAGATTCTTCATCTCTGCTGCATGGTGACAAAAATGGAATCTGAACACTCAGGTTCTGGGGTGAGGATGAAATACTATATGCAAAGGTACCTAGTAGA--CTATCTGACTAGAAAGTGATAGATTGATACTCATTTCCTTACTACCTTATTATCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TAGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGGGTTAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2067432 606 + 4244037 CCCAGTTTGCTGAGGAGTAAAGCGATGAGTAGGAAACCTGGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCCATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCGTGTCTCTAACTCACAATAA-ATG-TGATGGGTCAGGCCGACTGGAGCctgcttacttgcatc-attttgaatgagttaaatttcctcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaatctgaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgatagattgatattcattTCCTTACTACCTTATTGTCTGGGCACTAGTTTTCTCCTCCATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TGGGAAACTGAATTTACTTCTGAGATGAACTTTTACAGAGTTAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTCCAAGTTCTAAATCA-CTTAGGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGTTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095332 607 + 4569836 CCCAGTTTGCTGAGGAGTAAAGCGATGAGTAGGAAGCCTAGGTGTGT-CTTGTCTGT--GTGCTCATAGCTGGTATTGGAATCCATGATCTCTCTTCTGCATTTTCTCCCAGCTGTTATGTTTTGTCACAGCCTGGCCTAGGTCAGTGTCTCATGTCTCTAACTCACAATAA-ATATTGATGGGTCAGGCCGACTGGAGCctgcttacttgcatc-attttgaatgagttaaatttcctcccaacatttcagattcttcatctctgctacatggtgacaaaaatggaatctaaacactcaggttctggggtgaggatgaaatactatatgcaaaggtacctagtaga--ctatctgactagaaagtgatcgattgatattcattTTCTTACTACCGTACTGTCTGGGCACTAGTTTTCTCCTCTATAAATTCAGGTC--CTTCTAGCTTTAGAA------------------TTATTTGATTC-TAGGAAACTGATTTTACTTCTGAGATGAACTTTTACAGGGCAAAAAGCTCATGGTTAGAAGGGTAGTCTTTCTTGCAAGTTCTAAATCA-CTTAAGTCATGTGATTGTGCATTTTCATTT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAAAAGACAATCTAGCTTC i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35873637 619 - 65901067 CCCAGTTTACTAAGGAGCAGAGCCATATGCAGGAAGCCTAGGTGTCTTCTTGCCTGT--GTGATCATAGCGGATGTTGGAAGCCCCGATCTCTTTTCTGCATTTTCTCCCATTTCTTGTGTTTTCTCCCACCCTAGCCTAGGCCAGAGTCTCATCTCTCTAACTCACAGTCA---G-TGATgggccaggcagacttgagtctctttacttacatc-aattcagacaagttaaatttctacccaatgtctcagattcttcatctctggtacatggtgacaacaatggaatctgaacacccagggtttggggtgaggctgaaatactgtgtgcgaagatactcagcaga--ctgtcAATCTAGAAAGTGATCTATTGATATTCATTGCCATACTATCTCACTGTCTGGGCACTAGTTTTATCCTCCACAAATTCAGCTC--CTTCTAGCTTTAGAATTTGTTAATTCTTTAGACTTCTTTGATTC-TGGGAAACAG----CACTTCTGCAGTAAACTTTTACAGGGTTAAAAGTTTGGAGTTAGGAAGGTAGGCTTTCTCCTAGGTTCTAAATCACCTTAGGTCATGTGATTGTGCATCTTCC-TT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGTTCATAAAAGGTGATCTAATTTC i micMur3.chr16 C 0 I 44 s proCoq1.NW_012135969v1 2960369 621 + 8555354 CCCAGTTTGCTAAGGAGTAGAGCCATGTGCAGGAACCCTAGGTGTCTTCTTGTCTGT--GTGCTCACAGCTGACATTGGAAGCCCTGATCTCTATTGTGCACTTTCTCCCAGCCCTTGTGTTTTCTCCCACCCTAGCCTAGGTCAGGGTCTCATCTCTCTAacttataatca---g-taatgggccagacagacttgagtctgtttacttatatc-attttggacaagttaaatttccacccaatgtctcagattcttcatctctggtacatggtgacaataatggaatctgaacacccggggtttggggtgaggatgaaatactatgtgtgaaggtactcagcaga--ccgtcaaactagaaagtgatctattgatattcattGCCTTACTATCTGACTGTCT-GACACTAGTTTTATCCTCCA-AAATTCAGCTC--CTTCTAGCTTTAGAATTATTTGATTCTTTAGACTTCTTTGGTTC-TGGGAAACAGAACTTACTTTGGAGGTAAACTTTTACAGGGTTAAAATTTTGGGTTTAGGAAGGTAGGCTTTCTCCTAGGTTCTAAATCACCTTAGGTCATGTGATTGTGCATCTTCA-TT----------------------------------------------------------------------GCTTAG---------------------------------------------------------------------------------------------------------------------------------------ATATTCATAAAAGACAATCTAATTTC i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22755613 597 + 28711273 CTCAGTTTACTAAGGAGCAAAGCCATGCACAGGAGGCCTCGGTGTTTCTTCTTCCCC--TTGCTCATACCTAGTGTTGGAAGCTATAATTTCTTTTCTACATTTTCTCCCTGTTC-TGTGTTTTCTCCCCGTTTGGCCTATATCAGTGTCTCATCTCTCTGACTCACAGTAA---------GGGACAGACATACCTGAGTTTGT----TAAtgtc-attttggacaaattcgatttctacccaacatcttagatttttcatctctgatacatggtgacaacaatggaatccgaacacctagggtttatggtgaggatgaaatggtatgtgtgaaagtactcagTAGACTCTGTCTAACTAGGAAGTTATCTATTTATATTCATTTACTTGCTATCTCACTATTTAGGTACTAGTTTTGTCCTCCATAAATTCAGTTC--CTTCTGGTGTTAGAA------------------TTCGTTGATTC-TAGGAAACTCAACGGAATGCTGAGGTAGACCTTTTCAGGGTTCAAAGTTCAAGGTTAGAAGGGTGGGCTTTCCCCCATGTTTCAAATCACCTTAGGTCATGTGGTTACACATTTTCA-TT----------------------------------------------------------------------GCTTGG---------------------------------------------------------------------------------------------------------------------------------------TTGTTAAAAAAAGTCAATCTAATTTC i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21374440 806 + 61074082 TCCACTTTGCTGAGGAGCAAAGCAATATGCAGGAAGCCTAGGTGTGT-CTT-CCTGTCCATGCTCAGAGTTGGCATTGGAATTCATGAGCTACCTACTG--TTTTCTTCCAGTTCTTGTGTTTTGTCACACCTTGGTCTGTGCCAGTGTCTCATCTCTCTACTTCACAATGAGGTG-GGAtgggtccagaagacttgagtctacttatttgtgtc-attttggacaagttcactttattc--------tcagattctttatttctgatacatggtgacaataatggcattgaaacattcagagtttggggtgaggatggaatactatatgtgaagggttctagtgga--ctacctgATGAGAAAGTGACATATTGCTGCTCATTTATTTCCTGTCTTACCATCTGGGCCTCAGTTTTCTTCTCCATAAATTCAGGTCTTTTTTTAGCTTTAGAG------------------TTCTTTGATTCTTAGGAAATAGATCTTACTTCTGGGGTGAA-TTTTACAGGACTAAAACGTCAGGGTGAGGCAAGTAGGCTTTCTCTCAGATTCTAAATAACTTTAGGCTGTGCCATTGTACATTTTGATTTTTTTTTTAGTTGCTAAGAAAAGGCAATATAgggtgcctgggtggcttagtcagttaagtgtctggctttggcttaggtcatgatcccagggtcctgggatagagtcccgcattgggctccccactcagtggggactctgcttctccctctctttctgctcctccccctacttgtgctctctatctctctttaataaatagataaataaaatattttttaaaaaGGCAATCCAATTTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 352960 579 - 852752 CCCAGTTTACTGAAGAGCAAAGCAATGTGT--------------CTT-CTTGTCCAT--GTGCTCAGAGTTGGCGTCGTAATTCATGATCTCTTTCATGTGTTTTCTCTCCGTTTCTGAGTTTTGATACACCCTGGTCTAGGCCAGCACCTCATCTCTTTGGCTCTCAGTGAGGTG-TGATgggccaagtagacttgggtctacttacttgtgtg-aacttggacaagttacatttcctcctaaagtctcagtttcttccactctgatacacgacaatgataacggaatctgaacaccaagggtttg-ggtggggagggcatgctatgtgtgaaggtagctagtaga--ctacctgactagaaaacagtctattgatgttTGGCTCCTTCCTGcttcactgtctgggccccagttttctcatccataaagtCACATC--CTTCCAGTTTTAGAAT-----------------TTTTTTGATTC-TACGAAACAGAAATAACTTCTGAGATAAACTTTTACGG--------------GGTTGGGTGGGTAGGCTTTCTCTGAGATTCTAAATCACTTCAGAGCATCCCATTGTGC-TTTTTGCTT----------------------------------------------------------------------ACTTAG---------------------------------------------------------------------------------------------------------------------------------------ATGCTAAGAAAAGGCAAAATAATTTC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=43096.000000 s hg38.chr17_GL383564v2_alt 43511 8 + 133151 CAGTTTGG s panTro5.chr17 16237408 8 + 83181570 CAGTTTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144874 8 + 83442489 CAGTTTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979915 8 + 4267968 CAGTTTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1960062 8 - 2193130 CAGTTTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30032566 8 - 77216781 CAGATTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945169 8 - 80997621 CAGATTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2001462 8 + 10377808 CAGATTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888862 8 - 8458610 CAGATTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64844591 8 + 75148670 CAGATTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068038 8 + 4244037 CAGATTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095939 8 + 4569836 CAGATTGG i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2960991 7 + 8555354 CATCTAG- i proCoq1.NW_012135969v1 I 1 I 8 s otoGar3.GL873537 22756211 7 + 28711273 CATCTAG- i otoGar3.GL873537 I 1 I 8 s canFam3.chr9 21375246 8 + 61074082 CAATCTGG i canFam3.chr9 C 0 I 11 s dasNov3.JH570468 353539 8 - 852752 CAATCTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35874256 44 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=2085323.000000 s hg38.chr17_GL383564v2_alt 43519 220 + 133151 --------ATCAATTATGCAAAAGGACGATTATTTCCCTGTGGAGAAAAATAAATGAGTAAGA--CTTGGCCTTAGTTCAGGAAGGTACCATAGAGATTAGCTG--GGTGCTCAAAGGTTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAAGGGG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAGG-AAAAACTACGAAGTAAGGGGCAATGGGAAGCAATGAAT s panTro5.chr17 16237416 220 + 83181570 --------ATCAATTATGCAAAAGGACGATTATTTCCCTGTGGAGAAAAATAAATGAGTAAGA--CTTGGCCTTAGTTCAGGAAGGTACCATAGAGATTAGCTG--GGTGCCCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAAGGGG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAGG-AAAGACTATGAAGTAAGAGGCAATGGGAAGCAATGAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16144882 220 + 83442489 --------ATCAATTATGCAAAAGGACGATTATTTCCCTGTGGAGAAAAATAAATGAGTAAGA--CTTGGCCTTAGTTCAGGAAAGTACCATAGAGATTAGCTG--GGTGCCCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAAGGGG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAGG-AAAGACTATGAAGTAAGAGGCAATGGGAAGCAATGAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3979923 221 + 4267968 --------ATCAATTATGCAAAAGGACGATTATTTCCCTGTGGAGAAAAATAAATGAGTAAGA--CTTGGCCTTAGTTCAGGAAGGTACCATAGAGATTAGCTG--GGTGCTCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGTAGTATGAAGGGG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAGGAAAAAACTATGAAGTAAGGGGCAATGGGAAACAATGAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1960070 220 - 2193130 --------ATCAATTATGCAAAAGGACGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCGGGAAGGTACCATAGAGATTAGCTG--GGTGCCCGAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGACGGAGTATGAAGGGG-TGGGGAACTGGGCCCTGGAGGGGACCAGAAGG-AAAAACTACGCAGTAAGGGTCAATGGGAAGCAATGAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30032574 220 - 77216781 --------ATCAATTATGCAAAAGGATGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCAGGGAGGTACCATAGAGATTAGCTG--GGTGTCCAAAGGCTTGGGCAGAGAAGCCTTTGGAGGAATGATGGAGTATGAAGGAG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGTGATGGGAAGCAATGAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945177 220 - 80997621 --------ATCAATTATGCAAAAGGATGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCAGGGAGGTACCATAGAGATTAGCTG--AGTGTCCAAAGGCTTGGGCAGAGAAGCCTTTGGAGGAATGATGGAGTATGAAGGAG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGTGATGGGAAGCAATGAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2001470 220 + 10377808 --------ATCAGTTATGCAAAAGGATGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCAGGGAGGTACCATAGAGATTAGCTG--GGTGTCCAAAGGCTTGGGCAGAGAAGCCTTTGGAGGAATGATGGAGTATGAAGGAG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGTGATGGGAAGCAATGAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1888870 220 - 8458610 --------ATCAATTATGCAAAAGGATGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCAGGGAGGTACCATAGAGATTAGCTG--GGTGTCCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAAGGAG-TGGGGAATAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGTGATGGGAAGCAATGAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64844599 220 + 75148670 --------ATCAACTATGCAAAAGGATGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCAGGGAGGTACCATAGAGATTAGCTG--GGTGTCCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAAGGAG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGCGATGGGAAGCAATGAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068046 220 + 4244037 --------ATCAATTATACAAAAGGATGATTATTTCCCTGTGGAGAAAAGTAAATGAGTAAGA--CTTGGCCTTAGTTCAGGGAGGTACCATAGAGATTAGCTG--GGTGTCCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAAGGAG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGCGATGGGAAGAAATGAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2095947 220 + 4569836 --------ATCAATTATGCAAAAGGATGATTATTTCCCTGGGGAGAAAAGTAAATGAGTAAGA--CTTGACCTTAGTTCAGGGAGGTACCACAGAGATTAGCTG--GGTGCCCAAAGGCTTGGGCAGAGAGGCCTTTGGAGGAATGATGGAGTATGAGGGAG-TGGGGAACAGGGCCCTAGAGGGGACCAGAAAG-AAAAACTACAAAGTAAGGGGGGATGGGAAGCAATGAAT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35874300 225 - 65901067 --------ACCAACTATGCAAAAGGATAGTTGTTTCCCCGTGGAAGAAGGTAAATGAGTGAAACTCTTGGTTTTAGTTCAGGAAGGTGCCATAGAGAGTAGCGCCATGTGCCCAGCGTCTTGGGCAGAGAGGCCTTTGGAGGACTGATGGGGTATGAAGGAGGTGGGGAACAGGGCCCCAAAAGGGACCAGAAAG-AAAAACTACAAAGCAAGGGGCAATGGGAAGCAATGAAT i micMur3.chr16 I 44 I 77 s proCoq1.NW_012135969v1 2961006 221 + 8555354 --------ACCAACTATGCAAAAGGATAGTTGTTTCCCTGTGGAGAAATGTAAATGAGTGAAA--CTTGGTCTTAGTTCAGGAAGGTACCATGGAGAGTAGTTT--GGTGCCCAAAGGCTTTGCCAGAGAGGCCTTTGGAGGACTGATGGGGTGTGAAGGGGGTGGGGAACAGGGCCCCAAAGGGGATCAGAATG-AAAAACTACAAAGCAAGGGGCAATGGGAAGCAATGAAT i proCoq1.NW_012135969v1 I 8 I 10 s otoGar3.GL873537 22756226 214 + 28711273 --------ACCACCCATGTGAAAGGATAGTTGTTTCCCTGTGGAGAAAAATGAATGGGTGAGA--------CTTAGGGGAGCAAGGTAGCATAGAGAGTAGCTG--GGTACACAAAGGCTAATGCAGAGAGGCCTTTGGAGGACTGATGGGGCAGGGAGGGGATGGGAACCATGGCGCCAAAAGGGACCAAAAGG-AAAAAGTACAATGTGAAGGACAATGAGTGGC-ATGAAT i otoGar3.GL873537 I 8 I 10 s canFam3.chr9 21375265 211 + 61074082 --------ACCAGCTATGCAAGAGGGCAACCATTTGCCTATGGAGAAAA-TAAAT-AGTGTAA--TTTG------GTTCAAGAGGGTACCATAGAGAGTAGCTA--AATGAGAGAGGCCTTTGGACAGAAAGACTTTGGGGCATTGATAGGGTTGGGAGGGG-CTGGGA-CAGGGCTCCAGTGAGAATCAGAAGC-AAAAACTATAAAGAGAGGGGCAATGGGAAGAAAGGAAT i canFam3.chr9 I 11 I 11 s dasNov3.JH570468 353547 217 - 852752 AAATATCATTCAATTATGTTAAAGAGTGGCCACTTCCCTGTGGAGAAAAGAAAGTGAGTATAA--CTTTGTCTTATTTCAGGAAAGGACCACAGAGAGTAGCTG--GGGAGAGAACTGCTTGGACAGAGA--CCTTTGAAG--------GGGTCTGGGGTAG--GGAAAACAGGGTCTCAGGGGGGACTAGAAGG-AAAAACTATAAAGGGAGAGGCATCTGGCAGAAATGAAT i dasNov3.JH570468 C 0 I 10 e mm10.chr11 22036792 3587 - 122082543 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=738013.000000 s hg38.chr17_GL383564v2_alt 43739 91 + 133151 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTA--------CTGTGTTTAGGTGTTCATGATCAggagtcataaacctgaa s panTro5.chr17 16237636 91 + 83181570 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTG--------CTGTGTTTAGGTGTTCATGATCAggagtcatagacctgaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145102 91 + 83442489 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTG--------CTGTGTTTAGGTGTTCATGATCAggagtcatagacctgaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980144 91 + 4267968 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTgta--------ttgtgtttaggtgttcatgatcaggagtcataaacctgaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1960290 91 - 2193130 ATTTCCCTCACAAA-CCAGAGAAACTTCTGTGCCAAATATAAAGGT-----TTCGTA--------CTGTGTTTAGGTGTTCATGATCAggagtcatagacatgaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30032794 91 - 77216781 ATTTCCCTCACAAA-TCAGAGAAACCTGTGTGCCAAATATAAAGGT-----TTTGTA--------TTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945397 91 - 80997621 ATTTCCCTCACAAA-TCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTA--------TTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2001690 91 + 10377808 ATTTCCCTCACAAA-TCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTA--------TTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889090 91 - 8458610 ATTTCCCTCACAAA-TCAGAGAAACCTCTGTGCCAAATATAAAGAT-----TTTGTA--------TTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64844819 91 + 75148670 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTA--------TTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068266 91 + 4244037 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTA--------TTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096167 91 + 4569836 ATTTCCCTCACAAA-CCAGAGAAACCTCTGTGCCAAATATAAAGGT-----TTTGTA--------CTATGTTTAGGTGTTCATGATCAggagtcatagacctgaa i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2961237 92 + 8555354 CTTTCCCTCACAAAACCAGAGAAGTCTTTGTGCTAAATATGAGGTT-----TTTGCA--------GTGTGTTTAGGTGTTcaggattgggagtcagacacttgag i proCoq1.NW_012135969v1 I 10 C 0 s otoGar3.GL873537 22756450 104 + 28711273 CTTTCTGTTACAAACCCAGAGAAGCCTCAGTGTCTAATAAGAGGTTTGGTGTTCACACCTCTTATTTgtgcttaggtgttca-gatcagaagtcagaaggctgag i otoGar3.GL873537 I 10 C 0 s canFam3.chr9 21375487 84 + 61074082 CTTCCCCTCACAAAATCAGAGCAACTTCTGTGCCGAATG------------TTTTCA--------CTATGTTTAGGTATCcaggcttaagggttagaca-atgaa i canFam3.chr9 I 11 C 0 s dasNov3.JH570468 353774 91 - 852752 CTTTCTCTCCCAAAATTATAGAAGTTTCTGCACCAAATGTAAGGCT-----TCTGCA--------CTGTGCTTagg-gttcaggctcaagagtcagatgcctgag i dasNov3.JH570468 I 10 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35874525 77 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=3857410.000000 s hg38.chr17_GL383564v2_alt 43830 424 + 133151 ttgttcaaatccctgctccaccatttattgcctgtatctagggcaaatgtggagcctttcccagtttatttctttatctgtaac-atgggaa------taatagg-ccaacttt-atacagttgttgggagaatcaaatgagaaatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCATTATTACAAATGCTTGCACAGAGCTATAAGGCTAGAAGATTCCAAGAGGATAACAAAAGCACA--TTTCAATCCCAGTACCAGAAAAGAGGCTTTGGTGATATTACAATTTCATGTGGAGAACTTGTCCTCCTCCAGAACTACCCCAAATAAGATAACCAAACCCACAAGATCAGGAACTTAGCAGAGAAGATAGAGG- s panTro5.chr17 16237727 424 + 83181570 ttgttcaaatccctgctccaccatttattgcctgtatctagggcaaatttggagcctttcccagtttatttctttatctgtaac-atgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagaaatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCATTATTACAAATGCTTGCACAGAGCTATAAGTCTAGAAGATTCCAAGAGGATAACAAAAGCACA--TTTCAATCCCAGTACCAGAAAAGAGGCTTTGGTGATATTACAATTTCATGTGGAGAACTTGTCCTCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacttagcagagaagatagagg- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145193 424 + 83442489 ttgttcaaatccctgctccaccatttattgcctgtatctagggcaaatttggagcctttcccagtttatttctttatctgtaac-atgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagaaatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaacggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCATTATTACAAATGCTTGCACAGAGCTATAAGTCTAGAAGATTCCAAGAGGATAACAAAAGCACA--TTTCAATCCCAGTACCAGAAAAGAGGCTTTGGTGATATTACAATTTCATGTGGAGAACTTGTCCTCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacttagcagagaagatagagg- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980235 424 + 4267968 ttgttcaaatccctgctccaccatttattgcctgtatctagggcaaatttggagcctttcccagtttatttctttatctgtaac-atgggaa------taatagg-ccaacctt-gtagagttgttgggagaatcaaataagaaatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCATTATTACAAATGCTTGCACAGAGCTATAAGGCTAGAAGATTCCAAGAGGATAACAAAAGCACA--TTTCAATCCCAGTACCAGAAAAGAGGCTTTGGTGATATTACAATTTCATGTGGAGAACTTGTCCTCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacttagcagagaagatagagg- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1960381 424 - 2193130 ttgttcaaatccctgctccaccatttattgcctgtatctagggcaaatttggagcctttcctagtttgtttctttatctgtaac-atgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagaaatgtacccaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCATTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCACA--TTTCAATCCCAGTACCAGAAAAGAGGCTTTGGTGATATTACAATTTCATGTGGAGAACTTGTCCTCCTCAAGAACTACCCCAAATAAGATAACCAAACCCACAAGATCAGGAACTTAGCAGAGAAGATAGAGG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30032885 425 - 77216781 ttgttcaaatctctgctccaccatttattgcctgtatctagggcaaatttggagcctttccccatttgtttctttatctgtaacaatgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCCTTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGCTTCGGTGGTATTACAGTTTCGTGTGGAGAACTTATCCGCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacctagtagagaagatagagg- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945488 425 - 80997621 ttgttcaaatctctgctccaccatttattgcctgtatctagggcaaatttggagcctttccccatttgtttctttatctgtaacaatgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCCTTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGCTTCGGTGGTATTACAGTTTCGTGTGGAGAACTTATCCGCCTCAAGAACTACCCCAAATAAGATAACCAAACCCACAAGATCAGGAACCTAGTAGAGAAGATAGAGG- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2001781 425 + 10377808 ttgttcaaatctctgctccaccatttattgcctgtatatagggcaaatttggagcctttccccatttgtttctttatctgtaacaatgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCCTTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGCTTCGGTGGTATTACAGTTTCGTGTGGAGAACTTATCCGCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacctagtagagaagatagagg- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889181 425 - 8458610 ttgttcaaatctctgctccaccatttattgcctgtatctagggcaaatttggagcctttccccatttgtttctttatctgtaacaatgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCCTTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGCTTCGGTGATATTACAGTTTCGTGTGGAGAACTTATCCGCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacttagtagagaagatagagg- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64844910 424 + 75148670 ttgttcaaatctctgctccaccatttattgcctgtatctagggcaaatttggagcctttccccatttgtttctttatctgtaac-atgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------ACTGCCATTATTATCCTTATTACAAATGTTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGCTTCGGTGATATTACAGTTTCATGTGGAGAACTTATCCGCCTTAAGAACTACCCCAAATAAGATAACCAAACCCACAAGATCAGGAACTTAGTAGAGAAGATAGAGG- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068357 424 + 4244037 ttgttcaaatctctgctccaccatttattgcctgtatctagggcaaatttggagcctttccccatttgtttctttatctgtaac-atgggaa------taatagg-ccaacctt-atacagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggagtctaataaacc-ttgatgaaatggcagA------------ATCATCATCAACAACAAC------GCTGCCATTATTATCCTTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGGTTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGCTTCAGTGATATTACAGTTTCGTGTGGAGAACTTATCCGCCTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacttagtagagaagatagagg- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096258 421 + 4569836 ctgttcaaatccctgttccaccatttattgcctgtatctagggcaaatttggagcctttccccgtttgtttctttatctgtaac-atgggaa------taatagg-ccaacctt-ataaagttgttgggagaatcaaatgagacatgtgccaaagtgcttagtgccttgtttggcatctaataagcc-ttgatgagatggcagA---------------ATCATCAACAACAAC------ACTGCCATTATTATCCTTATTACAAATGCTTGCACAGAGCTATAAGGCTGGAAGATTCCAAGAGGATAACTAGAGCCCA--TTTCAATTCCAGTACCAGAAAAGAGGTTTTGGTGATATTACAGTTTCATGTGGAGAACTTATCCTCTTCAAGAACTACCCCAAATAAGATAACCAAacccacaagatcaggaacttagcagagaagatacagg- i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35874602 426 - 65901067 ttgctcaaatctctgctccatcccttattggctatatcttgggcaaattttgagccttttgcaatttgtttctcaatctgtaca-atggaaa------taatagg-ccaaactt-atagggctgttgggaggataaagtgagaaatgtgccaaagtgcttagcacctagtttggcacctggtaagta-ttcatgaaatggtaCAatcatcaccatcatcatcaccaacaacaataacaacactgccatcatcatcattattatAGATGCTTGCCCAGAACAGTCAGGCTGGAAGATTCCCAGAGGATGAGTAGGGCCTG--TTTCAATGCCAG-ACCAGAAAGGAGGCTTTGGTGATAATACAATTCCATG----------GTCCTCCTCAAGAACCACCCCAAAT-----AACCAACCTGACAAGATTAGGCACTTAACAGAGAAGGTAGGGG- i micMur3.chr16 I 77 I 16 s proCoq1.NW_012135969v1 2961329 426 + 8555354 ttgctcaaatctctgctccatcccttaatggctatatcttgggcaaattttgagcctttcgcaatttgtttcttaatctgtaca-atgggaa------taatagg-ctaaactt-gcagcgttgttgggaggatcaagtgagaaatgtgccaaagtgcttagcacctagtttggcacctgataagta-ttcatgaaatggtagAACcatcaccatcatcgtcatgatcaacaataacaacactgccatcatcgtcattatcatAGATGCTTGCCCAGAGCTGTAAGGCTGGAAGATTCCCAGAGGATGAGTAGGGCCTG--TTTCAACGCCAG-ACCAGAAAGGAGGCTTTGGTGATAATATAATTCCATG----------GTCCTCCTCCAGAATCACCCCAAAT-----AACCAACCTGACAAGATTAGGCACTTAACAGAGAAGGTAGGGG- i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22756554 384 + 28711273 ttgctgaaatccctggtgcatcaccttttggctacatcttgcacaatttttgagactttctcaacgtgtttctttatctgtaaa-gtggtaa------taatagg-ccaagcttaatagagtggttgagaggatcaaatgagaaatgtgccaatgagcttagcttcttgtttggcacctaataggta-ttcaaG-------------GTCACCATCATCAGAATCAACCACAAT------GCTGCCATCGACTTCATTATTAT-TACGCTTGCCCAGAGCCATAAGGCTAGAAGATTCTCATAG--TTTATGGGGCCTG--TTTCAATGCCAGTACCAGAATGG-------------------------TG----------GTGCTTCTCAAGAATCACGCCAAATAAG--AAGCAAACCAAAAAGATCAGGAACTAAGCAGAAAAGATACCAG- i otoGar3.GL873537 C 0 I 6 s canFam3.chr9 21375571 428 + 61074082 ttgttcaaatcccagctctgccacttattggctgtgtcatgggaaaactctgagcctttctcaatttgttaatttatctgtaaa-gtgggaataattttaatagg-ccaatttt-acaggcttgttgggagagtcaaatgagaaatgttccatagcacttagtgccttgtttggcacagaataagttattcatgaagtggtaAA--------TAAAATCATAAGCATCACCCAA------ACCACCATTATC------ATTATGGATGTTAGCACAGAAACACAAGGCTGGGAGATGCACAGAAAGTGAGTAGAGCCCA--TTTCAATGCCTGTA-CAAAAAGAAGGCTTTGGTGGCAATACAACCCAGTGTAGAGAACCTGTCGTCCTCAAGAACCAACCCAAATAAGATAACCAAATCCATAAGATCAGTAACTTATCAGAGAACGTAGGGA- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 353865 387 - 852752 ttactcaaatcccagct----------gtggctgtgtcttgggaagattctgagcctttcccagcctgtttcttcatctgtaaa-atgggga------taagaggaccaacctt-atagggttgttgggaggatcaaatgagaaa-atgcaaaagtgcttagcacactgtttggca------------ttcaTGAAATGGTGGT------------AGCATCATCA----CATC------TCTGCCATCATC------ATTATGAATGCTTGTGCAGAGCTGTA------GAGGATTCCTGGAGGATGAGCAGAGTCCATTTTTCAATGCCAATACCAGAAAGGAGGCTTCGGTGGCAATACAACCCCATGTGAAGAACTTGTCTTCCTCAAGAAC-ACCCCAAATGAACTTATCAAACCCACAAGAGCAGGCCCGTAGCAGAG--GACAGGGGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=99542.000000 s hg38.chr17_GL383564v2_alt 44254 14 + 133151 TAAT-GG-TTATCTG-C s panTro5.chr17 16238151 15 + 83181570 taat-gg-ttatctgcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145617 15 + 83442489 taat-gg-ttatctgcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980659 15 + 4267968 taat-gg-ttatctgcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1960805 15 - 2193130 TGAT-GG-TTATCTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033310 15 - 77216781 taat-gg-ttatctgcc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945913 15 - 80997621 TAAT-GG-TTATCTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002206 15 + 10377808 taat-gg-ttatctgcc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889606 15 - 8458610 taat-gg-ttatctgcc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845334 15 + 75148670 TAAT-GG-TTATCTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068781 15 + 4244037 taat-gg-ttatctgcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096679 15 + 4569836 taat-gg-tcatctgcc i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2961756 14 + 8555354 CAAT-GG-TCATCAAC- i proCoq1.NW_012135969v1 I 1 I 1 s otoGar3.GL873537 22756944 14 + 28711273 CAAT-GG-TTATCTTC- i otoGar3.GL873537 I 6 I 1 s canFam3.chr9 21375999 16 + 61074082 CAATGGG-CCTTCTGTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 354252 16 - 852752 CAAT-GGCCCATATACC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35875028 16 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=307434.000000 s hg38.chr17_GL383564v2_alt 44268 30 + 133151 AACTTCCTATTTCAACCACTAAGTTAATGT s panTro5.chr17 16238166 30 + 83181570 aacttcctatttcaaccactaagttaatgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145632 30 + 83442489 aacttcctatttcaaccactaagttaatgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980674 30 + 4267968 aacttcctatttcaaccactaagttaatgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1960820 30 - 2193130 AACTTCCTATTTCAGCCACTAAGTTAATGT i nomLeu3.chrUn_GL397460_1 C 0 I 315 s rheMac8.chr16 30033325 30 - 77216781 aaattcctatttcagccactaagttaaggt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945928 30 - 80997621 AAATTCCTATTTCAGCCACTAAGTTAAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002221 30 + 10377808 aaattcctatttcagccactaagttaaggt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889621 30 - 8458610 aaattcctatttcagccacgaagttaaggt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845349 30 + 75148670 AAATTCCTATTTCAGCCACTAAGTTAAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068796 30 + 4244037 aaattcctatttcagccactaagttaaggt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096694 30 + 4569836 aaattcctatttcagccactaagttaaggt i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35875044 30 - 65901067 AACTTCCTATTCCAGTCACTAAGTTAATGT i micMur3.chr16 I 16 C 0 s proCoq1.NW_012135969v1 2961771 30 + 8555354 AACTTCCTATTCCAGCCACTAAGTTAATGT i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22756959 29 + 28711273 AACTTCTT-TTCCAACCACTAAGTTAATGT i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21376015 30 + 61074082 AATTTCCTATTCTGGCTACCAACTTAATGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 354268 30 - 852752 AATTTCCTATTCCAGCCACTGAGTTAATGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=2116037.000000 s hg38.chr17_GL383564v2_alt 44298 238 + 133151 TAACATTTGCA-TTTTGATGGTTAATTTATGAATAGAGTTCTGTGCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACTGGGTTGGGATGGGCAATGGGC-AATTTGTCTGCTTAACGAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACCTGG-GTCAACAATAGGAACAATGAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-AAACATGTTCACACACA s panTro5.chr17 16238196 238 + 83181570 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTTGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACTGGGTTGGGATGGGCAATGGGC-AATTTGTCTGCTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACCTGG-GTCAACAATAGGAACAATGAAGTTTATGGAAATAAACATCATCACCCCCTCCCCC-AAACATGTTCACACACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145662 238 + 83442489 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTTGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACTGGGTTGGGATGGGCAATGGGC-AATTTGTCTGCTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACCTGG-GTCAACAATAGGAACAATGAAGTTTATGGAAATAAACATCATCACCCCCTCCCCC-AAACATGTTCACACACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980704 238 + 4267968 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACTGGGTTGGGATGGGCAATGGGC-AATTTGTCTGCTTAACGAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACCTGG-GTCAACAATAGGAACAATGAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-AAACATGTTCACACACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961165 238 - 2193130 TAACATTTGCA-TTTTGATGGTTAATTTATGAGTAGAGTTCTGTGCCCCTAGTACTTACAAGGTAAGTGCGTGAAG-TTTGAGCATGACTGGGTTGGGATGGGCAATGGGC-AATTTGTCTGCTTAACAAAGAAGAATTTTCACAAAATTATTCATCTGAGCCACCTGG-GTCAACAATAGGAACAATGAAGTTTATGGAAATAAACATCATCACTCCCTCCCTC-AAACATGTTCACACACA i nomLeu3.chrUn_GL397460_1 I 315 C 0 s rheMac8.chr16 30033355 238 - 77216781 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGGGC-AATTTGTCTGTTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTAG-GTCAACAATAGGAACAATAAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-aaacatattcacacaca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27945958 238 - 80997621 TAACATTTGCA-TTTTGATGGTTAATTTATGAATAGAGTTCTGTGCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGGGC-AATTTGTCTGTTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTAG-GTCAACAATAGGAACAATAAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-AAACATATTCACACACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002251 238 + 10377808 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGGGC-AATTTGTCTGTTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTAG-GTCAACAATAGGAACAATAAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-AAACATATTCACACACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889651 238 - 8458610 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGGGC-AATTTGTCTGTTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTAG-GTCATCAATAGGAACAATAAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-aaacatattcacacaca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845379 238 + 75148670 TAACATTTGCA-TTTTGATGGTTAATTTATGAATAGAGTTCTGTGCCCCTAGTACATACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGGGC-AATTTGTCTGCTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTAG-GTCAACAATAGGAACAATGAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-AAACATATTCACACACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2068826 239 + 4244037 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGGGC-AATTTGTCTGCTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTAG-GTCAACAATAGGAACAATAAAGTTTATGGAAATAAACATCATCACTCCCTCCCCCAAAACATATTCACACACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096724 238 + 4569836 taacatttgca-ttttgatggttaatttatgaatagagttctgtgCCCCTAGTACTTACAAGGTAAGTGGGTGAAG-TTTGAGCACCACCGGGTTGTGATGGGCAATGAGC-AATTTATCTGCTTAACAAAGTAGAATTTTCACAAAATTCTTCATCTGAGCCACTTGG-GTCAACAATAGGAACAGTGAAGTTTATGGAAATAAACATCATCACTCCCTCCCCC-aaacatgttcacacaca i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35875074 240 - 65901067 GAAAATCTGCATTTTTGTTGACTGATTTATGAGTAGGGTTCTGTGTCTCTAGTGCTTACAAGGTGTGTGAGTGAGG-TTTGCTCACCACCGGGTTAGCATGGGCAATGTGCCCAGGTATCTACTTAACAAAGTCAAATTTTCACAAAATACTTCATCTGGGTAATCAGG-GCCAACAGTAGGAAGGATAAAGTTTACAGAAATAGTCATCATCACTCCCttgcat-aaccatgttcacacaca i micMur3.chr16 C 0 I 1699 s proCoq1.NW_012135969v1 2961801 240 + 8555354 CAAAATTTACATTTTTGTTGATTGATTTATGAGTAGCATTCTGTGTCCCTAGTGCTTACAAGATGCGTGAGTGAGG-TTTGCTCACCACTGGGGTAGTGTGGGCAATGTGCCCAGATATCTACTTAACAAAGTCGAATTTTCACAAAATACTTCATCTGGGTAATCTGG-GCCAACAGTAGAAAGGATGAAGTTTACAGAAATAGTCATCATCACTCCCTCCCAT-AACCATGttcacacaca i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22756988 236 + 28711273 CAAAACTTGCATTTTTGTTGATTAACGTATGAGTAGAG-TCTGTGTCCCTAGTGCTTGCAAG----GTAAGTGAGG-TTTGCTTACCGCTGGCTTGGCATGAGCAATGTGCTCAGGCAACTACTCAACAAAGTAGAATTTCCACAAAATACTTCATCTGAATCACCTGGAGCCAACAATAGGAAGGATGAAATTTATAGAAAGAGTCATTATTGCTCTCTATGCA-AAGCATGTTCACAGATA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21376045 237 + 61074082 TAAAATTTGCATTTTTGTTGATTAATTCATGAATATAATTCTGTGCTCCTAGCATTTGCATAGTAGGTAAATGAGGTTTTTATCACCATTGGGTAGGTATGGGCAATGTGCTCAAGTGTCTTCTCAACAGAACTGAATTTTCAGAAAATTCTACATCTGAGCCATCTGG-GCCAAGAATAGGAAGGAGGAAGTTTATAGAAATAATCATCGT----CCCACCCCC-AACCGTATTcacacact i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 354298 142 - 852752 TAAAACTTGCATTTTGGTTGATTAATTCATGGATATAG-TCCATGCGTCTAGTGCTCGTCAGGTAAGTGTGTGAGG-TTTGATCACCACTGGGTTAGCATGAGGGATTTGC------------------------------------------------------CCAG-AT----------GATAATGAAa----------------------------------aaatatgctcaggcata i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=93140.000000 s hg38.chr17_GL383564v2_alt 44536 11 + 133151 ATACCTTACCT s panTro5.chr17 16238434 11 + 83181570 ATACCTTACCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145900 11 + 83442489 ATACCTTACCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980942 11 + 4267968 ATACCTTACCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961403 11 - 2193130 ATACCTTACCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033593 11 - 77216781 ataccttacct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946196 11 - 80997621 ATACCTTACCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002489 11 + 10377808 ATACCTTACCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889889 11 - 8458610 ataccttacct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845617 11 + 75148670 ATACCTTACCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069065 11 + 4244037 ATACCTTACCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096962 11 + 4569836 ataccttacct i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2962041 11 + 8555354 gtatattactc i proCoq1.NW_012135969v1 C 0 I 14 s otoGar3.GL873537 22757224 11 + 28711273 ATATATTCCTT i otoGar3.GL873537 C 0 I 18 s canFam3.chr9 21376282 9 + 61074082 --atattactt i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 354440 11 - 852752 atatcttactt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35875314 1699 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=8939.000000 s hg38.chr17_GL383564v2_alt 44547 43 + 133151 TTTGCaaaa-aaaaa--caaaaacaaaaacaaacaaacaaaaaaac s panTro5.chr17 16238445 44 + 83181570 TTTGCaaaacaaaaa--caaaaacaaaaacaaacaaacaaaaaaac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145911 44 + 83442489 TTTGCaaaacaaaaa--caaaaacaaaaacaaacaaacaaaaaaac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980953 43 + 4267968 TTTGCaaaa-aaaac--caaaaccaaaaacaaacaaacaaaaaaac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961414 33 - 2193130 TTTGCaaaa----------aaaacaaaaaaaaaaaaCcaaaaa--- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033604 21 - 77216781 tttgaaaaa--------------caaaacaaaaca----------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946207 21 - 80997621 TTTGAAAAA--------------CAAAACAAAaca----------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002500 21 + 10377808 TTTGAAAAA--------------CAAAACAAAaca----------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889900 21 - 8458610 tttgaaaaa--------------caaaacaaaaca----------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845628 21 + 75148670 TTTGAAAAA--------------CAAAACAAAaca----------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069076 21 + 4244037 TTTGAAAAA--------------CAAAACAAAaca----------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096973 21 + 4569836 tttgaaaaa--------------caaaacaaaaca----------- i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757253 33 + 28711273 TTTGCAGAG-AATAGTTCACAAGAGTGATAGGGC------------ i otoGar3.GL873537 I 18 C 0 s canFam3.chr9 21376295 8 + 61074082 tttacaat-------------------------------------- i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 354451 14 - 852752 ---------------------ttcacaaaagaatg----------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962052 14 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1053760.000000 s hg38.chr17_GL383564v2_alt 44590 131 + 133151 aaaactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaatgaacttctctgagctcatatcataggtaaggatgtaaatccaggtcatttaatttca- s panTro5.chr17 16238489 131 + 83181570 aaaactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaatgaacttctctgagctcatatcataggtaaggatgtaaatccaggtcatttaatttca- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16145955 131 + 83442489 aaaactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaaggaaatgaacttctctgagctcatatcataggtaaggatgtaaatccaggtcatttaatttca- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3980996 131 + 4267968 aaaactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaatgaacttctctgagctcatatcataggtaaggatgtaaatccaggtcatttaatttca- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961447 128 - 2193130 aaacctatgaggtaggcagc---attatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaaagaacttctctgagctcatatcataggtaaggatgtaaatccaggtcatttaatttca- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033625 131 - 77216781 ataactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaacgaacttttctgagctcatatcatatgtaaggatgtaaatcccggtcatttaatttca- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946228 131 - 80997621 ataactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaaccaacttttctgagctcatatcatatgtaaggatgtaaatcccggtcatttaatttca- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002521 131 + 10377808 ataactatgaggtaggcagcaattttatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaacaaacttttctgagctcatatcatatgtaaggatgtaaatcccggtcatttaatttca- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1889921 131 - 8458610 ataactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaacgaacttttctgagctcatatcatatgtaaggatgtaaatcccggtcatttaatttca- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845649 132 + 75148670 ataactatgaggtaggcagcattattattaatttcaattcaagagatgagataaacaagactcaaaaaagggaacgaacttttctgagctcaTGTCATATGTAAGGATGTAAATCCCGGTCATTTAATTTCA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069097 131 + 4244037 ataactatgaggtaggcagcattattatt-atttcaatgcaagagatgagataaacaagactcaagaaagggaacgaacttttctgagctcataTCATATGTAAGGATGTACATCCCGGTCATTTAATTTCA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2096994 131 + 4569836 ataactatgaggtaggcagcattattatt-atttcaattcaagagatgagataaacaagactcaaaaaagggaacgaacttttctgagctcatatcatatgtaaggatgtaaatcccggtcatttaatttca- i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2962066 131 + 8555354 aaaactatgaggtaggcagcattattatg-atttccacttaagagatgagaaaaataagactaaaaaaaggaaattgacttctctgagctcatctcgtaggtaaggatgtaaatccaagtcatttaacttca- i proCoq1.NW_012135969v1 I 14 C 0 s otoGar3.GL873537 22757286 131 + 28711273 ATGGAGGGGGGATAGCCAGCATTATTATG-ATGTCAATTTAAGAGATGAGAAAAATGAGATTGATAAAAGAAAATTCAAGTCCCTGAGCTCATATTCTAGATAAGGAAGTAAATCCGAGTTATTTAATTTCT- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21376303 121 + 61074082 aaaatgatgaggtgggcagc------ata-tttttaatttaaaagatgaggaaaatgggtc----aaaagggaactcacttctctgagctcatgtcatcagtaagaatgtgaactcaggtaggctagcttca- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 354465 105 - 852752 -----tttgaggt-ggcagcatgattatc-atcttctcttgagaaatgaggataacaaaactc--aaaggagaactgacttCTCT-------------------GGATGTGAACCCAGTTCGTTTAATTCCCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35875314 1699 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=28665.000000 s hg38.chr17_GL383564v2_alt 44721 3 + 133151 aat s panTro5.chr17 16238620 3 + 83181570 aat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16146086 3 + 83442489 aat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3981127 3 + 4267968 aat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961575 3 - 2193130 aat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033756 3 - 77216781 aat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946359 3 - 80997621 aat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002652 3 + 10377808 aat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1890052 3 - 8458610 aat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845781 3 + 75148670 AAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069228 3 + 4244037 AAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2097125 3 + 4569836 aat i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2962197 3 + 8555354 aat i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22757417 3 + 28711273 AAT i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 354570 3 - 852752 AAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=245736.000000 s hg38.chr17_GL383564v2_alt 44724 34 + 133151 tcgtg----ttttttGGAgagtgacatcagcaagatga s panTro5.chr17 16238623 34 + 83181570 tcgtg----ttttttGGAgagtgacatcagcaagatga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16146089 34 + 83442489 tcgtg----ttttttGGAgagtgacatcagcaagatga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3981130 34 + 4267968 tcgtg----ttttttGGAgagtgacatcagcaagatga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961578 34 - 2193130 ttgtg----tttttTGGAgagtgacatcagcaagatga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033759 34 - 77216781 ttgtg----ttttttGGAgagtgacatcagcaagatga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946362 34 - 80997621 ttgtg----ttttttGGAgagtgacatcagcaagatga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002655 34 + 10377808 ttgtg----ttttttGGAgagtgacatcagcaagatga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1890055 34 - 8458610 ttgtg----ttttttGGAgagtgacatcagcaagatga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845784 34 + 75148670 TTGTG----TTTTTTGGAgagtgacatcagcaagatga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069231 34 + 4244037 TTGTG----TTTTTTGGAgagtgacatcagcaagatga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2097128 34 + 4569836 ttgtg----ttttttGGAgagtgacatcagcaagatga i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2962200 36 + 8555354 gtgtggtgttttttGG--gagtgacatctgtaagatga i proCoq1.NW_012135969v1 C 0 I 1523 s otoGar3.GL873537 22757420 32 + 28711273 CTGTG----TTTTTTG--gaataatatcagcaagagga i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=505537.000000 s hg38.chr17_GL383564v2_alt 44758 83 + 133151 gggaataagcagccctggaccctcctcaccgtcatgggcacactaattcaataataatactcagataaatt-ttatttgtgaga s panTro5.chr17 16238657 83 + 83181570 gggaataagcagccctggaccctcctcaccctcatggacacactaattcaataataaaactcagataaatt-ttatttgtgaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16146123 83 + 83442489 gggaataagcagccctggaccctcctcaccctcatggacacactaattcaataataaaactcagataaatt-ttatttgtgaga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3981164 83 + 4267968 ggaaataagcagccctggaccctcctcaccgtcatggacacactaattcaataataatactcagataaatt-ttatttgtgaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961612 83 - 2193130 gggaataagcagccctggaccctcctcaccctcatggacacactgattcaataataatactcagataaatt-ttatttgtgaga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30033793 83 - 77216781 gggaataagcagccctggaccctcctcaccatcatggacacactgattcaacaataatactcagataaatt-ttatctgtgaga i rheMac8.chr16 C 0 I 329 s macFas5.chr16 27946396 83 - 80997621 gggaataagcagccctggaccctcctcaccatcacggacacactgattcaacaataatactcagataaatt-ttatctgtgaga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2002689 83 + 10377808 gggaataagcagccctggaccctcctcaccatcatggacacactgattcaacaataatactcagataaatt-ttatctgtgaga i macNem1.NW_012014910v1 C 0 I 294 s cerAty1.NW_012006043v1 1890089 83 - 8458610 gggaataagcagccctggaccctcctcaccatcatggacacactgcttcaacaataatactcagataaatt-ttatctgtgaga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845818 83 + 75148670 gggaataagcagccctggaccctcctcaccatcatggacacactgattcaacaataatactcagataaatt-ttatctgtgaga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069265 83 + 4244037 gggaataagcagccctagaccctcctcaccatcatggacacactgattcaacaataatactcagataaatt-ttatctgtgaga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2097162 83 + 4569836 gggaataagcagccctggaccctcctcaccatcatggacacactgattcaataataatactcagataaatt-ttatttgtgaga i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757452 68 + 28711273 tggaagaggaagccc----------------ccattggtgccctgattgaacaacaatatgcagctacattcccatttatgaga i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=7098.000000 s hg38.chr17_GL383564v2_alt 44841 1 + 133151 a s panTro5.chr17 16238740 1 + 83181570 a i panTro5.chr17 C 0 C 0 s panPan2.chr17 16146206 1 + 83442489 a i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3981247 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961695 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30034205 1 - 77216781 a i rheMac8.chr16 I 329 C 0 s macFas5.chr16 27946479 1 - 80997621 a i macFas5.chr16 C 0 I 329 s macNem1.NW_012014910v1 2003066 1 + 10377808 a i macNem1.NW_012014910v1 I 294 C 0 s cerAty1.NW_012006043v1 1890172 1 - 8458610 a i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845901 1 + 75148670 a i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069348 1 + 4244037 a i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2097245 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757520 1 + 28711273 a i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=378436.000000 s hg38.chr17_GL383564v2_alt 44842 63 + 133151 atctagtaacaatttgagaggctcttgcaccctggatgagtgtaaaaccagccaaatcaaagt s panTro5.chr17 16238741 63 + 83181570 atctagtaacaatttgagaggctcttgcaccctggatgagtgtaaaaccagccaaatcaaagt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16146207 63 + 83442489 atctagtaacaatttgagaggctcttgcaccctggatgagtgtaaaaccagccaaatcaaagt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3981248 63 + 4267968 atctagtaacaatttgagaggctcttgtaccctggatgagtgtaaaaccagccaaatcaaagt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961696 63 - 2193130 atttagtaataatttgagaggctcttgcaccctggatgagtgtaaaaccagccaaatcaaagt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30034206 63 - 77216781 atttagtaagaatttgagaggcttttgcatcctggatgaatgtaaaaccagtcaaatcaaagt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946809 63 - 80997621 atttagtaagaatttgagaggcttttgcatcctggatgaatgtaaaaccagtcaaatcaaagt i macFas5.chr16 I 329 C 0 s macNem1.NW_012014910v1 2003067 63 + 10377808 atttagtaagaatttgagaggcttttgcatcctggatgaatgtaaaaccagtcaaatcaaagt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1890173 63 - 8458610 atttagtaagaatttgagaggcttttgcatcctggatgaatgtaaaaccagtcaaatcaaagt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845902 63 + 75148670 atttagtaagaatttgagaggcttttgcatcctggatgagtgtaaaaccagtcaaatcaaagt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069349 63 + 4244037 atttagtaagagtttgagaggcttttgcatcctggatgagtgtaaaaccagtcaaatcaaagt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2097246 63 + 4569836 atttagtaacaatttgagaggctcttgcatcctggatgagtgtaaaaccagtcaaatcaaagt i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757521 61 + 28711273 attcaataactatttgagatgttcttgc--TGAGgagaattttgaaagcagcaagagaaaaat i otoGar3.GL873537 C 0 I 11116 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=4618466.000000 s hg38.chr17_GL383564v2_alt 44905 754 + 133151 tggtagaaagattttaagatactctatcacaataatccctgctttctcagcatagtatcatatggttaggaggaaatcccc--ctcccagcttctttgcagggagaggaggaaataactggaccatacattcaacattcagatttttctgagagctgccaatgcactagcttctgtcttgcctgtcttagaatgcggatggaatccagaatactccagac--gtctaggagccattgagaacaaagagggtaat------------------tttaactagcatatgaatattcaccacagccctctcccccggccaagttcagagcgagccagtgaaaaaccctgggtcccaggctctccctggagagagaaagagttagacc-tgtgtccaa---------tattctgtcttttctgtggacagtatcagggatgggcttctgtctcacctgtgccagagtgct-atggaaactagccatactcaagatgcctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagtatctctggctgggctgattggtgaaggtcttctccagtacaaggccagtccgtgaagattgggagaggtggctgttttgtctaatgcacagacaccagcacaaagatccaaggataatgaagaaacagggaaatatgtcctaaacaaaggtacaagataaatctcctgaag-ttgaccccaatgaaagagatatacaatttacccgaaagagaatttgaaataaccatatattcaaaa s panTro5.chr17 16238804 757 + 83181570 tggtagaaagattttaagatactctatcacaataatccctgctttctcagcttagtgtcatatagttaggaggaaatccccagctcccagcttctttgcagggagaggaggaaataactggaccatacatccaacattcagatttttctgtgggctgccaacgcactagcttctgtcttgcctgtcttagaatgcggatggaatccagcatactccagac--atctaggagccattgagaacaaagagggtaat------------------tttaacaagcacatgaatattcaccacagccctctcccccggccaagttcagagcgagccagtgaaaaaccctgggtcccaggctctccctggagagagaaagagttagacc-tgtgtccaa---------tattctgacttttctgtggacagtatcagggatgggcttctgtctcacctgtgccagagtgctgatggaaactagccatactcaagatgcctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagtatctctggctgggctgattggtgaagttcttctccagtacaaggccagtccatgaagattgggagaggtggctgttttgtctaatgcacagacaccagcacaaagatccaaggataatgaagaaacagggaaatatgtcctaaacaaaggtacaagataaatctcctgaag-ttgaccccaatgaaagagatatacaatttacctgaaagagaatttgaaataaccatatattcaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16146270 757 + 83442489 tggtagaaagattttaagatactctatcacaataatccctgctttctcagcatagtgtcatatagttaggaggaaatccccagctcccagcttctttgcagggagaggaggaaataactggaccatacatccaacattcagatttttctgtgggctgccaacgcactagcttctgtcttgcctgtcttagaatgcggatggaatccagcatactccagac--atctaggagccattgagaacaaagagggtaat------------------tttaactagcacatgaatattcaccacagccctctcccccggccaagttcagagcgagccagtgaaaaaccctgggtcccaggctctccctggagagagaaagagttagacc-tgtgtccaa---------tattctgacttttctgtggacagtatcagggatgggcttctgtctcacctgtgccagagtgctgatggaaactagccatactcaagatgcctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagtatctctggctgggctgattggtgaagttcttctccagtgcaaggccagtccatgaagattgggagaggtggctgttttgtctaatgcacagacaccagcacaaagatccaaggataatgaagaaacagggaaatatgtcctaaacaaaggtacaagataaatctcctgaag-ttgaccccaatgaaagagatatacaatttacctgaaagagaatttgaaataaccatatattcaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3981311 753 + 4267968 tggtagaaagattttaagatactctatcacaataatccctgctttctcagcatagtgtcatatggttagaaggaaatccccagctcccagcttctttgcagggagaggaggaaataactggaccatacattcaacattcagatttttctgagagctgccaatgcactagcttctgtcttgcctgtcttagaatgcggatggaatccagcatactccagac--atctaggagccattgagaacaaagagggtaat------------------tttaactagcatataaatattcaccacagccctct-ccccggccaagttcagagcgagccagtgaaaaaccctgggtcccaggctctccctggagagag--agagttcgacc-tgtgtccaa---------tattctgccttttctgtggacagtatcagggatgggcttctgtctcacctgtgccagagtgct-atggaaactagccatactcaagatgcctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagtatctctggctgggctgattggtgaaggtcttctccagtacaaggccagtccatgaagattgggagaggtggctgttttgtctaatgcacagacaccagcacaaagatccaaggaaaatgaagaaacagggaaatatgtcctaaacaaaggtacaagataaatctcgtgaag-gtgaccccaatgaaagagatatacaacttacctgaaagagaatttgaaataaccatatattcaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1961759 756 - 2193130 tggtagaaagattttaagatactttattacaataatccctgctttctcagcatagtgtcatatggttaggaggaaatcccaagctcccagcttctttgcagggagagaaggaaagaactggaccatacatccaacattcagatttttctgagggctgccaatgcactagcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atccagaagccatcgagaacaaagagggcaat------------------ttgaactagcacatgaatattcaccacagccctct-ccccggccaagttcagagcaagccagtgaaaaaccctgggtcccaggctctccctggagagagaaagagttagacc-tgtgtccaa---------tattctgacttttctgtggacagtatcagggatgagcttctgtctcacctgtgccagagtgccgttggaaactagccatactcaagatgcctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagtatctctggctgggctg-ttggagaaggtcttctccagtacaaggccagtccatgaagattgggagaggtggctgttttgtctaatgcacagacaccagcacaaagatccaaggataatgaagaaacagggaaatatgtcctaaacaaaggtagaagataaatctcctgaagtttgaccccaatgaaagagatatacaatttacctgaaagagaatttgaaataaccatatattcaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30034269 750 - 77216781 tggtagaaagatgttaagatactctatcacaagaatccctgttttctcagcatagtgtcatatggttaggaagaaagcctcagctcccaacttctttgcagggagagaaggaaataactggaccatacatcgagcattcagatttttctgagggctgccaat------gcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atctaggagccatcgagaacaaagagggcaat------------------ttgaactagcacatgaatattcaccacagccctctcccttggccaagttcagagcgagccagtgaaaaaccctgggtcacaggctctccctggagagagaaagagttagaccttgtgtccaa---------tattctgacttttctgtggacaatatcagggttgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggact-gcacaaaaatttgagaggtccccagaatctctggctgggctgattggtgaaggtcttctcca-tacaaggccagtccatgaagattgggagcagtggctgttttatctaatgaacagacaccagcacaaagatccaaggataatgaagaaacagggacacatgtcctaaacaaaggtacaagatagacctcctgaag-ttgaccccaacgaaagagatacacaattcacctgaaagagaatttgaaataaacatatattcaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27946872 750 - 80997621 tggtagaaagatgttaagatactctatcacaagaatccctgttttctcagcatagtgtcatatggttaggaagaaagcctcagctcccaacttctttgcagggagagaaggaaataactggaccatacatcgagcattcagatttttctgagggctgccaat------gcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atctaggagccatcgagaacaaagagggcaat------------------ttgaactagcacatgaatattcaccacagccctctcccttggccaagttcagagcgagccagtgaaaaaccctgggtcacaggctctccctggagagagaaagagttagaccttgtgtccaa---------tattctgacttttctgtggacaatatcagggttgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggact-gcacaaaaatttgagaggtccccagaatctctggctgggctgattggtgaaggtcttctcca-tacaaggccagtccatgaagattgggagcagtggctgttttatctaatgaacagacaccagcacaaagatccaaggataatgaagaaacagggacacatgtcctaaacaaaggtacaagatagacctcctgaag-ttgaccccaacgaaagagatacacaattcacctgaaagagaatttgaaataaacatatattcaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2003130 766 + 10377808 tggtagaaagatgttaagatactctatcacaagaatccctgttttctcagcatagtgtcatatggttaggaagaaagcctcagctcccaacttctttgcagggagagaaggaaataactggaccatacatcgagcattcagatttttctgagggctgccaatgcactagcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atctaggagccatcgagaacaaagagggcaat------------------ttgaactagcacatgaatattcaccacagccctctcccttggccaagttcagagcgagccagtgaaaaaccctgggtcccaggctctccctggagagagaaagagttagaccttgtgtccaatattctgactattctgacttttctgtggacaatatcagggttgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagaatctctggctgggctgattggtgaaggtcttctcca-tacaaggccagtccatgaagattgggagcagtggctgttttatctaatgaacagacaccagcacaaagatccaaggataatgaagaaacagggacacatgtcctaaacaaaggtacaagatagacctcctgaag-ttgaccccaacgaaagagatacacaattcacctgaaagagaatttgaaataaacatatattcaaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1890236 758 - 8458610 tggtagaaagatgttaagatactctatcacaagaatccctgctttctcagcatagtgtcatatggttaggaagaaagcctcagctcccaacttctttgcagggagagaaggaaataactggaccatacatcgagcattcagatttttctgagggctgccaatgcactagcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atctaggagccattgagaacaaagagggcaat------------------ttgaactagcacatgaatattcatcacagccctctcccctggccaagttcagagcgagccagtgaaaaaccctggatcccaggctctccctggagagagaaaaagttagaccttgtgtccaa---------tattcttacttttctgtggacaatatcagggatgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagaatctctggctgggctgagtggtgaaggtcttctccagtacaaggccagcccatgaagattgggagcagtggctgttttatctaatgaacagacaccagcacaaagatccaaggataatgaagaaacagggaaacatgtcctaaacaaaggtacaagatagatctcctgaag-ttgaccccaatgaaagagatacacaattcacctgaaagagaatttgaaataaacatatattcaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64845965 758 + 75148670 tggtagaaagatgttaagatgctctatcacaagaatccctgctttctcagcatagtgtcacacggttaggaagacagcctcagctcccaacttctttgcagggggagaaggaaataactggaccatacatcgagcattcagatttttctgagggctgccaatgcactagcttctgtcttgcctgtcttagaatgcagatggactccagcatactccagac--atctaggagccattgagaacaaagagggcaat------------------ttgaactagcacatgaatattcatcacagccctctcccctagccaagttcagagcgagccagtgaaaaaccctggatcccaggctctccctggagagagaaagagttagaccttgtgtccaa---------tattcttacttttctgtggacaatatcagggatgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagaatctctggctgggctgattggtgaaggtcttctccagtacaaggccagtccatgaagattgggagcagtggctgttttatctaatgaacagacaccagcacaaagatccaaggataatgaagaaacagggaaacatgttctaaacaaaggtacaagatagatctcctgaag-ttgaccccaatgaaagagatacacaattcacctgaaagagaatttgaaataaacatatattcaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2069412 758 + 4244037 tggtagaaagatgttaagatactctatcacaagaatccctgctttctcagcatagtgtcatatggttaggaagaaagcctcagctcccaacttctttgcagggagagaaggaaataactggaccatacatcgagcattcagatttttctgagggctgccaatgcactagcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atctaggagccattgagaacaaagagggcaat------------------ttaaactagcacatgaatattcatcacagccctctcccctggccaagttcagagcgagccagtgaaaaaccctggatcccaggctctccctggagagagaaagatttagaccttgtgtccaa---------tattcttacttttctgtggacaatatcagggatgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagaatctctggctgggctgattggtgaaggtcttctccagcacaaggccagtccatgaagattgggagcagtggctgttttatctaatgaacagacaccagcacaaagatccaaggataatgaagaaacagggaaacatgtcctaaacaaaggtacaagatagatctcctgaag-ttgaccccaacgaaagagctacacaattcacctgaaagagaatttgaaataaacatatattcaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2097309 750 + 4569836 tggtagaaagattttaagatactctatcacaagaatccctgctttctcagcatagtgtcatatggttaggaagaaagccccagctcccaacttctttgcagggagagaaggaaataactagaccatacattgaacattcagatttttct---agctgccaatgcactagcttctgtcttgcctgtcttagaatgcagatggaatccagcatactccagac--atctaggagccatcgagaacaaagagggcaat------------------ttgaactagcacatggatattcaccacagccctctcccctggccaagttcagagtgagccagtgaaaaaccctgggtcccaggctctccctggagagagaaagagttagaccttgtgttcaa---------tattctgacttttctgtggacagtatcagggatgggcttctgtctcacctgtgctagagtgctgatggaaactagccatactcaacatacctggaggctgcaaag-------atggtggtttggactagcacaaaaatttgagaggtccccagaatctctgactgggctgattggtgaaggtcttctccggtacaaggccagtccatgaagattgggagcagtggctgttttatctaatgaatagacaccagcacaaagatccaaggataatgaagaaatagggaaatatgtcct-----aaggtacaagatagatctcctgaag-ttgactccaatgaaagagatacacatttcacctgaaagagaatttgaaataaacatatattcaaaa i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22768698 702 + 28711273 tggtagaaagattttaa-atgtcctctcacaataatcctta-tctcccaagatagtgtcatatgatcaggaggaaaccccaagctcctagggtatctgtgggtagggaaaaaaaaga-----------------tagtaggatttttctaggagttgctaaggcactagcttctgacttg-ctatcttagagtgtgaattggacccagcatagactagacagacccaggagtcattgagaagaaagatggtattggaactagctcaataacactgaaatagctcaataacactcaccatagatccttcccttggtccagtgcagagtcaggctgtgaaaaactcttgatccctggttctttcaggggagacaaaaagttgaac--tgtgtccaa---------tatcctggattttctggagactgactgagggatggacctctgtcccacccgtgtcagagtgctggtggaacctgg-catactcaagatgcttggaggctgcaaagaacaaatatggtgttttagactagtgcagagagttgagagg-ccccagaaactctggctagacagattggtgtgggtgttttcatgtatgaggccagttcacgaagaatggaacaggtggct-----------------------------------caaggaaagtgaagaaacagagaactatgtcccaaagaaaggTA--------------TGAAG--TAATACCTATGAGTAATATGGAGATCCTTTCAGA---------TAAAGTCACCATGTATACAAAG i otoGar3.GL873537 I 11116 I 365 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1675099.000000 s hg38.chr17_GL383564v2_alt 45659 290 + 133151 tagagaattcaaaataaccatataatcacaggctgggcataatggctcatgcttgtaatcccagcactttgggaggccgaggtgggtagatcacttgaggtcaggagtttgagaccagcctggccaacagggcaaaaccccatctctactaaaaatataaaaattggctgggcacagtggtgcgcaactgtaatcccagctactcaggaggctgaggcatgagaaatgcttgaacccaggaggtggaggttgcagtgagccgaaatcatgccactgcactccatcctggg s panTro5.chr17 16239561 290 + 83181570 tagagaattcaaaataaccatataatcataggctgggcataatggctcatgcttgtaatcccagcattttgggaggccaaggtgggtagatcacttgaggtcaggagtttgagaccagcctggccaacagggcaaaaccccatctctactaaaaatataaaaattggctgggcacagtggtgcgcaactgtaatcccagctactcaggaggctgaggtatgagaaatgcttgaatccaggaggtggaggttgcagtgagccgaaatcatgccactgcactccatcctggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16147027 290 + 83442489 tagagaattcaaaataaccatataatcataggctgggcataatggctcatgcttgtaatcccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttgagaccagcctggccaacagggcaaaaccccatctctactaaaaatataaaaattggctgggcacagtggtgcgcaactgtaatcccagctactcaggaggctgaggtatgagaaatgcttgaatccaggaggtggaggttgcagtgagccgaaatcatgccactgcactccatcctggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3982064 289 + 4267968 tagagaattcaaaataaccatataatcacaggctgggcataatggctcatgcttgtaatcccagcaatttgggaggccgaggtgggtagatcacttgaggtcagcagtttgagaccagcctggccaacagggcaaaaccccatctctactaaaaatataaaaattggctgggtgcagtggtgcgcaactgtaat-ccaactactcaggtggctgaggcatgagaaatgcttgaacccaggaggtggaggttgcagtgagccgaaatcatgccactgcactccatcctggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1962515 290 - 2193130 tagagaattcaaaataaccatataatcataggctgggcataatggctcatgcttgtaatcccagcactttgggaggctgaggtgggtagatcacttgaggtcaggagtttgagaccagcctggccaacagggcaaaaccccatctctactaaaaatataaaaattggctgggtgcagtggtgcgcaactgtaatcccagctactcaggaggctgaggcatgagaaatgcttgaacccaggaggtggaggttgcagtgagcagaaatcatgccactgcactccatcctggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30035019 290 - 77216781 tagagaattcaaaataaccatataatcataggctgggcatagtggctcaagcttgtaatgccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttaagaccagcctggccaacatggcaaaaccccatctcttctaaaaatacaaaagttagctgggtgcagtggtgcgcaactgtaatcctggcttctcaggaggctgaggcatgataaatgcttgaacccaggaggtggaggttgcagtgagccaaaatcatgccactgcactccagcctggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27947622 290 - 80997621 tagagaattcaaaataaccatataatcataggctgggcatagtggctcaagcttgtaatgccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttaagaccagcctggccaacatggcaaaaccccatctcttctaaaaatacaaaagttagctgggtgcagtggtgcgcaactgtaatcccggcttctcaggaggctgaggcatgataaatgcttgaacccaggaggtggaggttgcagtgagccaaaatcatgccactgcactccagcctggg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2003896 290 + 10377808 tagagaattcaaaataaccatatagtcataggctgggcatagtggctcaagcttgtaatgccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttaagaccagcctggccaacatggcaaaaccccatctcttctaaaaatacaaaagttagctgggtgcagtggtgcgcaactgtaatcccggcttctcaggaggctgaggcatgataaatgcttgaacccaggaggtggaggttgcagtgagccaaaatcatgccactgcactccagcctggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1890994 290 - 8458610 tagagaattcaaaataaccatataatcataggctgggcatagtggcttaagcttgtaatcccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttaagaccagcctggccaacatggcaaaaccccatctcttctaaaaatacaaaagttagctgggtgcagtggtgcgcaactgtaatcccggcttctcaggaggctgaggcatgagaaatgcttgaacccaggaggtggaggttgcagtgagccaaaatcatgccactgcactccagcgtggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64846723 290 + 75148670 tagagagttcaaaataaccatataatcataggctgggcatagtggcttaagcttgtaatcccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttaagaccagcctggccaacatggcaaaaccccatctcttctaaaaatacaaaagttagctggatgcggtggtgcgcaactgtaatcccggcttctcaggaggctgaggcatgagaaatacttgaacccaggaggtggaggttgcagtgagccaaaatcatgccactgcactccagcctggg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2070170 290 + 4244037 tagagaattcaaaataaccatataatcataggctgggcatagtggcttaagcttgtaatcccagcactttgggaggccaaggtgggtagatcacttgaggtcaggagtttaagaccagcctggccaacatggcaaaaccccatctcttctaaaaatacaaaagttagctgggtgcggtggtgtgcaactgtaatcctggcttctcaggaggctgaggcatgagaaatgcttgaacccaggaggtggaggttgcagtgagccaaaatcatgccactgcactccagcctggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2098059 290 + 4569836 tagagaattcaaaataaccatataatcataggctgggcatagtggctcaagcttataatcccagcactttgggaggccaaggtgggtagatcccttgaggtcaggagtttgagaccagcctggccaacatggcaaaaccccatctctactgaaaacacaaaagttagctgggtgtggtggtgcgcaactgttatcctggcttctcaggaggctgagacgtgagaaatgcttgaacccaggaggtggaggttgcagtaagccaaaatcatgccactgcactccagcctggg i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e otoGar3.GL873537 22769400 365 + 28711273 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=3939107.000000 s hg38.chr17_GL383564v2_alt 45949 652 + 133151 caacacagcgagactctgtctc-----aacaaaacaaaac---------------aaaaacaaaataaccataattaaagatgctctgcaaggccagaagaacaatacacaaagtgagaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagagggattcaatagcacactaaatcaagcaggagataggatcagtgaactcaaagtcaggccattg-gaaattat----ccagaggaacaaaaagaaaaaagaataaaaaagagtaaagaaagcttaagagatgtatgggacatcatcaggcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaaaaaataatggctcaaaactcctgaaacctgagaaagaacattgacatccagatccaggaagcccagtgtatcccaaataagatgttca--gataaatcaa-agtgatacacattataattgaattgtcagaagtcaaagacaaatagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacctccataaggtaattaatacatttcttagcagaaactttgcaggccggaaggacat s panTro5.chr17 16239851 667 + 83181570 caacacagtgagaatctgtctc-----aacaaaacaaaacaaaacaaaacaaaataaaaacaaaataaccataattaaagatgctctgcaaggccagaagaacaatacacaaagtgagaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagagggattcaatagcacacgaaatcaagcaggagataggatcagtgaactcaaagtcaggccattg-gaaattat----ccagaggaacaaaaagaaaaaagaataaaaaagagtaaagaaagcttaagagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaaaaaataatggctcaaaactcctgaaacctgagaaagaacattgacatccagatccaggaagcccagtgtatcccaaataagatgttca--aataaatcaa-agtgatacacattataattgaattgtcagaagtcaaagacaaagagggaattttgaaagcaacaagagaaaagtga--catcatgtacaagggaacctccataaggtaattaataaatttcttagcagaaactttgcaggccagaaggacat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16147317 665 + 83442489 caacacagtgagaatctgtctc-----aacaaaacaaaacaaaacaaaacaaaataaaaacaaaataaccataattaaagatgttctgcaaggccagaagaacaatacacaaagtgagaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagagggattcaatagcacacgaaatcaagcaggagataggatcagtgaactcaaagtcaggccattg-gaaattat----ccagaggaacaaaaag-aaaaagaataaaaaagagtaaagaaagcttaagagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttatt-aaaaaaataatggctcaaaactcctgaaacctgagaaagaacattgacatccagatccaggaagcccagtgtatcccaaataagatgttca--aataaatcaa-agtgatacacattataattgaattgtcagaagtcaaagacaaagagggaattttgaaagcaacaagagaaaagtga--catcatgtacaagggaacctccataaggtaattaataaatttcttagcagaaactttgcaggccagaaggacat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3982353 667 + 4267968 caacacagtgagactctgtctc-----aaCCaaaccaaacaaaacaaaacaaaaacaaaacaaaataaccataattaaagatgctctgcaaggccagaagaacaatacacaaagtgagaattttcagcaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagagggattcaacagcacactaaatcaagcaggagataggatcattgaactcaaagtcaggcaattg-gaaattat----ccagaggaacaaaaagaaaaaagaataaaaaagagtaaagaaagcttaagagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaaaaaataatggctcaaaactcctgaaacctgagaaagaacattgacatccagatccaggaagcccagtgtatcccaaataagatgttca--aataaatcaa-agtgatacacattataattgaattgtcagaagtcaaagacaaagagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacatccataaggtaattaatacatttcttagcagaaactttgcaggccggaaggacat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1962805 657 - 2193130 caacacagcgagactctgtctc-----aacaaaacaaaacaaaaca---------aaagaaaaaataaccataattaaagatgctctgcaaggccagaagaacaatacacaaagcgagaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagagggattcaatagcacactaaatcaagcagaagataggatcagtgaactcaaagtcaggccattg-gaaattat----ccagaggaacaaaaagaaaaaagaataaaaaagagtaaagaaagcttaagagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagtgagagaaagtttagaaaacttattaaaataaataatggctcaaaactcctgaaacctgagaaagaacattgacatccagatccaggaagcccagtgtatcccaaattagatgctca--aagaaatcaa-agtgatacacattataattgaattgtcagaagtcaaagacaaagaaggaattttgaaagcag-aagagaaaagtga--catcatgtacaagggaacctccataaggcagttaatacatttcttagcagaaactttgcaggccagaaggacat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30035309 648 - 77216781 aaacgcagcgagactctgtctc-----aacaaaacaaaacaaaac----------aaaaacaaaataaccataa-taaagatgctctgcaaggccaggagaacaatacacaaagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaataacacattaaatcaagcaggagataggagcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------atgagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaagaaatcatggctcaaaactcctgaaaccagagaaagaacattgtcagccaaatccaggaagcccagggtatcccaaataagatgccca--aagaaatcaa-agtgatacacattataactgaattgtcagaagtcaaagacaaagagggaattttgaaagaagcaagagaaaagtga--catcatgtacaagggaacctccataaggcaatt-gtaaatttcttagcagaaactttgcaggccagaaggacat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27947912 653 - 80997621 aaacgcagcgagactctgtctcaacaaaacaaaacaaaacaaaac----------aaaaacaaaataaccataa-taaagatgctctgcaaggccaggagaacaatacacaaagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaataacacattaaatcaagcaggagataggagcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------atgagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaagaaatcatggctcaaaactcctgaaaccagagaaagaacattgtcagccagatccaggaagcccagggtatcccaaataagatgccca--aagaaatcaa-agtgatacacattataactgaattgtcagaagtcaaagacaaagagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacctccataaggcaatt-gtaaatttcttagcagaaactttgcaggccagaaggacat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2004186 648 + 10377808 aaacgcagcgagactctgtctc-----aacaaaacaaaacaaaac----------aaaaacaaaataaccataa-taaagatgctctgcaaggccaggagaacaatacacaaagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaataacacattaaatcaagcaggagataggagcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------atgagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaagaaatcatggctcaaaactcctgaaaccagagaaagaacattgtcagccaaatccaggaagcccagggtatcccaaataagatgccca--aagaaatcaa-agtgatacacattataactgaattgtcagaagtcaaagacaaagagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacctccataaggcaatt-gtaaatttcttagcagaaactttgcaggccagaaggacat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1891284 648 - 8458610 aaacacagccagactctgtctc-----aacaaaacaaaacaaaac----------aaaaacaaaataaccataa-taaagatgctctgcaaggcagggggaacaatacacacagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gcaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaataacacactaaatcaagcaggagataggatcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------acaagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaagaaatcatggctcaaaactcctgaaaccagagaaagaacattgtcaaccaaatccaggaagcccagggtatcccaaataagatgccca--aagaaatcca-agtgatacacattataattgaattgtcagaagtcaaacacaaagagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacctctataaggcaatt-gtaaatttcttagcagaaactttgcaggccagaaggacat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64847013 648 + 75148670 aaacacagcgagactctgtctc-----aacaaaacaaaacaaaac----------aaaaccaaaataaccataa-taaagatgctctgcaaggcagggggaacaatacacaaagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gcaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaataacacactaaatcaagcaggagataggatcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------acaagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagagaaagtttagaaaacttattaaaagaaatgatggctcaaaactcctgaaaccagagaaagaacattgtcagccaaatccaggaagcccagggtatcccaaataagatgccca--aagaaatcaa-agtgatacacattataattgaattgtcagaagtcaaagacaaagagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacctccataaggcaatt-gtaaatttcttagcagaaactttgtaggccagaaggacat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2070460 648 + 4244037 aaacacagccagactctgtctc-----aacaaaacaaaacaaaac----------aaaaacaaaataaccataa-taaagatgctctgcaaggcagggggaacaatacacaaagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gcaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaataacacactaaatcaagcaggagataggagcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------acgagatgtatgggacatcatcaagcagaccaacattcacatta-ggaagatccagaaggaga--agagagagataaagttgagaaaacttattaaaagaaatgatggctcaaaactcctgaaaccagagaaagaacattgtcagccaaatccaggaagcccagggtatcccaaataagatgccca--aagaaatcca-agtgatacacattataattgaattgtcagaagtcaaagacaaagagggaattttgaaagcagcaagagaaaagtga--catcatgtacaagggaacctccataaggcaatt-gtaaatttcttagcagaaactttgcaggccagaaggacat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2098349 650 + 4569836 aaacacagcgagactctgtctc-----aacaagacaaaacaaaac----------aaaaacaaaataaccataa-taaagatgctctgcaaggccaggagaacaatacacaaagtgggaattttcaacaaaa-aggcagaaaatacaaaaa-gtaccaaacagaaatcatgctgctgaaaaatacaataactgaatt--gaaaaattcaatagaggaattcaatagcacactaaatcaagcaggagataggatcagtgaactcaaagacaggccattg-gaaattat----ccagaggagcaaaaagaaaaaagaataaaaaagagtgaag-------acgagatgtatgggacatcatcaagcagatcaacattcacatta-ggaagatccagaaggagaagagagagagagaaagtttagaaaacttattaaaagaaatgatggctcaaaactcctgaaaccggagaaagaacattgacagccagatccaggaagcccagggtatcccaaataagatgccca--gagaaatcca-agtgatacacattataactgaattgtcagaagtcaaagacaaagagggaattttgaaagcagaaagagaaaagtgc--catcatgtacaggggaacctccataaggcaatt-gtaaatttcttagcagaaactttgcaggccagaaggacat i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22769765 632 + 28711273 caagacagc----ttttatcct-----tccaatgtgCAGCAGATA----------AAAAATGAG-----------TAGAACATTTCTGcaaagtcaggtgaccagtacacaaagtgag-tttttcaacaaaagagataggaaatccaaaaaggtatcaaacaa-----atgatgttgaagaatagaacaattgaactaaaaaaaatttactaactgggatcaactgcatgataaatcaagcagaagacagcatcagtgaattcaaaggcttgcaactgaaaaattatccagccagaagatctaaggaagaaaggaataagaaggagtaaatacagcttgagagactaatgggatatcatgaagcagagcactatacatattatggaagacccagaaagaga--ggagagagagaaaggacacaaagctt----------acagtggcctcaaactcccaaaatctgaggaagaaaatggatatcccagtgtc-taagccaagtggatcccaaataaggtaaacaacaagaaattaacagtgatataccttataattaagttgttagaagtcaaagagaaat------tcttgaaagcagcaggagtaaagtgattcgtcaggtacaagttaatccccataagacaattaatagatttcttagcagaaactttaca--cctcaaggaact i otoGar3.GL873537 I 365 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=10870096.000000 s hg38.chr17_GL383564v2_alt 46601 2002 + 133151 gggataatatatttaaagtgctga----a--------------------aacaaaccaaccaaccaacaaacaaactgccaaccaagaatatcattcccagtacaattatccttcaaaactgaaggagagatacagacttttatagataaacaaaagctgaggtagttcatcatcgctggacctgccttacaaaaaatgttaaaggaagttctttaagttgga-acaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaatgtaaatatactgataaatatagactactgtaatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttatttatttatttatttatttatttat---ttttgagacagagtttcactcttgtcacccaggctggtatgcagtggtgtgatcttggctcactgcaacctccgcctcccgggttcaagcgattctcctgtctcagcctcctgagtagctgggattataggtgcctgccaccacgcccagctaatatttatatttttagtacagacagagtttctccatgttggccaggatgttctcgaactcctgacctcaggtgatctgccctcctcagcctccaaaagtgctgggattataggtgtgagccaccacacttggccctctac-tataaaatttaaaagataaaagtattaaaaataactataactataaaaataggttaatgcatatgcaatataacaagatgtaaataatgacatcaatacataaaagatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctgaaaacagacagtta------taagttgtttcatataagccctatgatgatcac--aaaaaa--atacctatagaagatacacaaaagaaaaagaaaaaagaataaaaacatatcgatacaaaaatccatgcaacacaaaggaagacagcaagataggaaaagagagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatatta-gtctttccctatcaataatttattgaaatgtaaatgaattaaactctccaatcaaaagacatggagtagctgaatggattttc-aaaaaaccaacaagtactatctacatactatctagaagagactgactttagatttaaagacaatgtataggctg-aaagtgaaggaatggg-aaaaaaaatattccgtacaaatggtaaccaaaagacagcaggatggctgtacttatatatcagacaaaatagtctttaagtcaaaaattgtcacaaaaggcaaagaagaacattatataataatgaaaaaactcaccagg-aagatataacaattgcacacatatatgaacccaacatcagagcacctaatatatatataacaaacattgacagaaccaaagggagaaatggacaatgcaataatagaagaattcagtaactcacttttgataatgaatagaacattcagatagaaaatcaacaaggaaacaacagatttgagcaatactatagaacaaatggacctaacaaataacacgttctatccaatggtagcagaatgcatattctccagtgcatgcggaacattgtccaggataga--------tcatatgttgggtcacaaaacaagtcttaacgaatttaagaggattgaaatcatactaagtatcttttcctaccacaatggaatgaaactagaaaactagaacggaaataagaaaaaaactgaaaaatacacaaatatgtagaaattaaaaa--acatttaaataatcaatgggtcaaagaagaaatcaaaaaggaaattagaaaatatcttgag-acaaatgaaaatgagaacacaacgtatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttt---ata-tatgtatatacataaacctatatctaaacatacacacacgcctaccatgtacctacaaaaatt--------aaaaaattaaaaa s panTro5.chr17 16240518 1985 + 83181570 gggataatatatttaaagtgctgaaaaca--------------------aacaaaccaacaaacaaacaaacaaactgccaaccaagaatatcattcccagcacaattatccttcaaaactgaaggagagatacagacttttatagataaacaaaagctgaggtagttcatcatcactggacctgccttacaaaaaatgttaaaggaagttctttaagttgga-acaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatacattgataaatatagactactgtaatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttattta------------------------ttttgagacagagtttcactcttgtcacccaggctggtatgcagtggtgtgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgtctcagcctcctgagtagctgggattataggcgcctgccaccacgcccagctaatatttatatttttagtacagacggggtttctccatgttggccaggatggtctcgaactcctgacctcaggtgatctgccctcctcagcctccaaaagtgctgggattataggtgtgagccaccacacttggccctctac-tataaaatttaaaagataaaagtattaaaaataactataactataaaaataggttaatgcatgcgcaatataacaagatgtaaataatgacatcaatacataaaagatgtgt--gtgggagaagcaaaagagtagtttttgtacgcagtgaaagttatcagctaaaaacagacagtta------taagttgtttcatataagccctatgatgatcac--aaaaaa--atacctatagaagatacacaaaagaaaaagaaaaaagaataaaaacatatcaatacaaaaatccatgaaacacaaaggaagacagcaagataggaaaagagagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatatta-gtctttccctatcaataatttattgaaatgtaaatgaattaaactctccaatcaaaagacatggagtagctgaatggattttc-aaaaaaccaacaagttctatctacatactatctagaagagactgattttagatttaaagacaatgtataggctg-aaagtgaaggaatggg-aaaaaaaatattccgtacaaatggtaaccaaaagacagctggatggctgtacttatatatcagacaaaatagtctttaagtcaaaaattgtcacaaaaggcaaagaagaacattatataataatgaaaaaattcaccagg-aagatataacaattgcacacatatatgaacccaacatcagagcacctaatatatatataacaaacattgacagaaccaaagggagaaatagacaatgcaataatagaagaattcagtaactcacttttgataatgaatagaacattcagatagaaaatcaacaaggaaacaacagatttgagcaatactatagaacaaatggacctaacaaataacacgttctatccaatggtagcagaatgcatattctccagtgcatgcggaacattctccaggataga--------tcacatgttgggtcacaaaacaagtcttaacgaatttaagaggattgaaatcatactaagtatcttttcctaccacaatggaatgaaactagaaaactagaacggaaataggaaaaaaactgaaaaatacacaaatatgtagaaattaaaaa--acatttaaataatcaatgggtcaaagaagaaatcaaaaaggaaattagaaaatatcttgag-acaaatgaaaatgagaacacaacgtatcaaaatttatgggatgcagcaaaagtagtactaagaggaaagtttt---ata-tatgtatatacataaacctatatctaaacatacacacacgcctaccatgtacctacaaaaatt--------aaaaaattaaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16147982 2008 + 83442489 gggataatatatttaaagtgctgaaaaca--------------------aacaaaccaacaaacaaacaaacaaactgccaaccaagaatatcattcccagcacaattatccttcaaaactgaaggagagatacagacttttatagataaacaaaagctgaggtagttcatcatcactggacctgacttacaaaaaatgttaaaggaagttctttaagttgga-acaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatacattgataaatatagactactgtaatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttatttatttatttatttatttatttatttattttgagacagagtttcactcttgtcacccaggctggtatgcagtggtgtgatctcggctcactgcaacctccgcctcctgggttcaagcgattctcctgtctcagcctcctgagtagctgggattataggcgcctgccaccacgcccagctaatatttatatttttagtacagacggggtttctccatgttggccaggatggtctcgaactcctgacctcaggtgatctgccctcctcagcctccaaaagtgctgggattataggtgtgagccaccacacttggccctctac-tataaaatttaaaagataaaagtattaaaaataactataactataaaaataggttaatgcatgcgcaatataacaagatgtaaataatgacatcaatacataaaagatgtgt--gtgggagaagcaaaagagtagtttttgtacgcagtgaaagttatcagctaaaaacagacagtta------taagttgtttcatataagccctatgatgatcac--aaaaaa--atacctatagaagatacacaaaagaaaaagaaaaaagaataaaaacatatcaatacaaaaatccatgaaacacaaaggaagacagcaagataggaaaagagagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatatta-gtctttccctatcaataatttattgaaatgtaaatgaattaaactctccaatcaaaagacatggagtagctgaatggattttc-aaaaaaccaacaagttctatctacatactatctagaagagactgattttagatttaaagacaatgtataggctg-aaagtgaaggaatggg-aaaaaaaa-attccgtacaaatggtaaccaaaagacagctggatggctgtacttatatatcagacaaaatagtctttaagtcaaaaattgtcacaaaaggcaaagaagaacattatataataatgaaaaaattcaccagg-aagatataacaattgcacacatatatgaacccaacatcagagcacctaatatatatataacaaacattgacagaaccaaagggagaaatagacaatgcaataatagaagaattcagtaactcacttttgataatgaatagaacattcagatagaaaatcaacaaggaaacaacagatttgagcaatactatagaacaaatggacctaacaaataacacgttctatccaatggtagcagaatgcatattctccagtgcatgcggaacattctccaggataga--------tcacatgttgggtcacaaaacaagtcttaacgaatttaagaggattgaaatcatactaagtatcttttcctaccacaatggaatgaaactagaaaactagaacggaaataggaaaaaaactgaaaaatacacaaatatgtagaaattaaaaa--acatttaaataatcaatgggtcaaagaagaaatcaaaaaggaaattagaaaatatcttgag-acaaatgaaaatgagaacacaacgtatcaaaatttatgggatgcagcaaaagtagtactaagaggaaagtttt---ata-tatgtatatacataaacctatatctaaacatacacacacgcctaccatgtacctacaaaaatt--------aaaaaattaaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3983020 1991 + 4267968 gggataatgtatttaaagtgctga----a--------------------aacaaacaaaccaacaaacaaacaaactgccaaccaagaatatcattcccagtacaattatccttcaaaactgaaggagagatacagacttttatagataaacaaaagctgaggtagttcatcatcactggacctgccttacaaaaaatgttaaaggaagttctttaagttgaa-acaaaaggatgttaaacagtaatataaatgcgtgtgaaagtataaaacttgctggtaaatgtaaatatattgataaatatagactactgtaatattataatggtggtaggtaaatcactcttttaattctactataaaa-----ttatttatttatttattta--tatttattttatatttt-----ttttgatacagagtttcactcttgtcacccaggctggtatgcagtggtgtgatctcggctcactgcaacctccgcctcccgggttcaagcgattctcctgtctcagcctcctgagtagctgggattataggcgcctgccaccacgcccagctaatatttatatttttagtacagacgggg-ttctccatgttggccaggatgttctcgaactcctgacctcaggtgatctgccctcatcagcctccaaaagtgctgggattataggtgtgagccaccacacttggccctctac-tataaaatttaaaagataaaagtattaaaaataactataactataaaaataggttaatgcatatgcaatataacaagatgtaaataatgacatcaatacataaaagatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctgaaaacagacagtta------taagttgtttcatataagccctatgatgatcac--aaaaaa--atacctatagaagatacacaaaagaaaaagaaaaaagaataaaaacatatcaatacaaaaatccatgaaacacaaaggaagacagcaagataggaaaagagagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatatta-gtctttccctatcaataatttattgaaatgtaaatgaattaaactctccaatcaaaagacatggagtagctgaatggattttc-aaaaaaccaacaagttctatctacatactatctagaagagactgactttagatttaaagacaatgtataggctg-aaagtgaaggaatggg-aaaaaaaatattccatacaaatggtaaccaaaagacagcaggatggctgtacttatatatcagacaaaatagtctttaagtcaaaaattgtcacaaaaggcaaagaagaacattatataataatgaaaaatttcaccagg-aagatataacaattgcacacgtatatgaacccaacatcagagcacctaatatatatataacaaacattgacagaaccaaagggagagatagacaatgcaataatagaagaattcagtaactcacttttgataatgaatagaacattcagatagaaaatcaacaaggaaacaacagatttgagcactactatagaacaaatggacctaacaaataacacgttctatccaatggtaacagaatgcatattctccagtgcatgcggaacattctccagggtaga--------tcacatattgggtcacaaaacaagtcttaacgaatttaagaggattgaaatcatactaagtatcttttcctaccacagtggaatgaaactagaaaactagaatggaaataggaaaaaaactgaaaaatacacaaatatgtagaaattaaaaa--acatttaaataatcaatgggtcaaagaagaaatc-aaaaggaaattagaaaatatcttgag-acaaatgaaaatgagaacacaacgtatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttt---ata-tatgtatatacgtaaacctatatctaaacatacacacatgcctaccatgtacctacaaaaatt--------aaaaaattaaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1963462 1969 - 2193130 gggataatatatttaaagtgctga----a--------------------aacaaaccaaccaaccaacaaacaaactgccaaccaagaatatcattcccagcacaattatccttcaaaagtgaaggagagat--agacttttatagataagcaaaagctgaggtagttcatcattactggacttgccttacaaaaaatgttaaaggaagttctttaagttgga-acaaaaggatgttaaacagtaatataaatg-atgtgaaagtataaaacttgctggtaaatgtaaatatattgataaatatagaatactgtaatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttattt-------------------------ttttgagacagagtttcactcttgtcacccaggctggtatgcagtggtgtgatctcggctcactgcgacctccatctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattataggtgtctgccaccacgcccagctaatatttatatttttagtacagacagggtttttccatgttggccaggctggtctcgaactcctgacctcaggtgatctgccctcctcagcctccgaaaatgctgggattataggcgtgagccaccacacttggccctctac-tataaaatttaaaagataaaagtattaaaaataactataactataaaaataggttaatgcatacacaatataacaagatgtaaataatgacatcaatacataaaagatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctaagaatagacagtta------taagttgtttcatagaagccctatgatgatcac---aaaaa--atacctatagaagatacac------aaaagaaaaaagcataaaaacatatcaatacaaaaatccatgaaacacaaaagaagacagcaagataggaaaagagaaacaaaagaactctgagaaagacaaaagaatgaacaaaatggcaatattaggtctttccctatcaataatttattgaaatgtaaatgaattaaactctccaatcaaaagacatggagcagctgaatggattttt-ataaaaccaacaagttctatctacatactatctagaagagactgactttagatttaaagacaacgtgtaggctg-aaagtgaaggaatggg-aaaaaaat-attccgtacaaatggtaaccaaaagacagcaagatggctgtacttatatatcagacaaaatagtctttaagtcaaaaactgtcacaaaaggcaaagaagaacattatataataatgaaaaaattcactggg-aagatataacaattacacaca-atatgaacccaacatcagagcatctaatatatataaaacaaacattgacagaaccaaagggagaaatagacaatgcaataatagaagaattcagtaactcacttttgataatgaatagaacattcagatagaaaatcaacagggaaataacagacttgagcaatactatagaacaaatgggcctaacaaataaaatgttctatccaatggtagcagaatacatcttctccagtgcacacggaacattctccaggataga--------tcacatgttgggtcacaaaacaagtcttaatgaatttaagaggattgaaatcatactaagtatcttttcctaccacaatggaatgaaactagaaaactagaatggaaataggaaaaaaactgaaagatacacaaatatgtagaaattaaaaaacacatttaaataatcagtgggtcaaagaagaaatcaaaaaggaaattagaaaatatcttgag-acaaatgaaaatgggaacgcaacatatcaaaatgtatgggatgcagcaaaaacagtactaagaggaaagtttt---ata-tatgtatatatctaaac--atatctaaacatacacacatgcctactatgtacctacaaaaatt--------aaaaaattaaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30035957 2024 - 77216781 gggataatatatttaaaatgctga----a----aaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaactgccaaccaagaatatcattcccagcgcaattatccttcaaaactgaaggagagataaagacttttatagataaacaaaagctgaggtcgttcatcatcactgaacctgccttacaaaaaatgttaaaggaagttgtttaatttttacacaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacataaatatattgataaatatagaatactataatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttatttatttatttatttatt----------tattgagacagagtttcactcttgttacccaggctggtatgcagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagccattcccctgtctcagcctcctgagtagctgggattataggcacctgccaccacgcccagctaatatttgtatttttagtacagacggggtttctccatgttggccaggctggtctcaaactcctgatctcaggtgatctgccctccttggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctacttataaaatttagaagataaaagtattaaaaataactatgactataaaaataggttaatggatacacaatataacaagatgtaaatcatgataccaatacataaaatatgtgt--gtgggagaagcaaaagagtagtttttgtatccagtgaaagttatcagctaaaaatagacagttataactataagttgtttcatataagccctatgatgaccac-aaaaaaa------ctacagaagatacacaaaag--aaaaaaaaaagaataaaaacatag-aatacaagaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatgttaggtctttccctatcaatactttattgaaatgt-aatgaataaagctctccaatccaaagacatggagtagctgaatggattttc-aaaaaaccgacaagctctatctacatgctatctagaagagactgactttagatttaaagacaatgtataggcagaaaagtgaaggaatggg-gaaaaaaatattccgtacaaatggtgaccaaaagacagcaggatggctgtacctctatattagacaaaatagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacataataatgaaaaaattcaccagg-aagacataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacactgacagaaccaaagggagaaatagacaatgcaataatagaagaatttagtaactcacttttgataatgaatggaacattcagatagaaaatcaacaaggaaacaacagacttgaacaatactatagaacaaatggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacatgttgggtcacaaaacaaatcttaacgaatttaagaggattgaaatcatactaagtgtcttttcctacaacaatggaatgaaactagaaaactagaatggaaataag-aaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaagagaaattagaaaatatcttgag-acaattgaaaatgagaacacagcacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttttatataatatatatgtatataaacttatatgtaaacatacacacacgcctactatgtacctacaaaacttaaaattt-aaaaaattaaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27948565 2023 - 80997621 gggataatatatttaaaatgctga----a--------aaccaaccaaccaaccaaccaaccaaccaaccaaccaactgccaaccaagaatatcattcccagcgcaattatccttcaaaactgaaggagagataaagacttttatagataaacaaaagctgaggtcgttcatcatcactgaacctgccttacaaaaaatgttaaaggaagttgtttaatttttacacaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatatactgataaatatagaatactataatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttatttatttatttatttatt----------tattgagacagagtttcactcttgttacccaggctggtatgcagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagccactcccctgtctcagcctcctgagtagctgggattataggcacctgccaccacgcccagctaatatttgtatttttagtacagacggggtttctccatgttggccaggctggtctcaaactcctgatctcaggtgatctgccctccttggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctac-tataaaatttagaagataaaagtattaaaaataactataactataaaaataggttaatggatacacaatataacaagatgtaaatcatgacaccaatacataaaatatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctaaaaatagacagttataactataagttgtttcatataagccctatcatgaccac-aaaaaaa--aaacctacagaagatacacaaaag--aaaaaaaaaagaataaaaacatag-aatacaagaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatgttaggtctttccctatcaatactttattgaaatgt-aatgaataaagctctccaatccaaagacatggagtagctgaatggattttc-aaaaaaccgacaagctctatctacatgctatctagaagagactgactttagatttaaagacaatgtataggcagaaaagtgaaggaatggg-gaaaaaaatattccgtacaaatggtgaccaaaagacagcaggatggctgtacctctatattagacaaaacagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacataataatgaaaaaattcaccagg-aagacataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacactgacagaaccaaagggagaaatagacaatgcaataatagaagaatttagtaactcacttttgataatgaatggaacattcagatagaaaatcaacaaggaaacaacagacttgaacaatactatagaacaaagggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacatgttgggtcacaaaacaaatcttaacgaatttaagaggattgaaatcatactaagtgtcttttcctacaacaatggaatgaaactagaaaactagaatggaaataag-aaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaagagaaattagaaaatatcttgag-acaattgaaaatgagaacacagcacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttttatataatatatatgtatataaacttatatgtaaacatacacacacgcctactatgtacctacaaaacttaaaattt-aaaaaattaaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2004834 2015 + 10377808 gggataatatatttaaaatgctga----a--------aaccaaccaaccaaccaaccaaccaaccaaccaaccaactgccaaccaagaatatcattcccagcgcaattatccttcaaaactgaaggagagataaagacttttacagataaacaaaagctgaggtcgttcatcatcactgaacctgccttacaaaaaatgttaaaggaagttgtttactttttacacaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatatattgataaatatagaatactataatactataatggtggtaggtaaatcactcttttaattctactataaa--------atttatttatttatttatttatttatttatt----------tattgagacagagtttcactcttgttacccaggctggtatgcagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagccattcccctgtctcagcctcctgagtagctgggattataggcacctgccaccacgcccagctaatatttgtatttttagtacagacggggtttctccatgttggccaggctggtctcaaactcctgatctcaggtgatctgccctccttggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctac-tataaaatttagaagataaaagtattaaaaataactataactataaaaataggttaatggatacacaatataacaagatgtaaatcatgacaccaatacataaaatatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctaaaaatagacagttataactataagttgtttcatataagccctatgatgaccac-aaaaaaa--aaacctacagaagatacacaaaag--aaaaaaaaaagaataaaaacatag-aatacaagaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatgttaggtctttccctatcaatactttattgaaatgt-aatgaataaagctctccaatccaaagacatggagtagctgaatggattttc-aaaaaaccgacaagctctatctacatgctatctagaagagactgactttagatttaaagacaatgtataggcagaaaagtgaaggaatggg-gaaaaaaatattccgtacaaatggtgaccaaaagacagcaggatggctgtacctctatattagacaaaatagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacataataatgaaaaaattcaccagg-aagacataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacactgacagaaccaaagggagaaatagacaatgcaataatagaagaatttagtaactcacttttgataatgaatggaacattcagatagaaaatcaacaaggaaacaacagacttgaacaatactatagaacaaatggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacaggttgggtcacaaaacaaatcttaacgaatttaagaggattgaaatcatactaagtgtcttttcctacaacaatggaatgaaactagaaaactagaatggaaataag-aaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaaaagaaattagaaaataccttgag-acaattgaaaatgagaacacagcacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttttatataatatatatgtatataaacttatatgtaaacatacacacacgcctactatgtacctacaaaacttaaaattt-aaaaaattaaaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1891932 2011 - 8458610 gggataatatatttaaaatgctga----a------------aaccaaccaaccaaccaaccaaccaaccaacaaactgccaaccaagaatatcattcccagcacaattatccttcaaaactgaaggagagataaagacttttatagataaacaaaagctgaggtcgttcatcatcactgaacctgccttacaaaaaatgttaaaggaagttgtttaatttttacacaaaaggatgttaaacagtaacataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatatattgataaatatagaatactataatactataatggtggtaggtaaatcactcttttaattctactataaaatttatttatttatttatttatttatttatttatttatt----------ta------------ttCACTCTtgtcacccaggctggtatgcagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagccattctcccatctcagcctcctgagtagctgggattataggcacctgccaccacgcccagctaatatttgtatttttagtacagacggggtttctccatgttggccaggctggtctcaaactcctgatctcaggtgatctgccctcctcggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctac-tataaaatttagaagataaaagtattaaaaataactataactataaaaataggttaatggatacacaatataacaagatgtaaatcatgacaccaatacataaaatatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctaaaaatagacagttataactgtaagttgtttcatataagccctatgatgaccac-aaaaaaaaaaaacctacagaagatacacaaaag--aaaaaaaaaagaataaaaacatag-aatacaagaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaatgaacaaaacggcaatgttaggtctttccctatcaatactttattgaaatgtaaatgaataaaactctccaatccaaagacatggagtagctgaatggattttc-aaaaaaccgacaagctctatctacatgctatctagaagagactgactttagatttaaagacaatgtataggcagaaaagtgaaggaatgggaaaaaaaaaaattccgtacaaatggtgaccaaaagacagcaggatggctgtacctctgtattagacaaaatagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacataataatgaaaaaattcaccagg-aagacataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacactgacagaaccaaagggagaaatagacaatgcaataatagaagaattcaataactcacttttgataatgaatggaacattcagatagaaaatcaacaaggaaacaacagacttgaacaatactatagaacaaatggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacatgttgggtcacaaaacaagtcttaacaaatttaagaggattgaaatcatactaagtggcttttcctacaacaatggaatgaaactagaaaactagagtggaaataag-aaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaaaagaaattagaaaatatcttgag-acaattgaaaatgagaacacagcacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttttatataatatatatgtatataaacttatgtgtaaacatacacacacgcctactatgtacctataaaacttaaaattt-aaaaaattaaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64847661 2022 + 75148670 gggataatatatttaaaatgctga----a----aaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaactgccaaccaagaatatcattcccagcacaattatccttcaaaactgaaggagagataaagacttttatagataaacaaaagctgaggtagttcatcatcactgaacctgccttacaaaaaatgtcaaaggaagttgtttaatttttacacaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatatattgataaatatagaatactataatactataatggtggtaggtaaatcactcttttaattctactataaa----atttatttatttatttatttatttatttatttatt----------tattgagacagagtttcactcttgtcacccaggctggtatgcagtgctgtgatctcggctcactgcaacctctgcctcccaggttcaagccattctcccgtctcagcctcctgagtagctgggattataggcacctgccaccacgcccagctaatatttgtatttttagtacagacggggtttctccatgttggccaggctggtctcaaactcctgatctcaggtgatctgccctcctcggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctac-tataaaatttagaagataaaagtattaaaaataactataactataaaaataggttaatggatatataatataacaagatgtaaatcatgacaccaatacataaaatacgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctaaaaatagacagttataactgtaagttgtttcatataagccctatgatgaccac--aaaaaa--atacctacagaagatacacaaaag----aaaaaaaagaataaaaacatgt-aatacaaaaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatgttaggtctttccctatcaatactttattgaaatgt-aatgaataaagctctccaatccaaagacatggagtagctgaatggattttcaaaaaaactgacaagctctatctacatgctatctagaagagattgactttagatttaaagacaacgtataggcagaaaagtgaaggaatggg-aaaaaaaatattccatgcaaatggtgaccaaaagacagcaggatggctgtaccactatattagacaaaatagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacacaataatgaaaaaattcaccaggaaagacataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacactgacagaaccaaagggagaaatagacaatgcaataataaaagaattcagtaactcacttttgataatgaatggaacattcagatagaaaatcaacaaggaaacaacagacttgaacaacactatagaacaaatggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacatgttgggtcacaaaacaagtcttaacaaatttaagaggattgaaatcatactaagtgtcttttcctacagcaatggaatgaaactagaaaactagaatggaaataag-aaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaaaagaaattagaaaatatcttgag-acaattgaaaatgagaacacagcacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttttatataatatatatgtatataaacttatatgtaaacatacacacacgcctactatgtacctacaaaacttaaaattt-aaaaaattaaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2071108 2016 + 4244037 gggataatatatttaaaatgctga----aaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaactgccaaccaagaatatcattcccagcacaattatccttcaaaactgaaggagtgataaagacttttatagataaacaaaagctgaggtcgttcatcatcactgaacctgccttacaaaaaatgttaaaggaagttgtttaatttttacacaaaagggtgttaaacagtaacataaatgcatgtgaaagtataaaacttgctggtaaacgtaaatatattgataaatatagaatactataatactataatggtggtaggtaaatcactcttttaattctactataaa----atttatttatttatttatttatttatt------------------------GAGAgagtttcactcttgtcacccaggctggtatgcagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagccattctcccgtctcagcctcctgagtagctgggattataggcacctgccaccacgcccagctaatatttgtatttttaggacagacggggtttctccatgttggccaggctggtctcaaactcctgatctctggtgatctgccctcctcggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctac-tataaaatttagaagataaaagtattaaaaataactataactataaaaataggttaatggatacacaatataacaagatgtaaatcatgacaccaatacataaaatatgtgt--gtgggagaagcaaaagagtagtttttgtatgcagtgaaagttatcagctaaaaatagacagttataactgtaagttgtttcatataagccctatgatgaccacaaaaaaaa--aaacctacagaagatacacaaaag---aaaaaaaaagaataaaaacatag-aatacaagaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaattaacaaaacggcaatgttaggtctttccctatcaatactttattgaaatgtaaatgaataaaactctccaatccaaagacatggagtagctgaatggattttc-aaaaaaccgacaagctctatctacatgctatctagaagagactgattttagatttaaagacaatgtataggcagaaaagtgaaggaatgggaaaaaaaaaaattccgtacaaatggtgaccaaaagacagcaggatggctgtacctctatattagacaaaatagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacataataatgaaaaaattcaccagg-aagccataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacactgacagaaccaaagggagaaatagacaatgcaataatagaagaattcaataactcacttttgataatgaatggaacattcagatagaaaatcaacaaggaaacaacagacttgaacaatactatagaacaaatggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacatgttgggtcgcaaaacaagtcttaacgaatttaagaggattgaaatcatactaagtgtcttttcctacaacaatggaatgaagctagaaaactagaatggaaataag-aaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaaaagaaattagaaaatatcttgag-acagttgaaaatgagaacacagcacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttttatataatatatatgtatataaacttatatgtaaacatgcacacacgcctactatgtacctacaaaacttaaaatttaaaaaaattaaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2098999 1979 + 4569836 gggataatatatttaaagtgctga----a--------------------aaccaaccaaccaaccaatcaacaaactgccaaccaagaataccattcccagcacaattatccttcaaaactgaaggagagataaagacttttatagataaataaaagctgaggtagttcatcatcactggacctgccttacaaaaaatgttaaaggaagttgtttaatttgga-acaaaaggatgttaaacagtaatataaatgcatgtgaaagtataaaacttgctggtaaacataaatatattgataaatatagaatactgtaatactataatggtggaaggtaaatcactcttttaattctactacaaa----------------------------attaattaatt----------tattgagacagagtttcactcttgtcacccaggctggtatgcagtggtgtgatctcggctcactgcaacctctgactcccaggttcaagccattctcctgtctcagcctcctgagtacctgggattacaggcacctgccaccacgcccagctaatatttgtatttttagtacagacggggtttctccatgttggccaggctggtctcaaattcctgatctcaggtgatttgccctccttggccttccaaagtgctgggattacaggcatgagccaccacacttggccctctac-cataaaatttaaaagataaaagtattaaaaataactataactataaaaataggttaatggatacacaatacaacaagatacaaatcacaacaccaatacataaaatatgtattggtgggagaagcgaaagagtagtttttgtgtgcagtgaaagttatcagctaaaaatagacagttataactctaagttgtttcatgtaagccctatgatgaccac--aaaaaa--atacctacagaagatacacaaaag---aaaaaaaaagaataaaaacatat-aatacaaaaatccatgaaacacaaaggaagtcagcaagagaggaaaag-gagacaaaagaactctgagaaagacaaaagaattaacaaaatggcaatattaggtctttccctgtcaatactttattgaaatgtaaatgaataaaactctccagtccaaagacacggagtagtcgaatggattttc-agaaaaccaacaagctctatctacgtgctgtctagaagagactgactttagatgtaaagataatgtatagcctggaaagtgaaggaatgggaaaaaaattcattccgtacaaatggtaaccaaaagacagcacgatggctatacctctatatcagacaaaacagtccttaaggcaaaaactgtcacaaaaggcaaagaagaacattacataataatgaaaaaattcaccagg-aagacataacaat---------atatgaacccaacatcagagcacctaacatatataaagcaaacattgacagaaccaaagggagaaatagacaatgcaataatagaagaattcaataactcacttttgataatgaatagaacatgcagatagaaaatcaacaaggaaacaacagacttgaacaatgctatagaacaaatggacctaacaaacaaaatgttctatccagtggtagcagaatacatattctccagtgcacacagaacattctccaggatagagaatgttctcacatgttgggtcacaaaacaagtcttaatgaatttaagaggattgaaatcatactaagtgtcttttcctacaacaatggaatgaaactagaaaactagaatggaaatcagaaaaaaactgaaaaatacacaaatatgtagaaattaaaaaacacatttaaataatcaatgagtcaaagaaaaaatcaaaaaagaaattagaaaatatcttgagaacaattgaaaatgagaacacaatacatcaaaatttatgggatgcagcaaaagcagtactaagaggaaagtttt-------tgtatatgtatataaacttatatgtaaacatacacacacacctactatgtacctacaaaacttaaaattt-aaaaaattaaaaa i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e otoGar3.GL873537 22770397 0 + 28711273 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=643146.000000 s hg38.chr17_GL383564v2_alt 48603 114 + 133151 agataaagaacaaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaaattttattatgatacttacgataaaacttagagc----------agaaataaataaaaa s panTro5.chr17 16242503 110 + 83181570 agataaagaacaaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaaattttattatga----cacgataaaacttagagc----------agaaataaataaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16149990 110 + 83442489 agataaagaacaaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaaattttattatga----cacgataaaacttagagc----------agaaataaataaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985011 110 + 4267968 agat----aacaaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaaattttattatgatacttacgataaaacttagagc----------agaaataaataaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1965431 111 - 2193130 agataaagaacaaactaag-cccaaagttagcagcaggaaggctataataacactttttgctctaagttttattatgatacttatgataaaacttagagc----------agaaataaataa--- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30037981 114 - 77216781 agataaagaacaaactaag-ctcaaagttagcagcaagaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagc----------ataaataaataaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27950588 114 - 80997621 agataaagaacaaactaag-ctcaaagttagcagcaagaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagc----------ataaataaataaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2006849 114 + 10377808 agataaagaacaaactaag-ctcaaagttagcagcaagaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagc----------ataaataaataaaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1893943 114 - 8458610 agataaagaacaaactaag-ctcaaagttagcagcaagaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagc----------ataaataaataaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64849683 114 + 75148670 agataaagaacaaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagc----------ataaataaataaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073124 114 + 4244037 agataaagaacaaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagc----------agaaataaataaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2100978 124 + 4569836 agataaagaataaactaag-ctcaaagttagcagcaggaaggatataataacactttttgctctaagtgttattatgatacttatgataaaacttagagcagaaataaatagaaataaataaaaa i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22770397 76 + 28711273 agaaaaagaaaaaactaagcctgaaggttagaataaggatggaaata---------------------------------------ataaagattagtat----------agaaataagcaaaga i otoGar3.GL873537 C 0 T 12823 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=637393.000000 s hg38.chr17_GL383564v2_alt 48717 123 + 133151 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaac--agagt---ttttttgaaagacacagaaaatttacaaacctctagatagactaagaaaaaaagaggaaacactcaaataaataaaatcg s panTro5.chr17 16242613 123 + 83181570 tagagactagaaaaacaatag-------c-aaagaatcaatgaaac--agagt---ttttttgaaagacacagaaaatttacaaacctctagatagactaagaaaaaaagaggaaacactcaaataaataaaatcg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150100 123 + 83442489 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaac--agagt---ttttttgaaagacacagaaaatttacaaacctctagatagactaagaaaaaaagaggaaacactcaaataaataaaatcg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985121 121 + 4267968 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaac----agt---ttttttgaaagacacagaaaatttacaaacctctagatagactaagaaaaaaagaggaaacactcaaataaataaaatcg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1965542 120 - 2193130 -agagactagaaaaacaatag-------c-aaaaaataaatgaaac----agt---ttttttgaaagatacagaaaatttacaaacctctagacagactaagaaaaaaagaggaaacactcaaataaataaaatca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038095 116 - 77216781 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaactaagaga--tttttttgaaagataaagaaactttacaaacctctagatagact------aaaagaggaaa----caaatacataaaatca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27950702 115 - 80997621 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaactaagaga---ttttttgaaagataaagaaactttacaaacctctagatagact------aaaagaggaaa----caaatacataaaatca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2006963 116 + 10377808 tagagactagaaaaacaatag-------caaaaaaatcaatgaaactaagaga---ttttttgaaagataaagaaaatttacaaacctctagatagact------aaaagaggaaa----caaatacataaaatca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894057 115 - 8458610 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaactaagaga---ttttttgaaagataaagaaaatttacaaacctctagatagact------aaaagaggaaa----caaatacataaaatca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64849797 115 + 75148670 tagagactagaaaaacaatag-------c-aaaaaatcaatgaagctaagaga---ttttttgaaagataaagaaaatttacaaacctctagatagact------aaaagaggaaa----caaataaataaaatca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073238 115 + 4244037 tagagactagaaaaacaatag-------c-aaaaaatcaatgaaactaagaga---ttttttgaaagataaagaaaatttacaaacctctagatagact------aaaagaggaaa----caaatacataaaatca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101102 120 + 4569836 tagagactagaaaaacaatag-------c-aaaaaatcaatgtaactaagaga---ttttttgaaagataaagaaaatttacaaacctctagatagactaag-aaaaaagaggaaa----caaattaataaaatca i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757650 132 + 28711273 taggaactagaaaaagaacaaactaagcc-ccaaagttaa--aaactaagggttttttttttgaaagataaataaaattcacaaacatttagctagactaggaaaaaaagaaagaagactcaactaagt-aaatca i otoGar3.GL873537 T 12823 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e canFam3.chr9 21376424 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=23959.000000 s hg38.chr17_GL383564v2_alt 48840 3 + 133151 aag s panTro5.chr17 16242736 3 + 83181570 aag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150223 3 + 83442489 aag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985242 3 + 4267968 aag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1965662 3 - 2193130 aag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038211 3 - 77216781 aag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27950817 3 - 80997621 aag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007079 3 + 10377808 aag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894172 3 - 8458610 aag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64849912 3 + 75148670 aag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073353 3 + 4244037 aag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101222 3 + 4569836 aag i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757782 3 + 28711273 aaG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21376424 3 + 61074082 aaa i canFam3.chr9 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 354573 0 - 852752 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1486696.000000 s hg38.chr17_GL383564v2_alt 48843 185 + 133151 atgTGCTTTTCTGCTCCTCTCATGCTGCTTTTGAAATTCAGATGCAGCCTTCTTTAAATGATTCGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCCCTGCGGAACAAAGGCAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT s panTro5.chr17 16242739 185 + 83181570 atgTGCTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCAGCCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCTCTGCAGAACAAAGGCAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150226 185 + 83442489 atgTGCTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCAGCCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCTCTGCAGAACAAAGGCAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985245 185 + 4267968 atATGCTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGACGCAGCCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCTCTGCAGAACAAAGGCAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1965665 185 - 2193130 atgTGCTTTTCTGCTCCTCCCATGCTGCCTTTGAAATTCAGATGCATCCTTCTTTAAATGATTTGTATTGTGTTCTACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCTATGCAGAACAAAGGAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038214 185 - 77216781 atgTACTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCATTCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCCATGCAGAACAAAGGAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27950820 185 - 80997621 atgTACTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCATTCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCCATGCAGAACAAAGGAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007082 185 + 10377808 atgTACTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCATTCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCCATCCAGAACAAAGGAAAGGCAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894175 185 - 8458610 atgTACTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCATTCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTCCCATGCAGAACAAAGGAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64849915 185 + 75148670 atgTACTTTTCTGCTCCTCTCATGCTGCCTTGGAAATTCAGATGCATCCTTCTTTACATGATTCGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCCATGCAGAACAAAGGAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073356 185 + 4244037 atgTACTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCATTCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCCATGCAGAACAAAGGAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101225 185 + 4569836 atgTACTTTTCTGCTCCTCTCATGCTGCCTTTGAAATTCAGATGCATCCTTCTTTAAATGATTTGTATTGTGTTCCACAAATAATCTTTTGGGACT-TCTTTCTGAAA--CATGACTTTGTTTCTATGCAGAACAAAGCAAAGGTAGAGTGACAGGGAAAAGAA-GTGAGGTAG-GGAAGGCTATTCTGT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757785 185 + 28711273 GCACGCTTTTCTGCTTCTCTAATGCTGCCTTTGAATTCTGGACACATCCTTCTTGAAATGATTTATTTTGTATCCCACAAAGAATATTTGGGGACTCTTTCTCTGAAC--CATCATTTCATTTCTATTCAGAATAAAGGGAAGACAGCATGACAGGGGAA--AA-GAGAGGAAGAGGCAGGCTACTCTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21376427 186 + 61074082 gtgtgcttttctgttaccttcatacttcctttGAAATCTAGACATATCCTTCAT-AAATGATGTATATTGTGTTGCACAAATAATTTTTTGGAACT-TCTGTCTGAAGCTCATGATTTTGTTTCTGTGTAGAACAAAGGACAGATAAAGTGACAAGGAATAGAG-ATGAAATGA-GGAGGGCTACTTCAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 354573 185 - 852752 GTATACTTTTCTGCCTCTCCCATGCTGCCTTGGAAATCTGGACACATTCTTCCT-AAGTGACTTCTACTGTGTTCCATAAATAATCTTCTGGAACT-TCTTTCTGAAC--CATGACTTCATTTCTGTGCAGAGCAAAGGACAGACAGAGAGCCAGAGAAAGGAAGGCGAGGTGG-GAGAGGCTATttttt i dasNov3.JH570468 C 0 I 251 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1528699.000000 s hg38.chr17_GL383564v2_alt 49028 196 + 133151 GAAGAGTGATTATTGGGCAATAGAGAGGCTCCCTAGGTTATGCAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGAT----AGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAATCTGCATTCTCATGGGCACTGTGGCTTGTCCTGGAAGCATCTCAGGCTGGCATAGTCATACCTCTAGG s panTro5.chr17 16242924 196 + 83181570 GAAGAGTGATTATTGGGCAATAGAGAGGCTCCCTAGGTTATGCAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGAT----AGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAATCTGCATTCTCATGGGCACTGTGGCTTGTCCTGGAAGCATCTCAGGCTGGCATAGTCATACCTCTAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150411 196 + 83442489 GAAGAGTGATTATTGGGCAATAGAGAGGCTCCCTAGGTTATGCAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGAT----AGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAATCTGCATTCTCATGGGCACTGTGGCTTGTCCTGGAAGCATCTCAGGCTGGCATAGTCATACCTCTAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985430 196 + 4267968 GAAGAGTGATTATTGGGCAATAGAGAGGTTCCCTAGGTTATGCAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGAT----AGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAATCTGCATTCTCATGGGCACTGTGGCTTGTCCTGGAAGCATCTCAGGCTGGCATAGTCATACCTCTAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1965850 196 - 2193130 GAAGAGTGATTATTGGGCAATAGAGAGGCTCCCTAGGTTATGCAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGAT----AGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGAAAATCTGCATTCTCATGGGCACTGTGGCTTGTCCTGGAAGCATCTCAGGCTGGCATAGTCATACCTCTAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038399 200 - 77216781 TAAGAGTGATTACTGGGCAATAGAGAGGCTCCCTAGGTTATGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAGCATCTTAGGCTGGCAGAGTCATACCTCTAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951005 200 - 80997621 TAAGAGTGATTACTGGGCAATAGAGAGGCTCCCTAGGTTATGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAGCATCTTAGGCTGGCAGAGTCATACCTCTAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007267 200 + 10377808 TAAGAGTGATTACTGGGCAATAGAGAGGCTCCCTAGGTTATGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAGCATCTTAGGCTGGCAGAGTCATACCTCTAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894360 200 - 8458610 TAAGAGTGATTACTGGGCAATAGAGAGGCTCCCTAGGTTATGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAGCATCTTAGGCTGGCAGAGTCATACCTCTAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850100 200 + 75148670 TAAGAGTGATTACTGGGCAATAGAGAGGCTCCCTAGGTTATGGAAGAGTCAAAAGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAGCATCTTAGGCTGGCAGAGTCATACCTCTAGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073541 200 + 4244037 TAAGAGTGATTACTGCGCAATAGAGAGGCTCCCTAGGTTGTGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTATCAGAGACAGTG-TCTACTT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAGCATCTTAGGCTGGCAGAGTCATACCTCTAGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101410 200 + 4569836 TAAGAGTGATTACTGGGCAATAGAGAGGCTCCCTAGGTTATGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGGTGATAGAGAGAAGCACACTTACCAGAGACAGTG-TCTACCT-GTAGGGACAACAGAGTAAAGCTGCATTCTCATGGGCACTGTGGTTTGTCCTGGAAACATCTTAGGCTGGCAGAGTCATACCTCTAGG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22757970 197 + 28711273 TAAGGTTCATTTTTG-GTAGAGGTGGGACTCTCTAGGGTATGGAAGAGTCAAAGGGTAACTG---GATCCCAGAGAGGACAGAGAGAAGCACACTCATTAGAGACAATGTTCTCTTC-TTAGGGACAACAGATTCAAGCTGCATTCCTATGGGCACTGCGAATTGTCTTGGGAAGATCTAAGGCTGGCATA---ATACCTCTAAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21376613 199 + 61074082 TAAGATTCTTTGTTGGGCAATAGGAAGACTCCCAAGAGTTTGGAAGTGTCCAAAAGTATCTATCTGATCCCAGAGGTGATAGAGAGGTGCACACTCATCGGAGATGATG-CCCACTTCTTAGGGACAACAGAGTGAAGGTGCATTCTCATGGG--TTGTGACTTGGTGTG---CCCTCTCAGGTGGGCAGAGTCACACCTCTAGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 355009 198 - 852752 GGAGATTAATTGTTGGGTAAAGGGGAGATGCCGAAGGGTTTGGAAGAGTCTAAGGGTAACCT---GATGCCAAGAGTGATGTGGAAGTGTACACTTATCAGAGATGGCA-TCCAGTTCTTAGGGACGATGG---TCAACTGCATTCTCATAGGCATTGCGACTTGCTCTGGGATCCTCTCAGGCTGGCACAGTCACACCTCTAGG i dasNov3.JH570468 I 251 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1549781.000000 s hg38.chr17_GL383564v2_alt 49224 223 + 133151 --AGAGTTAATACTCT-AGAAAGAGGAACAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAATTTGAGAAAAAGCCACCATGGATACAAAGATACCTCTGAGCACCCTTGCTCCAATTTTCGTTTCTTGGTGAGTCTGCAGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGCTCCAGACTGTTTCCAGCATATTTTTTCTTCTA s panTro5.chr17 16243120 223 + 83181570 --AGAGTTAATACTCT-AGAAAGAGGAACAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAATTTGAGAAAAAGCCACCATGGATACAAAGATACCTCTGAGCACCCTTGCTCCAATTTTCATTTCTTGGTGAGTCTGCAGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGCTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150607 223 + 83442489 --AGAGTTAATACTCT-AGAAAGAGGAACAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAATTTGAGAAAAAGCCACCATGGATACAAAGATACCTCTGAGCACCCTTGCTCCAATTTTCATTTCTTGGTGAGTCTGCAGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGCTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985626 223 + 4267968 --AGAGTTAATACTCT-AGAAAGAGGAACAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTAAGAAAAAGCCACCATGGATACAAAGATACCTCTGAGCACCCTTGCTCCAATTTTCATTTCTTGGTGAGTCTGCAGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGCTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966046 222 - 2193130 --AGAGTTAATACTCT-AGGAAGAGGAGCAAGTCTAGAAATAAGATGGTAGAAATTTCCAGAGAATTTGAGAAAAAGCCACCATGGGTACAAAGATACCTCTGAGCA-CCTTGTTCCAATTTTCATTTCTTGGTGAGTCTGCGGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACCCTCACTGCTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038599 222 - 77216781 --AGAGTTAATACTCT-AGAAAGAGGAGCAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTGAGAAAAAGCCACTATGGATACAAAGATATCTCTGAGCA-CCTTGTTCCAATTTTCATTTCCTGGTGAGTCTGCGGTATTATGCTTC--CTATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951205 222 - 80997621 --AGAGTTAATACTCT-AGAAAGAGGAGCAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTGAGAAAAAGCCACTATGGATACAAAGATATCTCTGAGCA-CCTTGTTCCAATTTTCATTTCCTGGTGAGTCTGCGGTATTATGCTTC--CTATTCATGCTTCAGTGCTGCCAGCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007467 222 + 10377808 --AGAGTTAATACTCT-AGAAAGAGGAGCAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTGAGAAAAAGCCACTATGGATACGAAGATATCTCTGAGCA-TCTTGTTCCAATTTTCATTTCCTGGTGAGTCTGCGGTATTATGCTTC--CTATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894560 222 - 8458610 --AGAGTTAATACTCT-AGAAAGATGAGCAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTGAGAAAAAGCCACTATGGATACAAAGATATCTCTGAGCA-CCTTGTTCCAATTTTCATTTCTTGGTGAGTCTGCGGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850300 222 + 75148670 --AGAGTTAATACTCT-AGAAAGAGGAGCAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTGAGAAAAAGCCACCATGGATACAAAGATATCTCTGAGCA-CCTTGTTCCAATTTTCATTTCTTGGTGAGTCTGCAGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCGTCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073741 222 + 4244037 --AGAGTTAATACTCT-AGAAAGAGGAGCAAGTCTAGAAATAAGATGATAGAAATTGCCAGAGAACTTGAGAAAAAGCCACCATGGATACAAATGTATCTCTGAGCA-CCTTGTTCCAATTTTCATTTCTTGGTGAGTCTGCGGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101610 222 + 4569836 --AGAGTTAATACTCT-AGAAAGAGGAGCAAGTCTAGAAATAAGATGATAGAAATTTCCAGAGAACTTGAGAAAAAGCCACCATGGATACAAAGATATCTCTGAGCA-CCTTGTTCCAATTTTCATTTCTTGGTGAGTCTGTGGTATTATGCTTC--ATATTCATGCTTCAGTGCTGCCATCTGAACTCTCACTGTTCCAGACTGTTTCCAGCATATTTTTTCTTCTA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22758167 217 + 28711273 --GCTATT-----TCT-AGAGTGTGCTAAAGTTCTAGAAATGAGCTGAGAGAAATTTCTAGAGACTTTGAGATAAGGTCACCATGGATACAAAGATGGATGTGAGTA-CCTCATTCTGGTTTTTCCTTCTTGGTGAATCTGAGGTATTATGCTTC--ATATTTAGGCTTAACACTTCCCACCTGGACTATTATGCTGCTGGACTGTTCTCAACAAAATTTTCCTTGTA i otoGar3.GL873537 C 0 I 12794 s dasNov3.JH570468 355207 222 - 852752 GGGTGTTTAATGCTCTCAGAAAGAGGAATAAGTCTAGGAATAAGGTGTGAGAAGTTTCCAGAGACTTTGAGATAAGGTCACCATGGATACAAGGCTATCTCTGAGAA-TCTCATCCTGGTTTTCTTT-----GTGAGTGTGAGGTATTACGCTTCATATATTTATGCTTCAACACTGCCTCCTGAACTCTCATTCTTGTGGACCATTCCCAATGTAATTTCCCTTCCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=70810.000000 s hg38.chr17_GL383564v2_alt 49447 10 + 133151 GATATTTCTA s panTro5.chr17 16243343 10 + 83181570 GATATTTCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150830 10 + 83442489 GATATTTCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985849 10 + 4267968 GATATTTCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966268 10 - 2193130 GATATTTCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038821 10 - 77216781 GATATTTCTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951427 10 - 80997621 GATATTTCTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007689 10 + 10377808 GGTATTTCTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894782 10 - 8458610 GATATTTCTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850522 10 + 75148670 GATATTTCTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073963 10 + 4244037 GATACTTCTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101832 10 + 4569836 GATATTTCTA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22771178 10 + 28711273 GATATGtctt i otoGar3.GL873537 I 12794 I 128 s dasNov3.JH570468 355429 10 - 852752 GATATTGCtt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=115014.000000 s hg38.chr17_GL383564v2_alt 49457 15 + 133151 CTCTTGCTCATCTTT s panTro5.chr17 16243353 15 + 83181570 CTCTTGCTCATCTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150840 15 + 83442489 CTCTTGCTCATCTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985859 15 + 4267968 CTCTTGCTCATCTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966278 15 - 2193130 CTCTTGCTCATCTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038831 15 - 77216781 CTCTTGCTCATCTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951437 15 - 80997621 CTCTTGCTCATCTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007699 15 + 10377808 CTCTTGCTCATCTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894792 15 - 8458610 CTCTTGCTCATCTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850532 15 + 75148670 CTCTTGCTCATCTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073973 15 + 4244037 CTCTTGCTCATCTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101842 15 + 4569836 CTCTTGCTCATCTTT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22771316 15 + 28711273 ctctttcttttcttt i otoGar3.GL873537 I 128 C 0 s dasNov3.JH570468 355439 15 - 852752 ctctttttcatattt i dasNov3.JH570468 C 0 I 222 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=288526.000000 s hg38.chr17_GL383564v2_alt 49472 45 + 133151 AGAGAGGCTGTTGCTTTAGTACAAGTTGGCAAATTTTTTAatttt s panTro5.chr17 16243368 45 + 83181570 AGAGAGGCTGTTGCTTTAGTACAAGTTGGCAAATTTTTTAatttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150855 45 + 83442489 AGAGAGGCTGTTGCTTTAGTACAAGTTGGCAAATTTTTTAatttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985874 45 + 4267968 AGAGAGGCTGTTGCTTTAGCACAAGTTGGCAAATTTTTAAatttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966293 45 - 2193130 AGAGAGGCTGTTGCTTTAGTACAAGTTGGCAAATTTTTTAatttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038846 45 - 77216781 AGAGAGGCTGTTGCTTCAGTACAAGTTGGCAAACTTTTTAatttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951452 45 - 80997621 AGAGAGGCTGTTGCTTCAGTACAAGTTGGCAAACTTTTTAatttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007714 45 + 10377808 AGAGAGGCTGTTGCTTCAGTACAAGTTGGCAAACTTTTTAatttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894807 45 - 8458610 AGAGAGGCTGTTGCTTCAGTACAAGTTGGCAAACTTTTTAatttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850547 45 + 75148670 AAAGAGGCTATTGCTTCAGTACAAGTTGGCAAACTTTTTAatttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2073988 45 + 4244037 AGAGAGGCTGTTGCTTCAGTACAAGTTGGCAAACTTTTTAatttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101857 45 + 4569836 AGAGAGGCTGTTGCTTCACTACAAGTTGGCAAACTTTTTAatttt i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22771331 45 + 28711273 AGAGAGACTGTTTCTTCACTGCCTATTGGCAAAGTTTTTTTTTTT i otoGar3.GL873537 C 0 T 12671 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 355454 222 - 852752 I e canFam3.chr9 21376812 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=1448384.000000 s hg38.chr17_GL383564v2_alt 49517 257 + 133151 agggctttgtggacactatagtctctgtcacaactacacaactctgccactgtagcacaaaagcag-ccatatacaatagctaaacaaatgggcatggctgtgttccattaaaactttatttactgccggacgcattggctcacgcctgtaatcccagcacttcgggaggccgaggcgggcggatcacgagttcaggagttcaagagcagcctggccaacatggtgaaaccccatttctgctaaaaacacaaaaatta s panTro5.chr17 16243413 257 + 83181570 agagctttgtggacactatagtctctgtcacaactacacaactctgccactgtagcacaaaagcag-ccatatacaatagctaaacaaatgggcatggctgtgttccattaaaactttatttactgccgggcgcattggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagttcaagagcagcctggccaacatggtgaaaccccatttctgctaaaaacacaaaaatta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16150900 257 + 83442489 agagctttgtggacactatagtctctgtcacaactacacaactctgccactgtagcacaaaagcag-ccatatacaatagctaaacaaatgggcatggctgtgttccattaaaactttatttactgccgggcgcattggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcatgaggtcaggagttcaagagcagcctggccaacatggtgaaaccccatttctgctaaaaacacaaaaatta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3985919 257 + 4267968 agggctttgtggacactatagtctctgtcacaactacacaactctgccactgtagcacaaaagcag-ccatatacaatagctaaacaaatgggcatggctgtgttctattaaaactttatttactgccgggcgcattggctcacgcctgtaatcccagcactttgggaggccgaggcgggctgatcacgaggtcaggagttcaagagcagcctggccaacatggtgaaaccccatttctgctaaaaacacaaaaatta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966338 257 - 2193130 agggctttgtggaccctatagtctctgtcacaactacacaactctgccactgtagcacaaaagcag-ccatatacaatagctaaacaaatgggcatggctgtgttccattaaaactttatttacTgctgggtgaggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatttctactaaaaatacaaaaatta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30038891 252 - 77216781 agggctttgtggaccctatag--tctgtcacaactacacaactctgccactgtagcacaaaagcag-ccacatacaatagctaaacaaatgggcatggctgtgttccattaaaactgtatttactgctgggcggggtggctcacgcctgtaatcccagcactttaggaggccgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaacatggtgaaatcccgtttctact---aattcaaaaatta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951497 252 - 80997621 agggctttgtggaccctatag--tctgtcacaactacacaactctgccactgtagcacaaaagcag-ccacatacaatagctaaacaaatgggcatggctgtgttccattaaaactgtatttactgctgggcggggtggctcacgcctgtaatcccagcactttaggaggccgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaacatggtgaaatcccgtttctact---aatacaaaaatta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2007759 253 + 10377808 agggctttgtggaccctatag--tctgtcacaactacacaactctgccactgtagcacaaaagcagcccacatacaatagctaaacaaatgggcatggctgtgttccattaaaactgtatttactgctgggcggggtggctcacgcctgtaatcccagcactttaggaggccgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaacatggtgaaatcccgtttctact---aatacaaaaatta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1894852 255 - 8458610 agggctttgtggaccctatag--tctgtcacaactacacaactctgccactgtagcacaaaagcag-ccacatacaatagctaaacaaatgggcatggctgtgttccattaaaactgtatttactgctgggcggggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaacatggtgaaatcccgtttctactaaaaatacaaaaatta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850592 255 + 75148670 agggctttgtggaccttatag--tctgtcacaactacacaactctgccactgtagcacaaaagcag-ccacatacaatagttaaacaaatgggcatggctgtgttccattaaaactgtatttactgctgggcggggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaatatggtgaaatcccgtttctactaaaaatacaaaaatta i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074033 255 + 4244037 agggctttgtggaccctatag--tctgtcacaactacacaactctgccactgtagcacaaaagcag-ccacatacaatagctaaacaaatgggcatggctgtgttccattaaaactgtatttactgctgggcggggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaacatggtgaaatcccatttctactaaaaatacaaaaatta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2101902 255 + 4569836 agggctttgtggaccctatag--tctgtcacaactacacaactctgccactgtagcacaaaagcag-ccatatacaatagctaaacaaatgggcacggctgtgttccattaaaactttatttactgctgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcatgaagtcaggagttcaagaccagcctggccaacatggtgaaatcctgtttctactaaaaatacaaacatta i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 355454 222 - 852752 I e canFam3.chr9 21376812 0 + 61074082 C e otoGar3.GL873537 22771376 12671 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I e saiBol1.JH378271 1783751 1187 + 3513951 I e calJac3.chr5 46061368 1169 - 159171411 I a score=752579.000000 s hg38.chr17_GL383564v2_alt 49774 134 + 133151 gccgggtgtggtggcgggcacct-----gtaatcccagctactcggggggctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagtga s panTro5.chr17 16243670 134 + 83181570 gccgggtgtggtggcgggcacct-----gtaatcccagctactcggggggctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagtga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151157 134 + 83442489 gccgggtgtggtggcgggcacct-----gtaatcccagctactcggggggctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagtga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986176 134 + 4267968 gccgggtgtggtggcgggcacct-----ataatcccagctacttggggggttgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagtga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966595 104 - 2193130 gctggacgtggtggcgggtgcct-----gtaatcccagctacttgggaggctgagct---------------gcccaggaggtg----------------gagatcgtgccactgcactccagcctgggcgacagagcaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039143 134 - 77216781 gccaggcgtggtggtgggcgcct-----gtaatcccagctactcagggagctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactctagcctgggcaacagagtga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951749 134 - 80997621 gccaggcgtggtggtgggcgcct-----gtaatcccagctactcagggagctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactctagcctgggcgacagagtga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008012 114 + 10377808 gccaggcgtggtggtgggcgcct-----gtaatccc--------------------cagata-attgcttgaacccgggaggtggaggttgcagtgagctgagattgtgccactgcactctagcctgggcgacagagtga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895107 134 - 8458610 gccaggcgtggtggtgggcgcct-----ataatcccagttactcagggagctgaggcagata-attgcttgaacccgggaggtagaggttgcagtgagctgagattgtgccactgcactctagcctgggcgacagagtga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850847 134 + 75148670 gccaggcgtggtggtgggtgcct-----gtaatcccagctactcagggagctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagctgagatcgtgccactgcactctagcctgggcgacagagtga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074288 134 + 4244037 gccaggcgtggtggtgggcgcct-----gtaatcccagctactcagggagctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagctgagatcgtgccactgcactctagcctgggcgacagagtga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102157 134 + 4569836 actgggcgtggtggtgggcgcct-----gtaatcccagatacttggggagctgaggcagata-attgcttgaacccgggaggtggaggttgcagtgagctgagatcttgccacagcactctagcctgggtgacagagtga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062537 104 - 159171411 gtcaagtgtggtggcttatgcct-----gtaattccagcactttgggaggccaaggagggcagatcgcctgaggtcaggagttcaaga-------------------------------ccagcttggccaatatgatga i calJac3.chr5 I 1169 C 0 s saiBol1.JH378271 1784938 109 + 3513951 gccaggtgtggtggctcacgccttgtgagtaatcccagcactttgggaggccaaggagggcagattgcctgaggtcaggagttcaaga-------------------------------ccagcctggccaacatgatga i saiBol1.JH378271 I 1187 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 355454 222 - 852752 I e canFam3.chr9 21376812 0 + 61074082 C e otoGar3.GL873537 22771376 12671 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I a score=125325.000000 s hg38.chr17_GL383564v2_alt 49908 39 + 133151 gactctgtctc--aaaaaaaaaaaaaca-------gaaaacaaacaaa s panTro5.chr17 16243804 39 + 83181570 gactctgtctc--aaaaaaaaaaaaaca-------gaaaacaaacaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151291 37 + 83442489 gactctgtctc----aaaaaaaaaaaca-------gaaaacaaacaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986310 41 + 4267968 gactctgtctcaaaaaaaaaaaaaaaca-------gaaaacaaacaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966699 47 - 2193130 gactctgtctc-aaaaaaacagaaaacaaacaaacaaaaaTAAACAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039277 31 - 77216781 gactctgtctc--------aaaaaaaca-------gaaa--aaacaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951883 33 - 80997621 gactctgtctc--------aaaaaaaca-------gaaaacaaacaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008126 33 + 10377808 gactctgtctc--------aaaaaacca-------gaaaacaaacaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895241 33 - 8458610 gactctgtctc--------agaaaaaca-------gaaaacaaacaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64850981 33 + 75148670 gactctgtctc--------aaaaaaaca-------gaaaacaaacaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074422 33 + 4244037 gactctgtctc--------aaaaaaaca-------gaaaacaaacaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102291 33 + 4569836 gactctatctc--------aaagaaaca-------gaaaacaaacaaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062641 24 - 159171411 aaccccatctc----tactaaaaaaacc-------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785047 9 + 3513951 aacctcgtc--------------------------------------- i saiBol1.JH378271 C 0 C 0 s dasNov3.JH570468 355676 18 - 852752 ggctgtgttcc--------aagaaaa---------------------- i dasNov3.JH570468 I 222 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C e otoGar3.GL873537 22771376 12671 + 28711273 T e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I a score=66087.000000 s hg38.chr17_GL383564v2_alt 49947 11 + 133151 CAAAAACTTTA s panTro5.chr17 16243843 11 + 83181570 caaaaacttta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151328 11 + 83442489 caaaaacttta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986351 11 + 4267968 caaaaacttta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966746 11 - 2193130 CAAAACCTTTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039308 11 - 77216781 caaaaacttta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951916 11 - 80997621 caaaaacttta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008159 11 + 10377808 caaaaacttta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895274 11 - 8458610 caaaaacttta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851014 11 + 75148670 caaaaacttta i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074455 11 + 4244037 caaaaacttta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102324 11 + 4569836 caaaaacttta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062665 4 - 159171411 ------tttt- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785056 3 + 3513951 -------ttt- i saiBol1.JH378271 C 0 C 0 s otoGar3.GL873537 22758705 11 + 28711273 ttaaaacttta i otoGar3.GL873537 T 12671 C 0 s dasNov3.JH570468 355694 5 - 852752 ------cttta i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C e aotNan1.NW_018502359v1 6944471 2678 - 7032639 I e cebCap1.NW_016107730v1 1832669 1321 + 1920343 I a score=690684.000000 s hg38.chr17_GL383564v2_alt 49958 66 + 133151 TTTACAA-AAATTCAGCAGGGTAAACTTGACGTGTGGGCTGCCATTTGCAGATGCCCTCTTTTAGGT s panTro5.chr17 16243854 66 + 83181570 tttacaa-aaattcagcagggtaaacttgacgtgtgggctgccgtttgcagatgccctCTTTTAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151339 66 + 83442489 tttacaa-aaattcagcagggtaaacttgacgtgtgggctgccgtttgcagatgccctCTTTTAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986362 66 + 4267968 tttacaa-aaattcagcagggtaaacttgacgtgtgggctgccgtttgcagatgccctCTTTTAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966757 66 - 2193130 TTTACAA-AAATTCAGCAGGGTAAACTTGACGTGTGGACTGCCGTTTGCAGATGCCGCCTTTTAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039319 66 - 77216781 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgccccctTTTAGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951927 66 - 80997621 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgccccctTTTAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008170 66 + 10377808 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgccccctTTTAGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895285 66 - 8458610 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgccccctTTTAGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851025 66 + 75148670 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgccccctTTTAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074466 66 + 4244037 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgccccctTTTAGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102335 66 + 4569836 tttacaa-aaatgcagcagggtaaacttgacctgtgggctgctgtttgcagatgccccctTTTAGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062669 64 - 159171411 tttacaa-aaatgcagca-ggtgaacttgatctgtgggctgttgtttgcagaggccc-ctTTTAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785059 65 + 3513951 tttacaa-aaatgcaGCAGGGTGAACTTGACCTGTGGGCTGTTGTTTGCAGATGCCC-CTTTTAGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1833990 65 + 1920343 tttacaa-aaatgcagcagggtgaacctgacctgtgggctgttgtttgcagatgccc-ctTTTAGGC i cebCap1.NW_016107730v1 I 1321 C 0 s aotNan1.NW_018502359v1 6947149 65 - 7032639 tttacaa-aaatgcagcagggtgaacttgacctgtgggctgttgtttgcagatgccc-ctTACAGGC i aotNan1.NW_018502359v1 I 2678 C 0 s otoGar3.GL873537 22758716 67 + 28711273 tttgtaagaaatgctgcaggcctcacttggccaatgggccatgggtttctgatctcCCCCTTTAGTG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 355699 56 - 852752 tttacaa-aaccagag--------atcctgcctgtggtccacagtttgccaat--ccTCTTTTAGTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22036792 3587 - 122082543 I e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C a score=2259636.000000 s hg38.chr17_GL383564v2_alt 50024 200 + 133151 ATACTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACGAATAGT----------AAGGCTCAGGATCATTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACATGGATGAATGTGGGA s panTro5.chr17 16243920 200 + 83181570 ATATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCATTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACATGGATGAATGTGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151405 200 + 83442489 ATATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAGTAGT----------AAGGCTCAGGATCATTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACATGGATGAATGTGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986428 199 + 4267968 ATATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCATTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACATGGATGAATGT-GGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966823 200 - 2193130 ATATTCCCATCCATTCCATTGGTTTCCATTTTACTTTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTCTCTCCATGTGTTGGCAAGTTCCCTAAACCTCAACCAATAGT----------AAGGCTCAGGATC-CTTCAGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACATGGATGAATGTGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039385 199 - 77216781 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGCGAACACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACAT-GATGAATGTGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951993 199 - 80997621 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGCGAACACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACAT-GATGAATGTGGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008236 199 + 10377808 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAAGATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGGGAACACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACAT-GATGAATGTGGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895351 199 - 8458610 ATATTCCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAATATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGCGAACACAGGTTG--AGTTTCTGCTGTA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACAT-GATGAATGTGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851091 199 + 75148670 ATATTCCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCGTTGTTTTCAGTCTCTCCACGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGTGAACACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACAT-GATGAATGTGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074532 199 + 4244037 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGCGAACACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACTT-GATGAATGTGGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102401 199 + 4569836 ATATTCCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGCGAATACAAGTTG--AGTTTCTTCTATA----------AAAA---------------------CAAAT----TG-----AATGCTGAAACAT-GGTGAATGTGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062733 201 - 159171411 ATATTTCCATCCATTCCATTGGTTTCCATTTTAC-TTT---------CAACCATGAACATGCAATTGTTTTTAATCTCGCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAACAGT----------AAGGTTCAGGATCCTTTCAGCTAATACAGGTTG--AGAATGCAATAAAAAACAAAAACAAAA---------------------AAAAT----TG-----AATACTGAGACACGGATGAACGTGGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785124 199 + 3513951 ATATTCCCATCCATTCCGTTGGTTTCCATTTTAC-TTTCTCATTTCCCAACCAAGAACGTGCAATTGTTTTCAATCTCTCCACATGTTGGCAAGTTCCCTAAACCCCAACCAACAGT----------AAGA-TCAGGATCCTTTCAGCTAATACAGGTTG--AGTTTCTGCTATA----------AAAG---------------------CAAGT----TG-----AATACTGAGACATGGAAGAACGTGGGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834055 200 + 1920343 GTATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCCCGACCATGAACATGCAATTGTTTTCAATCTCTCCACGTGTTGGCAAGTTCCCTAAACCCCACCCAATAGT----------AAGGCTCAGGATCCTTTCAGCTAATACAGGTTG--AGTTTCTGCTACA----------AAAA---------------------CAAGT----TG-----AATACTGAGACATGGATGAACATGGGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947214 200 - 7032639 GTATTCCCATCCATTCCGTTGGTTTCCATTTTAC-TTTCTCATTTCCCAACCATGAACATGCAATTGTTTTCAATCTCTCCACGTGTTGGCAAGTTCCCTAAAACCCAACCAATAGT----------AAGGCTCAGGATCCTTTCAGCTAATACAGGTTG--AGTTTCTGCTATA----------AAAA---------------------CAAGT----TG-----AATACTGAGACATGGATGAACGTGGGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22758783 217 + 28711273 CTATTTCCATTCATCCACCTGGTTCCTATTTTGT-GTCCTCACTTTCTAACCATGAACATACAACTGTTTTCAATTTTTCCACAGGTTGCCAAATTCCCTAAACCCCAACCAATAGC----------AATGTTCAGTATCCTGGCCGCTAATAGAGAATG--AGTCCCTGGTATA----------AGAATGGTCCGGTATAAGGACCAGTTGAAC----TG-----AATGCTAAATCATGGATGGACTT---- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040379 201 - 122082543 atccatccatccatccatccaGATTTCATTTCTC-ATT-TCATTTCTTAAGCACCAACATACAACTGTTTCTAGTCTGTCTATCTG----CACACTTCCCAAGGTGCAGCCAGTACC----------AAGTATCAGCCTGCTTGCAACTCATCCAGAGTGGTAGTATCCTCTGTA----------AGAA---------------------AGGTTTCCCTG-----GATGCTGAGATGTGGGTAGATTTGAGA i mm10.chr11 I 3587 C 0 s dasNov3.JH570468 355755 210 - 852752 CTATTCTCACCCA----GTTGGTTTCCATCTCAC-TTTCTTATTTCTCAGTCACAAAAACGCCATTATTTCCAATCCTCCCATGTATCAGCAAATTCTCTAAATCCTAGTCAATATTCCCACTGAGAAAAGCTCAGAATCCTCATA-CTAATACAGGACA--ATTTTCTCCTGTA----------AGGA---------------------CAAGT----TAATCTCAACACTGAAACATGGGTAGACAGGGAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e canFam3.chr9 21376812 0 + 61074082 C a score=77586.000000 s hg38.chr17_GL383564v2_alt 50224 7 + 133151 GGAAAGA s panTro5.chr17 16244120 7 + 83181570 GGAAAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151605 7 + 83442489 GGAAAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986627 7 + 4267968 GAAAAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967023 7 - 2193130 GGAAAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039584 7 - 77216781 GGAAAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952192 7 - 80997621 GGAAAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008435 7 + 10377808 GGAAAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895550 7 - 8458610 GGAAAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851290 7 + 75148670 GGAAAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074731 7 + 4244037 GGAAAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102600 7 + 4569836 GGAAAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062934 7 - 159171411 AGAAAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785323 7 + 3513951 GGAAAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834255 7 + 1920343 GGAAAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947414 7 - 7032639 GGAAAGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22759000 2 + 28711273 -----GT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040580 7 - 122082543 GGAGAGG i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 355965 0 - 852752 C e canFam3.chr9 21376812 0 + 61074082 C a score=479840.000000 s hg38.chr17_GL383564v2_alt 50231 46 + 133151 GCTACTTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC s panTro5.chr17 16244127 46 + 83181570 GTTACTTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151612 46 + 83442489 GTTACTTGGGAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986634 46 + 4267968 GTTACTTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967030 46 - 2193130 GTTACCAGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039591 46 - 77216781 GTTACCTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952199 46 - 80997621 GTTACCTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008442 46 + 10377808 GTTACCTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895557 46 - 8458610 GTTACCTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851297 46 + 75148670 GTTACCTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074738 46 + 4244037 GTTACCTGGAAAAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102607 46 + 4569836 GTTACCTGGAAGAGTAACT-CTCAAAGCTCTCTCTCAGAGCTCTCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062941 46 - 159171411 GTTACCTGGAAGAGGAACT-CTCAAAGCTCTCTCTCAGAGCTGTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785330 46 + 3513951 GTTACCTGGAAGAGGAACT-CTCAAAGCTCTCTCTCAAAGCTGTCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834262 46 + 1920343 GTTACCTGGAAGAGGAACT-CCCAAAGCTCTCTCTCAAAGCTGTCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947421 46 - 7032639 GTTACCTGGAAGAGGAACT-CTCAAAGCTCTCTCTCAAAGCTGTCTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22759002 36 + 28711273 TCCACTTGGAACAGTGAATACCCAAAACTCTATTTT----------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040587 32 - 122082543 CCTA--TGGAAGGATGTTT-GCCAAA------------AGTTCCTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21376812 44 + 61074082 GCCACCTGGGAGACTGTTCACTCCAGACTCTTTCCAGGGAATCT--- i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I e dasNov3.JH570468 355965 0 - 852752 C a score=371087.000000 s hg38.chr17_GL383564v2_alt 50277 33 + 133151 TCTGGGGAGAAAGAACAG-TGGCGGAAACTCCTG s panTro5.chr17 16244173 33 + 83181570 TCTGGGGAGAAAGAACAG-TGGCGGAAACTCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151658 33 + 83442489 TCTGGGGAGAAAGAACAG-TGGCGGAAACTCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986680 33 + 4267968 TCTGGGGAGAAAGAACAG-TGGCGGAAACTCCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967076 33 - 2193130 TCTGGGGAGAAAGAACAG-GGGCAGAACCTCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039637 33 - 77216781 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952245 33 - 80997621 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008488 33 + 10377808 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895603 33 - 8458610 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851343 33 + 75148670 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074784 33 + 4244037 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102653 33 + 4569836 TCTGGGGAGAAAGAACAG-TGGCGGAACCTCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062987 33 - 159171411 TCCGGGGAGAAAGAACAG-TGGCAGAACCTCCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785376 33 + 3513951 TCTGGGGACAAAGAACAG-TGGCAGAACCTCCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834308 33 + 1920343 TCCAGGGACAAAGAACAG-TGGCAGAACGTCCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947467 33 - 7032639 TCCGGGGAGAAAGAAAAG-TGGCAGAACCTCCTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22759038 28 + 28711273 ------GAGGAAGTATAGTTGGTAGGATCTTATG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040619 28 - 122082543 GCCATGGTTAAAT------CAGCAGAACCTCCGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21376856 17 + 61074082 ----------------AG-TGGCAGAACCTCATG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 355965 20 - 852752 TCT-------------AG-TGGTTGAAGCTCATG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I e micMur3.chr16 35875314 1699 - 65901067 I a score=212571.000000 s hg38.chr17_GL383564v2_alt 50310 13 + 133151 GGTGAGGAATCCC s panTro5.chr17 16244206 13 + 83181570 GGTGAGGAATCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151691 13 + 83442489 GGTGAGGAATCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986713 13 + 4267968 GGTGAGGAATCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967109 13 - 2193130 GGTGAGGAATCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039670 13 - 77216781 GGTGAGGAATCCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952278 13 - 80997621 GGTGAGGAATCCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008521 13 + 10377808 GGTGAGGAATCCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895636 13 - 8458610 GGTGAGGAATCCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851376 13 + 75148670 GGTGAGGAATCCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074817 13 + 4244037 GGTGAGGAATCCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102686 13 + 4569836 GGTGAGGAATCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063020 13 - 159171411 GGTGAGGAATCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785409 13 + 3513951 GGTGAGAAATCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834341 13 + 1920343 GGTGAGGAATCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947500 13 - 7032639 GGTGAGGAATTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877013 13 - 65901067 GGTGAGGAGTTCC i micMur3.chr16 I 1699 C 0 s otoGar3.GL873537 22759066 13 + 28711273 GGTGTGGAGTTGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040647 13 - 122082543 GGAAAGGAATTTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21376873 13 + 61074082 GGTGTGGAGTCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 355985 13 - 852752 GGTTAGAAGTCCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2962236 1523 + 8555354 I a score=6146754.000000 s hg38.chr17_GL383564v2_alt 50323 331 + 133151 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGGTATAAAAGGACTGCAGAGGAAGGAGAGACTCAAAC s panTro5.chr17 16244219 331 + 83181570 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTATGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTGGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGGTATAAAAGGACTGCAGAGGAAGGAGAGACTCAATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151704 331 + 83442489 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTATGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTGGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGGTATAAAAGGACTGCAGAAGAAGGAGAGACTCAATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986726 331 + 4267968 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGCTATAAAAGGACTGCGGAGGAAGGAGAGACTCAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967122 330 - 2193130 TGATTCCCAAACAACTCCACCCCATGTCCCTGGGTGTCCTCCCGTCTGAGTAATGCAGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCCATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGTTTGA-GGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACCATTAATGGTATAAAAGGACCACAGAGGAAGGAGAGACTCAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039683 331 - 77216781 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAACTGAAGCA-TTAGGAAAGGAAACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952291 331 - 80997621 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAACTGAAGCA-TTAGGAAAGGAAACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008534 331 + 10377808 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAACTGAAGCA-TTAGGAAAGGAAACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895649 331 - 8458610 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCTTATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851389 331 + 75148670 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074830 331 + 4244037 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102699 330 + 4569836 TGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGTGGGCAGCCTTTTGGGGCTGTGATGATTCTATCTCCTATGAAGCCATCTGATGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATG-CGTATGCAAAGCCCCCACCCACCATTAATAGTATAAAAGGACCGTAGAGGAGGGAGAGACTCAAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063033 331 - 159171411 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGTCTTTTGGGGCTGTGATGATTCTCCCTCCTATGAAGCCGTCTGATGAAACTCTGATTTCACCAATCGCTAGCACCCAGGAAAAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGA-ATTTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACCATTAATAGTATAAAAGGACCACAGAGGAAGGAGAGACTCAAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785422 331 + 3513951 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGCCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTCCCTCCTATGAAGCCGTCTGATGAAACTCTGATTTCACCAATCACTAGCGCCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAAGCCCCCACCCACCATTAATGGTATAAAAGGACCGCAGAGGAAGGAGAGACTCAAAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834354 331 + 1920343 TGATTCCCAAACAACTCCACCCCATGTCTCCGGCTGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTATGATGATTCTCTCTCCTATGAAGCCGTCTGATGAAACTCTGATTTCACCAATCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCCAAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGCATGCCAAGCCCCCACCCACCATTAATGGTATAAAAGGACCGCAGAGGAACAAGAGACTCAAAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947513 331 - 7032639 TGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCGGACAGCCTTTTGGGGCTGTGATGATTCTCCCTCCTATGAAGCTGTCTGATGAAACTCTGATTTCACCAATCACTAGCACCCAGGAAGAGCCTGGTGTGACATAAGCTGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGC-ATCTAACTAGCATATTTTG--GAG--AAAAATTAGCTGAAGCA-TTAGGAAAGGAAACTATGCTGTATGCCAGGCCCCCACCCACCATTAATGGTATAAAAGGACTGCAGAGGAAGGAGAGACTCAAAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877026 330 - 65901067 TGATTCCCAGACGGCTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGGGGAGAGAC-TTTGGGGCTGTAATAATTCCACCTCCTTTGAAGCTATCTGATGAAACTCTGATTTCACCAACCACTGGCACTCAGGAAGAGCCTGGTGTGACACAAGATGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTGGAAGC-ATCTAACTAGCATATTTTG--GTG--AAAAATTAGCTAAAGCA-TTAGGAAATGAAACTATGCTGTATGCCAAGCCCCCACCCACCATTAAGGGTATAAAAGGATCATAGAGAAAGGAGAGCCTCAAAC i micMur3.chr16 C 0 I 24 s proCoq1.NW_012135969v1 2963759 329 + 8555354 TGATTCCCAGACGACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGGGGAGAGCC-TTTGGGGCTGTAATAATTCCACCTCCTTTGAAGCTATCTGATGAAACTCTGATTTCACCAACCACTGGCACCCAGGAAGAGTCTGGTGTGACACAAGCTGAATGGAATAATTTTATGGGATGA-GAGGGACTCTTTGGAAGC-ATCTAAATAGTATATTTTG--GAG--AAAAATTAGCTAAAGCA-TTAGGAAATGAAACTATGCTGTATGCCAAGCCCCCACCCACCATTAGGGGTATAAAAGGACCATAGAGGAAGGAGAGCCTCAAAT i proCoq1.NW_012135969v1 I 1523 I 1 s otoGar3.GL873537 22759079 331 + 28711273 TGATTCCCAGTCATCTCTACCCCATGTTTCTGGCTGTCCTCCCTTTTGAGTTATGGCAAAAGCCTTTTGGGGCTGTAATAATTCTGTCTCCTTTGAAGCAATCTGATGAAACTCTGATTTCACCAACCACCAGCATTCTGGATGAACCTGGTATGACACAAGTTGAATGGAACAGTTTCATAAAATGAGGAGGGACACTTTGGAAGC-ATCTAAGTGGCATATTTTG--GAG--AAAAATTAGCTAAAGCA-TTGGGAAATGAAACTATGCTGTATGCCAAACCTCCACCCATCATTAAGGGTATAAATGAACCGTTGGGGAAGGAGAGACTCAAAT i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22040660 333 - 122082543 TGATT-CCAAACAACCCCACCTAATGTCACAGGCTATCCTTCCCTCTGAGTAATGGGGTGAGCCTTATGGGACTGTGATGAATCTGCCTCCTTTGAAGGCATCTAATGAAACTCTGATTTCATCAACCTTTTGTACCCAGGAAGAGGCTGCTGTGACACAAGCCAAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTGAAAGCAATCTAAGGAGCGTATTTTGACGAA--AAAAATTAGCTTCGGGA-CCAGGAAAGAGAATTATGCTATTTGCCAAGCCTCCACCCACTGGTATGGGTATAAAAAGACCACGAAGGAAGGAGAGACTCAAAC i mm10.chr11 C 0 I 1 s canFam3.chr9 21376886 322 + 61074082 --------AAACAACTCCACCCCATGTCCCTCGCTCTCCTCCCCTCTGAGTAATGGGAAGAGCCATTTGGGGTTGTGATGCTCCTGTCTTCTTTGAAGCCATCTGATGAAACTCTGATTTTACCAACCACTAGCACTCAGGAGGAATCTGGTGTGACACAACCTGAATGGAATAATTTTATGGGTTGA--GGGGACTCTTTGGAAGC-AACTAACTAGCATATTTTG--GAGGAAAAAATTAGCTGAAGCA-TGGGGAAGGGAAACTATGCTGTATGCCAA-CCCCCACCCACCAATAAGAGTATAAAAGGACTACGGAGGATGGAGAGACTCAAAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 355998 328 - 852752 TGATTCCCAAATAACTCCACCCCGTGTCCCTTGCTGTCCTCCTCTCTGAGTAATGGGGAGAGCCATTTGGGGCTGTGATGATTCTGCCTCCTTTGAAGCTATCTGATGAAACACTGATTTCACCAACCATTAGCATCCAGGAGGAGTCTGATGTGACACAAGCAGAATGGAATAATTTTATGGGATGA--GGGGACTCTTTGGAAGC-ATCT--TTTGCTTATTTTG--GAA--AAAAATTAGCTGAAGCATTTAGGAAAAGAAATTATGCTATATGCCAAGCCCCCACCCACCTCTAAGGGTATAAAAGGAAGGCGGAGGAAGGAGAAGCTCAAAC i dasNov3.JH570468 C 0 C 0 a score=373678.000000 s hg38.chr17_GL383564v2_alt 50654 24 + 133151 -CTGCCCACATCCACCTCCAGCAGC s panTro5.chr17 16244550 24 + 83181570 -CTGCCCACATCCACCTCCAGCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152035 24 + 83442489 -CTGCCCACATCCACCTCCAGCAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987057 24 + 4267968 -CGGCCCACATCCACCTCCAGCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967452 24 - 2193130 -CTGCCCACATCCACCTCCAGCAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040014 24 - 77216781 -CTGCCCACATCCACCTCCAGCAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952622 24 - 80997621 -CTGCCCACATCCACCTCCAGCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008865 24 + 10377808 -CTGCCCACATCCACCTCCAGCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895980 24 - 8458610 -CTGCCCACATCCACCTCCAGCAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851720 24 + 75148670 -CTGCCCACATCCACCTCCAGCAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075161 24 + 4244037 -CTGCCCACATCCACCTCCAGCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103029 24 + 4569836 -CAGCCCACATCCACCTCCAGCAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063364 24 - 159171411 -CTGCTCACATCCACTTCCAGCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785753 24 + 3513951 -CTGCTCACATCCACTTCCAGCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834685 24 + 1920343 -CTGCTCACATACACTTCCAGCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947844 24 - 7032639 -CTGCTCACATCCACTTCCAGCAGC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2964089 24 + 8555354 -CCACTCACGTCCACGTCCAGAAGC i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22759411 24 + 28711273 -TCATCCACATCCACTTCCAGCAGC i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22040994 24 - 122082543 -TCACCCAGACCTACCTGCAGCAGC i mm10.chr11 I 1 C 0 s canFam3.chr9 21377208 24 + 61074082 -CTCACCACATCTAGCTATATTAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356326 25 - 852752 TTCATCCACATCCACCTCCAGCAGC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35877356 24 - 65901067 I a score=668975.000000 s hg38.chr17_GL383564v2_alt 50678 40 + 133151 --------TTACCTGCTTTTCCATTACCTGTTCCAGCACCATGTCTTA s panTro5.chr17 16244574 40 + 83181570 --------TTACCTGCTTTTCCATTACCTGTTCCAGCACCATGTCTTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152059 40 + 83442489 --------TTACCTGCTTTTCCATTACCTGTTCCAGCACCATGTCTTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987081 40 + 4267968 --------TTACCTGCTTTTCCATTACCTATTCCAGCACCATGTCTTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967476 40 - 2193130 --------TTACCTGCTTTTCCATTACCTGTTCCAGCACCATGTCTTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040038 40 - 77216781 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952646 40 - 80997621 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008889 40 + 10377808 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896004 40 - 8458610 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851744 40 + 75148670 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075185 40 + 4244037 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103053 40 + 4569836 --------TTACCTGCTTTTCCATTACCTGTCCCAGCACCATGTCTTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063388 40 - 159171411 --------TTACCTGCCTTTCCATTACCAGTCCCAGCACCATGTCTTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785777 40 + 3513951 --------TTACCTGCCTTTCCATTACCCATCCCAGCACCATGTCTTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834709 40 + 1920343 --------TTACCTGCCTTTCCATTACCCGTCCCAGCATCATGTCTTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947868 40 - 7032639 --------TTACCTGCCTTTCCATTACCTGTCCCGGCACCATGTCTTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877380 40 - 65901067 --------TCACCTGCTCTCCCATTACCTGTCCCAGCACCATGTCTCT i micMur3.chr16 I 24 C 0 s proCoq1.NW_012135969v1 2964113 40 + 8555354 --------TCACCTGCTCTCCCATTACCTGTCCCAGCACCATGTCTCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22759435 40 + 28711273 --------TCACCTGCTCTTGCATTACCTGTCCCAGCCTCCTGTCTGG i otoGar3.GL873537 C 0 I 13351 s mm10.chr11 22041018 37 - 122082543 ---------TCACTGC--TCCCATCACTTCTCCCCAAACCATGTCCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21377232 39 + 61074082 --------TTACCCGCTCT-CCATCACCTCTCCCTGCACCATGCCTTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356351 48 - 852752 TCACCTGTTCACCTACTCTCCCATCACCTCTCTCAGCACCATGCCATA i dasNov3.JH570468 C 0 C 0 a score=2114410.000000 s hg38.chr17_GL383564v2_alt 50718 107 + 133151 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCG s panTro5.chr17 16244614 107 + 83181570 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152099 107 + 83442489 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987121 107 + 4267968 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTATACCCTGCCTGGGGCCTGCAACATCCCCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967516 107 - 2193130 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040078 107 - 77216781 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACAGCCACACGCTGCCTGGGGCCTGCAACATCCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952686 107 - 80997621 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACAGCCACACGCTGCCTGGGGCCTGCAACATCCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008929 107 + 10377808 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCACACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACAGCCACACGCTGCCTGGGGCCTGCAACATCCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896044 107 - 8458610 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACAGCCACACGCTGCCTGGGGCCTGCAACATCCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851784 107 + 75148670 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACGCTGCCTGGGGCCTGCAACATCCCCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075225 107 + 4244037 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACAGCCACACACTGCCTGGGGCCTGCAACATCCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103093 107 + 4569836 CAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCCACACGCTGCCCGGGGCCTGCAACATACCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063428 107 - 159171411 CAGTTGCTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGGCCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785817 107 + 3513951 CAGTTGCTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834749 107 + 1920343 CAGTTGCTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGGCTCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947908 107 - 7032639 CAGTTGCTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877420 107 - 65901067 CACCTGCTGTCAGCCCAGCTTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGGCCCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2964153 107 + 8555354 CACCTGCTGCCGGCCCAGCCTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACACCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i proCoq1.NW_012135969v1 C 0 T 94562 s otoGar3.GL873537 22772826 107 + 28711273 CTCCTGCGTCCTGCCCAGCCTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGGCCCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i otoGar3.GL873537 I 13351 C 0 s mm10.chr11 22041055 107 - 122082543 TGAGTCTTGCCTGCCCGCCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i mm10.chr11 C 0 C 0 s canFam3.chr9 21377271 107 + 61074082 CAACTGCTGCCTGCCCAACCTGAGCTGCCGCTCCACTTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACACCTGCACCCTGCCTGGGGCCTGCAACATCCCCG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356399 107 - 852752 CAACTGCTGCCTGCCCAACCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCATGGCTGCACCCTGCCCGGTGCCTGCAACATCCCCG i dasNov3.JH570468 C 0 C 0 a score=340571.000000 s hg38.chr17_GL383564v2_alt 50825 19 + 133151 CCAATGTGAGCAACTGCAA s panTro5.chr17 16244721 19 + 83181570 CCAATGTGAGCAACTGCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152206 19 + 83442489 CCAATGTGAGCAACTGCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987228 19 + 4267968 CCAATGTGAGCAACTGCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967623 19 - 2193130 CCAATGTGAGCAACTGCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040185 19 - 77216781 CCAATGTGGGCAACTGCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952793 19 - 80997621 CCAATGTGGGCAACTGCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009036 19 + 10377808 CCAATGTGGGCAACTGCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896151 19 - 8458610 CCAATGTGGGCAACTGCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851891 19 + 75148670 CCAATGTGGGCAACTGCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075332 19 + 4244037 CCAATGTGGGCAACTGCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103200 19 + 4569836 CCAATGTGAGTAACTGCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063535 19 - 159171411 CCAACGTGAGCAACTGCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785924 19 + 3513951 CCAACGTGAGCAACTGCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834856 19 + 1920343 CCAACGTGAGCAACTGCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948015 19 - 7032639 CCAACGTGAGCAACTGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877527 19 - 65901067 CCAATGTGGGCAACTGCAA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22772933 19 + 28711273 CCAACGTGGGCAACTGCAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22041162 19 - 122082543 CCAATGTGGGCAACTGCAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21377378 19 + 61074082 CCAATGTGGGCAACTGTGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356506 19 - 852752 CCAATGTGGGCAGCTGCGG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 94562 + 8555354 T a score=127050.000000 s hg38.chr17_GL383564v2_alt 50844 6 + 133151 CTGGTT s panTro5.chr17 16244740 6 + 83181570 CTGGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152225 6 + 83442489 CTGGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987247 6 + 4267968 CTGGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967642 6 - 2193130 CTGGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040204 6 - 77216781 CTGGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952812 6 - 80997621 CTGGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009055 6 + 10377808 CTGGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896170 6 - 8458610 CTGGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851910 6 + 75148670 CTGGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075351 6 + 4244037 CTGGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103219 6 + 4569836 CTGGTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063554 6 - 159171411 CTGGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785943 6 + 3513951 CTGGTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834875 6 + 1920343 CTGGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948034 6 - 7032639 CTGGTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877546 6 - 65901067 CTGGTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2869698 6 + 8555354 CTGGTT i proCoq1.NW_012135969v1 T 94562 C 0 s otoGar3.GL873537 22772952 6 + 28711273 CTGGTT i otoGar3.GL873537 C 0 T 13395 s mm10.chr11 22041181 6 - 122082543 TTGGTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21377397 6 + 61074082 CTGGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356525 6 - 852752 CTGGCT i dasNov3.JH570468 C 0 C 0 a score=2352717.000000 s hg38.chr17_GL383564v2_alt 50850 116 + 133151 CTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA s panTro5.chr17 16244746 116 + 83181570 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152231 116 + 83442489 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987253 116 + 4267968 CTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967648 116 - 2193130 CTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCATCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040210 116 - 77216781 CTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952818 116 - 80997621 CTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009061 116 + 10377808 CTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896176 116 - 8458610 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851916 116 + 75148670 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075357 116 + 4244037 CTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACGATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAATGCGGAGCTGGAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103225 116 + 4569836 CTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAATGCGGAGCTGGAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063560 116 - 159171411 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAATGCAGAGCTGGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785949 116 + 3513951 CTGCGAGGGATCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834881 116 + 1920343 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTggagaaggtgcgtcagctggagcgggagaacgcggagctggagc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948040 116 - 7032639 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAGAACGCGGAGCTGGAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877552 116 - 65901067 CTGTGAAGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCGGCTGGAGCGGGAGAACGCGGAGCTGGAGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2869704 116 + 8555354 CTTCGAGGACTCCTTCAACAGCAACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGATAATGCGGAGCTGGAGA i proCoq1.NW_012135969v1 C 0 I 1084 s otoGar3.GL873537 22759563 116 + 28711273 CTGTGAGGGCCTCTTCAGTGATAACGAGAAGTGGATCATGCAGTTCCTGAATGACCGCCTAGCCAGGTACCTGGAGAAAGTGCGCCAGCTGGAGCAGAAGAACATAGAGCTGGAGA i otoGar3.GL873537 T 13395 C 0 s mm10.chr11 22041187 116 - 122082543 CTGTGAGGGCTCCTTCAATGGCAATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTATATGGAGAAGGTGAGGCAGCTGGAGAGAGAGAATGCAGAGCTGGAAT i mm10.chr11 C 0 C 0 s canFam3.chr9 21377403 116 + 61074082 CTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356531 116 - 852752 CTGCGAGGGCTCCTTCAATGGCAACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAGAACGCGGAGCTGGAGG i dasNov3.JH570468 C 0 C 0 a score=4554235.000000 s hg38.chr17_GL383564v2_alt 50966 287 + 133151 AACTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCGTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------TATGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTATGTTGA s panTro5.chr17 16244862 287 + 83181570 AACTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------TATGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTATGTTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152347 287 + 83442489 AACTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------TATGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTATGTTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987369 287 + 4267968 AACTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------TATGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTATGTTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967764 287 - 2193130 AACTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTCG--------GCCA--------------------------------------------TGTTGGA-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTATGTTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040326 287 - 77216781 ACCTCATCCGGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------CGTGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGATAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTATGTTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952934 287 - 80997621 ACCTCATCCGGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------CGTGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGATAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTATGTTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009177 287 + 10377808 ACCTCATCCGGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------CGTGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGATAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTATGTTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896292 289 - 8458610 ACCTCATCCGGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------CATGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTTTTATTCTCATGAGATAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTATGTTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852032 287 + 75148670 ACCTCATCCGGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------CGTGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGATAAATTTCTTTTCAGATTCTATGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTATGTTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075473 289 + 4244037 ACCTCATCCGGGAGCG---------GTCCCAGCAACAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAGGGGGTTG--------GCCA--------------------------------------------CGTGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTTTTATTCTCATGAGATAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAACGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTATGTTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103341 287 + 4569836 ACCTCATCCGGGAGCG---------GTCGCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTCG--------GTCA--------------------------------------------CTTGGGG-GGC--CAGCAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTATGTTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063676 287 - 159171411 ACCTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGTTGTGCGCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGAGGGTAG--------GCCA--------------------------------------------TGTGGGG-GCA--TGGCAGCAGCTGGCTGTCTTTGAGCAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGGCAAGGCTGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAACCAAGTATGTTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786065 287 + 3513951 ACCTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGCTGG--------GCCA--------------------------------------------TGTGGGG-GCA--CGGCAGCAGCTGGCTGTCTTTGAGCAGTAAGACACTCTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGGCAAGGCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCCTCTGATGACTTTAGAACCAAGTATGTTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834997 288 + 1920343 gCCTCATCCGGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGTGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTGG--------GCCA--------------------------------------------TGTGGGGAACA--CAGCAGCAGCTGGCTGTCTTTGAGCAGTAAGACATTCTCAAGTTCAAGTGC--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGGCAAGGCTGAGAACGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGTTGGCCTCTGATGACTTCAGAACCAAGTATGTTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948156 287 - 7032639 ACCTCATCCAGGAGCG---------GTCCCAGCAGCAGGAGCCCTTGCTGTGCGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTGG--------GCCA--------------------------------------------TGTGGGG-GCA--CGGCAGCAGCTGGCTGTCTTTGAGCAGTAAGACATTCTCAAGTTCAAGTGT--ACCTCATGAGAGAAATTTCTTTTCAGATTCTGTGTGGCAAGGCTGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCCTCTGATGACTTTAGAACCAAGTATGTTGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877668 285 - 65901067 GCCTCATCCAGCAGCG---------GTGCCAGGAGCAGGACCCCTTGGTGTGTGCCAACTACCAGTCCTACTTCCGGACCATCGAGGAGCTCCAGCAGAAGGTGAG-GGCTGG--------GCC---------------------------------------------CATGGGA-GCC--CAGCAGCCACTGGCTCTCTTTGATCAATAAGACATTCTCAAGTTCAAGTGG--ACCTCACGAGAGACATTTCTTTTCAGATTCTGTGTGCCAAATCTGAGAATGCCAGGATAGTGACGAAGGTAGACAATGCCAAGCTGGCCTCTGATGACTTCAGAACCAAGTATGTTGA i micMur3.chr16 C 0 I 19 s otoGar3.GL873537 22759679 295 + 28711273 GTCACATCTGGGAGCACAGCCAGATGGGCCAAGCGCAGGAGCTCTTGGTGTGCCCCAACTCCCAGTCCTACTTCTGCACCATCAAACAGCTACAGCAGGAGGTGAG-AGATGG--------GCCA--------------------------------------------TGTGGGA-GCC--CAAGAGCAGCTGGCTTTCTTTGAACAATATGACATTCTCAAGTTCAAGGGC--ACCTCACAACAGAAATTTCTTTTCAGATTCTGTATGCCAAAGCTGAGACTGCCGGGCTGGAGGTCAAGACTTACAATGCCAAGCTGGCCTCTGATGGCTTCAGAACCAAGTATGTTGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22041303 289 - 122082543 GTAGGATCCAGGAGAG---------GAACCAGCAGCAGGACCCCCTGGTGTGTCCTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGGTGAGAGGGTAG--------CCTA--------------------------------------------TCTCAGA-TGCAGCAGCAGCAGTTGCCTTTTCTTGAATGGAGAGACATGCTCAAGTTCAAGTGG--ATCTCACATTAGAACCATTGTTTCAGATTCTGTGTGCTAAGTCTGAGAACGCCAGGCTGGTCGTGCAGATCGACAATGCCAAGCTGGCCTCTGATGACTTCAGGACCAAGTATGTTAA i mm10.chr11 C 0 I 17 s canFam3.chr9 21377519 285 + 61074082 GCCGCATCCGGGAGTG---------GTGCCAGCAGCAGGTGCCTTTCGTGTGTCCCAGCTACCAGTCCTACTTCCGGACCATCGAGGAGCTGCAGCAGAAGGTGAGGGGGT----------GCCA--------------------------------------------TGTGAGG-CTG--CAATAGCAGCCTACTGTCCTTGAACAATAAGATGTTCTCAAGTTCAAGTGG--CCCTCACAGTAGAATCTTGTTTTCAGATCCTGTGTGCCAAGTCTGAGAACACCAGGCTGGTGGTGCAGATCGACAATGCCAAGTTGGCCTCTGATGACTTCAGAACCAAGTATGTTGA i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 356647 337 - 852752 GCCGCATCCACGAGTG---------GTGCCAGCAGCATGTGCCCTTCGTGTGCCCGGACTACCAGTCCTACTTCCGGACCATCGAGGAGCTGCAGCAGAAGGTGAGGGGGTGGAACTCACCGCCAATATAATGAAATATTTGTACACTTTGTAACATACTGGGGTGGGCTGTGGGA-ACA--CAGCAACAGCTGGC--TTTTTGTACAGGAAGACATTCTCAAGTTCAAGCTA--TCCTCATGGTAGAATCTTGTTTCTAGATTCTGTGTGGCAAGTCTGAAAACACGAGGCTGCTGGTGCAGATCGACAATGCCAAGCTGGCATCTGATGACTTCAGAACAAAGTAGGTCAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2869820 1084 + 8555354 I a score=-7093.000000 s hg38.chr17_GL383564v2_alt 51253 4 + 133151 -AC---------------TT----------------- s panTro5.chr17 16245149 4 + 83181570 -AC---------------TT----------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152634 4 + 83442489 -AC---------------TT----------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987656 4 + 4267968 -AC---------------TT----------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968051 4 - 2193130 -AC---------------TT----------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040613 4 - 77216781 -AC---------------TT----------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953221 4 - 80997621 -AC---------------TT----------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009464 4 + 10377808 -AC---------------TT----------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896581 4 - 8458610 -AC---------------TT----------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852319 4 + 75148670 -AC---------------TT----------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075762 4 + 4244037 -AC---------------TT----------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103628 4 + 4569836 -AC---------------TT----------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063963 19 - 159171411 -ACTTCTGGGGCCAGACGTT----------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786352 19 + 3513951 -ACTTCTGGGGCCAGATGTT----------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835285 19 + 1920343 -ACTTCTGGGGCCAGATGTT----------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948443 19 - 7032639 -ACTTCTGGGGCCAGATGTT----------------- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22759974 4 + 28711273 -GC---------------TT----------------- i otoGar3.GL873537 C 0 I 15 s mm10.chr11 22041609 4 - 122082543 -AC---------------TC----------------- i mm10.chr11 I 17 C 0 s canFam3.chr9 21377805 3 + 61074082 -AC---------------T------------------ i canFam3.chr9 I 1 I 18 s dasNov3.JH570468 356984 22 - 852752 GAC---------------TTCTGAACCAGGACACCTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2869820 1084 + 8555354 I e micMur3.chr16 35877953 19 - 65901067 I a score=959097.000000 s hg38.chr17_GL383564v2_alt 51257 65 + 133151 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC s panTro5.chr17 16245153 65 + 83181570 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152638 65 + 83442489 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987660 65 + 4267968 CAAGGTCCCTATGTTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968055 65 - 2193130 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040617 65 - 77216781 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953225 65 - 80997621 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009468 65 + 10377808 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTGTTGCC------------TGGAAGAGAGGAGAAAGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896585 65 - 8458610 CCAGGTCCCTGTGGTTCTTTCATGGTCCTAGGGACCTACTATTGCC------------TGGAAGAGAAGAGAAAGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852323 65 + 75148670 CAAGGTCCCTATGGTTCTTTCATGGCGCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075766 65 + 4244037 CAAGGTCCCTGTGGTTCTTTCATGGTCCTAGGGACCTACTATTGCC------------TGGAAGAGAAGAGAAAGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103632 65 + 4569836 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGTAGAGAGGAGCAAGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063982 65 - 159171411 CAAGGTCCCTGTGGTTCTTTTATGGTCCTAGGGACCTAACATTGCC------------TGATAGGGAGGAGAAAGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786371 65 + 3513951 CAAGGTCCCTGTGTTTCTTTTATGGTCCTAGGGACCTAATATTGCC------------TGGAAGGGAGGAGAAAGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835304 65 + 1920343 CAAGGTCCCTGTGGTTCTTTCATGGTCCTAGGGACCTAATATTGCC------------TGGAAGGGAGGAGAAAGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948462 65 - 7032639 CAAGGTCCCTGTGGTTCTTTTACAGTCCTAGGGACCTAATATTGCC------------TGGAAGGGAGGAGAAAGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877972 65 - 65901067 CAAGCCCCCTATGGCTCTTCCATGGCCATACGGGCCTAACGCTGCC------------TGGAAGGGAGGAGGAAGCC i micMur3.chr16 I 19 C 0 s otoGar3.GL873537 22759993 65 + 28711273 CAAGGTACCTGTGGCTATTTCATGGCCATATGGGCATCATGTTGCC------------TAGAAGGGAAGAAAGATTC i otoGar3.GL873537 I 15 C 0 s mm10.chr11 22041613 77 - 122082543 CCAAACCTTGGTGGTTCTGTCATGGCTCTGTGGGTCTAATGTGGCCTGGAAGGGCAGGTGGAAGGGATGAGAAAGAT i mm10.chr11 C 0 C 0 s canFam3.chr9 21377826 65 + 61074082 TAAGATCCCTATGGCTCTTACATGGTTCCCTGTGACTAATACTTCC------------TGGAAGGGAGGAGGCAGCC i canFam3.chr9 I 18 C 0 s dasNov3.JH570468 357006 65 - 852752 TAAGACCCTGGTAGCTCTTTCATGGCCCTATGAACCTAATGTGACC------------TGGAAGAGAGCAGACAGCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2869820 1084 + 8555354 I a score=54565.000000 s hg38.chr17_GL383564v2_alt 51322 10 + 133151 ATTTCTCTCT s panTro5.chr17 16245218 10 + 83181570 ATTTCTCCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152703 10 + 83442489 ATTTCTCCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987725 10 + 4267968 ATTTCTCCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968120 10 - 2193130 ATTTCTTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46064047 10 - 159171411 ATTTCTCTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786436 10 + 3513951 ATTTCTCTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835369 10 + 1920343 ATTTCTCTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948527 10 - 7032639 ATTTCTCTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878037 10 - 65901067 ATTTCTCTCT i micMur3.chr16 C 0 I 4 s otoGar3.GL873537 22760058 10 + 28711273 ACTTGTCCTT i otoGar3.GL873537 C 0 I 4 s mm10.chr11 22041690 10 - 122082543 ATGTCTTCCT i mm10.chr11 C 0 I 5 s canFam3.chr9 21377891 10 + 61074082 ATTTCACCCT i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 357071 10 - 852752 ACATCCCTCT i dasNov3.JH570468 C 0 I 4 e proCoq1.NW_012135969v1 2869820 1084 + 8555354 I e macNem1.NW_012014910v1 2009533 0 + 10377808 C e colAng1.NW_012122154v1 2103697 0 + 4569836 C e manLeu1.NW_012106252v1 2075831 0 + 4244037 C e chlSab2.chr16 64852388 0 + 75148670 C e cerAty1.NW_012006043v1 1896650 0 - 8458610 C e rheMac8.chr16 30040682 0 - 77216781 C e macFas5.chr16 27953290 0 - 80997621 C a score=1510180.000000 s hg38.chr17_GL383564v2_alt 51332 118 + 133151 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATTAGTTTCAAATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGTT--------TTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA s panTro5.chr17 16245228 117 + 83181570 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATTAGTTTCAAATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------TTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152713 117 + 83442489 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATTAGTTTCAAATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------TTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987735 117 + 4267968 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATTAGTTTCAAATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------TTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACGAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968130 117 - 2193130 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAATAGAGAACTAGACTCACGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040682 117 - 77216781 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTAGACTCATGAGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953290 117 - 80997621 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009533 117 + 10377808 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896650 117 - 8458610 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTAGATTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852388 117 + 75148670 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075831 117 + 4244037 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTAGATTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103697 117 + 4569836 ATTTCTCCTCCTAGGGCTGG--TTAT-GTAAAATCAGTTTCAAACAGAGACCTGGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGG-T--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064057 115 - 159171411 TTTACCTCTCTTAGGGTTGG--TTAT-GTAAAATCAGTTTCAAACAGAGATCCAGACTTATGGGCTGCCTGCTGTTCAGTCTATACTAG-T--------CTTTTCGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAAC--CACGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786446 117 + 3513951 TTTTCTCCTCTTAGGGTTGG--TTAT-GTAAAATCAGTTTCAAACAGAGATCCAGACTTATGGGCTGCCTGCTCTTCAGTCTACACTAG-T--------CTTTTCGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACACGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835379 117 + 1920343 TTTTCTCCTCTTAGGGTTGG--TTAT-GTAAAATCAGTTTCAAACAGAGATCCAGGCTTATGGGCTGCCTGCTCTTCAGTCTATACTAG-T--------CTTTTCGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACATGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948537 117 - 7032639 TTTTCTCCTCTTAGGGTTGG--TTAT-GTAAAATCAGTTTCAAACAGAGATCCAGACTTATGGGCTGCGTGCCCTTCAGTCTACACTAG-A--------CTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACACGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878051 109 - 65901067 ATTTCTCCTCTTAAGGCTGG--CTTA-GGAACGTCAGTTTCAAACAGGGATCCACGCTCATGTATGGCCTGCTCTTTAGTCCACATGGG-T--------CTTTCTGGAGGGGCTT--------------------------------------------------------------------------------------------------CTTAA--------A i micMur3.chr16 I 4 C 0 s otoGar3.GL873537 22760072 109 + 28711273 ATTTCTCCTCTTAAGGCAGA--CTGC-ATAACACCACTTTCAAACAGTAGTCTACACTCACGTACTGCCTGCTCTTCAGTCTATACTAT-T--------CTTTCTGGAAGAGCCT--------------------------------------------------------------------------------------------------CTTAA--------A i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22041705 215 - 122082543 ATGTCTTCTCCTGAGTGTGG--CTATAAAAAAAAAAGCTTCAAATAGGTATTCAGACC---------CTAGCCCTTCAGTTGATATGGT-TGACTCTCCTGTATTGGAAGTGCTTGGGACTGGAAGTATTACTTGGTTGGCTTTCCTTCTGAGTTGTGGAATATTTGAATATTCATAATAAGCTATCTTGGCACTCCCCATACACGGAGACCCCCTAAAGCACAAAA i mm10.chr11 I 5 I 135 s canFam3.chr9 21377905 118 + 61074082 ATTTTCCTTCTCAAGCCTGGCCTTAT-ATAAAATCATTTTCAAATAAGAATCCAGATTCATATACTGCATGCTCTTCAGTCAATA-TGG-T--------CTTTCCAGAAGGCCCC--------------------------------------------------------------------------------------------------CCTAAGCTCCCAAA i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 357085 116 - 852752 ATTGCTCCACTCATGTCTGA--TTAT-GTAAAATCCGTTTCAAACAGGGATCCAGACTCATGTGCCACCTGCTTTTCTGTCTATATTGG-T--------CTTTCTGGAAGGGCTT--------------------------------------------------------------------------------------------------CTAAAACCCCAAA- i dasNov3.JH570468 I 4 C 0 e proCoq1.NW_012135969v1 2869820 1084 + 8555354 I a score=3421005.000000 s hg38.chr17_GL383564v2_alt 51450 288 + 133151 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----GTGGTATATTAGCTAACAAAACCGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAAGAGAAGAGGCAGAAAAC--TG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTCCG-ACAC s panTro5.chr17 16245345 290 + 83181570 TTCAGAGGTT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----GTGGTATATTAGCTAACAAAACCGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAAGAGAAGAGGCAGAAAACTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTCCG-ACGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152830 290 + 83442489 TTCAGAGGTT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----GTGGTATATTAGCTAACAAAACCGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAAGAGAAGAGGCAGAAAACTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTCCG-ACGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987852 290 + 4267968 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----GTGGTATATTAGCTAACAAAACTGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAAGAGAAGAGGCAGAAAACTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTCCA-ACGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968247 291 - 2193130 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----GTGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCATGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAAGAGAAGAGGCAGAAAATTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTTCG-ACGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040799 291 - 77216781 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----ATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTTCTGACTTATCCTCCCACTCTG-ATTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953407 291 - 80997621 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----ATGGTTTATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTCTCTGACTTATCCTCCCACTCTG-ATGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009650 291 + 10377808 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----ATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTTCTGACTTATCCTCCCACTCTG-ATGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896767 291 - 8458610 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----ATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTTTAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTCAAGAAGATTCAGG-TCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTTCTGACTTATCGTCCCACTCTG-ATGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852505 291 + 75148670 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----ATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTCAAGAAGATTCAGG-CCAGTTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTTCTGACTTATCCTCCCACTCTG-ATGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075948 291 + 4244037 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----ATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGGGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAACAACACATGAGAGGGGAAGG-TGGTTTTCTTTTCTGACTTATTGTCCCACTCTG-ATGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103814 291 + 4569836 TTCAGAGATT----------------------GAAATGGAT------------------------------------------TGTTCTT-------------------------TG-GGA----ATTGATT-------------TG----GTGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCATGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCACGGACAGCTTGACTAAAACATATGGAAGAGAAGAGGCAGAAAGCTGTG--TAAGTTGGAGAAGATTCAGG-TCAGTTCTA-CCCAAACAACACATGAGAAAGGAAGG-TGGTTTTCTTTTCTGACTTATCCTCCCACTCCG-ATGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064172 291 - 159171411 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TG-GGA----ACTGATT-------------TG----GTGGTATACTAGCTAACAAAATTGATAGCACAGCGAGAGACTTCATCTCATGAGTGCCCATGGGCTCCTTGTGGTGTCAGAGCGAGTCAGGGAACCTCTTCATTCTATCCACGCACAGCTTGAGGGAAACATGTGGAAGAGAAGAGGCAGAAAATGGTG--TAAGCTCAAGAAGATTCAGG-CCAATTCTA-CCCAAGCAACACATAATAGAGGAAGG-TGGTTTTCTTTCCTGACCTATCCTCCCACTCCG-ATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786563 291 + 3513951 TCCAGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TG-GGA----ACCGATT-------------TG----GTGGTATATTAGCTAACAAAATTGATAGCACAGCGAGAGACTTCATCTCATGAGTGCCCCTGGGCTTCTTGTGGTGTCAGGGCGAGTCAGGGAACCTCTCCATTCTATCCATGCACAGCTTGAGGGAAACGTGTAGAAGAGAAGAGGCAGAAAATGGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAGCAGCACATAATAGAGGAAGG-TGGTTTTCTTTTCTGACTTATCCTCCCACTCCG-ATGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835496 291 + 1920343 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TG-GGA----ACTGATT-------------TG----GTGGTATATTAGCTAACAAAATTGACAGCACAGTGAGAGACTTCATCTCACGAGTGCCCCTGGGCTCCTTGTGGTGTCAGGGTGAGTCAGGGAACCTCTCCATTCTATCCATGCACAGCTGGAGGGAAACATGTGGAAGAGAAGAGGCAGAAAATGGTG--TAAGTTCAAGAAGATTCAGG-CCAATTCTA-CCCAAGCAACACATAATAGAGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTCCA-ATGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948654 236 - 7032639 TTTGGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TG-GGA----ACTGATT-------------TG----GTGATATATTAGCTAACAAAATTGATAGCACAGCGAGAGACTTCATCTCATGAGTGCCCATGGGCTCCTTGTGGTGTCAGG------------------------------------GCTTGAGAGAAACATGTGGAAGAGAAGAGGC---------------------AGAAGATTCAGG-CCAATTCTA-CCCAAGCAACACATAATAGAGGAAGG-TGGTTTTCTTTCCTGACTTATCCTCCCACTCCG-ATGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878160 266 - 65901067 TTCAGAGATT----------------------GGAATTAGT------------------------------------------TCTTTTT-------------------------TA-GGA----ATAGATT-------------GATCCAATGGTATATTAACCAGCAAAATTGAGAGCAGAGTGAGAGA---CATCTCATGAGTGCTTG------------GGTGTTGGGGTGAGTCAGGGGACTTCTCCAACCTATCTGTGCATAGCTCGAGGGAAACATATGGAAGGGAAGAGGCAGAAATCGGTG--CAAGTTCAAAAAGATCCAGG-G-----------CAAGCAAGACACTAGAGAGGAAGG-TGGGCTTCCTTCCTAGCTCATCCTCCCATC-----TGT i micMur3.chr16 C 0 I 2 s otoGar3.GL873537 22760181 256 + 28711273 TTCAGAGATT----------------------GAAATGAGT------------------------------------------TCTTTTG-------------------------GAGGGA----ATGGATT-------------AGTGT-GTAGTATTTTAACCAATAAAATTGAGAGCAGAGTGAGAGA---CATGTCATGTGTACGTG------------TGATGTTAGGTGAGATAGGGGGCCTCTCTAACCTGTCTG-----GGTTTGAGAGAAACACAGGGAA-GAACAAGGAAGAAAACAGTA--TAAGTTTAAAAATATC-----------------CCAGCAAGATACAGGAGAGGAAGGAGGGGCTTCTTTTCTGGCTCATCCTCTGATC-----TGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042055 339 - 122082543 TTCAAAGACTTTCAGATTTTGAAGCATTTTAGGAATTGGATCTTCTGGTTAGAGATGTTCAATCTCTATCAGGGTTTCTAGAATGTTCTTTTTATAAAACTCCCAAATCCAGAGATG-GGAACGGATTGACT-------------TG----GTGCTATACTAATCAATAACATCAAGAACAGACTGAG-GGTTCCACCTTATGGGAGTCTGCGGGCATA------------AGGGAGTCA-AGCCCTCCCCCAGCTGATCCACACATAGCAAGAAAAGAACA----GAAGAGGAAAGGC------TTGTGGATACGCTCATGGAGTTCTTGGTCCAATACCA-CACTGAGAAGACAT-------------TGG-------------CTGATCGTCCCACCCTGTGTGT i mm10.chr11 I 135 C 0 s canFam3.chr9 21378023 296 + 61074082 TTCAGAGACT----------------------GACATGAAC------------------------------------------TATTCTT-------------------------GG-GGA----ATGGATTGGTTCTTTGGGAATG----GTGGTATATTAACCAACAAAATTGAGAGGAGAATGAGAGACTCCATTTCATGAATCCCTATGGGCAACTTCTGGTGTTAGGGTGAGTCAGGGG-CCTCTCCAG----TCTGTGTGGAGCTTTAGAGAGACA--GGAAAGAAAAGAAGCAGAAAACTGTA--TTATCTCAAAGAGATGGAGA-CCAAC-CTA-TCCACACAAAACACAGTACAAGGGGA-TGGGATTCTTTCCTGCCTCATCCTCCCAACCTA-ATGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357201 250 - 852752 TTCAGAGATT----------------------GAAATCAAT------------------------------------------TGTTCCT--------------------------G-GGA------------------------CA----------------------AAACTGAAAGGAGACTAAGAGACTCCCTCTCCCAAATCCCTGTGGGAGACTTCTGGTATTAGGGTGATTTGGGAGGCCTCTTCAGCCCACCCCTTCAAAGCTTGAGGGAAACATATAAAAGAGAGAGAACAGGC-----TG--GAAGC-----------CAAG-CCAATCTCATCCCAAACAAGACATGGGACAGGAAGG-TGGGCTTCATTCCTGGAGCATCCTCCCGATCTG-ATCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2869820 1084 + 8555354 I a score=769029.000000 s hg38.chr17_GL383564v2_alt 51738 43 + 133151 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAG s panTro5.chr17 16245635 43 + 83181570 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153120 43 + 83442489 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988142 43 + 4267968 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968538 43 - 2193130 ----ATGCAGGTACCAGACGGAGCAGTCCCTGAGGCGGCTGGTGGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041090 43 - 77216781 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953698 43 - 80997621 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009941 43 + 10377808 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897058 43 - 8458610 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852796 43 + 75148670 ----GTGCAGGTACCAGACAGAGCAGTCCCTGAGGCAGCTGGTGGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076239 43 + 4244037 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104105 43 + 4569836 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064463 43 - 159171411 ----GTGCAGGTACCAGACGGAGCAGTCCCTGCGGCAGCTGGTAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786854 43 + 3513951 ----ATGCAGATACCAGACGGAACAGTCCCTGCGGCGGCTGGTGGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835787 43 + 1920343 ----GTGCAGGTACCAGACGGAGCAGTCCCTGCGGCGGCTGGTGGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948890 43 - 7032639 ----GTGCAGGTACCAGACGGAGCAGTCCCTGCGGCGGCTGGTGGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878428 43 - 65901067 ----GTGCAGGTACGAGACGGAGCTGTCCCTGCGGCAGCTGGTGGAG i micMur3.chr16 I 2 C 0 s proCoq1.NW_012135969v1 2870904 43 + 8555354 ----GTGCAGGTACGAGACTGAGCTGTCCCTGAGGCAGCTGGTGGAG i proCoq1.NW_012135969v1 I 1084 I 1188 s otoGar3.GL873537 22760437 43 + 28711273 ----GTTCAGGTATGAGACGGAGCTGTCCCTGCGGCAGGTGGTAGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042394 43 - 122082543 ----GTGCAGGTACCAGACTGAGCTGTCCATGAGGCAGCTGGTGGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21378319 43 + 61074082 ----GTGTAGGTACCAAACAGAGCTGAGCTTGAGGCAGCTTGTGGAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357451 47 - 852752 GTGCTTACAGGTATGAGATGGAGCTGTCCCTGCGGCAGCTGGTGGAG i dasNov3.JH570468 C 0 C 0 a score=2155882.000000 s hg38.chr17_GL383564v2_alt 51781 122 + 133151 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT s panTro5.chr17 16245678 122 + 83181570 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGTTTGAAGAAGAACCATGAGGAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153163 122 + 83442489 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGTTTGAAGAAGAACCATGAGGAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988185 122 + 4267968 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968581 122 - 2193130 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041133 122 - 77216781 TCGGACATCAATAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953741 122 - 80997621 TCGGACATCAATAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009984 122 + 10377808 TCGGACATCAATAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897101 122 - 8458610 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852839 122 + 75148670 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076282 122 + 4244037 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATTTGCCTGAAGAAGAACCATGAGGAGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104148 122 + 4569836 TCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCACGAGGAGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064506 122 - 159171411 TCGGACATCAACAGCATGCGCAGGATCCTGGATGAGCTGACCCTCTGCACGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAACCATGAGGAGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786897 122 + 3513951 TCGGACATCAACAGCATGCGCAGGATCCTGGATGAGCTGACCCTCTGCACGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAACCATGAGGAGGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835830 122 + 1920343 TCGGACATCAACAGCATGCGCAGGATCCTGGATGAGCTGACCCTCTGCACGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAACCATGAGGAGGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6948933 122 - 7032639 TCGGACATCAACAGCCTGCGCAGGATCCTGGATGAGTTGACCCTCTGCACGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAATCATGAGGAGGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878471 122 - 65901067 TCGGACATCAACAGCCTGCGCAGGGTCCTGGACGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTCTGCCTCAAGAAGAACCACGAGGAGGT i micMur3.chr16 C 0 I 784 s otoGar3.GL873537 22760480 122 + 28711273 GCCGACATCAATGGTCTGCGCAGAATCCTGGATGAACTGACCCTGTCCAAGTCTGACCTGGAGGCCCTAGTGGAGTCCCTGAGGGAGGAGCTGCTGCACCTCAAGAAGAACCATGAGAAGGT i otoGar3.GL873537 C 0 I 3 s mm10.chr11 22042437 122 - 122082543 GCTGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACTTGGAGGCTCAGGTGGAGTCTCTGAGGGAGGAGCTGCTGTGCCTCAAGAAGAACCACGAGGAGGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21378362 122 + 61074082 TCAGACATCAATGGCCTGCGCCGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGAGCCTCAAGAGGAACCACGAGGAGGT i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 357498 122 - 852752 GCTGATCTCAACAGCCTGCGCAGGATCCTGGACAACCTGACCCTGTGCAAGTCTGACTTGGAGGCCCAGGTGGAGTCTCTGAGAGAGGAGCTGCTGTGCCTCAAGAAGAACCATGAGGAGGT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I a score=1539426.000000 s hg38.chr17_GL383564v2_alt 51903 128 + 133151 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAACTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGACCCTTCTCTGAGGAACTC-AAGATGTTCTCAGAGAGTGA s panTro5.chr17 16245800 128 + 83181570 ------------------ATGAAAA----AAA-TTCACAAAAGCA--------GGCCTCAGAACTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGATCCTTCTCTGAGGAACTC-AAGATGTTCTCAGAGAGTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153285 128 + 83442489 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAACTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGATCCTTCTCTGAGGAACTC-AAGATGTTCTCAGAGAGTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988307 128 + 4267968 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAACTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGACCCTTCTCTGAGGAACTC-AAGATGTTCTCAGAGAGTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968703 128 - 2193130 ------------------ATGAAAC----AAA-TTCACAAGAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGGTCTGGGACCCTTCTCTAAGGAACTC-AAGGTATTCTCAGAGAGTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041255 128 - 77216781 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGGTATTCTCAGAGAGTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953863 128 - 80997621 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGGTATTCTCAGAGAGTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010106 128 + 10377808 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGGTATTCTCAGAGAGTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897223 128 - 8458610 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGATATTCTCAGAGAGTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852961 128 + 75148670 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGGTATTCTCAGAGAGTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076404 128 + 4244037 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTTAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGATATTCTCAGAGAGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104270 128 + 4569836 ------------------ATGAAAC----AAA-TTCACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGTACTGGG------------AATCAGGAGACGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTC-AAGGTATTCTCAGAGAGTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064628 128 - 159171411 ------------------AGGAAAA----AAA-TTTACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCATTGGG------------AATCAGGAGACAATTACTGTCTGGATCTCTGGTCTGGGACCCTTCTCTGAAGACCTC-AAGGTATTCTCAGAGAGTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787019 128 + 3513951 ------------------AGGAAAA----ACA-TTTACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGAAGACAATCACTGTCCGGATCTCTGGTCTGGGACCCTTCTCTGAAGAACCC-AAGCTATTCTCGGAGAGTAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835952 128 + 1920343 ------------------AGGAAAA----AAA-TTTGCAAAAGCA--------GGACTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGACAATTACTGCCTGGATCTCTGGTCTGGGACCCTTCTCTGAAGAACTC-AGGGTATTCTCAGAGAGTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949055 129 - 7032639 ------------------ATGAAAA----AAATTTTACAAAAGCA--------GGCCTCAGAGCTAAGCTACTAGCACTGGG------------AATCAGGAGACAATTACTGTCTGGATCTCTGGTCTGGGACCCTTCCCTGAAGAACTC-AAGGTATTCTCAGAGAGTGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760605 123 + 28711273 ------------------AAGAATG----AGA-GACACA----CC--------AGCTTCTGAGTTGAGTCTGTGGCATGGGC------------AGCCAGGAGGTGGTCACTGTGAGGTTGCTTGGCCTGGG-CCCTTCCCTGCAGAAGTC-AAGGTTGGCTCAGAGAATGA i otoGar3.GL873537 I 3 C 0 s mm10.chr11 22042559 148 - 122082543 ------------------ATGAGGA----AAT-ATTTAGAAAGCAAGTTTCACAGCCTCAGAGTGACACCTTTAGCATCCAGAGAGGCTTCCCAAATCAGGAGGTACCAGCTGCCAGGGTACATGATGTGGG-CCATTCCCTGAAGGCCTCTAAGCTAAGGACCCAGGAGGA i mm10.chr11 C 0 I 3 s canFam3.chr9 21378487 128 + 61074082 ------------------AGGAAAAGGGGAAA----ATAAAAGTA--------ATCTTTAGAGCCAAGCCTTTAGCATCGGC------------AAGTGGGAGGCAATTACCATCAAGCTTCTTGGGCTGGGATCCTTCTCTGAAGAACTC-AAAATCAGC-CAGAGAATGA i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 357620 116 - 852752 GAGAGGAGAAAGGGGaaaaaaaaaa----aaa-aaaaaaaaaGTA--------GGCTTCAGAGCTAAGCCTTTAGCATTGGG------------AGCCAGGAG------------------------------CCCTTCTCTGAAGAACTT-AAGGTTATCTCAGAGAAGGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I a score=309676.000000 s hg38.chr17_GL383564v2_alt 52031 27 + 133151 CGG-TGCTACATCCATATCAAGGAGTGG s panTro5.chr17 16245928 27 + 83181570 TGG-TGCTACATCCATATCAAGGAGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153413 27 + 83442489 TGG-TGCTACATCCATATCAAGGAGTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988435 27 + 4267968 TGG-TGCTACATCCATATCAAGGAGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968831 27 - 2193130 TGG-TGCTACATCCATATCAAGGAGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041383 27 - 77216781 TGG-TGCTACATCCATATCAAGGAGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953991 28 - 80997621 TGGTTTCTACATCCATATCAAGGAGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010234 27 + 10377808 TGG-TGCTACATCCATATCAAGGAGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897351 27 - 8458610 TGG-TGCTACATCCATATCAAGGAGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853089 27 + 75148670 TGG-TGCTACATCCATATCAAGGAGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076532 27 + 4244037 TGG-TGCTACATCCATATCAAGGAGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104398 27 + 4569836 TGG-TGCTACATCCATATCAAGGAGTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064756 27 - 159171411 AGG-TGCTACATCCATATCGAGGAGTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787147 27 + 3513951 AGG-TGCTACATCCATATCAAGGAGTGA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6949184 27 - 7032639 AGG-TGCTACATCCATATCAAGGTGTGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760728 27 + 28711273 CAA-TGCTAGACCCAGATGGAGGAGTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042710 27 - 122082543 TAC-CACTGTATCCTTACAGAGGAGTGT i mm10.chr11 I 3 C 0 s canFam3.chr9 21378615 27 + 61074082 TCA-TGGTATAGCCATAGCATGGAATGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357736 27 - 852752 TGA-TGCTATATCCGTATTAAGGAGCCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e cebCap1.NW_016107730v1 1836080 0 + 1920343 C a score=2233243.000000 s hg38.chr17_GL383564v2_alt 52058 182 + 133151 AGTGAGCTGCTCATTCTTCAGC--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgagccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-aaaagagctcacagt s panTro5.chr17 16245955 182 + 83181570 AGTGAGCTGCTCATTCTTCAGC--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgagccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aagtaaga-----catggcccttttctt-aaaagagctcacagt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153440 182 + 83442489 AGTGAGCTGCTCATTCTTCAGC--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgagccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aagtaaga-----catggcccttttctt-aaaagagctcacagt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988462 181 + 4267968 A-TGAGCTGCTCATTCTTCAGC--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgagccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-aaaagagctcacagt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968858 182 - 2193130 AGTGAGCTGCTCATTCTCCAGT--GGCTGGGTGAGGGTTAGGCAACTGTTG--GAATTACTGAGGAGGGACA-Tcattcattgagccctgctctctgctgat---cactggtaggtcttgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-aaaagagctcacagt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041410 182 - 77216781 AGTGAGCTGCTCATTCTCCAGT--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGGGGGGCA-TCattcattgagccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954019 182 - 80997621 AGTGAGCTGCTCATTCTCCAGT--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCATTCATTGAGCCCTGCTCTCTGCTCAT---CACtgctaggtcctgaatttggtggtggagatggagagacaaaaaag-aaataaga-----catggcccttttctt-ctaagagctcacagt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010261 182 + 10377808 AGTGAGCTGCTCATTCTCCAGT--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCattcattgagccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagagacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897378 182 - 8458610 TGTGAGCTGCTCATTCTCCAGT--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCattcattgagccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853116 182 + 75148670 AGTGAGCTGCTCATTCTCCAGT--GGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCATTCATTGAGCCCTGCTCTCTGCTCAT---CACtgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076559 184 + 4244037 TGTGAGCTGCTCATTCTCCAGTGGGGCTGGGTGAGGGTTAGGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCattcattgagccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104425 182 + 4569836 AGTGAGCTGCTCATTCTCCAGC--GGCTGGGTGAGGGTTAGGCAGGTGCTG--GAATTACTGAGGAGGGGCA-TCattcattgagccctgctctctgctcat---caccactaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcatagt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064783 182 - 159171411 AGTGAGCTGCTCATTCTCCAGC--GGCTGGCTGAGGGTTAGGCAGGCGCTG--GAACTGCTGAGGATGGACA-Tcattcactgagctctactctctaatggt---ta-tgttaggtcctaaatttgctagtagagatggagggataaaaatg-aaataaga-----catggccctgttcttccaaagagctcacagt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787174 181 + 3513951 AGTGAGCTCCTCATTCTCCAGT--GGCTGGCTGAGGGTTAGGCAGGTGCTG--GAATTGCTGAGGATGGACA-TCATTCATTGAGCTCTGCTCTCTGATGGT---CA-TGTTAGGTCCTAAATTTGCTAGTAGAGATGGAgggatacaaatg-aaataaaa-----catagcccttttctt-caaagagctcacagt i saiBol1.JH378271 C 0 M 415 s cebCap1.NW_016107730v1 1836080 181 + 1920343 AGTGAGCTGCTCATTCTCCAGC--GGCTGGCTGAGGGGTAGGCAGGTGCTG--GGATTGCTGAGGATGGACA-Tcattcattgagctctgctctctgatggt---ca-tgttaggtcctaaatttgctagtagggatggagggataaaaatg-aaataaga-----catagccgttttctt-caaagagctcacagt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949211 181 - 7032639 AGTAAGCTGCTCATTCTCCGGC--GGCTGGCTGAGAGTTAGGCAGGTGCTG--GAATTGCTGAGGATGGACA-TCAATCATTGAGCTCTGCTCTCTGATGAT---CA-TGTTAGGTTCTAAatttgctagtagagatggagggataaaaatg-aaataaga-----catggcccttttctt-caaagagctcacagt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760755 147 + 28711273 -GTGATCTGCTAACTGTCAAGC--AGCTGG-TGAAGGTTTGGCAGGGGTGG--GA------------------------------CTCAGCTCACTGCTGGT---CACtgttaagtcctgaatttgagggtggagatggaagaa-aaaaggg-aaataaga-----ca---cacctccctt-tcaggagctcacagt i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042737 189 - 122082543 GGTGAACTGTGGATGCTGTGGC--ACACGGGGGAGTG-TAGGCAGCTGCTA--GAGATAGTGAGCTGGGTGT-CTGTCCACTGACCTCCCATCTCTGCTGGTTGCTACCACTAGGTTCTGGAATTGATGGTGGAGATGGAgggttaaaaaaataaataaaagaattcatggctcctctct--ctaagaacttgcagc i mm10.chr11 C 0 C 0 s canFam3.chr9 21378642 165 + 61074082 GGTGGGGTCCATATTCTCAAGT--G---------------GGCTGGTGTTG--GAGATGCTGAAGAAGGGCACTCATTTATTGGGCCCTGCTCTCTTCTTGT---CACTATTAATTTCTGAATTTGGTGGTAGaggtggagg---aaaaaag-aaataaga-----catgcaccctctttt-caatgagcgcccagt i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357763 175 - 852752 GGTGAATTGCTAATTCTCAAGC--AGCTGGGTGAGGGTTGGACAGTTGTTGTAGAAATGCTGAGGAAGAACA-TT-----TTGAGACCTGGTCTCTGCTAGT---CACtgccaggtactgtatttggtggtggtaatggaggggacaaaaag-aaa-aaga-----ca-ggcccttctctt-caaaaagctct--gt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I a score=998232.000000 s hg38.chr17_GL383564v2_alt 52240 90 + 133151 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacagagtgaaacaagtaccatatgagatgtacaagcagtatgctct s panTro5.chr17 16246137 90 + 83181570 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacagagtgaaacaagtaccatatgagatgtacaagcagtaagctct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153622 90 + 83442489 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacagagtgaaacaagtaccatatgagatgtacaagcagtaagctct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988643 90 + 4267968 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacagagtgaaacaagtaccatatgagatgtacaagcagtatgctct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969040 90 - 2193130 ctggtatagaaagatagtcatataaacacagtgatataa-acaagacagagtgaaacaagtaccatatgagatgtaaaagcagtatgctct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041592 90 - 77216781 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatttgagatgtacaagcagtatcctct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954201 90 - 80997621 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatttgagatgtacaagcagtatcctct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010443 90 + 10377808 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatttgagatgtacaagcagtatcctct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897560 90 - 8458610 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatttgagatgtacaagcagtatcctct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853298 90 + 75148670 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatttgagatgtacaagcagtatcctct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076743 90 + 4244037 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatttgagatgtacaagcagtatcctct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104607 90 + 4569836 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacagagtgaaacaagtaccatatgagatgtacaagcagtatcctct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064965 90 - 159171411 ttattatggaaagacagccatgtaaatgcaatgatataa-acaagGCAGAGTGAAACAATTATCATATGAAATGTACAAGCAGTATGCTCT i calJac3.chr5 C 0 I 315 s cebCap1.NW_016107730v1 1836261 90 + 1920343 ttagtatggaaagacagcaatgtaaatgcagtgatataa-acaaggcagagtgaaacaattaccatatgagatgtacaagcagtgtgctct i cebCap1.NW_016107730v1 C 0 I 345 s aotNan1.NW_018502359v1 6949392 90 - 7032639 ttagtatggaaagacagccatgtaaacgcagtgatataa-acaaggcagagtgaaacaattaccatgtgagatgtacaagcagtatgctct i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760902 88 + 28711273 gtggcgtggagagataggcatgtacacacagtgacacaa-agaaggcagg--gGAATAAGCAGCATGTGAGATGGACCAGCAGCTTGCTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042926 79 - 122082543 ctagtgtggag-ggcagctatgGAGTCCTGATGATATAATGTAAGGCTGAGTGAAGCAAGAGCTGTGTGCTGTGCATGGT----------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21378807 90 + 61074082 ctagcctggggagatggccacgtaaagacaatgatataa-tacaggcagaggaaaagaagtactatataagatgcacaagcagtatattca i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357938 90 - 852752 gttgtgtggagagacatccatgtaaacattttgacataacacaaggcagagtgaaataagtttc-tgtgagatacatgagcagcacactct i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e saiBol1.JH378271 1787355 415 + 3513951 M a score=28522.000000 s hg38.chr17_GL383564v2_alt 52330 2 + 133151 ag s panTro5.chr17 16246227 2 + 83181570 ag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153712 2 + 83442489 ag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988733 2 + 4267968 ag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969130 2 - 2193130 ag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041682 2 - 77216781 ag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954291 2 - 80997621 ag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010533 2 + 10377808 ag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897650 2 - 8458610 ag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853388 2 + 75148670 ag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076833 2 + 4244037 ag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104697 2 + 4569836 ag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065370 2 - 159171411 ag i calJac3.chr5 I 315 C 0 s cebCap1.NW_016107730v1 1836696 2 + 1920343 ag i cebCap1.NW_016107730v1 I 345 C 0 s aotNan1.NW_018502359v1 6949482 2 - 7032639 ag i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760990 2 + 28711273 AG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043005 2 - 122082543 AG i mm10.chr11 C 0 I 1 s canFam3.chr9 21378897 2 + 61074082 gg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358028 2 - 852752 gg i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e saiBol1.JH378271 1787355 415 + 3513951 M a score=132617.000000 s hg38.chr17_GL383564v2_alt 52332 11 + 133151 aaataatccag s panTro5.chr17 16246229 11 + 83181570 aaataATCCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153714 11 + 83442489 aaataatccag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988735 11 + 4267968 aaataatccag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969132 11 - 2193130 aaataatccag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041684 11 - 77216781 aaataatccag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954293 11 - 80997621 aaataATCCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010535 11 + 10377808 aaataATCCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897652 11 - 8458610 aaataatccag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853390 11 + 75148670 aaataATCCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076835 11 + 4244037 aaataATCCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104699 11 + 4569836 aaataatccag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065372 11 - 159171411 aaaTAATTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787786 11 + 3513951 AAATAATTCAG i saiBol1.JH378271 M 415 C 0 s cebCap1.NW_016107730v1 1836698 11 + 1920343 aaataaTTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949484 11 - 7032639 aaAGAGTCCAG i aotNan1.NW_018502359v1 C 0 I 2010 s otoGar3.GL873537 22760992 10 + 28711273 GAGTGAGCCA- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043008 10 - 122082543 AGGAAGTCCG- i mm10.chr11 I 1 C 0 s canFam3.chr9 21378899 11 + 61074082 gaataatccag i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358030 11 - 852752 gaAAAATCCAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I a score=3063633.000000 s hg38.chr17_GL383564v2_alt 52343 252 + 133151 gctgcccaagaggagata----gggaACTCTTCTCAGATGC----------AAAGAGGAGGATTCCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGG----GATGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCCGTTTCT s panTro5.chr17 16246240 256 + 83181570 GCTGCCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTCCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGATGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAGTTTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153725 256 + 83442489 gctgcccaagaggagata----gggaactcttctcagatgc----------aaagaggaggattccagta---cttgggtgtttcagtctgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGATGAAAGTGAAGATGTGATGGGAAGTGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAGTTTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988746 256 + 4267968 gctgcccaagaggagata----gggaactcttctcagatgc----------aaagaggaggattccagta---cttgggtgtttcagtctgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGAG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGATGTGATGAAAGTGAAGATGTGATGGGAAGCGGGGAAGGACTTGCATATGCCAAGGAATTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAGTTTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969143 256 - 2193130 gctgcccaagaggagata----gggaactcttctcagaTGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TACGGCTGGG--CATGCAGTACCTCCAAGGGTGTGATGACAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAGTTTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041695 253 - 77216781 gctgcccaagaggagata----gggaactcttctcagatgc----------aaagaggaggatttcagta---cttgggtgtttcagtctgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGACGTGACGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAGTTTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954304 253 - 80997621 GCTGCCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGACGTGACGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAGTTTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010546 253 + 10377808 GCTGCCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGACGTGACGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAGTTTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897663 253 - 8458610 gctgcccaagagcagata----gggaactcttctcagatgc----------aaagaggaggatttcagta---cttgggtgtttcagtttgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAGTTTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853401 253 + 75148670 GCTGCCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TATAAG---GTTTCAGTTTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076846 253 + 4244037 GCTGCCCAAGAGCAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATGTGATGGGAAGTGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAGTTTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104710 253 + 4569836 gctgcccaagaggagatg----gggaACTCTTCTCAGATGC----------AAAGAGGACGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCTGGG--CACGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATCTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACCTAGTCTTGTAGAAGG-TGTAAG---GTTTCAGTTTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065383 259 - 159171411 TCTGTCCAAGAGGAGATAGATGGGGAACTCTTCTCAGATGC----------AAAGGGGAGGATTTCAGTA---CTTGGGTGTTTCAGACTGAGGG-AAAGATTGAAAAAAGACACAGAAGTGGCAGAGCAGGGTATATCTGGA-----------------TATGGCTGGG--CATGCAGTACTTACAAGGGTGTGATGAAAGTGAAGATGTGATGGGACGTGATGAAGGACTTGCATATGCCAAGGAGTTTAGACTTGGTCTTGTAGAAGA-TGTGGGGTCGTTTCAGTTTCT i calJac3.chr5 C 0 I 5 s saiBol1.JH378271 1787797 260 + 3513951 TCTGCCCAAGAGGAGATAGATGGGCAACTCTTCTCAGATGC----------AAAGAGAAGGATTTCAGTA---CTTGGGTGTTTCAGACTGAGGGAAAAGGTTGAACAAAGACACAGAAGTGGCAGAGCAGGGTATATCTGGG-----------------TATGGCTGGG--CATGCAGTACCTACAAGGGTGTGACGAAAGTGAAGATATGATGGGAAGCAATGAAGGACTTGCATATGCCAAGGAGTTTAGACTTGGTCTTGCAGAAGA-TGCGGGGTCGTTTCAGTTTCT i saiBol1.JH378271 C 0 I 5 s cebCap1.NW_016107730v1 1836709 255 + 1920343 TCTGCCCAAGAGGAGATAGATGGGGAATTCTTCTCAGATGC----------AAAGAGG-----TTCAGTA---CTTGGGTGTTTCAGACTGAGGGAAAAGGTTGAACAATGACACAGAAGTGGCAGAGCAGGGTATATCTGGG-----------------TATGGCTGGG--CATGTAGTACCTACAAGGGTGTGATGAAAGTGAAGATGTGATGGGAATCGATGAAGGACTTGCATATGCCAAGGAGTTTAGACTTGGTCTTGTAGAAGA-TGTGGGGTCGTTTCAGTTTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951505 260 - 7032639 tctgcccaagaggagatagacggggaactcttctcagatgc----------aaagaggaggatttcagta---cttgggtgtttcagactgagggaaaaggttgaactaagacacagacgtggcagagcagggtgtatctggg-----------------tgtggctggg--catgcagtgcctacgagggtgtgatgaaagtgaagatgtgatgggaagccatgaaggactggcATATGCCAAGGAGTTTAGACTTGGTCTTATAGAAGA-TGTGGGGTCGTTTCAGTTTCT i aotNan1.NW_018502359v1 I 2010 C 0 s otoGar3.GL873537 22761002 222 + 28711273 GCTGTGGGAGAGGAGGTG----AGC--CTTAGCTCAGCTGC----------TAGGAGGAGTCTTTCAGTC---CTTGGGTGTTTCAG-CTGGGGG---------AGCAAAGGCACAGCAGTGGCAGAGCAGGGCATATCTGAG-----------------GTTGGCTGGGGCCACATAGTACCTATG------------------GGACTTGATGGGATGTAAGGCAGGACTTGCACCTTCCAAG---TCCTACCTTAATCTTATGGGAAA-CGTGAC---ATTTCAGCTTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043018 223 - 122082543 ACTTCCAAAGAGGAGCTG----GGGAGCACGTCTCAGAGGC----------AAGAGAGAGATTTCGATTAACCCGTGAGTGTTGCCATTTGAGGGTGTAGGCTGTACAA------AGAAGTGCTGAAGCAAGGCATATTTAAG-----------------TAAGGCTAAG--AATTTGTTACC--CAAAGGAGTGGCAGCCATCAGG-------------------AGGAATTGCAGGTATCAAGGA--------CAAGTGTT--AGAAGGCTGTGACAGCGTTTCAGCTTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21378910 263 + 61074082 tctacctggaaagagata----aggaattcttctcagaggCATGTCATGGGAAGAAAGAAGATTTCA-CA---TTTGTGTGTTTCAATCTGGGGGAAAATGCTGAGCAAAGACACAGAAGTGGTAGAGCA-GGTATA-CTGGGTTTGGCCCATGAGTTGATATGGCTGGG--TATGTATTACCTATAGGG-----------------ATGTGATGGAAAATGAGGTAGGACCTGCACTTGCCAGGGGGTTTGGACTTAGTCTTATTGGAAA-TGTGAGCTTCTTTCAGGTTTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358041 230 - 852752 TTTACCCGAAAGGAGGTA----GGCAACTCTTCTCAGAGGCGTATCTTG--AAAAAGGAGTATTTCAATG---CTTGAATGTTCTAGTCTGAGGGATGAGGCTAAGCAAAGTTATGGAAGTGGCTGAGTAGAGCATATTTGAGTGTTGCCAATGGAACAGTACAGCTGGG--CAGGCAGTACCTATAGGAATATGATGC-------------------------------------------------TTGGCACTTACTCCTTTAGAGAA-TGTGAGGT-TTTCCAGTTTT- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I a score=-1918.000000 s hg38.chr17_GL383564v2_alt 52595 1 + 133151 -A s panTro5.chr17 16246496 1 + 83181570 -A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153981 1 + 83442489 -A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989002 1 + 4267968 -A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969399 1 - 2193130 -A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954557 1 - 80997621 -A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010799 1 + 10377808 -A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897916 1 - 8458610 -A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853654 1 + 75148670 -A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077099 1 + 4244037 -A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104963 1 + 4569836 -A i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1836964 1 + 1920343 -A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951765 1 - 7032639 -A i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22761224 1 + 28711273 -T i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379173 1 + 61074082 -G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358271 1 - 852752 T- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043241 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e saiBol1.JH378271 1788057 5 + 3513951 I e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=8281.000000 s hg38.chr17_GL383564v2_alt 52596 1 + 133151 T s panTro5.chr17 16246497 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153982 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989003 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969400 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954558 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010800 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897917 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853655 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077100 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104964 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1836965 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951766 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22761225 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22043241 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379174 0 + 61074082 C e saiBol1.JH378271 1788057 5 + 3513951 I e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=32100.000000 s hg38.chr17_GL383564v2_alt 52597 3 + 133151 GGG s panTro5.chr17 16246498 3 + 83181570 GGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153983 3 + 83442489 GGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989004 3 + 4267968 GGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969401 3 - 2193130 GGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954559 3 - 80997621 GGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010801 3 + 10377808 GGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897918 3 - 8458610 GGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853656 3 + 75148670 GGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077101 3 + 4244037 GGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104965 3 + 4569836 GGG i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1836966 3 + 1920343 GGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951767 3 - 7032639 GGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22761226 3 + 28711273 GGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043241 1 - 122082543 --G i mm10.chr11 C 0 I 4 s canFam3.chr9 21379174 3 + 61074082 GGG i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e saiBol1.JH378271 1788057 5 + 3513951 I e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=9555.000000 s hg38.chr17_GL383564v2_alt 52600 1 + 133151 A s panTro5.chr17 16246501 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153986 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989007 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969404 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954562 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010804 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897921 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853659 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077104 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104968 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1836969 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951770 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 I 3 s mm10.chr11 22043246 1 - 122082543 A i mm10.chr11 I 4 C 0 s canFam3.chr9 21379177 1 + 61074082 A i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e saiBol1.JH378271 1788057 5 + 3513951 I e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=7401.000000 s hg38.chr17_GL383564v2_alt 52601 2 + 133151 CA- s panTro5.chr17 16246502 2 + 83181570 CA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153987 2 + 83442489 CA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989008 2 + 4267968 CA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969405 2 - 2193130 CA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954563 2 - 80997621 CA- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010805 2 + 10377808 CA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897922 2 - 8458610 CA- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853660 2 + 75148670 CA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077105 2 + 4244037 CA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104969 2 + 4569836 CA- i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1836970 2 + 1920343 CA- i cebCap1.NW_016107730v1 C 0 C 0 s mm10.chr11 22043247 2 - 122082543 GA- i mm10.chr11 C 0 C 0 s canFam3.chr9 21379178 2 + 61074082 -AA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e saiBol1.JH378271 1788057 5 + 3513951 I e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=9090.000000 s hg38.chr17_GL383564v2_alt 52603 1 + 133151 A s panTro5.chr17 16246504 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153989 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989010 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969407 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954565 1 - 80997621 A i macFas5.chr16 C 0 I 74 s macNem1.NW_012014910v1 2010807 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897924 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853662 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077107 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104971 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065647 1 - 159171411 A i calJac3.chr5 I 5 C 0 s saiBol1.JH378271 1788062 1 + 3513951 A i saiBol1.JH378271 I 5 C 0 s cebCap1.NW_016107730v1 1836972 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s mm10.chr11 22043249 1 - 122082543 A i mm10.chr11 C 0 I 1 s canFam3.chr9 21379180 1 + 61074082 G i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e rheMac8.chr16 30041948 0 - 77216781 C a score=-880.000000 s hg38.chr17_GL383564v2_alt 52604 1 + 133151 -C s panTro5.chr17 16246505 1 + 83181570 -C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153990 1 + 83442489 -C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989011 1 + 4267968 -C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969408 1 - 2193130 -C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065648 1 - 159171411 -C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788063 1 + 3513951 -C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836973 1 + 1920343 -C i cebCap1.NW_016107730v1 C 0 C 0 s canFam3.chr9 21379181 1 + 61074082 A- i canFam3.chr9 C 0 C 0 e mm10.chr11 22043250 1 - 122082543 I e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=5576.000000 s hg38.chr17_GL383564v2_alt 52605 2 + 133151 AA s panTro5.chr17 16246506 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153991 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989012 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969409 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065649 2 - 159171411 AA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788064 2 + 3513951 AA i saiBol1.JH378271 C 0 C 0 s mm10.chr11 22043251 2 - 122082543 GA i mm10.chr11 I 1 C 0 s canFam3.chr9 21379182 2 + 61074082 AA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e cebCap1.NW_016107730v1 1836974 0 + 1920343 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=4095.000000 s hg38.chr17_GL383564v2_alt 52607 1 + 133151 T s panTro5.chr17 16246508 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153993 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989014 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969411 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065651 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788066 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6951774 1 - 7032639 T i aotNan1.NW_018502359v1 I 3 C 0 s mm10.chr11 22043253 1 - 122082543 T i mm10.chr11 C 0 I 2 s canFam3.chr9 21379184 1 + 61074082 T i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e cebCap1.NW_016107730v1 1836974 0 + 1920343 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=287402.000000 s hg38.chr17_GL383564v2_alt 52608 85 + 133151 TGACGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGTGTCAC---TCTTTGGGAATGATCAGAATCTTCCTTTTAGTGCtttt s panTro5.chr17 16246509 83 + 83181570 TGACGTGATCCCTGTTGG-AGTTTATTGCTATAAAA--TGTGTGTCAC---TCTTTGGGAATGATCAGAATCTTCCTTTTAGTGCtttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153994 83 + 83442489 TGACGTGATCCCTGTTGG-AGTTTATTGCTATAAAA--TGTGTGTCAC---TCTTTGGGAATGATCAGAATCTTCCTTTTAGTGCtttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989015 86 + 4267968 TGATGTGATCCCTGTTGG-AGTTTATTGCTATAAAA--TGTGTGTTTTTCGTCTTTGGGAATGATCAGAATCTTCCTTTTAGTGCtttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969412 85 - 2193130 TGATGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGTGTCAC---TCTTTGGGAATTATCAGAGTCTTCCTTTTAGTGCtttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065652 85 - 159171411 TGATGTGATCCCTGTTTG-AGTTTATTGCTATGAAATGTGTGTGTCAC---TCTTTGGGAATGATCAGAATATTCCTTTTAGTGCTTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788067 85 + 3513951 TGATGTGATCCCTGTTTT-AGTTTATTGCTAGGAAATGTGTGTGTCAC---TCTTTGGGAATGCTCAGAATATTCCTTTTAGTGATTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836974 85 + 1920343 TGATGTGATCCTTATTTG-AGTTTATTGCTATGAAATGTGTGTGTCAC---TCTTTGGGAATGATCAGAATATTTCTTTTAGTGCTTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951775 85 - 7032639 TGATATGATCCCTGTTTG-AGTTTATTGCTATGAAATGTGTGTGTTAC---TCTTTGGGAATGATCAGAATATTCCTTTTAGTGCTTTT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22043256 61 - 122082543 GGCTGTGGTTCCTTTTGGAAGTTTGTTG-----AGA--TGTCTGCAAC---TTT---GGAATGATCCGGATATT--------------- i mm10.chr11 I 2 C 0 s canFam3.chr9 21379185 85 + 61074082 TGATGTGATCCCTTTTTG-GGTTTATTCCTACATCATATCTGTGTCAG---TCTTGGGGAATGATCAGGATATTCCCTTCAGTGCATTT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=2548.000000 s hg38.chr17_GL383564v2_alt 52693 1 + 133151 t s panTro5.chr17 16246592 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154077 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989101 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969497 1 - 2193130 t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s cebCap1.NW_016107730v1 1837059 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 T 86 s aotNan1.NW_018502359v1 6951860 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 T 90 s canFam3.chr9 21379270 1 + 61074082 T i canFam3.chr9 C 0 C 0 e mm10.chr11 22043317 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e saiBol1.JH378271 1788152 0 + 3513951 C e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=1365.000000 s hg38.chr17_GL383564v2_alt 52694 1 + 133151 t s panTro5.chr17 16246593 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154078 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989102 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969498 1 - 2193130 t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s canFam3.chr9 21379271 1 + 61074082 T i canFam3.chr9 C 0 T 98 e mm10.chr11 22043317 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788152 0 + 3513951 C e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=78979.000000 s hg38.chr17_GL383564v2_alt 52695 111 + 133151 ttt---ttttgacggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactccctggttcaagtgattcactt-gcctcagcctcct s panTro5.chr17 16246594 111 + 83181570 ttt---ttttgacggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactccctggttcaagtgattcactt-gcctcagcctcct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154079 110 + 83442489 ttt---ttgt-acggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactccctggttcaagtgattcactt-gcctcagcctcct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989103 108 + 4267968 ttt------tgacggagtcatactctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactgcctggttcaagtgattcactt-gcctcagcctcct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969499 115 - 2193130 ttttttttttgatggagtcgtactctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatctgactccctggttcaagtgattcacctgggttcagcctccc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s mm10.chr11 22043317 21 - 122082543 ----------------------------------------------------------------------------------TGGTTTTA------------Gcccctaccccct i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788152 0 + 3513951 C e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=101436.000000 s hg38.chr17_GL383564v2_alt 52806 113 + 133151 gagtagctgggattacaggcacatgccaccacgcccagctaatttttgtattgttagtagagatggggtttcaccatgttggctaggatggtttcgatctcctgacttcgtga s panTro5.chr17 16246705 113 + 83181570 gagtagctgggattacaggcacgtgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggctaggatggtttcgatctcctgacttcgtga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154189 113 + 83442489 gagtagctgggattacaggcacgtgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggctaggatggtttcgatctcctgacttcgtga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989211 113 + 4267968 gagtagctgggattacaggcacgtgccaccacgcccagctaatttttgtatttttagtagagacggggtttccccatgttggctaggatggtttcaatctcctgacttcgtga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969614 112 - 2193130 gagtagctgggattacaggcatgtgccaccacgcccagctaatttttgtatttttagtagagac-gggtttcaccatgttggctaggatggtttcgatctcctgacctcgtga i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22043338 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788152 0 + 3513951 C e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=55044.000000 s hg38.chr17_GL383564v2_alt 52919 60 + 133151 tccacctgcctctgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc s panTro5.chr17 16246818 60 + 83181570 tccacctgcctccgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154302 60 + 83442489 tccacctgcctccgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989324 60 + 4267968 tccacctgcctctgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969726 60 - 2193130 tccacttgcctctgccttccaaagtgctgggattacaggcttgagccaccgcacccggcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s mm10.chr11 22043338 26 - 122082543 tccccccgcctccccctcc----------------------------------cccaatc i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788152 0 + 3513951 C e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=20887.000000 s hg38.chr17_GL383564v2_alt 52979 15 + 133151 CCTTTTAGTGCTTTC s panTro5.chr17 16246878 15 + 83181570 CCTTTTAGTGCTTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154362 15 + 83442489 CCTTTTAGTGCTTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989384 15 + 4267968 CCTTTTAGTGCTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969786 15 - 2193130 CCTTTTAGTGCTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954640 15 - 80997621 CCTTTCAGTGCTTTT i macFas5.chr16 I 74 C 0 s mm10.chr11 22043364 15 - 122082543 ccttccTAGGTATTC i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788152 0 + 3513951 C e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=100413.000000 s hg38.chr17_GL383564v2_alt 52994 42 + 133151 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA s panTro5.chr17 16246893 42 + 83181570 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154377 42 + 83442489 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989399 42 + 4267968 TGGGCAGCATCAGGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969801 42 - 2193130 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954655 42 - 80997621 TGGGCAGTATTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCA i macFas5.chr16 C 0 C 0 s calJac3.chr5 46065737 44 - 159171411 TGGGCAGCATCATGCTCATTTTTCCTGGAGCGGTAAAGATGGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788152 42 + 3513951 TGGGCAGTATCGTGCTCA-TTTTCCTGGAGGGGT-AAGATGGCA i saiBol1.JH378271 C 0 C 0 s mm10.chr11 22043379 42 - 122082543 TAGGTAGCACAGTACTCA-CTTCCCTGAAGCAGG-AAGAGAACA i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=7096.000000 s hg38.chr17_GL383564v2_alt 53036 4 + 133151 CATC s panTro5.chr17 16246935 4 + 83181570 CATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154419 4 + 83442489 CATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989441 4 + 4267968 CATC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969843 4 - 2193130 GATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954697 4 - 80997621 GATC i macFas5.chr16 C 0 T 135 s calJac3.chr5 46065781 4 - 159171411 GATC i calJac3.chr5 C 0 T 143 s saiBol1.JH378271 1788194 4 + 3513951 GATC i saiBol1.JH378271 C 0 T 141 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=3025.000000 s hg38.chr17_GL383564v2_alt 53040 4 + 133151 TTCC s panTro5.chr17 16246939 4 + 83181570 TTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154423 4 + 83442489 TTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989445 4 + 4267968 TTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969847 4 - 2193130 TTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788198 141 + 3513951 T e calJac3.chr5 46065785 143 - 159171411 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954701 135 - 80997621 T a score=1113.000000 s hg38.chr17_GL383564v2_alt 53044 1 + 133151 A s panTro5.chr17 16246943 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154427 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989449 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969851 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041948 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s calJac3.chr5 46065642 1 - 159171411 C i calJac3.chr5 T 143 C 0 s saiBol1.JH378271 1788057 1 + 3513951 A i saiBol1.JH378271 T 141 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e macFas5.chr16 27954701 135 - 80997621 T a score=3276.000000 s hg38.chr17_GL383564v2_alt 53045 1 + 133151 T s panTro5.chr17 16246944 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154428 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989450 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969852 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041949 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s calJac3.chr5 46065643 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788058 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s dasNov3.JH570468 358272 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22761229 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e macFas5.chr16 27954701 135 - 80997621 T a score=17798.000000 s hg38.chr17_GL383564v2_alt 53046 7 + 133151 GGGACAG s panTro5.chr17 16246945 7 + 83181570 GGGACAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154429 7 + 83442489 GGGACAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989451 7 + 4267968 GGGACAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969853 7 - 2193130 GGGACAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041950 7 - 77216781 GGGACAG i rheMac8.chr16 C 0 C 0 s calJac3.chr5 46065644 4 - 159171411 GGGA--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788059 4 + 3513951 GGGA--- i saiBol1.JH378271 C 0 C 0 s otoGar3.GL873537 22761229 7 + 28711273 GGGAAAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379174 7 + 61074082 GGGAAAG i canFam3.chr9 T 98 C 0 s dasNov3.JH570468 358273 7 - 852752 GAGACAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e macFas5.chr16 27954701 135 - 80997621 T a score=44012.000000 s hg38.chr17_GL383564v2_alt 53053 4 + 133151 CAAT s panTro5.chr17 16246952 4 + 83181570 CAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154436 4 + 83442489 CAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989458 4 + 4267968 CAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969860 4 - 2193130 CAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041957 4 - 77216781 CAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954566 4 - 80997621 CAAT i macFas5.chr16 T 135 C 0 s macNem1.NW_012014910v1 2010808 4 + 10377808 CAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897925 4 - 8458610 CAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853663 4 + 75148670 CAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077108 4 + 4244037 CAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104972 4 + 4569836 CAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065648 4 - 159171411 CAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788063 4 + 3513951 CAAT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6951771 4 - 7032639 CAAT i aotNan1.NW_018502359v1 T 90 C 0 s otoGar3.GL873537 22761236 2 + 28711273 --GT i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21379181 4 + 61074082 AAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358280 4 - 852752 GAAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I e cebCap1.NW_016107730v1 1837060 86 + 1920343 T a score=1211413.000000 s hg38.chr17_GL383564v2_alt 53057 94 + 133151 TGATGTGATCCCTGTTGGAGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTGCTTTTTGGGCAGTA s panTro5.chr17 16246956 94 + 83181570 TGATGTGATCCCTGTTGGAGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTGCTTTTTGGGCAGTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154440 94 + 83442489 TGATGTGATCCCTGTTGGAGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTGCTTTTTGGGCAGTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989462 94 + 4267968 TGATGTGATCCCTGTTGGAGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTGCTTTTTGGGCAGTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969864 94 - 2193130 TGATGTGATCTCTGTAGGAGTTTACTGCTATAAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTACTTTTTGGGCAGTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041961 94 - 77216781 TGATGTGATCCCTGTTGGTGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGAAATGATCAGA----ATATTCCTTTCAGTGCTTTTTGGGCAGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954570 94 - 80997621 TGATGTGATCCCTGTTGGTGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGAAATGATCAGA----ATATTCCTTTCAGTGCTTTTTGGGCAGTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010812 94 + 10377808 TGATGTGATCCCTGTTGGTGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGAAATGATCAGA----ATATTCCTTTCAGTGCTTTTTGGGCAGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897929 94 - 8458610 CGATGTGATCCCTGTTGGTGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGAAATGATCAGA----ATATTCCTTTCAGTGCTTTTTGGGCAGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853667 94 + 75148670 TGATGTGATCCCTGTTGGTGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGAAATGATCAGA----CTATTCCTTTCAGTGCTTTTTGGGCAGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077112 94 + 4244037 CGATGTGATCCCTGTTGGTGTTTATTGCTATAAAATG-TGTGTGTCACTCTTTGGAAATGATCAGA----ATATTCCTTTCAGTGCTTTTTGGGCAGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104976 94 + 4569836 TGATGTGATCTCTGTTGGAGTTTATTGCTATAAAATG-TGTGTgtcactctttggaaatgatcaga----atattcctttcagtgctttttgggcagta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065652 94 - 159171411 TGATGTGATCCCTGTTTGAGTTTATTGCTATGAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTGCTTTTTGGGCAGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788067 94 + 3513951 TGATGTGATCCCTGTTTTAGTTTATTGCTAGGAAATG-TGTGTGTCACTCTTTGGGAATGCTCAGA----ATATTCCTTTTAGTGATTTTTGGGCAGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836974 94 + 1920343 TGATGTGATCCTTATTTGAGTTTATTGCTATGAAATG-TGTGTGTCACTCTTTGGGAATGATCAGA----ATATTTCTTTTAGTGCTTTTTGGGCAGCA i cebCap1.NW_016107730v1 T 86 C 0 s aotNan1.NW_018502359v1 6951775 94 - 7032639 TGATATGATCCCTGTTTGAGTTTATTGCTATGAAATG-TGTGTGTTACTCTTTGGGAATGATCAGA----ATATTCCTTTTAGTGCTTTTTGGGCAGCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22761240 99 + 28711273 TGATGTGATCCCTATTCAGGTTAACTGGTACTATGTGAAATGTGTTAATCTTTGGGAATGATCAGGATGTATGTATATTTCAGTGCTTTTTTGGCAGGG i otoGar3.GL873537 I 2 C 0 s canFam3.chr9 21379185 94 + 61074082 TGATGTGATCCCTTTTTGGGTTTATTCCTACATCATA-TCTGTGTCAGTCTTGGGGAATGATCAGG----ATATTCCCTTCAGTGCATTTTTGTCAGGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358284 94 - 852752 TGATGTGATCCCTATTTGAGTTTAATCCTATATATTA-TGTGAATCAGTCTTTGGGAATGATGAGA----ATATTTCCTTTAATGCATTCCTGGCAAGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I e micMur3.chr16 35878593 784 - 65901067 I a score=377479.000000 s hg38.chr17_GL383564v2_alt 53151 33 + 133151 TTGTGCTCA-TTTCCCTGGAGCAGG-AAAATGGCA s panTro5.chr17 16247050 33 + 83181570 TTGTGCTCA-TTTCCCTGGAGCAGG-AAAATGGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154534 33 + 83442489 TTGTGCTCA-TTTCCCTGGAGCAGG-AAAATGGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989556 33 + 4267968 TCGTGCTCA-TTTCCCTGGAGCAGG-AAAATGGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969958 33 - 2193130 TTGTGCTCA-TTTTCCTGGAGCAGG-AAAATGGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042055 33 - 77216781 TTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954664 33 - 80997621 TTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010906 33 + 10377808 TTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898023 33 - 8458610 TTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853761 33 + 75148670 TTGTGCTCA-GTTTCCTGGCGCAGG-AAAATGGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077206 33 + 4244037 TTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105070 18 + 4569836 ttgtgctcc-----------------aaaatggca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065746 35 - 159171411 TCATGCTCATTTTTCCTGGAGCGGTAAAGATGGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788161 33 + 3513951 TCGTGCTCA-TTTTCCTGGAGGGGT-AAGATGGCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837068 33 + 1920343 TGGTGCTCA-TTTTCCTGGAGCGGT-AAGATGGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951869 33 - 7032639 TCGTGCTCA-TTTTCCTGGAGCGGT-AAGATGGCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879377 33 - 65901067 TTGTGCTCA-CTTTCCCAGAGCAGG-AAGATAGCA i micMur3.chr16 I 784 C 0 s otoGar3.GL873537 22761339 33 + 28711273 TTGTGCTTA-CTTGCTTAGAGCAGG-AAGATAGTA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379279 33 + 61074082 TTGTACTCA-CTTTCCTACAATAGG-AAGATAGAC i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 358378 33 - 852752 TAGTGCTTA-CTTTCTTATGGTACT-AAGATAGCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 0 - 122082543 C e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I a score=427604.000000 s hg38.chr17_GL383564v2_alt 53184 33 + 133151 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT s panTro5.chr17 16247083 33 + 83181570 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154567 33 + 83442489 GATCCA-TTGCCGCAGGTTCATTGTTTCCCTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989589 34 + 4267968 GATCCATTTGCCGTAGGTTCATTGTTTCCCTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969991 33 - 2193130 GATCCA-TTGCTATAGGTTCATTGTTTCCCTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042088 33 - 77216781 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954697 33 - 80997621 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010939 33 + 10377808 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898056 33 - 8458610 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853794 33 + 75148670 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077239 33 + 4244037 GATCCA-TTGCCGTAGGTTCATTGTTTCCCTTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105088 33 + 4569836 gatcca-ttgctgTAGGTTCATTGTTTCCCTTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065781 30 - 159171411 GATCCA-TTGCCATAGAT---TTCATTTCCTTTT i calJac3.chr5 C 0 N 0 s saiBol1.JH378271 1788194 33 + 3513951 GATCCA-TTGCCATAGATTCATTCCTTTTCTTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837101 33 + 1920343 GATCCA-TTGCCATAGATTCATCCCTTTTCTTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951902 33 - 7032639 GATCCA-TTGCCATAGATTCATTCCTTTTCTTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879410 33 - 65901067 GAGCCA-CTGCTGTGGGTTCATTCTTGTCCCTTT i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22761372 32 + 28711273 GATCCA-CTGCTGTGGG-TCAATCTTTCCCCTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043421 33 - 122082543 GATCTG-TCTTCATAGGCTCATTCTTTCTCCTTC i mm10.chr11 C 0 C 0 s canFam3.chr9 21379316 32 + 61074082 AATTCA-TTTCTGTGGCTCATTTATTTCTCTTC- i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 358411 33 - 852752 GATCCA-TTTCTGTGAGTTCATTCCTTCCACTTT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I a score=3852105.000000 s hg38.chr17_GL383564v2_alt 53217 253 + 133151 CTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACTAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAGGGCCCTGGAGACAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- s panTro5.chr17 16247116 253 + 83181570 CTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACTAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGACCCAGGGCCCTGGAGACAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154600 254 + 83442489 CTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACTAACCGCAAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGACCCAGGGCCCTGGAGACAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989623 253 + 4267968 CTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGATCGCCTCAATGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGG-ACCCGAGG--TGCCCCAGGGCCCTGGAGACAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970024 252 - 2193130 CTCCATCAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGG-ATCTGAGG--TGCCCCAGGGCCCTGGACACAGGGTCTGATCCT---TT--------------CC----C--AATTG---C- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042121 253 - 77216781 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954730 253 - 80997621 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010972 253 + 10377808 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCGGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898089 253 - 8458610 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853827 253 + 75148670 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAAGGCCTTGGAGGCAGGGTCTGATCCT---TT-------------CCT----C--ACTTG---G- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077272 253 + 4244037 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACACAGGTGGGCA--TCTAAGCACATGGCCACTCAGG-ACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CCC----C--ACTTG---G- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105121 253 + 4569836 CTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCAC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGG-ACCCGAGG--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CTC----C--CTTTG---G- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 45942400 251 - 159171411 CTCTG-CAGGAAGTCAGTGCACTACGTTGCCAACTTGGGGACCGACTGAATGTGGAGGTGGATGCTGCCCCCCCAGTGGATCTCAACAGGATCCTGGAGGATATGAGATGCCAGTACGAGGCCCTGGTGGAGAATAACCGA-AGAGATGTGGAGGCCTGGTTCAACACCCAGGTGGG-------------------GCTGGGGTGCCCTGGGACCAC----AGGTTCCTGAGCTGGGG--TTACCCT---TTGAATTAACACATGCTCTGAGC--CCTCGCA-T- i calJac3.chr5 N 0 C 0 s saiBol1.JH378271 1788227 255 + 3513951 CTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTGGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAATGAGACCAGGAGTCAGTACGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGCAGTCACTCAGG-ACCCGAGGACCACCCCAGGGCCCCGGAGGCAGGGGCTGATCCT---TT-------------CTC----C--CCTTG---G- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837134 258 + 1920343 CTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTGAATCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGCACGCAGTCACTCAGG-ACCTGAGGACCACCCCAGGGCCCTGGAAGCAGGGTCTGATCCT---TT-------------CTC----C--CCTTGGGTG- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951935 255 - 7032639 CTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACACAGGTGAGCA--TCTAAGCACGCAATCACTCAGG-ACCCGAGGACCACCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TT-------------CTC----C--CCTTG---G- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879443 256 - 65901067 CTCCATCAGGAAGTCAACACCCTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCACCGTGGACCTGAACCAGGTGCTGAACGAGACCAGGAGCCAGTACGAGGCCCTGGTGGAGACCAACCGC-AGGGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGTGTCTCTCAGCATGTGGCCACTC--G-ACCCCAGA--CCCCCCAGGGCCCTCGAGGCAGGGTCTGATCCTGCGTC-------------CTC----C--CCTTG---C- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22761404 255 + 28711273 CTCCATCAGGAAGTCAAAAGTCTGAGCACCCAGCTTGGACACCGCCTCAATGTGGAGGTGGACGCTGCCCCCGCCTTGGACCTGATCCAGGTTCTGAACAAGACTAGAAGTCAATACGAGACCCTGATGGACACCAACCAC-AGGAAAGTGGAGGAATGGTTCACCAGGCAGGTGGGCA--TCTAAGCTTGTGGCCACTCA-G-ACCCCAGA--GCCCCCAGGGTCCCTAAGACAGTATCTGATCCTGTCTC-------------CTC----C--CCTTG---G- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043454 252 - 122082543 CCCCACCAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTGCTCAACGAGACCAGGTGTCAGTACGAGGCCCTGGTGGAAACCAACCGC-CGGGAAGTGGAGGAATGGTTCACCACACAGGTGGGCA--TCTGAGCCCAGGGTTGCTCAGC-AACTGAGT----CCCCAGGACTGT-AAGGCAGGGTCTGATTCTGT-CC-------------CTC----C--CCTTA---C- i mm10.chr11 C 0 C 0 s canFam3.chr9 21379348 255 + 61074082 GTCCATTAGGAAGTCAACACCCTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCCACAGTGGACCTGAACCGTGTGCTCAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAGACCAACCGC-AGGGACGTGGAGGAATGGTTCACCACCCAGGTGGGCA--TCTCAGCACGTGGCCACTCAGG-ACCTTTGG--CCCCTTGGGGCCCTTGAGGCAGGGTCTGACCCT---GT-------------CCT----CTTCCCTG---T- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 358444 256 - 852752 TTCTATCAGGAAGCCAACTCCCTGCGTAGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGACGCGGCGCCCACCGTGGACCTGAACCGTGTGCTGAACGAGACCAGGTGCCAGTACGAGGCCCTGGTGGAGACCAACCGC-AGGGACGTGGAGGAGTGGTTCACCACGCAGGTGGGCG--CCTAGGCGCATGGCCACGCAGG-ACCGCAG---TCCCTCGGGGCCCTGGAGGCAGCGCCTGATCCTGGCTT-------------CTC----C--CCTTT---GG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2870947 1188 + 8555354 I a score=678275.000000 s hg38.chr17_GL383564v2_alt 53470 34 + 133151 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG s panTro5.chr17 16247369 34 + 83181570 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154854 34 + 83442489 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGCGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989876 34 + 4267968 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970276 34 - 2193130 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042374 34 - 77216781 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954983 34 - 80997621 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011225 34 + 10377808 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898342 34 - 8458610 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854080 34 + 75148670 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077525 34 + 4244037 GTGTTTCAGACTGAGGAGCTGAGCAAGCAGGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105374 34 + 4569836 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 45942651 34 - 159171411 GTGTTTCAGACTGAGGAGCTGAACCAGCAGGTGG i calJac3.chr5 C 0 N 0 s saiBol1.JH378271 1788482 34 + 3513951 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837392 34 + 1920343 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952190 34 - 7032639 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879699 34 - 65901067 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2872135 34 + 8555354 GTGTTTCAGACCGAGGAGCTGAACCAGCAAGTGG i proCoq1.NW_012135969v1 I 1188 C 0 s otoGar3.GL873537 22761659 34 + 28711273 ATTTTTCAGACTGAGAAGCTGAACAAGCAGGTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043706 34 - 122082543 CTATTGCAGTCAGAGGAGCTGAACAAGCAGGTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21379604 34 + 61074082 CTGTTTCAGACTGAGGAGCTGAACAAGCAGGTGG i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 358700 34 - 852752 ACATTTCAGACCGAGGAGCTCAACAAGCAGGTGG i dasNov3.JH570468 C 0 C 0 a score=2092569.000000 s hg38.chr17_GL383564v2_alt 53504 104 + 133151 TATCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG s panTro5.chr17 16247403 104 + 83181570 TATCCAGCTCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154888 104 + 83442489 TATCCAGCTCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989910 104 + 4267968 TATCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATTATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970310 104 - 2193130 TATCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATAGAGCTACAGGCCCAGCACAACCTGGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042408 104 - 77216781 TATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955017 104 - 80997621 TATCCAGCGCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011259 104 + 10377808 TATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898376 104 - 8458610 TATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854114 104 + 75148670 TATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077559 104 + 4244037 TATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105408 104 + 4569836 TATCCAGTGCAGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066445 104 - 159171411 TGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i calJac3.chr5 N 0 C 0 s saiBol1.JH378271 1788516 104 + 3513951 TGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837426 104 + 1920343 TGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952224 104 - 7032639 TGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879733 104 - 65901067 TGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGCGCCGCATGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2872169 104 + 8555354 TATCTAGCTCGGAGCAGCTGCAGTGCTGCCAGACGGAGATCATCGAGCTGCGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAGCATGGTG i proCoq1.NW_012135969v1 C 0 I 78413 s otoGar3.GL873537 22761693 104 + 28711273 TGTCCAGCTCAAAGCAGCTGCAGTCCTGCCAGGTGGAGGCCATTAAGCTGAGACCCACGGTCAATGAGCTGGAGAGTGAGCTGCAGACCCAGCACAACCTAGTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043740 104 - 122082543 TGTCCAGCTCAGAGCAGCTACAGTCCTGCCAGGCTGAGATCATCGAGCTAAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACTGCATGGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21379638 104 + 61074082 TGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAATGCCTTGGAGATTGAGCTCCAGGCCCAGCACAACCTGGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358734 104 - 852752 TGTCCAGCTCGGAGCAGCTGCAGTCCTCCCAGGCTGAGATCATCGAGCTGAGGCGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i dasNov3.JH570468 C 0 C 0 a score=194724.000000 s hg38.chr17_GL383564v2_alt 53608 12 + 133151 TGTATTGTTCAG s panTro5.chr17 16247507 12 + 83181570 TGTATTGTTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154992 12 + 83442489 TGTATTGTTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990014 12 + 4267968 TGTATTGTTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970414 12 - 2193130 TGTATTGTTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042512 12 - 77216781 TGTATTGTTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955121 12 - 80997621 TGTATTGTTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011363 12 + 10377808 TGTATTGTTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898480 12 - 8458610 TGTATTGTTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854218 12 + 75148670 TGTATTGTTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077663 12 + 4244037 TGTATTGTTCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105512 12 + 4569836 TGTATTGTTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066549 12 - 159171411 TGTATTGTTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788620 12 + 3513951 TGTATTGTTCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837530 12 + 1920343 TGTATTGTTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952328 12 - 7032639 TGTATTGTTCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879837 12 - 65901067 TGTGCTGCTCAG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22761797 12 + 28711273 AGTGTGGCTCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043844 12 - 122082543 TGTAGTGTCCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21379742 12 + 61074082 GGTGTTGTTCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358838 12 - 852752 TGTGTGACTCAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2872273 78413 + 8555354 I a score=198083.000000 s hg38.chr17_GL383564v2_alt 53620 16 + 133151 -----ACCTGCTGGTGAGCGA s panTro5.chr17 16247519 16 + 83181570 -----ACCTGCTGGTGAGCGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155004 16 + 83442489 -----ACCTGCTGGTGAGCGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990026 16 + 4267968 -----ACCTGCTGGTGAGCGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970426 16 - 2193130 -----ACCTGCTGGTGAGCGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042524 16 - 77216781 -----CCCTGCTGGTGAGCGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955133 16 - 80997621 -----CCCTGCTGGTGAGCGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011375 16 + 10377808 -----CCCTGCTGGTGAGCGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898492 16 - 8458610 -----CCCTGCTGGTGAGCGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854230 16 + 75148670 -----CCCTGCTGGTGAGCGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077675 16 + 4244037 -----CCCTGCTGGTGAGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105524 16 + 4569836 -----CCCTGCTGGTGAGTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066561 16 - 159171411 -----CCCTGCTGGTGAGCGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788632 16 + 3513951 -----CCCTGCTGATGAGCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837542 16 + 1920343 -----CCCTGCTGGTGAGCGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952340 16 - 7032639 -----CCCTGCTGGTGAGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879849 16 - 65901067 -----CCCTGCTGGGGAGCCG i micMur3.chr16 C 0 I 1 s otoGar3.GL873537 22761809 16 + 28711273 -----ACCAGCTAGAGAACAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043856 16 - 122082543 -----ACCTGCTGCTGAGCAG i mm10.chr11 C 0 I 7 s dasNov3.JH570468 358850 13 - 852752 ACCTGCCCTGCGG-------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2872273 78413 + 8555354 I e canFam3.chr9 21379754 0 + 61074082 C a score=144222.000000 s hg38.chr17_GL383564v2_alt 53636 13 + 133151 TGGGAA-------CTTGGGA- s panTro5.chr17 16247535 13 + 83181570 TGGGAA-------CTTGGGA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155020 13 + 83442489 TGGGAA-------CTTGGGA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990042 13 + 4267968 TGGGAA-------GTTGGGA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970442 13 - 2193130 TGGGAA-------GTTGGGA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042540 13 - 77216781 TGAGAA-------GTTGGGA- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955149 13 - 80997621 TGAGAA-------GTTGGGA- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011391 13 + 10377808 TGAGAA-------GTTGGGA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898508 13 - 8458610 TGAGAA-------GTTGGGA- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854246 13 + 75148670 TGAGAA-------GTTGGGA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077691 13 + 4244037 TGAGAA-------GTTGGGA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105540 13 + 4569836 TGGGAA-------GTTGGGA- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066577 13 - 159171411 TGGGAC-------GTTGGGA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788648 13 + 3513951 TCGGAC-------GTTGGGA- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837558 13 + 1920343 TGGGAC-------GTTGGGA- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952356 13 - 7032639 TGGGAC-------GTTGGGA- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879866 13 - 65901067 GGGCAG-------CCGGGGA- i micMur3.chr16 I 1 C 0 s proCoq1.NW_012135969v1 2950686 13 + 8555354 GGGGAG-------GCGGGGA- i proCoq1.NW_012135969v1 I 78413 C 0 s otoGar3.GL873537 22761825 13 + 28711273 GGGCAG-------GTCGGGA- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043879 13 - 122082543 TGTGGA-------GTGGGGA- i mm10.chr11 I 7 C 0 s dasNov3.JH570468 358863 21 - 852752 TGGGAAGGGCCGGGTTGGGGA i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21379754 0 + 61074082 C a score=2061876.000000 s hg38.chr17_GL383564v2_alt 53649 141 + 133151 GG--------CAGAGTCCCGGGGATGTGCTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGTAATCCTGTGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT s panTro5.chr17 16247548 141 + 83181570 GG--------CAGAGTCCCGGGGATGTGCTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGTAATCCTGTGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155033 141 + 83442489 GG--------CAGAGTCCCGGGGATGTGCTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTCGGAATCCTGTGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990055 141 + 4267968 GG--------CAGAGTCCTGGGGATGTGCTTGGGGCCACACACTCTC--------------CTTAGTTCTTGGAGCTTGTGACTTCCTTGTAATCCTGTGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970455 141 - 2193130 GG--------CAGAGTCCCAGGGATGTGCTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTGTGAAGAAACCCTTTGACGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042553 141 - 77216781 GA--------CAGAGTCCCAGGGATGTGTTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955162 141 - 80997621 GA--------CAGAGTCCCAGGGATGTGTTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011404 141 + 10377808 GA--------CAGAGTCCCAGGGATGTGTTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898521 141 - 8458610 GA--------CAGAGTTCCAGGGATGTGTTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854259 141 + 75148670 GA--------CAGAGTCCCAGGGATGTGTTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077704 141 + 4244037 GA--------CAGAGTCCCAGGGATGTGTTTGGGACCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105553 141 + 4569836 GG--------CAGAGTCCCAGGAATGTGTTTGGGGCCACACACTCTC--------------CTTAGCTCTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGA-GCAGCTCTCTGACATTCTTGATCTTCCCCACCA--------CAGCGAAACTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066590 140 - 159171411 GG--------CAGAGTCCCGGGGCTGCCCTTGGGACCACACGCTCTC--------------CTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAAGGCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788661 140 + 3513951 GG--------CAGAGTCCCAGGGCTGCCCTTGGGACCACACGCTCTC--------------CTTAGCTCTTGGAGC-TGTGATTTCCTTGGAATCCTATGAAGGAAGGCTTTGAAAGA-GCAGCCCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837571 140 + 1920343 GG--------CAGAGTCCCGGGGCTGCCCTTGGGACCACATGCTCTC--------------CTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAAGGCTTTGAAGGA-GCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952369 140 - 7032639 GG--------CAGAGTCCCGGGGCTGCCCTTGGGACCACACGCTCTC--------------CTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAATGCTTTGAAAGA-TCAGCCCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879879 138 - 65901067 GG--------TGGGGTCACGGGGATGCCCTTTGGGCCACAGGCTCTC--------------CTTAG-TGTTGGATCTTGTGAGTTCTTGGGACC-CCATGGAGAAATCCTTTAAAGGA-GCAGCTGTCTGACACGCTTTATGTCCCCC-TGA--------CAGAGAAACTCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950699 139 + 8555354 GG--------CGGAGTCACGGGGATGCCCTTTGGGCCACACGCTCTC--------------CTTAG-TCTTGGATCTGGTGAAGTCTTTGGACCTCCATGGAGAAACCCTTTAAAGGA-GCAGCTCTCTGACATGCTTCATCTCCCTC-TCA--------CAGAGAAACTCT i proCoq1.NW_012135969v1 C 0 T 78384 s otoGar3.GL873537 22761838 157 + 28711273 GGAGGGGTTCCAGGGTCATGGGGATGGTCTCTGGGGCACACAGTCTC--------------CTTAGCTCTGGGATCATGGGACATCTATGGAACACTACGGAGAAACCTTTTAAGGGGCAGAGCTATATGACATTCTTTATCTGTCCC-CCATCCATCCCCAGAGAAACTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043892 154 - 122082543 GG--------CAGAGTCACTGGGGTGTCCTTGGGGtctctctctctctctctgtctctctTCTTAGCTCTTGAAGCCTGTGACTTCTCTGGAAGTC-ATGCAGAAACCTTCAGAGGGA-ACAGCTCTGTGACAGCCTTTGTCTTCTCCCCCA--------CAGAGAAACTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21379754 118 + 61074082 GG--------TAGTGCCCAGG---------------------CTCTC--------------CTGAACCCATGAAGCCTGTGACTTCTCTGAAACCCCATGGAGAAGCCCCCTG-GGGA-GTGGCTCTGTGACATTCTTTGTCTTCCCCA-CA--------CAGAGGGACTCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358884 138 - 852752 --------ACGGGAGTCCTGGGCATCCCCTGGGGACCAGGCACTCTC--------------CTTAAC-CTGGACGCTTGTGGCTTCTTTGGAACCACGTAGAGAAAGGCTTAG-AGGA-GCCCCTCCCTGATGCCCTTCATGTT-CCCACCA--------CAGAGAAACTCC i dasNov3.JH570468 C 0 C 0 a score=1078213.000000 s hg38.chr17_GL383564v2_alt 53790 54 + 133151 CTGGAAAACACGCTGACGGAGAGCGAGGCCCACTACAGCTCCCAGCTGTCCCAG s panTro5.chr17 16247689 54 + 83181570 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155174 54 + 83442489 CTGGAAAACACGCTGACGGAGAGTGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990196 54 + 4267968 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970596 54 - 2193130 CTGGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCGCCCAGCTGTCCCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042694 54 - 77216781 CTGGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955303 54 - 80997621 CTGGAAAACACACTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011545 54 + 10377808 CTGGAAAACACACTGACGGAGAGCGAGGTCCGCTACAGCTCCCAGCTGTCCCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898662 54 - 8458610 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854400 54 + 75148670 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077845 54 + 4244037 CTTGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105694 54 + 4569836 CTGGAAAACACGCTGACGGAGAGTGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066730 54 - 159171411 CTGGAAAACACGCTGACAGAGAGCGAGGCCCGCTACAGCTCCCAGCTGGCCCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788801 54 + 3513951 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837711 54 + 1920343 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCACCCAGCTGTCCCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952509 54 - 7032639 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880017 54 - 65901067 CTGGAAAACACGCTGACGGAGAGCGAGGCCCGCTACAGCTCCCAGCTGTCCCAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2872454 54 + 8555354 CTGGAAAACACGCTGGCGGAGACAGAGGCCCGCTATGGCTCCCAGCTGGCCCAC i proCoq1.NW_012135969v1 T 78384 I 94342 s otoGar3.GL873537 22761995 54 + 28711273 CTGGAAAACACACTGACAGAGACCGAGGCCCGCTACAGTTCCCAGCTGGCTCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044046 54 - 122082543 CTGGAGAACACCCTGACAGAGAGTGAGGCTCGCTACAGCTCTCAGCTGTCCCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21379872 54 + 61074082 CTGGAGAACACGCTGACAGAGACTGAGGCCCGCTACGGCTCCCAGCTGGCCCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359022 54 - 852752 CTGGAAAACACGCTGAACGAGACCGAGGCCCGCTACAGCTCCCAGCTGGCCCAG i dasNov3.JH570468 C 0 C 0 a score=3187835.000000 s hg38.chr17_GL383564v2_alt 53844 166 + 133151 GTGCAGAGCCTGATCACCAACGTGGAGTCTCAGCTGGCAGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGTAT s panTro5.chr17 16247743 166 + 83181570 GTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATTAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155228 166 + 83442489 GTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATTAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990250 166 + 4267968 GTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970650 166 - 2193130 GTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCAGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACATACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042748 166 - 77216781 GTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955357 166 - 80997621 GTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011599 166 + 10377808 GTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898716 166 - 8458610 TTACAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854454 166 + 75148670 TTACAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077899 166 + 4244037 TTACAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105748 166 + 4569836 GTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066784 166 - 159171411 GTGCAGTGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGTGAGGACTGCAAGTGAGTGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788855 166 + 3513951 GTGCAGAGCATGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837765 166 + 1920343 GTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952563 166 - 7032639 GTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880071 166 - 65901067 GTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCCCGGCTGGAGTGCGAGATCAACACGTACCGGGCGCTGCTGGATGGGGAGGACTGCAAGTGAGTAT i micMur3.chr16 C 0 I 481 s proCoq1.NW_012135969v1 2966850 166 + 8555354 GTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCCGAGATCCGGGCCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTTCGGGCCCGGCTGGAGTGCGAGATCAACACATATCGGGGCCTGCTGGAGAGTGAGGACTGCAAGTGAGTTT i proCoq1.NW_012135969v1 I 94342 C 0 s otoGar3.GL873537 22762049 166 + 28711273 ATGCAGTACAGGGTGATCAACGTGGAGGCCCAGCTGGGGAATATCCGCCGTGACCTGGAACGGCAGAACCAGGAGTACGAGGTGCTACGGGATGTGCGGGCCTGGCTGGATGGTGAGATCAAAACATACCGGGACCTGCTGGAGAGCTAGGACTGCAAGTGAGTAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044100 166 - 122082543 GTGCAGTGCCTGATCACCAACGTGGAGTCTCAGCTTGGTGAGATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAGGTGCTGCTGGATGTCCGGGCCAGGCTGGAGTGTGAGATCAACACGTACAGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21379926 166 + 61074082 GTGCAGTACATGATCACCAACGTGGAGTCCCAGCTTGCTGAGATCAGGTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGTTGGACGTCAAGGCCCGGCTGGAGTGTGAGATCAACACATACCGGGGTCTGCTGGAGAGCGAGGACTGCAAGTGAGTGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359076 166 - 852752 TTGCAGTCCCTGATCAGCAGCGTGGAGTCCCAGCTGGCGGAGATCCGGGGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCCCGGCTGGAGGGTGAGATCAACACCTATCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTAT i dasNov3.JH570468 C 0 C 0 a score=182810.000000 s hg38.chr17_GL383564v2_alt 54010 14 + 133151 GGGGCAAATAATGT s panTro5.chr17 16247909 14 + 83181570 GGGGCAAATAATGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155394 14 + 83442489 GGGGCAAATAATGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990416 14 + 4267968 GGGGCAAATAATGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970816 14 - 2193130 GGGGCAAAGAATGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042914 14 - 77216781 GGGGCAAAGAATGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955523 14 - 80997621 GGGGCAAAGAATGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011765 14 + 10377808 GGGGCAAAGAATGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898882 14 - 8458610 GGGGCAAAGAATGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854620 14 + 75148670 GGGGCAAAGAATGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078065 14 + 4244037 GGGGCAAAGAATGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105914 14 + 4569836 GGGGCAAAGAATGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066950 14 - 159171411 GGGGCAAAGAATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789021 14 + 3513951 GGGGCAAAGAATGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837931 14 + 1920343 GGGGCAAAGAATGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952729 14 - 7032639 GGGGCAAAGAATGT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967016 14 + 8555354 GGGGCAAAGGATTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22762215 14 + 28711273 GGGTCACATGAAGT i otoGar3.GL873537 C 0 I 13157 s mm10.chr11 22044266 7 - 122082543 -------AGAATAT i mm10.chr11 C 0 I 4 s canFam3.chr9 21380092 13 + 61074082 GAGACAAAGAACT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359242 14 - 852752 GATGCTAAGGATTT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I a score=817408.000000 s hg38.chr17_GL383564v2_alt 54024 61 + 133151 CTGGGAA-GAATGT------GTACAGTGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAACT s panTro5.chr17 16247923 61 + 83181570 CTGGGAA-GAATGT------GTACAGTGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155408 61 + 83442489 CTGGGAA-GAATGT------GTACAGTGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990430 61 + 4267968 CTGAGAA-GAATGT------GTACAGTGGGATATT--GTAGGCACACAAATGGTGGCCATTTTTTCAACT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970830 61 - 2193130 CTGGGAA-GAATGT------GTACAGTGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042928 61 - 77216781 CTGGGAA-GAATGT------GTACAGTGGGATATT--GTAGGCACACAAATGGTGGCCATATTTTCAACT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955537 61 - 80997621 CTGGGAA-GAATGT------GTACAGTGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011779 61 + 10377808 CTGGGAA-GAATGT------GTACAGTGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898896 61 - 8458610 CTGAGAA-GAATGT------GTACAGTGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854634 61 + 75148670 CTGGGAA-GAATGT------ATACAGTGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078079 61 + 4244037 CTGGGAA-GAATGT------GTACAGTGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105928 61 + 4569836 CTGGGAA-AAACGT------GTACAGTGGGATATT--GTAGGCATACAAATGGTGGCCATATTTTCAACT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066964 61 - 159171411 TGGGGAG-GAATGT------GCATGGTGGGATACT--GTAGGCACACAAATGGTGGCCATATTTGCAACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789035 61 + 3513951 CGGGGAG-GAATGT------GCATGGTGGGATAGT--GTAGGCACACAAATGGTGGCCATATTTGCAACT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837945 61 + 1920343 TGGGGAG-GGATGT------GCATGGTGGGATATT--GTAGGCACACAAATGGTGGCCATATTTGCAACT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952743 61 - 7032639 CGGGCAG-GAATGT------GCATGGTGGGATATT--GTGGGCACACAAATGGTGGCCATATTTGCAACT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967030 61 + 8555354 CTGGGAA-GAATAT------ATATAGTGGGACATT--GTGGGCACACACATGGGGGCCATATTTtcaact i proCoq1.NW_012135969v1 C 0 I 284 s otoGar3.GL873537 22775386 61 + 28711273 CCGGGAA-GAATGT------ATATAGAGGGATATT--GTGGACACATGCACTGTGGCCACAATTTCAACT i otoGar3.GL873537 I 13157 C 0 s mm10.chr11 22044277 59 - 122082543 CTGGGACTGGATAT-----------GTGGTATGCTAAGGAGACACACTTACGATGGCCATATTTTAAATT i mm10.chr11 I 4 C 0 s canFam3.chr9 21380105 65 + 61074082 CTGGAAA-ACATGT--GGTGGGACTACAAGACATT--GTGGGCATATACAGGTGGTCCACATTTTCAACT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359256 67 - 852752 CTGGAAA-ACATTTGAGGTAGTACTACAAGACAGT--GTGGATACATACATGTGGGCCATATTTTCACTC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I a score=1874113.000000 s hg38.chr17_GL383564v2_alt 54085 166 + 133151 AGTCAGGCAACACACATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-GCCCCTATCTCAGGGGGCTAACAATGGAGGAGTGGTGGC------AGGAGCTGGCCAGTTGTAGGAATAACATTTGTGTAAGGCACAT--------------- s panTro5.chr17 16247984 165 + 83181570 AGTCAGGCAACACACATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAG---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-G-CCCTGTCTCAGGGGGCTAACAATGGAGGAGTGGTGGC------AGGAGCTGGCCAGTCGTAGGAATAACATTTGTGTAAGGCACAT--------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155469 165 + 83442489 AGTCAGGCAACACACATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAG---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-G-CCCTGTCTCAGGGGGCTAACAATGGAGGAGTGGTGGC------AGGAGCTGGCCAGTCGTAGGAATAACATTTGTGTAAGGCACAT--------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990491 165 + 4267968 AGTCAGGCAACACAGATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-GCCCCTGCCTCA-GGGGCTAACAATGGAAGAGTGGTGGT------AGGAGCTGGCCAGTCGTAGGAATAACATTTGTGTAAGGCACAT--------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970891 163 - 2193130 AGTCAGGCAACACACATTAACTGTGT----AGCGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGCCCCC------CCCTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCATAGGAATAACATTTGTGCAAGGCACAT--------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042989 166 - 77216781 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCTA---A---GGGAGGC---CAAAGGG-AAGAGAAG--A-GCCCCTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGGAAGGCACAT--------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955598 166 - 80997621 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGAGAAG--A-GCCCCTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGGAAGGCACAT--------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011840 166 + 10377808 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCTA---A---GGGAGGC---CAAAGGG-AAGAGAAG--A-GCCCCTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGGAAGGCACAT--------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898957 165 - 8458610 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATTTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAAG--A-GCCCC-GCCTCAGGGGGCTAACAATGGAGGAGTGGTGGG------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854695 166 + 75148670 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAAG--A-GCCCCTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078140 166 + 4244037 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATTTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAAG--A-GCCCCTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105989 166 + 4569836 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCGGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAAC--A-GCCCTTGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067025 166 - 159171411 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAAGC---CAAAGGT-AAGAGAAG--A-GCTCCTGCCTCAGGGGGCTAACAACAGAGGAGTGGTGGT------AGGACCTGGCCGGTCATAGGAATAGCATTTGTGTAAGGCACAT--------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789096 166 + 3513951 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGGTCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-GCCCCTGCCTCAGGGGGCTAACAACAGAGGAGTGGTGGT------AGGACCTGGCCAGTCATAGGAATAACATTTGTGTAAGGCACAT--------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838006 166 + 1920343 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-GCCCCTGCCTCGGGGGGCTAACAACAGAGGAGTGGTGGT------AGGGCCTGGCCAGTCATAGGAATAACATTTGTGTAAGGCACAT--------------- i cebCap1.NW_016107730v1 C 0 I 319 s aotNan1.NW_018502359v1 6952804 166 - 7032639 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGATCTGTGATAGCAAAGTAA---A---GGGAGGC---CAAAGGT-AAGGGAAC--A-GCCCCTGCCTCAGGGGGCTAACAACAGAGGAGTGGTGGC------AGGACCTGGCCAGTCATAGGAATAAAATTTGTGTAAGGCACAT--------------- i aotNan1.NW_018502359v1 C 0 I 338 s otoGar3.GL873537 22775447 170 + 28711273 TGCCAAACCACATTtattaattgagtgccaactatgtgctcagtcacctgtaataggtaagcaatcgt---ggatgga---caaaggtgaaagggac--a-gacGCTGCC-CAGGGGGCTAGCCATGGAGACATGGT---------AGGGGCTGGCCAGGCATAGCAGTAACTGTTAGGTGAGGCTGAT--------------- i otoGar3.GL873537 C 0 I 5 s mm10.chr11 22044336 165 - 122082543 ACTCAAACAGCAC--ATTGAAAGCCT----A---------CAGCAATTTGTGTCAGTTTAGTAA---A---TGTAGATGAACAAAGGTGAAGGGAAT--A-GTTTCTGTCTCTGAAAGCTACCAACAGAGAGGTGAGGGGTAGGTAGGGAGATTGCCAGTCACAGAGTTGCATGTTGGGTTAGGTGGAT--------------- i mm10.chr11 C 0 I 5 s canFam3.chr9 21380170 159 + 61074082 CACAAAACAACATGCAATTATAGAAG----AGTCCACG---AG------GTGACAGTTAAGcag---atattgaaggt---caaagatgaagggcat--acatccctgcctcagggagctaacgatggagaagTGGTGGT-------GGAGAGAGT--GTTATGACAATAATTTCTGGGTAAGGTGGAT--------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359323 159 - 852752 CACCAAGCAGCACATATTAATAGTCT----ATGATGTGCCCAGTGATCTGTGATAGTCACACCA---ATGTGGATGGC--ACAAAGGTGAAGGGAACCCA-GCCCCTGCCTT---------------------TGGTGTT------AGGG---AGATTGGTACAAAAATAAC-----TGTCAGGCACATCAAAGTGTATTATAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=10028.000000 s hg38.chr17_GL383564v2_alt 54251 1 + 133151 T s panTro5.chr17 16248149 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155634 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990656 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971054 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043155 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955764 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012006 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899122 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854861 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078306 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106155 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067191 1 - 159171411 C i calJac3.chr5 C 0 I 6 s saiBol1.JH378271 1789262 1 + 3513951 C i saiBol1.JH378271 C 0 I 6 s otoGar3.GL873537 22775622 1 + 28711273 T i otoGar3.GL873537 I 5 C 0 s mm10.chr11 22044506 1 - 122082543 T i mm10.chr11 I 5 C 0 s canFam3.chr9 21380329 1 + 61074082 T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359482 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6952970 338 - 7032639 I e cebCap1.NW_016107730v1 1838172 319 + 1920343 I a score=21120.000000 s hg38.chr17_GL383564v2_alt 54252 2 + 133151 AA s panTro5.chr17 16248150 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155635 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990657 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971055 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043156 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955765 2 - 80997621 AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012007 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899123 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854862 2 + 75148670 AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078307 2 + 4244037 AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106156 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067198 1 - 159171411 -A i calJac3.chr5 I 6 C 0 s saiBol1.JH378271 1789269 1 + 3513951 -A i saiBol1.JH378271 I 6 I 1 s cebCap1.NW_016107730v1 1838491 1 + 1920343 -a i cebCap1.NW_016107730v1 I 319 I 1 s otoGar3.GL873537 22775623 2 + 28711273 AA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044507 2 - 122082543 AA i mm10.chr11 C 0 C 0 s canFam3.chr9 21380330 1 + 61074082 -G i canFam3.chr9 C 0 I 5 s dasNov3.JH570468 359483 2 - 852752 AA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6952970 338 - 7032639 I a score=123588.000000 s hg38.chr17_GL383564v2_alt 54254 11 + 133151 GTTCCAGGAGA s panTro5.chr17 16248152 11 + 83181570 GTTCCAGGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155637 11 + 83442489 GTTCCAGGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990659 11 + 4267968 GTTCCAGGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971057 11 - 2193130 GTTCCAGGAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043158 11 - 77216781 GTTCCAGGAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955767 11 - 80997621 GTTCCAGGAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012009 11 + 10377808 GTTCCAGGAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899125 11 - 8458610 GTTCCAGGAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854864 11 + 75148670 GTTCCAGGAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078309 11 + 4244037 GTTCCAGGAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106158 11 + 4569836 GTTCCAGGAGA i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1789271 11 + 3513951 TTTCCAGGAAA i saiBol1.JH378271 I 1 I 323 s cebCap1.NW_016107730v1 1838493 11 + 1920343 GTTCCAGGAGA i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6953308 11 - 7032639 GTTCCAGGGGA i aotNan1.NW_018502359v1 I 338 C 0 s otoGar3.GL873537 22775625 11 + 28711273 GTTATACATGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044509 11 - 122082543 CTTCCTCTAGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21380336 11 + 61074082 GTTCCATGAAA i canFam3.chr9 I 5 C 0 s dasNov3.JH570468 359485 11 - 852752 CTTCCACAAGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e calJac3.chr5 46067199 0 - 159171411 C a score=378487.000000 s hg38.chr17_GL383564v2_alt 54265 37 + 133151 CCTCAAGAGTATGAGATAATA-TTTTT-GAAAAGCACAA s panTro5.chr17 16248163 37 + 83181570 CCTCAAGAGTATGAGATAATA-TTTTT-GAAAAGCACAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155648 37 + 83442489 CCTCAAGAGTATGAGATAATA-TTTTT-GAAAAGCACAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990670 37 + 4267968 CCTCAAGAGTATGAGATAATA-TTTTT-GAAAAGCACAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971068 37 - 2193130 CCTCAAGAGTATGAGATAATA-TTTTT-GAAAAGCACAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043169 37 - 77216781 CCTCAAGTGTATGAGATAATA-TATTT-GAAAAGGACAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955778 37 - 80997621 CCTCAAGTGTATGAGATAATA-TATTT-GAAAAGGACAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012020 37 + 10377808 CCTCAAGTGTATGAGATAATA-TATTT-GAAAAGGACAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899136 37 - 8458610 CCTCAAGTGTATCAGATAATA-TATTT-GAAAAGGACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854875 37 + 75148670 CTTCAAGTGTATGAGATAATA-TATTT-GAAAAGGACAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078320 37 + 4244037 CCTCAAGTGTATGAGATAATA-TATTT-GAAAAGCACAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106169 37 + 4569836 CCTCAAGTGTATGAGATAATA-TTTTT-GAAAAGGACAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067199 35 - 159171411 -GTTCAGGAT-TGTGTTAAGT-TCCCA-GGAAAGCAcca i calJac3.chr5 C 0 I 359 s saiBol1.JH378271 1789605 37 + 3513951 CCTTAAGAGCATGAGATAATA-TTTTT-GAAAAGGACAA i saiBol1.JH378271 I 323 C 0 s cebCap1.NW_016107730v1 1838504 37 + 1920343 GCCTAAGAGCATGAGATAATA-TTTTT-GAAAAGGACAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953319 37 - 7032639 GCCTAAGAGCATGAGATAATA-TTTTT-GAGAAGGACAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775636 37 + 28711273 GTTCAGGAGAATGAGATAATA-TTTTA-CAAAAGGAAAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044520 38 - 122082543 GCACAACCATACAAGACGATAGTTTTC-CAAAAGCACAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21380347 29 + 61074082 TCTAAGGAGC--------ATA-TTTTT-CAAAAGGACAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359496 38 - 852752 GCTTAAGAGGATAAGATAATA-TTTTTCAAAAAGGACAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=685628.000000 s hg38.chr17_GL383564v2_alt 54302 49 + 133151 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGT s panTro5.chr17 16248200 49 + 83181570 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155685 49 + 83442489 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990707 49 + 4267968 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971105 49 - 2193130 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043206 49 - 77216781 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955815 49 - 80997621 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012057 49 + 10377808 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899173 49 - 8458610 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854912 49 + 75148670 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078357 49 + 4244037 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106206 49 + 4569836 -------------TTTTTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067593 49 - 159171411 -------------TTTTTCCACCTGTGAACATGGCATTTTGG--GAAAGGGAGGAGGATTTGGT i calJac3.chr5 I 359 C 0 s saiBol1.JH378271 1789642 49 + 3513951 -------------TTTTTCCACCTGTGAACATGGCATTCTGG--GAAAGGAAGAAGGATTTGGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838541 49 + 1920343 -------------TTTTTCCACCTATGAACATAGCATTCTGG--GAAAGGGAGAAGGATTTGGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953356 49 - 7032639 -------------TTCTTCCACCTGTGAACATGGCATTCTGG--GAAAGGGAGAAGGATTTGGT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775673 50 + 28711273 --------------TTCCCCACCTCTGCACATGACATTCTGGGAGAGAGAGAGAAGGATTTGAT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044558 48 - 122082543 --------------TTGTCCAGTTCTGCACAAGGTATTGTGG--GTAAGGGAGAAGGGCTTGGT i mm10.chr11 C 0 I 19 s canFam3.chr9 21380376 48 + 61074082 --------------TTTTCCACCTTAGCACATGGTATTCTGG--GATGGGGAGAAGGATTTGAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359534 62 - 852752 TTTAAGAAGGCACATTTTCCACCTTTGCACATGGCATTCCAG--GAGAGAGAGAAAGACTTGGT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=73491.000000 s hg38.chr17_GL383564v2_alt 54351 6 + 133151 AGTAAT s panTro5.chr17 16248249 6 + 83181570 AGTAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155734 6 + 83442489 AGTAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990756 6 + 4267968 AGTAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971154 6 - 2193130 AGTAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043255 6 - 77216781 AGTAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955864 6 - 80997621 AGTAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012106 6 + 10377808 AGTAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899222 6 - 8458610 AGTAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854961 6 + 75148670 AGTAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078406 6 + 4244037 AGTAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106255 6 + 4569836 AGTAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067642 6 - 159171411 AATAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789691 6 + 3513951 AATAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838590 6 + 1920343 AATAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953405 6 - 7032639 AATAAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775723 6 + 28711273 AACAAC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380424 6 + 61074082 AACAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359596 6 - 852752 AACAAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=15300.000000 s hg38.chr17_GL383564v2_alt 54357 1 + 133151 C s panTro5.chr17 16248255 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155740 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990762 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971160 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043261 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955870 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012112 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899228 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854967 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078412 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106261 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067648 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789697 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838596 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953411 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775729 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 359602 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e canFam3.chr9 21380430 0 + 61074082 C a score=12376.000000 s hg38.chr17_GL383564v2_alt 54358 1 + 133151 A s panTro5.chr17 16248256 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155741 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990763 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971161 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043262 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955871 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012113 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899229 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854968 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078413 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106262 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067649 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789698 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838597 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953412 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 359603 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=171703.000000 s hg38.chr17_GL383564v2_alt 54359 17 + 133151 GAACTTGATTCTggctg s panTro5.chr17 16248257 17 + 83181570 GAACTTGGTTCTggctg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155742 17 + 83442489 GAACTTGGTTCTggctg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990764 17 + 4267968 GAACTTGATTCTggctg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971162 17 - 2193130 GAACTTGATTCTggctg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043263 17 - 77216781 GAACTTGATTCTggccg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955872 17 - 80997621 GAACTTGATTCTggccg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012114 17 + 10377808 GAACTTGATTCTggccg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899230 17 - 8458610 GAACTTGATTCTGGGTg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854969 17 + 75148670 GAACTTGATTCTGGGTg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078414 17 + 4244037 GAACTTGATTCTGGGTg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106263 17 + 4569836 GAACTTGATTCTggctg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067650 17 - 159171411 GAACTTGATTCTggccg i calJac3.chr5 C 0 T 433 s saiBol1.JH378271 1789699 17 + 3513951 GAACTTGATTCTggctg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838598 17 + 1920343 GAACTTGATTCTggcct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953413 17 - 7032639 GAACTTGATTCTggccg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=2356715.000000 s hg38.chr17_GL383564v2_alt 54376 264 + 133151 ggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaa-atacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaggctgaggcaggagaatcgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcgcaccactgcactccagcc s panTro5.chr17 16248274 264 + 83181570 ggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaa-atacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaagctgaggcaggagaattgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcacaccactgcactccagcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155759 263 + 83442489 ggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaa-atac-aaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaagctgaggcaggagaattgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcacaccactgcactccagcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990781 264 + 4267968 ggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaa-atacaaaaaattagccaggcatggtgacgcatgcctatgatcctaactacttgggaggctgaggcaggagaatcgcttaaaactgggaggtgtagtgagccttggctcccacttgcagtgagccaagatcgcaccactgcactccagcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971179 264 - 2193130 ggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggattgcttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatccctaccaaaa-acacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaggctgaggcaggagaattgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcgcaccactgcactccagcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043280 268 - 77216781 ggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaa-atacaaaacattagctaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccccttgcagtgagccaagatcgcgccactgcactccagct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955889 268 - 80997621 ggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaa-atgcaaaacattagccaggcatggtgacgcatacctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccccttgcagtgagccaagatcacgccactgcactccagct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012131 268 + 10377808 ggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaa-atacaaaacattagccaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccccttgcagtgagccaagatcgcgccactgcactccagct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899247 268 - 8458610 ggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtagattgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaa-atacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgtggcaagagaatcacttgacactggaaggtgaagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854986 268 + 75148670 ggtgcaatggctcatgcctgtaatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagactatcctggccaacatggtgaaaccccatctctatcaaaa-atacaaaaaattagccaggcatggtgatgcatgcctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078431 268 + 4244037 ggtgcaatggctcatgcctataatcccagcactttgggaggttgaagcaggtggattgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaa-atacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgtggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106280 268 + 4569836 ggtgcaatggctcatgcctataatcccagcaatttgggaggttgaggcaggtggaccgcttgaggtcaggagttcaagaccattctggccaacatggtgaaaccccatctctatcaaaa-atacaaaaaattagccaggcatggtgatgcatgcctgtgatcctaactacttgggaggctgagacaagagaattgcttgacactgggaggcgtagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067234 252 - 159171411 ggcacagtggctcacgcatgtaatcctagcactttgggtgaccgaggtgggtggattgcctgagctcagaagtttgagaccagcctgggcaacacagtgaaaccctgtctctactaaaatacaaaaacatttggctgagcatggcaatgtgtgcct-taatcccagctacttgggagactcaggcagaagaatcggttgaatgtgggaggcagagg----------------ttgcggtgagccaagagctcgccattgcactccagcc i calJac3.chr5 T 433 C 0 s saiBol1.JH378271 1789716 252 + 3513951 ggtccattggctcatgcctgtaataccagcactttgggaggctgacacgagtggattgcttgaggtcaggagttcaagcccagcctggccaacatggtgaaaccccatctctaccaaaa-atacaaaaaattatccaggtgttgtggtacatgcctgtaatgctagctacttgggaggctgaggcaggagaattgcctgaaccctggaggtggagg----------------ctgcagtgagctgagattactccactgcactccagcc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838615 252 + 1920343 ggtacattggctcatgcctgtaatcccagaactttgggaggctgacgcgagtggattgcttgaggtcaggagttcaagcccagcctggccaatatggtgaaaccccatctctaccaaaa-atacaaaaaattatccaggtgctgtggtacatgcctgtaatgctagctacttgggaggctgaggcaggagaattgcctgaaccttggaggtagagg----------------ttgcagtgagctgagatcactccactgcactccagac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953430 239 - 7032639 ggtacagtggctcatgcctgtaatcccagcactttgggaggctgacgcaagtggattgcttgaggtcag-------------gcctagccaacatggtgaaaccccatctctaccaaaa-atacaaaaaattttccaggtgttgtggtacatgcctgtaatgctagctacttgggaggctgaggcaggagaattacctgaaccttggaggtggagg----------------ttgcagtgagctgagatcactccactgcactccagcc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=6718.000000 s hg38.chr17_GL383564v2_alt 54640 3 + 133151 tag s panTro5.chr17 16248538 3 + 83181570 tag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156022 3 + 83442489 tag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991045 3 + 4267968 tag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971443 3 - 2193130 tag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46067486 3 - 159171411 tgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789968 3 + 3513951 tga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838867 3 + 1920343 tgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953669 3 - 7032639 tgg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C e macNem1.NW_012014910v1 2012399 0 + 10377808 C e colAng1.NW_012122154v1 2106548 0 + 4569836 C e manLeu1.NW_012106252v1 2078699 0 + 4244037 C e chlSab2.chr16 64855254 0 + 75148670 C e cerAty1.NW_012006043v1 1899515 0 - 8458610 C e rheMac8.chr16 30043548 0 - 77216781 C e macFas5.chr16 27956157 0 - 80997621 C a score=374990.000000 s hg38.chr17_GL383564v2_alt 54643 48 + 133151 gcaacagagcaagaccctgtctcaaaaacaaaacaaaacaaaacaaaa s panTro5.chr17 16248541 48 + 83181570 gcaacagagcaagaccctgtctcaaaaacaaaacaaaacaaaacaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156025 48 + 83442489 gcaacagagcaagaccctgtctcaaaaacaaaacaaaacaaaacaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991048 38 + 4267968 gcaacagagcaagaccctgtctca----------aaaacaaaacaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971446 43 - 2193130 gcagcagagtaagaccctgtctca-----aaaacaaaacaaagcaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043548 43 - 77216781 gtctcagagcaagaccctgtctca-----aaaacaaaacaaaacaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956157 43 - 80997621 gtctcagagcaagaccctgtctca-----aaaacaaaacaaaacaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012399 43 + 10377808 gtctcagagcaagaccctgtctca-----aaaacaaaacaaaacaaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899515 43 - 8458610 gtctcagagcaagaccctgtctca-----aaaacaaaacaaaacaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855254 48 + 75148670 gtctcagagcaagaccctgtctcaaaaacaaaacaaaacaaaacaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078699 43 + 4244037 gtctcagagcaagaccctgtctca-----aaaacaaaacaaaacaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106548 48 + 4569836 gtctcagagcaagaccctatctcaaaaacaaaacaaaacaaaacaaaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067489 43 - 159171411 gtgacagagcgagactccatctca-----aaaaacaaacaaaaaacca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789971 43 + 3513951 gcaacagagcaagaccctgtctca-----aaaacaaaacaaaagaaaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838870 43 + 1920343 gcaacagagtaagaccctgtctca-----aaaacaaaacaaaacaaaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953672 43 - 7032639 gcaacagagcaagaccctgtctca-----aaaactaaacaaaacaaaa i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=13923.000000 s hg38.chr17_GL383564v2_alt 54691 1 + 133151 a s panTro5.chr17 16248589 1 + 83181570 a i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156073 1 + 83442489 a i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991086 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971489 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043591 1 - 77216781 a i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956200 1 - 80997621 a i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012442 1 + 10377808 a i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899558 1 - 8458610 a i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855302 1 + 75148670 a i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078742 1 + 4244037 a i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106596 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067532 1 - 159171411 a i calJac3.chr5 C 0 I 466 s saiBol1.JH378271 1790014 1 + 3513951 a i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838913 1 + 1920343 a i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953715 1 - 7032639 a i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775730 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380430 1 + 61074082 A i canFam3.chr9 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C a score=11099.000000 s hg38.chr17_GL383564v2_alt 54692 1 + 133151 g s panTro5.chr17 16248590 1 + 83181570 g i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156074 1 + 83442489 g i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991087 1 + 4267968 g i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971490 1 - 2193130 g i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043592 1 - 77216781 g i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956201 1 - 80997621 g i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012443 1 + 10377808 g i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899559 1 - 8458610 g i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855303 1 + 75148670 g i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078743 1 + 4244037 g i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106597 1 + 4569836 g i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067999 1 - 159171411 G i calJac3.chr5 I 466 C 0 s saiBol1.JH378271 1790015 1 + 3513951 g i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838914 1 + 1920343 g i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953716 1 - 7032639 g i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775731 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380431 1 + 61074082 A i canFam3.chr9 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C a score=86277.000000 s hg38.chr17_GL383564v2_alt 54693 6 + 133151 aaCTTG s panTro5.chr17 16248591 6 + 83181570 aaCTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156075 6 + 83442489 aaCTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991088 6 + 4267968 aaCTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971491 6 - 2193130 aaCTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043593 6 - 77216781 aaCTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956202 6 - 80997621 aaCTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012444 6 + 10377808 aaCTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899560 6 - 8458610 aaCTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855304 6 + 75148670 aaCTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078744 6 + 4244037 aaCTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106598 6 + 4569836 aaCTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068000 6 - 159171411 AACTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790016 6 + 3513951 aaCTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838915 6 + 1920343 aaCTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953717 6 - 7032639 aaCTTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775732 6 + 28711273 TATTTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380432 6 + 61074082 AATTTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359604 6 - 852752 AATTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=115577.000000 s hg38.chr17_GL383564v2_alt 54699 7 + 133151 ATTCCAA s panTro5.chr17 16248597 7 + 83181570 ATTCCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156081 7 + 83442489 ATTCCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991094 7 + 4267968 ATTCCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971497 7 - 2193130 ATTCCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043599 7 - 77216781 ATTCCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956208 7 - 80997621 ATTCCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012450 7 + 10377808 ATTCCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899566 7 - 8458610 ATTCCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855310 7 + 75148670 ATTCCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078750 7 + 4244037 ATTCCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106604 7 + 4569836 ATTCCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068006 7 - 159171411 ATTCCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790022 7 + 3513951 ATTCCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838921 7 + 1920343 ATTCCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953723 7 - 7032639 ATTCCAA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967375 7 + 8555354 ATTCCAA i proCoq1.NW_012135969v1 I 284 C 0 s otoGar3.GL873537 22775738 7 + 28711273 ATCTCAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380438 7 + 61074082 ATTCCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359610 7 - 852752 AATCCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044606 19 - 122082543 I e micMur3.chr16 35880237 481 - 65901067 I a score=824264.000000 s hg38.chr17_GL383564v2_alt 54706 59 + 133151 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTATTGTGTGCA s panTro5.chr17 16248604 59 + 83181570 CTAACTCCAGCCACTGAGAATTCACAGGTTGTGTCATTAAGCCCAAGGTATTATGTGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156088 59 + 83442489 CTAACTCCAGCCACTGAGAATTCACAGGTTGTGTCATTAAGCCCAAGGTATTATGTGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991101 58 + 4267968 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAA-GTATTATGTGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971504 59 - 2193130 CAAACTCCAGCCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTATTATGTGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043606 59 - 77216781 CTAACTCCAACCACTGAGAATTCATACGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956215 59 - 80997621 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012457 59 + 10377808 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899573 59 - 8458610 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855317 59 + 75148670 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078757 59 + 4244037 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106611 59 + 4569836 CTAACTTCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068013 59 - 159171411 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTTGTTAAGCCCAAGGTATTCTGTGCA i calJac3.chr5 C 0 I 5 s saiBol1.JH378271 1790029 59 + 3513951 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCGTTAAGCCCAAGGTATTCTGTGCA i saiBol1.JH378271 C 0 I 5 s cebCap1.NW_016107730v1 1838928 59 + 1920343 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCGTTAAGCCCAAGGTATTCTGTGCA i cebCap1.NW_016107730v1 C 0 I 22 s aotNan1.NW_018502359v1 6953730 59 - 7032639 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCGTTAAGCCCAAGGTATTCTGTGCA i aotNan1.NW_018502359v1 C 0 I 22 s proCoq1.NW_012135969v1 2967382 59 + 8555354 CTAACTCCAACCACTGGGAATTCATAGGTTGTCTCATTAAGCACAAGGAACTCTGTGCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775745 58 + 28711273 CTAACTCTACCCAGTAAGAATTCATAGGATGTCTCATTAAGCATAAGGTCCTAT-TGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044625 59 - 122082543 CTAATTCCAACCCCTGATAATTCATAGGTTGCTCCTGTAAGTACAAGTTACCGTGTGTG i mm10.chr11 I 19 I 13 s canFam3.chr9 21380445 51 + 61074082 CTATCACGAACCACTGAAAATTCATGGGTGG--------AATTCATAGGGCTCTCTCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359617 57 - 852752 CTAACTCCAACTGCTGAGAAATCATAGGTTGTTTC--TAGGTCCACAGGCCTCCCTCCT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I a score=7111.000000 s hg38.chr17_GL383564v2_alt 54765 1 + 133151 T s panTro5.chr17 16248663 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156147 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991159 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971563 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043665 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956274 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012516 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899632 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855376 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078816 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106670 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068077 1 - 159171411 T i calJac3.chr5 I 5 C 0 s saiBol1.JH378271 1790093 1 + 3513951 T i saiBol1.JH378271 I 5 C 0 s proCoq1.NW_012135969v1 2967441 1 + 8555354 C i proCoq1.NW_012135969v1 C 0 I 16 s otoGar3.GL873537 22775803 1 + 28711273 C i otoGar3.GL873537 C 0 I 8 s mm10.chr11 22044697 1 - 122082543 T i mm10.chr11 I 13 C 0 s canFam3.chr9 21380496 1 + 61074082 C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359674 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6953789 22 - 7032639 I e cebCap1.NW_016107730v1 1838987 22 + 1920343 I a score=23343.000000 s hg38.chr17_GL383564v2_alt 54766 6 + 133151 TAAAAC s panTro5.chr17 16248664 6 + 83181570 TAAAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156148 6 + 83442489 TAAAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991160 6 + 4267968 TAAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971564 6 - 2193130 TAAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043666 6 - 77216781 TAAAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956275 6 - 80997621 TAAAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012517 6 + 10377808 TAAAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899633 6 - 8458610 TAAAAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855377 6 + 75148670 TAAAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078817 6 + 4244037 TAAAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106671 6 + 4569836 TAAAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068078 6 - 159171411 TAGGGC i calJac3.chr5 C 0 I 10 s saiBol1.JH378271 1790094 6 + 3513951 TAGGGC i saiBol1.JH378271 C 0 I 10 s otoGar3.GL873537 22775812 6 + 28711273 TCTGTC i otoGar3.GL873537 I 8 C 0 s mm10.chr11 22044698 4 - 122082543 --TGAC i mm10.chr11 C 0 I 2 s canFam3.chr9 21380497 2 + 61074082 ---AA- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359675 2 - 852752 TC---- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967442 16 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6953789 22 - 7032639 I e cebCap1.NW_016107730v1 1838987 22 + 1920343 I a score=32148.000000 s hg38.chr17_GL383564v2_alt 54772 3 + 133151 CTC s panTro5.chr17 16248670 3 + 83181570 CTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156154 3 + 83442489 CTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991166 3 + 4267968 CTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971570 3 - 2193130 CTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043672 3 - 77216781 TTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956281 3 - 80997621 TTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012523 3 + 10377808 TTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899639 3 - 8458610 TTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855383 3 + 75148670 TTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078823 3 + 4244037 TTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106677 3 + 4569836 CTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068094 3 - 159171411 CTC i calJac3.chr5 I 10 C 0 s saiBol1.JH378271 1790110 3 + 3513951 CTC i saiBol1.JH378271 I 10 C 0 s cebCap1.NW_016107730v1 1839009 3 + 1920343 CTC i cebCap1.NW_016107730v1 I 22 C 0 s aotNan1.NW_018502359v1 6953811 3 - 7032639 CTC i aotNan1.NW_018502359v1 I 22 C 0 s otoGar3.GL873537 22775818 3 + 28711273 CAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044704 3 - 122082543 CTC i mm10.chr11 I 2 C 0 s canFam3.chr9 21380499 2 + 61074082 -CC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359677 3 - 852752 CTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967442 16 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=439898.000000 s hg38.chr17_GL383564v2_alt 54775 34 + 133151 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTCCT s panTro5.chr17 16248673 34 + 83181570 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156157 34 + 83442489 CTCCTAAAGCTATTCTAAACCTCCTTGTCCTCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991169 34 + 4267968 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971573 34 - 2193130 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043675 34 - 77216781 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956284 34 - 80997621 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012526 34 + 10377808 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899642 34 - 8458610 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855386 34 + 75148670 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078826 34 + 4244037 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106680 34 + 4569836 CTCCTAAAGCCATTCTAAACCTCCTTGTCCTTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068097 34 - 159171411 CTCCCCTATCCATTGTAAACCTCCTTGTCCTCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790113 34 + 3513951 CTCCCCTACCCACTCTAAACCTCCTTGTCCTCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839012 34 + 1920343 CTTCCCTATCCACTCTAAACCTCCTTGTCCTCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953814 34 - 7032639 CTCCCCTATCCATTCTAAACCTCCTTGTCCTCCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967458 33 + 8555354 CTCCCCAATCCATGCTAATCCTCCCTGTCCCCC- i proCoq1.NW_012135969v1 I 16 C 0 s otoGar3.GL873537 22775821 32 + 28711273 -CCTGCAACACCTTCTCATCCTTGCTGTCCCCC- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044707 34 - 122082543 CTCTCCAACCCATTGTTAACCTTTGTGTCTCCCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21380501 34 + 61074082 ATCCTCAATCCATTCTAAATCTCTGTGTCCTCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359680 33 - 852752 -TCCCTAGTGCACTGTAAACCTCTGTGTCATCCC i dasNov3.JH570468 C 0 I 8 e micMur3.chr16 35880237 481 - 65901067 I a score=1356543.000000 s hg38.chr17_GL383564v2_alt 54809 67 + 133151 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT s panTro5.chr17 16248707 67 + 83181570 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156191 67 + 83442489 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991203 67 + 4267968 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971607 67 - 2193130 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTTCTGTGGACCCTGTGGCACCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043709 67 - 77216781 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956318 67 - 80997621 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012560 67 + 10377808 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899676 67 - 8458610 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855420 67 + 75148670 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078860 67 + 4244037 AGGCTCCCCTGCAACCCATGCGCCACCACCAGTGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106714 67 + 4569836 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068131 67 - 159171411 AGGCTCCCCTGCAACCCATGTGTGACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCACCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790147 67 + 3513951 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCACCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839046 67 + 1920343 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCACCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953848 67 - 7032639 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCACCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880718 67 - 65901067 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCCAGTGGCAACCCCTGTGGACCCTGCGGCTGCT i micMur3.chr16 I 481 C 0 s proCoq1.NW_012135969v1 2967491 67 + 8555354 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCCGGTGGCAACTCCTGTGGACCCTGTGGCTGCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775853 67 + 28711273 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044741 67 - 122082543 AGCCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAGTTGCTGTGGACCTTGCGGCAGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21380535 67 + 61074082 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTTGCGGCAATTCCTGTGGGTCCTGTGGCAACT i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 359721 67 - 852752 AGGCTCCCCTGCAACCCATGTGCCACCACCAACGCATGTGGCAACTCCTGTGGACCCCGTGGCTGCT i dasNov3.JH570468 I 8 C 0 a score=21000.000000 s hg38.chr17_GL383564v2_alt 54876 1 + 133151 C s panTro5.chr17 16248774 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156258 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991270 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971674 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043776 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956385 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012627 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899743 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855487 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078927 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106781 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068198 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790214 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839113 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953915 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880785 1 - 65901067 C i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967558 1 + 8555354 C i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775920 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044808 1 - 122082543 C i mm10.chr11 C 0 C 0 s dasNov3.JH570468 359788 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21380602 1 + 61074082 I a score=2241312.000000 s hg38.chr17_GL383564v2_alt 54877 137 + 133151 TCAAAAGGGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC s panTro5.chr17 16248775 137 + 83181570 TCAAAAGGGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCCAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156259 137 + 83442489 TCAAAAGGGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCCAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991271 137 + 4267968 TCAAAAGGGTTGCTG-CAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971675 136 - 2193130 TC-AAAGGGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATGTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCAAGTCCTGACTTCTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043777 137 - 77216781 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956386 137 - 80997621 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012628 137 + 10377808 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899744 137 - 8458610 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855488 137 + 75148670 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTCTC-TAGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078928 137 + 4244037 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106782 137 + 4569836 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAGACCTCATGTTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068199 137 - 159171411 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACGAAGCCATTTAGATCAAGCACAGGAAAGATC---CTCAAGTCCTGCCTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790215 137 + 3513951 TCAAAAGTGTTGCTG-TAATTGAAAAGCCTGTATCCTCTTTGAAGACATCTGCAAAGCCATTTAGATCAAGCACAGGAAATATC---CTCAAGTCCTGCCTTTTC-TGGAGGTCAGCTGACATCAAGAAACCTCATCTTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839114 137 + 1920343 TCAAAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAAGCACAGGAAAGATC---CTCAAGTCCTGCCTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953916 137 - 7032639 TCAGAAGTGTTGCTG-TAATTGAAAAGCTTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAAGCACAGGAAAGATC---CTCAAGTCCTGCCTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880786 137 - 65901067 TCAAAAGTGTGGCTG-TAATTGAAAACCTTATATCCTCTTTGAAGACATCAACAAAACCATTTAGATCAAGCACAGGAAAAGTC---CTCAGGTTCTGCCTTTGC-TGGGGCCCAGCTGACATCAAGAAACCACGTCATGCC i micMur3.chr16 C 0 I 42 s proCoq1.NW_012135969v1 2967559 136 + 8555354 TCAAAAGTGTGGCTG-TAATTGAAAACCTTGTATCCTCTTTGAAGACGTCAACAAAGCCATTTAGATCAAGCACAGGGAAA-TC---CTCAGGTTCTGCCTTTGC-TGGAGCCCAGCTGACATCAACAAACCGCGTCGTGCC i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22775921 136 + 28711273 TCAAAAGTGTTGCTG-TAATTGAACACCTTGTATTCTCCCTGAAGACATCAACAAAGCCATTTAGGTGAAGCACAGGAAAAATC---CTCAGGTCCGGCCTTTGC-TAGAGCTCCGCTGACATCAAGACACCAC-TCATGCC i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22044809 135 - 122082543 ---AAAGCGTTGCTGTTAACTGAA----CTGATTCCCTTTTGAAGATGTCGATGAAGTCATTTAGTTCAAATGCAGGAACGGTCAAACCCAGGCCCCTCCTTTGCAAGGATTTCCGTTGTCACTAAGAAACGTCATCGTGAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21380603 137 + 61074082 TCAAACACGTTGCTCTTAAATTAAGAACTTGCATCCTCTTTGAAGACGACAATGAAGCCATTCAGATCAAGCACAGGAAAGGTC---CTTGGGTATTGCCTTTGC-TGGAGCTCAGCTGTCAATTAGAAACCTAGACATGC- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 359789 131 - 852752 TCAACAACGTTGCTGTTAATTTAGAAGCTTGAAACCTCTCTGAAGATGTTAATGAAGCCACTTAGATCAAGTGTAGGAGAGGCC---CCCAGATCCTGCCTTTGC-CAGAGCT-------CATTTAGAAACCTTGTCATGCC i dasNov3.JH570468 C 0 C 0 a score=445296.000000 s hg38.chr17_GL383564v2_alt 55014 39 + 133151 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCTGACC s panTro5.chr17 16248912 39 + 83181570 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCTGACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156396 39 + 83442489 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCTGACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991408 39 + 4267968 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCAACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971811 39 - 2193130 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTACCCAACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043914 40 - 77216781 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956523 40 - 80997621 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012765 40 + 10377808 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899881 40 - 8458610 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855625 40 + 75148670 TACTATATTATTTCTAGAGTGCTGAAAAGCTTTCCCCACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079065 40 + 4244037 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106919 40 + 4569836 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068336 40 - 159171411 TACTGTGTTATTTCCAGAATGCTGAAAAGCTTTCCCAACC i calJac3.chr5 C 0 I 3 s saiBol1.JH378271 1790352 40 + 3513951 TACTGTGTTATTTCCAGAATGCTGAAAAGCTTTCCCAACC i saiBol1.JH378271 C 0 I 3 s cebCap1.NW_016107730v1 1839251 40 + 1920343 TACTCTGTTATTTCCAGAATGCTGAAAAGCTTTCCCAACC i cebCap1.NW_016107730v1 C 0 I 3 s aotNan1.NW_018502359v1 6954053 40 - 7032639 TACTGTGTTATTTCCAGAATGCTGAAAAGCTTTCTCAACC i aotNan1.NW_018502359v1 C 0 I 3 s proCoq1.NW_012135969v1 2967696 38 + 8555354 -ACTGTGATACTTCTAGA-CACTGAAATGCCTTCCTGGTC i proCoq1.NW_012135969v1 I 1 I 3 s otoGar3.GL873537 22776058 38 + 28711273 -ATGGTGGCATTCCTAGA-CTCTGAAATGCCTTTCAGGCT i otoGar3.GL873537 I 1 I 3 s mm10.chr11 22044944 37 - 122082543 --AACTGTGATTTTTAGA-TGAGGATGAGCTTTCCTGAAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21380740 37 + 61074082 --CAAATATATTTCTAGA-CATGGAAATTCTTTCCAGATT i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 359920 38 - 852752 -AAGTGGATGTTTCTAGG-CACTGAAATGTGTTCCAGACC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880923 42 - 65901067 I a score=60271.000000 s hg38.chr17_GL383564v2_alt 55053 3 + 133151 CAA s panTro5.chr17 16248951 3 + 83181570 CAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156435 3 + 83442489 CAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991447 3 + 4267968 CAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971850 3 - 2193130 CAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043954 3 - 77216781 CAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956563 3 - 80997621 CAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012805 3 + 10377808 CAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899921 3 - 8458610 CAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855665 3 + 75148670 CAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079105 3 + 4244037 CAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106959 3 + 4569836 CAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068379 3 - 159171411 CAA i calJac3.chr5 I 3 C 0 s saiBol1.JH378271 1790395 3 + 3513951 CAA i saiBol1.JH378271 I 3 C 0 s cebCap1.NW_016107730v1 1839294 3 + 1920343 CAA i cebCap1.NW_016107730v1 I 3 C 0 s aotNan1.NW_018502359v1 6954096 3 - 7032639 CAA i aotNan1.NW_018502359v1 I 3 C 0 s micMur3.chr16 35880965 3 - 65901067 CAA i micMur3.chr16 I 42 C 0 s proCoq1.NW_012135969v1 2967737 3 + 8555354 CAA i proCoq1.NW_012135969v1 I 3 C 0 s otoGar3.GL873537 22776099 3 + 28711273 CAG i otoGar3.GL873537 I 3 C 0 s mm10.chr11 22044981 3 - 122082543 CAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21380780 3 + 61074082 CAA i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 359958 3 - 852752 CAA i dasNov3.JH570468 C 0 I 2 a score=311146.000000 s hg38.chr17_GL383564v2_alt 55056 17 + 133151 GCAAAGACACACATCAT s panTro5.chr17 16248954 17 + 83181570 GCAAAGACACACATCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156438 17 + 83442489 GCAAAGACACACATCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991450 17 + 4267968 GCAAAGACACACAACAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971853 17 - 2193130 GCAAAGACACATATCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043957 17 - 77216781 GCAAAGACACACATCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956566 17 - 80997621 GCAAAGACACACATCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012808 17 + 10377808 GCAAAGACACACATCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899924 17 - 8458610 GCAAAGACACACATCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855668 17 + 75148670 GCAAAGACACACATCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079108 17 + 4244037 GCAAAGACACACATCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106962 17 + 4569836 GCAAAGACACACATCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068382 17 - 159171411 GCAAAGACACACATCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790398 17 + 3513951 GCAAAGACACACATCAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839297 17 + 1920343 GCAAAGACACACATCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954099 17 - 7032639 GCAAAGACACACATCAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880968 17 - 65901067 GCAAAGACACATATCAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967740 17 + 8555354 GCAAAGACACATATCAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776102 17 + 28711273 GCAAAGACACATATCAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380783 17 + 61074082 GAAAAGACACACATCAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359963 17 - 852752 AGAAAGACACACATTAT i dasNov3.JH570468 I 2 C 0 e mm10.chr11 22044984 0 - 122082543 C a score=6719377.000000 s hg38.chr17_GL383564v2_alt 55073 414 + 133151 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTGTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC--TTAAGGTGTTTCCTGAACGTACTA-CTGCATTTCCTGTTTTCCTTTTTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG s panTro5.chr17 16248971 414 + 83181570 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC--TTAGGGTGTTTCCTGAACATACTA-CTGCATTTCCTGTTTTCCTTTTTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGAGTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156455 414 + 83442489 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC--TTAGGGTGTTTCCTGAACATACTA-CTGCATTTCCTGTTTTCCTTTTTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991467 415 + 4267968 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACGTACTA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCGTAGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971870 415 - 2193130 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCTTCTTTGTTTCTAAAGATGCTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACGTACTA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAGGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCGTAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-cctgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043974 412 - 77216781 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAGATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATTCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956583 412 - 80997621 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACT---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAGATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATTCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012825 412 + 10377808 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAGATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATTCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899941 412 - 8458610 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGGCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855685 412 + 75148670 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGACTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079125 412 + 4244037 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106979 412 + 4569836 CAACTTCCAATGTCTGGATGACTCCTTCCTATTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAATG---TA-CTGCATTTCCTGCTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCATT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068399 415 - 159171411 CAGCTTCCAATGTCTGGACAACTCCTTCCTGTTGAAGGTCGAGACTCTTTGTTTCTAAAGATCTGCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCTAGAACG---TA-TTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATACAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCGTATTCATACATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGCCAAGCCTTTATGCTTTCACCAGAAACACTGATGTAGACAGGGAATGATGTCCTT----CTGGGAGACTCCCACCAAGGGCAAGGCCATGCAAG-----GAAACCTGG i calJac3.chr5 C 0 I 724 s saiBol1.JH378271 1790415 407 + 3513951 CAGCTTCCAATGTCTGGACAACTCCTTCCTGTTGAAGGTCGAGACTCTTTGTTTCTAAAGATCTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCAGAACG---TG-TTGCATTTCCTGTTTTCCTTTATTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGGCAAGCCTTTATGC-TTCACCAGAAACACTGATATAGACAGGGAAGGATGTC-------CTGGGAGACTCCCATCAAGGGC-AGGCCATGCAGG-----AAA---CGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839314 411 + 1920343 CAGCTTCCAATGTCTGGACAACTTCTTCCTGTTGAAAGTCGAGACTCTTTGTTTCTAAGGATGTTCGGCTCCCTGTAATCTGAGCTCC----AGTTACTA--TTTAGGGTGTTTCCAGAACG---TG-TTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCACTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGATGTCCTT----CTGGGAGACTCCCACCAAGGGC-AGGCCATGCAGG-----AAA-CCTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954116 412 - 7032639 CAGCTTCCAATGTCTGGACAGCTCCTTCCTGTTGAAGGTCGAGACTCTTTGTTTCTAAAGATCTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCAGAATG---TA-TTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATATCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGATGTCCTT----CTGGGAGACTCCCACCAAGGGC-AGGCCATGCAGG-----AAA-CCTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880985 413 - 65901067 CAACTTCCAATGTCTGGAACATGCCTTCGGGTTGAGAGTTGAGCCTCTTTG----TGAAAATGTTCAGCTCGCTGTCATCTGAGCTCC----AGTTATTAG-TTTAGGGTGTTTCCTGTACC---TA-CTGCATTTCCTGCTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGTTACTTCATTTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGTGCTTCTCATCCATATTCATGCATTGTAAATTACTCATGATGGCTGTTTCAAAAAAATACCC--CTTCATTAGGAGGATAAAATGGATTGAATGACTGTGCTCAGCCATTAGGC-ACCACCAGAAACACTGATGAAG--AGGGAGCGATGCCCTC----TTGAGAGGCTCCCACCAAGGGT-GGGCCACTCAGAAAACCAAA-CCTGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967757 398 + 8555354 CAACTTCCAATGTCTGGAAAATTCCTTCGGGTTGAGAGTTGAGCCTCTTTGTTTCTGAAAATGTTCAGCTCTCTGTTGTCTGAGCTCC----AGTTATTAG-TTTAGAGTGTTTCCTGTACC---TG-CTGCATTTCCTGCTTTCCTTTCTTCTTTGGTATTCTCTGGAATGCAAGGAGGTTACTTCATTTACCTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGTGCTTCTCATCCATATTCATGCATTGTAAATTACTCATGATGGCTGTTTCATAAAAATGCCC--CTTCATTAGGAGGATAAAATGGATTGAATGACTGTGCTCAGCCATTAGGC-ACCACCAGAAACACTGACGAAG--AGGGCG------------------GATGCTCCCACCAAGGGC-GGGCCATGCAGA-----AAA-CCTGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776119 405 + 28711273 CAACTTCCAGTGTCTGGAAAA---CTTTGCATTAAGGGTTGAGCTTTTTTT---CTGAGGATGTTCAGCTCCTTGTAATCTAAGCTCT----GGTTATTGG-TTTAGGATGTTTCCTTAACA---TA-TTGTATCTCCTGTTTTCCTTTCTTCTTTGGTATTCTCTGGAGTGCAAGGAAGTTACTTCATTTA-TTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGTGCTTCTCATCCATACTTATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATAGTC--TTTCATTAGGAGGATAAAATGGATTGAATGATGGTGCTCAACTATTATGC-ACCACCAGGAACACTGATGAGG--AAGGAGGGATGCCCTC----TCATGAGGCTCCCCCCAAGGGT-GGGCCATGCACA-----ACA-CCCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044984 409 - 122082543 CAACTTCC--TGTC----CAACTCCTTCA-GTTGAAGGTTGAGTGTCTTTTCTGCTCAGG--TGTCACATGTCTGCCAACGGAACTCCGTGAGATTGGCA--TAGAGGGCGGTTCCTGTACA---TGCCTCCATTTCCTGCCTTCCTTTCTTCTTGGTGATTCTCTGGAATGCAAGGAGGCAGCTTCATCCACCTCCCAATAAACTTTATTTCTCTGGCATAGTAAAGGTGT--TTCTCATTCATATTCATACTTTGTAAAATATTCA---TGACTGTCCCATAAAAATACCTGGAACTAGCAGGGTGATTAAATGGATCAAATGGCTGA-CCTAGCTATTAAGC-TCAAAGGGAAACCTTGAGG--GGCAGGGAGAGGTGTTCTCTGTATGGGTGGACTCTCAGAAAGGGC-GGGCCATGTAGA-----AAA-ACTTG i mm10.chr11 C 0 I 1 s canFam3.chr9 21380800 408 + 61074082 CAACTTCTAATGTCTGGAAAATCCCTTCCTGTTGAAGTGTGAGTGTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCCAAGCTCC----AGGGTCTACTTTTAGGGCATTTCCTGTATG---TA-TTGTGTTTTCTGCTTTTCTAGCTTCTTTGGTATTCTCTGGAATACAAGGAAGCTACTTCATATACTTCCCAATAAACTTTATTTCTCTGGCATAGCAAATTTGT--TTCTCATTTATATTTATGCACTGTAAAGTATCTACCGTGGCTGTTTCCTAAAAATACCC--CTTTGTTAGGAGGA---AATGGGTTAAATGATTGACACCAGCCATTATGT-TCCAGGA-AAATACTGATGGGG--AAGGGAGCCTGTCATC----CTAGGAGGCTCCTACCAAGGGG-AGACCATGCAG------AAA-CCTGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359980 375 - 852752 TAATTTTGAA-------------CTTTCGTGCTGAGGGTTGAGCTTCTTTATTTCTGGAGATGTTCAATTCCCTAGAATCTGAGCTCC----AGGT--TAC-TTTAAGGCATTTCCTATGTG---TA-TTGTATTTCCTGCTTTCCTTGCTTCTTTGGTATTCTCTGGAATGTGAGGAAGCTCCTTCATTTACTTCCCAATAAACTTTATTTCCCTGGCATAGTAAA--TGTGTTTCTCATTCATATTCATGCCTTGTAAAACACTCATCATGGATGTTTCAT-GAAATAACC--CTTCATTAGGAGGATGAAGTGGGTTAAACAACCGGCCCAAGCCATTGTGC-TCCAT--------------------AGGTGGGATGCCCTC----CTGTGACGCTCCTGCCAAG----AGACCGCACAGA-----AAA-CCTGA i dasNov3.JH570468 C 0 C 0 a score=731187.000000 s hg38.chr17_GL383564v2_alt 55487 48 + 133151 CCTTCAATACCCATG-----CTTACCTTGCCTTGACT----ACAGGGCCCTTGGCAA s panTro5.chr17 16249385 48 + 83181570 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156869 48 + 83442489 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991882 48 + 4267968 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972285 48 - 2193130 ccttgaatacccatg-----cttgccttgccttgact----GCAGGGCCCTTGGCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044386 48 - 77216781 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956995 48 - 80997621 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013237 48 + 10377808 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900353 48 - 8458610 CCTTCAATACCCATG-----CTTGTCTTGCCTTGACT----ACAGGGCCCTTGGCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856097 48 + 75148670 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079537 48 + 4244037 CCTTCAATACCCATG-----CTTGTCTTGCCTTGACT----ACAGGGCCCTTGGCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107391 48 + 4569836 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1790822 52 + 3513951 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACTGCAGACAGGGCTCTTGGCAA i saiBol1.JH378271 C 0 I 1090 s cebCap1.NW_016107730v1 1839725 48 + 1920343 CCTTCAATACCCATG-----CTTGCCTTACCTTGACT----ACAGGGCTCTTGGCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954528 53 - 7032639 CCTTCAATACCCATGCTTGCCTTGCCTTGCCTTGACT----ACAGGGCTCTTGGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35881398 48 - 65901067 CCTTCATCAGCCATG-----CCCATCTTGCCTTGACT----GCAGGACCTTTGGCAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968155 47 + 8555354 CCCTCA-AACCCATG-----CTCATCTTGCCTTGAAT----GCAGGGCTTTTGGCAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776524 48 + 28711273 TCTTCAGCACCCACA-----ACCTTCTTGCCTTGCCT----ACAGGGCACTTGGCAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045394 48 - 122082543 CCATGAACACCCAAG-----CCCATTTTGCTGTGACT----GCAGGGCCCTTGACTA i mm10.chr11 I 1 C 0 s canFam3.chr9 21381208 48 + 61074082 CCTCCAACACTCATG-----CCCATCTTGCCTTGGCT----GCAATGTCCTTGGCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 360355 48 - 852752 ACTTCAGCTCCCCTG-----CCCATCTTGCCATGGCT----GCAGGGTCCTTGGCAA i dasNov3.JH570468 C 0 C 0 e calJac3.chr5 46068814 724 - 159171411 I a score=43599.000000 s hg38.chr17_GL383564v2_alt 55535 3 + 133151 TTT- s panTro5.chr17 16249433 3 + 83181570 TTT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156917 3 + 83442489 TTT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991930 3 + 4267968 TTT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972333 3 - 2193130 TTT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044434 3 - 77216781 TTT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957043 3 - 80997621 TTT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013285 3 + 10377808 TTT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900401 3 - 8458610 TTT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856145 3 + 75148670 TTT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079585 3 + 4244037 TTT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107439 3 + 4569836 TTT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069538 3 - 159171411 ttt- i calJac3.chr5 I 724 C 0 s saiBol1.JH378271 1791964 3 + 3513951 ttt- i saiBol1.JH378271 I 1090 C 0 s cebCap1.NW_016107730v1 1839773 3 + 1920343 TTT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954581 3 - 7032639 ttt- i aotNan1.NW_018502359v1 C 0 I 1098 s micMur3.chr16 35881446 3 - 65901067 TTT- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968202 3 + 8555354 TTT- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776572 3 + 28711273 TTT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045442 3 - 122082543 TTC- i mm10.chr11 C 0 C 0 s canFam3.chr9 21381256 1 + 61074082 --T- i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 360403 3 - 852752 -TTA i dasNov3.JH570468 C 0 C 0 a score=16670.000000 s hg38.chr17_GL383564v2_alt 55538 1 + 133151 T s panTro5.chr17 16249436 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156920 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991933 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972336 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044437 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957046 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013288 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900404 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856148 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079588 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107442 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069541 1 - 159171411 t i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1791967 1 + 3513951 t i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839776 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 I 1093 s micMur3.chr16 35881449 1 - 65901067 T i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968205 1 + 8555354 T i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776575 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045445 1 - 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 21381259 1 + 61074082 T i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 360406 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6954584 1098 - 7032639 I a score=38067.000000 s hg38.chr17_GL383564v2_alt 55539 6 + 133151 GCAAAG- s panTro5.chr17 16249437 6 + 83181570 GCAAAG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156921 6 + 83442489 GCAAAG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991934 6 + 4267968 GCAAAG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972337 6 - 2193130 GCAAAG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044438 6 - 77216781 GCAAAT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957047 6 - 80997621 GCAAAT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013289 6 + 10377808 GCAAAT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900405 6 - 8458610 GCAAAT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856149 6 + 75148670 GCAAAT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079589 6 + 4244037 GCAAAT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107443 6 + 4569836 GCAAAT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069542 6 - 159171411 GAGAAT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1791968 6 + 3513951 GAGAAT- i saiBol1.JH378271 C 0 C 0 s micMur3.chr16 35881450 6 - 65901067 GAGAAT- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968206 6 + 8555354 GAGAAT- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776576 6 + 28711273 GAGAAT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045446 3 - 122082543 ---AAG- i mm10.chr11 C 0 I 1 s canFam3.chr9 21381260 4 + 61074082 --AAGT- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 360407 6 - 852752 -AAGATT i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6954584 1098 - 7032639 I e cebCap1.NW_016107730v1 1839777 1093 + 1920343 I a score=1306559.000000 s hg38.chr17_GL383564v2_alt 55545 83 + 133151 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTCTCCTAAACTGCCTGA s panTro5.chr17 16249443 83 + 83181570 CCTCCCCAGACTTCACTGT-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTCTCCTAAACTGCCTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156927 83 + 83442489 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTCTCCTAAACTGCCTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991940 83 + 4267968 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGCTCTGCTTCCCTTTCTCCTAAACTGCCTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972343 83 - 2193130 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTTTCCTAAACTGCCTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044444 83 - 77216781 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957053 83 - 80997621 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013295 83 + 10377808 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900411 83 - 8458610 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAACTGCCTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856155 83 + 75148670 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079595 83 + 4244037 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAACTGCCTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107449 83 + 4569836 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTTCCTTTCTCCTAAACTGCCTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069548 83 - 159171411 CCTCCCCAGAGTTCACTGC-TATCTCTGGCTTTCACCCTCATCAGAATAG---AATGTTCTGCTTTCCTTTTTCCTAAACTGCCCGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1791974 83 + 3513951 CCGCCCCACAGTTCACTGC-TATCTCTGGCTTTCACCCTCATCAGAAGAG---AATGTTCTGCTTCCCTTTTTCCTAAACTGCCTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1840870 83 + 1920343 CCTCCCCAGAGTTCACTGC-TATCTCTGGCTTTCACCCTCATCAGAATAG---AATGTTCTGTTTCCCTTTTTTCTAAACTGCCTGA i cebCap1.NW_016107730v1 I 1093 C 0 s aotNan1.NW_018502359v1 6955682 83 - 7032639 CCTCCCCAGAGTTCACTGC-TATCTCTGACTTTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTTTCCTAAACTGCCTGA i aotNan1.NW_018502359v1 I 1098 C 0 s micMur3.chr16 35881456 83 - 65901067 CTTCCCCAAACCTCACTGC-TATCTCCCATGGTCACCCTCATCAGAATGG---AATTTTCTGCTCCCCTTTCTCCTTAACTGCCTGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968212 83 + 8555354 CCTCCCCTAACCTCACTCC-TATCTCCCATGATCACCCTCATCAGAATGG---AATTTTCTGCTTCCCTTTCTCCTAAACTGCCTGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776582 83 + 28711273 CCTCCCCAAACCCCACTGT-TATCTCCCACTATCACCCTCATCGGAATGG---AATTTTCTGCTTCTCCTTCTCCTAAACGGCCTGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045450 66 - 122082543 CTCCCCCA---TTCCCTGAGTTTCTCAAATTCTCACCCTCATTAG------------------TCTTCTTGCTCTTAAACTACATGA i mm10.chr11 I 1 I 1654 s canFam3.chr9 21381265 86 + 61074082 TCACCTCAAACCTCACTGC-TGCCTCTCATGTTGACCCTCATCACCAGGGGTTGATTCTCTGCTTCCCTTTCTCCCAAACTGCCTAA i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 360413 82 - 852752 CTTCCCTAAACCTCCCTGC-TATTTCCCATTGTCAATC-CTTCTTACTGG---AATTCTCTTCTCCTTTTTCTCCCAAACTACCTAA i dasNov3.JH570468 C 0 C 0 a score=2067879.000000 s hg38.chr17_GL383564v2_alt 55628 153 + 133151 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTGCTGCCTTGCTGAT------------ATAGATACCTACTCCTCCCTTAAAATACACCTTCATTGATTTCCATAACCCTGCACACTCTGGGT s panTro5.chr17 16249526 153 + 83181570 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGTTTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTGAT------------ATAGATACCTACTCCTCCCTTAAAATACATCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157010 153 + 83442489 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGTTTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTGAT------------GTAGATACCTACTCCTCCCTTAAAATACATCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992023 153 + 4267968 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTGAT------------ATAGATACCTACTCCTCCCTTAAAATACACCTTCAATGATTTCCATAACCCTGCACACTCTGGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972426 153 - 2193130 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTGTCTGCTGCTCCTGCCTTGCTATT------------ATATATACCTACTCCTCCCTTAAAATACACCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044527 153 - 77216781 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAACGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957136 153 - 80997621 AGAACCTACAGAAACTA--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAGCCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013378 153 + 10377808 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATtctctcctc--tcagcctctctgctactcctgccttgctAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900494 153 - 8458610 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856238 153 + 75148670 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTAAT------------ATAGATACCTGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACCCTGGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079678 153 + 4244037 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGACCAGTGATTCTCTCCTC--TCAACCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107532 153 + 4569836 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTAAT------------ATAGATACCTGCTCCTCCCTCGAAATGCACCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069631 138 - 159171411 AGAAATAACAGAAA-----------------------------CTGTTC--AAAGAGCAGTGAGTCTCTCCTC--TCAATCTCTCTGCTGCTCCTGCCTTGGTAAC------------ATAGATACCTCCTCCTCCCTCGAAAGGCACCTTCATTGATTTCCATAACCCTGCACACTCTGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792057 152 + 3513951 AGAAACAACAGAAACTG--------------CCTCTACAGAAGCTGCTC--AAAGAGCAGTGAGTCTCTCCTC--TCAGTCCCTCTGCTGTTCCTGCCTTGCTAAT------------ATAGATACTTGCTCCTCCCTCGAAATGCATCTTCA-TGATTTCCATAATCCTGCAAACTCTGGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1840953 153 + 1920343 AGAAACAACAGAAACTG--------------CTTCTACAGAAACTGCTC--AAAGAGCAGGGAGTCTCTCCTC--TCAATCTCTCTGCTCCTCCTGCCTTGCTAAT------------ATAGATACCTGCTcctccttcgaaatgcaccttcattgatttccataaccctgcacactctgggc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6955765 153 - 7032639 AGAAACAACAGAAACTG--------------CTTCTACAGAAACTGCTC--CAAGAGCAGTGAGTCTCTCCTC--TCAATCTCTCTGCTGCCCCTGCCTTGCTAAT------------ATAGATACCTGCTCCGCCCTCGAAATGCACCTTCACTGATTTCCATAATCCTGCACACTCTGGGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35881539 141 - 65901067 AG----------ACCAG--------------GTTCTGTAGAAAATGCTC--CAAGAGCAGCGAACCTCTTCTC--TCAACCTCTCTGTTGCACCTGCATTG--------------ACAATAGATACCTGCTCCTCCCTCGACATGCACCTCCATCAATTTCCATAACCCTGCACACTCTAGCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968295 136 + 8555354 AG----------ACCAG--------------GTTCTGTAGAAACTGCTC--AAAGAGCAGCGAACCTCTCCTC--TCAGCCTTTCTGGTGCACCTGCAT-------------------ATAGATACCTACTCCTCCCTTGAAATGCGCCTTTGTTGATTTCCATAACCCCGCACACTCCAGGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776665 153 + 28711273 AG----------ACCTA--------------CTTCTGTAGAAACTACTC--AATGGGCAGTGAGCCACTTCTC--TCAACCTTT-TGCGGCACCTGCATTGCTGACATATTGGCAATAATAGATACCTGCTCCTTTCACAAACTGTACCTTTGTTGATTTCCATAA-ACTGTACACTCTAGGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21381351 147 + 61074082 -----------AGACTGA-------------CTTCTGTAGAAACTACTCCTAAAGAGCAGCTGCCCTCTCCCCTTTCAACTTGTCTTCTATATCTGAATGACCAGT------------ATAGAAGCCTGGCTTTCCCTCAAAATGTACCTTCAATGATTTACATAAATCCACACATTCTGGGT i canFam3.chr9 C 0 I 6382 s dasNov3.JH570468 360495 153 - 852752 -----------AGACTGGCTGTGTTTCTACTTCTCTGTAGAAACTGCTC--AGAGAGCAGCAA---TCTCCAT--TCAACCTCTCTGCTGCACCTGCTTTGCCAAA------------ATAGCTACTTTTTCCTCCCTCAAAACCCACCTTCATTGATTTCCAAAACCTCACATACACTGGGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22045516 1654 - 122082543 I a score=5294622.000000 s hg38.chr17_GL383564v2_alt 55781 384 + 133151 -CTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTTAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCGTGTAGATCTAGCTCCTCTATGCTGATGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATGCCTGACATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA s panTro5.chr17 16249679 384 + 83181570 -CTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCATGTAGATCTAGCTCCTCTATGCTGCTGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCTGCCCACTTGTTATGCCTGGCATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157163 384 + 83442489 -CTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCATGTAGATCTAGCTCCTCTATGCTGCTGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCTGCCCACTTGTTATGCCTGACATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992176 384 + 4267968 -CTTCTTGTAATATCCCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCATGTAGATCTAGCTCCTCTATGCTGATGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATGCCTGACATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972579 382 - 2193130 -CTTCTTGTAATATCTCTAA-TTACCTCTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCCTTCTACGTCCCTGTTCATGTAGAACTAGCTCCTCTATGCTGATGACTCCCACATCTCCCTCTCATCTCAGCTCAGTTTCTAGGTTTTCTGTTGCGCATACGACAGTTTCACTTGGTATCAGGTCATTACATCATG-TTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTCGCCGCCCACTTGTTATGCCTGACATGTTGTCCTCCAAATAGACCCTTTAAATGCAG-----------TCCTTACC-TTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044680 384 - 77216781 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957289 384 - 80997621 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCCCCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTGTCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013531 384 + 10377808 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900647 384 - 8458610 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAAAGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTACGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCTTTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856391 385 + 75148670 -CTTCTTGAAATATCGCTAATTTACCTGTTCTCTGTTGTCTTGTTAG-CTATCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCGTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079831 384 + 4244037 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGCCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAAAGAAAAAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTACGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACAACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107685 384 + 4569836 -CTTCTTGAAATATCGCTAA-TTACCTCTACTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTGTTCTTTCTACGTCCCTGTTCATGTAGAACTAGCCCTTCTATGCTGATGACTCCCACATCTCCCTCTCATCTCAGCTTGGTTTCCAGGTTTTCTGTTGCGCATACGACAGTTTCATTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAATGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCCA-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTATTT--CCCCT---AGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069769 379 - 159171411 -TTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTTTCTTCCCTTTTT-GT-CCCAAATGAAGGAAACACGTACATCCTCAGCCCTCTGTCTTTCTCCTTCTACGTCCCTGTTCATGTAGAACTAGCTCCTCTATGCTGATGACTCCCGCATCTCCC-----TCTCAGCTCGATTTCCAGGTTTTCTGTTGTGAATGGGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAATGTATTGTTTTCCAACCTGGTTCATCTCACTGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGACCCTTTAAATTCAG-----------TCCTTACCTTTCCGCTCTTCGAGTTTCTTCTTT--CCCCT---AGG i calJac3.chr5 C 0 I 2118 s saiBol1.JH378271 1792209 385 + 3513951 -TTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCATCTTAG-CTTTCTTCCCCTTTTAGT-CCCAGATGAAAGAAACACTTACATCCTCAGCCCTCTGTCTTTCTCCTTCTATGTCCCTGTTCATGTAGAACTAGCTCCTCTATGCTGATGGCTCCCACATCTCCCTCTCATCTCAGCTCGATTTCTGGGTTTTCTGTTGCGCATGGGACAGTTTCACTTGGTATCAGGTCATTATATCATGTTTAATTGGACTAAACCTTATTGTTTTCCAAACTGGTTCATCTCACTGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGACCCTTTAAATTCAG-----------TCCTTACCTTTCCCCTTTTCGAGTTTATTCTTT--CCCCT---AGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841106 385 + 1920343 -tttcttgtactatctctaa-ttacctgttctctgttgtcttgttag-ctttcttcccctttttgt-cccagatgaaggaaacacttacatcctcggccctctgtctttctccttctacatccctgttcatgtagaactagctcctctatgctgatggctcccacatctccctctcaccttagctcgatttccaggttttctgttgcgcatgggacagtttcacttggtatcaggtcattacatcatgtttaattggactaaaatgtattgttttccaaactggttcatctcacTGCCCACTTGTTATACCTGACATGTTGTCCTCCACATAGACCCTTTAAATTCAG-----------TCCTTACCTTTCCTCTCTTCTAGTTTATTCTTT--CCCCT---AGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6955918 385 - 7032639 -TTTCTTGTAATATCTGTAA-TTACCTGTTTTCTGTTGTCTTGTTAG-CTCTCTTCCCCATTTTGTCCCCAAATGAAGGAAACACTTACATCCTCAGCCCTCTGTCTTTCTCCTTCTACGTCCCTGTTCATGTAGAACTAGCTCCTCTGTGCTGATGACTCCCACGTCTCCCTCTCATCTCAGCTTGATTTCCAGGTTTTCTGTCGCGCATGGGACAGTTTCACTCGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATTGTTTTCCAAACTGGTTCATCTCACTGCCCA-TTGTTATACCTGACATGTTGTCCTCCAAATAGACCCTTTAAATTCAG-----------TCCTTACCTTTTCCCTCTTCGAGTTTATTCTTT--CCCCC---AGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35881680 353 - 65901067 -CCTTTGGTAACAGCTCAGA-TTATCTG-----------------------TCTTCCCTTTTGTGT-CCCAAATGGAGGAAACACCCAGATCCCCAGCCCTCTGTTTTTCTCCTTCTATATCCCTGTTTATGGAGAACCAGCACCTCTACCCTGATGA-------------CTCTCATCTCAGCTTACGCTCCAGGTTTTCAGTTGCCCATAAGACAATTTCACTGGGCACCAGACCTTTACATCATGTTTAATTGGACTAAAACTTATC-TTTGACAAACTGGTTCATCTTGCTACCCACTTGTTATACCTGAAA---TGTCCTCCAAAAGGACCCTTTAAGTGCAGTCAACCCTCTCTCCTTACCTTT-CTCTCTTAAAGTTTCTTCTTT--CCCCT------ i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968431 366 + 8555354 -CCTTTTGGAACAGCTCAGA-TTACCTG-----------------------TCTTCCCTTTTTTGT-CCCAAATGGAGGAGACATCTAGATCCCGAGCCCTCTGTTTTTCTCCTTCTATATCCCTGTTCATGGAGAACTGGCACCTCTACCCTGATGGCTCTCACATCTCCCTCTCACCTCAGCTTAAGTTCCAGGTTTTCAGTTGCCCATAAGACAGTTTCACTGGGCACCAGACCATTACATCACGTTTAATTGGACTAAAGCTTATC-TTTGACAAACTGGTTCATCTTGCTACCCATTTGTTATATCTGACG---TGTCCTCCAAAAGGACCCTTTAAGTGCAATCAACCCTCTCTCCTTACCTTT-CCCTCTGCAAGTTTCTTCTTT--CCCCT------ i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776818 354 + 28711273 -CCTTTTCTAATAGCTCTGA-TTATCTG-----------------------TCTTCCTTTTTTGGT-CCCAACTGAAAGAAACACCTAGATCCTAAGCCCTCTGTTTTTCTCCC------TCCCTATTCACAGAGAACTAACCCCTCTACTACAATGGCTCCCACATCCTGCTCTCACCTTGGCTCAAGTTTCAGGTTCTTATTTGCCCATAA------------GGGCATCAGGCCATTATATCATGTTTAACCAATCTAAAACTTACC-TTTGACAAGCTGGTTCATATTGCTACCCACTTGCTACTCCTGATGTGTTGTCCTCCAATAAGACCCTTCAAGGGCAGTCCACCCTCTCTCTTTACCTTT-CTCTCTTCAAGTTCATTCTTC--CCCTTAGG--- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21387880 372 + 61074082 -CTTTTT----TATCTCCTA-TTACAGGTTCCCCAGCTCCCAATTAACCTGACTTCCCCTTTCTGT-CCCAACTGGGGGATAGGCCTAGATCCTCTGCC----ATGTTTATTTTTCTCCATCCCTGTTCAGGGAGGACTAGCTCCTCTATGCTGACCACCCCTGAAG----TTCTCATTTTAGCTCAAGTCCTGGGTCTTCAGTTGCACATAAGACAGTTTGACTTGGTATTAGGTTGCCACATTACATTTAATTGGACTCCAACTTATC-TTTGTCA---------TTCTTGTTACCCGCTTGTTATCCCCAACACTTTGTAATCCAAA--GACCCTTTAAATGAAGGCAAGCACCTCTCCCCACC-TTCCTCTTTTCAAGTTCGCTCTTT--CCTTT---AGG i canFam3.chr9 I 6382 C 0 s dasNov3.JH570468 360648 371 - 852752 CTTTTTTGTTACATCTCTGA-CTACCTGTTTTCTGTCTTCTGAGAAGTCTGTCTTCCCCTTTCTGT-CCCCAGCAGAGTAAATACCTAGATCCTCAGTTT--------------------TACTTATTCATGGAGaactaacatctctatgctgatgatgcccaagttgtgatcttataccagctcaagttccaggtttttggttgtccataggacagtatcatttggtattaggccatcacatcacatttaattgggctaaaacttaac-tTTGCCAAACTGGTTCATCTTGTTACCCACTTGTTAATACTG------TGTCTTCTAAAAAGACTCTT-AAGTGCAGGCTGGTCACTCTGCTCA-CTCCCACCTCTTCAAGTTTATTCTTTTCCTCCT---AGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22045516 1654 - 122082543 I a score=502170.000000 s hg38.chr17_GL383564v2_alt 56165 33 + 133151 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC s panTro5.chr17 16250063 33 + 83181570 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157547 33 + 83442489 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992560 33 + 4267968 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972961 33 - 2193130 TCTTTGCTCTTATCCGTAATGTTCTTCCATAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045064 33 - 77216781 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957673 33 - 80997621 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013915 33 + 10377808 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901031 33 - 8458610 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856776 33 + 75148670 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080215 33 + 4244037 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108069 33 + 4569836 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072266 33 - 159171411 TCTTTGCTCTTATCCATAATGTTCTCCCACAGC i calJac3.chr5 I 2118 C 0 s saiBol1.JH378271 1792594 33 + 3513951 TCTTTGCTCTTATCCGTAATGTTCTACCACAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841491 33 + 1920343 TCTTTGCTCTTGTCCATAATGTTCTCCCACAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956303 33 - 7032639 TGTTTGCTCTTCTCCGTAATGTTCTCCCACAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882033 33 - 65901067 TCTTTGCCCTTATCTACAATGTTCTTCCATAGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968797 33 + 8555354 TCTTTGCCCTTATCTACAATGTTCGTCCATAGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777172 33 + 28711273 TCTTTACCCTTATTTACAATGTTATCCCATGGC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21388252 33 + 61074082 TCTTTGCTCCTATTTATAATGTTCTTCTATAAC i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 361019 24 - 852752 TCTTTGTACT---------TGGTCTTCTGTATC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22045516 1654 - 122082543 I a score=1059363.000000 s hg38.chr17_GL383564v2_alt 56198 66 + 133151 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA s panTro5.chr17 16250096 66 + 83181570 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157580 66 + 83442489 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992593 66 + 4267968 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972994 66 - 2193130 CTCTTTATCATTTCATTTTATATAATTTCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045097 66 - 77216781 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGTATCTC-CCC-CAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957706 66 - 80997621 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013948 66 + 10377808 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901064 66 - 8458610 CTCTTTATCATTCCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856809 66 + 75148670 CTCCTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080248 66 + 4244037 CTCTTTATCATTCCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108102 66 + 4569836 CTCTTTATCATTTCATTTTCTATAATTCCAAAAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072299 68 - 159171411 CTCTTTATAATTTCATTTTCTGTAATTCCAAGAAAGGGCCAATGTTCATTAAGTATCTC-CCCTCAAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792627 62 + 3513951 CTCTT----ATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841524 66 + 1920343 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGACAGTGTTCATTAAGCATCTC-CCC-CAAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956336 64 - 7032639 CTCT--ATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTT-CCC-CAAAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882066 66 - 65901067 CTCCTTGTCATTTCATTTCCTATAATTCTAAGAAA-GGCTGATGTTCATTAAGCACCCC-CCA-AAAAA i micMur3.chr16 C 0 I 20 s proCoq1.NW_012135969v1 2968830 66 + 8555354 CTCCTGGTCATTTCATTTCCTATAATTCCAAGAAA-AGCTGATGTTCATTAAGCATCCC-CCC-CAAAA i proCoq1.NW_012135969v1 C 0 I 5 s otoGar3.GL873537 22777205 67 + 28711273 CTCTTTATAATTTAATTTCCTAAAATCCCAAGAAA-AGCTGATGTTCATTAAGCTCCCCACCT-CAAAA i otoGar3.GL873537 C 0 I 3 s mm10.chr11 22047170 61 - 122082543 CTCCTTGT-ATTCCATGGCCTATAATTCTAAGGAA-AGCCAGTGTTCACTG----TTTC-TCT-CAATA i mm10.chr11 I 1654 C 0 s canFam3.chr9 21388289 62 + 61074082 TTCTATATCACTTTATTTTCTATAATTTCAAGAAA-GGCCACTGTTCATTG----TCTC-CTC-CAACA i canFam3.chr9 I 4 I 2 s dasNov3.JH570468 361043 66 - 852752 CTCTTCACTCTTACATTTCCTGTAGTTCCAAGAAA-GGCCAATACTAATTAAGCCTCTC-TTA-ACAAA i dasNov3.JH570468 C 0 C 0 a score=129104.000000 s hg38.chr17_GL383564v2_alt 56264 23 + 133151 CATT-AATCTT-AC------CCCACACCCCA s panTro5.chr17 16250162 18 + 83181570 CATT-AATCTT-AC------CCCA-----CA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157646 18 + 83442489 CATT-AATCTT-AC------CCCA-----CA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992659 18 + 4267968 CATT-AATCTT-AC------CCCA-----CA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973060 19 - 2193130 CATTAAATCTT-AC------TCCA-----CA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045163 18 - 77216781 CATT-AATCTT-AC------TCCA-----CA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957772 18 - 80997621 CATT-AATCTT-AC------TCCA-----CA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014014 18 + 10377808 CATT-AATCTT-AC------TCCA-----CA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901130 18 - 8458610 CATT-AATCTT-AC------TCCA-----CA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856875 19 + 75148670 CATT-AATCTTAAC------TCCA-----CA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080314 18 + 4244037 CATT-AATCTT-AC------TCCA-----CA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108168 18 + 4569836 CATT-AATCTT-GC------CCCA-----CA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072367 18 - 159171411 CATT-AATCTT-AA------CCCA-----CT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792689 18 + 3513951 CATT-AATCTG-AA------CCCA-----CT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841590 18 + 1920343 CATT-GATCTT-AA------TCCA-----CT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956400 18 - 7032639 CATT-AATCTT-AA------CCCA-----CT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2968901 12 + 8555354 CAAT-TACCAT-AC----------------- i proCoq1.NW_012135969v1 I 5 C 0 s otoGar3.GL873537 22777275 17 + 28711273 CATT-GATCTT-ACTGAAT------------ i otoGar3.GL873537 I 3 C 0 s mm10.chr11 22047231 21 - 122082543 CACA-ACTCTC-AC---GTCTTCA-----TA i mm10.chr11 C 0 I 3 s canFam3.chr9 21388353 15 + 61074082 CATT-AATCCT-AT------TCC-------- i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 361109 18 - 852752 TATT-AACTCT-AC------CCCT-----CC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35882132 20 - 65901067 I a score=618448.000000 s hg38.chr17_GL383564v2_alt 56287 33 + 133151 CCCCACTTGCCTCATCCCTGAATTTTTAAAGCT s panTro5.chr17 16250180 33 + 83181570 CCCCACTTGCTTCATCCCTGAATTTTTAAAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157664 33 + 83442489 CCCCACTTGCTTCATCCCTGAATTTTTAAAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992677 32 + 4267968 -CCCACTTGCCTCATCCCTGAATTTTTAAAGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973079 33 - 2193130 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045181 33 - 77216781 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957790 33 - 80997621 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014032 33 + 10377808 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901148 33 - 8458610 CTCCACTTGCCTCATCTCTGAATTTTTAAAGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856894 33 + 75148670 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080332 33 + 4244037 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108186 33 + 4569836 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072385 33 - 159171411 CCCCACTTGCCTCAACTCTGAATTTTTAAAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792707 33 + 3513951 CCCCACTTGCCTCATCTCTGAATTTCTAAAGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841608 33 + 1920343 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956418 33 - 7032639 CCCCACTTGCCTCATCTCTGAATTTTTAAAGCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882152 33 - 65901067 CCCTACTTGCCTCATCTCTGAATTTTTAAAGCT i micMur3.chr16 I 20 C 0 s proCoq1.NW_012135969v1 2968913 33 + 8555354 CCCTACTTGCCTCATCTCTGAATTTTTAAAGCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777292 33 + 28711273 CCCTACTTGCTTCACCTCTGAATTTTTAAAGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047255 27 - 122082543 ------TTGCCCCATCTTTGAATTTTTAAAGCT i mm10.chr11 I 3 C 0 s canFam3.chr9 21388368 31 + 61074082 --CTACTTGACTCATATCTAAATTATTAAAGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 361127 33 - 852752 CCTCACTTTCCTCATCACTGAATCTTTCAAGTT i dasNov3.JH570468 C 0 T 5470 a score=1325505.000000 s hg38.chr17_GL383564v2_alt 56320 100 + 133151 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTTATTTAATCCTATCTGATTGACACAACTGCAATcaatcatctatag-tgtgtgctgggtactgtggg s panTro5.chr17 16250213 100 + 83181570 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACTGCAATcaatcatctatag-tgtgtgctgggtactgtggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157697 100 + 83442489 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACTGCAATCAATcatctatag-tgtgtgctgggtactgtggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992709 100 + 4267968 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACGGCAATCAATcatctatag-tgtgtgctgggtactgtggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973112 102 - 2193130 TTCAGTTTTATAG--GCCACAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACTGCGATcaatcatctattg-tgtgtgctgggtactgtggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045214 102 - 77216781 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAGTcatctactg-tttgtgctggatactgtggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957823 102 - 80997621 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAGTCATCTACTG-TTTGTGCCGGATACTGTGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014065 102 + 10377808 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAGTcatctactg-tttgtgccggatactgtggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901181 102 - 8458610 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAATcatctactg-tttgtgccggatactgtggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856927 102 + 75148670 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGATGCAACTACAATCAATCATCTACTG-TTTGTGCCGGATACTGTGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080365 102 + 4244037 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAATcatctactg-tttgtgccagatactgtggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108219 99 + 4569836 TTCAATTTTATAG--GCCACAATCTCAATTAT--------CCGTTTAATTTAATCCTATCTGATTAACACAACTACAATCA---atctactg-tgtgtgccaggtattgtggg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072418 101 - 159171411 TTCAATTTTATAG--GC-ACAACCTCAATTAT--------CCATTTAATTTAATCCTGTCTGATTGACACAACTGCAACCAATCACCTACTG-TGTGTGCCGGGTACTGCGGG i calJac3.chr5 C 0 I 12 s saiBol1.JH378271 1792740 101 + 3513951 TTCAATTTTATAG--GC-ACAACCTCAATTAT--------CCATTTAATTTCATCCTATCTGATTGACACAACTGCAATCAATcacctattg-tgtgtgccgggtactgtggg i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1841641 97 + 1920343 TTCAATTTTATAG--GC-ACAACCTCAAATAT--------CCATTTAATTTAATCCTATCTGATTGACACAACCA----CAATcacctattg-tgtgtgccgggtactgtggg i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6956451 101 - 7032639 TTCAATTTTATAG--GC-ACAACCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACCACAATCAATcacctattg-tgtgtgccgggtactgtggg i aotNan1.NW_018502359v1 C 0 I 1 s micMur3.chr16 35882185 102 - 65901067 CTTAAGTCTGTAT--GCCATAATCTCAATTAT--------GCATTCAAATTAattctatccaattgacacaactgccattgatcatctgttg-tgtgtgccgggtactgtgtg i micMur3.chr16 C 0 I 1 s proCoq1.NW_012135969v1 2968946 102 + 8555354 GTCAAGTCCATAT--GCCACAATCTCAATTAT--------CCATTCAAATTAATTCTATCTGATTGACACAACTGCCattgatcatctgttg-tgtgtgccaggtactgtgtg i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22777325 100 + 28711273 CTCACATCCA-AT--GCCACGATCTCAACGAT--------CCATTCACATTAATTCTACCTGAttgacacaacttctatcagtcatctatta-cgtgtgccaggtattgtgt- i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22047282 113 - 122082543 GTCAAGTCTATAATTGTTATGTATCCAGTTATTATTATTATTATTTCAGTTAATGATCTCTGACTTAAACAAATACAATCAATTATCTATTGTTGTATGCCAAACGCTATGTC i mm10.chr11 C 0 I 1 s canFam3.chr9 21388399 101 + 61074082 CTCAATTTAATCA--GCCACCATCTCAATTTT--------TCATTTGATTTGACACTATTTAACCTACACAACTGCAATCAACCATCTTCTG-TGTGTGTCA-ATACTGTGTA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 5470 - 852752 T a score=5500.000000 s hg38.chr17_GL383564v2_alt 56420 1 + 133151 c s panTro5.chr17 16250313 1 + 83181570 c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157797 1 + 83442489 c i panPan2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973214 1 - 2193130 c i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045316 1 - 77216781 c i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957925 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014167 1 + 10377808 c i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901283 1 - 8458610 c i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857029 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080467 1 + 4244037 c i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108318 1 + 4569836 c i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047395 1 - 122082543 I e proCoq1.NW_012135969v1 2969048 1 + 8555354 I e micMur3.chr16 35882287 1 - 65901067 I e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21388500 0 + 61074082 C e otoGar3.GL873537 22777425 1 + 28711273 I e aotNan1.NW_018502359v1 6956552 1 - 7032639 I e cebCap1.NW_016107730v1 1841738 1 + 1920343 I e saiBol1.JH378271 1792841 1 + 3513951 I e calJac3.chr5 46072519 12 - 159171411 I e gorGor5.CYUI01015385v1 3992809 0 + 4267968 C a score=672317.000000 s hg38.chr17_GL383564v2_alt 56421 52 + 133151 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtt-t s panTro5.chr17 16250314 52 + 83181570 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtt-t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157798 52 + 83442489 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtt-t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992809 52 + 4267968 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtt-t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973215 52 - 2193130 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtt-t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045317 52 - 77216781 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtc-t i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957926 52 - 80997621 GGTACTGAGAA-ACACAAATAA-GTGAATCCCAGTCTCGGCCCACAGC-ATGTC-T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014168 52 + 10377808 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtc-t i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901284 52 - 8458610 agtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtc-t i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857030 52 + 75148670 GGTACTGAGAA-ACACAGATAA-GTGAATCCCAGTCTCGGCCCACAGC-ATGTC-T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080468 52 + 4244037 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtc-t i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108319 52 + 4569836 agtactgagaa-atacaaataa-gtgaatcccagtctcggcccacagc-atgtc-t i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072531 52 - 159171411 GGTGCTGAGAA-ACACAAATAA-ATGAATCCCAGTCTCAGCCGACAGC-CTGTT-T i calJac3.chr5 I 12 C 0 s saiBol1.JH378271 1792842 52 + 3513951 ggtgctgagaa-acacaaatca-gtgaatcccagtctcagccaacagc-ctgtt-t i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1841739 52 + 1920343 ggtgctgagaa-acacaaataa-gtgaatctcagtctcagccgacagc-ctgtt-t i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6956553 52 - 7032639 ggtgctgagaa-acacaaatca-gtgaatcccagtctcagccgacagc-ctgtt-t i aotNan1.NW_018502359v1 I 1 C 0 s micMur3.chr16 35882288 51 - 65901067 ggtcctgagaa-gcacaaataa-gtgaaccccagtcctggcccaccgc-atgtt-- i micMur3.chr16 I 1 C 0 s proCoq1.NW_012135969v1 2969049 52 + 8555354 ggtaccgagaa-gcacaagtaa-gtgaaccccagtcctggcctatggc-acgttt- i proCoq1.NW_012135969v1 I 1 I 34 s otoGar3.GL873537 22777426 30 + 28711273 ggtgctgacat-gtaca---------aaccccagt--------------atatt-- i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22047396 47 - 122082543 ------GAAAA-GCAGAAACCCTACAAACTCCAGTCCTGGCTCATAGCAATATT-- i mm10.chr11 I 1 C 0 s canFam3.chr9 21388500 53 + 61074082 GATGCTGAGAGCACATGGATAA-GTGAGCCCCAGGCCTGGCCAACAGC-ATGTT-C i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 5470 - 852752 T a score=446347.000000 s hg38.chr17_GL383564v2_alt 56473 34 + 133151 tacagtttagagtggatgagac---aaaGCTACAGTC s panTro5.chr17 16250366 34 + 83181570 tacagtttagagtggatgagac---aaaGCTACAGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157850 34 + 83442489 tacagtttagagtggatgagac---aaagctacagtc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992861 34 + 4267968 tacagtttagagtggatgagac---aaagctacagtc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973267 34 - 2193130 tacagtttagagtggatgagac---aaagctacagtc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045369 34 - 77216781 tacagtttagagtgcatgagac---aaagctacagtc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957978 34 - 80997621 TACAGTTTAGAGTGCATGAGAC---AAAGCTACAGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014220 34 + 10377808 tacagtttagagtgcatgagac---aaaGCTACAGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901336 34 - 8458610 tacagtttagagtgcatgagac---aaagctacagtc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857082 34 + 75148670 TACAGTTTAGAGTGCATGAGAC---AAAGCTACAGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080520 34 + 4244037 tacagtttagagtgcatgagac---aaaGCTACAGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108371 34 + 4569836 tacagtttagagtgcatgagac---aaagctacagcc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072583 34 - 159171411 TATAGTCTAGAGTGGATGAGAC---AAAGATACAGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792894 34 + 3513951 tatagtttagagtggatgagac---aaagatacagtc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841791 34 + 1920343 tatagtttagagtggatgagac---aaagatagagtc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956605 34 - 7032639 tatagtttagagtggatgagag---aaagatacagtc i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882339 34 - 65901067 tatagtctagagtggatgagac---aaagaggtggcc i micMur3.chr16 C 0 I 47 s otoGar3.GL873537 22777456 34 + 28711273 tacagtccagaatggatgagac---aaagagataacc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047443 35 - 122082543 TACAGCCTGGAATGTGTAACACAAAAAAGATAGAT-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21388553 33 + 61074082 -ACAATCTAGAGTGAACAAGAC---AAGGAAACAACC i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969101 34 + 8555354 I e dasNov3.JH570468 361160 5470 - 852752 T a score=92279.000000 s hg38.chr17_GL383564v2_alt 56507 8 + 133151 ATCATAGA-- s panTro5.chr17 16250400 8 + 83181570 ATCATAGA-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157884 8 + 83442489 atcataga-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992895 8 + 4267968 gtcataga-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973301 8 - 2193130 atcataga-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045403 8 - 77216781 atcataga-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958012 8 - 80997621 ATCATAGA-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014254 8 + 10377808 ATCATAGA-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901370 8 - 8458610 atcataga-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857116 8 + 75148670 ATCGTAGA-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080554 8 + 4244037 ATCATAGA-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108405 8 + 4569836 atcataga-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072617 8 - 159171411 ATCATGGA-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792928 8 + 3513951 atcatgga-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841825 8 + 1920343 atcatgga-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956639 8 - 7032639 atcacgga-- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22777490 8 + 28711273 aTCATAGA-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047478 8 - 122082543 ATCATTGG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21388586 10 + 61074082 CTCATACAGA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969101 34 + 8555354 I e micMur3.chr16 35882373 47 - 65901067 I e dasNov3.JH570468 361160 5470 - 852752 T a score=716198.000000 s hg38.chr17_GL383564v2_alt 56515 54 + 133151 CAAATATCAGTGTGGCTCAAGAAAGGTGCAGATAAAGAATTACGAATTTCAGAT s panTro5.chr17 16250408 54 + 83181570 CAAATATCAGTGTGGCTCAAGAAAGGTGTAGATAAAGAATTACGAATTTCAGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157892 54 + 83442489 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTACGAATTTCAGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992903 54 + 4267968 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTACGAATTTCAGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973309 54 - 2193130 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTACAAATTTCAGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045411 54 - 77216781 caaatatcagtgtggcTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958020 54 - 80997621 CAAATATCAGTGTGGCTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014262 54 + 10377808 CAAATATCAGTGTGGCTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901378 54 - 8458610 caaatatcagtgtggcTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857124 54 + 75148670 CAAATATCAGTGTGGCTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080562 54 + 4244037 CAAATATCAGTGTGGCTCAAGAAATGAATAGATAAAGAATTATGAATTTCAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108413 54 + 4569836 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTATGAATTTCAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072625 54 - 159171411 CGAATACCAGTATGGCTCAAGAAAGGTGTAGATAAAGAGTTATGAATTTCAGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792936 54 + 3513951 caaataccagtgtggcTCAAGAAAGGTGTAGATAAAGAGTTATGAATGTCAGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841833 54 + 1920343 caaataccagtgtggcTCAAGAAAGGTGTAGATAAAGAGTTATGAATTTCAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956647 54 - 7032639 cacataccagtgtggcTCAAGAAAGGTGTAGATAAAGAGTTATGAATTTCAGGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2969135 54 + 8555354 cacaCATCAGTGCGGCTCGAGAAAGGTGTAAGTAAAAAATTGTGAATGTCAGAG i proCoq1.NW_012135969v1 I 34 C 0 s otoGar3.GL873537 22777498 43 + 28711273 ----------TAAAATTC-AAAAAGGTGTAAGTAAAGAACTATGAATTTCAGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047486 54 - 122082543 CAAACAGCAAGATGGCTCAAGGGAGATAAAAATAAAGAACTACAAATTTCAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21388596 54 + 61074082 CAAACAGCAGTGTGGCTCAAGAAGGGTGTAAATGAAGAATGATGAATTTCTGAA i canFam3.chr9 C 0 C 0 e micMur3.chr16 35882373 47 - 65901067 I e dasNov3.JH570468 361160 5470 - 852752 T a score=186752.000000 s hg38.chr17_GL383564v2_alt 56569 11 + 133151 GTGTGAGAGAA s panTro5.chr17 16250462 11 + 83181570 GTGTGAGAGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157946 11 + 83442489 GTGTGAGAGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992957 11 + 4267968 GTATGAGAGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973363 11 - 2193130 GTGTGAGAGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045465 11 - 77216781 GTGTGAGAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958074 11 - 80997621 GTGTGAGAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014316 11 + 10377808 GTGTGAGAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901432 11 - 8458610 GTGTGAGAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857178 11 + 75148670 GTGTGAAAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080616 11 + 4244037 GTGTGAGAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108467 11 + 4569836 GTGTGAGAGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072679 11 - 159171411 ATGTGAGAGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792990 11 + 3513951 ATGTGAGAGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841887 11 + 1920343 ATGTGACAGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956701 11 - 7032639 ATGTGAGAGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882420 11 - 65901067 GTGTAAGAGAA i micMur3.chr16 I 47 C 0 s proCoq1.NW_012135969v1 2969189 11 + 8555354 GTGTAAGAGAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777541 11 + 28711273 GTATAGGAGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047540 11 - 122082543 GTGTGAGAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21388650 11 + 61074082 GTGTGAGAGAa i canFam3.chr9 C 0 I 47 e dasNov3.JH570468 361160 5470 - 852752 T a score=549638.000000 s hg38.chr17_GL383564v2_alt 56580 86 + 133151 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTCTGCC s panTro5.chr17 16250473 86 + 83181570 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTGTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157957 83 + 83442489 TGAAAAGAAGAGGCTCC----AA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTGTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992968 86 + 4267968 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAGTCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTCTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973374 86 - 2193130 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTCTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s colAng1.NW_012122154v1 2108478 86 + 4569836 TGAAAAGAAGAGGCTCC-AAGAA-AGAGGGACCACTCAGTCAAAGCCTTGAAAACCCAACTATTCTGTTGATATAAATTTTGTCTGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072690 87 - 159171411 TGAAAAGAAGAGGCTCCAAAGAA-GGGGGCAGCACTCAGTCAAAGCCTTGAAAACCCAAGTGTTGCGCTGACATAAATTGTGTCTGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1793001 87 + 3513951 TGAAAAGAAGAGGCTCCAAAGAA-GGGGGCAGCACTCGATCAAAGCCTTGAAAACCCAAATGTTCTGTTGACATAAGTTTTGTCTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841898 87 + 1920343 TGAAAAGAAGAGGCTCCAAAGAA-GGGGGCAGCACTCGATGAAAGCCTTGAAAACCCAAATGTTCTGTTGACATAAATTTTGTCTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956712 88 - 7032639 TGAAAAGAAGAGGCTCCAAAGAAGGGGGGCAGCACTCGATCAAAGCCTTGAAAACCCAAATGTTCTGTTGACATAAATCTTGTCTGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882431 86 - 65901067 TGGTAAGAAGAGGCTCC-AAGAA-GGAGGTAGCACTCGCACAGGGCTTTGAAAACCCAAGTGTTCTGTTCATGCAAACTTTATCTGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2969200 86 + 8555354 TGGTAAGAAGAGGCTCC-AAGAA-GGAGATAGCGCCTGCACAGGGCTTTGGAAACCCAAGTGTTCTGTTCGTGTAAATTTTGTCTGCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777552 85 + 28711273 TGAAGAGAAGAGGCTCC-AAGAA-GGAGGTAGCATTCATATAGGGCTTT-AAAACACAAATGTTCTCTTCATGAACATTTTGTCTGCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047551 80 - 122082543 TGGTAAGAAAAGACTTG-GAGAA-CAAGATAGCATGTGATAAGTACTTTGGAAA------TGTGTTCATTACATAGAGTTCATCTGCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21388708 85 + 61074082 TGGTAAGAAAAGGCTTT--ATGA-GGAGGTAGCCCTCATTCAGGGCTTTGAAAACCTAAACATTCCATTCATATACATATTGTCTGCC i canFam3.chr9 I 47 C 0 e dasNov3.JH570468 361160 5470 - 852752 T e macNem1.NW_012014910v1 2014327 0 + 10377808 C e manLeu1.NW_012106252v1 2080627 0 + 4244037 C e chlSab2.chr16 64857189 0 + 75148670 C e cerAty1.NW_012006043v1 1901443 0 - 8458610 C e rheMac8.chr16 30045476 0 - 77216781 C e macFas5.chr16 27958085 0 - 80997621 C a score=4053301.000000 s hg38.chr17_GL383564v2_alt 56666 266 + 133151 TGTCTTGTTGACTGCAGGCCCTTCAGCAGAGGCAATATCATCACCTAATTAAAGACGA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTTTAGGCCATAGAAGAGGGAAAGTT s panTro5.chr17 16250559 266 + 83181570 TGTCTTGTTGACTGCAGGCCCTTCAGTAGAGGCAATATCATCACTTAATTAAAGACAA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTGTAGGCCATAGAAGAGGGAAAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158040 266 + 83442489 TGTCTTGTTGACTGCAGGCCCTTCAGTAGAGGCAATATCATCACTTAATTAAAGACAA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTGATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTGTAGGCCATAGAAGAGGGAAAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993054 265 + 4267968 TGTCTTGTTGACTGCAGGCCCTTCAGCAGAGGCAATATCATCACCTAATTAAAGACGA-TATAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATG-GGAGGTTATTAAAACTTTATATACTTCGCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973460 266 - 2193130 TATCTTGTTGACTACAGGACCTCCAGCAGAGGAAATATCATCACGTAATTAAAGCTGA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTGAGGTGAGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045476 263 - 77216781 TGTCTTGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCACG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958085 263 - 80997621 TGTCTTGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014327 263 + 10377808 TGTCTTGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901443 263 - 8458610 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857189 263 + 75148670 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080627 263 + 4244037 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCATAGAAGAGGGAAAGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108564 263 + 4569836 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCACG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGATGAGTATGTGTAGGCCATAGAAGAGGGAAAGTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072777 261 - 159171411 TGTCTTATTGACTGCAGGCCCTTCGGCAGAGACAATAGCATCGCCTAATTAAATCTTA-CGTAACCTGTGGAATACTGGAAGTGGAATAAATAAGGAAGGGTAACACTAATGAAAATTCAAGAGAAGGTTATT-AAACTTTATATACTTCCCACAGTTTCAACTTCAGTCAATGATTACTGTATGATATTAGCATAATTCTG----AAAGTTTGCTGGGAAATGTCTGGAAAGATGATGGTGTGTAGGCCACAGGCGAGAGAAAGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1793088 266 + 3513951 TGTCTTATTGACTGCAGGACCTTCAGCAGAGACAATATCATCACCTAATTAAATCTTA-TGTAAACCATGGAATACTGGAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACATCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGAAAGATGAGGGTGTGTAGGCCATAGGAGAGAGAAAGTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841985 263 + 1920343 TGTCTTATTGACTGCAGGCCCTTTAGCAGAGAC---ATCATCACCTAATTAAATCTTA-TGTAAACCATGGAATACTGGAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCACGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGAGAAATGTCTGGAAAGATGAGGGTGTGTAGGCCATAGGAGAGAGAAAGTT i cebCap1.NW_016107730v1 C 0 T 8202 s aotNan1.NW_018502359v1 6956800 266 - 7032639 TGTCTTATTGACTACAGGCCCTTCAGCAGAGACAATATCATCACCCAATTAAATCTTA-TGTAAACCATGGAATGCTGGAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCACGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGAAAGATGAGGGTGTGTAGGCCATAGGAGAGAGAAAGTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882517 267 - 65901067 TGTCAGGTTGACTGCAGGGCCTTCAACAGAGACAATATCACCACCTAATTAGAGCCTAGTGTGTACCATGGAATACTGGCAGTGGAATAAGTAAGGAAGAATGTCACTAATGAGAATTCATGGGAAGGTTATTAAAACTTTATATACTTCCCACAGTTTCAACTTCAATCAGCTATTACTCTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGAGATGCATTTGCACAGATGAGTGTGTGTAGGCCTGAGAAGAGGGAAAGTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2969286 266 + 8555354 TGTC-GACTGACTGCAAACCCTTCAACAGAGACGATATCACCACCTAATTGGAGCCTAGTGTGCACGATGGAATACTGTCAGTGGAATAAATAAGGAAGAGTAACACTAATGAGAATTCATGGGAAGGTTATTAAAACTTTATATACTTCCCACAGTTTCAACTTCAATCAACTCTTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGAGATACGTTTGGACAGATGAGTACGTGTAGGACTGAGAAGAGGGAAAGTT i proCoq1.NW_012135969v1 C 0 T 5726 s otoGar3.GL873537 22777637 261 + 28711273 TGCT-GGTGGACTGCGGGCCTTTCAACACAGACAATATCATCACCTCTTTAAAGCCTAGTGTAAACCATGGAATATGCTAAGTAGAATAAATAAAGAAGAGTAACACTAATGAGAATTCATGGAAAGGTTATTAAAAGTTTATATACTTCCCATGGTTTCAACTTCAATCAACTATTACTGTATGATATTAGCATAATTCTCAAATAAATTTTGCTGAGATAGATTTGGACAGATGAGCATGTGTAGACCT-----GAGGGAGAGTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047631 267 - 122082543 TGTCCTGTTGACTGCAGGACCTTCAACTGCGAAAGAATCACCTTCCAATCAAAGCAGAATGCAAACCAAGGCATTCTGGGAGTGGAATGAGTAAGGAAGAGTAACACTAGTGAGGATTCACGATAAGGTTATTAAAACCTTATGCACCTCCCACAGTTCTGACTTCAATCAACTCTTGCTATATGATATTAGCATAATTCTGAAATAAAATTTGATGGCACATGCTTGGACAGATGAGAGTGTGTAGGTTCAAGAAGAGGGAAAGTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21388793 230 + 61074082 ----------------TATCCTTCAAGAGAGATTGTATCTTTATCCAATTAAAGCCTAGTGTAAACCATAGAATACAGTAAGTGGAATA---AAGGAACAGTAATGCTAATAAGTATTCATG---AGGTTATTAAAACTT---------------GTTCCAACTTCAATCAATGATTACTACATGATATTAGCATAATTCTGAAATAAAGTTTGATGAGCTGTGTTTAGACAGATGAATGTGTGCAGGTCTGACAAGAGGGAAAGTT i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 5470 - 852752 T a score=15561.000000 s hg38.chr17_GL383564v2_alt 56932 1 + 133151 T s panTro5.chr17 16250825 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158306 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993319 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973726 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045739 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958348 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014590 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901706 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857452 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080890 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108827 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46073038 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1793354 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6957066 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882784 1 - 65901067 T i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22777898 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047898 1 - 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 21389023 1 + 61074082 T i canFam3.chr9 C 0 T 12197 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e dasNov3.JH570468 361160 5470 - 852752 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T a score=13923.000000 s hg38.chr17_GL383564v2_alt 56933 1 + 133151 T s panTro5.chr17 16250826 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158307 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993320 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973727 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045740 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958349 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014591 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901707 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857453 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080891 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108828 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46073039 1 - 159171411 T i calJac3.chr5 C 0 T 10425 s saiBol1.JH378271 1793355 1 + 3513951 T i saiBol1.JH378271 C 0 T 8298 s aotNan1.NW_018502359v1 6957067 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 T 9919 s micMur3.chr16 35882785 1 - 65901067 T i micMur3.chr16 C 0 T 5773 s otoGar3.GL873537 22777899 1 + 28711273 T i otoGar3.GL873537 C 0 T 5819 s mm10.chr11 22047899 1 - 122082543 T i mm10.chr11 C 0 T 7521 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T a score=1325799.000000 s hg38.chr17_GL383564v2_alt 56934 240 + 133151 ggccaggtgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctgtactgaaaatac-----------------aaaaa-aaaaaaaaaaaa---------ttagccaggcatggtggcacacacctgtagtcccagctactcaggaggctgaggcaggggaatagcttgaacccaggaggcggaggttgcagtgagc s panTro5.chr17 16250827 243 + 83181570 ggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctgtactgaaaatac--------------aaaaaaaa-aaaaaaaaaaaa---------ttagccaggcatattggcacacacctgtagtcccagctactcaggaggctgaggcaggggaatagcttgaacccaagaggcggaggttgcagtgagc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158308 235 + 83442489 ggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctgtactgaaaatac-----------------------aaaaaaaaaaat---------taagccaggcatattggcacacacctgtagtcccagctactcaggaggctgaggcaggggaatagcttgaacccaagaggcggaggttgcagtgagc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993321 257 + 4267968 ggccaggggcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacacggcgaaaccccgtctgtactgaaaatacaaaaaaaaaaaaaaaaaaaaaa-aaaaaaaaaaaa---------ttagccaggcatggtggcacacacctgtagtcccagctactcaggaggctgaggcaggggaatagcttgaacccaggaggcggaggttgcagtgagc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973728 233 - 2193130 ggccaggtgcggtggctcacgcctataatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactgaaaatac-------------------------aaaaaaaaaa---------ttagccaggcatggtggcacacacctgtagtcccagctactcaggaggctgaggcaggggaatagcttgaaccccggaggcggaggttgcagtgagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045741 245 - 77216781 ggccaggcacagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctagtaaaaatac------------aaaaaaaaag-aaaaaaaaaaaa---------ttagccaggcgtggtggcacgcacctgtagtcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958350 245 - 80997621 ggccaggcacagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctagtaaaaatac------------aaaaaaaaaa-agaaaaaaaaaa---------ttagccaggcgtggtggcacgcacctgtagtcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014592 246 + 10377808 ggccaggcacagtggctcatacctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcagaagatcaagaccatcctggctaacacggtgaaaccccatctctagtaaaaatac------------aaaaaaaaaagaaaaaaaaaaaa---------ttagccaggcgtggtggcacgcacctgtagtcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901708 242 - 8458610 ggccaggcacagtggctcacacctgtaatcccaacactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccctctctagtaaaaatac------------aaaaaaaaat----aaaaaaaaa---------ttagccaggcgtggtggcacgcacctgtagtcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857454 254 + 75148670 ggccaggcacagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcatgaggtcaggagatcaagatcatcctggctaacacggtgaaaccccatctctagtaaaaatac------------aaaaaaaaaa-aaaaaaaaaaaaaaaaaaaattaagccaggcgtggtggcacgtacctgtagtcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080892 245 + 4244037 ggccaggcacagtggctcacacctgtaatcccaacactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccctctctagtaaaaatac------------aaaaaaaaag-aaaaaaaaaaaa---------ttagccaggcgtggtggcacgcacctgtagtcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108829 238 + 4569836 ggccaggcacagtggctcacacttgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagattgagaccatcctggctaatatggtgaaaccccatttctagtaaaaatac------------aaaaaaaaaa--------aaaaa---------ttagccaggcatggtgggacgcacctgtaatcccagctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagc i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e calJac3.chr5 46073040 10425 - 159171411 T a score=325379.000000 s hg38.chr17_GL383564v2_alt 57174 55 + 133151 caagatcgtgccactgcactccagcctggatgatagagtgagactctgtctcaaa s panTro5.chr17 16251070 55 + 83181570 caagatcgtgccactgcactccagcctggatgatagagtgagactttgtctcaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158543 55 + 83442489 caagatcgtgccactgcactccagcctggatgatagagtgagactttgtctcaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993578 55 + 4267968 caagatcgtgccactgcactccagcctggatgatagagtgagactctgtctcaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973961 55 - 2193130 caagatcgtgccattgcactccagcctgggtgatagagtgagactccatctcaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045986 55 - 77216781 caagatcgcgccactacactccagcctgggtgatagagtgagactccatcttaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958595 55 - 80997621 caagatcgcgccactacactccagcctgggtgatagagtgagactccgtcttaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014838 55 + 10377808 caagatcgcgccactacactccagcctgggtgatagagtgagactccgtcttaaa i macNem1.NW_012014910v1 C 0 T 6749 s cerAty1.NW_012006043v1 1901950 55 - 8458610 caagatcgcgccactacactccagcctgggtgatagagtgagactccgtcttaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857708 55 + 75148670 gaagatcgcgccactacactccagcctgggtgatagagtgagactccgtcttaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081137 55 + 4244037 caagatcgcgccactacactccagcctgggtgatagagtgagactccgtcttaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109067 55 + 4569836 caagaacgtgccactacactccagcctgggtgatagagtgagactctgtctcaaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062615 40 - 159171411 caaga---------------ccagcttggccaatatgatgaaaccccatctctac i calJac3.chr5 T 10425 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T a score=11957.000000 s hg38.chr17_GL383564v2_alt 57229 3 + 133151 -aaa s panTro5.chr17 16251125 3 + 83181570 -aaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158598 3 + 83442489 -aaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993633 3 + 4267968 -aaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974016 3 - 2193130 -aaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046041 3 - 77216781 -aaa i rheMac8.chr16 C 0 T 6749 s macFas5.chr16 27958650 3 - 80997621 -aaa i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1902005 3 - 8458610 -aaa i cerAty1.NW_012006043v1 C 0 T 6749 s chlSab2.chr16 64857763 3 + 75148670 -aaa i chlSab2.chr16 C 0 T 6767 s manLeu1.NW_012106252v1 2081192 3 + 4244037 -aaa i manLeu1.NW_012106252v1 C 0 T 6756 s colAng1.NW_012122154v1 2109122 3 + 4569836 -aaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062655 3 - 159171411 taa- i calJac3.chr5 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e macNem1.NW_012014910v1 2014893 6749 + 10377808 T a score=5567.000000 s hg38.chr17_GL383564v2_alt 57232 3 + 133151 aaa s panTro5.chr17 16251128 3 + 83181570 aaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158601 3 + 83442489 aaa i panPan2.chr17 C 0 T 7293 s gorGor5.CYUI01015385v1 3993636 3 + 4267968 aaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974019 3 - 2193130 aaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27958653 3 - 80997621 caa i macFas5.chr16 C 0 C 0 s colAng1.NW_012122154v1 2109125 2 + 4569836 -aa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062658 3 - 159171411 aaa i calJac3.chr5 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e macNem1.NW_012014910v1 2014893 6749 + 10377808 T e manLeu1.NW_012106252v1 2081195 6756 + 4244037 T e chlSab2.chr16 64857766 6767 + 75148670 T e cerAty1.NW_012006043v1 1902008 6749 - 8458610 T e rheMac8.chr16 30046044 6749 - 77216781 T a score=1113.000000 s hg38.chr17_GL383564v2_alt 57235 1 + 133151 a s panTro5.chr17 16251131 1 + 83181570 a i panTro5.chr17 C 0 T 7307 s panPan2.chr17 16151311 1 + 83442489 a i panPan2.chr17 T 7293 C 0 s gorGor5.CYUI01015385v1 3993639 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974022 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 T 7302 s macFas5.chr16 27958656 1 - 80997621 c i macFas5.chr16 C 0 C 0 s colAng1.NW_012122154v1 2109127 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062661 1 - 159171411 a i calJac3.chr5 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e macNem1.NW_012014910v1 2014893 6749 + 10377808 T e manLeu1.NW_012106252v1 2081195 6756 + 4244037 T e chlSab2.chr16 64857766 6767 + 75148670 T e cerAty1.NW_012006043v1 1902008 6749 - 8458610 T e rheMac8.chr16 30046044 6749 - 77216781 T a score=1911.000000 s hg38.chr17_GL383564v2_alt 57236 1 + 133151 a s panTro5.chr17 16243825 1 + 83181570 a i panTro5.chr17 T 7307 C 0 s gorGor5.CYUI01015385v1 3993640 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 T 7305 s nomLeu3.chrUn_GL397460_1 1966721 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 T 7302 C 0 s macFas5.chr16 27958657 1 - 80997621 a i macFas5.chr16 C 0 C 0 s colAng1.NW_012122154v1 2109128 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062662 1 - 159171411 a i calJac3.chr5 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e macNem1.NW_012014910v1 2014893 6749 + 10377808 T e manLeu1.NW_012106252v1 2081195 6756 + 4244037 T e chlSab2.chr16 64857766 6767 + 75148670 T e cerAty1.NW_012006043v1 1902008 6749 - 8458610 T e rheMac8.chr16 30046044 6749 - 77216781 T e panPan2.chr17 16151312 0 + 83442489 C a score=-1395.000000 s hg38.chr17_GL383564v2_alt 57237 1 + 133151 -a s panTro5.chr17 16243826 1 + 83181570 -a i panTro5.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966722 1 - 2193130 -a i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27958658 1 - 80997621 -a i macFas5.chr16 C 0 T 6758 s manLeu1.NW_012106252v1 2074439 1 + 4244037 -a i manLeu1.NW_012106252v1 T 6756 C 0 s colAng1.NW_012122154v1 2109129 1 + 4569836 -a i colAng1.NW_012122154v1 C 0 I 1 s calJac3.chr5 46062663 1 - 159171411 c- i calJac3.chr5 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e macNem1.NW_012014910v1 2014893 6749 + 10377808 T e chlSab2.chr16 64857766 6767 + 75148670 T e cerAty1.NW_012006043v1 1902008 6749 - 8458610 T e rheMac8.chr16 30046044 6749 - 77216781 T e gorGor5.CYUI01015385v1 3993641 7305 + 4267968 T e panPan2.chr17 16151312 0 + 83442489 C a score=910.000000 s hg38.chr17_GL383564v2_alt 57238 1 + 133151 a s panTro5.chr17 16243827 1 + 83181570 a i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151312 1 + 83442489 a i panPan2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966723 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 I 4 s colAng1.NW_012122154v1 2109131 1 + 4569836 a i colAng1.NW_012122154v1 I 1 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e calJac3.chr5 46062664 0 - 159171411 C e macNem1.NW_012014910v1 2014893 6749 + 10377808 T e manLeu1.NW_012106252v1 2074440 0 + 4244037 C e chlSab2.chr16 64857766 6767 + 75148670 T e cerAty1.NW_012006043v1 1902008 6749 - 8458610 T e rheMac8.chr16 30046044 6749 - 77216781 T e macFas5.chr16 27958659 6758 - 80997621 T e gorGor5.CYUI01015385v1 3993641 7305 + 4267968 T a score=10021.000000 s hg38.chr17_GL383564v2_alt 57239 3 + 133151 ca---g s panTro5.chr17 16243828 3 + 83181570 ca---g i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151313 3 + 83442489 ca---g i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986336 3 + 4267968 ca---g i gorGor5.CYUI01015385v1 T 7305 C 0 s nomLeu3.chrUn_GL397460_1 1966728 6 - 2193130 caaaca i nomLeu3.chrUn_GL397460_1 I 4 C 0 s rheMac8.chr16 30039295 3 - 77216781 ca---g i rheMac8.chr16 T 6749 C 0 s macFas5.chr16 27951901 3 - 80997621 ca---g i macFas5.chr16 T 6758 C 0 s macNem1.NW_012014910v1 2008144 3 + 10377808 ca---g i macNem1.NW_012014910v1 T 6749 C 0 s cerAty1.NW_012006043v1 1895259 3 - 8458610 ca---g i cerAty1.NW_012006043v1 T 6749 C 0 s chlSab2.chr16 64850999 3 + 75148670 ca---g i chlSab2.chr16 T 6767 C 0 s manLeu1.NW_012106252v1 2074440 3 + 4244037 ca---g i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109132 3 + 4569836 aa---g i colAng1.NW_012122154v1 C 0 T 6823 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e calJac3.chr5 46062664 0 - 159171411 C a score=77395.000000 s hg38.chr17_GL383564v2_alt 57242 14 + 133151 aaaacaaacaaaCA s panTro5.chr17 16243831 14 + 83181570 aaaacaaacaaaca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151316 14 + 83442489 aaaacaaacaaaca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986339 14 + 4267968 aaaacaaacaaaca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966734 14 - 2193130 aaaaTAAACAAACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039298 12 - 77216781 aaa--aaacaaaca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951904 14 - 80997621 aaaacaaacaaaca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008147 14 + 10377808 aaaacaaacaaaca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895262 14 - 8458610 aaaacaaacaaaca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851002 14 + 75148670 aaaacaaacaaaca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074443 14 + 4244037 aaaacaaacaaaca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102312 14 + 4569836 aaaacaaacaaaca i colAng1.NW_012122154v1 T 6823 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 361160 5470 - 852752 T e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22777900 5819 + 28711273 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T e calJac3.chr5 46062664 0 - 159171411 C a score=58389.000000 s hg38.chr17_GL383564v2_alt 57256 7 + 133151 aaaactt s panTro5.chr17 16243845 7 + 83181570 aaaactt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151330 7 + 83442489 aaaactt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986353 7 + 4267968 aaaactt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966748 7 - 2193130 AAACCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039310 7 - 77216781 aaaactt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951918 7 - 80997621 aaaactt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008161 7 + 10377808 aaaactt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895276 7 - 8458610 aaaactt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851016 7 + 75148670 aaaactt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074457 7 + 4244037 aaaactt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102326 7 + 4569836 aaaactt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062664 3 - 159171411 ----ctt i calJac3.chr5 C 0 I 1 s otoGar3.GL873537 22772081 7 + 28711273 aaaactt i otoGar3.GL873537 T 5819 C 0 s dasNov3.JH570468 355690 7 - 852752 aaaactt i dasNov3.JH570468 T 5470 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T e saiBol1.JH378271 1793356 8298 + 3513951 T a score=7161.000000 s hg38.chr17_GL383564v2_alt 57263 2 + 133151 ta s panTro5.chr17 16243852 2 + 83181570 ta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151337 2 + 83442489 ta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986360 2 + 4267968 ta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966755 2 - 2193130 TA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039317 2 - 77216781 ta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951925 2 - 80997621 ta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008168 2 + 10377808 ta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895283 2 - 8458610 ta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851023 2 + 75148670 ta i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074464 2 + 4244037 ta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102333 2 + 4569836 ta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062668 1 - 159171411 t- i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1785058 1 + 3513951 t- i saiBol1.JH378271 T 8298 C 0 s otoGar3.GL873537 22772088 2 + 28711273 ta i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 355697 2 - 852752 ta i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T e aotNan1.NW_018502359v1 6957068 9919 - 7032639 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T a score=525016.000000 s hg38.chr17_GL383564v2_alt 57265 57 + 133151 tttacaaaaattcagcagggtaaacttgacgtgtgggctgccatttgcagatgccct s panTro5.chr17 16243854 57 + 83181570 tttacaaaaattcagcagggtaaacttgacgtgtgggctgccgtttgcagatgccct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151339 57 + 83442489 tttacaaaaattcagcagggtaaacttgacgtgtgggctgccgtttgcagatgccct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986362 57 + 4267968 tttacaaaaattcagcagggtaaacttgacgtgtgggctgccgtttgcagatgccct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966757 57 - 2193130 TTTACAAAAATTCAGCAGGGTAAACTTGACGTGTGGACTGCCGTTTGCAGATGCCGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039319 57 - 77216781 tttacaaaaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgcccc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951927 57 - 80997621 tttacaaaaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgcccc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008170 57 + 10377808 tttacaaaaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgcccc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895285 57 - 8458610 tttacaaaaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgcccc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851025 57 + 75148670 tttacaaaaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgcccc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074466 57 + 4244037 tttacaaaaatgcagcagggtaaacttgacctgtgggctgccgtttgcagatgcccc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102335 57 + 4569836 tttacaaaaatgcagcagggtaaacttgacctgtgggctgctgtttgcagatgcccc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062669 55 - 159171411 tttacaaaaatgcagca-ggtgaacttgatctgtgggctgttgtttgcagaggccc- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785059 56 + 3513951 tttacaaaaatgcaGCAGGGTGAACTTGACCTGTGGGCTGTTGTTTGCAGATGCCC- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6947149 56 - 7032639 tttacaaaaatgcagcagggtgaacttgacctgtgggctgttgtttgcagatgccc- i aotNan1.NW_018502359v1 T 9919 C 0 s otoGar3.GL873537 22772090 56 + 28711273 tttgtaagaatgcagta-gccacacatggcctgtgggccatagttttccaatctcCC i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 355699 47 - 852752 tttacaaaaccagag--------atcctgcctgtggtccacagtttgccaatccT-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T e cebCap1.NW_016107730v1 1842248 8202 + 1920343 T a score=102354.000000 s hg38.chr17_GL383564v2_alt 57322 9 + 133151 CTTTTAGGT s panTro5.chr17 16243911 9 + 83181570 CTTTTAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151396 9 + 83442489 CTTTTAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986419 9 + 4267968 CTTTTAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966814 9 - 2193130 CTTTTAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039376 9 - 77216781 ctTTTAGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27951984 9 - 80997621 ctTTTAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008227 9 + 10377808 ctTTTAGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895342 9 - 8458610 ctTTTAGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851082 9 + 75148670 ctTTTAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074523 9 + 4244037 ctTTTAGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102392 9 + 4569836 ctTTTAGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062724 9 - 159171411 ctTTTAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785115 9 + 3513951 CTTTTAGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834046 9 + 1920343 ctTTTAGGC i cebCap1.NW_016107730v1 T 8202 C 0 s aotNan1.NW_018502359v1 6947205 9 - 7032639 ctTACAGGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772146 9 + 28711273 CCTTTAGTG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 355746 9 - 852752 CTTTTAGTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22047900 7521 - 122082543 T e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T a score=1567409.000000 s hg38.chr17_GL383564v2_alt 57331 129 + 133151 ATACTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACGAATAGT----------AAGGCTCAGGATC s panTro5.chr17 16243920 129 + 83181570 ATATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151405 129 + 83442489 ATATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAGTAGT----------AAGGCTCAGGATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986428 129 + 4267968 ATATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTTGCTCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966823 130 - 2193130 ATATTCCCATCCATTCCATTGGTTTCCATTTTACTTTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTCTCTCCATGTGTTGGCAAGTTCCCTAAACCTCAACCAATAGT----------AAGGCTCAGGATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039385 129 - 77216781 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i rheMac8.chr16 C 0 I 1 s macFas5.chr16 27951993 129 - 80997621 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 2008236 129 + 10377808 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAAGATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1895351 129 - 8458610 ATATTCCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAATATGCCGTTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64851091 129 + 75148670 ATATTCCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCGTTGTTTTCAGTCTCTCCACGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2074532 129 + 4244037 ATATTTCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2102401 129 + 4569836 ATATTCCCATCCATTCAGTTGGTTTCCATTTTAC-TTTCTCATTTCTCAACCATGAACATGCCATTGTTTTCAGTCTCTCCATGTGCTGGCAAGTTCCCTAAACCCCAACCAATAGT----------AAGGCTCAGGATC i colAng1.NW_012122154v1 C 0 I 1 s calJac3.chr5 46062733 120 - 159171411 ATATTTCCATCCATTCCATTGGTTTCCATTTTAC-TTT---------CAACCATGAACATGCAATTGTTTTTAATCTCGCCATGTGTTGGCAAGTTCCCTAAACCCCAACCAACAGT----------AAGGTTCAGGATC i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1785124 128 + 3513951 ATATTCCCATCCATTCCGTTGGTTTCCATTTTAC-TTTCTCATTTCCCAACCAAGAACGTGCAATTGTTTTCAATCTCTCCACATGTTGGCAAGTTCCCTAAACCCCAACCAACAGT----------AAGA-TCAGGATC i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1834055 129 + 1920343 GTATTCCCATCCATTCCATTGGTTTCCATTTTAC-TTTCTCATTTCCCGACCATGAACATGCAATTGTTTTCAATCTCTCCACGTGTTGGCAAGTTCCCTAAACCCCACCCAATAGT----------AAGGCTCAGGATC i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6947214 129 - 7032639 GTATTCCCATCCATTCCGTTGGTTTCCATTTTAC-TTTCTCATTTCCCAACCATGAACATGCAATTGTTTTCAATCTCTCCACGTGTTGGCAAGTTCCCTAAAACCCAACCAATAGT----------AAGGCTCAGGATC i aotNan1.NW_018502359v1 C 0 I 1 s otoGar3.GL873537 22772155 129 + 28711273 CTCTTCCCACTCATCCACTGAGTTTCCATTTTGC-TTTTTCACTTCCCAAAAATGAACATACAATTATTTTCAATTTCTCTACATGTTGCCAAATTCCCTAAACTCCAACCAATAGT----------AATGTTCAGTATC i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22040379 124 - 122082543 atccatccatccatccatccaGATTTCATTTCTC-ATT-TCATTTCTTAAGCACCAACATACAACTGTTTCTAGTCTGTCTATCTG----CACACTTCCCAAGGTGCAGCCAGTACC----------AAGTATCAGCCTG i mm10.chr11 T 7521 I 1 s dasNov3.JH570468 355755 135 - 852752 CTATTCTCACCCA----GTTGGTTTCCATCTCAC-TTTCTTATTTCTCAGTCACAAAAACGCCATTATTTCCAATCCTCCCATGTATCAGCAAATTCTCTAAATCCTAGTCAATATTCCCACTGAGAAAAGCTCAGAATC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T a score=546.000000 s hg38.chr17_GL383564v2_alt 57460 1 + 133151 A s panTro5.chr17 16244049 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151534 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986557 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 e mm10.chr11 22040503 1 - 122082543 I e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 355890 0 - 852752 C e canFam3.chr9 21389024 12197 + 61074082 T e otoGar3.GL873537 22772284 1 + 28711273 I e aotNan1.NW_018502359v1 6947343 1 - 7032639 I e cebCap1.NW_016107730v1 1834184 1 + 1920343 I e saiBol1.JH378271 1785252 1 + 3513951 I e calJac3.chr5 46062853 1 - 159171411 I e macNem1.NW_012014910v1 2008365 1 + 10377808 I e colAng1.NW_012122154v1 2102530 1 + 4569836 I e manLeu1.NW_012106252v1 2074661 1 + 4244037 I e chlSab2.chr16 64851220 1 + 75148670 I e cerAty1.NW_012006043v1 1895480 1 - 8458610 I e rheMac8.chr16 30039514 1 - 77216781 I e macFas5.chr16 27952122 1 - 80997621 I e nomLeu3.chrUn_GL397460_1 1966953 0 - 2193130 C a score=589205.000000 s hg38.chr17_GL383564v2_alt 57461 54 + 133151 TTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC s panTro5.chr17 16244050 54 + 83181570 TTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151535 54 + 83442489 TTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986558 54 + 4267968 TTTCGGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1966953 54 - 2193130 CTTCAGCGAATACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039515 54 - 77216781 TTTCAGCGAACACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i rheMac8.chr16 I 1 C 0 s macFas5.chr16 27952123 54 - 80997621 TTTCAGCGAACACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2008366 54 + 10377808 TTTCAGGGAACACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1895481 54 - 8458610 TTTCAGCGAACACAGGTTG--AGTTTCTGCTGTA----------AAAACAAAT-----TGAATGCTGAAAC i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64851221 54 + 75148670 TTTCAGTGAACACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2074662 54 + 4244037 TTTCAGCGAACACAGGTTG--AGTTTCTGCTATA----------AAAACAAAT-----TGAATGCTGAAAC i manLeu1.NW_012106252v1 I 1 I 1 s colAng1.NW_012122154v1 2102531 54 + 4569836 TTTCAGCGAATACAAGTTG--AGTTTCTTCTATA----------AAAACAAAT-----TGAATGCTGAAAC i colAng1.NW_012122154v1 I 1 C 0 s calJac3.chr5 46062854 64 - 159171411 TTTCAGCTAATACAGGTTG--AGAATGCAATAAAAAACAAAAACAAAAAAAAT-----TGAATACTGAGAC i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1785253 54 + 3513951 TTTCAGCTAATACAGGTTG--AGTTTCTGCTATA----------AAAGCAAGT-----TGAATACTGAGAC i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1834185 54 + 1920343 TTTCAGCTAATACAGGTTG--AGTTTCTGCTACA----------AAAACAAGT-----TGAATACTGAGAC i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6947344 54 - 7032639 TTTCAGCTAATACAGGTTG--AGTTTCTGCTATA----------AAAACAAGT-----TGAATACTGAGAC i aotNan1.NW_018502359v1 I 1 C 0 s otoGar3.GL873537 22772285 59 + 28711273 TGGCTGCTAAAAGAGGATG--AGTCTCTGGTATA----------AAGACCAATTGAACTGAATGTTGAAAC i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22040504 60 - 122082543 TTGCAACTCATCCAGAGTGGTAGTATCCTCTGTA----------AGAAAGGTT-TCCCTGGATGCTGAGAT i mm10.chr11 I 1 C 0 s dasNov3.JH570468 355890 59 - 852752 CTCATACTAATACAGGACA--ATTTTCTCCTGTA----------AGGACAAGTTAATCTCAACACTGAAAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T a score=11849.000000 s hg38.chr17_GL383564v2_alt 57515 1 + 133151 A s panTro5.chr17 16244104 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151589 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986612 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967007 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039569 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952177 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008420 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895535 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851275 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2102585 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062918 1 - 159171411 A i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1785307 1 + 3513951 A i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1834239 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6947398 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 I 1 s otoGar3.GL873537 22772344 1 + 28711273 A i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22040564 1 - 122082543 G i mm10.chr11 C 0 I 1 s dasNov3.JH570468 355949 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T e manLeu1.NW_012106252v1 2074716 1 + 4244037 I a score=-21750.000000 s hg38.chr17_GL383564v2_alt 57516 3 + 133151 -TG-G s panTro5.chr17 16244105 3 + 83181570 -TG-G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151590 3 + 83442489 -TG-G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986613 3 + 4267968 -TG-G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967008 3 - 2193130 -TG-G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039570 2 - 77216781 -TG-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952178 2 - 80997621 -TG-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008421 2 + 10377808 -TG-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895536 2 - 8458610 -TG-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851276 2 + 75148670 -TG-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074717 2 + 4244037 -TG-- i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2102586 3 + 4569836 -TGG- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062920 2 - 159171411 -GG-- i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1785309 2 + 3513951 -GG-- i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1834241 2 + 1920343 -GG-- i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6947400 2 - 7032639 -GG-- i aotNan1.NW_018502359v1 I 1 C 0 s otoGar3.GL873537 22772346 2 + 28711273 -GG-- i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22040566 2 - 122082543 -GG-- i mm10.chr11 I 1 C 0 s dasNov3.JH570468 355950 3 - 852752 TGG-- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T a score=10028.000000 s hg38.chr17_GL383564v2_alt 57519 1 + 133151 A s panTro5.chr17 16244108 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151593 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986616 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967011 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039572 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952180 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008423 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895538 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851278 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074719 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46062922 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785311 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834243 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947402 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772348 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040568 1 - 122082543 G i mm10.chr11 C 0 C 0 s dasNov3.JH570468 355953 1 - 852752 G i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T e colAng1.NW_012122154v1 2102589 0 + 4569836 C a score=103520.000000 s hg38.chr17_GL383564v2_alt 57520 9 + 133151 TGAATGTGG s panTro5.chr17 16244109 9 + 83181570 TGAATGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151594 9 + 83442489 TGAATGTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986617 9 + 4267968 TGAATGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967012 9 - 2193130 TGAATGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039573 9 - 77216781 TGAATGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952181 9 - 80997621 TGAATGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008424 9 + 10377808 TGAATGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895539 9 - 8458610 TGAATGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851279 9 + 75148670 TGAATGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074720 9 + 4244037 TGAATGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102589 9 + 4569836 TGAATGTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062923 9 - 159171411 TGAACGTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785312 9 + 3513951 AGAACGTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834244 9 + 1920343 TGAACATGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947403 9 - 7032639 TGAACGTGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772349 9 + 28711273 TAGACTTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040569 9 - 122082543 TAGATTTGA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 355954 9 - 852752 TAGACAGGG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T a score=11099.000000 s hg38.chr17_GL383564v2_alt 57529 1 + 133151 G s panTro5.chr17 16244118 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151603 1 + 83442489 G i panPan2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967021 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039582 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952190 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008433 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895548 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851288 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074729 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102598 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062932 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785321 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834253 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947412 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772358 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040578 1 - 122082543 G i mm10.chr11 C 0 C 0 s dasNov3.JH570468 355963 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T e gorGor5.CYUI01015385v1 3986626 0 + 4267968 C a score=15561.000000 s hg38.chr17_GL383564v2_alt 57530 1 + 133151 A s panTro5.chr17 16244119 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151604 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986626 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967022 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039583 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952191 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008434 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895549 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851289 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074730 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102599 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062933 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785322 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834254 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947413 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772359 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040579 1 - 122082543 A i mm10.chr11 C 0 C 0 s dasNov3.JH570468 355964 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e canFam3.chr9 21389024 12197 + 61074082 T a score=359290.000000 s hg38.chr17_GL383564v2_alt 57531 32 + 133151 GGAAAGAGCTACTTGGAAGAGTAACT-CTCAAA s panTro5.chr17 16244120 32 + 83181570 GGAAAGAGTTACTTGGAAGAGTAACT-CTCAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151605 32 + 83442489 GGAAAGAGTTACTTGGGAGAGTAACT-CTCAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986627 32 + 4267968 GAAAAGAGTTACTTGGAAGAGTAACT-CTCAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967023 32 - 2193130 GGAAAGAGTTACCAGGAAGAGTAACT-CTCAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039584 32 - 77216781 GGAAAGAGTTACCTGGAAGAGTAACT-CTCAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952192 32 - 80997621 GGAAAGAGTTACCTGGAAGAGTAACT-CTCAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008435 32 + 10377808 GGAAAGAGTTACCTGGAAGAGTAACT-CTCAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895550 32 - 8458610 GGAAAGAGTTACCTGGAAGAGTAACT-CTCAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851290 32 + 75148670 GGAAAGAGTTACCTGGAAGAGTAACT-CTCAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074731 32 + 4244037 GGAAAGAGTTACCTGGAAAAGTAACT-CTCAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102600 32 + 4569836 GGAAAGAGTTACCTGGAAGAGTAACT-CTCAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062934 32 - 159171411 AGAAAGGGTTACCTGGAAGAGGAACT-CTCAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785323 32 + 3513951 GGAAAGAGTTACCTGGAAGAGGAACT-CTCAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834255 32 + 1920343 GGAAAGAGTTACCTGGAAGAGGAACT-CCCAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947414 32 - 7032639 GGAAAGAGTTACCTGGAAGAGGAACT-CTCAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772360 33 + 28711273 GAAGAGGGCCACTTGGAACAGTATCCACTTAAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040580 30 - 122082543 GGAGAGGCCTA--TGGAAGGATGTTT-GCCAAA i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 355965 0 - 852752 C e canFam3.chr9 21389024 12197 + 61074082 T a score=138986.000000 s hg38.chr17_GL383564v2_alt 57563 12 + 133151 GCTCTCTCTCAG s panTro5.chr17 16244152 12 + 83181570 GCTCTCTCTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151637 12 + 83442489 GCTCTCTCTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986659 12 + 4267968 GCTCTCTCTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967055 12 - 2193130 GCTCTCTCTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039616 12 - 77216781 GCTCTCTCTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952224 12 - 80997621 GCTCTCTCTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008467 12 + 10377808 GCTCTCTCTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895582 12 - 8458610 GCTCTCTCTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851322 12 + 75148670 GCTCTCTCTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074763 12 + 4244037 GCTCTCTCTCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102632 12 + 4569836 GCTCTCTCTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062966 12 - 159171411 GCTCTCTCTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785355 12 + 3513951 GCTCTCTCTCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834287 12 + 1920343 GCTCTCTCTCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947446 12 - 7032639 GCTCTCTCTCAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772393 9 + 28711273 GTTCTCTTT--- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21376827 11 + 61074082 GTTCACTC-CAG i canFam3.chr9 T 12197 C 0 e mm10.chr11 22040610 0 - 122082543 C e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 355965 0 - 852752 C a score=93513.000000 s hg38.chr17_GL383564v2_alt 57575 9 + 133151 AGCTCTCTC s panTro5.chr17 16244164 9 + 83181570 AGCTCTCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151649 9 + 83442489 AGCTCTCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986671 9 + 4267968 AGCTCTCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967067 9 - 2193130 AGCTCTCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039628 9 - 77216781 AGCTCTCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952236 9 - 80997621 AGCTCTCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008479 9 + 10377808 AGCTCTCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895594 9 - 8458610 AGCTCTCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851334 9 + 75148670 AGCTCTCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074775 9 + 4244037 AGCTCTCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102644 9 + 4569836 AGCTCTCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062978 9 - 159171411 AGCTGTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785367 9 + 3513951 AGCTGTCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834299 9 + 1920343 AGCTGTCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947458 9 - 7032639 AGCTGTCTT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22040610 9 - 122082543 AGTTCCTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21376838 6 + 61074082 ---ACTCTT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T e dasNov3.JH570468 355965 0 - 852752 C e otoGar3.GL873537 22772402 0 + 28711273 C a score=379048.000000 s hg38.chr17_GL383564v2_alt 57584 33 + 133151 TCTGGGGAGAAAGAACAGTGGCGGAAACTCCTG s panTro5.chr17 16244173 33 + 83181570 TCTGGGGAGAAAGAACAGTGGCGGAAACTCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151658 33 + 83442489 TCTGGGGAGAAAGAACAGTGGCGGAAACTCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986680 33 + 4267968 TCTGGGGAGAAAGAACAGTGGCGGAAACTCCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967076 33 - 2193130 TCTGGGGAGAAAGAACAGGGGCAGAACCTCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039637 33 - 77216781 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952245 33 - 80997621 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008488 33 + 10377808 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895603 33 - 8458610 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851343 33 + 75148670 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074784 33 + 4244037 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102653 33 + 4569836 TCTGGGGAGAAAGAACAGTGGCGGAACCTCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46062987 33 - 159171411 TCCGGGGAGAAAGAACAGTGGCAGAACCTCCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785376 33 + 3513951 TCTGGGGACAAAGAACAGTGGCAGAACCTCCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834308 33 + 1920343 TCCAGGGACAAAGAACAGTGGCAGAACGTCCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947467 33 - 7032639 TCCGGGGAGAAAGAAAAGTGGCAGAACCTCCTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772402 27 + 28711273 ------GAGGGAGTAAACTGGCAGAATCTTGTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040619 28 - 122082543 GCCATGGTTAAATCA-----GCAGAACCTCCGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21376844 29 + 61074082 TCCAGGG----AATCTAGTGGCAGAACCTCATG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 355965 20 - 852752 TCT-------------AGTGGTTGAAGCTCATG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35882786 5773 - 65901067 T a score=1341189.000000 s hg38.chr17_GL383564v2_alt 57617 80 + 133151 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTT s panTro5.chr17 16244206 80 + 83181570 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151691 80 + 83442489 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986713 80 + 4267968 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGCCTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967109 80 - 2193130 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGGTGTCCTCCCGTCTGAGTAATGCAGACAGCCTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039670 80 - 77216781 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952278 80 - 80997621 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008521 80 + 10377808 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895636 80 - 8458610 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851376 80 + 75148670 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074817 80 + 4244037 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102686 80 + 4569836 GGTGAGGAATCCTTGATTCCCAAACAACTCCACCCCATGTCCCTGGATGTCCTCCCCTCTGAGTAATGTGGGCAGCCTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063020 80 - 159171411 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCAGACAGTCTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785409 80 + 3513951 GGTGAGAAATCCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGCCCTCCCCTCTGAGTAATGCGGACAGCCTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834341 80 + 1920343 GGTGAGGAATCCCTGATTCCCAAACAACTCCACCCCATGTCTCCGGCTGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947500 80 - 7032639 GGTGAGGAATTCCTGATTCCCAAACAACTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGCGGACAGCCTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877013 80 - 65901067 GGTGAGGAGTTCCTGATTCCCAGACGGCTCCACCCCATGTCCCTGGCTGTCCTCCCCTCTGAGTAATGGGGAGAGACTTT i micMur3.chr16 T 5773 C 0 s otoGar3.GL873537 22772429 80 + 28711273 GGTGGGGAGTTGCTGATTCCCAGCCAACGCCACCTCATGTCCCTGGCTGTCCTTCCTTCTGAGTAATGGCGAGAGCCTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040647 79 - 122082543 GGAAAGGAATTTCTGATT-CCAAACAACCCCACCTAATGTCACAGGCTATCCTTCCCTCTGAGTAATGGGGTGAGCCTTA i mm10.chr11 C 0 C 0 s canFam3.chr9 21376873 72 + 61074082 GGTGTGGAGTC--------CCAAACAACTCCACCCCATGTCCCTCGCTCTCCTCCCCTCTGAGTAATGGGAAGAGCCATT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 355985 80 - 852752 GGTTAGAAGTCCCTGATTCCCAAATAACTCCACCCCGTGTCCCTTGCTGTCCTCCTCTCTGAGTAATGGGGAGAGCCATT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T a score=17290.000000 s hg38.chr17_GL383564v2_alt 57697 1 + 133151 T s panTro5.chr17 16244286 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151771 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986793 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967189 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039750 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952358 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008601 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895716 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851456 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074897 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102766 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063100 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785489 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834421 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947580 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22772509 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040726 1 - 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 21376945 1 + 61074082 T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356065 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2969552 5726 + 8555354 T e micMur3.chr16 35877093 0 - 65901067 C a score=408035.000000 s hg38.chr17_GL383564v2_alt 57698 22 + 133151 GGGGCTGTGATGATTCTATCTC s panTro5.chr17 16244287 22 + 83181570 GGGGCTGTGATGATTCTATCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151772 22 + 83442489 GGGGCTGTGATGATTCTATCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986794 22 + 4267968 GGGGCTGTGATGATTCTATCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967190 22 - 2193130 GGGGCTGTGATGATTCTATCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039751 22 - 77216781 GGGGCTGTGATGATTCTATCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952359 22 - 80997621 GGGGCTGTGATGATTCTATCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008602 22 + 10377808 GGGGCTGTGATGATTCTATCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895717 22 - 8458610 GGGGCTGTGATGATTCTATCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851457 22 + 75148670 GGGGCTGTGATGATTCTATCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074898 22 + 4244037 GGGGCTGTGATGATTCTATCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102767 22 + 4569836 GGGGCTGTGATGATTCTATCTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063101 22 - 159171411 GGGGCTGTGATGATTCTCCCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785490 22 + 3513951 GGGGCTGTGATGATTCTCCCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834422 22 + 1920343 GGGGCTATGATGATTCTCTCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947581 22 - 7032639 GGGGCTGTGATGATTCTCCCTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877093 22 - 65901067 GGGGCTGTAATAATTCCACCTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2963826 22 + 8555354 GGGGCTGTAATAATTCCACCTC i proCoq1.NW_012135969v1 T 5726 C 0 s otoGar3.GL873537 22772510 22 + 28711273 GGGGCTGTAATAATTCTGCCTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22040727 22 - 122082543 GGGACTGTGATGAATCTGCCTC i mm10.chr11 C 0 I 11679 s canFam3.chr9 21376946 22 + 61074082 GGGGTTGTGATGCTCCTGTCTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356066 22 - 852752 GGGGCTGTGATGATTCTGCCTC i dasNov3.JH570468 C 0 C 0 a score=290861.000000 s hg38.chr17_GL383564v2_alt 57720 16 + 133151 CTATGAAGCCATCTGA s panTro5.chr17 16244309 16 + 83181570 CTATGAAGCCATCTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151794 16 + 83442489 CTATGAAGCCATCTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986816 16 + 4267968 CTATGAAGCCATCTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967212 16 - 2193130 CCATGAAGCCATCTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039773 16 - 77216781 CTATGAAGCCATCTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952381 16 - 80997621 CTATGAAGCCATCTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008624 16 + 10377808 CTATGAAGCCATCTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895739 16 - 8458610 CTATGAAGCCATCTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851479 16 + 75148670 CTATGAAGCCATCTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074920 16 + 4244037 CTATGAAGCCATCTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102789 16 + 4569836 CTATGAAGCCATCTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063123 16 - 159171411 CTATGAAGCCGTCTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785512 16 + 3513951 CTATGAAGCCGTCTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834444 16 + 1920343 CTATGAAGCCGTCTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947603 16 - 7032639 CTATGAAGCTGTCTGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877115 16 - 65901067 CTTTGAAGCTATCTGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2963848 16 + 8555354 CTTTGAAGCTATCTGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22772532 16 + 28711273 CTTTGAAGCCACCTGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052428 16 - 122082543 CTTTGAAGCCAAACCA i mm10.chr11 I 11679 C 0 s canFam3.chr9 21376968 16 + 61074082 CTTTGAAGCCATCTGA i canFam3.chr9 C 0 I 16827 s dasNov3.JH570468 356088 16 - 852752 CTTTGAAGCTATCTGA i dasNov3.JH570468 C 0 C 0 a score=3695844.000000 s hg38.chr17_GL383564v2_alt 57736 225 + 133151 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGGTATA-AAAGGACTGCAGAGGAAGGAGAGACTCAAAC s panTro5.chr17 16244325 225 + 83181570 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTATGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTGGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGGTATA-AAAGGACTGCAGAGGAAGGAGAGACTCAATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16151810 225 + 83442489 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTATGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTGGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGGTATA-AAAGGACTGCAGAAGAAGGAGAGACTCAATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3986832 225 + 4267968 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACAATTAATGCTATA-AAAGGACTGCGGAGGAAGGAGAGACTCAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967228 224 - 2193130 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGTTTGA-GGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACCATTAATGGTATA-AAAGGACCACAGAGGAAGGAGAGACTCAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30039789 225 - 77216781 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAACTGAAGCA-TTAGGAAAGGAA--ACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952397 225 - 80997621 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAACTGAAGCA-TTAGGAAAGGAA--ACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008640 225 + 10377808 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAACTGAAGCA-TTAGGAAAGGAA--ACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895755 225 - 8458610 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCTTATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851495 225 + 75148670 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2074936 225 + 4244037 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCCGTATGCCAAGCCCCCACCCACCGTTAATAGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2102805 224 + 4569836 TGAAACTCTGATTTCACCAACCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGTTGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATG-CGTATGCAAAGCCCCCACCCACCATTAATAGTATA-AAAGGACCGTAGAGGAGGGAGAGACTCAAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063139 225 - 159171411 TGAAACTCTGATTTCACCAATCGCTAGCACCCAGGAAAAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGAATTTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACCATTAATAGTATA-AAAGGACCACAGAGGAAGGAGAGACTCAAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785528 225 + 3513951 TGAAACTCTGATTTCACCAATCACTAGCGCCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAAGCCCCCACCCACCATTAATGGTATA-AAAGGACCGCAGAGGAAGGAGAGACTCAAAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834460 225 + 1920343 TGAAACTCTGATTTCACCAATCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCCAAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGCATGCCAAGCCCCCACCCACCATTAATGGTATA-AAAGGACCGCAGAGGAACAAGAGACTCAAAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947619 225 - 7032639 TGAAACTCTGATTTCACCAATCACTAGCACCCAGGAAGAG-CCTGGTGTGACA-TAAGCTGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTAGAAGCATCTAACTAGCATATTTTGGAGAAAAATTAGCTGAAGCA-TTAGGAAAGGAA--ACTATGCTGTATGCCAGGCCCCCACCCACCATTAATGGTATA-AAAGGACTGCAGAGGAAGGAGAGACTCAAAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877131 225 - 65901067 TGAAACTCTGATTTCACCAACCACTGGCACTCAGGAAGAG-CCTGGTGTGACA-CAAGATGAATGGAATAATTTTATGGGATGAGGGGGGACTCTTTGGAAGCATCTAACTAGCATATTTTGGTGAAAAATTAGCTAAAGCA-TTAGGAAATGAA--ACTATGCTGTATGCCAAGCCCCCACCCACCATTAAGGGTATA-AAAGGATCATAGAGAAAGGAGAGCCTCAAAC i micMur3.chr16 C 0 I 24 s proCoq1.NW_012135969v1 2963864 224 + 8555354 TGAAACTCTGATTTCACCAACCACTGGCACCCAGGAAGAG-TCTGGTGTGACA-CAAGCTGAATGGAATAATTTTATGGGATGA-GAGGGACTCTTTGGAAGCATCTAAATAGTATATTTTGGAGAAAAATTAGCTAAAGCA-TTAGGAAATGAA--ACTATGCTGTATGCCAAGCCCCCACCCACCATTAGGGGTATA-AAAGGACCATAGAGGAAGGAGAGCCTCAAAT i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22772548 216 + 28711273 TGAAACTCTGATTTCACCAACCACTGGCACCCTGGATGAG-CCTGGTGTGACA-CAACCTAAATGGAATAATTTTATGGGATGAGGAGGGACTCTTTAGAAGCATCTAAGTAGCATATTTTGGAGAAAAATTAGCTAAAGCA-TTAGGAAATGAA--ACTATGATGTATGCCAAGCCTTCACCTATCATTA--GGTATA-AAAGGACCTTCGAGGAAGGAGAGA------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052444 209 - 122082543 TGAAGCTCTTTCTGAACTAACCAGCATGATTGGTGAGGAGTCCTGACATAGCAGGAAGCCAAAGTAAAACATTTTATGAGCTAA---AGGACTCATGCGAGGTGGCTAAATAACAAAT------GGGAAATTGGT---AATA-TGAGCAAAAGGAGGATAATGTTTTACATGGTTGCCACACCCACCACTGACAGGATATAAAGCTCCAAAGAGGA---------CCAGGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21393811 217 + 61074082 TGAAGGTCTTACTTAACTAACCAGCATAATTGGTGAGGAGTCCTGACTTAGCAGGAAGCCAGAATAAAGCATTTTATGAGGTAA---AGGACTCGCGTGAGGTGGCTAAATAACAAAT-----GGGAAAATTGGCAAATACG-GTA--AAAGGGG--GTAATGCTGCATGTGGTCACCACACCCACTGCTGACAGAATA-TAAAGCCCTGAAAAGGACCAGGGCTTACACC i canFam3.chr9 I 16827 I 15 s dasNov3.JH570468 356104 222 - 852752 TGAAACACTGATTTCACCAACCATTAGCATCCAGGAGGAG-TCTGATGTGACA-CAAGCAGAATGGAATAATTTTATGGGATGA--GGGGACTCTTTGGAAGCATCT--TTTGCTTATTTTGGAAAAAAATTAGCTGAAGCATTTAGGAAAAGAA--ATTATGCTATATGCCAAGCCCCCACCCACCTCTAAGGGTATA-AAAGGAAGGCGGAGGAAGGAGAAGCTCAAAC i dasNov3.JH570468 C 0 C 0 a score=323296.000000 s hg38.chr17_GL383564v2_alt 57961 24 + 133151 -CTGCCCACATCCAC----CTCCAGCAGC s panTro5.chr17 16244550 24 + 83181570 -CTGCCCACATCCAC----CTCCAGCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152035 24 + 83442489 -CTGCCCACATCCAC----CTCCAGCAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987057 24 + 4267968 -CGGCCCACATCCAC----CTCCAGCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967452 24 - 2193130 -CTGCCCACATCCAC----CTCCAGCAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040014 24 - 77216781 -CTGCCCACATCCAC----CTCCAGCAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952622 24 - 80997621 -CTGCCCACATCCAC----CTCCAGCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008865 24 + 10377808 -CTGCCCACATCCAC----CTCCAGCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1895980 24 - 8458610 -CTGCCCACATCCAC----CTCCAGCAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851720 24 + 75148670 -CTGCCCACATCCAC----CTCCAGCAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075161 24 + 4244037 -CTGCCCACATCCAC----CTCCAGCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103029 24 + 4569836 -CAGCCCACATCCAC----CTCCAGCAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063364 24 - 159171411 -CTGCTCACATCCAC----TTCCAGCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785753 24 + 3513951 -CTGCTCACATCCAC----TTCCAGCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834685 24 + 1920343 -CTGCTCACATACAC----TTCCAGCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947844 24 - 7032639 -CTGCTCACATCCAC----TTCCAGCAGC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2964089 24 + 8555354 -CCACTCACGTCCAC----GTCCAGAAGC i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22772764 22 + 28711273 ---ACCCACATCCAC----TTCCAGCAGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052653 28 - 122082543 -CTTCTACCAGACACAGGACATCAGGCGT i mm10.chr11 C 0 I 5 s canFam3.chr9 21394043 23 + 61074082 -CCTTTGAAACTGCC----CTTCAG-AGC i canFam3.chr9 I 15 C 0 s dasNov3.JH570468 356326 25 - 852752 TTCATCCACATCCAC----CTCCAGCAGC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35877356 24 - 65901067 I a score=136753.000000 s hg38.chr17_GL383564v2_alt 57985 11 + 133151 --------TTACCTGCTTT s panTro5.chr17 16244574 11 + 83181570 --------TTACCTGCTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152059 11 + 83442489 --------TTACCTGCTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987081 11 + 4267968 --------TTACCTGCTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967476 11 - 2193130 --------TTACCTGCTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040038 11 - 77216781 --------TTACCTGCTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27952646 11 - 80997621 --------TTACCTGCTTT i macFas5.chr16 C 0 I 11999 s macNem1.NW_012014910v1 2008889 11 + 10377808 --------TTACCTGCTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896004 11 - 8458610 --------TTACCTGCTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851744 11 + 75148670 --------TTACCTGCTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075185 11 + 4244037 --------TTACCTGCTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103053 11 + 4569836 --------TTACCTGCTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063388 11 - 159171411 --------TTACCTGCCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785777 11 + 3513951 --------TTACCTGCCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834709 11 + 1920343 --------TTACCTGCCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947868 11 - 7032639 --------TTACCTGCCTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877380 11 - 65901067 --------TCACCTGCTCT i micMur3.chr16 I 24 C 0 s proCoq1.NW_012135969v1 2964113 11 + 8555354 --------TCACCTGCTCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22772786 11 + 28711273 --------TCACCTGCTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052686 7 - 122082543 --------TTGACTC---- i mm10.chr11 I 5 C 0 s canFam3.chr9 21394066 1 + 61074082 -------------T----- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356351 19 - 852752 TCACCTGTTCACCTACTCT i dasNov3.JH570468 C 0 C 0 a score=156819.000000 s hg38.chr17_GL383564v2_alt 57996 11 + 133151 TCCATTAC-CTG s panTro5.chr17 16244585 11 + 83181570 TCCATTAC-CTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152070 11 + 83442489 TCCATTAC-CTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987092 11 + 4267968 TCCATTAC-CTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967487 11 - 2193130 TCCATTAC-CTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040049 11 - 77216781 TCCATTAC-CTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964656 9 - 80997621 TCCACTTC-C-- i macFas5.chr16 I 11999 C 0 s macNem1.NW_012014910v1 2008900 11 + 10377808 TCCATTAC-CTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896015 11 - 8458610 TCCATTAC-CTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851755 11 + 75148670 TCCATTAC-CTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075196 11 + 4244037 TCCATTAC-CTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103064 11 + 4569836 TCCATTAC-CTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063399 11 - 159171411 TCCATTAC-CAG i calJac3.chr5 C 0 I 16356 s saiBol1.JH378271 1785788 11 + 3513951 TCCATTAC-CCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834720 11 + 1920343 TCCATTAC-CCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947879 11 - 7032639 TCCATTAC-CTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877391 11 - 65901067 CCCATTAC-CTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2964124 11 + 8555354 CCCATTAC-CTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22772797 11 + 28711273 TCCATTAC-CTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052693 11 - 122082543 -TCATAACTCTG i mm10.chr11 C 0 I 4 s canFam3.chr9 21394067 9 + 61074082 -CCACTCC-CT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356370 11 - 852752 CCCATCAC-CTC i dasNov3.JH570468 C 0 C 0 a score=68998.000000 s hg38.chr17_GL383564v2_alt 58007 5 + 133151 TTCCA s panTro5.chr17 16244596 5 + 83181570 TTCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152081 5 + 83442489 TTCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987103 5 + 4267968 TTCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967498 5 - 2193130 TTCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040060 5 - 77216781 TCCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964665 5 - 80997621 TCCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008911 5 + 10377808 TCCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896026 5 - 8458610 TCCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851766 5 + 75148670 TCCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075207 5 + 4244037 TCCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103075 5 + 4569836 TCCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079766 5 - 159171411 TCCCT i calJac3.chr5 I 16356 C 0 s saiBol1.JH378271 1785799 5 + 3513951 TCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834731 5 + 1920343 TCCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6947890 5 - 7032639 TCCCG i aotNan1.NW_018502359v1 C 0 I 14562 s micMur3.chr16 35877402 5 - 65901067 TCCCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2964135 5 + 8555354 TCCCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22772808 5 + 28711273 TCAGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052708 5 - 122082543 CTCCA i mm10.chr11 I 4 C 0 s canFam3.chr9 21394076 3 + 61074082 --CCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356381 5 - 852752 TCTCA i dasNov3.JH570468 C 0 C 0 a score=333988.000000 s hg38.chr17_GL383564v2_alt 58012 20 + 133151 GCACCATGTCTTACAGTTGT s panTro5.chr17 16244601 20 + 83181570 GCACCATGTCTTACAGTTGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152086 20 + 83442489 GCACCATGTCTTACAGTTGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987108 20 + 4267968 GCACCATGTCTTACAGTTGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967503 20 - 2193130 GCACCATGTCTTACAGTTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040065 20 - 77216781 GCACCATGTCTTACAGTTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964670 20 - 80997621 GCACCATGCCCTACAACTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008916 20 + 10377808 GCACCATGTCTTACAGTTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896031 20 - 8458610 GCACCATGTCTTACAGTTGT i cerAty1.NW_012006043v1 C 0 I 11997 s chlSab2.chr16 64851771 20 + 75148670 GCACCATGTCTTACAGTTGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075212 20 + 4244037 GCACCATGTCTTACAGTTGT i manLeu1.NW_012106252v1 C 0 I 18117 s colAng1.NW_012122154v1 2103080 20 + 4569836 GCACCATGTCTTACAGTTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079771 20 - 159171411 GCACCATGCCCTACAACTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785804 20 + 3513951 GCACCATGTCTTACAGTTGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834736 20 + 1920343 GCATCATGTCTTACAGTTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6962457 20 - 7032639 GCACCATGCCCTACAACTGC i aotNan1.NW_018502359v1 I 14562 C 0 s micMur3.chr16 35877407 20 - 65901067 GCACCATGTCTCTCACCTGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2964140 20 + 8555354 GCACCATGTCTCTCACCTGC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22772813 20 + 28711273 GCATCATGTCTTACTCCTGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052713 20 - 122082543 GCACCATGCCATACAACTGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21394079 20 + 61074082 GCACCATGCCTTACAACTGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356386 20 - 852752 GCACCATGCCATACAACTGC i dasNov3.JH570468 C 0 C 0 a score=1061841.000000 s hg38.chr17_GL383564v2_alt 58032 52 + 133151 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC s panTro5.chr17 16244621 52 + 83181570 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152106 52 + 83442489 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987128 52 + 4267968 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967523 52 - 2193130 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040085 52 - 77216781 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964690 52 - 80997621 TGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008936 52 + 10377808 TGCCTGCCCAGCCTGGGCTGCCACACCAGCTGCTCCTCCCGGCCCTGTGTGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908048 52 - 8458610 TGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGC i cerAty1.NW_012006043v1 I 11997 C 0 s chlSab2.chr16 64851791 52 + 75148670 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093349 52 + 4244037 TGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGC i manLeu1.NW_012106252v1 I 18117 C 0 s colAng1.NW_012122154v1 2103100 52 + 4569836 TGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079791 52 - 159171411 TGCCTGCCCAGCCTGAGCTGCCACACCAGCTGCTCCTCCCGGCCCTGCGTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785824 52 + 3513951 TGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834756 52 + 1920343 TGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6962477 52 - 7032639 TGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i aotNan1.NW_018502359v1 C 0 T 12891 s micMur3.chr16 35877427 52 - 65901067 TGTCAGCCCAGCTTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2964160 52 + 8555354 TGCCGGCCCAGCCTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22772833 52 + 28711273 GTCCTGCCCAGCCTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052733 52 - 122082543 TGCCTGCCCGCCATGAGCTGCCGCACCAGCTGCTCTTCCCGGCCCTGCGTGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21394099 52 + 61074082 TGCCTGCCCAACCTGAGCTGCCGCTCCACCTGCTCCTCCCGGCCCTGCGTGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356406 52 - 852752 TGCCTGCCCAACCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGC i dasNov3.JH570468 C 0 C 0 a score=947314.000000 s hg38.chr17_GL383564v2_alt 58084 48 + 133151 CCCCCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCG s panTro5.chr17 16244673 48 + 83181570 CCCCCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152158 48 + 83442489 CCCCCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987180 48 + 4267968 CCCCCAGCTGCCACGGCTATACCCTGCCTGGGGCCTGCAACATCCCCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967575 48 - 2193130 CCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040137 48 - 77216781 CCCCCAGCTGCCACAGCCACACGCTGCCTGGGGCCTGCAACATCCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964742 48 - 80997621 CCCCCAGCTGCCACGGACGCACCCTACCCGGGGCCTGCAACATCCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2008988 48 + 10377808 CCCCCAGCTGCCACAGCCACACGCTGCCTGGGGCCTGCAACATCCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908100 48 - 8458610 CCCCCAGCTGCCACGGCCGCACCCTACCCGGGGCCTGCAACATTCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851843 48 + 75148670 CCCCCAGCTGCCACGGCTGCACGCTGCCTGGGGCCTGCAACATCCCCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093401 48 + 4244037 CCCCCAGCTGCCACGGCCGCACCCTACCCGGGGCCTGCAACATTCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103152 48 + 4569836 CCCCCAGCTGCCACGGCCACACGCTGCCCGGGGCCTGCAACATACCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079843 48 - 159171411 CCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1785876 48 + 3513951 CCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834808 48 + 1920343 CTCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949638 48 - 7032639 CCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i aotNan1.NW_018502359v1 T 12891 C 0 s micMur3.chr16 35877479 48 - 65901067 CCCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2964212 48 + 8555354 CCCCCAGCTGCCACACCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i proCoq1.NW_012135969v1 C 0 T 81795 s otoGar3.GL873537 22772885 48 + 28711273 CCCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052785 48 - 122082543 CCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i mm10.chr11 C 0 C 0 s canFam3.chr9 21394151 48 + 61074082 CCCCCAGCTGCCATACCTGCACCCTGCCTGGAGCCTGCAACATCCCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 356458 48 - 852752 CCCCCAGCTGCCATGGCTGCACCCTGCCCGGTGCCTGCAACATCCCCG i dasNov3.JH570468 C 0 C 0 a score=4374757.000000 s hg38.chr17_GL383564v2_alt 58132 247 + 133151 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAAACTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCGTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- s panTro5.chr17 16244721 247 + 83181570 CCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAAACTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152206 247 + 83442489 CCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAAACTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987228 247 + 4267968 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAAACTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967623 247 - 2193130 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCATCAGCTGGAGCGGGACAACGCGGAGCTGGAGAAACTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTCGGC-------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040185 247 - 77216781 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964790 247 - 80997621 CCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAGCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAGGAGGTGGGC-------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009036 247 + 10377808 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908148 247 - 8458610 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAGGAGGTGGGC-------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64851891 247 + 75148670 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTTGGC-------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093449 247 + 4244037 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAGGAGGTGGGC-------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103200 247 + 4569836 CCAATGTGAGTAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGACAATGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCGCAGCAGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCACGATCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTCGGT-------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079891 247 - 159171411 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGCACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTGGGC-------- i calJac3.chr5 C 0 T 16356 s saiBol1.JH378271 1785924 247 + 3513951 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGATCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAGCTGGAGCACCTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGCTGGGC-------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834856 247 + 1920343 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTggagaaggtgcgtcagctggagcgggagaacgcggagctggagcgCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGTGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTGGGC-------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949686 247 - 7032639 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAACGCGGAACTGGAGCACCTCATCCAGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTGCGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAGGGGGTGGGC-------- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877527 246 - 65901067 CCAATGTGGGCAACTGCAACTGGTTCTGTGAAGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCGGCTGGAGCGGGAGAACGCGGAGCTGGAGAGCCTCATCCAGCAGCGGTGCCAGGAGCAGGACCCCTTGGTGTGTGCCAACTACCAGTCCTACTTCCGGACCATCGAGGAGCTCCAGCAGAAGGTGAGG-GCTGGGC-------- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22772933 246 + 28711273 CCAACGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCTTGAATGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGGCAGCTGGAGCGGGAGAACGCGGAGCTGGAGGTCCGCATCCAGGAGCGCTGCCAGGAGCAGGATCCCCTGGTGTGTGCCAACTACCAGTCCTACTTCCGCACCATTGAGGAGCTCCAGCAGAAGGTGAGG-GGTGGGC-------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052833 247 - 122082543 CCAATGTGGGCAACTGCAATTGGTTCTGTGAGGGCTCCTTCAATGGCAATGAGAGGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTATATGGAGAAGGTGAGGCAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAAGATCCAAGAGAGGAACCAGCAGCAGGACCCCCTGGTGTGTCCTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGGTGAGCGGGACGGG-------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21394199 247 + 61074082 CCAACGTGGGCAACTGTGGCTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAGAACGCGGAGCTGGAGAGCCGCATCCGGGAGTGGTGCCAGCAGCAGGTGCCTTTCGTGTGTCCCAGCTACCAGTCCTACTTCCGGACCATTGAGGAGCTCCAGCAGAAGGTGAGGGGGTGGGC-------- i canFam3.chr9 C 0 I 1388 s dasNov3.JH570468 356506 255 - 852752 CCAATGTGGGCAGCTGCGGCTGGCTCTGCGAGGGCTCCTTCAATGGCAACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAGAACGCGGAGCTGGAGGGCCGCATCCACGAGTGGTGCCAGCAGCATGTGCCCTTCGTGTGCCCGGACTACCAGTCCTACTTCCGGACCATCGAGGAGCTGCAGCAGAAGGTGAGGGGGTGGAACTCACCGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=19000.000000 s hg38.chr17_GL383564v2_alt 58379 1 + 133151 C s panTro5.chr17 16244968 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152453 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987475 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967870 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040432 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27965037 1 - 80997621 C i macFas5.chr16 C 0 T 11997 s macNem1.NW_012014910v1 2009283 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908395 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 T 11997 s chlSab2.chr16 64852138 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093696 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 T 18117 s colAng1.NW_012122154v1 2103447 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063782 1 - 159171411 C i calJac3.chr5 T 16356 C 0 s saiBol1.JH378271 1786171 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835103 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949933 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877773 1 - 65901067 C i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773179 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22053080 1 - 122082543 C i mm10.chr11 C 0 C 0 s dasNov3.JH570468 356761 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21394446 1388 + 61074082 I a score=15561.000000 s hg38.chr17_GL383564v2_alt 58380 1 + 133151 A s panTro5.chr17 16244969 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152454 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987476 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967871 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040433 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953041 1 - 80997621 A i macFas5.chr16 T 11997 C 0 s macNem1.NW_012014910v1 2009284 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896399 1 - 8458610 A i cerAty1.NW_012006043v1 T 11997 C 0 s chlSab2.chr16 64852139 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075580 1 + 4244037 A i manLeu1.NW_012106252v1 T 18117 C 0 s colAng1.NW_012122154v1 2103448 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063783 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786172 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835104 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949934 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22773180 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22053081 1 - 122082543 A i mm10.chr11 C 0 T 11656 s dasNov3.JH570468 356762 1 - 852752 A i dasNov3.JH570468 C 0 I 44 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35877774 0 - 65901067 C e canFam3.chr9 21394446 1388 + 61074082 I a score=122247.000000 s hg38.chr17_GL383564v2_alt 58381 13 + 133151 TATGGGG-GGCCAG s panTro5.chr17 16244970 13 + 83181570 TATGGGG-GGCCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152455 13 + 83442489 TATGGGG-GGCCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987477 13 + 4267968 TATGGGG-GGCCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967872 13 - 2193130 TGTTGGA-GGCCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040434 13 - 77216781 CGTGGGG-GGCCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953042 13 - 80997621 CGTGGGG-GGCCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009285 13 + 10377808 CGTGGGG-GGCCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896400 13 - 8458610 CATGGGG-GGCCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852140 13 + 75148670 CGTGGGG-GGCCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075581 13 + 4244037 CGTGGGG-GGCCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103449 13 + 4569836 CTTGGGG-GGCCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063784 13 - 159171411 TGTGGGG-GCATGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786173 13 + 3513951 TGTGGGG-GCACGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835105 14 + 1920343 TGTGGGGAACACAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949935 13 - 7032639 TGTGGGG-GCACGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877774 13 - 65901067 CATGGGA-GCCCAG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773181 13 + 28711273 TGTAAAG-GCCCAG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 356807 13 - 852752 TGTGGGA-ACACAG i dasNov3.JH570468 I 44 C 0 e mm10.chr11 22053082 11656 - 122082543 T e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21394446 1388 + 61074082 I a score=663761.000000 s hg38.chr17_GL383564v2_alt 58394 43 + 133151 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCA s panTro5.chr17 16244983 43 + 83181570 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152468 43 + 83442489 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987490 43 + 4267968 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTTTCAAGTTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967885 43 - 2193130 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040447 43 - 77216781 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953055 43 - 80997621 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009298 43 + 10377808 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896413 43 - 8458610 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852153 43 + 75148670 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075594 43 + 4244037 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103462 43 + 4569836 CAGCAGCTGGCTCTCTTTGAACAGTAAGACATTCTCAAGTTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063797 43 - 159171411 CAGCAGCTGGCTGTCTTTGAGCAGTAAGACATTCTCAAGTTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786186 43 + 3513951 CAGCAGCTGGCTGTCTTTGAGCAGTAAGACACTCTCAAGTTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835119 43 + 1920343 CAGCAGCTGGCTGTCTTTGAGCAGTAAGACATTCTCAAGTTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949948 43 - 7032639 CAGCAGCTGGCTGTCTTTGAGCAGTAAGACATTCTCAAGTTCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877787 43 - 65901067 CAGCCACTGGCTCTCTTTGATCAATAAGACATTCTCAAGTTCA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773194 43 + 28711273 CAGCAGCTGGTTCTTTCTGAACAATATGACATTTTCAAGTTCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22041426 43 - 122082543 CAGCAGTTGCCTTTTCTTGAATGGAGAGACATGCTCAAGTTCA i mm10.chr11 T 11656 I 13486 s dasNov3.JH570468 356820 41 - 852752 CAACAGCTGGC--TTTTTGTACAGGAAGACATTCTCAAGTTCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21394446 1388 + 61074082 I a score=58775.000000 s hg38.chr17_GL383564v2_alt 58437 5 + 133151 AGTGT s panTro5.chr17 16245026 5 + 83181570 AGTGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152511 5 + 83442489 AGTGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987533 5 + 4267968 AGTGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967928 5 - 2193130 AGTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040490 5 - 77216781 AGTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953098 5 - 80997621 AGTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009341 5 + 10377808 AGTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896456 5 - 8458610 AGTTT i cerAty1.NW_012006043v1 C 0 I 2 s chlSab2.chr16 64852196 5 + 75148670 AGTGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075637 5 + 4244037 AGTTT i manLeu1.NW_012106252v1 C 0 I 2 s colAng1.NW_012122154v1 2103505 5 + 4569836 AGTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063840 5 - 159171411 AGTGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786229 5 + 3513951 AGTGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835162 5 + 1920343 AGTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949991 5 - 7032639 AGTGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877830 5 - 65901067 AGTGG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773237 5 + 28711273 AGGGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22054955 5 - 122082543 AATGT i mm10.chr11 I 13486 C 0 s dasNov3.JH570468 356861 5 - 852752 AGCTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21394446 1388 + 61074082 I a score=161175.000000 s hg38.chr17_GL383564v2_alt 58442 11 + 133151 ACCTCATGAGA s panTro5.chr17 16245031 11 + 83181570 ACCTCATGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152516 11 + 83442489 ACCTCATGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987538 11 + 4267968 ACCTCATGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967933 11 - 2193130 ACCTCATGAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040495 11 - 77216781 ACCTCATGAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953103 11 - 80997621 ACCTCATGAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009346 11 + 10377808 ACCTCATGAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896463 11 - 8458610 TTCTCATGAGA i cerAty1.NW_012006043v1 I 2 C 0 s chlSab2.chr16 64852201 11 + 75148670 ACCTCATGAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075644 11 + 4244037 TTCTCATGAGA i manLeu1.NW_012106252v1 I 2 C 0 s colAng1.NW_012122154v1 2103510 11 + 4569836 ACCTCATGAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063845 11 - 159171411 ACCTCATGAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786234 11 + 3513951 ACCTCATGAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835167 11 + 1920343 ACCTCATGAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6949996 11 - 7032639 ACCTCATGAGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877835 11 - 65901067 ACCTCACGAGA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773242 11 + 28711273 ACCTCATGATA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22054960 11 - 122082543 ATCTCATGTCA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 356866 11 - 852752 TCCTCATGGTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21394446 1388 + 61074082 I a score=130080.000000 s hg38.chr17_GL383564v2_alt 58453 12 + 133151 GAA---ATTTCTTTT- s panTro5.chr17 16245042 12 + 83181570 GAA---ATTTCTTTT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152527 12 + 83442489 GAA---ATTTCTTTT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987549 12 + 4267968 GAA---ATTTCTTTT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967944 12 - 2193130 GAA---ATTTCTTTT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040506 12 - 77216781 TAA---ATTTCTTTT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953114 12 - 80997621 TAA---ATTTCTTTT- i macFas5.chr16 C 0 I 13326 s macNem1.NW_012014910v1 2009357 12 + 10377808 TAA---ATTTCTTTT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896474 12 - 8458610 TAA---ATTTCTTTT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852212 12 + 75148670 TAA---ATTTCTTTT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075655 12 + 4244037 TAA---ATTTCTTTT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103521 12 + 4569836 GAA---ATTTCTTTT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063856 12 - 159171411 GAA---ATTTCTTTT- i calJac3.chr5 C 0 I 17831 s saiBol1.JH378271 1786245 12 + 3513951 GAA---ATTTCTTTT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835178 12 + 1920343 GAA---ATTTCTTTT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950007 12 - 7032639 GAA---ATTTCTTTT- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877846 12 - 65901067 GAC---ATTTCTTTT- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773253 12 + 28711273 GAG---GTTTTTTTC- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22054971 14 - 122082543 CAATCCATCCCCTG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21395834 11 + 61074082 -GA---ATCCTGTCT- i canFam3.chr9 I 1388 I 1 s dasNov3.JH570468 356877 12 - 852752 -GA---ATCTTGTTTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=1498091.000000 s hg38.chr17_GL383564v2_alt 58465 89 + 133151 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTA s panTro5.chr17 16245054 89 + 83181570 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152539 89 + 83442489 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987561 89 + 4267968 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1967956 89 - 2193130 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040518 89 - 77216781 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966452 89 - 80997621 CAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagta i macFas5.chr16 I 13326 T 13326 s macNem1.NW_012014910v1 2009369 89 + 10377808 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896486 89 - 8458610 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852224 89 + 75148670 CAGATTCTATGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075667 89 + 4244037 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAACGCCAAGCTGGCCTCTGATGACTTCAGAAGCAAGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103533 89 + 4569836 CAGATTCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGACTTCAGAAGCAAGTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081699 89 - 159171411 CAGATCCTGTGCGGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCTACAGATGACTTCAGAACCaagta i calJac3.chr5 I 17831 T 17831 s saiBol1.JH378271 1786257 89 + 3513951 CAGATTCTGTGTGGCAAGGCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCCTCTGATGACTTTAGAACCAAGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835190 89 + 1920343 CAGATTCTGTGTGGCAAGGCTGAGAACGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGTTGGCCTCTGATGACTTCAGAACCAAGTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950019 89 - 7032639 CAGATTCTGTGTGGCAAGGCTGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCCTCTGATGACTTTAGAACCAAGTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877858 89 - 65901067 CAGATTCTGTGTGCCAAATCTGAGAATGCCAGGATAGTGACGAAGGTAGACAATGCCAAGCTGGCCTCTGATGACTTCAGAACCAAGTA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773265 89 + 28711273 CAGATTCTGTGTGCCAAGTCTGAGAATGCCAGAATGGTGATGAAGATTGATAATACCAAGCTGGCCTCTGATGACTTCAGAACCAAGTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22054985 89 - 122082543 CAGATTCTCTGTGGCAAGTCTGAGAACGGCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCTGATGACTTCAGGACCAAGTA i mm10.chr11 C 0 T 13483 s canFam3.chr9 21395846 89 + 61074082 CAGATCCTGTGCAGCAAGTCTGAGAACGCCAGGCTGGTGGTGCAGATCGATAATGCCAAACTGGCTGCAGATGACTTCAGGACCaagta i canFam3.chr9 I 1 I 1389 s dasNov3.JH570468 356889 89 - 852752 TAGATTCTGTGTGGCAAGTCTGAAAACACGAGGCTGCTGGTGCAGATCGACAATGCCAAGCTGGCATCTGATGACTTCAGAACAAAGTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=72639.000000 s hg38.chr17_GL383564v2_alt 58554 5 + 133151 TGTTG s panTro5.chr17 16245143 5 + 83181570 TGTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152628 5 + 83442489 TGTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987650 5 + 4267968 TGTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968045 5 - 2193130 TGTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040607 5 - 77216781 TGTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953215 5 - 80997621 TGTTG i macFas5.chr16 T 13326 C 0 s macNem1.NW_012014910v1 2009458 5 + 10377808 TGTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896575 5 - 8458610 TGTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852313 5 + 75148670 TGTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075756 5 + 4244037 TGTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103622 5 + 4569836 TGTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063957 5 - 159171411 TGTTG i calJac3.chr5 T 17831 C 0 s saiBol1.JH378271 1786346 5 + 3513951 TGTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835279 5 + 1920343 TGTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950108 5 - 7032639 TGTTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877947 5 - 65901067 TGTTG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773354 5 + 28711273 TGTTG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 356978 5 - 852752 GGTCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22055074 13483 - 122082543 T e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I a score=17290.000000 s hg38.chr17_GL383564v2_alt 58559 1 + 133151 A s panTro5.chr17 16245148 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152633 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987655 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968050 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040612 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953220 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009463 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896580 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852318 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075761 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103627 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063962 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786351 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835284 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950113 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877952 1 - 65901067 A i micMur3.chr16 C 0 I 19 s otoGar3.GL873537 22773359 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22041591 1 - 122082543 A i mm10.chr11 T 13483 I 17 s dasNov3.JH570468 356983 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I a score=-219.000000 s hg38.chr17_GL383564v2_alt 58560 4 + 133151 -AC---------------TT----------------- s panTro5.chr17 16245149 4 + 83181570 -AC---------------TT----------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152634 4 + 83442489 -AC---------------TT----------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987656 4 + 4267968 -AC---------------TT----------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968051 4 - 2193130 -AC---------------TT----------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040613 4 - 77216781 -AC---------------TT----------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953221 4 - 80997621 -AC---------------TT----------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009464 4 + 10377808 -AC---------------TT----------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896581 4 - 8458610 -AC---------------TT----------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852319 4 + 75148670 -AC---------------TT----------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075762 4 + 4244037 -AC---------------TT----------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103628 4 + 4569836 -AC---------------TT----------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063963 19 - 159171411 -ACTTCTGGGGCCAGACGTT----------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786352 19 + 3513951 -ACTTCTGGGGCCAGATGTT----------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835285 19 + 1920343 -ACTTCTGGGGCCAGATGTT----------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950114 19 - 7032639 -ACTTCTGGGGCCAGATGTT----------------- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22773360 4 + 28711273 -GC---------------TT----------------- i otoGar3.GL873537 C 0 I 15 s mm10.chr11 22041609 4 - 122082543 -AC---------------TC----------------- i mm10.chr11 I 17 C 0 s dasNov3.JH570468 356984 22 - 852752 GAC---------------TTCTGAACCAGGACACCTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35877953 19 - 65901067 I e canFam3.chr9 21395935 1389 + 61074082 I a score=899386.000000 s hg38.chr17_GL383564v2_alt 58564 65 + 133151 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC s panTro5.chr17 16245153 65 + 83181570 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152638 65 + 83442489 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987660 65 + 4267968 CAAGGTCCCTATGTTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968055 65 - 2193130 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040617 65 - 77216781 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953225 65 - 80997621 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009468 65 + 10377808 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTGTTGCC------------TGGAAGAGAGGAGAAAGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896585 65 - 8458610 CCAGGTCCCTGTGGTTCTTTCATGGTCCTAGGGACCTACTATTGCC------------TGGAAGAGAAGAGAAAGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852323 65 + 75148670 CAAGGTCCCTATGGTTCTTTCATGGCGCTAGGGACCTACTATTGCC------------TGGAAGAGAGGAGAAAGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075766 65 + 4244037 CAAGGTCCCTGTGGTTCTTTCATGGTCCTAGGGACCTACTATTGCC------------TGGAAGAGAAGAGAAAGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103632 65 + 4569836 CAAGGTCCCTATGGTTCTTTCATGGCCCTAGGGACCTACTATTGCC------------TGGTAGAGAGGAGCAAGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46063982 65 - 159171411 CAAGGTCCCTGTGGTTCTTTTATGGTCCTAGGGACCTAACATTGCC------------TGATAGGGAGGAGAAAGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786371 65 + 3513951 CAAGGTCCCTGTGTTTCTTTTATGGTCCTAGGGACCTAATATTGCC------------TGGAAGGGAGGAGAAAGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835304 65 + 1920343 CAAGGTCCCTGTGGTTCTTTCATGGTCCTAGGGACCTAATATTGCC------------TGGAAGGGAGGAGAAAGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950133 65 - 7032639 CAAGGTCCCTGTGGTTCTTTTACAGTCCTAGGGACCTAATATTGCC------------TGGAAGGGAGGAGAAAGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35877972 65 - 65901067 CAAGCCCCCTATGGCTCTTCCATGGCCATACGGGCCTAACGCTGCC------------TGGAAGGGAGGAGGAAGCC i micMur3.chr16 I 19 C 0 s otoGar3.GL873537 22773379 65 + 28711273 CAAGGCGTCTGTGGCTATTTCATGGCCATATGGGCCTCATGTTGCC------------CGGAAAAGAAGAGGAATTC i otoGar3.GL873537 I 15 C 0 s mm10.chr11 22041613 77 - 122082543 CCAAACCTTGGTGGTTCTGTCATGGCTCTGTGGGTCTAATGTGGCCTGGAAGGGCAGGTGGAAGGGATGAGAAAGAT i mm10.chr11 C 0 C 0 s dasNov3.JH570468 357006 65 - 852752 TAAGACCCTGGTAGCTCTTTCATGGCCCTATGAACCTAATGTGACC------------TGGAAGAGAGCAGACAGCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I a score=51998.000000 s hg38.chr17_GL383564v2_alt 58629 10 + 133151 ATTTCTCTCT s panTro5.chr17 16245218 10 + 83181570 ATTTCTCCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152703 10 + 83442489 ATTTCTCCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987725 10 + 4267968 ATTTCTCCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968120 10 - 2193130 ATTTCTTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46064047 10 - 159171411 ATTTCTCTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786436 10 + 3513951 ATTTCTCTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835369 10 + 1920343 ATTTCTCTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950198 10 - 7032639 ATTTCTCTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878037 10 - 65901067 ATTTCTCTCT i micMur3.chr16 C 0 I 4 s otoGar3.GL873537 22773444 10 + 28711273 ACTTCTCCCT i otoGar3.GL873537 C 0 I 4 s mm10.chr11 22041690 10 - 122082543 ATGTCTTCCT i mm10.chr11 C 0 I 5 s dasNov3.JH570468 357071 10 - 852752 ACATCCCTCT i dasNov3.JH570468 C 0 I 4 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I e macNem1.NW_012014910v1 2009533 0 + 10377808 C e colAng1.NW_012122154v1 2103697 0 + 4569836 C e manLeu1.NW_012106252v1 2075831 0 + 4244037 C e chlSab2.chr16 64852388 0 + 75148670 C e cerAty1.NW_012006043v1 1896650 0 - 8458610 C e rheMac8.chr16 30040682 0 - 77216781 C e macFas5.chr16 27953290 0 - 80997621 C a score=1393919.000000 s hg38.chr17_GL383564v2_alt 58639 118 + 133151 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATTAGTTTCAA-----ATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------TTTTTTTGGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA s panTro5.chr17 16245228 117 + 83181570 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATTAGTTTCAA-----ATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------TTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152713 117 + 83442489 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATTAGTTTCAA-----ATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------TTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987735 117 + 4267968 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATTAGTTTCAA-----ATAGGGAACTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------TTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACGAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968130 117 - 2193130 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ATAGAGAACTAGACTCACGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040682 117 - 77216781 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTAGACTCATGAGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953290 117 - 80997621 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009533 117 + 10377808 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896650 117 - 8458610 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTAGATTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852388 117 + 75148670 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTAGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075831 117 + 4244037 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTAGATTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103697 117 + 4569836 ATTTCTCCTCCTAGGGCTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGACCTGGACTCATGTGCTGCCTGCTCTTTGGTCTATACTGGT--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064057 115 - 159171411 TTTACCTCTCTTAGGGTTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGATCCAGACTTATGGGCTGCCTGCTGTTCAGTCTATACTAGT--------CTTTTC-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAAC--CACGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786446 117 + 3513951 TTTTCTCCTCTTAGGGTTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGATCCAGACTTATGGGCTGCCTGCTCTTCAGTCTACACTAGT--------CTTTTC-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACACGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835379 117 + 1920343 TTTTCTCCTCTTAGGGTTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGATCCAGGCTTATGGGCTGCCTGCTCTTCAGTCTATACTAGT--------CTTTTC-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACATGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950208 117 - 7032639 TTTTCTCCTCTTAGGGTTGGTT-AT-GTAAAATCAGTTTCAA-----ACAGAGATCCAGACTTATGGGCTGCGTGCCCTTCAGTCTACACTAGA--------CTTTTT-GGAAGTGTTT--------------------------------------------------------------------------------------------------CTTAAACCACACGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878051 109 - 65901067 ATTTCTCCTCTTAAGGCTGGCT-TA-GGAACGTCAGTTTCAA-----ACAGGGATCCACGCTCATGTATGGCCTGCTCTTTAGTCCACATGGGT--------CTTTCT-GGAGGGGCTT--------------------------------------------------------------------------------------------------CTTAA--------A i micMur3.chr16 I 4 C 0 s otoGar3.GL873537 22773458 115 + 28711273 ATTTCTCCTCTTAAGGCAGGCTGTG-TTAACTACAGTTAACACAGTTACAGGGGTCCACACCCATATACTCCCTCCTCTTCAGTCTATACTGGT--------CTTTCT-GGAAGGGCTT--------------------------------------------------------------------------------------------------CTTAA--------A i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22041705 215 - 122082543 ATGTCTTCTCCTGAGTGTGGCT-ATAAAAAAAAAAGCTTCAA-----ATAGGTATTCAGACC---------CTAGCCCTTCAGTTGATATGGTTGACTCTCCTGTATT-GGAAGTGCTTGGGACTGGAAGTATTACTTGGTTGGCTTTCCTTCTGAGTTGTGGAATATTTGAATATTCATAATAAGCTATCTTGGCACTCCCCATACACGGAGACCCCCTAAAGCACAAAA i mm10.chr11 I 5 I 135 s dasNov3.JH570468 357085 116 - 852752 ATTGCTCCACTCATGTCTGATT-AT-GTAAAATCCGTTTCAA-----ACAGGGATCCAGACTCATGTGCCACCTGCTTTTCTGTCTATATTGGT--------CTTTCT-GGAAGGGCTT--------------------------------------------------------------------------------------------------CTAAAACCCCAAA- i dasNov3.JH570468 I 4 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I a score=2041163.000000 s hg38.chr17_GL383564v2_alt 58757 177 + 133151 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGGTGGTATATTAGCTAACAAAACCGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAA s panTro5.chr17 16245345 177 + 83181570 TTCAGAGGTT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGGTGGTATATTAGCTAACAAAACCGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16152830 177 + 83442489 TTCAGAGGTT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGGTGGTATATTAGCTAACAAAACCGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3987852 177 + 4267968 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGGTGGTATATTAGCTAACAAAACTGAGAACACAGTGAGAGACTTCATCTCATGTGTGCCTGTGGGCTCCTCGTGGTGTTA-GGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968247 178 - 2193130 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGGTGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCATGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTTCAGCCTATCCATGGACAGCTTGACTGAAGCATATGGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040799 178 - 77216781 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953407 178 - 80997621 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGATGGTTTATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009650 178 + 10377808 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896767 178 - 8458610 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTTTAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852505 178 + 75148670 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2075948 178 + 4244037 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGATGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGGGGGCTCCTCGTGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCATGGACAGCTTGACTGAAACATATGGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103814 178 + 4569836 TTCAGAGATT----------------------GAAATGGAT------------------------------------------TGTTCTT-------------------------TGGGA----ATTGATTTGGTGGTATATTAGCTAACAAAACTGAGAGCACAGTGAGACACTTCATCTCATGCGTGCCTGTGGGCTCCTCATGGTGTTAGGGTGAGTCAGGGAACCTCTCCAGCCTCTCCACGGACAGCTTGACTAAAACATATGGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064172 178 - 159171411 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TGGGA----ACTGATTTGGTGGTATACTAGCTAACAAAATTGATAGCACAGCGAGAGACTTCATCTCATGAGTGCCCATGGGCTCCTTGTGGTGTCAGAGCGAGTCAGGGAACCTCTTCATTCTATCCACGCACAGCTTGAGGGAAACATGTGGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786563 178 + 3513951 TCCAGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TGGGA----ACCGATTTGGTGGTATATTAGCTAACAAAATTGATAGCACAGCGAGAGACTTCATCTCATGAGTGCCCCTGGGCTTCTTGTGGTGTCAGGGCGAGTCAGGGAACCTCTCCATTCTATCCATGCACAGCTTGAGGGAAACGTGTAGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835496 178 + 1920343 TTCAGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TGGGA----ACTGATTTGGTGGTATATTAGCTAACAAAATTGACAGCACAGTGAGAGACTTCATCTCACGAGTGCCCCTGGGCTCCTTGTGGTGTCAGGGTGAGTCAGGGAACCTCTCCATTCTATCCATGCACAGCTGGAGGGAAACATGTGGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950325 142 - 7032639 TTTGGAGATT----------------------GAAATGAAT------------------------------------------TCTTCTT-------------------------TGGGA----ACTGATTTGGTGATATATTAGCTAACAAAATTGATAGCACAGCGAGAGACTTCATCTCATGAGTGCCCATGGGCTCCTTGTGGTGTCAGG------------------------------------GCTTGAGAGAAACATGTGGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878160 167 - 65901067 TTCAGAGATT----------------------GGAATTAGT------------------------------------------TCTTTTT-------------------------TAGGAATAGATTGATCCAATGGTATATTAACCAGCAAAATTGAGAGCAGAGTGAGAGA---CATCTCATGAGTGCTTG------------GGTGTTGGGGTGAGTCAGGGGACTTCTCCAACCTATCTGTGCATAGCTCGAGGGAAACATATGGAA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773573 164 + 28711273 TTCAGAAATT----------------------GAAATTA----------------------------------------------TTTTT-------------------------AAGGAATGGATTAGTTTGGTGATATATTTTCCAACAAAATTGAGAGCAGAGTGAGAGA---CATGTCATGTGTCCATG-----------TGGTGCTAGGGTGAGTTAGGGGATCTCTCCAGCCTGTCTGGGTATAGCTTGAGGGAAACATGTGGAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042055 253 - 122082543 TTCAAAGACTTTCAGATTTTGAAGCATTTTAGGAATTGGATCTTCTGGTTAGAGATGTTCAATCTCTATCAGGGTTTCTAGAATGTTCTTTTTATAAAACTCCCAAATCCAGAGATGGGAACGGATTGACTTGGTGCTATACTAATCAATAACATCAAGAACAGACTGAG-GGTTCCACCTTATGGGAGTCTGCGGGC----------ATAAGG--GAGTCA-AGCCCTCCCCCAGCTGATCCACACATAGCAAGAAAAGAACA----GAA i mm10.chr11 I 135 I 25861 s dasNov3.JH570468 357201 152 - 852752 TTCAGAGATT----------------------GAAATCAAT------------------------------------------TGTTCCT--------------------------GGGA-----------------------------CAAAACTGAAAGGAGACTAAGAGACTCCCTCTCCCAAATCCCTGTGGGAGACTTCTGGTATTAGGGTGATTTGGGAGGCCTCTTCAGCCCACCCCTTCAAAGCTTGAGGGAAACATATAAAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I a score=909399.000000 s hg38.chr17_GL383564v2_alt 58934 76 + 133151 ----GAGAA-GAGGCAGAAAACTGT--AAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG s panTro5.chr17 16245522 78 + 83181570 ----GAGAA-GAGGCAGAAAACTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153007 78 + 83442489 ----GAGAA-GAGGCAGAAAACTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988029 78 + 4267968 ----GAGAA-GAGGCAGAAAACTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968425 78 - 2193130 ----GAGAA-GAGGCAGAAAATTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30040977 78 - 77216781 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953585 78 - 80997621 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009828 78 + 10377808 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1896945 78 - 8458610 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTCAAGAAGAT-TCAGGTCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852683 78 + 75148670 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTCAAGAAGAT-TCAGGCCAGTTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076126 78 + 4244037 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAACAACACATGAGAGGGGAAGGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2103992 78 + 4569836 ----GAGAA-GAGGCAGAAAGCTGTGTAAGTTGGAGAAGAT-TCAGGTCAGTTCTA-CCCAAACAACACATGAGAAAGGAAGGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064350 78 - 159171411 ----GAGAA-GAGGCAGAAAATGGTGTAAGCTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAGCAACACATAATAGAGGAAGGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786741 78 + 3513951 ----GAGAA-GAGGCAGAAAATGGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAGCAGCACATAATAGAGGAAGGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835674 78 + 1920343 ----GAGAA-GAGGCAGAAAATGGTGTAAGTTCAAGAAGAT-TCAGGCCAATTCTA-CCCAAGCAACACATAATAGAGGAAGGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950467 59 - 7032639 ----GAGAA-GAGGC-------------------AGAAGAT-TCAGGCCAATTCTA-CCCAAGCAACACATAATAGAGGAAGGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878327 68 - 65901067 ----GGGAA-GAGGCAGAAATCGGTGCAAGTTCAAAAAGAT-CCAGGG-----------CAAGCAAGACACTAGAGAGGAAGGTG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773737 79 + 28711273 ----GAAAATGAGGCAGAAAATGGCATAAGTTCAAAAAGCT-TCAGGTGAATTCTA-CCCACATGAGACACAGAAGAAGAAAGGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22068169 77 - 122082543 ----AAATA-GAAGGAGACAGTTATAAAAACT--AGTATCTGTCATGCCTAGTTAT-CCAACAAAGCAAACCAAAGCAGAGTCTG i mm10.chr11 I 25861 C 0 s dasNov3.JH570468 357353 63 - 852752 GAGAGAGAA-CAGGCTGGAAG---------------------CCAAGCCAATCTCATCCCAAACAAGACATGGGACAGGAAGGTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21395935 1389 + 61074082 I a score=21000.000000 s hg38.chr17_GL383564v2_alt 59010 1 + 133151 G s panTro5.chr17 16245600 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153085 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988107 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968503 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041055 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953663 1 - 80997621 G i macFas5.chr16 C 0 I 14131 s macNem1.NW_012014910v1 2009906 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897023 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852761 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076204 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104070 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064428 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786819 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835752 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950526 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878395 1 - 65901067 G i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773816 1 + 28711273 G i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22068246 1 - 122082543 G i mm10.chr11 C 0 I 8 s canFam3.chr9 21397324 1 + 61074082 G i canFam3.chr9 I 1389 C 0 s dasNov3.JH570468 357416 1 - 852752 G i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=74271.000000 s hg38.chr17_GL383564v2_alt 59011 5 + 133151 TTTTC s panTro5.chr17 16245601 5 + 83181570 TTTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153086 5 + 83442489 TTTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988108 5 + 4267968 TTTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968504 5 - 2193130 TTTTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041056 5 - 77216781 TTTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967795 5 - 80997621 TTTTT i macFas5.chr16 I 14131 C 0 s macNem1.NW_012014910v1 2009907 5 + 10377808 TTTTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897024 5 - 8458610 TTTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852762 5 + 75148670 TTTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076205 5 + 4244037 TTTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104071 5 + 4569836 TTTTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064429 5 - 159171411 TTTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1786820 5 + 3513951 TTTTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835753 5 + 1920343 TTTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950527 5 - 7032639 TTTTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878396 5 - 65901067 GCTTC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773817 5 + 28711273 TCTTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22068255 5 - 122082543 TGCTC i mm10.chr11 I 8 T 12348 s canFam3.chr9 21397325 5 + 61074082 TTTTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357417 5 - 852752 GCTTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=271468.000000 s hg38.chr17_GL383564v2_alt 59016 29 + 133151 TTTCCTGACTTAT-CCTCCCACTCCG---ACAC s panTro5.chr17 16245606 29 + 83181570 TTTCCTGACTTAT-CCTCCCACTCCG---ACGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153091 29 + 83442489 TTTCCTGACTTAT-CCTCCCACTCCG---ACGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988113 29 + 4267968 TTTCCTGACTTAT-CCTCCCACTCCA---ACGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968509 29 - 2193130 TTTCCTGACTTAT-CCTCCCACTTCG---ACGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041061 29 - 77216781 TTTTCTGACTTAT-CCTCCCACTCTG---ATTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967800 31 - 80997621 TTTTTTGACCTCT-TTTGAC-CTCTGGCTGTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009912 29 + 10377808 TTTTCTGACTTAT-CCTCCCACTCTG---ATGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897029 29 - 8458610 TTTTCTGACTTAT-CGTCCCACTCTG---ATGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852767 29 + 75148670 TTTTCTGACTTAT-CCTCCCACTCTG---ATGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076210 29 + 4244037 TTTTCTGACTTAT-TGTCCCACTCTG---ATGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104076 29 + 4569836 TTTTCTGACTTAT-CCTCCCACTCCG---ATGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064434 29 - 159171411 TTTCCTGACCTAT-CCTCCCACTCCG---ATGT i calJac3.chr5 C 0 I 18600 s saiBol1.JH378271 1786825 29 + 3513951 TTTTCTGACTTAT-CCTCCCACTCCG---ATGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835758 29 + 1920343 TTTCCTGACTTAT-CCTCCCACTCCA---ATGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950532 29 - 7032639 TTTCCTGACTTAT-CCTCCCACTCCG---ATGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878401 27 - 65901067 CTTCCTAGCTCAT-CCTCCCATCTGT---GT-- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22773822 27 + 28711273 ATTCCTAGCTCAT-CCTCTGACCTGT---GT-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22055912 30 - 122082543 TTTCCTCTTTGATGCCTCTGACTTGA---CTAT i mm10.chr11 T 12348 I 2 s canFam3.chr9 21397330 29 + 61074082 TTTTTTCACTCCC-TTTGATCTTTCT---CTGT i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 357422 29 - 852752 ATTCCTGGAGCAT-CCTCCCGATCTG---ATCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=2787606.000000 s hg38.chr17_GL383564v2_alt 59045 165 + 133151 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT s panTro5.chr17 16245635 165 + 83181570 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGTTTGAAGAAGAACCATGAGGAGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153120 165 + 83442489 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGTTTGAAGAAGAACCATGAGGAGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988142 165 + 4267968 ----GTGCAGGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTAGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968538 165 - 2193130 ----ATGCAGGTACCAGACGGAGCAGTCCCTGAGGCGGCTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041090 165 - 77216781 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAGTCGGACATCAATAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967831 165 - 80997621 ----GTGCAGGTACCAGACGGAGCTGTCCCTGAGGCAGCTGGTGGAGTCTGACATCAACAGTCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAACTGCTGTCCCTCAAGCAGAACCATGAGCAGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2009941 165 + 10377808 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAGTCGGACATCAATAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897058 165 - 8458610 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCATGAGGAGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852796 165 + 75148670 ----GTGCAGGTACCAGACAGAGCAGTCCCTGAGGCAGCTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCTTGAAGAAGAACCATGAGGAGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076239 165 + 4244037 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATTTGCCTGAAGAAGAACCATGAGGAGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104105 165 + 4569836 ----ATGCAGGTACCAGACAGAGCAGTCCCTGAGGCGGCTGGTGGAGTCGGACATCAACAGCATACGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCCGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCTGATCTGCCTGAAGAAGAACCACGAGGAGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083063 165 - 159171411 ----GTACAGGTACCAGACTGAACTGTCCCTGCGGCAGCTGGTGGAGTCAGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTTTCCCTCAAGCAGAACCATGAGCAGGT i calJac3.chr5 I 18600 C 0 s saiBol1.JH378271 1786854 165 + 3513951 ----ATGCAGATACCAGACGGAACAGTCCCTGCGGCGGCTGGTGGAGTCGGACATCAACAGCATGCGCAGGATCCTGGATGAGCTGACCCTCTGCACGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAACCATGAGGAGGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835787 165 + 1920343 ----GTGCAGGTACCAGACGGAGCAGTCCCTGCGGCGGCTGGTGGAGTCGGACATCAACAGCATGCGCAGGATCCTGGATGAGCTGACCCTCTGCACGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAACCATGAGGAGGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950561 165 - 7032639 ----GTGCAGGTACCAGACGGAGCAGTCCCTGCGGCGGCTGGTGGAGTCGGACATCAACAGCCTGCGCAGGATCCTGGATGAGTTGACCCTCTGCACGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTGTGCCTGAAGAAGAATCATGAGGAGGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35878428 165 - 65901067 ----GTGCAGGTACGAGACGGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACAGCCTGCGCAGGGTCCTGGACGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTCTGCCTCAAGAAGAACCACGAGGAGGT i micMur3.chr16 C 0 I 784 s otoGar3.GL873537 22773849 164 + 28711273 ----GTGCAGGTACGAGACAGAGCGGTCCCTGAGGCAGCTGGTCGAGTCGGACATCAACAGCCTTCGCAGGATCCTGGATGAGCTGACTCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTCTGCCTCAAGAAGAACCATGAGGAGG- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22055944 165 - 122082543 ----GCGCAGGTATGAGTCAGAGCTGTCCCTGCGGCAGCTGGTGGAGTCAGACCTCAATGGCCTGCGCAGGATCCTGGACGAACTGACCCTCTGCAAGTCTGATCTGGAGGCACAGGTGGAGTCCCTGAGGCAGGAGCTGCTGTGTCTCAAGCAAAACCATGAGGAGGT i mm10.chr11 I 2 C 0 s canFam3.chr9 21397361 165 + 61074082 ----GTGCAGGTACCAGACAGAGTTGGGCTTGCGGCAGCTGGTAGAGTCGGACATTAACGGCCTGCGCAGGATCTTGGATGAGTTGACTCTGTGCAAGTCCGACCTGGAGGCCCAGGTTGAGTCCCTGAAGGAGGAGTTGCTGAGTCTCAAGCAGAACCATGAGCAGGT i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 357451 169 - 852752 GTGCTTACAGGTATGAGATGGAGCTGTCCCTGCGGCAGCTGGTGGAGGCTGATCTCAACAGCCTGCGCAGGATCCTGGACAACCTGACCCTGTGCAAGTCTGACTTGGAGGCCCAGGTGGAGTCTCTGAGAGAGGAGCTGCTGTGCCTCAAGAAGAACCATGAGGAGGT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=12778.000000 s hg38.chr17_GL383564v2_alt 59210 4 + 133151 ---ATGA--------------- s panTro5.chr17 16245800 4 + 83181570 ---ATGA--------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153285 4 + 83442489 ---ATGA--------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988307 4 + 4267968 ---ATGA--------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968703 4 - 2193130 ---ATGA--------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041255 4 - 77216781 ---ATGA--------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967996 4 - 80997621 ---AAGA--------------- i macFas5.chr16 C 0 T 14133 s macNem1.NW_012014910v1 2010106 4 + 10377808 ---ATGA--------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897223 4 - 8458610 ---ATGA--------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852961 4 + 75148670 ---ATGA--------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076404 4 + 4244037 ---ATGA--------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104270 4 + 4569836 ---ATGA--------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083228 4 - 159171411 ---GAGA--------------- i calJac3.chr5 C 0 T 18600 s saiBol1.JH378271 1787019 4 + 3513951 ---AGGA--------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835952 4 + 1920343 ---AGGA--------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950726 4 - 7032639 ---ATGA--------------- i aotNan1.NW_018502359v1 C 0 I 1 s otoGar3.GL873537 22774013 3 + 28711273 ----TGA--------------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22056109 4 - 122082543 ---AAGA--------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21397526 2 + 61074082 -----GA--------------- i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 357620 22 - 852752 GAGAGGAGAAAGGGGaaaaaaa i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=32262.000000 s hg38.chr17_GL383564v2_alt 59214 2 + 133151 AA s panTro5.chr17 16245804 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153289 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988311 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968707 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041259 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953867 2 - 80997621 AA i macFas5.chr16 T 14133 C 0 s macNem1.NW_012014910v1 2010110 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897227 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852965 2 + 75148670 AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076408 2 + 4244037 AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104274 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064632 2 - 159171411 AA i calJac3.chr5 T 18600 C 0 s saiBol1.JH378271 1787023 2 + 3513951 AA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835956 2 + 1920343 AA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950731 2 - 7032639 AA i aotNan1.NW_018502359v1 I 1 C 0 s otoGar3.GL873537 22774016 2 + 28711273 GA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22056113 2 - 122082543 AA i mm10.chr11 C 0 T 13516 s canFam3.chr9 21397530 2 + 61074082 AA i canFam3.chr9 I 2 T 19034 s dasNov3.JH570468 357642 2 - 852752 aa i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=290387.000000 s hg38.chr17_GL383564v2_alt 59216 26 + 133151 CAAATTCACAAAAGCAGGCCTCAGAA s panTro5.chr17 16245806 26 + 83181570 AAAATTCACAAAAGCAGGCCTCAGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153291 26 + 83442489 CAAATTCACAAAAGCAGGCCTCAGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988313 26 + 4267968 CAAATTCACAAAAGCAGGCCTCAGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968709 26 - 2193130 CAAATTCACAAGAGCAGGCCTCAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041261 26 - 77216781 CAAATTCACAAAAGCAGGCCTCAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953869 26 - 80997621 CAAATTCACAAAAGCAGGCCTCAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010112 26 + 10377808 CAAATTCACAAAAGCAGGCCTCAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897229 26 - 8458610 CAAATTCACAAAAGCAGGCCTCAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852967 26 + 75148670 CAAATTCACAAAAGCAGGCCTCAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076410 26 + 4244037 CAAATTCACAAAAGCAGGCCTTAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104276 26 + 4569836 CAAATTCACAAAAGCAGGCCTCAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064634 26 - 159171411 AAAATTTACAAAAGCAGGCCTCAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787025 26 + 3513951 AACATTTACAAAAGCAGGCCTCAGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835958 26 + 1920343 AAAATTTGCAAAAGCAGGACTCAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950733 26 - 7032639 AAATTTTACAAAAGCAGGCCTCAGAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774018 26 + 28711273 AGACATGAGACATGCAGGACTCCAAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21378498 22 + 61074082 AAAAT----AAAAGTAATCTTTAGAG i canFam3.chr9 T 19034 C 0 s dasNov3.JH570468 357644 26 - 852752 aaaaaaaaaaaaaGTAGGCTTCAGAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22056115 13516 - 122082543 T e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=1012540.000000 s hg38.chr17_GL383564v2_alt 59242 89 + 133151 CTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGACCCTTCTCTGAGGAACTCAAGAT---GTTCTCAG s panTro5.chr17 16245832 89 + 83181570 CTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGATCCTTCTCTGAGGAACTCAAGAT---GTTCTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153317 89 + 83442489 CTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGATCCTTCTCTGAGGAACTCAAGAT---GTTCTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988339 89 + 4267968 CTAAGCTACTAGCACTGGG------------AATCAGGAGAGGATTACTGTCTGGATCCCTGGTCTGGGACCCTTCTCTGAGGAACTCAAGAT---GTTCTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968735 89 - 2193130 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGGTCTGGGACCCTTCTCTAAGGAACTCAAGGT---ATTCTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041287 89 - 77216781 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGGT---ATTCTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953895 89 - 80997621 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGGT---ATTCTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010138 89 + 10377808 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGGT---ATTCTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897255 89 - 8458610 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGAT---ATTCTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64852993 89 + 75148670 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGGT---ATTCTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076436 89 + 4244037 CTAAGCTACTAGCACTGGG------------AATCAGGAGATGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGAT---ATTCTCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104302 89 + 4569836 CTAAGCTACTAGTACTGGG------------AATCAGGAGACGATTACTGTCTGGATCCCTGTTCTGGGACCCTTCTCTGAGGAACTCAAGGT---ATTCTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064660 89 - 159171411 CTAAGCTACTAGCATTGGG------------AATCAGGAGACAATTACTGTCTGGATCTCTGGTCTGGGACCCTTCTCTGAAGACCTCAAGGT---ATTCTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787051 89 + 3513951 CTAAGCTACTAGCACTGGG------------AATCAGAAGACAATCACTGTCCGGATCTCTGGTCTGGGACCCTTCTCTGAAGAACCCAAGCT---ATTCTCGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1835984 89 + 1920343 CTAAGCTACTAGCACTGGG------------AATCAGGAGACAATTACTGCCTGGATCTCTGGTCTGGGACCCTTCTCTGAAGAACTCAGGGT---ATTCTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950759 89 - 7032639 CTAAGCTACTAGCACTGGG------------AATCAGGAGACAATTACTGTCTGGATCTCTGGTCTGGGACCCTTCCCTGAAGAACTCAAGGT---ATTCTCAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774044 35 + 28711273 CTGAGCT-----------------------------------------TGT---------TGGTGTGGGG----------------TCAGGAG---GCTGTCAA i otoGar3.GL873537 C 0 T 13358 s mm10.chr11 22042599 103 - 122082543 TGACACCTTTAGCATCCAGAGAGGCTTCCCAAATCAGGAGGTACCAGCTGCCAGGGTACATGATGTGGG-CCATTCCCTGAAGGCCTCTAAGCTAAGGACCCAG i mm10.chr11 T 13516 I 1 s canFam3.chr9 21378520 84 + 61074082 CCAAGCCTTTAGCATCGGC------------AAGTGGGAGGCAATTACCATCAAGCTTCTTGGGCTGGGATCCTTCTCTGAAGAACTCAAAAT--------CAG i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 357670 59 - 852752 CTAAGCCTTTAGCATTGGG------------AGCCAGGAG------------------------------CCCTTCTCTGAAGAACTTAAGGT---TATCTCAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=100794.000000 s hg38.chr17_GL383564v2_alt 59331 7 + 133151 AGAGTGA s panTro5.chr17 16245921 7 + 83181570 AGAGTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153406 7 + 83442489 AGAGTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988428 7 + 4267968 AGAGTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968824 7 - 2193130 AGAGTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041376 7 - 77216781 AGAGTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953984 7 - 80997621 AGAGTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010227 7 + 10377808 AGAGTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897344 7 - 8458610 AGAGTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853082 7 + 75148670 AGAGTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076525 7 + 4244037 AGAGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104391 7 + 4569836 AGAGTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064749 7 - 159171411 AGAGTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787140 7 + 3513951 AGAGTAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836073 7 + 1920343 AGAGTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950848 7 - 7032639 AGAGTGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760721 7 + 28711273 AGAATGA i otoGar3.GL873537 T 13358 C 0 s mm10.chr11 22042703 4 - 122082543 ---AGGA i mm10.chr11 I 1 I 3 s canFam3.chr9 21378608 7 + 61074082 AGAATGA i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 357729 7 - 852752 AGAAGGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=309676.000000 s hg38.chr17_GL383564v2_alt 59338 27 + 133151 CGG-TGCTACATCCATATCAAGGAGTGG s panTro5.chr17 16245928 27 + 83181570 TGG-TGCTACATCCATATCAAGGAGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153413 27 + 83442489 TGG-TGCTACATCCATATCAAGGAGTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988435 27 + 4267968 TGG-TGCTACATCCATATCAAGGAGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968831 27 - 2193130 TGG-TGCTACATCCATATCAAGGAGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041383 27 - 77216781 TGG-TGCTACATCCATATCAAGGAGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27953991 28 - 80997621 TGGTTTCTACATCCATATCAAGGAGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010234 27 + 10377808 TGG-TGCTACATCCATATCAAGGAGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897351 27 - 8458610 TGG-TGCTACATCCATATCAAGGAGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853089 27 + 75148670 TGG-TGCTACATCCATATCAAGGAGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076532 27 + 4244037 TGG-TGCTACATCCATATCAAGGAGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104398 27 + 4569836 TGG-TGCTACATCCATATCAAGGAGTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064756 27 - 159171411 AGG-TGCTACATCCATATCGAGGAGTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787147 27 + 3513951 AGG-TGCTACATCCATATCAAGGAGTGA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6950855 27 - 7032639 AGG-TGCTACATCCATATCAAGGTGTGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760728 27 + 28711273 CAA-TGCTAGACCCAGATGGAGGAGTGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22042710 27 - 122082543 TAC-CACTGTATCCTTACAGAGGAGTGT i mm10.chr11 I 3 C 0 s canFam3.chr9 21378615 27 + 61074082 TCA-TGGTATAGCCATAGCATGGAATGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357736 27 - 852752 TGA-TGCTATATCCGTATTAAGGAGCCA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e cebCap1.NW_016107730v1 1836080 0 + 1920343 C a score=271135.000000 s hg38.chr17_GL383564v2_alt 59365 22 + 133151 AGTGAGCTGCTCATTCTTCAGC s panTro5.chr17 16245955 22 + 83181570 AGTGAGCTGCTCATTCTTCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153440 22 + 83442489 AGTGAGCTGCTCATTCTTCAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988462 21 + 4267968 A-TGAGCTGCTCATTCTTCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968858 22 - 2193130 AGTGAGCTGCTCATTCTCCAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041410 22 - 77216781 AGTGAGCTGCTCATTCTCCAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954019 22 - 80997621 AGTGAGCTGCTCATTCTCCAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010261 22 + 10377808 AGTGAGCTGCTCATTCTCCAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897378 22 - 8458610 TGTGAGCTGCTCATTCTCCAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853116 22 + 75148670 AGTGAGCTGCTCATTCTCCAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076559 22 + 4244037 TGTGAGCTGCTCATTCTCCAGT i manLeu1.NW_012106252v1 C 0 I 2 s colAng1.NW_012122154v1 2104425 22 + 4569836 AGTGAGCTGCTCATTCTCCAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064783 22 - 159171411 AGTGAGCTGCTCATTCTCCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787174 22 + 3513951 AGTGAGCTCCTCATTCTCCAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836080 22 + 1920343 AGTGAGCTGCTCATTCTCCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950882 22 - 7032639 AGTAAGCTGCTCATTCTCCGGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760755 21 + 28711273 -GTGATCTGCTAACTGTCAAGC i otoGar3.GL873537 C 0 I 13303 s mm10.chr11 22042737 22 - 122082543 GGTGAACTGTGGATGCTGTGGC i mm10.chr11 C 0 I 4 s canFam3.chr9 21378642 22 + 61074082 GGTGGGGTCCATATTCTCAAGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357763 22 - 852752 GGTGAATTGCTAATTCTCAAGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=16511.000000 s hg38.chr17_GL383564v2_alt 59387 1 + 133151 G s panTro5.chr17 16245977 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153462 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988483 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968880 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041432 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954041 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010283 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897400 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853138 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076583 1 + 4244037 G i manLeu1.NW_012106252v1 I 2 C 0 s colAng1.NW_012122154v1 2104447 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064805 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787196 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836102 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950904 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774079 1 + 28711273 G i otoGar3.GL873537 I 13303 C 0 s mm10.chr11 22042763 1 - 122082543 G i mm10.chr11 I 4 C 0 s canFam3.chr9 21378664 1 + 61074082 G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357785 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=67563.000000 s hg38.chr17_GL383564v2_alt 59388 5 + 133151 GCTGG s panTro5.chr17 16245978 5 + 83181570 GCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153463 5 + 83442489 GCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988484 5 + 4267968 GCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968881 5 - 2193130 GCTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041433 5 - 77216781 GCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954042 5 - 80997621 GCTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010284 5 + 10377808 GCTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897401 5 - 8458610 GCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853139 5 + 75148670 GCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076584 5 + 4244037 GCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104448 5 + 4569836 GCTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064806 5 - 159171411 GCTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787197 5 + 3513951 GCTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836103 5 + 1920343 GCTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950905 5 - 7032639 GCTGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774080 5 + 28711273 GCTGG i otoGar3.GL873537 C 0 T 13281 s mm10.chr11 22042764 1 - 122082543 G---- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 357786 5 - 852752 GCTGG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e canFam3.chr9 21378665 0 + 61074082 C a score=111004.000000 s hg38.chr17_GL383564v2_alt 59393 10 + 133151 GTGAGGGT-TA s panTro5.chr17 16245983 10 + 83181570 GTGAGGGT-TA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153468 10 + 83442489 GTGAGGGT-TA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988489 10 + 4267968 GTGAGGGT-TA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968886 10 - 2193130 GTGAGGGT-TA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041438 10 - 77216781 GTGAGGGT-TA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954047 10 - 80997621 GTGAGGGT-TA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010289 10 + 10377808 GTGAGGGT-TA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897406 10 - 8458610 GTGAGGGT-TA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853144 10 + 75148670 GTGAGGGT-TA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076589 10 + 4244037 GTGAGGGT-TA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104453 10 + 4569836 GTGAGGGT-TA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064811 10 - 159171411 CTGAGGGT-TA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787202 10 + 3513951 CTGAGGGT-TA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836108 10 + 1920343 CTGAGGGG-TA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950910 10 - 7032639 CTGAGAGT-TA i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22042765 9 - 122082543 --GGGAGTGTA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 357791 10 - 852752 GTGAGGGT-TG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e canFam3.chr9 21378665 0 + 61074082 C e otoGar3.GL873537 22774085 13281 + 28711273 T a score=505529.000000 s hg38.chr17_GL383564v2_alt 59403 42 + 133151 GGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgag s panTro5.chr17 16245993 42 + 83181570 GGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153478 42 + 83442489 GGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988499 42 + 4267968 GGCAGGTGTTG--GAATTACTGAGGAGGGACA-TCattcattgag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968896 42 - 2193130 GGCAACTGTTG--GAATTACTGAGGAGGGACA-Tcattcattgag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041448 42 - 77216781 GGCAGGTGTTG--GAATTACTGAGGGGGGGCA-TCattcattgag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954057 42 - 80997621 GGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCATTCATTGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010299 42 + 10377808 GGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCattcattgag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897416 42 - 8458610 GGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCattcattgag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853154 42 + 75148670 GGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCATTCATTGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076599 42 + 4244037 GGCAGGTGTTG--GAATTACTGAGGAGGGGCA-TCattcattgag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104463 42 + 4569836 GGCAGGTGCTG--GAATTACTGAGGAGGGGCA-TCattcattgag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064821 42 - 159171411 GGCAGGCGCTG--GAACTGCTGAGGATGGACA-Tcattcactgag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787212 42 + 3513951 GGCAGGTGCTG--GAATTGCTGAGGATGGACA-TCATTCATTGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836118 42 + 1920343 GGCAGGTGCTG--GGATTGCTGAGGATGGACA-Tcattcattgag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950920 42 - 7032639 GGCAGGTGCTG--GAATTGCTGAGGATGGACA-TCAATCATTGAG i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22042774 42 - 122082543 GGCAGCTGCTA--GAGATAGTGAGCTGGGTGT-CTGTCCACTGAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21378665 43 + 61074082 GGCTGGTGTTG--GAGATGCTGAAGAAGGGCACTCATTTATTGGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357801 39 - 852752 GACAGTTGTTGTAGAAATGCTGAGGAAGAACA-TT-----TTGAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e otoGar3.GL873537 22774085 13281 + 28711273 T a score=1303956.000000 s hg38.chr17_GL383564v2_alt 59445 102 + 133151 ccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-aaaagagctcacagt s panTro5.chr17 16246035 102 + 83181570 ccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aagtaaga-----catggcccttttctt-aaaagagctcacagt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153520 102 + 83442489 ccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aagtaaga-----catggcccttttctt-aaaagagctcacagt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988541 102 + 4267968 ccctgctctctgctgat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-aaaagagctcacagt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1968938 102 - 2193130 ccctgctctctgctgat---cactggtaggtcttgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-aaaagagctcacagt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041490 102 - 77216781 ccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954099 102 - 80997621 CCCTGCTCTCTGCTCAT---CACtgctaggtcctgaatttggtggtggagatggagagacaaaaaag-aaataaga-----catggcccttttctt-ctaagagctcacagt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010341 102 + 10377808 ccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagagacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897458 102 - 8458610 ccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853196 102 + 75148670 CCCTGCTCTCTGCTCAT---CACtgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076641 102 + 4244037 ccctgctctctgctcat---cactgctaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcacagt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104505 102 + 4569836 ccctgctctctgctcat---caccactaggtcctgaatttggtggtggagatggagggacaaaaaag-aaataaga-----catggcccttttctt-caaagagctcatagt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064863 102 - 159171411 ctctactctctaatggt---ta-tgttaggtcctaaatttgctagtagagatggagggataaaaatg-aaataaga-----catggccctgttcttccaaagagctcacagt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1787254 101 + 3513951 CTCTGCTCTCTGATGGT---CA-TGTTAGGTCCTAAATTTGCTAGTAGAGATGGAgggatacaaatg-aaataaaa-----catagcccttttctt-caaagagctcacagt i saiBol1.JH378271 C 0 M 415 s cebCap1.NW_016107730v1 1836160 101 + 1920343 ctctgctctctgatggt---ca-tgttaggtcctaaatttgctagtagggatggagggataaaaatg-aaataaga-----catagccgttttctt-caaagagctcacagt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6950962 101 - 7032639 CTCTGCTCTCTGATGAT---CA-TGTTAGGTTCTAAatttgctagtagagatggagggataaaaatg-aaataaga-----catggcccttttctt-caaagagctcacagt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760804 98 + 28711273 CTCAGCTCACTGCTGGT---CACtgttaagtcctgaatttgagggtggagatggaagaa-aaaaggg-aaataaga-----ca---cacctccctt-tcaggagctcacagt i otoGar3.GL873537 T 13281 C 0 s mm10.chr11 22042816 110 - 122082543 CTCCCATCTCTGCTGGTTGCTACCACTAGGTTCTGGAATTGATGGTGGAGATGGAgggttaaaaaaataaataaaagaattcatggctcctctct--ctaagaacttgcagc i mm10.chr11 C 0 C 0 s canFam3.chr9 21378708 99 + 61074082 CCCTGCTCTCTTCTTGT---CACTATTAATTTCTGAATTTGGTGGTAGaggtggagg---aaaaaag-aaataaga-----catgcaccctctttt-caatgagcgcccagt i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357840 98 - 852752 ACCTGGTCTCTGCTAGT---CACtgccaggtactgtatttggtggtggtaatggaggggacaaaaag-aaa-aaga-----ca-ggcccttctctt-caaaaagctct--gt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=555989.000000 s hg38.chr17_GL383564v2_alt 59547 49 + 133151 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacaga s panTro5.chr17 16246137 49 + 83181570 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153622 49 + 83442489 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacaga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988643 49 + 4267968 ctagtatagaaagacagtcatataaacacagtgatataa-acaagacaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969040 49 - 2193130 ctggtatagaaagatagtcatataaacacagtgatataa-acaagacaga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041592 49 - 77216781 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954201 49 - 80997621 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010443 49 + 10377808 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897560 49 - 8458610 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853298 49 + 75148670 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076743 49 + 4244037 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104607 49 + 4569836 ctagtatagaaagacagtcatataaacacagtgatgtaa-acaagacaga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46064965 49 - 159171411 ttattatggaaagacagccatgtaaatgcaatgatataa-acaagGCAGA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1836261 49 + 1920343 ttagtatggaaagacagcaatgtaaatgcagtgatataa-acaaggcaga i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951063 49 - 7032639 ttagtatggaaagacagccatgtaaacgcagtgatataa-acaaggcaga i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22760902 49 + 28711273 gtggcgtggagagataggcatgtacacacagtgacacaa-agaaggcagg i otoGar3.GL873537 C 0 I 13134 s mm10.chr11 22042926 49 - 122082543 ctagtgtggag-ggcagctatgGAGTCCTGATGATATAATGTAAGGCTGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21378807 49 + 61074082 ctagcctggggagatggccacgtaaagacaatgatataa-tacaggcaga i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 357938 50 - 852752 gttgtgtggagagacatccatgtaaacattttgacataacacaaggcaga i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e saiBol1.JH378271 1787355 415 + 3513951 M a score=20366.000000 s hg38.chr17_GL383564v2_alt 59596 2 + 133151 gt s panTro5.chr17 16246186 2 + 83181570 gt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153671 2 + 83442489 gt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988692 2 + 4267968 gt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969089 2 - 2193130 gt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041641 2 - 77216781 gt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954250 2 - 80997621 gt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010492 2 + 10377808 gt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897609 2 - 8458610 gt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853347 2 + 75148670 gt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076792 2 + 4244037 gt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104656 2 + 4569836 gt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065014 2 - 159171411 GT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1836310 2 + 1920343 gt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951112 2 - 7032639 gt i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22042975 2 - 122082543 GT i mm10.chr11 C 0 C 0 s canFam3.chr9 21378857 1 + 61074082 g- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 357988 2 - 852752 gt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e otoGar3.GL873537 22760951 13134 + 28711273 I e saiBol1.JH378271 1787355 415 + 3513951 M a score=423311.000000 s hg38.chr17_GL383564v2_alt 59598 39 + 133151 gaaacaagtaccatatgagatgtacaagcagtatgctct s panTro5.chr17 16246188 39 + 83181570 gaaacaagtaccatatgagatgtacaagcagtaagctct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153673 39 + 83442489 gaaacaagtaccatatgagatgtacaagcagtaagctct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988694 39 + 4267968 gaaacaagtaccatatgagatgtacaagcagtatgctct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969091 39 - 2193130 gaaacaagtaccatatgagatgtaaaagcagtatgctct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041643 39 - 77216781 gaaacaagtaccatttgagatgtacaagcagtatcctct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954252 39 - 80997621 gaaacaagtaccatttgagatgtacaagcagtatcctct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010494 39 + 10377808 gaaacaagtaccatttgagatgtacaagcagtatcctct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897611 39 - 8458610 gaaacaagtaccatttgagatgtacaagcagtatcctct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853349 39 + 75148670 gaaacaagtaccatttgagatgtacaagcagtatcctct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076794 39 + 4244037 gaaacaagtaccatttgagatgtacaagcagtatcctct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104658 39 + 4569836 gaaacaagtaccatatgagatgtacaagcagtatcctct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065016 39 - 159171411 GAAACAATTATCATATGAAATGTACAAGCAGTATGCTCT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1836312 39 + 1920343 gaaacaattaccatatgagatgtacaagcagtgtgctct i cebCap1.NW_016107730v1 C 0 I 345 s aotNan1.NW_018502359v1 6951114 39 - 7032639 gaaacaattaccatgtgagatgtacaagcagtatgctct i aotNan1.NW_018502359v1 C 0 I 339 s otoGar3.GL873537 22774085 39 + 28711273 GGAACAAGTGGCATGTGAGATGGCCCAGCAGCTTGCTCT i otoGar3.GL873537 I 13134 C 0 s mm10.chr11 22042977 28 - 122082543 GAAGCAAGAGCTGTGTGCTGTGCATGGT----------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21378858 39 + 61074082 aaaagaagtactatataagatgcacaagcagtatattca i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 357990 38 - 852752 gaaataagtttc-tgtgagatacatgagcagcacactct i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e saiBol1.JH378271 1787355 415 + 3513951 M a score=26832.000000 s hg38.chr17_GL383564v2_alt 59637 2 + 133151 ag s panTro5.chr17 16246227 2 + 83181570 ag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153712 2 + 83442489 ag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988733 2 + 4267968 ag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969130 2 - 2193130 ag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041682 2 - 77216781 ag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954291 2 - 80997621 ag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010533 2 + 10377808 ag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897650 2 - 8458610 ag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853388 2 + 75148670 ag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076833 2 + 4244037 ag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104697 2 + 4569836 ag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065055 2 - 159171411 AG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1836696 2 + 1920343 ag i cebCap1.NW_016107730v1 I 345 C 0 s aotNan1.NW_018502359v1 6951492 2 - 7032639 ag i aotNan1.NW_018502359v1 I 339 C 0 s otoGar3.GL873537 22774124 2 + 28711273 GG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043005 2 - 122082543 AG i mm10.chr11 C 0 C 0 s canFam3.chr9 21378897 2 + 61074082 gg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358028 2 - 852752 gg i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e saiBol1.JH378271 1787355 415 + 3513951 M a score=182438.000000 s hg38.chr17_GL383564v2_alt 59639 15 + 133151 aaataatccaggctg s panTro5.chr17 16246229 15 + 83181570 aaataATCCAGGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153714 15 + 83442489 aaataatccaggctg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988735 15 + 4267968 aaataatccaggctg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969132 15 - 2193130 aaataatccaggctg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041684 15 - 77216781 aaataatccaggctg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954293 15 - 80997621 aaataATCCAGGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010535 15 + 10377808 aaataATCCAGGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897652 15 - 8458610 aaataatccaggctg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853390 15 + 75148670 aaataATCCAGGCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076835 15 + 4244037 aaataATCCAGGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104699 15 + 4569836 aaataatccaggctg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065057 15 - 159171411 AAAGAGTCCAGTCTG i calJac3.chr5 C 0 I 315 s saiBol1.JH378271 1787786 15 + 3513951 AAATAATTCAGTCTG i saiBol1.JH378271 M 415 C 0 s cebCap1.NW_016107730v1 1836698 15 + 1920343 aaataaTTCAGTCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951494 15 - 7032639 aaataattcagtctg i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774126 14 + 28711273 GAGTGAACCAG-CTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043007 15 - 122082543 GAGGAAGTCCGACTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21378899 15 + 61074082 gaataatccagtcta i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358030 15 - 852752 gaAAAATCCAGTTTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=2986176.000000 s hg38.chr17_GL383564v2_alt 59654 243 + 133151 cccaagaggagata----gggaACTCTTCTCAGATGC----------AAAGAGGAGGATTCCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGG----ATGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCCG s panTro5.chr17 16246244 247 + 83181570 CCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTCCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGATGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153729 247 + 83442489 cccaagaggagata----gggaactcttctcagatgc----------aaagaggaggattccagta---cttgggtgtttcagtctgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGATGAAAGTGAAGATGTGATGGGAAGTGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988750 247 + 4267968 cccaagaggagata----gggaactcttctcagatgc----------aaagaggaggattccagta---cttgggtgtttcagtctgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGAG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGATGTGATGAAAGTGAAGATGTGATGGGAAGCGGGGAAGGACTTGCATATGCCAAGGAATTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969147 247 - 2193130 cccaagaggagata----gggaactcttctcagaTGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TACGGCT--GGGCATGCAGTACCTCCAAGGGTGTGATGACAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTGAGGTTGTTTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041699 244 - 77216781 cccaagaggagata----gggaactcttctcagatgc----------aaagaggaggatttcagta---cttgggtgtttcagtctgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGACGTGACGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954308 244 - 80997621 CCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGACGTGACGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010550 244 + 10377808 CCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGACGTGACGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897667 244 - 8458610 cccaagagcagata----gggaactcttctcagatgc----------aaagaggaggatttcagta---cttgggtgtttcagtttgagggaagaggttgaacaaagacacagaagtggcagggcaGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853405 244 + 75148670 CCCAAGAGGAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATGTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TATAAG---GTTTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2076850 244 + 4244037 CCCAAGAGCAGATA----GGGAACTCTTCTCAGATGC----------AAAGAGGAGGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATGTGATGGGAAGTGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACTTAGTCTTGTAGAAGG-TGTAAG---GTTTCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104714 244 + 4569836 cccaagaggagatg----gggaACTCTTCTCAGATGC----------AAAGAGGACGATTTCAGTA---CTTGGGTGTTTCAGTCTGAGGGAAGAGGTTGAACAAAGACACAGAAGTGGCAGGGCAGGGTGTATCTGGG-----------------TATGGCT--GGGCACGCAGTACCTCCAAGGGTGTGGTGAAAGTGAAGATCTGATGGGAAGCGAGGAAGGACTTGCATATGCCAAGGAGTTTAGACCTAGTCTTGTAGAAGG-TGTAAG---GTTTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065387 250 - 159171411 TCCAAGAGGAGATAGATGGGGAACTCTTCTCAGATGC----------AAAGGGGAGGATTTCAGTA---CTTGGGTGTTTCAGACTGAGGG-AAAGATTGAAAAAAGACACAGAAGTGGCAGAGCAGGGTATATCTGGA-----------------TATGGCT--GGGCATGCAGTACTTACAAGGGTGTGATGAAAGTGAAGATGTGATGGGACGTGATGAAGGACTTGCATATGCCAAGGAGTTTAGACTTGGTCTTGTAGAAGA-TGTGGGGTCGTTTCAG i calJac3.chr5 I 315 C 0 s saiBol1.JH378271 1787801 251 + 3513951 CCCAAGAGGAGATAGATGGGCAACTCTTCTCAGATGC----------AAAGAGAAGGATTTCAGTA---CTTGGGTGTTTCAGACTGAGGGAAAAGGTTGAACAAAGACACAGAAGTGGCAGAGCAGGGTATATCTGGG-----------------TATGGCT--GGGCATGCAGTACCTACAAGGGTGTGACGAAAGTGAAGATATGATGGGAAGCAATGAAGGACTTGCATATGCCAAGGAGTTTAGACTTGGTCTTGCAGAAGA-TGCGGGGTCGTTTCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836713 246 + 1920343 CCCAAGAGGAGATAGATGGGGAATTCTTCTCAGATGC----------AAAGAGG-----TTCAGTA---CTTGGGTGTTTCAGACTGAGGGAAAAGGTTGAACAATGACACAGAAGTGGCAGAGCAGGGTATATCTGGG-----------------TATGGCT--GGGCATGTAGTACCTACAAGGGTGTGATGAAAGTGAAGATGTGATGGGAATCGATGAAGGACTTGCATATGCCAAGGAGTTTAGACTTGGTCTTGTAGAAGA-TGTGGGGTCGTTTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951509 251 - 7032639 cccaagaggagatagacggggaactcttctcagatgc----------aaagaggaggatttcagta---cttgggtgtttcagactgagggaaaaggttgaactaagacacagacgtggcagagcagggtgtatctggg-----------------tgtggct--gggcatgcagtgcctacgagggtgtgatgaaagtgaagatgtgatgggaagccatgaaggactggcATATGCCAAGGAGTTTAGACTTGGTCTTATAGAAGA-TGTGGGGTCGTTTCAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774140 227 + 28711273 --TGAGAGAGGAGG----CGGGGCTCAGCTCAGCTGC----------TAGGAATAGTCTTTCAGTC---CTTGGGTGTTTCAGAT--GAGGAAGGGGCTGAGCAAAGGCACAGCAGTGGCAGAGCAAGGCATATCTGAC-----------------AATGGCTGGGGGCACAGAGTACCTATG------------------GGATGTGACGAGAAGTGAGGTAGGTCTTGGACCTGCAAAGGGGTTTGGACTTAATCTTATGGGAAA-TGTGACACTGTTTCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22043022 214 - 122082543 CCAAAGAGGAGCTG----GGGAGCACGTCTCAGAGGC----------AAGAGAGAGATTTCGATTAACCCGTGAGTGTTGCCATTTGAGGGTGTAGGCTGTACAA------AGAAGTGCTGAAGCAAGGCATATTTAAG-----------------TAAGGCT--AAGAATTTGTTACC--CAAAGGAGTGGCAGCCATCAGG-------------------AGGAATTGCAGGTATCAAGGA--------CAAGTGTT--AGAAGGCTGTGACAGCGTTTCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21378914 254 + 61074082 cctggaaagagata----aggaattcttctcagaggCATGTCATGGGAAGAAAGAAGATTTCA-CA---TTTGTGTGTTTCAATCTGGGGGAAAATGCTGAGCAAAGACACAGAAGTGGTAGAGCA-GGTATA-CTGGGTTTGGCCCATGAGTTGATATGGCT--GGGTATGTATTACCTATAGG-----------------GATGTGATGGAAAATGAGGTAGGACCTGCACTTGCCAGGGGGTTTGGACTTAGTCTTATTGGAAA-TGTGAGCTTCTTTCAG i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 358045 221 - 852752 CCCGAAAGGAGGTA----GGCAACTCTTCTCAGAGGCGTATCTTG--AAAAAGGAGTATTTCAATG---CTTGAATGTTCTAGTCTGAGGGATGAGGCTAAGCAAAGTTATGGAAGTGGCTGAGTAGAGCATATTTGAGTGTTGCCAATGGAACAGTACAGCT--GGGCAGGCAGTACCTATAGGAATATGATG--------------------------------CTTG-----------------GCACTTACTCCTTTAGAGAA-TGTGAGGT-TTTCCA- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=52488.000000 s hg38.chr17_GL383564v2_alt 59897 5 + 133151 -TTTCT s panTro5.chr17 16246491 5 + 83181570 -TTTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153976 5 + 83442489 -TTTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3988997 5 + 4267968 -TTTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969394 5 - 2193130 -TTTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041943 5 - 77216781 -TTTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954552 5 - 80997621 -TTTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010794 5 + 10377808 -TTTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897911 5 - 8458610 -TTTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853649 5 + 75148670 -TTTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077094 5 + 4244037 -TTTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104958 5 + 4569836 -TTTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065637 5 - 159171411 -TTTCT i calJac3.chr5 C 0 I 5 s saiBol1.JH378271 1788052 5 + 3513951 -TTTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836959 5 + 1920343 -TTTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951760 5 - 7032639 -TTTCT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22043236 5 - 122082543 -CTTTT i mm10.chr11 C 0 I 5 s canFam3.chr9 21379169 4 + 61074082 -TTTT- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 358266 5 - 852752 GTTTT- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e otoGar3.GL873537 22774367 0 + 28711273 C a score=1730.000000 s hg38.chr17_GL383564v2_alt 59902 1 + 133151 -A s panTro5.chr17 16246496 1 + 83181570 -A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153981 1 + 83442489 -A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989002 1 + 4267968 -A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969399 1 - 2193130 -A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954557 1 - 80997621 -A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010799 1 + 10377808 -A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897916 1 - 8458610 -A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853654 1 + 75148670 -A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077099 1 + 4244037 -A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104963 1 + 4569836 -A i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1788057 1 + 3513951 -A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836964 1 + 1920343 -A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951765 1 - 7032639 -A i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22043246 1 - 122082543 -A i mm10.chr11 I 5 C 0 s canFam3.chr9 21379173 1 + 61074082 -G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358271 1 - 852752 T- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e otoGar3.GL873537 22774367 0 + 28711273 C e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=8281.000000 s hg38.chr17_GL383564v2_alt 59903 1 + 133151 T s panTro5.chr17 16246497 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153982 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989003 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969400 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954558 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010800 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897917 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853655 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077100 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104964 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1788058 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836965 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951766 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22043247 0 - 122082543 C e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379174 0 + 61074082 C e otoGar3.GL873537 22774367 0 + 28711273 C e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=33761.000000 s hg38.chr17_GL383564v2_alt 59904 4 + 133151 GGGA s panTro5.chr17 16246498 4 + 83181570 GGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153983 4 + 83442489 GGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989004 4 + 4267968 GGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969401 4 - 2193130 GGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954559 4 - 80997621 GGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010801 4 + 10377808 GGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897918 4 - 8458610 GGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853656 4 + 75148670 GGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077101 4 + 4244037 GGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104965 4 + 4569836 GGGA i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1788059 3 + 3513951 GGG- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836966 4 + 1920343 GGGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951767 4 - 7032639 GGGA i aotNan1.NW_018502359v1 C 0 I 3 s canFam3.chr9 21379174 4 + 61074082 GGGA i canFam3.chr9 C 0 C 0 e mm10.chr11 22043247 0 - 122082543 C e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=7401.000000 s hg38.chr17_GL383564v2_alt 59908 2 + 133151 CA- s panTro5.chr17 16246502 2 + 83181570 CA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153987 2 + 83442489 CA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989008 2 + 4267968 CA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969405 2 - 2193130 CA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954563 2 - 80997621 CA- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010805 2 + 10377808 CA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897922 2 - 8458610 CA- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853660 2 + 75148670 CA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077105 2 + 4244037 CA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104969 2 + 4569836 CA- i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1836970 2 + 1920343 CA- i cebCap1.NW_016107730v1 C 0 C 0 s mm10.chr11 22043247 2 - 122082543 GA- i mm10.chr11 C 0 C 0 s canFam3.chr9 21379178 2 + 61074082 -AA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e saiBol1.JH378271 1788062 0 + 3513951 C e calJac3.chr5 46065642 5 - 159171411 I e rheMac8.chr16 30041948 0 - 77216781 C a score=9090.000000 s hg38.chr17_GL383564v2_alt 59910 1 + 133151 A s panTro5.chr17 16246504 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153989 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989010 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969407 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954565 1 - 80997621 A i macFas5.chr16 C 0 I 74 s macNem1.NW_012014910v1 2010807 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897924 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853662 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077107 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104971 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065647 1 - 159171411 A i calJac3.chr5 I 5 C 0 s saiBol1.JH378271 1788062 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836972 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s mm10.chr11 22043249 1 - 122082543 A i mm10.chr11 C 0 I 1 s canFam3.chr9 21379180 1 + 61074082 G i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e rheMac8.chr16 30041948 0 - 77216781 C a score=-880.000000 s hg38.chr17_GL383564v2_alt 59911 1 + 133151 -C s panTro5.chr17 16246505 1 + 83181570 -C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153990 1 + 83442489 -C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989011 1 + 4267968 -C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969408 1 - 2193130 -C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065648 1 - 159171411 -C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788063 1 + 3513951 -C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836973 1 + 1920343 -C i cebCap1.NW_016107730v1 C 0 C 0 s canFam3.chr9 21379181 1 + 61074082 A- i canFam3.chr9 C 0 C 0 e mm10.chr11 22043250 1 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=2300.000000 s hg38.chr17_GL383564v2_alt 59912 1 + 133151 A s panTro5.chr17 16246506 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153991 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989012 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969409 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065649 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788064 1 + 3513951 A i saiBol1.JH378271 C 0 I 72 s mm10.chr11 22043251 1 - 122082543 G i mm10.chr11 I 1 C 0 s canFam3.chr9 21379182 1 + 61074082 A i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e cebCap1.NW_016107730v1 1836974 0 + 1920343 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=2548.000000 s hg38.chr17_GL383564v2_alt 59913 1 + 133151 A s panTro5.chr17 16246507 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153992 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989013 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969410 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065650 1 - 159171411 A i calJac3.chr5 C 0 C 0 s mm10.chr11 22043252 1 - 122082543 A i mm10.chr11 C 0 C 0 s canFam3.chr9 21379183 1 + 61074082 A i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951771 3 - 7032639 I e cebCap1.NW_016107730v1 1836974 0 + 1920343 C e saiBol1.JH378271 1788065 72 + 3513951 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=3276.000000 s hg38.chr17_GL383564v2_alt 59914 1 + 133151 T s panTro5.chr17 16246508 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153993 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989014 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969411 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065651 1 - 159171411 T i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6951774 1 - 7032639 T i aotNan1.NW_018502359v1 I 3 C 0 s mm10.chr11 22043253 1 - 122082543 T i mm10.chr11 C 0 I 2 s canFam3.chr9 21379184 1 + 61074082 T i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e cebCap1.NW_016107730v1 1836974 0 + 1920343 C e saiBol1.JH378271 1788065 72 + 3513951 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=196316.000000 s hg38.chr17_GL383564v2_alt 59915 70 + 133151 TGACGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGT-GTCACTCTTTGGGAATGATCAGAATCTT s panTro5.chr17 16246509 68 + 83181570 TGACGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGT---CACTCTTTGGGAATGATCAGAATCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16153994 68 + 83442489 TGACGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGT---CACTCTTTGGGAATGATCAGAATCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989015 71 + 4267968 TGATGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGTTTTTCGTCTTTGGGAATGATCAGAATCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969412 70 - 2193130 TGATGTGATCCCTGTTGG-AGTTTATTGCTATAAAATGTGTGT-GTCACTCTTTGGGAATTATCAGAGTCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46065652 70 - 159171411 TGATGTGATCCCTGTTTG-AGTTTATTGCTATGAAATGTGTGT-GTCACTCTTTGGGAATGATCAGAATATT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1836974 70 + 1920343 TGATGTGATCCTTATTTG-AGTTTATTGCTATGAAATGTGTGT-GTCACTCTTTGGGAATGATCAGAATATT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951775 70 - 7032639 TGATATGATCCCTGTTTG-AGTTTATTGCTATGAAATGTGTGT-GTTACTCTTTGGGAATGATCAGAATATT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22043256 61 - 122082543 GGCTGTGGTTCCTTTTGGAAGTTTGTTG-----AGATGTCTGC---AACTTT---GGAATGATCCGGATATT i mm10.chr11 I 2 I 21 s canFam3.chr9 21379185 70 + 61074082 TGATGTGATCCCTTTTTG-GGTTTATTCCTACATCATATCTGT-GTCAGTCTTGGGGAATGATCAGGATATT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e saiBol1.JH378271 1788065 72 + 3513951 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=34656.000000 s hg38.chr17_GL383564v2_alt 59985 11 + 133151 CCTTTTAGTGC s panTro5.chr17 16246577 11 + 83181570 CCTTTTAGTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154062 11 + 83442489 CCTTTTAGTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989086 11 + 4267968 CCTTTTAGTGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969482 11 - 2193130 CCTTTTAGTGC i nomLeu3.chrUn_GL397460_1 C 0 I 3 s calJac3.chr5 46065722 11 - 159171411 CCTTTTAGTGC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1837044 11 + 1920343 TCTTTTAGTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951845 11 - 7032639 CCTTTTAGTGC i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21379255 11 + 61074082 CCCTTCAGTGC i canFam3.chr9 C 0 C 0 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e saiBol1.JH378271 1788065 72 + 3513951 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=8696.000000 s hg38.chr17_GL383564v2_alt 59996 4 + 133151 -tttt s panTro5.chr17 16246588 4 + 83181570 -tttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154073 4 + 83442489 -tttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989097 4 + 4267968 -tttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969496 4 - 2193130 -tttt i nomLeu3.chrUn_GL397460_1 I 3 C 0 s calJac3.chr5 46065733 4 - 159171411 -TTTT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1837055 4 + 1920343 -TTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951856 4 - 7032639 -TTTT i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21379266 4 + 61074082 ATTT- i canFam3.chr9 C 0 C 0 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e saiBol1.JH378271 1788065 72 + 3513951 I e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=2548.000000 s hg38.chr17_GL383564v2_alt 60000 1 + 133151 t s panTro5.chr17 16246592 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154077 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989101 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969500 1 - 2193130 t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s cebCap1.NW_016107730v1 1837059 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 T 86 s aotNan1.NW_018502359v1 6951860 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 T 90 s canFam3.chr9 21379270 1 + 61074082 T i canFam3.chr9 C 0 C 0 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e saiBol1.JH378271 1788065 72 + 3513951 I e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=1365.000000 s hg38.chr17_GL383564v2_alt 60001 1 + 133151 t s panTro5.chr17 16246593 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154078 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989102 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969501 1 - 2193130 t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s canFam3.chr9 21379271 1 + 61074082 T i canFam3.chr9 C 0 T 98 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788065 72 + 3513951 I e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=2703.000000 s hg38.chr17_GL383564v2_alt 60002 7 + 133151 ttttttt s panTro5.chr17 16246594 7 + 83181570 ttttttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154079 7 + 83442489 tttttgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989103 4 + 4267968 tttt--- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969502 7 - 2193130 ttttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788065 72 + 3513951 I e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=600.000000 s hg38.chr17_GL383564v2_alt 60009 1 + 133151 g s panTro5.chr17 16246601 1 + 83181570 g i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989107 1 + 4267968 g i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969509 1 - 2193130 g i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788065 72 + 3513951 I e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I e panPan2.chr17 16154086 0 + 83442489 C a score=192945.000000 s hg38.chr17_GL383564v2_alt 60010 216 + 133151 acggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactccctggttcaagtgattcactt-gcctcagcctcctgagtagctgggattacaggcacatgccaccacgcccagctaatttttgtattgttagtagagatggggtttcaccatgttggctaggatggtttcgatctcctgacttcgtga s panTro5.chr17 16246602 216 + 83181570 acggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactccctggttcaagtgattcactt-gcctcagcctcctgagtagctgggattacaggcacgtgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggctaggatggtttcgatctcctgacttcgtga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154086 216 + 83442489 acggagtcatgctctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactccctggttcaagtgattcactt-gcctcagcctcctgagtagctgggattacaggcacgtgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggctaggatggtttcgatctcctgacttcgtga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989108 216 + 4267968 acggagtcatactctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatccgactgcctggttcaagtgattcactt-gcctcagcctcctgagtagctgggattacaggcacgtgccaccacgcccagctaatttttgtatttttagtagagacggggtttccccatgttggctaggatggtttcaatctcctgacttcgtga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969510 216 - 2193130 atggagtcgtactctgtcaccaggctggagtgcagtggcgtgatctaggctcactgtaacatctgactccctggttcaagtgattcacctgggttcagcctcccgagtagctgggattacaggcatgtgccaccacgcccagctaatttttgtatttttagtagagac-gggtttcaccatgttggctaggatggtttcgatctcctgacctcgtga i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22043317 21 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788065 72 + 3513951 I e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=55044.000000 s hg38.chr17_GL383564v2_alt 60226 60 + 133151 tccacctgcctctgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc s panTro5.chr17 16246818 60 + 83181570 tccacctgcctccgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154302 60 + 83442489 tccacctgcctccgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989324 60 + 4267968 tccacctgcctctgcctcccaaagtgctgggattacaggcttgagccactgtgcccggcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969726 60 - 2193130 tccacttgcctctgccttccaaagtgctgggattacaggcttgagccaccgcacccggcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s mm10.chr11 22043338 26 - 122082543 tccccccgcctccccctcc----------------------------------cccaatc i mm10.chr11 I 21 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788065 72 + 3513951 I e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954566 74 - 80997621 I a score=27632.000000 s hg38.chr17_GL383564v2_alt 60286 15 + 133151 CCTTTTAGTGCTTTC s panTro5.chr17 16246878 15 + 83181570 CCTTTTAGTGCTTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154362 15 + 83442489 CCTTTTAGTGCTTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989384 15 + 4267968 CCTTTTAGTGCTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969786 15 - 2193130 CCTTTTAGTGCTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954640 15 - 80997621 CCTTTCAGTGCTTTT i macFas5.chr16 I 74 C 0 s saiBol1.JH378271 1788137 15 + 3513951 CCTTTTAGTGATTTT i saiBol1.JH378271 I 72 C 0 s mm10.chr11 22043364 15 - 122082543 ccttccTAGGTATTC i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e calJac3.chr5 46065737 0 - 159171411 C e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=100413.000000 s hg38.chr17_GL383564v2_alt 60301 42 + 133151 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA s panTro5.chr17 16246893 42 + 83181570 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154377 42 + 83442489 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989399 42 + 4267968 TGGGCAGCATCAGGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969801 42 - 2193130 TGGGCAGCATCAAGCTCA-TTTTCCCAGAGCAGG-AAGATGGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954655 42 - 80997621 TGGGCAGTATTGTGCTCA-GTTTCCTGGAGCAGG-AAAATGGCA i macFas5.chr16 C 0 C 0 s calJac3.chr5 46065737 44 - 159171411 TGGGCAGCATCATGCTCATTTTTCCTGGAGCGGTAAAGATGGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788152 42 + 3513951 TGGGCAGTATCGTGCTCA-TTTTCCTGGAGGGGT-AAGATGGCA i saiBol1.JH378271 C 0 C 0 s mm10.chr11 22043379 42 - 122082543 TAGGTAGCACAGTACTCA-CTTCCCTGAAGCAGG-AAGAGAACA i mm10.chr11 C 0 I 13452 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=4296.000000 s hg38.chr17_GL383564v2_alt 60343 3 + 133151 CAT s panTro5.chr17 16246935 3 + 83181570 CAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154419 3 + 83442489 CAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989441 3 + 4267968 CAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969843 3 - 2193130 GAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954697 3 - 80997621 GAT i macFas5.chr16 C 0 C 0 s calJac3.chr5 46065781 3 - 159171411 GAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788194 3 + 3513951 GAT i saiBol1.JH378271 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e otoGar3.GL873537 22774367 0 + 28711273 C e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=3600.000000 s hg38.chr17_GL383564v2_alt 60346 1 + 133151 C s panTro5.chr17 16246938 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154422 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989444 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969846 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27954700 1 - 80997621 C i macFas5.chr16 C 0 T 135 s calJac3.chr5 46065784 1 - 159171411 C i calJac3.chr5 C 0 T 143 s saiBol1.JH378271 1788197 1 + 3513951 C i saiBol1.JH378271 C 0 T 133 s otoGar3.GL873537 22774367 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C a score=1480.000000 s hg38.chr17_GL383564v2_alt 60347 4 + 133151 -TTCC s panTro5.chr17 16246939 4 + 83181570 -TTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154423 4 + 83442489 -TTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989445 4 + 4267968 -TTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969847 4 - 2193130 -TTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s otoGar3.GL873537 22774368 4 + 28711273 CTTT- i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788198 133 + 3513951 T e calJac3.chr5 46065785 143 - 159171411 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e rheMac8.chr16 30041948 0 - 77216781 C e macFas5.chr16 27954701 135 - 80997621 T a score=-88.000000 s hg38.chr17_GL383564v2_alt 60351 1 + 133151 A s panTro5.chr17 16246943 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154427 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989449 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969851 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041948 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s calJac3.chr5 46065642 1 - 159171411 C i calJac3.chr5 T 143 C 0 s otoGar3.GL873537 22774372 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e dasNov3.JH570468 358272 0 - 852752 C e canFam3.chr9 21379272 98 + 61074082 T e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788198 133 + 3513951 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e macFas5.chr16 27954701 135 - 80997621 T a score=3276.000000 s hg38.chr17_GL383564v2_alt 60352 1 + 133151 T s panTro5.chr17 16246944 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154428 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989450 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969852 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041949 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s calJac3.chr5 46065643 1 - 159171411 T i calJac3.chr5 C 0 C 0 s otoGar3.GL873537 22774373 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 358272 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e canFam3.chr9 21379272 98 + 61074082 T e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788198 133 + 3513951 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e macFas5.chr16 27954701 135 - 80997621 T a score=18670.000000 s hg38.chr17_GL383564v2_alt 60353 7 + 133151 GGGACAG s panTro5.chr17 16246945 7 + 83181570 GGGACAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154429 7 + 83442489 GGGACAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989451 7 + 4267968 GGGACAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969853 7 - 2193130 GGGACAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041950 7 - 77216781 GGGACAG i rheMac8.chr16 C 0 C 0 s calJac3.chr5 46065644 6 - 159171411 GGGACA- i calJac3.chr5 C 0 C 0 s otoGar3.GL873537 22774374 7 + 28711273 GGGAAAT i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21379174 7 + 61074082 GGGAAAG i canFam3.chr9 T 98 C 0 s dasNov3.JH570468 358273 7 - 852752 GAGACAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e aotNan1.NW_018502359v1 6951861 90 - 7032639 T e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788198 133 + 3513951 T e macNem1.NW_012014910v1 2010808 0 + 10377808 C e colAng1.NW_012122154v1 2104972 0 + 4569836 C e manLeu1.NW_012106252v1 2077108 0 + 4244037 C e chlSab2.chr16 64853663 0 + 75148670 C e cerAty1.NW_012006043v1 1897925 0 - 8458610 C e macFas5.chr16 27954701 135 - 80997621 T a score=8313.000000 s hg38.chr17_GL383564v2_alt 60360 2 + 133151 CA s panTro5.chr17 16246952 2 + 83181570 CA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154436 2 + 83442489 CA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989458 2 + 4267968 CA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969860 2 - 2193130 CA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041957 2 - 77216781 CA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954566 2 - 80997621 CA i macFas5.chr16 T 135 C 0 s macNem1.NW_012014910v1 2010808 2 + 10377808 CA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897925 2 - 8458610 CA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853663 2 + 75148670 CA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077108 2 + 4244037 CA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104972 2 + 4569836 CA i colAng1.NW_012122154v1 C 0 C 0 s aotNan1.NW_018502359v1 6951771 2 - 7032639 CA i aotNan1.NW_018502359v1 T 90 C 0 s otoGar3.GL873537 22774382 1 + 28711273 T- i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21379181 1 + 61074082 -A i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 358280 2 - 852752 GA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e cebCap1.NW_016107730v1 1837060 86 + 1920343 T e saiBol1.JH378271 1788198 133 + 3513951 T e calJac3.chr5 46065650 0 - 159171411 C a score=27846.000000 s hg38.chr17_GL383564v2_alt 60362 2 + 133151 AT s panTro5.chr17 16246954 2 + 83181570 AT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154438 2 + 83442489 AT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989460 2 + 4267968 AT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969862 2 - 2193130 AT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041959 2 - 77216781 AT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954568 2 - 80997621 AT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010810 2 + 10377808 AT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897927 2 - 8458610 AT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853665 2 + 75148670 AT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077110 2 + 4244037 AT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104974 2 + 4569836 AT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065650 2 - 159171411 AT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788065 2 + 3513951 AT i saiBol1.JH378271 T 133 C 0 s aotNan1.NW_018502359v1 6951773 2 - 7032639 AT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774383 2 + 28711273 AT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379183 2 + 61074082 AT i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 358282 2 - 852752 AT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I e cebCap1.NW_016107730v1 1837060 86 + 1920343 T a score=1187542.000000 s hg38.chr17_GL383564v2_alt 60364 94 + 133151 TGATGTGATCCCTGTTGGAGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTGCTTTTTGGGCAGTA s panTro5.chr17 16246956 94 + 83181570 TGATGTGATCCCTGTTGGAGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTGCTTTTTGGGCAGTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154440 94 + 83442489 TGATGTGATCCCTGTTGGAGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTGCTTTTTGGGCAGTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989462 94 + 4267968 TGATGTGATCCCTGTTGGAGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTGCTTTTTGGGCAGTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969864 94 - 2193130 TGATGTGATCTCTGTAGGAGTTTACTGCTA-----TAAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTACTTTTTGGGCAGTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30041961 94 - 77216781 TGATGTGATCCCTGTTGGTGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGAAATGATCAGA-------------ATATTCCTTTCAGTGCTTTTTGGGCAGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954570 94 - 80997621 TGATGTGATCCCTGTTGGTGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGAAATGATCAGA-------------ATATTCCTTTCAGTGCTTTTTGGGCAGTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010812 94 + 10377808 TGATGTGATCCCTGTTGGTGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGAAATGATCAGA-------------ATATTCCTTTCAGTGCTTTTTGGGCAGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1897929 94 - 8458610 CGATGTGATCCCTGTTGGTGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGAAATGATCAGA-------------ATATTCCTTTCAGTGCTTTTTGGGCAGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853667 94 + 75148670 TGATGTGATCCCTGTTGGTGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGAAATGATCAGA-------------CTATTCCTTTCAGTGCTTTTTGGGCAGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077112 94 + 4244037 CGATGTGATCCCTGTTGGTGTTTATTGCTA-----TAAAATGTGTGTGTCACTCTTTGGAAATGATCAGA-------------ATATTCCTTTCAGTGCTTTTTGGGCAGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2104976 94 + 4569836 TGATGTGATCTCTGTTGGAGTTTATTGCTA-----TAAAATGTGTGTgtcactctttggaaatgatcaga-------------atattcctttcagtgctttttgggcagta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065652 94 - 159171411 TGATGTGATCCCTGTTTGAGTTTATTGCTA-----TGAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTGCTTTTTGGGCAGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788067 94 + 3513951 TGATGTGATCCCTGTTTTAGTTTATTGCTA-----GGAAATGTGTGTGTCACTCTTTGGGAATGCTCAGA-------------ATATTCCTTTTAGTGATTTTTGGGCAGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1836974 94 + 1920343 TGATGTGATCCTTATTTGAGTTTATTGCTA-----TGAAATGTGTGTGTCACTCTTTGGGAATGATCAGA-------------ATATTTCTTTTAGTGCTTTTTGGGCAGCA i cebCap1.NW_016107730v1 T 86 C 0 s aotNan1.NW_018502359v1 6951775 94 - 7032639 TGATATGATCCCTGTTTGAGTTTATTGCTA-----TGAAATGTGTGTGTTACTCTTTGGGAATGATCAGA-------------ATATTCCTTTTAGTGCTTTTTGGGCAGCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22774385 106 + 28711273 TGATATGATCTCTATTTGAGTTTG-TGCTACTCCGTGAAA----TGTGTTAATCTTTGGGGATGATCAGGATATATATATTATATATGTATTTTAGTGCTTTTTGTCAAGG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379185 94 + 61074082 TGATGTGATCCCTTTTTGGGTTTATTCCTA-----CATCATATCTGTGTCAGTCTTGGGGAATGATCAGG-------------ATATTCCCTTCAGTGCATTTTTGTCAGGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358284 94 - 852752 TGATGTGATCCCTATTTGAGTTTAATCCTA-----TATATTATGTGAATCAGTCTTTGGGAATGATGAGA-------------ATATTTCCTTTAATGCATTCCTGGCAAGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e micMur3.chr16 35878593 784 - 65901067 I a score=123243.000000 s hg38.chr17_GL383564v2_alt 60458 8 + 133151 TTGTGCTC s panTro5.chr17 16247050 8 + 83181570 TTGTGCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154534 8 + 83442489 TTGTGCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989556 8 + 4267968 TCGTGCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969958 8 - 2193130 TTGTGCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042055 8 - 77216781 TTGTGCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954664 8 - 80997621 TTGTGCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010906 8 + 10377808 TTGTGCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898023 8 - 8458610 TTGTGCTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853761 8 + 75148670 TTGTGCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077206 8 + 4244037 TTGTGCTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105070 8 + 4569836 ttgtgctc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065746 8 - 159171411 TCATGCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788161 8 + 3513951 TCGTGCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837068 8 + 1920343 TGGTGCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951869 8 - 7032639 TCGTGCTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879377 8 - 65901067 TTGTGCTC i micMur3.chr16 I 784 C 0 s otoGar3.GL873537 22774491 8 + 28711273 TTGTGCTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379279 8 + 61074082 TTGTACTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358378 8 - 852752 TAGTGCTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=158880.000000 s hg38.chr17_GL383564v2_alt 60466 15 + 133151 A-TTTCCCTGGAGCAG s panTro5.chr17 16247058 15 + 83181570 A-TTTCCCTGGAGCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154542 15 + 83442489 A-TTTCCCTGGAGCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989564 15 + 4267968 A-TTTCCCTGGAGCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969966 15 - 2193130 A-TTTTCCTGGAGCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042063 15 - 77216781 A-GTTTCCTGGAGCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954672 15 - 80997621 A-GTTTCCTGGAGCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010914 15 + 10377808 A-GTTTCCTGGAGCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898031 15 - 8458610 A-GTTTCCTGGAGCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853769 15 + 75148670 A-GTTTCCTGGCGCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077214 15 + 4244037 A-GTTTCCTGGAGCAG i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46065754 16 - 159171411 ATTTTTCCTGGAGCGG i calJac3.chr5 C 0 I 2 s saiBol1.JH378271 1788169 15 + 3513951 A-TTTTCCTGGAGGGG i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1837076 15 + 1920343 A-TTTTCCTGGAGCGG i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6951877 15 - 7032639 A-TTTTCCTGGAGCGG i aotNan1.NW_018502359v1 C 0 I 1 s micMur3.chr16 35879385 15 - 65901067 A-CTTTCCCAGAGCAG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774499 15 + 28711273 A-CTTTCTTAGAGCAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379287 15 + 61074082 A-CTTTCCTACAATAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358386 15 - 852752 A-CTTTCTTATGGTAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e colAng1.NW_012122154v1 2105078 0 + 4569836 C a score=18870.000000 s hg38.chr17_GL383564v2_alt 60481 5 + 133151 -GAAAA s panTro5.chr17 16247073 5 + 83181570 -GAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154557 5 + 83442489 -GAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989579 5 + 4267968 -GAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1969981 5 - 2193130 -GAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042078 5 - 77216781 -GAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27954687 5 - 80997621 -GAAAA i macFas5.chr16 C 0 I 14167 s macNem1.NW_012014910v1 2010929 5 + 10377808 -GAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898046 5 - 8458610 -GAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853784 5 + 75148670 -GAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077229 5 + 4244037 -GAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105078 5 + 4569836 -caaaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065772 4 - 159171411 -AAGA- i calJac3.chr5 I 2 C 0 s saiBol1.JH378271 1788185 4 + 3513951 -AAGA- i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1837092 4 + 1920343 -AAGA- i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6951893 4 - 7032639 -AAGA- i aotNan1.NW_018502359v1 I 1 C 0 s micMur3.chr16 35879400 5 - 65901067 -GAAGA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774514 5 + 28711273 -GAAGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379302 5 + 61074082 -GAAGA i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 358401 5 - 852752 TAAGA- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=156649.000000 s hg38.chr17_GL383564v2_alt 60486 11 + 133151 TGGCAGATCCA s panTro5.chr17 16247078 11 + 83181570 TGGCAGATCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154562 11 + 83442489 TGGCAGATCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989584 11 + 4267968 TGGCAGATCCA i gorGor5.CYUI01015385v1 C 0 I 1 s nomLeu3.chrUn_GL397460_1 1969986 11 - 2193130 TGGCAGATCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042083 11 - 77216781 TGGCAGATCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968859 11 - 80997621 TGATAGACTTC i macFas5.chr16 I 14167 C 0 s macNem1.NW_012014910v1 2010934 11 + 10377808 TGGCAGATCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898051 11 - 8458610 TGGCAGATCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853789 11 + 75148670 TGGCAGATCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077234 11 + 4244037 TGGCCGATCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105083 11 + 4569836 tggcagatcca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46065776 11 - 159171411 TGGTAGATCCA i calJac3.chr5 C 0 I 18306 s saiBol1.JH378271 1788189 11 + 3513951 TGGCAGATCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837096 11 + 1920343 TGGCAGATCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951897 11 - 7032639 TGGCAGATCCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879405 11 - 65901067 TAGCAGAGCCA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774519 11 + 28711273 TAGCAGATCTA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21379311 11 + 61074082 CAGCAAATTCA i canFam3.chr9 I 4 I 19085 s dasNov3.JH570468 358406 11 - 852752 TAGCAGATCCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=24950.000000 s hg38.chr17_GL383564v2_alt 60497 3 + 133151 -TTG s panTro5.chr17 16247089 3 + 83181570 -TTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154573 3 + 83442489 -TTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989596 3 + 4267968 -TTG i gorGor5.CYUI01015385v1 I 1 C 0 s nomLeu3.chrUn_GL397460_1 1969997 3 - 2193130 -TTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042094 3 - 77216781 -TTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968870 3 - 80997621 -TTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010945 3 + 10377808 -TTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898062 3 - 8458610 -TTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853800 3 + 75148670 -TTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077245 3 + 4244037 -TTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105094 3 + 4569836 -ttg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084093 3 - 159171411 -TTT i calJac3.chr5 I 18306 C 0 s saiBol1.JH378271 1788200 3 + 3513951 -TTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837107 3 + 1920343 -TTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951908 3 - 7032639 -TTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879416 3 - 65901067 -CTG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774530 3 + 28711273 -CCG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 358417 3 - 852752 TTT- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T e canFam3.chr9 21379322 19085 + 61074082 I a score=58601.000000 s hg38.chr17_GL383564v2_alt 60500 5 + 133151 CCGTA s panTro5.chr17 16247092 5 + 83181570 CCGTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154576 5 + 83442489 CCGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989599 5 + 4267968 CCGTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970000 5 - 2193130 CTATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042097 5 - 77216781 CCGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968873 5 - 80997621 CTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010948 5 + 10377808 CCGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898065 5 - 8458610 CCGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853803 5 + 75148670 CCGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077248 5 + 4244037 CCGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105097 5 + 4569836 ctgTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084096 5 - 159171411 CCGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788203 5 + 3513951 CCATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837110 5 + 1920343 CCATA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951911 5 - 7032639 CCATA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879419 5 - 65901067 CTGTG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774533 5 + 28711273 CTGTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21398407 5 + 61074082 CTGTG i canFam3.chr9 I 19085 C 0 s dasNov3.JH570468 358420 5 - 852752 CTGTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22043421 13452 - 122082543 I e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=4335683.000000 s hg38.chr17_GL383564v2_alt 60505 272 + 133151 GGTTCATTGTTTCCCTTT-TCTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACTAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGCCCCAGGGCCCTGGAGACAGGGTCTGATCCT------TTCCCCACTTG---G- s panTro5.chr17 16247097 272 + 83181570 GGTTCATTGTTTCCCTTT-TCTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACTAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGACCCAGGGCCCTGGAGACAGGGTCTGATCCT------TTCCCCACTTG---G- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154581 273 + 83442489 GGTTCATTGTTTCCCTTT-TCTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACTAACCGCAAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGACCCAGGGCCCTGGAGACAGGGTCTGATCCT------TTCCCCACTTG---G- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989604 272 + 4267968 GGTTCATTGTTTCCCTTT-TCTCCAACAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGATCGCCTCAATGTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGGACCCGAGG--TGCCCCAGGGCCCTGGAGACAGGGTCTGATCCT------TTCCCCACTTG---G- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970005 271 - 2193130 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCTCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGGATCTGAGG--TGCCCCAGGGCCCTGGACACAGGGTCTGATCCT------TT-CCCAATTG---C- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042102 272 - 77216781 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT------TTCCCCACTTG---G- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968878 274 - 80997621 GGTTTATTTCTTCCCTTT-TCTCCATTAGGAGGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGGAACTGAGGCCCACCCTACGGCCCCGGAGTCAGGGTCTGATCCT------TTCTCCCCTTG---G- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2010953 272 + 10377808 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCGGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT------TTCCCCACTTG---G- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898070 272 - 8458610 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT------TTCCCCACTTG---G- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64853808 272 + 75148670 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGCCCCAAGGCCTTGGAGGCAGGGTCTGATCCT------TTCCTCACTTG---G- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077253 272 + 4244037 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGC-AGGGAAGTGGAGCAATGGTTCGCCACACAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAGG--TGCCCCAAGGCCCTGGAGGCAGGGTCTGATCCT------TTCCCCACTTG---G- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105102 272 + 4569836 GGTTCATTGTTTCCCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCAC-AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGGACCCGAGG--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT------TTCTCCCTTTG---G- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084101 270 - 159171411 AGTTTCTTTCTTACCTTT-TCTTCATTAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAATCAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGCACGCGGCCACTCAGGATACGAGG----CCCCTAGGTCCTGGAGGCAGGGTCTGATCCT------TTCTCCCCGTG---G- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788208 274 + 3513951 GATTCATTCCTTTTCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTGGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAATGAGACCAGGAGTCAGTACGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGCAGTCACTCAGGACCCGAGGACCACCCCAGGGCCCCGGAGGCAGGGGCTGATCCT------TTCTCCCCTTG---G- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837115 277 + 1920343 GATTCATCCCTTTTCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTGAATCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGCACGCAGTCACTCAGGACCTGAGGACCACCCCAGGGCCCTGGAAGCAGGGTCTGATCCT------TTCTCCCCTTGGGTG- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6951916 274 - 7032639 GATTCATTCCTTTTCTTT-TCTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGC-AGGGAAGTGGAGCAGTGGTTCGCCACACAGGTGAGCA--TCTAAGCACGCAATCACTCAGGACCCGAGGACCACCCCAGGGCCCTGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879424 275 - 65901067 GGTTCATTCTTGTCCCTT-TCTCCATCAGGAAGTCAACACCCTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCACCGTGGACCTGAACCAGGTGCTGAACGAGACCAGGAGCCAGTACGAGGCCCTGGTGGAGACCAACCGC-AGGGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGTGTCTCTCAGCATGTGGCCACTCGA--CCCCAGA--CCCCCCAGGGCCCTCGAGGCAGGGTCTGATCCTGCG---TCCTCCCCTTG---C- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774538 274 + 28711273 GG-TCATTCTTTCCCCTT-TCTCCATTAGGAAGTCAACAGTCTGCGCTGCCAGCTTGGAGATCGCCTGAACGTGGAGGTGGACGCTGCCCCCACTGTGGACCTGAATCGGGTTCTAAATGAGACCAGGTGTCAGTACGAGGCCCTGGTGGAGACCAACCGC-AGAGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGCA--TCTCAGCGCCTGGCCACTCAGTTCCTCTGA--ACCGCCAGGATCCCTCAGCCTGGGTCTGATCCCATC---TCCTCCCATTG---G- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22056873 276 - 122082543 GGTCCACTCTTTGCCTTTCCCCCCACCAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTAGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTGCTCAACGAGACCAGGTGTCAGTACGAGGCCCTGGTGGAAACCAACCGC-CGGGAAGTGGAGGAATGGTTCACCACACAGGTGGGCA--TCTGAGCCCAGGGTCACTCAGAAACCAAGT----CCCCAGGACTGT-AAGGCAGGGTCTGATCCTGTCCCTCCCTCCCCTTG---C- i mm10.chr11 I 13452 C 0 s canFam3.chr9 21398412 275 + 61074082 GGTTCATTCTTCCCCCTT-CCTCCCTCAGGAAGTCAATACCCTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGATGCAGCCCCAACCGTGGACCTGAACCGTGTGCTCAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAGACCAACCGC-AGGGACGTGGAGGAATGGTTCACCACCCAGGTGGGCA--TCTCAGCACGTGGCCACTGAGGGCCCTTGG--CCCCTCGGGGCCCTTGAGGCAGGGTCTGACCCTGTC---TTCTCCCCTGT---G- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358425 275 - 852752 AGTTCATTCCTTCCACTT-TTTCTATCAGGAAGCCAACTCCCTGCGTAGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGACGCGGCGCCCACCGTGGACCTGAACCGTGTGCTGAACGAGACCAGGTGCCAGTACGAGGCCCTGGTGGAGACCAACCGC-AGGGACGTGGAGGAGTGGTTCACCACGCAGGTGGGCG--CCTAGGCGCATGGCCACGCAGGACCGCAG---TCCCTCGGGGCCCTGGAGGCAGCGCCTGATCCTGGC---TTCTCCCCTTT---GG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2964260 81795 + 8555354 T a score=2830183.000000 s hg38.chr17_GL383564v2_alt 60777 138 + 133151 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACAGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG s panTro5.chr17 16247369 138 + 83181570 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154854 138 + 83442489 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGCGGTATCCAGCTCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3989876 138 + 4267968 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATTATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970276 138 - 2193130 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATAGAGCTACAGGCCCAGCACAACCTGGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042374 138 - 77216781 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969152 138 - 80997621 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAACTGAGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011225 138 + 10377808 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898342 138 - 8458610 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854080 138 + 75148670 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077525 138 + 4244037 GTGTTTCAGACTGAGGAGCTGAGCAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105374 138 + 4569836 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGTGCAGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084371 138 - 159171411 GTGTTACAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788482 138 + 3513951 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837392 138 + 1920343 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952190 138 - 7032639 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879699 138 - 65901067 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGCGCCGCATGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2882465 138 + 8555354 GTGTTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCCGAGCAGCTGCAGTCCTGCCAGGCAGAGATTGTCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAGCATGGTG i proCoq1.NW_012135969v1 T 81795 I 68083 s otoGar3.GL873537 22774812 138 + 28711273 CTATTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACAGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057149 138 - 122082543 CTATTGCAGACAGAGGAGCTGAACAAGCAGGTGGTGTCTAGCTCAGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGCACAGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAGCATGGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21398687 138 + 61074082 CTATTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAACGCCTTGGAGATTGAGCTCCAGGCTCAGCACAACCTGGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 358700 138 - 852752 ACATTTCAGACCGAGGAGCTCAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTCCCAGGCTGAGATCATCGAGCTGAGGCGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i dasNov3.JH570468 C 0 C 0 a score=194724.000000 s hg38.chr17_GL383564v2_alt 60915 12 + 133151 TGTATTGTTCAG s panTro5.chr17 16247507 12 + 83181570 TGTATTGTTCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16154992 12 + 83442489 TGTATTGTTCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990014 12 + 4267968 TGTATTGTTCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970414 12 - 2193130 TGTATTGTTCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042512 12 - 77216781 TGTATTGTTCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969290 12 - 80997621 TGTATTGTTCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011363 12 + 10377808 TGTATTGTTCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898480 12 - 8458610 TGTATTGTTCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854218 12 + 75148670 TGTATTGTTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077663 12 + 4244037 TGTATTGTTCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105512 12 + 4569836 TGTATTGTTCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084509 12 - 159171411 TGTATTGTTCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788620 12 + 3513951 TGTATTGTTCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837530 12 + 1920343 TGTATTGTTCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952328 12 - 7032639 TGTATTGTTCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879837 12 - 65901067 TGTGCTGCTCAG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22774950 12 + 28711273 AGTGTGGCTCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057287 12 - 122082543 TGTAGTGTCCAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21398825 12 + 61074082 GGTGTTGTTCAG i canFam3.chr9 C 0 T 19083 s dasNov3.JH570468 358838 12 - 852752 TGTGTGACTCAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2882603 68083 + 8555354 I a score=188650.000000 s hg38.chr17_GL383564v2_alt 60927 16 + 133151 -----ACCTGCTGGTGAGCGA s panTro5.chr17 16247519 16 + 83181570 -----ACCTGCTGGTGAGCGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155004 16 + 83442489 -----ACCTGCTGGTGAGCGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990026 16 + 4267968 -----ACCTGCTGGTGAGCGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970426 16 - 2193130 -----ACCTGCTGGTGAGCGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042524 16 - 77216781 -----CCCTGCTGGTGAGCGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969302 16 - 80997621 -----CCCTGCTGGTGAATGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011375 16 + 10377808 -----CCCTGCTGGTGAGCGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898492 16 - 8458610 -----CCCTGCTGGTGAGCGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854230 16 + 75148670 -----CCCTGCTGGTGAGCGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077675 16 + 4244037 -----CCCTGCTGGTGAGTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105524 16 + 4569836 -----CCCTGCTGGTGAGTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084521 16 - 159171411 -----CCCTGCTGGTGAGCGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788632 16 + 3513951 -----CCCTGCTGATGAGCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837542 16 + 1920343 -----CCCTGCTGGTGAGCGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952340 16 - 7032639 -----CCCTGCTGGTGAGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879849 16 - 65901067 -----CCCTGCTGGGGAGCCG i micMur3.chr16 C 0 I 1 s otoGar3.GL873537 22774962 16 + 28711273 -----ACCTGATGGAGAGCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057299 15 - 122082543 -----A-CTGCTGCTGAGCAG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 358850 13 - 852752 ACCTGCCCTGCGG-------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2882603 68083 + 8555354 I e canFam3.chr9 21398837 19083 + 61074082 T a score=148992.000000 s hg38.chr17_GL383564v2_alt 60943 13 + 133151 TGGGAA-------CTTGGGA- s panTro5.chr17 16247535 13 + 83181570 TGGGAA-------CTTGGGA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155020 13 + 83442489 TGGGAA-------CTTGGGA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990042 13 + 4267968 TGGGAA-------GTTGGGA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970442 13 - 2193130 TGGGAA-------GTTGGGA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042540 13 - 77216781 TGAGAA-------GTTGGGA- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969318 13 - 80997621 TGGGAA-------GTTGGGA- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011391 13 + 10377808 TGAGAA-------GTTGGGA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898508 13 - 8458610 TGAGAA-------GTTGGGA- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854246 13 + 75148670 TGAGAA-------GTTGGGA- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077691 13 + 4244037 TGAGAA-------GTTGGGA- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105540 13 + 4569836 TGGGAA-------GTTGGGA- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084537 13 - 159171411 TGGGAC-------GTTGGGA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788648 13 + 3513951 TCGGAC-------GTTGGGA- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837558 13 + 1920343 TGGGAC-------GTTGGGA- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952356 13 - 7032639 TGGGAC-------GTTGGGA- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879866 13 - 65901067 GGGCAG-------CCGGGGA- i micMur3.chr16 I 1 C 0 s proCoq1.NW_012135969v1 2950686 13 + 8555354 GGGGAG-------GCGGGGA- i proCoq1.NW_012135969v1 I 68083 C 0 s otoGar3.GL873537 22774978 13 + 28711273 GGGGAG-------GTTGGAA- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057314 13 - 122082543 TGTGGA-------GTGGGGA- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 358863 21 - 852752 TGGGAAGGGCCGGGTTGGGGA i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21398837 19083 + 61074082 T a score=1980700.000000 s hg38.chr17_GL383564v2_alt 60956 141 + 133151 GGCAGAGTCCC----------------GGGGATGTGCTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGTAATCCTGTGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT s panTro5.chr17 16247548 141 + 83181570 GGCAGAGTCCC----------------GGGGATGTGCTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGTAATCCTGTGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155033 141 + 83442489 GGCAGAGTCCC----------------GGGGATGTGCTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTCGGAATCCTGTGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990055 141 + 4267968 GGCAGAGTCCT----------------GGGGATGTGCTTGGGGCCACACACTCTC-------------------------------------------CTTAGTT-CTTGGAGCTTGTGACTTCCTTGTAATCCTGTGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970455 141 - 2193130 GGCAGAGTCCC----------------AGGGATGTGCTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTGTGAAGAAACCCTTTGACGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042553 141 - 77216781 GACAGAGTCCC----------------AGGGATGTGTTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969331 141 - 80997621 GGCAGAGTCCT----------------GGGGACATCCTTGGGGCCACACACTCTC-------------------------------------------CTTAGCTCCTTGGAACTTGTGAGTTTTTTGGAACTCCATGGAGGAACCCTAC-AAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011404 141 + 10377808 GACAGAGTCCC----------------AGGGATGTGTTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898521 141 - 8458610 GACAGAGTTCC----------------AGGGATGTGTTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854259 141 + 75148670 GACAGAGTCCC----------------AGGGATGTGTTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077704 141 + 4244037 GACAGAGTCCC----------------AGGGATGTGTTTGGGACCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAAACTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105553 141 + 4569836 GGCAGAGTCCC----------------AGGAATGTGTTTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGCTTGTGACTTCCTTGGAATCCTATGAAGAAACCCTTTGAAGGAGCAGCTCTCTGACATTCTTGATCTTCCCCACCA--------CAGCGAAACTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084550 140 - 159171411 GGCAGAGTCCC----------------GGGGCTGCCCTTGGGACCACACGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC-AGTGACTTCCTTGGAATCCTATGAAGAAAGGCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788661 140 + 3513951 GGCAGAGTCCC----------------AGGGCTGCCCTTGGGACCACACGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC-TGTGATTTCCTTGGAATCCTATGAAGGAAGGCTTTGAAAGAGCAGCCCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837571 140 + 1920343 GGCAGAGTCCC----------------GGGGCTGCCCTTGGGACCACATGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAAGGCTTTGAAGGAGCAGCTCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952369 140 - 7032639 GGCAGAGTCCC----------------GGGGCTGCCCTTGGGACCACACGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAATGCTTTGAAAGATCAGCCCTCTGACATTCCTGATCTTCCCCACCA--------CAGCGAGACTCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879879 138 - 65901067 GGTGGGGTCAC----------------GGGGATGCCCTTTGGGCCACAGGCTCTC-------------------------------------------CTTAGTG-TT-GGATCTTGTGAGTTCTTGGGACC-CCATGGAGAAATCCTTTAAAGGAGCAGCTGTCTGACACGCTTTATGTCCCCC-TGA--------CAGAGAAACTCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950699 139 + 8555354 GGCGGAGTCAC----------------GGGGATGCCCTTTGGGCCACACGCTCTC-------------------------------------------CTTAGTC-TT-GGATCTGGTGAAGTCTTTGGACCTCCATGGAGAAACCCTTTAAAGGAGCAGCTCTCTGACATGCTTCATCTCCCTC-TCA--------CAGAGAAACTCT i proCoq1.NW_012135969v1 C 0 T 67718 s otoGar3.GL873537 22774991 161 + 28711273 GGTGGGGTCACAAGCAGGTGGGGTCAAGGGGATGCCCTCTGGGGCACAG--TCTC-------------------------------------------CTTAGCG-CTGGGATCTTGGGACTTCTTTGGAACCCCATGAAGAAACCCTGT-AAGGAGCAGCTCTCTGATATTCTGTATTTGTTCT-CCATCCATCCTCAGAGAAACTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057327 183 - 122082543 GGCAGAGTCAC----------------TGGGGTGTCCTTGCAGcctctctctctctctctctctctccctgtccctccccctcccccctccctctcTTCTTAGCT-CATGAAGCCTGTGACTTCTCTGGAAGTC-ATGCAGAAACCTTCAGAGGGAACAGCTCTGTGACAGCCTTTGTTTTCTCCCCCA--------CAGAGAAACTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21379754 118 + 61074082 GGTAGTGCCCA----------------GG---------------------CTCTC-------------------------------------------CTGAACC-CATGAAGCCTGTGACTTCTCTGAAACCCCATGGAGAAGCCCCCTG-GGGAGTGGCTCTGTGACATTCTTTGTCTTCCCCA-CA--------CAGAGGGACTCC i canFam3.chr9 T 19083 C 0 s dasNov3.JH570468 358884 138 - 852752 ACGGGAGTCCT----------------GGGCATCCCCTGGGGACCAGGCACTCTC-------------------------------------------CTTAAC--CTGGACGCTTGTGGCTTCTTTGGAACCACGTAGAGAAAGGCTTAG-AGGAGCCCCTCCCTGATGCCCTTCATGTTC-CCACCA--------CAGAGAAACTCC i dasNov3.JH570468 C 0 C 0 a score=421908.000000 s hg38.chr17_GL383564v2_alt 61097 24 + 133151 CTGGAAAACACGCTGACGGAGAGC s panTro5.chr17 16247689 24 + 83181570 CTGGAAAACACGCTGACGGAGAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155174 24 + 83442489 CTGGAAAACACGCTGACGGAGAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990196 24 + 4267968 CTGGAAAACACGCTGACGGAGAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970596 24 - 2193130 CTGGAAAACACACTGACGGAGAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042694 24 - 77216781 CTGGAAAACACACTGACGGAGAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969472 24 - 80997621 CTGGAAAACACGCTGACGGAGAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011545 24 + 10377808 CTGGAAAACACACTGACGGAGAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898662 24 - 8458610 CTGGAAAACACGCTGACGGAGAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854400 24 + 75148670 CTGGAAAACACGCTGACGGAGAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077845 24 + 4244037 CTTGAAAACACGCTGACGGAGAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105694 24 + 4569836 CTGGAAAACACGCTGACGGAGAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084690 24 - 159171411 CTGGAAAACACGCTGACGGAGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788801 24 + 3513951 CTGGAAAACACGCTGACGGAGAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837711 24 + 1920343 CTGGAAAACACGCTGACGGAGAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952509 24 - 7032639 CTGGAAAACACGCTGACGGAGAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880017 24 - 65901067 CTGGAAAACACGCTGACGGAGAGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22775152 24 + 28711273 CTGGAAAACACACTGACTGAGAGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057510 24 - 122082543 CTGGAGAATACCCTGGCAGAGAGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21379872 24 + 61074082 CTGGAGAACACGCTGACAGAGACT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359022 24 - 852752 CTGGAAAACACGCTGAACGAGACC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2950838 67718 + 8555354 T a score=3828151.000000 s hg38.chr17_GL383564v2_alt 61121 194 + 133151 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCTCAGCTGGCAGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGT s panTro5.chr17 16247713 194 + 83181570 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATTAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155198 194 + 83442489 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATTAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990220 194 + 4267968 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTGAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970620 194 - 2193130 GAGGCCCGCTACAGCGCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCAGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACATACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042718 194 - 77216781 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969496 194 - 80997621 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011569 194 + 10377808 GAGGTCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898686 194 - 8458610 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGTTACAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854424 194 + 75148670 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGTTACAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2077869 194 + 4244037 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGTTACAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105718 194 + 4569836 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084714 194 - 159171411 GAGGCCCGCTACAGCTCCCAGCTGGCCCAGGTGCAGTGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTAAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1788825 194 + 3513951 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCATGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837735 194 + 1920343 GAGGCCCGCTACAGCACCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952533 194 - 7032639 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880041 194 - 65901067 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCCCGGCTGGAGTGCGAGATCAACACGTACCGGGCGCTGCTGGATGGGGAGGACTGCAAGTGAGT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2883120 194 + 8555354 GAGGCCCGCTATGGCACCCAGCTGTCGCAGGTGCAGTGCATGATCACCAGCGTGGAGTCCCAGTTGGCTGAGATCCGGGCCAACTTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCCCGGCTGGAGTGCGAGATCAACACGTACCGGGGCCTGCTGGAGAGTGAGGACAGCAAGTGAGT i proCoq1.NW_012135969v1 T 67718 C 0 s otoGar3.GL873537 22775176 194 + 28711273 GAGGCCCGCTATAGCTCCCAGCTGGCCCAGGTGCAGTGCATGGTGACCAACGTGGAGGCCCAGCTGGCAGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCCCGGCTGGAGTGTGAGATCGAGACGTACCGGGGTCTGCTGGAGAGCGAGGACTGCAAGTGAGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057534 194 - 122082543 GAGGCTCGCTACAGCTCTCAGCTGTCCCAGGTGCAGTGCCTGATCACCAACGTGGAGTCCCAGCTTGGTGAGATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAGGTGTTGCTGGATGTCAAGGCCCGGCTGGAGTGTGAGATCAACACGTATAGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGT i mm10.chr11 C 0 T 13436 s canFam3.chr9 21379896 194 + 61074082 GAGGCCCGCTACGGCTCCCAGCTGGCCCAGGTGCAGTACATGATCACCAACGTGGAGTCCCAGCTTGCTGAGATCAGGTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGTTGGACGTCAAGGCCCGGCTGGAGTGTGAGATCAACACATACCGGGGTCTGCTGGAGAGCGAGGACTGCAAGTGAGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359046 194 - 852752 GAGGCCCGCTACAGCTCCCAGCTGGCCCAGTTGCAGTCCCTGATCAGCAGCGTGGAGTCCCAGCTGGCGGAGATCCGGGGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCCCGGCTGGAGGGTGAGATCAACACCTATCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGT i dasNov3.JH570468 C 0 C 0 a score=9440.000000 s hg38.chr17_GL383564v2_alt 61315 1 + 133151 A s panTro5.chr17 16247907 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155392 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990414 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970814 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042912 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969690 1 - 80997621 A i macFas5.chr16 C 0 T 14169 s macNem1.NW_012014910v1 2011763 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898880 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854618 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078063 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105912 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084908 1 - 159171411 A i calJac3.chr5 C 0 T 17947 s saiBol1.JH378271 1789019 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837929 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952727 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880235 1 - 65901067 A i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2883314 1 + 8555354 A i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775370 1 + 28711273 G i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380090 1 + 61074082 G i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 359240 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22057728 13436 - 122082543 T a score=15561.000000 s hg38.chr17_GL383564v2_alt 61316 1 + 133151 T s panTro5.chr17 16247908 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155393 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990415 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970815 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042913 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955522 1 - 80997621 T i macFas5.chr16 T 14169 C 0 s macNem1.NW_012014910v1 2011764 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898881 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854619 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078064 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105913 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1789020 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837930 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952728 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880236 1 - 65901067 T i micMur3.chr16 C 0 I 481 s proCoq1.NW_012135969v1 2883315 1 + 8555354 T i proCoq1.NW_012135969v1 C 0 I 83700 s otoGar3.GL873537 22775371 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 359241 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22057728 13436 - 122082543 T e canFam3.chr9 21380091 1 + 61074082 I e calJac3.chr5 46084909 17947 - 159171411 T a score=157089.000000 s hg38.chr17_GL383564v2_alt 61317 12 + 133151 GGGGCAAATAAT s panTro5.chr17 16247909 12 + 83181570 GGGGCAAATAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155394 12 + 83442489 GGGGCAAATAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990416 12 + 4267968 GGGGCAAATAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970816 12 - 2193130 GGGGCAAAGAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042914 12 - 77216781 GGGGCAAAGAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955523 12 - 80997621 GGGGCAAAGAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011765 12 + 10377808 GGGGCAAAGAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898882 12 - 8458610 GGGGCAAAGAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854620 12 + 75148670 GGGGCAAAGAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078065 12 + 4244037 GGGGCAAAGAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105914 12 + 4569836 GGGGCAAAGAAT i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1789021 12 + 3513951 GGGGCAAAGAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837931 12 + 1920343 GGGGCAAAGAAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952729 12 - 7032639 GGGGCAAAGAAT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967016 12 + 8555354 GGGGCAAAGGAT i proCoq1.NW_012135969v1 I 83700 C 0 s otoGar3.GL873537 22775372 12 + 28711273 GGTGCAAAGGAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380092 12 + 61074082 GAGACAAAGAAC i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 359242 12 - 852752 GATGCTAAGGAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22057728 13436 - 122082543 T e micMur3.chr16 35880237 481 - 65901067 I e calJac3.chr5 46084909 17947 - 159171411 T a score=234731.000000 s hg38.chr17_GL383564v2_alt 61329 21 + 133151 GTCTGGGAAGAATGT------GTACAG s panTro5.chr17 16247921 21 + 83181570 GCCTGGGAAGAATGT------GTACAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155406 21 + 83442489 GTCTGGGAAGAATGT------GTACAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990428 21 + 4267968 GTCTGAGAAGAATGT------GTACAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970828 21 - 2193130 GTCTGGGAAGAATGT------GTACAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042926 21 - 77216781 GTCTGGGAAGAATGT------GTACAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955535 21 - 80997621 GTCTGGGAAGAATGT------GTACAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011777 21 + 10377808 GTCTGGGAAGAATGT------GTACAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898894 21 - 8458610 GTCTGAGAAGAATGT------GTACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854632 21 + 75148670 GTCTGGGAAGAATGT------ATACAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078077 21 + 4244037 GTCTGGGAAGAATGT------GTACAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105926 21 + 4569836 GTCTGGGAAAAACGT------GTACAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066962 21 - 159171411 GTTGGGGAGGAATGT------GCATGG i calJac3.chr5 T 17947 C 0 s saiBol1.JH378271 1789033 21 + 3513951 GTCGGGGAGGAATGT------GCATGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837943 21 + 1920343 GTTGGGGAGGGATGT------GCATGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952741 21 - 7032639 GTCGGGCAGGAATGT------GCATGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967028 21 + 8555354 TTCTGGGAAGAATAT------ATATAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775384 21 + 28711273 TCCCGGGAAGAATGT------ATATAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380104 20 + 61074082 -TCTGGAAAACATGT------GGTGGG i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 359254 27 - 852752 TTCTGGAAAACATTTGAGGTAGTACTA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22057728 13436 - 122082543 T e micMur3.chr16 35880237 481 - 65901067 I a score=612602.000000 s hg38.chr17_GL383564v2_alt 61350 42 + 133151 TGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAACT s panTro5.chr17 16247942 42 + 83181570 TGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155427 42 + 83442489 TGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990449 42 + 4267968 TGGGATATT--GTAGGCACACAAATGGTGGCCATTTTTTCAACT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970849 42 - 2193130 TGGGATATT--GTAGGCACACAAATGGTGGCCATGTTTTCAACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30042947 42 - 77216781 TGGGATATT--GTAGGCACACAAATGGTGGCCATATTTTCAACT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955556 42 - 80997621 TGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011798 42 + 10377808 TGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898915 42 - 8458610 TGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854653 42 + 75148670 TGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078098 42 + 4244037 TGGGATATG--GTAGGCACACAAATGGTGGCCATATTTTCAACT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105947 42 + 4569836 TGGGATATT--GTAGGCATACAAATGGTGGCCATATTTTCAACT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46066983 42 - 159171411 TGGGATACT--GTAGGCACACAAATGGTGGCCATATTTGCAACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789054 42 + 3513951 TGGGATAGT--GTAGGCACACAAATGGTGGCCATATTTGCAACT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837964 42 + 1920343 TGGGATATT--GTAGGCACACAAATGGTGGCCATATTTGCAACT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952762 42 - 7032639 TGGGATATT--GTGGGCACACAAATGGTGGCCATATTTGCAACT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967049 42 + 8555354 TGGGACATT--GTGGGCACACACATGGGGGCCATATTTtcaact i proCoq1.NW_012135969v1 C 0 I 284 s otoGar3.GL873537 22775405 42 + 28711273 AGGGATATT--GTGGACACATGCACTGTGGCCACAATTTCAACT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044292 44 - 122082543 TGGTATGCTAAGGAGACACACTTACGATGGCCATATTTTAAATT i mm10.chr11 T 13436 C 0 s canFam3.chr9 21380128 42 + 61074082 CAAGACATT--GTGGGCATATACAGGTGGTCCACATTTTCAACT i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 359281 42 - 852752 CAAGACAGT--GTGGATACATACATGTGGGCCATATTTTCACTC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I a score=998468.000000 s hg38.chr17_GL383564v2_alt 61392 88 + 133151 AGTCAGGCAACACACATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC s panTro5.chr17 16247984 88 + 83181570 AGTCAGGCAACACACATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAG---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155469 88 + 83442489 AGTCAGGCAACACACATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAG---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990491 88 + 4267968 AGTCAGGCAACACAGATTAACTGTGT----AGCATGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970891 84 - 2193130 AGTCAGGCAACACACATTAACTGTGT----AGCGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAG------CCCCCC i nomLeu3.chrUn_GL397460_1 C 0 I 1 s rheMac8.chr16 30042989 88 - 77216781 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCTA---A---GGGAGGC---CAAAGGG-AAGAGAA--GAGCCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955598 88 - 80997621 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGAGAA--GAGCCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011840 88 + 10377808 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCTA---A---GGGAGGC---CAAAGGG-AAGAGAA--GAGCCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898957 88 - 8458610 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATTTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAA--GAGCCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854695 88 + 75148670 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAA--GAGCCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078140 88 + 4244037 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCAGTGATTTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAA--GAGCCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2105989 88 + 4569836 AGTCAGACAACACACATTAACTGTGT----AGTGTGTGTCCGGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGG-AAGGGAA--CAGCCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067025 88 - 159171411 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAAGC---CAAAGGT-AAGAGAA--GAGCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789096 88 + 3513951 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGGTCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838006 88 + 1920343 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGATCTGTGATAGCTAAGCAA---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952804 88 - 7032639 AGCCAGGCAACACACATTAACTGTGC----AGTGTGTGTCCAGTGATCTGTGATAGCAAAGTAA---A---GGGAGGC---CAAAGGT-AAGGGAA--CAGCCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775447 96 + 28711273 TGCCAAACCACATTtattaattgagtgccaactatgtgctcagtcacctgtaataggtaagcaatcgt---ggatgga---caaaggtgaaaggga--cagacG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044336 81 - 122082543 ACTCAAACAGCAC--ATTGAAAGCCT----A---------CAGCAATTTGTGTCAGTTTAGTAA---A---TGTAGATGAACAAAGGTGAAGGGAA--TAGTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21380170 83 + 61074082 CACAAAACAACATGCAATTATAGAAG----AGTCCACG---AG------GTGACAGTTAAGcag---atattgaaggt---caaagatgaagggca--tacatc i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 359323 95 - 852752 CACCAAGCAGCACATATTAATAGTCT----ATGATGTGCCCAGTGATCTGTGATAGTCACACCA---ATGTGGATGGC--ACAAAGGTGAAGGGAACCCAGCCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=13073.000000 s hg38.chr17_GL383564v2_alt 61480 1 + 133151 C s gorGor5.CYUI01015385v1 3990579 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970976 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 I 1 C 0 s rheMac8.chr16 30043077 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955686 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011928 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899045 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854783 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078228 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106077 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067113 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789184 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838094 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6952892 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775543 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044417 1 - 122082543 C i mm10.chr11 C 0 C 0 s canFam3.chr9 21380254 1 + 61074082 c i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 359418 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e panPan2.chr17 16155557 0 + 83442489 C e panTro5.chr17 16248072 0 + 83181570 C a score=899099.000000 s hg38.chr17_GL383564v2_alt 61481 77 + 133151 TATCTCAGGGGGCTAACAATGGAGGAGTGGTGGC------AGGAGCTGGCCAGTTGTAGGAATAACATTTGTGTAAGGCACAT--------------- s panTro5.chr17 16248072 77 + 83181570 TGTCTCAGGGGGCTAACAATGGAGGAGTGGTGGC------AGGAGCTGGCCAGTCGTAGGAATAACATTTGTGTAAGGCACAT--------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155557 77 + 83442489 TGTCTCAGGGGGCTAACAATGGAGGAGTGGTGGC------AGGAGCTGGCCAGTCGTAGGAATAACATTTGTGTAAGGCACAT--------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990580 76 + 4267968 TGCCTCA-GGGGCTAACAATGGAAGAGTGGTGGT------AGGAGCTGGCCAGTCGTAGGAATAACATTTGTGTAAGGCACAT--------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1970977 77 - 2193130 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCATAGGAATAACATTTGTGCAAGGCACAT--------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043078 77 - 77216781 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGGAAGGCACAT--------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955687 77 - 80997621 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGGAAGGCACAT--------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2011929 77 + 10377808 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGGAAGGCACAT--------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899046 76 - 8458610 -GCCTCAGGGGGCTAACAATGGAGGAGTGGTGGG------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854784 77 + 75148670 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078229 77 + 4244037 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106078 77 + 4569836 TGCCTCAGGGGGCTAACAATGGAGGAGTGGTGGT------AGGAGCTGGCCAGTCTTAGGAATAACATTTGTGTAAGGCACAT--------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067114 77 - 159171411 TGCCTCAGGGGGCTAACAACAGAGGAGTGGTGGT------AGGACCTGGCCGGTCATAGGAATAGCATTTGTGTAAGGCACAT--------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789185 77 + 3513951 TGCCTCAGGGGGCTAACAACAGAGGAGTGGTGGT------AGGACCTGGCCAGTCATAGGAATAACATTTGTGTAAGGCACAT--------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838095 77 + 1920343 TGCCTCGGGGGGCTAACAACAGAGGAGTGGTGGT------AGGGCCTGGCCAGTCATAGGAATAACATTTGTGTAAGGCACAT--------------- i cebCap1.NW_016107730v1 C 0 I 319 s aotNan1.NW_018502359v1 6952893 77 - 7032639 TGCCTCAGGGGGCTAACAACAGAGGAGTGGTGGC------AGGACCTGGCCAGTCATAGGAATAAAATTTGTGTAAGGCACAT--------------- i aotNan1.NW_018502359v1 C 0 I 338 s otoGar3.GL873537 22775544 73 + 28711273 TGCC-CAGGGGGCTAGCCATGGAGACATGGT---------AGGGGCTGGCCAGGCATAGCAGTAACTGTTAGGTGAGGCTGAT--------------- i otoGar3.GL873537 C 0 I 5 s mm10.chr11 22044418 83 - 122082543 TGTCTCTGAAAGCTACCAACAGAGAGGTGAGGGGTAGGTAGGGAGATTGCCAGTCACAGAGTTGCATGTTGGGTTAGGTGGAT--------------- i mm10.chr11 C 0 I 5 s canFam3.chr9 21380255 74 + 61074082 tgcctcagggagctaacgatggagaagTGGTGGT-------GGAGAGAGT--GTTATGACAATAATTTCTGGGTAAGGTGGAT--------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359419 63 - 852752 TGCCTT---------------------TGGTGTT------AGGG---AGATTGGTACAAAAATAAC-----TGTCAGGCACATCAAAGTGTATTATAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=10028.000000 s hg38.chr17_GL383564v2_alt 61558 1 + 133151 T s panTro5.chr17 16248149 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155634 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990656 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971054 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043155 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955764 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012006 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899122 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854861 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078306 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106155 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067191 1 - 159171411 C i calJac3.chr5 C 0 I 357 s saiBol1.JH378271 1789262 1 + 3513951 C i saiBol1.JH378271 C 0 I 328 s otoGar3.GL873537 22775622 1 + 28711273 T i otoGar3.GL873537 I 5 C 0 s mm10.chr11 22044506 1 - 122082543 T i mm10.chr11 I 5 C 0 s canFam3.chr9 21380329 1 + 61074082 T i canFam3.chr9 C 0 I 5 s dasNov3.JH570468 359482 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6952970 338 - 7032639 I e cebCap1.NW_016107730v1 1838172 319 + 1920343 I a score=19548.000000 s hg38.chr17_GL383564v2_alt 61559 2 + 133151 AA s panTro5.chr17 16248150 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155635 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990657 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971055 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043156 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955765 2 - 80997621 AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012007 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899123 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854862 2 + 75148670 AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078307 2 + 4244037 AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106156 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067549 2 - 159171411 AA i calJac3.chr5 I 357 C 0 s saiBol1.JH378271 1789591 2 + 3513951 aa i saiBol1.JH378271 I 328 C 0 s cebCap1.NW_016107730v1 1838491 2 + 1920343 aa i cebCap1.NW_016107730v1 I 319 C 0 s otoGar3.GL873537 22775623 2 + 28711273 AA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044507 2 - 122082543 AA i mm10.chr11 C 0 C 0 s canFam3.chr9 21380335 1 + 61074082 G- i canFam3.chr9 I 5 C 0 s dasNov3.JH570468 359483 2 - 852752 AA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6952970 338 - 7032639 I a score=1245585.000000 s hg38.chr17_GL383564v2_alt 61561 99 + 133151 GTTCCAGGAGACCTC-AAGAGTATGAGATAATA-TTTTT-GAAAAGCACAATTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGTAG s panTro5.chr17 16248152 99 + 83181570 GTTCCAGGAGACCTC-AAGAGTATGAGATAATA-TTTTT-GAAAAGCACAATTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155637 99 + 83442489 GTTCCAGGAGACCTC-AAGAGTATGAGATAATA-TTTTT-GAAAAGCACAATTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990659 99 + 4267968 GTTCCAGGAGACCTC-AAGAGTATGAGATAATA-TTTTT-GAAAAGCACAATTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGGGTTTGGTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971057 99 - 2193130 GTTCCAGGAGACCTC-AAGAGTATGAGATAATA-TTTTT-GAAAAGCACAATTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043158 99 - 77216781 GTTCCAGGAGACCTC-AAGTGTATGAGATAATA-TATTT-GAAAAGGACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955767 99 - 80997621 GTTCCAGGAGACCTC-AAGTGTATGAGATAATA-TATTT-GAAAAGGACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012009 99 + 10377808 GTTCCAGGAGACCTC-AAGTGTATGAGATAATA-TATTT-GAAAAGGACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899125 99 - 8458610 GTTCCAGGAGACCTC-AAGTGTATCAGATAATA-TATTT-GAAAAGGACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854864 99 + 75148670 GTTCCAGGAGACTTC-AAGTGTATGAGATAATA-TATTT-GAAAAGGACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078309 99 + 4244037 GTTCCAGGAGACCTC-AAGTGTATGAGATAATA-TATTT-GAAAAGCACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106158 99 + 4569836 GTTCCAGGAGACCTC-AAGTGTATGAGATAATA-TTTTT-GAAAAGGACAGTTT-------------TTCCACCTCTGCACATGGCATTCTGG--GAGAGAGAGAAGCATTTGGTAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067551 93 - 159171411 GTTCCAGGAGAGCCT-------AAGAGATAATA-TTTTT-GAAAAGGACAATTT-------------TTCCACCTGTGAACATGGCATTTTGG--GAAAGGGAGGAGGATTTGGTAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789593 100 + 3513951 GTTCCAGGAGAGCCTTAAGAGCATGAGATAATA-TTTTT-GAAAAGGACAATTT-------------TTCCACCTGTGAACATGGCATTCTGG--GAAAGGAAGAAGGATTTGGTAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838493 99 + 1920343 GTTCCAGGAGAGCCT-AAGAGCATGAGATAATA-TTTTT-GAAAAGGACAATTT-------------TTCCACCTATGAACATAGCATTCTGG--GAAAGGGAGAAGGATTTGGTAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953308 99 - 7032639 GTTCCAGGGGAGCCT-AAGAGCATGAGATAATA-TTTTT-GAGAAGGACAATTC-------------TTCCACCTGTGAACATGGCATTCTGG--GAAAGGGAGAAGGATTTGGTAA i aotNan1.NW_018502359v1 I 338 C 0 s otoGar3.GL873537 22775625 100 + 28711273 GTTATACATGAGTTC-AGGAGAATGAGATAATA-TTTTA-CAAAAGGAAAATTC--------------CCCACCTCTGCACATGACATTCTGGGAGAGAGAGAGAAGGATTTGATAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044509 99 - 122082543 CTTCCTCTAGAGCAC-AACCATACAAGACGATAGTTTTC-CAAAAGCACAATTG--------------TCCAGTTCTGCACAAGGTATTGTGG--GTAAGGGAGAAGGGCTTGGTGA i mm10.chr11 C 0 I 17 s canFam3.chr9 21380336 90 + 61074082 GTTCCATGAAATCTA-AGGAGC--------ATA-TTTTT-CAAAAGGACAGTTT--------------TCCACCTTAGCACATGGTATTCTGG--GATGGGGAGAAGGATTTGATAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359485 113 - 852752 CTTCCACAAGCGCTT-AAGAGGATAAGATAATA-TTTTTCAAAAAGGACAATTTAAGAAGGCACATTTTCCACCTTTGCACATGGCATTCCAG--GAGAGAGAGAAAGACTTGGTAA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=52023.000000 s hg38.chr17_GL383564v2_alt 61660 4 + 133151 TAAT s panTro5.chr17 16248251 4 + 83181570 TAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155736 4 + 83442489 TAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990758 4 + 4267968 TAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971156 4 - 2193130 TAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043257 4 - 77216781 TAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955866 4 - 80997621 TAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012108 4 + 10377808 TAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899224 4 - 8458610 TAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854963 4 + 75148670 TAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078408 4 + 4244037 TAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106257 4 + 4569836 TAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067644 4 - 159171411 TAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789693 4 + 3513951 TAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838592 4 + 1920343 TAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953407 4 - 7032639 TAAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775725 4 + 28711273 CAAC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380426 4 + 61074082 CAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359598 4 - 852752 CAAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=15300.000000 s hg38.chr17_GL383564v2_alt 61664 1 + 133151 C s panTro5.chr17 16248255 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155740 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990762 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971160 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043261 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955870 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012112 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899228 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854967 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078412 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106261 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067648 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789697 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838596 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953411 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775729 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 359602 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e canFam3.chr9 21380430 0 + 61074082 C a score=12376.000000 s hg38.chr17_GL383564v2_alt 61665 1 + 133151 A s panTro5.chr17 16248256 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155741 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990763 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971161 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043262 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955871 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012113 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899229 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854968 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078413 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106262 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067649 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789698 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838597 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953412 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 359603 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=2597578.000000 s hg38.chr17_GL383564v2_alt 61666 281 + 133151 GAACTTGATTCTggctgggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggataacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaaatacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaggctgaggcaggagaatcgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcgcaccactgcactccagcc s panTro5.chr17 16248257 281 + 83181570 GAACTTGGTTCTggctgggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaaatacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaagctgaggcaggagaattgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcacaccactgcactccagcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16155742 280 + 83442489 GAACTTGGTTCTggctgggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaaatac-aaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaagctgaggcaggagaattgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcacaccactgcactccagcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3990764 281 + 4267968 GAACTTGATTCTggctgggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggatcgcttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatcgctaccaaaaatacaaaaaattagccaggcatggtgacgcatgcctatgatcctaactacttgggaggctgaggcaggagaatcgcttaaaactgggaggtgtagtgagccttggctcccacttgcagtgagccaagatcgcaccactgcactccagcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971162 281 - 2193130 GAACTTGATTCTggctgggtgcaatggctcatgcctataatc----cactttgggaggttgaggtgggtggattgcttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatccctaccaaaaacacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactacttgggaggctgaggcaggagaattgcttgaacctgggaggcatagtgagccttggctcccacttgcagtgagccaagatcgcaccactgcactccagcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043263 285 - 77216781 GAACTTGATTCTggccgggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaaatacaaaacattagctaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccccttgcagtgagccaagatcgcgccactgcactccagct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27955872 285 - 80997621 GAACTTGATTCTggccgggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaaatgcaaaacattagccaggcatggtgacgcatacctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccccttgcagtgagccaagatcacgccactgcactccagct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012114 285 + 10377808 GAACTTGATTCTggccgggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaaatacaaaacattagccaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccccttgcagtgagccaagatcgcgccactgcactccagct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899230 285 - 8458610 GAACTTGATTCTGGGTgggtgcaatggctcatgcctataatcccagcactttgggaggttgaggcgggtagattgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaaatacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgtggcaagagaatcacttgacactggaaggtgaagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64854969 285 + 75148670 GAACTTGATTCTGGGTgggtgcaatggctcatgcctgtaatcccagcactttgggaggttgaggcgggtggatcgcttgaggtcaggagttcaagactatcctggccaacatggtgaaaccccatctctatcaaaaatacaaaaaattagccaggcatggtgatgcatgcctgtgatcctaactgcttgggaggctgaggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078414 285 + 4244037 GAACTTGATTCTGGGTgggtgcaatggctcatgcctataatcccagcactttgggaggttgaagcaggtggattgcttgaggtcaggagttcaagaccatcctggccaacatggtgaaaccccatctctatcaaaaatacaaaaaattagccaggcatggtgacgcatgcctgtgatcctaactgcttgggaggctgtggcaagagaatcacttgacactgggaggtgaagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106263 285 + 4569836 GAACTTGATTCTggctgggtgcaatggctcatgcctataatcccagcaatttgggaggttgaggcaggtggaccgcttgaggtcaggagttcaagaccattctggccaacatggtgaaaccccatctctatcaaaaatacaaaaaattagccaggcatggtgatgcatgcctgtgatcctaactacttgggaggctgagacaagagaattgcttgacactgggaggcgtagtgagccttggctcccacttgcagtgagccaagatcgcgccactgcactccagct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067650 269 - 159171411 GAACTTGATTCTggccgggtacagtggctcatgcctgtaatcccagcactttgggaggctcacgcgagtggattgcttgaggtcaggagttcaagcccagcctggccgacatggtgaaaccacatctctaccaaacatacaaaaaattatctaggtgttgtggtgcatgcctgtgatgctagctacttgggaggctgaggcaggagaattgcctgaaacttggaggtggagg----------------ttgcagtgagctgagatcacttcactgcactccagcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789699 269 + 3513951 GAACTTGATTCTggctgggtccattggctcatgcctgtaataccagcactttgggaggctgacacgagtggattgcttgaggtcaggagttcaagcccagcctggccaacatggtgaaaccccatctctaccaaaaatacaaaaaattatccaggtgttgtggtacatgcctgtaatgctagctacttgggaggctgaggcaggagaattgcctgaaccctggaggtggagg----------------ctgcagtgagctgagattactccactgcactccagcc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838598 269 + 1920343 GAACTTGATTCTggcctggtacattggctcatgcctgtaatcccagaactttgggaggctgacgcgagtggattgcttgaggtcaggagttcaagcccagcctggccaatatggtgaaaccccatctctaccaaaaatacaaaaaattatccaggtgctgtggtacatgcctgtaatgctagctacttgggaggctgaggcaggagaattgcctgaaccttggaggtagagg----------------ttgcagtgagctgagatcactccactgcactccagac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953413 256 - 7032639 GAACTTGATTCTggccgggtacagtggctcatgcctgtaatcccagcactttgggaggctgacgcaagtggattgcttgaggtcag-------------gcctagccaacatggtgaaaccccatctctaccaaaaatacaaaaaattttccaggtgttgtggtacatgcctgtaatgctagctacttgggaggctgaggcaggagaattacctgaaccttggaggtggagg----------------ttgcagtgagctgagatcactccactgcactccagcc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=6718.000000 s hg38.chr17_GL383564v2_alt 61947 3 + 133151 tag s panTro5.chr17 16248538 3 + 83181570 tag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156022 3 + 83442489 tag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991045 3 + 4267968 tag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971443 3 - 2193130 tag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46067919 3 - 159171411 tgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789968 3 + 3513951 tga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838867 3 + 1920343 tgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953669 3 - 7032639 tgg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C e macNem1.NW_012014910v1 2012399 0 + 10377808 C e colAng1.NW_012122154v1 2106548 0 + 4569836 C e manLeu1.NW_012106252v1 2078699 0 + 4244037 C e chlSab2.chr16 64855254 0 + 75148670 C e cerAty1.NW_012006043v1 1899515 0 - 8458610 C e rheMac8.chr16 30043548 0 - 77216781 C e macFas5.chr16 27956157 0 - 80997621 C a score=231682.000000 s hg38.chr17_GL383564v2_alt 61950 24 + 133151 gcaacagagcaagaccctgtctca s panTro5.chr17 16248541 24 + 83181570 gcaacagagcaagaccctgtctca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156025 24 + 83442489 gcaacagagcaagaccctgtctca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991048 24 + 4267968 gcaacagagcaagaccctgtctca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971446 24 - 2193130 gcagcagagtaagaccctgtctca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043548 24 - 77216781 gtctcagagcaagaccctgtctca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956157 24 - 80997621 gtctcagagcaagaccctgtctca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012399 24 + 10377808 gtctcagagcaagaccctgtctca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899515 24 - 8458610 gtctcagagcaagaccctgtctca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855254 24 + 75148670 gtctcagagcaagaccctgtctca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078699 24 + 4244037 gtctcagagcaagaccctgtctca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106548 24 + 4569836 gtctcagagcaagaccctatctca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067922 24 - 159171411 gcaacagagcaagaccctctctca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789971 24 + 3513951 gcaacagagcaagaccctgtctca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838870 24 + 1920343 gcaacagagtaagaccctgtctca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953672 24 - 7032639 gcaacagagcaagaccctgtctca i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=20880.000000 s hg38.chr17_GL383564v2_alt 61974 5 + 133151 aaaac s panTro5.chr17 16248565 5 + 83181570 aaaac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156049 5 + 83442489 aaaac i panPan2.chr17 C 0 C 0 s cerAty1.NW_012006043v1 1899539 5 - 8458610 aaaac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855278 5 + 75148670 aaaac i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2106572 5 + 4569836 aaaac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067946 5 - 159171411 aaaac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1789995 5 + 3513951 aaaac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838894 5 + 1920343 aaaac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953696 5 - 7032639 aaaac i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C e macNem1.NW_012014910v1 2012423 0 + 10377808 C e manLeu1.NW_012106252v1 2078723 0 + 4244037 C e rheMac8.chr16 30043572 0 - 77216781 C e macFas5.chr16 27956181 0 - 80997621 C e nomLeu3.chrUn_GL397460_1 1971470 0 - 2193130 C e gorGor5.CYUI01015385v1 3991072 0 + 4267968 C a score=137655.000000 s hg38.chr17_GL383564v2_alt 61979 19 + 133151 aaaacaaaacaaaacaa---------------------------------aa s panTro5.chr17 16248570 19 + 83181570 aaaacaaaacaaaacaa---------------------------------aa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156054 19 + 83442489 aaaacaaaacaaaacaa---------------------------------aa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991072 14 + 4267968 -----aaaacaaaacaa---------------------------------aa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971470 19 - 2193130 aaaacaaaacaaagcaa---------------------------------aa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043572 19 - 77216781 aaaacaaaacaaaacaa---------------------------------aa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956181 19 - 80997621 aaaacaaaacaaaacaa---------------------------------aa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012423 19 + 10377808 aaaacaaaacaaaacaa---------------------------------aa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899544 14 - 8458610 -----aaaacaaaacaa---------------------------------aa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855283 19 + 75148670 aaaacaaaacaaaacaa---------------------------------aa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078723 19 + 4244037 aaaacaaaacaaaacaa---------------------------------aa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106577 19 + 4569836 aaaacaaaacaaaacaa---------------------------------aa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067951 47 - 159171411 -----aaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790000 14 + 3513951 -----aaaacaaaagaa---------------------------------aa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838899 14 + 1920343 -----aaaacaaaacaa---------------------------------aa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953701 14 - 7032639 -----taaacaaaacaa---------------------------------aa i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C e canFam3.chr9 21380430 0 + 61074082 C e otoGar3.GL873537 22775730 0 + 28711273 C a score=25022.000000 s hg38.chr17_GL383564v2_alt 61998 2 + 133151 ag s panTro5.chr17 16248589 2 + 83181570 ag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156073 2 + 83442489 ag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991086 2 + 4267968 ag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971489 2 - 2193130 ag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043591 2 - 77216781 ag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956200 2 - 80997621 ag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012442 2 + 10377808 ag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899558 2 - 8458610 ag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855302 2 + 75148670 ag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078742 2 + 4244037 ag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106596 2 + 4569836 ag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46067998 2 - 159171411 aG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790014 2 + 3513951 ag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838913 2 + 1920343 ag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953715 2 - 7032639 ag i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775730 2 + 28711273 AA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380430 2 + 61074082 AA i canFam3.chr9 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e dasNov3.JH570468 359604 0 - 852752 C a score=86277.000000 s hg38.chr17_GL383564v2_alt 62000 6 + 133151 aaCTTG s panTro5.chr17 16248591 6 + 83181570 aaCTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156075 6 + 83442489 aaCTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991088 6 + 4267968 aaCTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971491 6 - 2193130 aaCTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043593 6 - 77216781 aaCTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956202 6 - 80997621 aaCTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012444 6 + 10377808 aaCTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899560 6 - 8458610 aaCTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855304 6 + 75148670 aaCTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078744 6 + 4244037 aaCTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106598 6 + 4569836 aaCTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068000 6 - 159171411 AACTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790016 6 + 3513951 aaCTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838915 6 + 1920343 aaCTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953717 6 - 7032639 aaCTTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22775732 6 + 28711273 TATTTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380432 6 + 61074082 AATTTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359604 6 - 852752 AATTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e proCoq1.NW_012135969v1 2967091 284 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=115577.000000 s hg38.chr17_GL383564v2_alt 62006 7 + 133151 ATTCCAA s panTro5.chr17 16248597 7 + 83181570 ATTCCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156081 7 + 83442489 ATTCCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991094 7 + 4267968 ATTCCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971497 7 - 2193130 ATTCCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043599 7 - 77216781 ATTCCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956208 7 - 80997621 ATTCCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012450 7 + 10377808 ATTCCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899566 7 - 8458610 ATTCCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855310 7 + 75148670 ATTCCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078750 7 + 4244037 ATTCCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106604 7 + 4569836 ATTCCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068006 7 - 159171411 ATTCCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790022 7 + 3513951 ATTCCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1838921 7 + 1920343 ATTCCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953723 7 - 7032639 ATTCCAA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967375 7 + 8555354 ATTCCAA i proCoq1.NW_012135969v1 I 284 C 0 s otoGar3.GL873537 22775738 7 + 28711273 ATCTCAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380438 7 + 61074082 ATTCCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359610 7 - 852752 AATCCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044608 17 - 122082543 I e micMur3.chr16 35880237 481 - 65901067 I a score=824264.000000 s hg38.chr17_GL383564v2_alt 62013 59 + 133151 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTATTGTGTGCA s panTro5.chr17 16248604 59 + 83181570 CTAACTCCAGCCACTGAGAATTCACAGGTTGTGTCATTAAGCCCAAGGTATTATGTGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156088 59 + 83442489 CTAACTCCAGCCACTGAGAATTCACAGGTTGTGTCATTAAGCCCAAGGTATTATGTGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991101 58 + 4267968 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAA-GTATTATGTGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971504 59 - 2193130 CAAACTCCAGCCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTATTATGTGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043606 59 - 77216781 CTAACTCCAACCACTGAGAATTCATACGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956215 59 - 80997621 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012457 59 + 10377808 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899573 59 - 8458610 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855317 59 + 75148670 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078757 59 + 4244037 CTAACTCCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106611 59 + 4569836 CTAACTTCAACCACTGAGAATTCATAGGTTGTGTCATTAAGCCCAAGGTAGTATGTGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068013 59 - 159171411 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTTGTTAAGCCCAAGGTATTCTGTGCA i calJac3.chr5 C 0 I 5 s saiBol1.JH378271 1790029 59 + 3513951 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCGTTAAGCCCAAGGTATTCTGTGCA i saiBol1.JH378271 C 0 I 5 s cebCap1.NW_016107730v1 1838928 59 + 1920343 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCGTTAAGCCCAAGGTATTCTGTGCA i cebCap1.NW_016107730v1 C 0 I 22 s aotNan1.NW_018502359v1 6953730 59 - 7032639 CTAACTCCAGCCACTGAGAATTCATAGGTTGTGTCGTTAAGCCCAAGGTATTCTGTGCA i aotNan1.NW_018502359v1 C 0 I 22 s proCoq1.NW_012135969v1 2967382 59 + 8555354 CTAACTCCAACCACTGGGAATTCATAGGTTGTCTCATTAAGCACAAGGAACTCTGTGCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775745 58 + 28711273 CTAACTCTACCCAGTAAGAATTCATAGGATGTCTCATTAAGCATAAGGTCCTAT-TGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044625 59 - 122082543 CTAATTCCAACCCCTGATAATTCATAGGTTGCTCCTGTAAGTACAAGTTACCGTGTGTG i mm10.chr11 I 17 I 13 s canFam3.chr9 21380445 51 + 61074082 CTATCACGAACCACTGAAAATTCATGGGTGG--------AATTCATAGGGCTCTCTCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359617 57 - 852752 CTAACTCCAACTGCTGAGAAATCATAGGTTGTTTC--TAGGTCCACAGGCCTCCCTCCT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I a score=7111.000000 s hg38.chr17_GL383564v2_alt 62072 1 + 133151 T s panTro5.chr17 16248663 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156147 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991159 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971563 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043665 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956274 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012516 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899632 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855376 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078816 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106670 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068077 1 - 159171411 T i calJac3.chr5 I 5 C 0 s saiBol1.JH378271 1790093 1 + 3513951 T i saiBol1.JH378271 I 5 C 0 s proCoq1.NW_012135969v1 2967441 1 + 8555354 C i proCoq1.NW_012135969v1 C 0 I 16 s otoGar3.GL873537 22775803 1 + 28711273 C i otoGar3.GL873537 C 0 I 8 s mm10.chr11 22044697 1 - 122082543 T i mm10.chr11 I 13 C 0 s canFam3.chr9 21380496 1 + 61074082 C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359674 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6953789 22 - 7032639 I e cebCap1.NW_016107730v1 1838987 22 + 1920343 I a score=23343.000000 s hg38.chr17_GL383564v2_alt 62073 6 + 133151 TAAAAC s panTro5.chr17 16248664 6 + 83181570 TAAAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156148 6 + 83442489 TAAAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991160 6 + 4267968 TAAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971564 6 - 2193130 TAAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043666 6 - 77216781 TAAAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956275 6 - 80997621 TAAAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012517 6 + 10377808 TAAAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899633 6 - 8458610 TAAAAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855377 6 + 75148670 TAAAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078817 6 + 4244037 TAAAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106671 6 + 4569836 TAAAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068078 6 - 159171411 TAGGGC i calJac3.chr5 C 0 I 10 s saiBol1.JH378271 1790094 6 + 3513951 TAGGGC i saiBol1.JH378271 C 0 I 10 s otoGar3.GL873537 22775812 6 + 28711273 TCTGTC i otoGar3.GL873537 I 8 C 0 s mm10.chr11 22044698 4 - 122082543 --TGAC i mm10.chr11 C 0 I 2 s canFam3.chr9 21380497 2 + 61074082 ---AA- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359675 2 - 852752 TC---- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967442 16 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I e aotNan1.NW_018502359v1 6953789 22 - 7032639 I e cebCap1.NW_016107730v1 1838987 22 + 1920343 I a score=32148.000000 s hg38.chr17_GL383564v2_alt 62079 3 + 133151 CTC s panTro5.chr17 16248670 3 + 83181570 CTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156154 3 + 83442489 CTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991166 3 + 4267968 CTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971570 3 - 2193130 CTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043672 3 - 77216781 TTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956281 3 - 80997621 TTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012523 3 + 10377808 TTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899639 3 - 8458610 TTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855383 3 + 75148670 TTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078823 3 + 4244037 TTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106677 3 + 4569836 CTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068094 3 - 159171411 CTC i calJac3.chr5 I 10 C 0 s saiBol1.JH378271 1790110 3 + 3513951 CTC i saiBol1.JH378271 I 10 C 0 s cebCap1.NW_016107730v1 1839009 3 + 1920343 CTC i cebCap1.NW_016107730v1 I 22 C 0 s aotNan1.NW_018502359v1 6953811 3 - 7032639 CTC i aotNan1.NW_018502359v1 I 22 C 0 s otoGar3.GL873537 22775818 3 + 28711273 CAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044704 3 - 122082543 CTC i mm10.chr11 I 2 C 0 s canFam3.chr9 21380499 2 + 61074082 -CC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359677 3 - 852752 CTA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2967442 16 + 8555354 I e micMur3.chr16 35880237 481 - 65901067 I a score=261488.000000 s hg38.chr17_GL383564v2_alt 62082 21 + 133151 CTCCTAAAGCCATTCTAAACC s panTro5.chr17 16248673 21 + 83181570 CTCCTAAAGCCATTCTAAACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156157 21 + 83442489 CTCCTAAAGCTATTCTAAACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991169 21 + 4267968 CTCCTAAAGCCATTCTAAACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971573 21 - 2193130 CTCCTAAAGCCATTCTAAACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043675 21 - 77216781 CTCCTAAAGCCATTCTAAACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956284 21 - 80997621 CTCCTAAAGCCATTCTAAACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012526 21 + 10377808 CTCCTAAAGCCATTCTAAACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899642 21 - 8458610 CTCCTAAAGCCATTCTAAACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855386 21 + 75148670 CTCCTAAAGCCATTCTAAACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078826 21 + 4244037 CTCCTAAAGCCATTCTAAACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106680 21 + 4569836 CTCCTAAAGCCATTCTAAACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068097 21 - 159171411 CTCCCCTATCCATTGTAAACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790113 21 + 3513951 CTCCCCTACCCACTCTAAACC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839012 21 + 1920343 CTTCCCTATCCACTCTAAACC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953814 21 - 7032639 CTCCCCTATCCATTCTAAACC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967458 21 + 8555354 CTCCCCAATCCATGCTAATCC i proCoq1.NW_012135969v1 I 16 C 0 s otoGar3.GL873537 22775821 20 + 28711273 -CCTGCAACACCTTCTCATCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044707 21 - 122082543 CTCTCCAACCCATTGTTAACC i mm10.chr11 C 0 I 13735 s canFam3.chr9 21380501 21 + 61074082 ATCCTCAATCCATTCTAAATC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359680 20 - 852752 -TCCCTAGTGCACTGTAAACC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880237 481 - 65901067 I a score=137579.000000 s hg38.chr17_GL383564v2_alt 62103 9 + 133151 TCCTTGTCC s panTro5.chr17 16248694 9 + 83181570 TCCTTGTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156178 9 + 83442489 TCCTTGTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991190 9 + 4267968 TCCTTGTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971594 9 - 2193130 TCCTTGTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043696 9 - 77216781 TCCTTGTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956305 9 - 80997621 TCCTTGTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012547 9 + 10377808 TCCTTGTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899663 9 - 8458610 TCCTTGTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855407 9 + 75148670 TCCTTGTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078847 9 + 4244037 TCCTTGTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106701 9 + 4569836 TCCTTGTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068118 9 - 159171411 TCCTTGTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790134 9 + 3513951 TCCTTGTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839033 9 + 1920343 TCCTTGTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953835 9 - 7032639 TCCTTGTCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967479 9 + 8555354 TCCCTGTCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775841 9 + 28711273 TTGCTGTCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380522 9 + 61074082 TCTGTGTCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359700 9 - 852752 TCTGTGTCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22044728 13735 - 122082543 I e micMur3.chr16 35880237 481 - 65901067 I a score=38538.000000 s hg38.chr17_GL383564v2_alt 62112 4 + 133151 TCCT s panTro5.chr17 16248703 4 + 83181570 TCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156187 4 + 83442489 TCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991199 4 + 4267968 TCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971603 4 - 2193130 TCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043705 4 - 77216781 TTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956314 4 - 80997621 TTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012556 4 + 10377808 TTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899672 4 - 8458610 TTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855416 4 + 75148670 TTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078856 4 + 4244037 TTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106710 4 + 4569836 TTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068127 4 - 159171411 TCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790143 4 + 3513951 TCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839042 4 + 1920343 TCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953844 4 - 7032639 TCCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2967488 3 + 8555354 CCC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775850 3 + 28711273 CCC- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22058463 4 - 122082543 TCCT i mm10.chr11 I 13735 C 0 s canFam3.chr9 21380531 4 + 61074082 TCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359709 4 - 852752 TCCC i dasNov3.JH570468 C 0 I 8 e micMur3.chr16 35880237 481 - 65901067 I a score=1296974.000000 s hg38.chr17_GL383564v2_alt 62116 65 + 133151 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC s panTro5.chr17 16248707 65 + 83181570 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156191 65 + 83442489 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991203 65 + 4267968 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971607 65 - 2193130 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTTCTGTGGACCCTGTGGCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043709 65 - 77216781 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956318 65 - 80997621 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012560 65 + 10377808 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899676 65 - 8458610 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855420 65 + 75148670 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078860 65 + 4244037 AGGCTCCCCTGCAACCCATGCGCCACCACCAGTGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106714 65 + 4569836 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068131 65 - 159171411 AGGCTCCCCTGCAACCCATGTGTGACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790147 65 + 3513951 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839046 65 + 1920343 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953848 65 - 7032639 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGCCAACTCCTGTGGACCCTGTGGCAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880718 65 - 65901067 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCCAGTGGCAACCCCTGTGGACCCTGCGGCTG i micMur3.chr16 I 481 C 0 s proCoq1.NW_012135969v1 2967491 65 + 8555354 AGGCTCCCCTGCAACCCATGCGCCACCACCAATGCCGGTGGCAACTCCTGTGGACCCTGTGGCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775853 65 + 28711273 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22058467 65 - 122082543 AGGCTGCCCTGCAACCCCTGTGCCACCACCAATGCCTGTGACAAGCCCATTGGACCCTGTGTCAC i mm10.chr11 C 0 T 13702 s canFam3.chr9 21380535 65 + 61074082 AGGCTCCCCTGCAACCCATGTGCCACCACCAATGCTTGCGGCAATTCCTGTGGGTCCTGTGGCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359721 65 - 852752 AGGCTCCCCTGCAACCCATGTGCCACCACCAACGCATGTGGCAACTCCTGTGGACCCCGTGGCTG i dasNov3.JH570468 I 8 C 0 a score=284445.000000 s hg38.chr17_GL383564v2_alt 62181 17 + 133151 CTCTCAAAAGGGTTGCT s panTro5.chr17 16248772 17 + 83181570 CTCTCAAAAGGGTTGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156256 17 + 83442489 CTCTCAAAAGGGTTGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991268 17 + 4267968 CTCTCAAAAGGGTTGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971672 16 - 2193130 CTCTC-AAAGGGTTGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043774 17 - 77216781 CTCTCAAAAGTGTTGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956383 17 - 80997621 CTCTCAAAAGTGTTGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012625 17 + 10377808 CTCTCAAAAGTGTTGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899741 17 - 8458610 CTCTCAAAAGTGTTGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855485 17 + 75148670 CTCTCAAAAGTGTTGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078925 17 + 4244037 CTCTCAAAAGTGTTGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106779 17 + 4569836 CTCTCAAAAGTGTTGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068196 17 - 159171411 CTCTCAAAAGTGTTGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790212 17 + 3513951 CTCTCAAAAGTGTTGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839111 17 + 1920343 CTCTCAAAAGTGTTGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953913 17 - 7032639 CTCTCAGAAGTGTTGCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880783 17 - 65901067 CTCTCAAAAGTGTGGCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967556 17 + 8555354 CTCTCAAAAGTGTGGCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775918 17 + 28711273 CTCTCAAAAGTGTTGCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380600 17 + 61074082 CTCTCAAACACGTTGCT i canFam3.chr9 C 0 I 6 s dasNov3.JH570468 359786 17 - 852752 CTCTCAACAACGTTGCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22058532 13702 - 122082543 T a score=81206.000000 s hg38.chr17_GL383564v2_alt 62198 5 + 133151 -GTAAT s panTro5.chr17 16248789 5 + 83181570 -GTAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156273 5 + 83442489 -GTAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991285 5 + 4267968 -GCAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971688 5 - 2193130 -GTAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043791 5 - 77216781 -GTAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956400 5 - 80997621 -GTAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012642 5 + 10377808 -GTAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899758 5 - 8458610 -GTAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855502 5 + 75148670 -GTAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078942 5 + 4244037 -GTAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106796 5 + 4569836 -GTAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068213 5 - 159171411 -GTAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790229 5 + 3513951 -GTAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839128 5 + 1920343 -GTAAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953930 5 - 7032639 -GTAAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880800 5 - 65901067 -GTAAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967573 5 + 8555354 -GTAAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775935 5 + 28711273 -GTAAT i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 359803 6 - 852752 GTTAAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22058532 13702 - 122082543 T e canFam3.chr9 21380617 6 + 61074082 I a score=127196.000000 s hg38.chr17_GL383564v2_alt 62203 8 + 133151 TGAAAAGC s panTro5.chr17 16248794 8 + 83181570 TGAAAAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156278 8 + 83442489 TGAAAAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991290 8 + 4267968 TGAAAAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971693 8 - 2193130 TGAAAAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043796 8 - 77216781 TGAAAAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956405 8 - 80997621 TGAAAAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012647 8 + 10377808 TGAAAAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899763 8 - 8458610 TGAAAAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855507 8 + 75148670 TGAAAAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078947 8 + 4244037 TGAAAAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106801 8 + 4569836 TGAAAAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068218 8 - 159171411 TGAAAAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790234 8 + 3513951 TGAAAAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839133 8 + 1920343 TGAAAAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953935 8 - 7032639 TGAAAAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880805 8 - 65901067 TGAAAACC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967578 8 + 8555354 TGAAAACC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22775940 8 + 28711273 TGAACACC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380623 8 + 61074082 TTAAGAAC i canFam3.chr9 I 6 C 0 s dasNov3.JH570468 359809 8 - 852752 TTAGAAGC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22058532 13702 - 122082543 T a score=1809740.000000 s hg38.chr17_GL383564v2_alt 62211 110 + 133151 TTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC s panTro5.chr17 16248802 110 + 83181570 TTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCCAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156286 110 + 83442489 TTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCCAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991298 110 + 4267968 TTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971701 110 - 2193130 TTGTATCCTCTTTGAAGACATGTACAAAGCCATTTAGATCAACCACAGGAAGGATC---CTCAAGTCCTGACTTCTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043804 110 - 77216781 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956413 110 - 80997621 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012655 110 + 10377808 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899771 110 - 8458610 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855515 110 + 75148670 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTCTC-TAGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2078955 110 + 4244037 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106809 110 + 4569836 TTGTATCCTCTTTGAAGGCATCTACAGAGCCATTTAGATCAACCACAGGAAAGATC---TTCAAGTCCTGACTTTTC-TGGAGCTCAGCTGACATCAAGAGACCTCATGTTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068226 110 - 159171411 TTGTATCCTCTTTGAAGACATCTACGAAGCCATTTAGATCAAGCACAGGAAAGATC---CTCAAGTCCTGCCTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790242 110 + 3513951 CTGTATCCTCTTTGAAGACATCTGCAAAGCCATTTAGATCAAGCACAGGAAATATC---CTCAAGTCCTGCCTTTTC-TGGAGGTCAGCTGACATCAAGAAACCTCATCTTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839141 110 + 1920343 TTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAAGCACAGGAAAGATC---CTCAAGTCCTGCCTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6953943 110 - 7032639 TTGTATCCTCTTTGAAGACATCTACAAAGCCATTTAGATCAAGCACAGGAAAGATC---CTCAAGTCCTGCCTTTTC-TGGAGCTCAGCTGACATCAAGAAACCTCATCTTGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880813 110 - 65901067 TTATATCCTCTTTGAAGACATCAACAAAACCATTTAGATCAAGCACAGGAAAAGTC---CTCAGGTTCTGCCTTTGC-TGGGGCCCAGCTGACATCAAGAAACCACGTCATGCC i micMur3.chr16 C 0 I 42 s proCoq1.NW_012135969v1 2967586 109 + 8555354 TTGTATCCTCTTTGAAGACGTCAACAAAGCCATTTAGATCAAGCACAGGGAAA-TC---CTCAGGTTCTGCCTTTGC-TGGAGCCCAGCTGACATCAACAAACCGCGTCGTGCC i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22775948 109 + 28711273 TTGTATTCTCCCTGAAGACATCAACAAAGCCATTTAGGTGAAGCACAGGAAAAATC---CTCAGGTCCGGCCTTTGC-TAGAGCTCCGCTGACATCAAGACACCAC-TCATGCC i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22044830 114 - 122082543 CTGATTCCCTTTTGAAGATGTCGATGAAGTCATTTAGTTCAAATGCAGGAACGGTCAAACCCAGGCCCCTCCTTTGCAAGGATTTCCGTTGTCACTAAGAAACGTCATCGTGAC i mm10.chr11 T 13702 C 0 s canFam3.chr9 21380631 109 + 61074082 TTGCATCCTCTTTGAAGACGACAATGAAGCCATTCAGATCAAGCACAGGAAAGGTC---CTTGGGTATTGCCTTTGC-TGGAGCTCAGCTGTCAATTAGAAACCTAGACATGC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359817 103 - 852752 TTGAAACCTCTCTGAAGATGTTAATGAAGCCACTTAGATCAAGTGTAGGAGAGGCC---CCCAGATCCTGCCTTTGC-CAGAGCT-------CATTTAGAAACCTTGTCATGCC i dasNov3.JH570468 C 0 C 0 a score=445296.000000 s hg38.chr17_GL383564v2_alt 62321 39 + 133151 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCTGACC s panTro5.chr17 16248912 39 + 83181570 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCTGACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156396 39 + 83442489 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCTGACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991408 39 + 4267968 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCAACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971811 39 - 2193130 T-CTATGTTATTTCTAGAATGCTGAAAAGCTTACCCAACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043914 40 - 77216781 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956523 40 - 80997621 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012765 40 + 10377808 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899881 40 - 8458610 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855625 40 + 75148670 TACTATATTATTTCTAGAGTGCTGAAAAGCTTTCCCCACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079065 40 + 4244037 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106919 40 + 4569836 TACTATGTTATTTCTAGAATGCTGAAAAGCTTTCCCCACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068336 40 - 159171411 TACTGTGTTATTTCCAGAATGCTGAAAAGCTTTCCCAACC i calJac3.chr5 C 0 I 3 s saiBol1.JH378271 1790352 40 + 3513951 TACTGTGTTATTTCCAGAATGCTGAAAAGCTTTCCCAACC i saiBol1.JH378271 C 0 I 3 s cebCap1.NW_016107730v1 1839251 40 + 1920343 TACTCTGTTATTTCCAGAATGCTGAAAAGCTTTCCCAACC i cebCap1.NW_016107730v1 C 0 I 3 s aotNan1.NW_018502359v1 6954053 40 - 7032639 TACTGTGTTATTTCCAGAATGCTGAAAAGCTTTCTCAACC i aotNan1.NW_018502359v1 C 0 I 3 s proCoq1.NW_012135969v1 2967696 38 + 8555354 -ACTGTGATACTTCTAGA-CACTGAAATGCCTTCCTGGTC i proCoq1.NW_012135969v1 I 1 I 3 s otoGar3.GL873537 22776058 38 + 28711273 -ATGGTGGCATTCCTAGA-CTCTGAAATGCCTTTCAGGCT i otoGar3.GL873537 I 1 I 3 s mm10.chr11 22044944 37 - 122082543 --AACTGTGATTTTTAGA-TGAGGATGAGCTTTCCTGAAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21380740 37 + 61074082 --CAAATATATTTCTAGA-CATGGAAATTCTTTCCAGATT i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 359920 38 - 852752 -AAGTGGATGTTTCTAGG-CACTGAAATGTGTTCCAGACC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35880923 42 - 65901067 I a score=60271.000000 s hg38.chr17_GL383564v2_alt 62360 3 + 133151 CAA s panTro5.chr17 16248951 3 + 83181570 CAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156435 3 + 83442489 CAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991447 3 + 4267968 CAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971850 3 - 2193130 CAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043954 3 - 77216781 CAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956563 3 - 80997621 CAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012805 3 + 10377808 CAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899921 3 - 8458610 CAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855665 3 + 75148670 CAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079105 3 + 4244037 CAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106959 3 + 4569836 CAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068379 3 - 159171411 CAA i calJac3.chr5 I 3 C 0 s saiBol1.JH378271 1790395 3 + 3513951 CAA i saiBol1.JH378271 I 3 C 0 s cebCap1.NW_016107730v1 1839294 3 + 1920343 CAA i cebCap1.NW_016107730v1 I 3 C 0 s aotNan1.NW_018502359v1 6954096 3 - 7032639 CAA i aotNan1.NW_018502359v1 I 3 C 0 s micMur3.chr16 35880965 3 - 65901067 CAA i micMur3.chr16 I 42 C 0 s proCoq1.NW_012135969v1 2967737 3 + 8555354 CAA i proCoq1.NW_012135969v1 I 3 C 0 s otoGar3.GL873537 22776099 3 + 28711273 CAG i otoGar3.GL873537 I 3 C 0 s mm10.chr11 22044981 3 - 122082543 CAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21380780 3 + 61074082 CAA i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 359958 3 - 852752 CAA i dasNov3.JH570468 C 0 I 2 a score=311146.000000 s hg38.chr17_GL383564v2_alt 62363 17 + 133151 GCAAAGACACACATCAT s panTro5.chr17 16248954 17 + 83181570 GCAAAGACACACATCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156438 17 + 83442489 GCAAAGACACACATCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991450 17 + 4267968 GCAAAGACACACAACAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971853 17 - 2193130 GCAAAGACACATATCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043957 17 - 77216781 GCAAAGACACACATCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956566 17 - 80997621 GCAAAGACACACATCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012808 17 + 10377808 GCAAAGACACACATCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899924 17 - 8458610 GCAAAGACACACATCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855668 17 + 75148670 GCAAAGACACACATCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079108 17 + 4244037 GCAAAGACACACATCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106962 17 + 4569836 GCAAAGACACACATCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068382 17 - 159171411 GCAAAGACACACATCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1790398 17 + 3513951 GCAAAGACACACATCAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839297 17 + 1920343 GCAAAGACACACATCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954099 17 - 7032639 GCAAAGACACACATCAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880968 17 - 65901067 GCAAAGACACATATCAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967740 17 + 8555354 GCAAAGACACATATCAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776102 17 + 28711273 GCAAAGACACATATCAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21380783 17 + 61074082 GAAAAGACACACATCAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359963 17 - 852752 AGAAAGACACACATTAT i dasNov3.JH570468 I 2 C 0 e mm10.chr11 22044984 0 - 122082543 C a score=6719377.000000 s hg38.chr17_GL383564v2_alt 62380 414 + 133151 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTGTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC--TTAAGGTGTTTCCTGAACGTACTA-CTGCATTTCCTGTTTTCCTTTTTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG s panTro5.chr17 16248971 414 + 83181570 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC--TTAGGGTGTTTCCTGAACATACTA-CTGCATTTCCTGTTTTCCTTTTTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGAGTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156455 414 + 83442489 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC--TTAGGGTGTTTCCTGAACATACTA-CTGCATTTCCTGTTTTCCTTTTTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991467 415 + 4267968 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACGTACTA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCGTAGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1971870 415 - 2193130 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCTTCTTTGTTTCTAAAGATGCTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACGTACTA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAGGGAGGAGACTTCATTTACTTCCCAATAAACTTCATTTCTCTGGCATAATAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCGTAAAAATACCC--CTTCATTAGGAGAATAAAATGAAGTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACGTCCTT----CTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-cctgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30043974 412 - 77216781 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAGATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATTCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956583 412 - 80997621 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACT---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAGATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATTCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2012825 412 + 10377808 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAGATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATTCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1899941 412 - 8458610 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGGCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64855685 412 + 75148670 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGACTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079125 412 + 4244037 CAACTTCCAATGTCTGGACAACTCCTTCCTGTTGAGGGTCGAGCCTCTTTGTTTCTAAAGACGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAACG---TA-CTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCCTT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2106979 412 + 4569836 CAACTTCCAATGTCTGGATGACTCCTTCCTATTGAGGGTCGAGCCTCTTTGTTTCTAAAGATGTTCAACTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCTGAATG---TA-CTGCATTTCCTGCTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGAAGACTTCATTTACTTCCCAATAAACTTCATTTCTGTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAGAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGACATCATT----TTGGGAGACTCCCACCCAGGGT-AGGCCATGCAGG-----AAA-CCTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46068399 415 - 159171411 CAGCTTCCAATGTCTGGACAACTCCTTCCTGTTGAAGGTCGAGACTCTTTGTTTCTAAAGATCTGCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCTAGAACG---TA-TTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATACAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCGTATTCATACATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGCCAAGCCTTTATGCTTTCACCAGAAACACTGATGTAGACAGGGAATGATGTCCTT----CTGGGAGACTCCCACCAAGGGCAAGGCCATGCAAG-----GAAACCTGG i calJac3.chr5 C 0 I 724 s saiBol1.JH378271 1790415 407 + 3513951 CAGCTTCCAATGTCTGGACAACTCCTTCCTGTTGAAGGTCGAGACTCTTTGTTTCTAAAGATCTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCAGAACG---TG-TTGCATTTCCTGTTTTCCTTTATTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGGCAAGCCTTTATGC-TTCACCAGAAACACTGATATAGACAGGGAAGGATGTC-------CTGGGAGACTCCCATCAAGGGC-AGGCCATGCAGG-----AAA---CGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839314 411 + 1920343 CAGCTTCCAATGTCTGGACAACTTCTTCCTGTTGAAAGTCGAGACTCTTTGTTTCTAAGGATGTTCGGCTCCCTGTAATCTGAGCTCC----AGTTACTA--TTTAGGGTGTTTCCAGAACG---TG-TTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCACTGTAAATTACTCATCATGGCTGTTTCATAAAAATACCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGATGTCCTT----CTGGGAGACTCCCACCAAGGGC-AGGCCATGCAGG-----AAA-CCTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954116 412 - 7032639 CAGCTTCCAATGTCTGGACAGCTCCTTCCTGTTGAAGGTCGAGACTCTTTGTTTCTAAAGATCTTCAGCTCCCTGTAATCTGAGCTCC----AGTTACTAC-TTTAGGGTGTTTCCAGAATG---TA-TTGCATTTCCTGTTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGAGACTTCAATTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGT--TTCTCATTCATATTCATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATATCC--CTTCATTAGGAGAATAAAATGAATTAAATGACTGAGCCAAGCCTTTATGC-TTCACCAGAAACACTGATGTAGACAGGGAAGGATGTCCTT----CTGGGAGACTCCCACCAAGGGC-AGGCCATGCAGG-----AAA-CCTGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35880985 413 - 65901067 CAACTTCCAATGTCTGGAACATGCCTTCGGGTTGAGAGTTGAGCCTCTTTG----TGAAAATGTTCAGCTCGCTGTCATCTGAGCTCC----AGTTATTAG-TTTAGGGTGTTTCCTGTACC---TA-CTGCATTTCCTGCTTTCCTTTCTTCTTTGGCATTCTCTGGAATGCAAGGAGGTTACTTCATTTACTTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGTGCTTCTCATCCATATTCATGCATTGTAAATTACTCATGATGGCTGTTTCAAAAAAATACCC--CTTCATTAGGAGGATAAAATGGATTGAATGACTGTGCTCAGCCATTAGGC-ACCACCAGAAACACTGATGAAG--AGGGAGCGATGCCCTC----TTGAGAGGCTCCCACCAAGGGT-GGGCCACTCAGAAAACCAAA-CCTGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2967757 398 + 8555354 CAACTTCCAATGTCTGGAAAATTCCTTCGGGTTGAGAGTTGAGCCTCTTTGTTTCTGAAAATGTTCAGCTCTCTGTTGTCTGAGCTCC----AGTTATTAG-TTTAGAGTGTTTCCTGTACC---TG-CTGCATTTCCTGCTTTCCTTTCTTCTTTGGTATTCTCTGGAATGCAAGGAGGTTACTTCATTTACCTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGTGCTTCTCATCCATATTCATGCATTGTAAATTACTCATGATGGCTGTTTCATAAAAATGCCC--CTTCATTAGGAGGATAAAATGGATTGAATGACTGTGCTCAGCCATTAGGC-ACCACCAGAAACACTGACGAAG--AGGGCG------------------GATGCTCCCACCAAGGGC-GGGCCATGCAGA-----AAA-CCTGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776119 405 + 28711273 CAACTTCCAGTGTCTGGAAAA---CTTTGCATTAAGGGTTGAGCTTTTTTT---CTGAGGATGTTCAGCTCCTTGTAATCTAAGCTCT----GGTTATTGG-TTTAGGATGTTTCCTTAACA---TA-TTGTATCTCCTGTTTTCCTTTCTTCTTTGGTATTCTCTGGAGTGCAAGGAAGTTACTTCATTTA-TTCCCAATAAACTTTATTTCTCTGGCATAGTAAA--TGTGCTTCTCATCCATACTTATGCATTGTAAATTACTCATCATGGCTGTTTCATAAAAATAGTC--TTTCATTAGGAGGATAAAATGGATTGAATGATGGTGCTCAACTATTATGC-ACCACCAGGAACACTGATGAGG--AAGGAGGGATGCCCTC----TCATGAGGCTCCCCCCAAGGGT-GGGCCATGCACA-----ACA-CCCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22044984 409 - 122082543 CAACTTCC--TGTC----CAACTCCTTCA-GTTGAAGGTTGAGTGTCTTTTCTGCTCAGG--TGTCACATGTCTGCCAACGGAACTCCGTGAGATTGGCA--TAGAGGGCGGTTCCTGTACA---TGCCTCCATTTCCTGCCTTCCTTTCTTCTTGGTGATTCTCTGGAATGCAAGGAGGCAGCTTCATCCACCTCCCAATAAACTTTATTTCTCTGGCATAGTAAAGGTGT--TTCTCATTCATATTCATACTTTGTAAAATATTCA---TGACTGTCCCATAAAAATACCTGGAACTAGCAGGGTGATTAAATGGATCAAATGGCTGA-CCTAGCTATTAAGC-TCAAAGGGAAACCTTGAGG--GGCAGGGAGAGGTGTTCTCTGTATGGGTGGACTCTCAGAAAGGGC-GGGCCATGTAGA-----AAA-ACTTG i mm10.chr11 C 0 I 1 s canFam3.chr9 21380800 408 + 61074082 CAACTTCTAATGTCTGGAAAATCCCTTCCTGTTGAAGTGTGAGTGTCTTTGTTTCTAAAGATGTTCAGCTCCCTGTAATCCAAGCTCC----AGGGTCTACTTTTAGGGCATTTCCTGTATG---TA-TTGTGTTTTCTGCTTTTCTAGCTTCTTTGGTATTCTCTGGAATACAAGGAAGCTACTTCATATACTTCCCAATAAACTTTATTTCTCTGGCATAGCAAATTTGT--TTCTCATTTATATTTATGCACTGTAAAGTATCTACCGTGGCTGTTTCCTAAAAATACCC--CTTTGTTAGGAGGA---AATGGGTTAAATGATTGACACCAGCCATTATGT-TCCAGGA-AAATACTGATGGGG--AAGGGAGCCTGTCATC----CTAGGAGGCTCCTACCAAGGGG-AGACCATGCAG------AAA-CCTGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 359980 375 - 852752 TAATTTTGAA-------------CTTTCGTGCTGAGGGTTGAGCTTCTTTATTTCTGGAGATGTTCAATTCCCTAGAATCTGAGCTCC----AGGT--TAC-TTTAAGGCATTTCCTATGTG---TA-TTGTATTTCCTGCTTTCCTTGCTTCTTTGGTATTCTCTGGAATGTGAGGAAGCTCCTTCATTTACTTCCCAATAAACTTTATTTCCCTGGCATAGTAAA--TGTGTTTCTCATTCATATTCATGCCTTGTAAAACACTCATCATGGATGTTTCAT-GAAATAACC--CTTCATTAGGAGGATGAAGTGGGTTAAACAACCGGCCCAAGCCATTGTGC-TCCAT--------------------AGGTGGGATGCCCTC----CTGTGACGCTCCTGCCAAG----AGACCGCACAGA-----AAA-CCTGA i dasNov3.JH570468 C 0 C 0 a score=731187.000000 s hg38.chr17_GL383564v2_alt 62794 48 + 133151 CCTTCAATACCCATG-----CTTACCTTGCCTTGACT----ACAGGGCCCTTGGCAA s panTro5.chr17 16249385 48 + 83181570 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156869 48 + 83442489 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991882 48 + 4267968 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972285 48 - 2193130 ccttgaatacccatg-----cttgccttgccttgact----GCAGGGCCCTTGGCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044386 48 - 77216781 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27956995 48 - 80997621 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013237 48 + 10377808 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900353 48 - 8458610 CCTTCAATACCCATG-----CTTGTCTTGCCTTGACT----ACAGGGCCCTTGGCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856097 48 + 75148670 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079537 48 + 4244037 CCTTCAATACCCATG-----CTTGTCTTGCCTTGACT----ACAGGGCCCTTGGCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107391 48 + 4569836 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACT----ACAGGGCCCTTGGCAA i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1790822 52 + 3513951 CCTTCAATACCCATG-----CTTGCCTTGCCTTGACTGCAGACAGGGCTCTTGGCAA i saiBol1.JH378271 C 0 I 1090 s cebCap1.NW_016107730v1 1839725 48 + 1920343 CCTTCAATACCCATG-----CTTGCCTTACCTTGACT----ACAGGGCTCTTGGCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954528 53 - 7032639 CCTTCAATACCCATGCTTGCCTTGCCTTGCCTTGACT----ACAGGGCTCTTGGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35881398 48 - 65901067 CCTTCATCAGCCATG-----CCCATCTTGCCTTGACT----GCAGGACCTTTGGCAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968155 47 + 8555354 CCCTCA-AACCCATG-----CTCATCTTGCCTTGAAT----GCAGGGCTTTTGGCAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776524 48 + 28711273 TCTTCAGCACCCACA-----ACCTTCTTGCCTTGCCT----ACAGGGCACTTGGCAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045394 48 - 122082543 CCATGAACACCCAAG-----CCCATTTTGCTGTGACT----GCAGGGCCCTTGACTA i mm10.chr11 I 1 C 0 s canFam3.chr9 21381208 48 + 61074082 CCTCCAACACTCATG-----CCCATCTTGCCTTGGCT----GCAATGTCCTTGGCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 360355 48 - 852752 ACTTCAGCTCCCCTG-----CCCATCTTGCCATGGCT----GCAGGGTCCTTGGCAA i dasNov3.JH570468 C 0 C 0 e calJac3.chr5 46068814 724 - 159171411 I a score=43599.000000 s hg38.chr17_GL383564v2_alt 62842 3 + 133151 TTT- s panTro5.chr17 16249433 3 + 83181570 TTT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156917 3 + 83442489 TTT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991930 3 + 4267968 TTT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972333 3 - 2193130 TTT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044434 3 - 77216781 TTT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957043 3 - 80997621 TTT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013285 3 + 10377808 TTT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900401 3 - 8458610 TTT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856145 3 + 75148670 TTT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079585 3 + 4244037 TTT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107439 3 + 4569836 TTT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069538 3 - 159171411 ttt- i calJac3.chr5 I 724 C 0 s saiBol1.JH378271 1791964 3 + 3513951 ttt- i saiBol1.JH378271 I 1090 C 0 s cebCap1.NW_016107730v1 1839773 3 + 1920343 TTT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6954581 3 - 7032639 ttt- i aotNan1.NW_018502359v1 C 0 I 1098 s micMur3.chr16 35881446 3 - 65901067 TTT- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968202 3 + 8555354 TTT- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776572 3 + 28711273 TTT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045442 3 - 122082543 TTC- i mm10.chr11 C 0 C 0 s canFam3.chr9 21381256 1 + 61074082 --T- i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 360403 3 - 852752 -TTA i dasNov3.JH570468 C 0 C 0 a score=16670.000000 s hg38.chr17_GL383564v2_alt 62845 1 + 133151 T s panTro5.chr17 16249436 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156920 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991933 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972336 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044437 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957046 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013288 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900404 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856148 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079588 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107442 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069541 1 - 159171411 t i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1791967 1 + 3513951 t i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1839776 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 I 1093 s micMur3.chr16 35881449 1 - 65901067 T i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968205 1 + 8555354 T i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776575 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045445 1 - 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 21381259 1 + 61074082 T i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 360406 1 - 852752 C i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6954584 1098 - 7032639 I a score=38067.000000 s hg38.chr17_GL383564v2_alt 62846 6 + 133151 GCAAAG- s panTro5.chr17 16249437 6 + 83181570 GCAAAG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156921 6 + 83442489 GCAAAG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991934 6 + 4267968 GCAAAG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972337 6 - 2193130 GCAAAG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044438 6 - 77216781 GCAAAT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957047 6 - 80997621 GCAAAT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013289 6 + 10377808 GCAAAT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900405 6 - 8458610 GCAAAT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856149 6 + 75148670 GCAAAT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079589 6 + 4244037 GCAAAT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107443 6 + 4569836 GCAAAT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069542 6 - 159171411 GAGAAT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1791968 6 + 3513951 GAGAAT- i saiBol1.JH378271 C 0 C 0 s micMur3.chr16 35881450 6 - 65901067 GAGAAT- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968206 6 + 8555354 GAGAAT- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776576 6 + 28711273 GAGAAT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045446 3 - 122082543 ---AAG- i mm10.chr11 C 0 I 1 s canFam3.chr9 21381260 4 + 61074082 --AAGT- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 360407 6 - 852752 -AAGATT i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6954584 1098 - 7032639 I e cebCap1.NW_016107730v1 1839777 1093 + 1920343 I a score=1306559.000000 s hg38.chr17_GL383564v2_alt 62852 83 + 133151 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTCTCCTAAACTGCCTGA s panTro5.chr17 16249443 83 + 83181570 CCTCCCCAGACTTCACTGT-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTCTCCTAAACTGCCTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16156927 83 + 83442489 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTCTCCTAAACTGCCTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3991940 83 + 4267968 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGCTCTGCTTCCCTTTCTCCTAAACTGCCTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972343 83 - 2193130 CCTCCCCAGACTTCACTGC-TATCTCCAGCTCTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTTTCCTAAACTGCCTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044444 83 - 77216781 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957053 83 - 80997621 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013295 83 + 10377808 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900411 83 - 8458610 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAACTGCCTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856155 83 + 75148670 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAATTGCCTGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079595 83 + 4244037 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTCTCTTTCTCCTAAACTGCCTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107449 83 + 4569836 CCTCCCCAAACTTCACTGC-TATCTCTGGCTCTCACCCTCATCAGAACAG---AATGTTCTGCTTTCCTTTCTCCTAAACTGCCTGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069548 83 - 159171411 CCTCCCCAGAGTTCACTGC-TATCTCTGGCTTTCACCCTCATCAGAATAG---AATGTTCTGCTTTCCTTTTTCCTAAACTGCCCGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1791974 83 + 3513951 CCGCCCCACAGTTCACTGC-TATCTCTGGCTTTCACCCTCATCAGAAGAG---AATGTTCTGCTTCCCTTTTTCCTAAACTGCCTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1840870 83 + 1920343 CCTCCCCAGAGTTCACTGC-TATCTCTGGCTTTCACCCTCATCAGAATAG---AATGTTCTGTTTCCCTTTTTTCTAAACTGCCTGA i cebCap1.NW_016107730v1 I 1093 C 0 s aotNan1.NW_018502359v1 6955682 83 - 7032639 CCTCCCCAGAGTTCACTGC-TATCTCTGACTTTCACCCTCATCAGAATAG---AATGTTCTGCTTCCCTTTTTCCTAAACTGCCTGA i aotNan1.NW_018502359v1 I 1098 C 0 s micMur3.chr16 35881456 83 - 65901067 CTTCCCCAAACCTCACTGC-TATCTCCCATGGTCACCCTCATCAGAATGG---AATTTTCTGCTCCCCTTTCTCCTTAACTGCCTGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968212 83 + 8555354 CCTCCCCTAACCTCACTCC-TATCTCCCATGATCACCCTCATCAGAATGG---AATTTTCTGCTTCCCTTTCTCCTAAACTGCCTGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776582 83 + 28711273 CCTCCCCAAACCCCACTGT-TATCTCCCACTATCACCCTCATCGGAATGG---AATTTTCTGCTTCTCCTTCTCCTAAACGGCCTGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22045450 66 - 122082543 CTCCCCCA---TTCCCTGAGTTTCTCAAATTCTCACCCTCATTAG------------------TCTTCTTGCTCTTAAACTACATGA i mm10.chr11 I 1 I 1654 s canFam3.chr9 21381265 86 + 61074082 TCACCTCAAACCTCACTGC-TGCCTCTCATGTTGACCCTCATCACCAGGGGTTGATTCTCTGCTTCCCTTTCTCCCAAACTGCCTAA i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 360413 82 - 852752 CTTCCCTAAACCTCCCTGC-TATTTCCCATTGTCAATC-CTTCTTACTGG---AATTCTCTTCTCCTTTTTCTCCCAAACTACCTAA i dasNov3.JH570468 C 0 C 0 a score=2067879.000000 s hg38.chr17_GL383564v2_alt 62935 153 + 133151 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTGCTGCCTTGCTGAT------------ATAGATACCTACTCCTCCCTTAAAATACACCTTCATTGATTTCCATAACCCTGCACACTCTGGGT s panTro5.chr17 16249526 153 + 83181570 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGTTTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTGAT------------ATAGATACCTACTCCTCCCTTAAAATACATCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157010 153 + 83442489 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGTTTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTGAT------------GTAGATACCTACTCCTCCCTTAAAATACATCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992023 153 + 4267968 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTGAT------------ATAGATACCTACTCCTCCCTTAAAATACACCTTCAATGATTTCCATAACCCTGCACACTCTGGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972426 153 - 2193130 AGAAACTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTGTCTGCTGCTCCTGCCTTGCTATT------------ATATATACCTACTCCTCCCTTAAAATACACCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044527 153 - 77216781 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAACGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957136 153 - 80997621 AGAACCTACAGAAACTA--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAGCCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013378 153 + 10377808 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATtctctcctc--tcagcctctctgctactcctgccttgctAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900494 153 - 8458610 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856238 153 + 75148670 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTAAT------------ATAGATACCTGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACCCTGGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079678 153 + 4244037 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGACCAGTGATTCTCTCCTC--TCAACCTCTCTGCTACTCCTGCCTTGCTAAT------------ATAGATACCGGCTCCTCCCTTGAAATGCACCTTCATTGATTTCCACAACCCTGCACACTCTGGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107532 153 + 4569836 AGAACCTACAGAAACTG--------------CTTCTACAGAAACTGTTC--AAAGAGCAGTGATTCTCTCCTC--TCAACCTCTCTGCTGCTCCTGCCTTGCTAAT------------ATAGATACCTGCTCCTCCCTCGAAATGCACCTTCATTGATTTCCATAACCCTGCACACTCTGGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069631 138 - 159171411 AGAAATAACAGAAA-----------------------------CTGTTC--AAAGAGCAGTGAGTCTCTCCTC--TCAATCTCTCTGCTGCTCCTGCCTTGGTAAC------------ATAGATACCTCCTCCTCCCTCGAAAGGCACCTTCATTGATTTCCATAACCCTGCACACTCTGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792057 152 + 3513951 AGAAACAACAGAAACTG--------------CCTCTACAGAAGCTGCTC--AAAGAGCAGTGAGTCTCTCCTC--TCAGTCCCTCTGCTGTTCCTGCCTTGCTAAT------------ATAGATACTTGCTCCTCCCTCGAAATGCATCTTCA-TGATTTCCATAATCCTGCAAACTCTGGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1840953 153 + 1920343 AGAAACAACAGAAACTG--------------CTTCTACAGAAACTGCTC--AAAGAGCAGGGAGTCTCTCCTC--TCAATCTCTCTGCTCCTCCTGCCTTGCTAAT------------ATAGATACCTGCTcctccttcgaaatgcaccttcattgatttccataaccctgcacactctgggc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6955765 153 - 7032639 AGAAACAACAGAAACTG--------------CTTCTACAGAAACTGCTC--CAAGAGCAGTGAGTCTCTCCTC--TCAATCTCTCTGCTGCCCCTGCCTTGCTAAT------------ATAGATACCTGCTCCGCCCTCGAAATGCACCTTCACTGATTTCCATAATCCTGCACACTCTGGGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35881539 141 - 65901067 AG----------ACCAG--------------GTTCTGTAGAAAATGCTC--CAAGAGCAGCGAACCTCTTCTC--TCAACCTCTCTGTTGCACCTGCATTG--------------ACAATAGATACCTGCTCCTCCCTCGACATGCACCTCCATCAATTTCCATAACCCTGCACACTCTAGCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968295 136 + 8555354 AG----------ACCAG--------------GTTCTGTAGAAACTGCTC--AAAGAGCAGCGAACCTCTCCTC--TCAGCCTTTCTGGTGCACCTGCAT-------------------ATAGATACCTACTCCTCCCTTGAAATGCGCCTTTGTTGATTTCCATAACCCCGCACACTCCAGGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776665 153 + 28711273 AG----------ACCTA--------------CTTCTGTAGAAACTACTC--AATGGGCAGTGAGCCACTTCTC--TCAACCTTT-TGCGGCACCTGCATTGCTGACATATTGGCAATAATAGATACCTGCTCCTTTCACAAACTGTACCTTTGTTGATTTCCATAA-ACTGTACACTCTAGGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21381351 147 + 61074082 -----------AGACTGA-------------CTTCTGTAGAAACTACTCCTAAAGAGCAGCTGCCCTCTCCCCTTTCAACTTGTCTTCTATATCTGAATGACCAGT------------ATAGAAGCCTGGCTTTCCCTCAAAATGTACCTTCAATGATTTACATAAATCCACACATTCTGGGT i canFam3.chr9 C 0 I 6382 s dasNov3.JH570468 360495 153 - 852752 -----------AGACTGGCTGTGTTTCTACTTCTCTGTAGAAACTGCTC--AGAGAGCAGCAA---TCTCCAT--TCAACCTCTCTGCTGCACCTGCTTTGCCAAA------------ATAGCTACTTTTTCCTCCCTCAAAACCCACCTTCATTGATTTCCAAAACCTCACATACACTGGGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22045516 1654 - 122082543 I a score=5294622.000000 s hg38.chr17_GL383564v2_alt 63088 384 + 133151 -CTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTTAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCGTGTAGATCTAGCTCCTCTATGCTGATGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATGCCTGACATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA s panTro5.chr17 16249679 384 + 83181570 -CTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCATGTAGATCTAGCTCCTCTATGCTGCTGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCTGCCCACTTGTTATGCCTGGCATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157163 384 + 83442489 -CTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCATGTAGATCTAGCTCCTCTATGCTGCTGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCTGCCCACTTGTTATGCCTGACATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992176 384 + 4267968 -CTTCTTGTAATATCCCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCTTTCTACGTCCCTGTTCATGTAGATCTAGCTCCTCTATGCTGATGACTGCCACATCTCCCTCTCATCTCAGCTCAGTTTCCAGGTTTTCTGTTGCGCATATGACAGCTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATGCCTGACATGTTGTCCTCCAGATAGACCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972579 382 - 2193130 -CTTCTTGTAATATCTCTAA-TTACCTCTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTTCTCCTTCTACGTCCCTGTTCATGTAGAACTAGCTCCTCTATGCTGATGACTCCCACATCTCCCTCTCATCTCAGCTCAGTTTCTAGGTTTTCTGTTGCGCATACGACAGTTTCACTTGGTATCAGGTCATTACATCATG-TTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTCGCCGCCCACTTGTTATGCCTGACATGTTGTCCTCCAAATAGACCCTTTAAATGCAG-----------TCCTTACC-TTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30044680 384 - 77216781 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957289 384 - 80997621 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCCCCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTGTCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013531 384 + 10377808 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1900647 384 - 8458610 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAAAGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTACGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCTTTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856391 385 + 75148670 -CTTCTTGAAATATCGCTAATTTACCTGTTCTCTGTTGTCTTGTTAG-CTATCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTATGTCCCTGTTCATGTAGAACTAGCCCGTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2079831 384 + 4244037 -CTTCTTGAAATATCGCTAA-TTACCTGTTCTCTGTTGCCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAAAGAAAAAAACACCTATATTCTCAGCCCTCCGTCTTGCTCTTTCTACGTCCCTGTTCATGTAGAACTAGCCCCTCTATGCTGATGACTCCCACATCTCTCTCTCTTCTCAGCTTGGTTTCCAGGTTTTCTGTTGCACATACAACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCAG-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTCTTT--CCCCT---AGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2107685 384 + 4569836 -CTTCTTGAAATATCGCTAA-TTACCTCTACTCTGTTGTCTTGTTAG-CTGTCTTCCCCTTTTTGT-CCCAAATGAAGGAAACACCTATATTCTCAGCCCTCTGTCTTGTTCTTTCTACGTCCCTGTTCATGTAGAACTAGCCCTTCTATGCTGATGACTCCCACATCTCCCTCTCATCTCAGCTTGGTTTCCAGGTTTTCTGTTGCGCATACGACAGTTTCATTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAATGTATT-TTTCCCAAACTGGTTCATCTTGCCGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGGCCCTTTAAATGCCA-----------TCCTTACCTTTCCCCTCTTCAAGTTTATTATTT--CCCCT---AGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46069769 379 - 159171411 -TTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCTTGTTAG-CTTTCTTCCCTTTTT-GT-CCCAAATGAAGGAAACACGTACATCCTCAGCCCTCTGTCTTTCTCCTTCTACGTCCCTGTTCATGTAGAACTAGCTCCTCTATGCTGATGACTCCCGCATCTCCC-----TCTCAGCTCGATTTCCAGGTTTTCTGTTGTGAATGGGACAGTTTCACTTGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAATGTATTGTTTTCCAACCTGGTTCATCTCACTGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGACCCTTTAAATTCAG-----------TCCTTACCTTTCCGCTCTTCGAGTTTCTTCTTT--CCCCT---AGG i calJac3.chr5 C 0 I 2118 s saiBol1.JH378271 1792209 385 + 3513951 -TTTCTTGTAATATCTCTAA-TTACCTGTTCTCTGTTGTCATCTTAG-CTTTCTTCCCCTTTTAGT-CCCAGATGAAAGAAACACTTACATCCTCAGCCCTCTGTCTTTCTCCTTCTATGTCCCTGTTCATGTAGAACTAGCTCCTCTATGCTGATGGCTCCCACATCTCCCTCTCATCTCAGCTCGATTTCTGGGTTTTCTGTTGCGCATGGGACAGTTTCACTTGGTATCAGGTCATTATATCATGTTTAATTGGACTAAACCTTATTGTTTTCCAAACTGGTTCATCTCACTGCCCACTTGTTATACCTGACATGTTGTCCTCCAAATAGACCCTTTAAATTCAG-----------TCCTTACCTTTCCCCTTTTCGAGTTTATTCTTT--CCCCT---AGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841106 385 + 1920343 -tttcttgtactatctctaa-ttacctgttctctgttgtcttgttag-ctttcttcccctttttgt-cccagatgaaggaaacacttacatcctcggccctctgtctttctccttctacatccctgttcatgtagaactagctcctctatgctgatggctcccacatctccctctcaccttagctcgatttccaggttttctgttgcgcatgggacagtttcacttggtatcaggtcattacatcatgtttaattggactaaaatgtattgttttccaaactggttcatctcacTGCCCACTTGTTATACCTGACATGTTGTCCTCCACATAGACCCTTTAAATTCAG-----------TCCTTACCTTTCCTCTCTTCTAGTTTATTCTTT--CCCCT---AGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6955918 385 - 7032639 -TTTCTTGTAATATCTGTAA-TTACCTGTTTTCTGTTGTCTTGTTAG-CTCTCTTCCCCATTTTGTCCCCAAATGAAGGAAACACTTACATCCTCAGCCCTCTGTCTTTCTCCTTCTACGTCCCTGTTCATGTAGAACTAGCTCCTCTGTGCTGATGACTCCCACGTCTCCCTCTCATCTCAGCTTGATTTCCAGGTTTTCTGTCGCGCATGGGACAGTTTCACTCGGTATCAGGTCATTACATCATGTTTAATTGGACTAAAACGTATTGTTTTCCAAACTGGTTCATCTCACTGCCCA-TTGTTATACCTGACATGTTGTCCTCCAAATAGACCCTTTAAATTCAG-----------TCCTTACCTTTTCCCTCTTCGAGTTTATTCTTT--CCCCC---AGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35881680 353 - 65901067 -CCTTTGGTAACAGCTCAGA-TTATCTG-----------------------TCTTCCCTTTTGTGT-CCCAAATGGAGGAAACACCCAGATCCCCAGCCCTCTGTTTTTCTCCTTCTATATCCCTGTTTATGGAGAACCAGCACCTCTACCCTGATGA-------------CTCTCATCTCAGCTTACGCTCCAGGTTTTCAGTTGCCCATAAGACAATTTCACTGGGCACCAGACCTTTACATCATGTTTAATTGGACTAAAACTTATC-TTTGACAAACTGGTTCATCTTGCTACCCACTTGTTATACCTGAAA---TGTCCTCCAAAAGGACCCTTTAAGTGCAGTCAACCCTCTCTCCTTACCTTT-CTCTCTTAAAGTTTCTTCTTT--CCCCT------ i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968431 366 + 8555354 -CCTTTTGGAACAGCTCAGA-TTACCTG-----------------------TCTTCCCTTTTTTGT-CCCAAATGGAGGAGACATCTAGATCCCGAGCCCTCTGTTTTTCTCCTTCTATATCCCTGTTCATGGAGAACTGGCACCTCTACCCTGATGGCTCTCACATCTCCCTCTCACCTCAGCTTAAGTTCCAGGTTTTCAGTTGCCCATAAGACAGTTTCACTGGGCACCAGACCATTACATCACGTTTAATTGGACTAAAGCTTATC-TTTGACAAACTGGTTCATCTTGCTACCCATTTGTTATATCTGACG---TGTCCTCCAAAAGGACCCTTTAAGTGCAATCAACCCTCTCTCCTTACCTTT-CCCTCTGCAAGTTTCTTCTTT--CCCCT------ i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22776818 354 + 28711273 -CCTTTTCTAATAGCTCTGA-TTATCTG-----------------------TCTTCCTTTTTTGGT-CCCAACTGAAAGAAACACCTAGATCCTAAGCCCTCTGTTTTTCTCCC------TCCCTATTCACAGAGAACTAACCCCTCTACTACAATGGCTCCCACATCCTGCTCTCACCTTGGCTCAAGTTTCAGGTTCTTATTTGCCCATAA------------GGGCATCAGGCCATTATATCATGTTTAACCAATCTAAAACTTACC-TTTGACAAGCTGGTTCATATTGCTACCCACTTGCTACTCCTGATGTGTTGTCCTCCAATAAGACCCTTCAAGGGCAGTCCACCCTCTCTCTTTACCTTT-CTCTCTTCAAGTTCATTCTTC--CCCTTAGG--- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21387880 372 + 61074082 -CTTTTT----TATCTCCTA-TTACAGGTTCCCCAGCTCCCAATTAACCTGACTTCCCCTTTCTGT-CCCAACTGGGGGATAGGCCTAGATCCTCTGCC----ATGTTTATTTTTCTCCATCCCTGTTCAGGGAGGACTAGCTCCTCTATGCTGACCACCCCTGAAG----TTCTCATTTTAGCTCAAGTCCTGGGTCTTCAGTTGCACATAAGACAGTTTGACTTGGTATTAGGTTGCCACATTACATTTAATTGGACTCCAACTTATC-TTTGTCA---------TTCTTGTTACCCGCTTGTTATCCCCAACACTTTGTAATCCAAA--GACCCTTTAAATGAAGGCAAGCACCTCTCCCCACC-TTCCTCTTTTCAAGTTCGCTCTTT--CCTTT---AGG i canFam3.chr9 I 6382 C 0 s dasNov3.JH570468 360648 371 - 852752 CTTTTTTGTTACATCTCTGA-CTACCTGTTTTCTGTCTTCTGAGAAGTCTGTCTTCCCCTTTCTGT-CCCCAGCAGAGTAAATACCTAGATCCTCAGTTT--------------------TACTTATTCATGGAGaactaacatctctatgctgatgatgcccaagttgtgatcttataccagctcaagttccaggtttttggttgtccataggacagtatcatttggtattaggccatcacatcacatttaattgggctaaaacttaac-tTTGCCAAACTGGTTCATCTTGTTACCCACTTGTTAATACTG------TGTCTTCTAAAAAGACTCTT-AAGTGCAGGCTGGTCACTCTGCTCA-CTCCCACCTCTTCAAGTTTATTCTTTTCCTCCT---AGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22045516 1654 - 122082543 I a score=502170.000000 s hg38.chr17_GL383564v2_alt 63472 33 + 133151 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC s panTro5.chr17 16250063 33 + 83181570 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157547 33 + 83442489 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992560 33 + 4267968 TCTTTGGTCTTATCCATAATGTTCTTCCATAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972961 33 - 2193130 TCTTTGCTCTTATCCGTAATGTTCTTCCATAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045064 33 - 77216781 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957673 33 - 80997621 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013915 33 + 10377808 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901031 33 - 8458610 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856776 33 + 75148670 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080215 33 + 4244037 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108069 33 + 4569836 TCTTTGCTCTTATCCATAATGTTCTTCCATAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072266 33 - 159171411 TCTTTGCTCTTATCCATAATGTTCTCCCACAGC i calJac3.chr5 I 2118 C 0 s saiBol1.JH378271 1792594 33 + 3513951 TCTTTGCTCTTATCCGTAATGTTCTACCACAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841491 33 + 1920343 TCTTTGCTCTTGTCCATAATGTTCTCCCACAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956303 33 - 7032639 TGTTTGCTCTTCTCCGTAATGTTCTCCCACAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882033 33 - 65901067 TCTTTGCCCTTATCTACAATGTTCTTCCATAGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2968797 33 + 8555354 TCTTTGCCCTTATCTACAATGTTCGTCCATAGT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777172 33 + 28711273 TCTTTACCCTTATTTACAATGTTATCCCATGGC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21388252 33 + 61074082 TCTTTGCTCCTATTTATAATGTTCTTCTATAAC i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 361019 24 - 852752 TCTTTGTACT---------TGGTCTTCTGTATC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22045516 1654 - 122082543 I a score=1059363.000000 s hg38.chr17_GL383564v2_alt 63505 66 + 133151 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA s panTro5.chr17 16250096 66 + 83181570 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157580 66 + 83442489 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992593 66 + 4267968 CTCTTTATCATTTCATTTTCTATAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1972994 66 - 2193130 CTCTTTATCATTTCATTTTATATAATTTCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045097 66 - 77216781 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGTATCTC-CCC-CAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957706 66 - 80997621 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2013948 66 + 10377808 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901064 66 - 8458610 CTCTTTATCATTCCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856809 66 + 75148670 CTCCTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080248 66 + 4244037 CTCTTTATCATTCCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAACATCTC-CCC-CAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108102 66 + 4569836 CTCTTTATCATTTCATTTTCTATAATTCCAAAAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072299 68 - 159171411 CTCTTTATAATTTCATTTTCTGTAATTCCAAGAAAGGGCCAATGTTCATTAAGTATCTC-CCCTCAAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792627 62 + 3513951 CTCTT----ATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTC-CCC-CAAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841524 66 + 1920343 CTCTTTATCATTTCATTTTCTGTAATTCCAAGAAA-GGACAGTGTTCATTAAGCATCTC-CCC-CAAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956336 64 - 7032639 CTCT--ATCATTTCATTTTCTGTAATTCCAAGAAA-GGCCAATGTTCATTAAGCATCTT-CCC-CAAAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882066 66 - 65901067 CTCCTTGTCATTTCATTTCCTATAATTCTAAGAAA-GGCTGATGTTCATTAAGCACCCC-CCA-AAAAA i micMur3.chr16 C 0 I 25 s proCoq1.NW_012135969v1 2968830 66 + 8555354 CTCCTGGTCATTTCATTTCCTATAATTCCAAGAAA-AGCTGATGTTCATTAAGCATCCC-CCC-CAAAA i proCoq1.NW_012135969v1 C 0 I 5 s otoGar3.GL873537 22777205 67 + 28711273 CTCTTTATAATTTAATTTCCTAAAATCCCAAGAAA-AGCTGATGTTCATTAAGCTCCCCACCT-CAAAA i otoGar3.GL873537 C 0 I 3 s mm10.chr11 22047170 61 - 122082543 CTCCTTGT-ATTCCATGGCCTATAATTCTAAGGAA-AGCCAGTGTTCACTG----TTTC-TCT-CAATA i mm10.chr11 I 1654 C 0 s canFam3.chr9 21388289 62 + 61074082 TTCTATATCACTTTATTTTCTATAATTTCAAGAAA-GGCCACTGTTCATTG----TCTC-CTC-CAACA i canFam3.chr9 I 4 I 2 s dasNov3.JH570468 361043 66 - 852752 CTCTTCACTCTTACATTTCCTGTAGTTCCAAGAAA-GGCCAATACTAATTAAGCCTCTC-TTA-ACAAA i dasNov3.JH570468 C 0 C 0 a score=194841.000000 s hg38.chr17_GL383564v2_alt 63571 23 + 133151 CATT-AATCTT-AC---CCCACACCCCA s panTro5.chr17 16250162 23 + 83181570 CATT-AATCTT-AC---CCCACACCCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157646 23 + 83442489 CATT-AATCTT-AC---CCCACACCCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992659 22 + 4267968 CATT-AATCTT-AC---CCCACA-CCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973060 24 - 2193130 CATTAAATCTT-AC---TCCACACCCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045163 23 - 77216781 CATT-AATCTT-AC---TCCACACCCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957772 23 - 80997621 CATT-AATCTT-AC---TCCACACCCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014014 23 + 10377808 CATT-AATCTT-AC---TCCACACCCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901130 23 - 8458610 CATT-AATCTT-AC---TCCACACTCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856875 24 + 75148670 CATT-AATCTTAAC---TCCACACCCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080314 23 + 4244037 CATT-AATCTT-AC---TCCACACCCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108168 23 + 4569836 CATT-AATCTT-GC---CCCACACCCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072367 23 - 159171411 CATT-AATCTT-AA---CCCACTCCCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792689 23 + 3513951 CATT-AATCTG-AA---CCCACTCCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841590 23 + 1920343 CATT-GATCTT-AA---TCCACTCCCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956400 23 - 7032639 CATT-AATCTT-AA---CCCACTCCCCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2968901 12 + 8555354 CAAT-TACCAT-AC-------------- i proCoq1.NW_012135969v1 I 5 I 5 s otoGar3.GL873537 22777275 17 + 28711273 CATT-GATCTT-AC---TGAAT------ i otoGar3.GL873537 I 3 I 5 s mm10.chr11 22047231 24 - 122082543 CACA-ACTCTC-ACGTCTTCATACCT-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21388353 15 + 61074082 CATT-AATCCT-AT---TCC-------- i canFam3.chr9 I 2 I 3 s dasNov3.JH570468 361109 18 - 852752 TATT-AACTCT-AC---CCCTCC----- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35882132 25 - 65901067 I a score=519009.000000 s hg38.chr17_GL383564v2_alt 63594 33 + 133151 -----CCCCACTTGCCTCATCCCTGAATTTTTAAAGCT s panTro5.chr17 16250185 28 + 83181570 -----C-----TTGCTTCATCCCTGAATTTTTAAAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157669 28 + 83442489 -----C-----TTGCTTCATCCCTGAATTTTTAAAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992681 28 + 4267968 -----C-----TTGCCTCATCCCTGAATTTTTAAAGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973084 28 - 2193130 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045186 28 - 77216781 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957795 28 - 80997621 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014037 28 + 10377808 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901153 28 - 8458610 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856899 28 + 75148670 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080337 28 + 4244037 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108191 28 + 4569836 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072390 28 - 159171411 -----C-----TTGCCTCAACTCTGAATTTTTAAAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792712 28 + 3513951 -----C-----TTGCCTCATCTCTGAATTTCTAAAGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841613 28 + 1920343 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956423 28 - 7032639 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882157 28 - 65901067 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i micMur3.chr16 I 25 C 0 s proCoq1.NW_012135969v1 2968918 28 + 8555354 -----C-----TTGCCTCATCTCTGAATTTTTAAAGCT i proCoq1.NW_012135969v1 I 5 C 0 s otoGar3.GL873537 22777297 28 + 28711273 -----C-----TTGCTTCACCTCTGAATTTTTAAAGCT i otoGar3.GL873537 I 5 C 0 s mm10.chr11 22047255 27 - 122082543 -----------TTGCCCCATCTTTGAATTTTTAAAGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21388371 28 + 61074082 -----C-----TTGACTCATATCTAAATTATTAAAGCT i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 361127 33 - 852752 CCTCAC-----TTTCCTCATCACTGAATCTTTCAAGTT i dasNov3.JH570468 C 0 I 1963 a score=1325505.000000 s hg38.chr17_GL383564v2_alt 63627 100 + 133151 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTTATTTAATCCTATCTGATTGACACAACTGCAATcaatcatctatag-tgtgtgctgggtactgtggg s panTro5.chr17 16250213 100 + 83181570 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACTGCAATcaatcatctatag-tgtgtgctgggtactgtggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157697 100 + 83442489 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACTGCAATCAATcatctatag-tgtgtgctgggtactgtggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992709 100 + 4267968 TTCAATTTTATAG--GC--CAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACGGCAATCAATcatctatag-tgtgtgctgggtactgtggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973112 102 - 2193130 TTCAGTTTTATAG--GCCACAGTCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACTGCGATcaatcatctattg-tgtgtgctgggtactgtggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045214 102 - 77216781 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAGTcatctactg-tttgtgctggatactgtggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957823 102 - 80997621 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAGTCATCTACTG-TTTGTGCCGGATACTGTGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014065 102 + 10377808 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAGTcatctactg-tttgtgccggatactgtggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901181 102 - 8458610 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAATcatctactg-tttgtgccggatactgtggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64856927 102 + 75148670 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGATGCAACTACAATCAATCATCTACTG-TTTGTGCCGGATACTGTGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080365 102 + 4244037 TTCAATTTTATAG--GCCACCATCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGAGGCAACTACAATCAATcatctactg-tttgtgccagatactgtggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108219 99 + 4569836 TTCAATTTTATAG--GCCACAATCTCAATTAT--------CCGTTTAATTTAATCCTATCTGATTAACACAACTACAATCA---atctactg-tgtgtgccaggtattgtggg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072418 101 - 159171411 TTCAATTTTATAG--GC-ACAACCTCAATTAT--------CCATTTAATTTAATCCTGTCTGATTGACACAACTGCAACCAATCACCTACTG-TGTGTGCCGGGTACTGCGGG i calJac3.chr5 C 0 I 12 s saiBol1.JH378271 1792740 101 + 3513951 TTCAATTTTATAG--GC-ACAACCTCAATTAT--------CCATTTAATTTCATCCTATCTGATTGACACAACTGCAATCAATcacctattg-tgtgtgccgggtactgtggg i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1841641 97 + 1920343 TTCAATTTTATAG--GC-ACAACCTCAAATAT--------CCATTTAATTTAATCCTATCTGATTGACACAACCA----CAATcacctattg-tgtgtgccgggtactgtggg i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6956451 101 - 7032639 TTCAATTTTATAG--GC-ACAACCTCAATTAT--------CCATTTAATTTAATCCTATCTGATTGACACAACCACAATCAATcacctattg-tgtgtgccgggtactgtggg i aotNan1.NW_018502359v1 C 0 I 1 s micMur3.chr16 35882185 102 - 65901067 CTTAAGTCTGTAT--GCCATAATCTCAATTAT--------GCATTCAAATTAattctatccaattgacacaactgccattgatcatctgttg-tgtgtgccgggtactgtgtg i micMur3.chr16 C 0 I 1 s proCoq1.NW_012135969v1 2968946 102 + 8555354 GTCAAGTCCATAT--GCCACAATCTCAATTAT--------CCATTCAAATTAATTCTATCTGATTGACACAACTGCCattgatcatctgttg-tgtgtgccaggtactgtgtg i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22777325 100 + 28711273 CTCACATCCA-AT--GCCACGATCTCAACGAT--------CCATTCACATTAATTCTACCTGAttgacacaacttctatcagtcatctatta-cgtgtgccaggtattgtgt- i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22047282 113 - 122082543 GTCAAGTCTATAATTGTTATGTATCCAGTTATTATTATTATTATTTCAGTTAATGATCTCTGACTTAAACAAATACAATCAATTATCTATTGTTGTATGCCAAACGCTATGTC i mm10.chr11 C 0 I 1 s canFam3.chr9 21388399 101 + 61074082 CTCAATTTAATCA--GCCACCATCTCAATTTT--------TCATTTGATTTGACACTATTTAACCTACACAACTGCAATCAACCATCTTCTG-TGTGTGTCA-ATACTGTGTA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 1963 - 852752 I a score=5500.000000 s hg38.chr17_GL383564v2_alt 63727 1 + 133151 c s panTro5.chr17 16250313 1 + 83181570 c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157797 1 + 83442489 c i panPan2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973214 1 - 2193130 c i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045316 1 - 77216781 c i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957925 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014167 1 + 10377808 c i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901283 1 - 8458610 c i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857029 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080467 1 + 4244037 c i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108318 1 + 4569836 c i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047395 1 - 122082543 I e proCoq1.NW_012135969v1 2969048 1 + 8555354 I e micMur3.chr16 35882287 1 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21388500 0 + 61074082 C e otoGar3.GL873537 22777425 1 + 28711273 I e aotNan1.NW_018502359v1 6956552 1 - 7032639 I e cebCap1.NW_016107730v1 1841738 1 + 1920343 I e saiBol1.JH378271 1792841 1 + 3513951 I e calJac3.chr5 46072519 12 - 159171411 I e gorGor5.CYUI01015385v1 3992809 0 + 4267968 C a score=696758.000000 s hg38.chr17_GL383564v2_alt 63728 52 + 133151 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgttt s panTro5.chr17 16250314 52 + 83181570 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157798 52 + 83442489 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992809 52 + 4267968 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973215 52 - 2193130 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045317 52 - 77216781 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957926 52 - 80997621 GGTACTGAGAA-ACACAAATAA-GTGAATCCCAGTCTCGGCCCACAGC-ATGTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014168 52 + 10377808 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901284 52 - 8458610 agtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857030 52 + 75148670 GGTACTGAGAA-ACACAGATAA-GTGAATCCCAGTCTCGGCCCACAGC-ATGTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080468 52 + 4244037 ggtactgagaa-acacaaataa-gtgaatcccagtctcggcccacagc-atgtct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108319 52 + 4569836 agtactgagaa-atacaaataa-gtgaatcccagtctcggcccacagc-atgtct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072531 52 - 159171411 GGTGCTGAGAA-ACACAAATAA-ATGAATCCCAGTCTCAGCCGACAGC-CTGTTT i calJac3.chr5 I 12 C 0 s saiBol1.JH378271 1792842 52 + 3513951 ggtgctgagaa-acacaaatca-gtgaatcccagtctcagccaacagc-ctgttt i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1841739 52 + 1920343 ggtgctgagaa-acacaaataa-gtgaatctcagtctcagccgacagc-ctgttt i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6956553 52 - 7032639 ggtgctgagaa-acacaaatca-gtgaatcccagtctcagccgacagc-ctgttt i aotNan1.NW_018502359v1 I 1 C 0 s micMur3.chr16 35882288 51 - 65901067 ggtcctgagaa-gcacaaataa-gtgaaccccagtcctggcccaccgc-atgtt- i micMur3.chr16 I 1 C 0 s proCoq1.NW_012135969v1 2969049 52 + 8555354 ggtaccgagaa-gcacaagtaa-gtgaaccccagtcctggcctatggc-acgttt i proCoq1.NW_012135969v1 I 1 I 34 s otoGar3.GL873537 22777426 31 + 28711273 ggtgctgacat-gtaca---------aaccccagt--------------atattt i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22047396 47 - 122082543 ------GAAAA-GCAGAAACCCTACAAACTCCAGTCCTGGCTCATAGCAATATT- i mm10.chr11 I 1 C 0 s canFam3.chr9 21388500 53 + 61074082 GATGCTGAGAGCACATGGATAA-GTGAGCCCCAGGCCTGGCCAACAGC-ATGTTC i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 1963 - 852752 I a score=444199.000000 s hg38.chr17_GL383564v2_alt 63780 34 + 133151 tacagtttagagtggatgagac---aaaGCTACAGTC s panTro5.chr17 16250366 34 + 83181570 tacagtttagagtggatgagac---aaaGCTACAGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157850 34 + 83442489 tacagtttagagtggatgagac---aaagctacagtc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992861 34 + 4267968 tacagtttagagtggatgagac---aaagctacagtc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973267 34 - 2193130 tacagtttagagtggatgagac---aaagctacagtc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045369 34 - 77216781 tacagtttagagtgcatgagac---aaagctacagtc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27957978 34 - 80997621 TACAGTTTAGAGTGCATGAGAC---AAAGCTACAGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014220 34 + 10377808 tacagtttagagtgcatgagac---aaaGCTACAGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901336 34 - 8458610 tacagtttagagtgcatgagac---aaagctacagtc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857082 34 + 75148670 TACAGTTTAGAGTGCATGAGAC---AAAGCTACAGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080520 34 + 4244037 tacagtttagagtgcatgagac---aaaGCTACAGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108371 34 + 4569836 tacagtttagagtgcatgagac---aaagctacagcc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072583 34 - 159171411 TATAGTCTAGAGTGGATGAGAC---AAAGATACAGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792894 34 + 3513951 tatagtttagagtggatgagac---aaagatacagtc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841791 34 + 1920343 tatagtttagagtggatgagac---aaagatagagtc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956605 34 - 7032639 tatagtttagagtggatgagag---aaagatacagtc i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882339 34 - 65901067 tatagtctagagtggatgagac---aaagaggtggcc i micMur3.chr16 C 0 I 47 s otoGar3.GL873537 22777457 33 + 28711273 -acagtccagaatggatgagac---aaagagataacc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047443 35 - 122082543 TACAGCCTGGAATGTGTAACACAAAAAAGATAGAT-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21388553 33 + 61074082 -ACAATCTAGAGTGAACAAGAC---AAGGAAACAACC i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969101 34 + 8555354 I e dasNov3.JH570468 361160 1963 - 852752 I a score=92279.000000 s hg38.chr17_GL383564v2_alt 63814 8 + 133151 ATCATAGA-- s panTro5.chr17 16250400 8 + 83181570 ATCATAGA-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157884 8 + 83442489 atcataga-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992895 8 + 4267968 gtcataga-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973301 8 - 2193130 atcataga-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045403 8 - 77216781 atcataga-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958012 8 - 80997621 ATCATAGA-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014254 8 + 10377808 ATCATAGA-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901370 8 - 8458610 atcataga-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857116 8 + 75148670 ATCGTAGA-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080554 8 + 4244037 ATCATAGA-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108405 8 + 4569836 atcataga-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072617 8 - 159171411 ATCATGGA-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792928 8 + 3513951 atcatgga-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841825 8 + 1920343 atcatgga-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956639 8 - 7032639 atcacgga-- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22777490 8 + 28711273 aTCATAGA-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047478 8 - 122082543 ATCATTGG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21388586 10 + 61074082 CTCATACAGA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969101 34 + 8555354 I e micMur3.chr16 35882373 47 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I a score=716198.000000 s hg38.chr17_GL383564v2_alt 63822 54 + 133151 CAAATATCAGTGTGGCTCAAGAAAGGTGCAGATAAAGAATTACGAATTTCAGAT s panTro5.chr17 16250408 54 + 83181570 CAAATATCAGTGTGGCTCAAGAAAGGTGTAGATAAAGAATTACGAATTTCAGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157892 54 + 83442489 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTACGAATTTCAGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992903 54 + 4267968 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTACGAATTTCAGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973309 54 - 2193130 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTACAAATTTCAGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045411 54 - 77216781 caaatatcagtgtggcTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958020 54 - 80997621 CAAATATCAGTGTGGCTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014262 54 + 10377808 CAAATATCAGTGTGGCTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901378 54 - 8458610 caaatatcagtgtggcTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857124 54 + 75148670 CAAATATCAGTGTGGCTCAAGAAACGAATAGATAAAGAATTATGAATTTCAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080562 54 + 4244037 CAAATATCAGTGTGGCTCAAGAAATGAATAGATAAAGAATTATGAATTTCAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108413 54 + 4569836 caaatatcagtgtggcTCAAGAAAGGTGTAGATAAAGAATTATGAATTTCAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072625 54 - 159171411 CGAATACCAGTATGGCTCAAGAAAGGTGTAGATAAAGAGTTATGAATTTCAGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792936 54 + 3513951 caaataccagtgtggcTCAAGAAAGGTGTAGATAAAGAGTTATGAATGTCAGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841833 54 + 1920343 caaataccagtgtggcTCAAGAAAGGTGTAGATAAAGAGTTATGAATTTCAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956647 54 - 7032639 cacataccagtgtggcTCAAGAAAGGTGTAGATAAAGAGTTATGAATTTCAGGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2969135 54 + 8555354 cacaCATCAGTGCGGCTCGAGAAAGGTGTAAGTAAAAAATTGTGAATGTCAGAG i proCoq1.NW_012135969v1 I 34 C 0 s otoGar3.GL873537 22777498 43 + 28711273 ----------TAAAATTC-AAAAAGGTGTAAGTAAAGAACTATGAATTTCAGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047486 54 - 122082543 CAAACAGCAAGATGGCTCAAGGGAGATAAAAATAAAGAACTACAAATTTCAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21388596 54 + 61074082 CAAACAGCAGTGTGGCTCAAGAAGGGTGTAAATGAAGAATGATGAATTTCTGAA i canFam3.chr9 C 0 C 0 e micMur3.chr16 35882373 47 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I a score=186752.000000 s hg38.chr17_GL383564v2_alt 63876 11 + 133151 GTGTGAGAGAA s panTro5.chr17 16250462 11 + 83181570 GTGTGAGAGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157946 11 + 83442489 GTGTGAGAGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992957 11 + 4267968 GTATGAGAGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973363 11 - 2193130 GTGTGAGAGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045465 11 - 77216781 GTGTGAGAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958074 11 - 80997621 GTGTGAGAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014316 11 + 10377808 GTGTGAGAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901432 11 - 8458610 GTGTGAGAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857178 11 + 75148670 GTGTGAAAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080616 11 + 4244037 GTGTGAGAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108467 11 + 4569836 GTGTGAGAGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072679 11 - 159171411 ATGTGAGAGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1792990 11 + 3513951 ATGTGAGAGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841887 11 + 1920343 ATGTGACAGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956701 11 - 7032639 ATGTGAGAGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882420 11 - 65901067 GTGTAAGAGAA i micMur3.chr16 I 47 C 0 s proCoq1.NW_012135969v1 2969189 11 + 8555354 GTGTAAGAGAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777541 11 + 28711273 GTATAGGAGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047540 11 - 122082543 GTGTGAGAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21388650 11 + 61074082 GTGTGAGAGAa i canFam3.chr9 C 0 I 47 e dasNov3.JH570468 361160 1963 - 852752 I a score=498083.000000 s hg38.chr17_GL383564v2_alt 63887 86 + 133151 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTCTGCC s panTro5.chr17 16250473 86 + 83181570 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTGTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16157957 83 + 83442489 TGAAAAGAAGAGGCTCC----AA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTGTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3992968 86 + 4267968 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAGTCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTCTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973374 86 - 2193130 TGAAAAGAAGAGGCTCC-AAGAA-GGAGGGAGCACTCAATCAAAGCCTTGAAAACCCAAATGTTCTGTTGATATAAATTTTGTCTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s cerAty1.NW_012006043v1 1901443 2 - 8458610 ------------------------------------------------------------------------------------TG-- i cerAty1.NW_012006043v1 C 0 C 0 s colAng1.NW_012122154v1 2108478 86 + 4569836 TGAAAAGAAGAGGCTCC-AAGAA-AGAGGGACCACTCAGTCAAAGCCTTGAAAACCCAACTATTCTGTTGATATAAATTTTGTCTGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072690 87 - 159171411 TGAAAAGAAGAGGCTCCAAAGAA-GGGGGCAGCACTCAGTCAAAGCCTTGAAAACCCAAGTGTTGCGCTGACATAAATTGTGTCTGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1793001 87 + 3513951 TGAAAAGAAGAGGCTCCAAAGAA-GGGGGCAGCACTCGATCAAAGCCTTGAAAACCCAAATGTTCTGTTGACATAAGTTTTGTCTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841898 87 + 1920343 TGAAAAGAAGAGGCTCCAAAGAA-GGGGGCAGCACTCGATGAAAGCCTTGAAAACCCAAATGTTCTGTTGACATAAATTTTGTCTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956712 88 - 7032639 TGAAAAGAAGAGGCTCCAAAGAAGGGGGGCAGCACTCGATCAAAGCCTTGAAAACCCAAATGTTCTGTTGACATAAATCTTGTCTGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882431 86 - 65901067 TGGTAAGAAGAGGCTCC-AAGAA-GGAGGTAGCACTCGCACAGGGCTTTGAAAACCCAAGTGTTCTGTTCATGCAAACTTTATCTGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2969200 86 + 8555354 TGGTAAGAAGAGGCTCC-AAGAA-GGAGATAGCGCCTGCACAGGGCTTTGGAAACCCAAGTGTTCTGTTCGTGTAAATTTTGTCTGCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777552 85 + 28711273 TGAAGAGAAGAGGCTCC-AAGAA-GGAGGTAGCATTCATATAGGGCTTT-AAAACACAAATGTTCTCTTCATGAACATTTTGTCTGCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047551 80 - 122082543 TGGTAAGAAAAGACTTG-GAGAA-CAAGATAGCATGTGATAAGTACTTTGGAAA------TGTGTTCATTACATAGAGTTCATCTGCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21388708 85 + 61074082 TGGTAAGAAAAGGCTTT--ATGA-GGAGGTAGCCCTCATTCAGGGCTTTGAAAACCTAAACATTCCATTCATATACATATTGTCTGCC i canFam3.chr9 I 47 C 0 e dasNov3.JH570468 361160 1963 - 852752 I e macNem1.NW_012014910v1 2014327 0 + 10377808 C e manLeu1.NW_012106252v1 2080627 0 + 4244037 C e chlSab2.chr16 64857189 0 + 75148670 C e rheMac8.chr16 30045476 0 - 77216781 C e macFas5.chr16 27958085 0 - 80997621 C a score=3747036.000000 s hg38.chr17_GL383564v2_alt 63973 251 + 133151 TGTCTTGTTGACTGCAGGCCCTTCAGCAGAGGCAATATCATCACCTAATTAAAGACGA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTTTAGGCCAT s panTro5.chr17 16250559 251 + 83181570 TGTCTTGTTGACTGCAGGCCCTTCAGTAGAGGCAATATCATCACTTAATTAAAGACAA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTGTAGGCCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158040 251 + 83442489 TGTCTTGTTGACTGCAGGCCCTTCAGTAGAGGCAATATCATCACTTAATTAAAGACAA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTGATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTGTAGGCCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993054 250 + 4267968 TGTCTTGTTGACTGCAGGCCCTTCAGCAGAGGCAATATCATCACCTAATTAAAGACGA-TATAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATG-GGAGGTTATTAAAACTTTATATACTTCGCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGGTGAGTGTGTGTAGGCCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973460 251 - 2193130 TATCTTGTTGACTACAGGACCTCCAGCAGAGGAAATATCATCACGTAATTAAAGCTGA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTGAGGTGAGTGTGTGTAGGCCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045476 248 - 77216781 TGTCTTGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCACG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958085 248 - 80997621 TGTCTTGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014327 248 + 10377808 TGTCTTGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901445 246 - 8458610 --TCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857189 248 + 75148670 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080627 248 + 4244037 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCATG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGCCTGGTCAGATGGGTGTGTGTAGGCCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108564 248 + 4569836 TGTCTCGTTGACTGCAGGCCCTTCAGAAGAGGCAATATCGTCACCTAATTAAAGCCTA-TGTAAACCATGGAATACTGTAAGTGGAATAAATAAGGAAGAGTAAAACTAATGAAAATTCACG---AGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAACGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGTCAGATGAGTATGTGTAGGCCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46072777 246 - 159171411 TGTCTTATTGACTGCAGGCCCTTCGGCAGAGACAATAGCATCGCCTAATTAAATCTTA-CGTAACCTGTGGAATACTGGAAGTGGAATAAATAAGGAAGGGTAACACTAATGAAAATTCAAGAGAAGGTTATT-AAACTTTATATACTTCCCACAGTTTCAACTTCAGTCAATGATTACTGTATGATATTAGCATAATTCTG----AAAGTTTGCTGGGAAATGTCTGGAAAGATGATGGTGTGTAGGCCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1793088 251 + 3513951 TGTCTTATTGACTGCAGGACCTTCAGCAGAGACAATATCATCACCTAATTAAATCTTA-TGTAAACCATGGAATACTGGAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCATGAGAAGGTTATTAAAACTTTATATACATCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGAAAGATGAGGGTGTGTAGGCCAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1841985 248 + 1920343 TGTCTTATTGACTGCAGGCCCTTTAGCAGAGAC---ATCATCACCTAATTAAATCTTA-TGTAAACCATGGAATACTGGAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCACGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGAGAAATGTCTGGAAAGATGAGGGTGTGTAGGCCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6956800 251 - 7032639 TGTCTTATTGACTACAGGCCCTTCAGCAGAGACAATATCATCACCCAATTAAATCTTA-TGTAAACCATGGAATGCTGGAAGTGGAATAAATAAGGAAGAGTAACACTAATGAAAATTCACGAGAAGGTTATTAAAACTTTATATACTTCCCATAGTTTCAACTTCAATCAATGATTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGGGAAATGTCTGGAAAGATGAGGGTGTGTAGGCCAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882517 252 - 65901067 TGTCAGGTTGACTGCAGGGCCTTCAACAGAGACAATATCACCACCTAATTAGAGCCTAGTGTGTACCATGGAATACTGGCAGTGGAATAAGTAAGGAAGAATGTCACTAATGAGAATTCATGGGAAGGTTATTAAAACTTTATATACTTCCCACAGTTTCAACTTCAATCAGCTATTACTCTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGAGATGCATTTGCACAGATGAGTGTGTGTAGGCCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2969286 251 + 8555354 TGTC-GACTGACTGCAAACCCTTCAACAGAGACGATATCACCACCTAATTGGAGCCTAGTGTGCACGATGGAATACTGTCAGTGGAATAAATAAGGAAGAGTAACACTAATGAGAATTCATGGGAAGGTTATTAAAACTTTATATACTTCCCACAGTTTCAACTTCAATCAACTCTTACTGTATGATATTAGCATAATTCTGAAATAAAGTTTGCTGAGATACGTTTGGACAGATGAGTACGTGTAGGACTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22777637 224 + 28711273 TGCT-GGTGGACTGCGGGCCTTTCAACACAGACAATATCATCACCTCTTTAAAGCCTAGTGTAAACCATGGAATATGCTAAGTAGAATAAATAAAGAAGAGTAACACTAATGAGAATTCATGGAAAGGTTATTAAAAGTTTATATACTTCCCATGGTTTCAACTTCAATCAACTATTACTGTATGATATTAGCATAATTCTCAAATAAATTTTGCTGAGATAGAT--------------------------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047631 252 - 122082543 TGTCCTGTTGACTGCAGGACCTTCAACTGCGAAAGAATCACCTTCCAATCAAAGCAGAATGCAAACCAAGGCATTCTGGGAGTGGAATGAGTAAGGAAGAGTAACACTAGTGAGGATTCACGATAAGGTTATTAAAACCTTATGCACCTCCCACAGTTCTGACTTCAATCAACTCTTGCTATATGATATTAGCATAATTCTGAAATAAAATTTGATGGCACATGCTTGGACAGATGAGAGTGTGTAGGTTCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21388793 215 + 61074082 ----------------TATCCTTCAAGAGAGATTGTATCTTTATCCAATTAAAGCCTAGTGTAAACCATAGAATACAGTAAGTGGAATA---AAGGAACAGTAATGCTAATAAGTATTCATG---AGGTTATTAAAACTT---------------GTTCCAACTTCAATCAATGATTACTACATGATATTAGCATAATTCTGAAATAAAGTTTGATGAGCTGTGTTTAGACAGATGAATGTGTGCAGGTCTG i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 1963 - 852752 I a score=38343.000000 s hg38.chr17_GL383564v2_alt 64224 3 + 133151 AGA s panTro5.chr17 16250810 3 + 83181570 AGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158291 3 + 83442489 AGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993304 3 + 4267968 AGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973711 3 - 2193130 AGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045724 3 - 77216781 AGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958333 3 - 80997621 AGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014575 3 + 10377808 AGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901691 3 - 8458610 AGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857437 3 + 75148670 AGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080875 3 + 4244037 AGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108812 3 + 4569836 AGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46073023 3 - 159171411 AGG i calJac3.chr5 C 0 I 1 s cebCap1.NW_016107730v1 1842233 3 + 1920343 AGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957051 3 - 7032639 AGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35882769 3 - 65901067 AGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2969537 3 + 8555354 AGA i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22047883 3 - 122082543 AGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21389008 3 + 61074082 ACA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777861 0 + 28711273 C e saiBol1.JH378271 1793339 0 + 3513951 C a score=133033.000000 s hg38.chr17_GL383564v2_alt 64227 12 + 133151 AGAGGGAAAGTT s panTro5.chr17 16250813 12 + 83181570 AGAGGGAAAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158294 12 + 83442489 AGAGGGAAAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993307 12 + 4267968 AGAGGGAAAGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973714 12 - 2193130 AGAGGGAAAGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045727 12 - 77216781 AGAGGGAAAGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958336 12 - 80997621 AGAGGGAAAGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014578 12 + 10377808 AGAGGGAAAGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901694 12 - 8458610 AGAGGGAAAGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857440 12 + 75148670 AGAGGGAAAGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080878 12 + 4244037 AGAGGGAAAGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108815 12 + 4569836 AGAGGGAAAGTT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35882772 12 - 65901067 AGAGGGAAAGTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2969540 12 + 8555354 AGAGGGAAAGTT i proCoq1.NW_012135969v1 C 0 I 1730 s mm10.chr11 22047886 12 - 122082543 AGAGGGAAAGTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21389011 12 + 61074082 AGAGGGAAAGTT i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777861 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=10920.000000 s hg38.chr17_GL383564v2_alt 64239 1 + 133151 T s panTro5.chr17 16250825 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158306 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993319 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973726 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045739 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958348 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014590 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901706 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857452 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080890 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108827 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35882784 1 - 65901067 T i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22777861 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047898 1 - 122082543 T i mm10.chr11 C 0 C 0 s canFam3.chr9 21389023 1 + 61074082 T i canFam3.chr9 C 0 I 418 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e dasNov3.JH570468 361160 1963 - 852752 I e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=9555.000000 s hg38.chr17_GL383564v2_alt 64240 1 + 133151 T s panTro5.chr17 16250826 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158307 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993320 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973727 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045740 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958349 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014591 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901707 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857453 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080891 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108828 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35882785 1 - 65901067 T i micMur3.chr16 C 0 I 1708 s otoGar3.GL873537 22777862 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22047899 1 - 122082543 T i mm10.chr11 C 0 I 295 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=53436.000000 s hg38.chr17_GL383564v2_alt 64241 9 + 133151 ggccaggtg s panTro5.chr17 16250827 9 + 83181570 ggccaggcg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158308 9 + 83442489 ggccaggcg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993321 9 + 4267968 ggccagggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973728 9 - 2193130 ggccaggtg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30045741 9 - 77216781 ggccaggca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958350 9 - 80997621 ggccaggca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014592 9 + 10377808 ggccaggca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901708 9 - 8458610 ggccaggca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857454 9 + 75148670 ggccaggca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080892 9 + 4244037 ggccaggca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108829 9 + 4569836 ggccaggca i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22777863 9 + 28711273 GGACAGATG i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=671759.000000 s hg38.chr17_GL383564v2_alt 64250 117 + 133151 cagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctgtactgaaaatac s panTro5.chr17 16250836 117 + 83181570 cagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctgtactgaaaatac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158317 117 + 83442489 cagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcatgaggtcaggagattgagaccatcctggctaacacggtgaaaccccatctgtactgaaaatac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993330 117 + 4267968 cagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacacggcgaaaccccgtctgtactgaaaatac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1973737 117 - 2193130 cggtggctcacgcctataatcccagcactttgggaggctgaggcaggtggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactgaaaatac i nomLeu3.chrUn_GL397460_1 C 0 I 169 s rheMac8.chr16 30045750 117 - 77216781 cagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctagtaaaaatac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958359 117 - 80997621 cagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccatctctagtaaaaatac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014601 117 + 10377808 cagtggctcatacctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcagaagatcaagaccatcctggctaacacggtgaaaccccatctctagtaaaaatac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901717 117 - 8458610 cagtggctcacacctgtaatcccaacactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccctctctagtaaaaatac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857463 117 + 75148670 cagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcatgaggtcaggagatcaagatcatcctggctaacacggtgaaaccccatctctagtaaaaatac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2080901 117 + 4244037 cagtggctcacacctgtaatcccaacactttgggaggctgaggcgggtggatcacgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccctctctagtaaaaatac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108838 117 + 4569836 cagtggctcacacttgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaggagattgagaccatcctggctaatatggtgaaaccccatttctagtaaaaatac i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e otoGar3.GL873537 22777872 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=69863.000000 s hg38.chr17_GL383564v2_alt 64367 25 + 133151 aaaaaaaaaa-aaaaaaaa-------------------------ttagcca s panTro5.chr17 16250953 27 + 83181570 aaaaaaaaaa-aaaaaaaa--------------aa---------ttagcca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158434 19 + 83442489 aaaaaaaaaa-at-------------------------------taagcca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993447 41 + 4267968 aaaaaaaaaa-aaaaaaaaaaaaaaaaaaaaaaaa---------ttagcca i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30045867 29 - 77216781 aaaaaaaaag-aaaaaaaa------------aaaa---------ttagcca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958476 29 - 80997621 aaaaaaaaaa-agaaaaaa------------aaaa---------ttagcca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014718 30 + 10377808 aaaaaaaaaagaaaaaaaa------------aaaa---------ttagcca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901834 26 - 8458610 aaaaaaaaat----aaaaa------------aaaa---------ttagcca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857580 38 + 75148670 aaaaaaaaaa-aaaaaaaa------------aaaaaaaaaaaattaagcca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081018 29 + 4244037 aaaaaaaaag-aaaaaaaa------------aaaa---------ttagcca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108955 22 + 4569836 aaaaaaaaaa--------a------------aaaa---------ttagcca i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e otoGar3.GL873537 22777872 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I e nomLeu3.chrUn_GL397460_1 1973854 169 - 2193130 I a score=126894.000000 s hg38.chr17_GL383564v2_alt 64392 27 + 133151 ggcatggtggcacacacctgtagtccc s panTro5.chr17 16250980 27 + 83181570 ggcatattggcacacacctgtagtccc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158453 27 + 83442489 ggcatattggcacacacctgtagtccc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993488 27 + 4267968 ggcatggtggcacacacctgtagtccc i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30045896 27 - 77216781 ggcgtggtggcacgcacctgtagtccc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958505 27 - 80997621 ggcgtggtggcacgcacctgtagtccc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014748 27 + 10377808 ggcgtggtggcacgcacctgtagtccc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901860 27 - 8458610 ggcgtggtggcacgcacctgtagtccc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857618 27 + 75148670 ggcgtggtggcacgtacctgtagtccc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081047 27 + 4244037 ggcgtggtggcacgcacctgtagtccc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2108977 27 + 4569836 ggcatggtgggacgcacctgtaatccc i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22777872 15 + 28711273 ------------AGCATGTGTAGACCT i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I e nomLeu3.chrUn_GL397460_1 1973854 169 - 2193130 I a score=565906.000000 s hg38.chr17_GL383564v2_alt 64419 115 + 133151 agctactcaggaggctgaggcaggggaatagcttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctggatgatagagtgagactctgtctc s panTro5.chr17 16251007 115 + 83181570 agctactcaggaggctgaggcaggggaatagcttgaacccaagaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctggatgatagagtgagactttgtctc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158480 115 + 83442489 agctactcaggaggctgaggcaggggaatagcttgaacccaagaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctggatgatagagtgagactttgtctc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993515 115 + 4267968 agctactcaggaggctgaggcaggggaatagcttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctggatgatagagtgagactctgtctc i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30045923 115 - 77216781 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactacactccagcctgggtgatagagtgagactccatctt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958532 115 - 80997621 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactacactccagcctgggtgatagagtgagactccgtctt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014775 115 + 10377808 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactacactccagcctgggtgatagagtgagactccgtctt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1901887 115 - 8458610 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactacactccagcctgggtgatagagtgagactccgtctt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857645 115 + 75148670 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagcgaagatcgcgccactacactccagcctgggtgatagagtgagactccgtctt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081074 115 + 4244037 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagatcgcgccactacactccagcctgggtgatagagtgagactccgtctt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109004 115 + 4569836 agctactcaggaggttgaggcaggggaattgcttgaacccaggaggcagaggttgcagtgagccaagaacgtgccactacactccagcctgggtgatagagtgagactctgtctc i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I e nomLeu3.chrUn_GL397460_1 1973854 169 - 2193130 I a score=18018.000000 s hg38.chr17_GL383564v2_alt 64534 3 + 133151 aaa s panTro5.chr17 16251122 3 + 83181570 aaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158595 3 + 83442489 aaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993630 3 + 4267968 aaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974023 3 - 2193130 aaa i nomLeu3.chrUn_GL397460_1 I 169 C 0 s rheMac8.chr16 30046038 3 - 77216781 aaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958647 3 - 80997621 aaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014890 3 + 10377808 aaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902002 3 - 8458610 aaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857760 3 + 75148670 aaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081189 3 + 4244037 aaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109119 3 + 4569836 aaa i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389024 418 + 61074082 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=31653.000000 s hg38.chr17_GL383564v2_alt 64537 6 + 133151 aaaaaa s panTro5.chr17 16251125 6 + 83181570 aaaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158598 6 + 83442489 aaaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993633 6 + 4267968 aaaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974026 6 - 2193130 aaaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046041 6 - 77216781 aaacaa i rheMac8.chr16 C 0 I 2 s macFas5.chr16 27958650 6 - 80997621 aaacaa i macFas5.chr16 C 0 I 2 s macNem1.NW_012014910v1 2014893 6 + 10377808 caacaa i macNem1.NW_012014910v1 C 0 I 2 s cerAty1.NW_012006043v1 1902005 6 - 8458610 aaacaa i cerAty1.NW_012006043v1 C 0 I 2 s chlSab2.chr16 64857763 6 + 75148670 aaacaa i chlSab2.chr16 C 0 I 2 s manLeu1.NW_012106252v1 2081192 6 + 4244037 aaacaa i manLeu1.NW_012106252v1 C 0 I 2 s colAng1.NW_012122154v1 2109122 6 + 4569836 aaaaaa i colAng1.NW_012122154v1 C 0 I 8 s canFam3.chr9 21389442 6 + 61074082 aaaaaa i canFam3.chr9 I 418 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I a score=910.000000 s hg38.chr17_GL383564v2_alt 64543 1 + 133151 a s panTro5.chr17 16251131 1 + 83181570 a i panTro5.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993639 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974032 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 I 1 s canFam3.chr9 21389448 1 + 61074082 a i canFam3.chr9 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I e macNem1.NW_012014910v1 2014899 2 + 10377808 I e colAng1.NW_012122154v1 2109128 8 + 4569836 I e manLeu1.NW_012106252v1 2081198 2 + 4244037 I e chlSab2.chr16 64857769 2 + 75148670 I e cerAty1.NW_012006043v1 1902011 2 - 8458610 I e rheMac8.chr16 30046047 2 - 77216781 I e macFas5.chr16 27958656 2 - 80997621 I e panPan2.chr17 16158604 0 + 83442489 C a score=5005.000000 s hg38.chr17_GL383564v2_alt 64544 1 + 133151 a s gorGor5.CYUI01015385v1 3993640 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974034 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 I 1 C 0 s rheMac8.chr16 30046049 1 - 77216781 a i rheMac8.chr16 I 2 I 30 s macFas5.chr16 27958658 1 - 80997621 a i macFas5.chr16 I 2 I 30 s macNem1.NW_012014910v1 2014901 1 + 10377808 a i macNem1.NW_012014910v1 I 2 I 36 s cerAty1.NW_012006043v1 1902013 1 - 8458610 a i cerAty1.NW_012006043v1 I 2 I 33 s chlSab2.chr16 64857771 1 + 75148670 a i chlSab2.chr16 I 2 C 0 s manLeu1.NW_012106252v1 2081200 1 + 4244037 a i manLeu1.NW_012106252v1 I 2 C 0 s colAng1.NW_012122154v1 2109136 1 + 4569836 a i colAng1.NW_012122154v1 I 8 C 0 s canFam3.chr9 21389449 1 + 61074082 a i canFam3.chr9 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e saiBol1.JH378271 1793339 0 + 3513951 C e calJac3.chr5 46073026 1 - 159171411 I e panPan2.chr17 16158604 0 + 83442489 C e panTro5.chr17 16251132 0 + 83181570 C a score=273.000000 s hg38.chr17_GL383564v2_alt 64545 1 + 133151 a s saiBol1.JH378271 1793339 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s canFam3.chr9 21389450 1 + 61074082 a i canFam3.chr9 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e calJac3.chr5 46073026 1 - 159171411 I e macNem1.NW_012014910v1 2014902 36 + 10377808 I e colAng1.NW_012122154v1 2109137 0 + 4569836 C e manLeu1.NW_012106252v1 2081201 0 + 4244037 C e chlSab2.chr16 64857772 0 + 75148670 C e cerAty1.NW_012006043v1 1902014 33 - 8458610 I e rheMac8.chr16 30046050 30 - 77216781 I e macFas5.chr16 27958659 30 - 80997621 I e nomLeu3.chrUn_GL397460_1 1974035 0 - 2193130 C e gorGor5.CYUI01015385v1 3993641 0 + 4267968 C e panPan2.chr17 16158604 0 + 83442489 C e panTro5.chr17 16251132 0 + 83181570 C a score=8976.000000 s hg38.chr17_GL383564v2_alt 64546 2 + 133151 ga s panTro5.chr17 16251132 2 + 83181570 ga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158604 2 + 83442489 ga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993641 2 + 4267968 ga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974035 2 - 2193130 ga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046080 2 - 77216781 GA i rheMac8.chr16 I 30 C 0 s macFas5.chr16 27958689 2 - 80997621 GA i macFas5.chr16 I 30 C 0 s macNem1.NW_012014910v1 2014938 2 + 10377808 GA i macNem1.NW_012014910v1 I 36 C 0 s cerAty1.NW_012006043v1 1902047 2 - 8458610 GA i cerAty1.NW_012006043v1 I 33 C 0 s chlSab2.chr16 64857772 2 + 75148670 ca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081201 2 + 4244037 ca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109137 2 + 4569836 ga i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1793340 2 + 3513951 GG i saiBol1.JH378271 C 0 C 0 s canFam3.chr9 21389451 2 + 61074082 aa i canFam3.chr9 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777887 0 + 28711273 C e aotNan1.NW_018502359v1 6957054 0 - 7032639 C e cebCap1.NW_016107730v1 1842236 0 + 1920343 C e calJac3.chr5 46073026 1 - 159171411 I a score=10920.000000 s hg38.chr17_GL383564v2_alt 64548 1 + 133151 a s panTro5.chr17 16251134 1 + 83181570 a i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158606 1 + 83442489 a i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993643 1 + 4267968 a i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974037 1 - 2193130 a i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046082 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958691 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014940 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902049 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857774 1 + 75148670 a i chlSab2.chr16 C 0 I 26 s manLeu1.NW_012106252v1 2081203 1 + 4244037 a i manLeu1.NW_012106252v1 C 0 I 27 s colAng1.NW_012122154v1 2109139 1 + 4569836 a i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1793342 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842236 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957054 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21389453 1 + 61074082 a i canFam3.chr9 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e otoGar3.GL873537 22777887 0 + 28711273 C e calJac3.chr5 46073026 1 - 159171411 I a score=35384.000000 s hg38.chr17_GL383564v2_alt 64549 3 + 133151 GAG s panTro5.chr17 16251135 3 + 83181570 GAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158607 3 + 83442489 GAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993644 3 + 4267968 GAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974038 3 - 2193130 GAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046083 3 - 77216781 GAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958692 3 - 80997621 GAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014941 3 + 10377808 GAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902050 3 - 8458610 GAG i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2081231 3 + 4244037 GAG i manLeu1.NW_012106252v1 I 27 C 0 s colAng1.NW_012122154v1 2109140 3 + 4569836 GAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46073027 3 - 159171411 GAG i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1793343 3 + 3513951 GAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842237 3 + 1920343 GAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957055 3 - 7032639 GAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22777887 3 + 28711273 GAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21389454 3 + 61074082 aAA i canFam3.chr9 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e chlSab2.chr16 64857775 26 + 75148670 I a score=23805.000000 s hg38.chr17_GL383564v2_alt 64552 7 + 133151 GGAAAGT s panTro5.chr17 16251138 7 + 83181570 GGAAAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158610 7 + 83442489 GGAAAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993647 7 + 4267968 GGAAAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974041 7 - 2193130 GGAAAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046086 5 - 77216781 -GAAAC- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958695 5 - 80997621 -GAAAC- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014944 5 + 10377808 -GAAAC- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902053 5 - 8458610 -GAAAC- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857801 6 + 75148670 GGAAAC- i chlSab2.chr16 I 26 C 0 s manLeu1.NW_012106252v1 2081234 5 + 4244037 -GAAAC- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109143 7 + 4569836 GGAAACT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46073030 7 - 159171411 AGAAAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1793346 7 + 3513951 AGAAAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842240 7 + 1920343 AGAAAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957058 7 - 7032639 AGAAAGT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22777890 7 + 28711273 GGAGAGT i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 361160 1963 - 852752 I e canFam3.chr9 21389457 0 + 61074082 C a score=3003291.000000 s hg38.chr17_GL383564v2_alt 64559 255 + 133151 TTTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATGAGGTGTGTTTAGAAATTGACAACCCAATCCCTAGCCTAGAACAGAGGGTAAGTGTGGTTATAGGAGATGAAACTG-CAAGGTAGTTAGGTACGGCCATATTT-GGAAGTGCTCCGAATGATTATACATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATATATCTGGCAGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA s panTro5.chr17 16251145 255 + 83181570 TTTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATGAGGTGTGTTTAGAAATTGACAACCCAATCCCTAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAGTTAGGTACGGCCATATTT-GGAAGTGCTCCGAATGATTATACATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATATATCTGGCAGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158617 255 + 83442489 TTTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATGAGGTGTGTTTAGAAATTGACAACCCAATCCCTAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAGTTAGGTACGGCCATATTT-GGAAGTGCTCCGAATGATTATACATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATATATCTGGCAGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993654 255 + 4267968 TTTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATGAGGTGTGTTTAGAAATTGACAACCCAATCCCTAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAGTTAGGTACGGCCATATTT-GGAAGTGCTCCGAATGATTATACATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATATACTTGACAGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974048 255 - 2193130 TTTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATGAGGTGTGTTTAGAAATTGACAACCCAATTCCTAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAAGTAGTTAGGTATGGCCATATTT-GGAAGTGCTCTGAATGATTATACATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATATATCCAGCAGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGGTGAAATAGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046091 254 - 77216781 -TTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATAAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAATCAGGTAGGAGCATGTTT-GGCAGTGCTCTGAATGATTATGCATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATGTGTCTGGCTGCTGTGTACGGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958700 254 - 80997621 -TTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATAAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAATCAGGTAGGAGCATGTTT-GGCAGTGCTCTGAATGATTATGCATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATGTGTCTGGCTGCTGTGTACGGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2014949 254 + 10377808 -TTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATAAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAATCAGGTAGGAGCATGTTT-GGCAGTGCTCTGAATGATTATGCATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATGTGTCTGGCTGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902058 254 - 8458610 -TTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATAAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAATCAGGTAGGAGCATGTTT-GGCAGTGCTCTGAATGATTATGCATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATGTGTCTGGCTGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64857807 254 + 75148670 -TTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATAAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAATTAGGTAGGAGCATGTTT-GGCAATGCTCTGAATGATTATGCATGAGATTTTCTTGTAAGGGAGTTTGCCATGTGATGTGTCTGGCTGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081239 254 + 4244037 -TTCCTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATAAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAATCAGGTAGGAGCATGTTT-GGCAGTGCTCTGAATGATTATGCATGAGATTTTCTTGTAAGGGAGTTTGCCATATGATGTGTCTGGCTGCTGTGTACAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109150 255 + 4569836 TTTCTTGAGCATGAACTTTGC--CTGG----------AGGAGTT-------ATGAGGTTTGTTTAGAAACTGACAACCCAATTCCCAGCCTAGAACAGAGGGTAAGTGTGGTAATAGGAGATGAAACTG-CAAGGTAGTTAGGTAGGAGCATGTTT-GGCAGTGCTCTGAACGATTATGCATGAAATTTTCTTGTAAGGGAGTTTGCCATATGATGTATCTGGCTACTGTGTATAGGTTGGGTTGTGAGGAGTCCTA---------GAA---------G--------CTGGATGAAATAGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46073037 254 - 159171411 TTTCCTGAGCGTGAACTTTGC--CTGG----------AGGAGTG-------ATGAGGTGTGTTTAGAAATTGACAACCCAATTCCCAGGCTAGAACAGA-GGTAAGGGTGGTAATAGAAGATGAAACTG-CAAGGTAGTTAGGTAGGACCATATCT-GGCAGTGCCCTGAATGATTACACACGAGGTTTTCTTATAAGGGAGGCTGCCATATGACATAGCTGGCAGCTGTGTACAGGTTGGGTGGTGAAGAGTCCTA---------GGA---------G--------CTCGGTGAGATAGAA i calJac3.chr5 C 0 I 1584 s saiBol1.JH378271 1793353 255 + 3513951 TTTCCTGAGGGTGAACTTTGC--CTGG----------AGGAGTG-------ATGAGGTGTGTTTAGAAATTGACAACCCAATTCCCAGGCTAGCACAGAGGGTAAAGGTGGTAACAGAAGATGAAACTG-CAAGGTAGTTAGGTAGGACCATATCT-AGCAGTGCACTGAATGATTACACATGAGGTTTTCTTATAAGGGAGGTTGCCGTATGACATAACTGGCAGCTGTGTACAGGTTGGGTTGTGAAGAGTCCTA---------GAA---------G--------CTCAGTGAGATAAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842247 254 + 1920343 TATCCTGAGCGTGAACTTTGC--CTGG----------AGGAGTG-------ACGAGGTGTGTTTAGAAATTGACAACCCAATTCCCAGGCTAGAACAGA-GGTAAGGGTGGTAATAGAAGATGAAACTG-CAAGGTAGTTAGGCAGGACCATATCT-GGCAGTGCCCTGAATGATTATGCATGAGGTTTTCTTATAAGGGAGGTTGCCATATGACATAGCTGGCAGCTGTGTACAGGTTGGGTTGTGAAGAGTCCTA---------GAA---------G--------CTCGGTGAGAGAGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957065 254 - 7032639 TTTCCTGAGCGTGAACTTTGC--CAGG----------AGGAGTG-------ATGAGGTGTGTTTAGAAATTGACAACCCAATTCCCAGGCTAGAACAGA-GGTAAGGGTGGTAATAGAAGATGAAACTG-CAAGGTAGTTAGGTAGGACCATATCT-GGCAGTGCCCTGAATGATTATGCATGAGGTTTTCTTATAAGGGAGGTTGCCGTACGACATAGCTGGCAGCTGTGTACAGGTTGGGTTGTGAAGAGTCCTA---------GAA---------G--------CTCGGTGAGCTAGAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22777897 273 + 28711273 TTTCTTGAGCATGAACTTTGC--CTGGTAAGGAGATAAGGAATC-------AGGAGGTGTGCTTAGAGAACTGCAGCCCAATTCCTAGACCAGAACAGAAGACAAATATGATAATAGAATATG-AACTG-AAAGGTAGTTAGGTAGGACTATATCT-GCCAGTGCTTTGAATGGTTATTCATGAGAGTTTCTTGCAAGGAAGGTGGCTATATGATATACCTGGCAACTGTGTACAGGCTGGTTGGTCAGGGGGCCTGTAAGTTGGTGGA---------G--------CTGGGTGAAATAGAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21389457 212 + 61074082 ----------GAAAAGTTTGTAGCTGG----------AG----------------------------------CAAAGCATTTCCC--------ACAGA----------AATGGTGGAAGATGAAACTG-CAAAGTAGTCATAGAGGACCATATCTGGGTGGTGCTTTTCATGGTTATCTGTGAGATTTGCTTGTAAGGAAGTTTGGCATATGATTTGTCGAGCAGCTATGTATAGGCTGGGTTGTGATGGGTCCTA---------GAAATTGGTGGGG--------TTGGATGGGAAAGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 363123 267 - 852752 TTTTCCAGGTACAAACTTTGC--CTGG--------TAAGGAGATGAGAAACAGGAAGTGTGTTT-GAGGCTGACAGC-CAATTCCTAGCCTGGAGCAGAGGATCTATATGATAGTGGAAGATGAAACTGCCAAGGTAGTTACGTGAGAGCGTATCT-GGCAGTGCTT----TGATTATCTGTGAGATTTTCTTGGAAGGAAGGTGGCTATATGAGACATCGGGAAGTTGTGTGTTGGATGCGTCCTGGTAGGTCCTA---------GAA---------GGTGGTGGATTGGATGAAATAGAA i dasNov3.JH570468 I 1963 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I a score=1019322.000000 s hg38.chr17_GL383564v2_alt 64814 111 + 133151 GGAAGATCAATTAAGAGG----TGAG------------AGACAATAAG---GACTGAGATAAGTGGAGGAGAGTGAGGCCAAAGAGGGGTAGGTTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA s panTro5.chr17 16251400 111 + 83181570 GGAAGATCAATTAAGAGG----TGAG------------AGACAATAAG---GACTGAGATAAGTGGAGGAGAGTGAGGCCAAAGAGGGGTAGGTTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158872 111 + 83442489 GGAAGATCAATTAAGAGG----TGAG------------AGACAATAAG---GACTGAGATAAGTGGAGGAGAGTGAGGCCAAAGAGGGGTAGGTTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3993909 111 + 4267968 GGAAGATCAATTAAGAGG----TGAG------------AGACAATAAG---GACTGAGATAAGTGGAGGAGAGTGAGGCCAAAGAGGGGTAGGTTTTAGAGGCGTGGCTTA-AATATGGAAGCTGAGTAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974303 111 - 2193130 GGAAGACCAGTTAGGAGG----TGAG------------GGACAATAAG---GACTGAGATAAGTGGAGGAGAGTGAGGCTGAAGAGGGGTAGATTTTAGAGGCATGGCTTA-AATATGGCAGCTGAGTAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046345 111 - 77216781 GGAAGATCAATTAGTAGG----TGAG------------AGACAATAAA---GACTGAGATAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27958954 111 - 80997621 GGAAGATCAATTAGTAGG----TGAG------------AGACAATAAA---GACTGAGATAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015203 111 + 10377808 GGAAGATCAATTAGTAGG----TGAG------------AGACAATAAA---GACTGAGATAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902312 111 - 8458610 GGAAGACCAATTAGTAGG----TGAG------------AGACAATAAA---GACTGAGATAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858061 111 + 75148670 GGAAGATCAATTAGTAGG----TGAG------------AGACAATAAA---GACTGAGATAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTCAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081493 111 + 4244037 GGAAGATCAATTAGTAGG----TGAG------------AGACAATAAA---GACTGAGATAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGGCTTA-AATATGGAAGCTGAGTAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109405 111 + 4569836 GGAAGATCAATTAGTAGG----TGAG------------AGACAATAAG---GACTGAGATAAGTGGACATGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCAAGGCTTA-AATATGGAAGCTGAGTAGA i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1793608 94 + 3513951 GGAAGAT----------------------------------CAGTAAG---GGTTGAGGTAAGTGGAGGTGAGTGAAGCAGAAGACGGGTAGATTTTAGAGGCATGGCCTAGAATATGGAAGCTGAGTAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842501 94 + 1920343 GAAAGAT----------------------------------CAATAAG---AATTGAGGTAGGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGGCCTAGAATACGGAAGTTGAGTAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957319 94 - 7032639 GGAAGAT----------------------------------CAATAGG---GATTGAGGTAAGTGGAGGTGAGTGAGGCAGAAGAGGGGTAGATTTTAGAGGCATGACCTAGAATATGGAAGCTGAGTAGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778170 111 + 28711273 AGCAGATCAATTAGGAGG----TGAG------------TGACAATA-G---CACTGAGATGGGTGGAGTTGGTCGGGGCAGAGGAAAGGAGGATTTTAGAATCATGACCCAGGATACGGAAGCTGATTAGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21389669 111 + 61074082 GGAAGAACAGTTGGGAGGCTGATGAG------------AGACAATAGGACTGACTGAGATGGGGGGAGAGTGGAGGGCCCAGGGAGGGGTAGATTTCAG--------CCCAGGATGTGGAAACTGATTAGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 363390 122 - 852752 AGGAGGTCAGTTAGGAGG----TGAGTGGGAGAAAACAAGACAACATG---GGTGGAAGTGGGGGGAGG-GGGTGGAGTTGAGGTGGGG-ATATATTTAAGGCAGGGCCTGGCATGTGGAAGCTGACGAGA i dasNov3.JH570468 C 0 I 852 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e calJac3.chr5 46073291 1584 - 159171411 I a score=541907.000000 s hg38.chr17_GL383564v2_alt 64925 51 + 133151 GATAGAGGAACAATGGAAAGAAAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC s panTro5.chr17 16251511 51 + 83181570 GATAGAGGAACAATGGAAAGAAAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16158983 51 + 83442489 GATAGAGGAACAATGGAAAGAAAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994020 51 + 4267968 GATAGAGGAACAATGGAAAGAAAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974414 51 - 2193130 GGTAGAGGAACAATGGAAAGAAAAGGAAG---------------GAA-------------------ACTAGTACTGATTACACAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046456 51 - 77216781 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959065 51 - 80997621 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015314 51 + 10377808 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902423 51 - 8458610 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858172 51 + 75148670 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGTACTGATCACACAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081604 51 + 4244037 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGCACTGATCACACAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109516 51 + 4569836 GGTAGAGGAACAATGGAAAGAGAAGGAAG---------------GAA-------------------ACTAGTACCCATCACACAC i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1793702 51 + 3513951 GGCAGAGGAACAATGGAGAGAGAAGAAAG---------------GAA-------------------ACTAGTATTGATCACACAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842595 51 + 1920343 GGCAGAGGAACAATGGAGAGAGAAGAAAG---------------GAA-------------------ACTAATACTGATCACACAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957413 51 - 7032639 GGTAGAGGAACAACGGAGAGAGAAGAAAG---------------GAA-------------------ACTAATACTGATCACACGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778281 85 + 28711273 GGAAGAGGAACAAGGGAGAGAGAACAGAGTACAGAAGTACACTAGAAGATCAAATAGTACTAGTACACTAGTACTAATCAAATGC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21389780 51 + 61074082 AATAGAGGAACAATGGAGAGAGAAGGAAA---------------GAA-------------------ACTAGTACTGATTGAATAC i canFam3.chr9 C 0 I 971 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e calJac3.chr5 46073291 1584 - 159171411 I a score=266992.000000 s hg38.chr17_GL383564v2_alt 64976 32 + 133151 tgtatt----agggttatccagagaaacagaaacag s panTro5.chr17 16251562 32 + 83181570 tgtatt----agggttatccagaaaaacagaaacag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159034 32 + 83442489 tgtatt----agggttatccagaaaaacagaaacag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994071 32 + 4267968 tgtatt----agggttatccagagaaacagaaacag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974465 32 - 2193130 tgtatt----agggttatccagagaaacagaaacag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046507 36 - 77216781 tgtattagtcagggttgtccagagaaatagaaacag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959116 36 - 80997621 tgtattagtcagggttgtccagagaaatagaaacag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015365 36 + 10377808 tgtattagtcagggttgtccagagaaatagaaacag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902474 36 - 8458610 tgtattagtcagggttgtccagagaaatagaaacag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858223 36 + 75148670 tgtattagtcagggttgtccagaaaaatagaaacag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081655 36 + 4244037 tgtattagtcagggttgtccagagaaatagaaacag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109567 36 + 4569836 tgtattagtcagggttgtccagagaaacagaaacag i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1793753 35 + 3513951 TG-attagtcagggttgtccaaagagacagaaacaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842646 35 + 1920343 TG-attagtcagggttgtcccaagagacagaaacaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957464 36 - 7032639 tgtattattccgggttgtccaaagagacagaaacaa i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778366 30 + 28711273 T--ATT----ACTgttcttcagagaaacagaatcaa i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22047900 295 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21389831 971 + 61074082 I e calJac3.chr5 46073291 1584 - 159171411 I a score=195264.000000 s hg38.chr17_GL383564v2_alt 65008 20 + 133151 tagg------ctatgtatagatacat s panTro5.chr17 16251594 20 + 83181570 tagg------ctatgtatagatacat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159066 20 + 83442489 tagg------ctatgtatagatacat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994103 20 + 4267968 tagg------ctatctatagatacat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974497 20 - 2193130 tagg------ctatatatagatacat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046543 20 - 77216781 tagg------ctatatatagatacac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959152 20 - 80997621 tagg------ctatatatagatacac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015401 20 + 10377808 tagg------ctatatatagatacac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902510 20 - 8458610 tagg------ctatatatagatacac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858259 20 + 75148670 tagg------ctatatatagatacac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081691 20 + 4244037 tagg------ctatatatagatacac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109603 20 + 4569836 tagg------ctatatatagatacac i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1793788 20 + 3513951 tagg------ctatatagagatatat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842681 20 + 1920343 tagg------ctatatagagatacat i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957500 20 - 7032639 tagg------ctatatagagatacat i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778396 26 + 28711273 taggccgtacctgtatacggatacgt i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22048195 20 - 122082543 taag------acacagatagatatat i mm10.chr11 I 295 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21389831 971 + 61074082 I e calJac3.chr5 46073291 1584 - 159171411 I a score=2606704.000000 s hg38.chr17_GL383564v2_alt 65028 233 + 133151 agaaagagatttattataaggaattagcttatatgattatggaggctgagaagtttcataatctgctgtcttcaaggtggaggcccaggaaagccagtggtataattccaatccaaacccaaaggactgagaatcaggaaggctggtggtgtaagtcctggtttgagactgaaggctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaa s panTro5.chr17 16251614 233 + 83181570 agaaagagatttattatgaggaattagcttatatgattatggaggctgagaagtttcataatctgctgtcttcaaggtggaggcccaggaaagccagtggtataattccaatccaaacccaaaggactgagaatcaggaaggctggtggtgtaagtcctggtttgagactgaaggctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagttcaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159086 233 + 83442489 agaaagagatttattatgaggaattagcttatatgattatggaggctgagaagtttcataatctgctgtcttcaaggtggaggcccaggaaagccagtggtataattccaatccaaacccaaaggactgagaatcaggaaggctggtggtgtaagtcctggtttgagactgaaggctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagttcaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994123 233 + 4267968 agaaagagatttattatgaggaattagcttatatgattatggaggctgagaagtttcataatctgctgtcttcaaggtggatgcccaggaaagccagtggtatagttccaatccaaacccaaaggacagagaatcaggaaggatggtggtgtaagtcctggtttgagactgaaggctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974517 233 - 2193130 agaaagaggtttattatgaggaattagcttatatgattatggaggccgagaagtctcataatctgctttcttcaagttggaggcccaggaaagccagtggtgtagttccaatccaaacccaaaggactgagaatcaggaaggctgatggtgtaagtcctggtttgagactgaaggctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046563 233 - 77216781 agaaaaagatttattatgaggaattagctcatgtgattatggaggctgagaagtcccacaatctgctgtcttcaaggtggaggcccaggaaagccagtggtatagttccaatccaaacccaaaggactgagaatcaggaaggctgatggtgtgagtcctggtttgagactgaagcctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959172 233 - 80997621 agaaaaagatttattatgaggaattagctcatgtgattatggaggctgagaagtcccacaatctgctgtcttcaaggtggaggcccaggaaagccagtggtatagttccaatccaaacccaaaggactgagaatcaggaaggctgatggtgtgagtcctggtttgagactgaagcctcaagaactgggagcattgatgttagagggcaggaaaagatggatgtcccagctcaG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015421 233 + 10377808 agaaaaagatttattatgaggaattagctcatgtgattatggaggctgagaagtcccacaatctgctgtcttcaaggtggaggcccaggaaagccagtggtatagttccaatccaaacccaaaggactgagaatcaggaaggctgatggtgtgagtcctggtttgagactgaagcctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902530 233 - 8458610 agaaaaagatttattatgaggaattagctcatgtgattatggaggctgagaagtcccacaatctgctgtcttcaaggtggaggcccaggaaagccagtggtatagttccaatccaaacccaaaggactgagaatcaagaaggctgatggtgtgagtcctggtttgagactgaagcctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858279 233 + 75148670 agaaaaagatttattatgagggattagctcatgtgattatggaggctgagaagtcccataatctgttgtcttcaaggtggaggcccaggaaagccagtggtatagttccaatccaaacccaaaggactgagaaacaggaaggctgatggtgtgagtcctggtttgagactgaagcctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081711 233 + 4244037 agaaaaagatttattatgaggaattagctcatgtgattatggaggctgagaagtcccacaatctgctgtcttcaaggtggaggcccaggaaagccagtggtatagttccaatccaaacccaaaggactgagaatcaggaaggctgatggtgtgagtcctggtttgagactgaagcctcaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109623 233 + 4569836 agaaaaagatttattatgaggaattagctcatgtgattatggaggctgagaagtcccataatctgctgtcttcaaggtggaggcccaggaaagccagtggtatagttctaatccaaacccaaaggactgagaatcaggaaggctgatggtgtgagtcctggtttgagactgaagccttaagaactgggagcattgatgttagagggcaggagaagatggatgtcccagctcaG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46074875 230 - 159171411 aaaaaaagatttattatgagaaaacagctcagatg-ttgtggaggccaaaaagtccaataatctgctgtcttcaaggtggaggcccagcaaagccagtggtgtagttccaatccaaaccaaaaggacggagaatcaggaaggctgctggtgtaagtcctggtttgaaa-tgaaggctcaagaactgggagcatcgatgttagagggcaggaga-gatggatgtcccagctcaa i calJac3.chr5 I 1584 C 0 s saiBol1.JH378271 1793808 224 + 3513951 agaaagagatttattatgagaaaatagcttagatg-ttgtggaggccaaaaagtccaatcatctgctgtcttcaaggtggaggcccagcaaagccagtggtgtagttccaatccaaaccgaaaggacggagaatcaggaaggctgctggtctaagtcctggtttgaga-tgaagcctcaagaactgggagcattgatgttagagggcaggagacgatgg-------aGCTCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842701 224 + 1920343 agaaagagatttattatgagaaaatagctcagatg-ttgtggagactaaaaagtccaataatctgctgtcttcaaggtggaggcccagcaaagctaggggtgtagttccaatccaagccaaaaggtcggagaatcaggaaggctgctggtgtaagtcctggtttgaga-tgaaggctcaagagctgggagcattgatgttagagggcaggagacgatgg-------agctcaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957520 230 - 7032639 agaaagaga-taattatgagaaaatagctcagatg-ttgtggaggccaaaaactccaataatctgctgtcttcaaggtggaggcccagcaaagtcagtggtgtagttccaatccaaaccaaaaggacggagagtcaggaaggctgctggtgtaagtcctggtttgcaa-tgaaggctcaagaactgggagcatcgatgttagagggcaggagacgatggatgtcccagctcaa i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778422 233 + 28711273 agaaagagatttactatgaggaatttgttcatgcaattatggaagctgaggagtctcacaatgtactgtcttcaagagggagatccaggaaaactgatggcatagttttaatctaagcccaaaggaccagtaatcagggggactgctggtgtaagtcctggcccaagtctgaagtctcaagaaccagtagtactgatgtcacagggaaggagaagatggatatcctagctcaa i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22048215 204 - 122082543 agaaaaaaa-ttgttatgcaggattggctcatattgttatggagattgagaaat-------tctgtgatcttcaagttgattgcccaggaaaggcaatcatgtagctccattctcagcccaaaggcttgagaatcaagagagctgatggaacaggtcaaggtt---------------aaaaggtagaa------atgtctgaagttaggattagactggtagcctagctcaa i mm10.chr11 C 0 I 29 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21389831 971 + 61074082 I a score=48577.000000 s hg38.chr17_GL383564v2_alt 65261 5 + 133151 CTCTA s panTro5.chr17 16251847 5 + 83181570 CTCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159319 5 + 83442489 CTCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994356 5 + 4267968 CTCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974750 5 - 2193130 CTCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046796 5 - 77216781 CTCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959405 5 - 80997621 CTCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015654 5 + 10377808 CTCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902763 5 - 8458610 CTCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858512 5 + 75148670 CTCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081944 5 + 4244037 CTCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109856 5 + 4569836 CTCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075105 5 - 159171411 CTCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794032 5 + 3513951 CTCTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842925 5 + 1920343 ctcCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957750 5 - 7032639 CTCCA i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22048448 5 - 122082543 tatta i mm10.chr11 I 29 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21389831 971 + 61074082 I e otoGar3.GL873537 22778655 0 + 28711273 C a score=101188.000000 s hg38.chr17_GL383564v2_alt 65266 8 + 133151 TTCCCATT s panTro5.chr17 16251852 8 + 83181570 TTCCCATT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159324 8 + 83442489 TTCCCATT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994361 8 + 4267968 TTCCCATT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974755 8 - 2193130 TTCCCATT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046801 8 - 77216781 TTCTCATT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959410 8 - 80997621 TTCTCATT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015659 8 + 10377808 TTCTCATT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902768 8 - 8458610 TTCTCATT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858517 8 + 75148670 TTCTCATT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081949 8 + 4244037 TTCTCATT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109861 8 + 4569836 TTCTCATT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075110 8 - 159171411 TTCTCACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794037 8 + 3513951 TTCTCATT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842930 8 + 1920343 TTCTCATT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957755 8 - 7032639 TTCTCATT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22048453 8 - 122082543 ttctcatt i mm10.chr11 C 0 I 412 s canFam3.chr9 21390802 8 + 61074082 TTCCTATT i canFam3.chr9 I 971 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e otoGar3.GL873537 22778655 0 + 28711273 C a score=1771060.000000 s hg38.chr17_GL383564v2_alt 65274 165 + 133151 GGGAGTGCAGGACTGAGTGTAAGAGAAACAGTGATGGCTCTGGAGAGGGTT--TGTGGAACTAGATCCCGAGTTCCGTTTTGAGGTGTCCGTGTCTGTCTTTGCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTACCGG s panTro5.chr17 16251860 165 + 83181570 GGGAGTGTAGGACTGAGTGTAAGAGAAACAATGATGGCTCTGGAGAGGGTT--TGTGGAACTAGATCCCGAGTTCCGTTTTGAGGTGTCTGTGTCTGTCTTTGCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTACCGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159332 165 + 83442489 GGGAGTGTAGGACTGAGTGTAAGAGAAACAATGATGGCTCTGGAGAGGGTT--TGTGGAACTAGATCCCGAGTTCCGTTTTGAGGTGTCTGTGTCTGTCTTTGCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTACCGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994369 165 + 4267968 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGATGGCTCTGGAGAGGGTT--TGTGGAACTAGACCCCGAGTTCCGTTTTGAGGTGTCTGTGTCTGTCTTTGCTCAGCGTAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAcagg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974763 165 - 2193130 GGGAGTGCAGGGCTGAGTGTAAGAGAAACAATGATGGCTCTGGAGAGGGTT--TGTGGAACTAGACCCTGAGTTCCGCTTTGAGGTGTCCGTATCTGTCTTTGCTCAGCGTAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAcagg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046809 165 - 77216781 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACGGCTCTGGAGAGGGTT--TGTGGAACTAGCCCCTGAGTTCCATTTTGAGGTGCCTGTATCTGTTTTTTCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959418 165 - 80997621 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACGGCTCTGGAGAGGGTT--TGTGGAACTAGCCCCTGAGTTCCATTTTGAGGTGCCTGTATCTGTTTTTTCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015667 165 + 10377808 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACGGCTCTGGAGAGGGTT--TGTGGAACTAGCCCCTGAGTTCCATTTTGAGGTGCCTGTATCTGTTTTTTCTCAGCATAGCTTGCTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902776 165 - 8458610 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACGGCTCTGGAGAGGGTT--TGTGGAACTAGCCCCTGAGTTCCATTTTGAGGTGCCTGTATCTGTTTTTTCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858525 165 + 75148670 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACAGCTCTGGAGAGGGTT--TGTGGAACTAGCCCCTCAGTTCCATTTTGAAGTGTCTGTATCTGTTTTTTCTCAGCATAGCTTGCTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2081957 165 + 4244037 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACGGCTCTGGAGAGAGTT--TGTGGAACTAGCCCCTGAGTTCCATTTTGAGGTGCCTGTATCTGTTTTTTCTCAGCATAGCTTACTACTGACCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2109869 163 + 4569836 GGGAGTGCAGGACTGAGTGTAAGAGAAACAATGACGGCTCTGGAGAGGGTT--TGTGGAACTAGCCC--GAGTTCCATTTTGAGGTGTCTGTATCTGTCTTTGCTCAGCATAGCTTACTACTGATCTGGCCTATTCTCCAGACCCTCTCCTGCTTCTCCCTTAAGGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075118 165 - 159171411 GGGATGGCAGCACTGAGTGTAGGAGAAACAATGACAACTCTGGGGAAAGTT--TGAGGAACCAGCCCCTGAGTTCCATTTTGAGGTGTCTGTATTTGTTTTTGCTCAGCATAGCTTACTACTGACCTGGCTTATTCTCCAGACCCTCTCCTGCTTGTCCCTTAcagg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794045 164 + 3513951 GGGAGTGCAGGACCGAGTGT-GGAGAAACAGTGACAACTCTGGGGAAGGTT--TGTGGAACTAGCCCCTGAGTTCCATTTTGAGGTGTCTGTATTTGTCTTTACTCAGCATAGCTTACTACTGACCTGGCTTATTCTCCAGACCATCTCCTGCTTGTCCCTTAcagg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1842938 163 + 1920343 GGGAGTGCAGGACCGAGTGT-GGAGAAACAGTGACAGCTCT-GGGAAGGTC--TGTGGAACTAGCCCCTGGGTTCCATTTTGAGGTGTCTGTATTTGTCTTTGCTCAGCATAGCTTACTACTGACCTGGCTTATTCTCCAGACCATCTCCTGCTTGTCCCTTAcagg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957763 167 - 7032639 GGGAGTGCAGGACTGAGTGTAGGAGAAACAGTGACAACTCTGGGGAAGGTTTATGTGGAACTAGCCCCTGAGCTCCATTTTGAGGTGTCTGTATCTGTCTTTGCTCAGCATAGCTTACTACTGACCTGGCTTATTCTCCAGACCTTCTCCTGCTTGTCCCTTAcagg i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21390810 163 + 61074082 GGGAGTTGAAGACCGAATATAAGAGAAACAATGACAGCTCTGGAGAGGATT--TGCGT-ACTGGGCTCTGAATTCTATTTTAGGGTG-CTGTACTTCTCTTTGCCCAGCCAACATTACTACTGACCTGGCTTATTCTTCATGTACTCCCCTGCTTGTCCCTCACTGG i canFam3.chr9 C 0 T 1119 e mm10.chr11 22048461 412 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e otoGar3.GL873537 22778655 0 + 28711273 C a score=2540792.000000 s hg38.chr17_GL383564v2_alt 65439 239 + 133151 TCAAT--gagagaaataatttgcctttcttctactttttggttctatttga---ctacccacattggaggacacctgcccacattggtgagggtga---tctttactcactctcctgattcaaatgct----gatctcttttagaaacacctttacacacatacccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT s panTro5.chr17 16252025 239 + 83181570 TCAAT--gagagaaataatttgcctttcttctaccttttggttctatttga---ctacccacattggaggacacttgcccacattagtgagggtga---tctttactcactctcctgattcaaatgct----gatctcttttagaaacacctttacacacatacccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159497 239 + 83442489 TCAAT--gagagaaataatttgcctttcttctaccttttggttctatttga---ctacccacattggaggacacttgcccacattagtgagggtga---tctttactcactctcctgattcaaatgct----gatctcttttagaaacacctttacacacatacccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994534 239 + 4267968 tcaat--gagagaaataatttgcctttcttctaccttttggttctatttga---ctacccacattggaggacacctgcccacattggtgagggtga---tctttactcactctcctgattcaaacgct----gatctcttttagaaacacctttacacacatacccagaaataatgttttaccagctatcttggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1974928 241 - 2193130 tcaataagagagaaataatttgcctttcttctaccttttggttctatttga---ctacccacattggaggacacctgcccacattggtgagggtga---tctttactcactctcctgattcaaatgct----gatctcttttataaacacctttacacacatacccataaatgatgttttaccagctatctgggcgtcccctggcccagtcaagttgatacattaaattaactatcacaAACACCTACTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30046974 241 - 77216781 tcaataagagataaataatttgcctttcttttgccttttagttctatttga---ctacccacattagaggacacctgcccacattggtgagggtga---tctttactcactcttctgattcaaatgct----gatctcttttagaaacagcttcacagacataaccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959583 241 - 80997621 tcaataagagataaataatttgcctttcttttgccttttagttctatttga---ctacccacattagaggacacctgcccacattggtgagggtga---tctttacacactcttctgattcaaatgct----gatctcttttagaaacaccttcacagacataaccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2015832 241 + 10377808 tcaataagagataaataatttgcctttcttttgccttttagttctatttga---ctacccacattagaggacacctgcccacattggtgagggtga---tctttactcactcttctgattcaaatgct----gatctcttttagaaacaccttcacagacataaccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1902941 241 - 8458610 tcagtaggagataaataatttgcctttcttttgccttttagttctatttga---ctacccacattagaggacacctgcccacattggtgagggtga---tctttactcactcttctgattcaaatgct----gatctcttttagaaacaccttcacagacataaccagaaataatgttttaccagctatctgggcatcccttggcccagtcaatttgatacattaaattaaccatcacaAACACCTACTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858690 241 + 75148670 tcagtaagagataaataatttgcctttcttttgccttttagttctatttga---ctacccacattggaggacacctgcccacattggtgagggtga---tctttactcactcttctgattcaaatgct----gatctcttttagaaacaccttcacagacatacccagaaataatgttttaccagctatcttggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082122 241 + 4244037 TCAGTAGGCGATAAATaatttgcctttcttttgccttttagttctatttga---ctacccacattagaggacacctgcccacattggtgagggtga---tctttactcactcttctgattcaaatgct----gatctcttttagaaacaccttcacagacataaccagaaataatgttttaccagctatctgggcatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110032 242 + 4569836 TCAGTAagag--aaataatttgcctttcttctgccttttggttctatttga---ctacccacattggaggacacctgcccaccctggtgagagtga---tcttta-tcactcttctgattcaaatacttcaatgtttcttttagaaacaccttcacagacatacccagaaataatgttttaccagctgtctggacatcccttggcccagtcaagttgatacattaaattaaccatcacaAACACCTACTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075283 241 - 159171411 tcaataagagagaaataatttgcctttcgcctatcttttggttctatttga---ctacccatgttggaggacacctgcccacattgggaagggtga---tctttactcactctacttaatcaaatgct----agtttcttttaaagacaccttcacagacatacccagaaataatgttttaccagctatctgggcaacccttggtgcagtgaagttgatacattaaattaacagtcacaGATACCTACTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794209 241 + 3513951 ccaataaaagagaaataatttgcctttcttctatcttttggttctatttga---ctacccatgttggaggatacctgcccacactggggaggatga---tctttactcactctcctgaatcaaatgct----gctctcttttaaagacaccttcacaggcatacccagaaataacgttttaccagctatctgggcttcccttggcccagtgaagttgatacattaaattaacagtcacaAATACCTACTAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843101 241 + 1920343 tcaataagagagaaataatttgcctttcttctatccttaggttctatttga---ctacccatgttggaggacacctgcccacattggggagggtga---tctttactcactctcctgaatcaaatgct----ggtctcttttaaagacaccttcacagacatacccagaaatcatgttttaccagctatctgggcatcccttggcccagtgaagttgatacattaaattaacagtcacaAATACCTACTAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6957930 241 - 7032639 tcaataagagagaaataatttgcctttcttctatcttttggttctgtttga---ctacccatgctggaggacatctgcccacattggggagggtga---tctttactcactctcctgaatcaaatgct----ggtctcttttaaagacaccttcacagacatacccagaaataatgttttaccagctctctgggcatcccttggcccagtgaatttgatacattaaattaacagtcacaGATACCTACTAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778655 237 + 28711273 ----tgagagaggaagaatttgcccttcttctgcctttttattctatctgggccctcaacagactggatagcatccacttatgctggtgagaatcattgtcattactcagtctacagatacaaatact----aatctcttccagaaacaccctcatggacacagtcagaaataatattttaccagatgtctggagaccccttagcccagtcaagttgacacataaaatta------acaaacacCAACCAT i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22048461 412 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390973 1119 + 61074082 T a score=83181.000000 s hg38.chr17_GL383564v2_alt 65678 6 + 133151 GGGTCT s panTro5.chr17 16252264 6 + 83181570 GGGTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159736 6 + 83442489 GGGTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994773 6 + 4267968 GGGTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975169 6 - 2193130 GGGTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047215 6 - 77216781 GGGTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959824 6 - 80997621 GGGTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016073 6 + 10377808 GGGTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903182 6 - 8458610 GGGTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858931 6 + 75148670 GGGTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082363 6 + 4244037 GGGTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110274 6 + 4569836 GGGTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075524 6 - 159171411 GGGTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794450 6 + 3513951 GGGTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843342 6 + 1920343 GTGTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958171 6 - 7032639 GGGTCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778892 6 + 28711273 GGGTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22048873 6 - 122082543 GGATCT i mm10.chr11 I 412 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390973 1119 + 61074082 T a score=3115283.000000 s hg38.chr17_GL383564v2_alt 65684 276 + 133151 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTTTCCATTGGAGAGACCTGGAGAAGAATAACTAGATTTGAGGGAG--ATGTCGGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATAGGAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGAATAGAAGAACCTTGAGGACCACTGATAGAAACCACAGACTTCAGCTGGGGCTCTCCAGAGTCCCTGATGTGAGGTTCAGCCTTGG-TTTTG-CCAGATCTTGAGGACAGAGATGAC s panTro5.chr17 16252270 276 + 83181570 GAAGATTTTCAGCCTGAGAAAACGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATAACTAGATTTGAGGGAG--ATGTCGGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATAGGAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGAATAGAAGAACCTTGAGGACCACTGATAGAAACCACAGAGTTCAGCTGGGGCTCTCCAAAGTCCCTGATGTGAGGTTCAGCCTTGG-TTTTG-CCAGATCTTGAGGACAGAGATGAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16159742 276 + 83442489 GAAGATTTTCAGCCTGAGAAAACGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATAACTAGATTTGAGGGAG--ATGTCGGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATAGGAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGAATAGAAGAACCTTGAGGACCACTGATAGAAACCACAGAGTTCAGCTGGGGCTCTCCAAAGTCCCTGATGTGAGGTTCAGCCTTGG-TTTTG-CCAGATCTTGAGGACAGAGATGAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3994779 276 + 4267968 GAAGATTTTCAGCCTGAGAAAATGAAACAACGATGAGTCTCCATTGGAGAGACCTGGAGAAGAATAACTAGATTTGAGGGAG--ATGTCGGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATAGGAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGAATAGAAGAACCTTGAGGACCACTGATAGAAACCACAGAGTTCAGCTGGGGCTCTCCAAAGTCCCTGACGTGAGGTTCAGCCTTGG-TTTTG-CCAGATCTTGAGGACAGAGATGAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975175 254 - 2193130 Gaagattttcagcctgagaaaatggaacaacaatgagtctccattggagggacctggagaagaatgtctagatttgagggag--aTGTTGGAGAGCTGGGTAAATA---ATGAT-AATT-------------------AGCCTCTCCAATGGAGGCTAGCAGGGAATAGAAGAACCTTGAGGACCACTGATAGAAACCACAGAGTTGAGCTGGGGCTCTCCAAAGTCCCTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047221 276 - 77216781 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATGACTAGATATGAGGGAG--ATGTCAGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATATCAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGCATAGAAGAACCTTGAGGACCAGTGATAGAAACTGTAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27959830 276 - 80997621 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATGACTAGATATGAGGGAG--ATGTCAGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATATCAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGCATAGAAGAACCTTGAGGACCAGTGATAGAAACCATAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016079 276 + 10377808 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATGACTAGATATGAGGGAG--ATGTCAGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATATCAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGCATAGAAGAACCTTGAGGACCAGTGATAGAAACCATAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903188 276 - 8458610 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATGACTAGATATAAGGAAG--ATGTCAGAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATATCAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGCATAGAAGAACCTTGAGGACCAGTGATAGAAACCATAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64858937 276 + 75148670 GAAGATTTTCAGCCTGAGAAAATGAAACAGCAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATAACTAGATATGAGGGAG--ATGTCAGAGAGCTGGGTAAACAAAGATGAT-AATTAGAGCTATATCAGTTGTTAAGACTGTCCAATGGAGGCTAGCAGGGCATAGAAGAACCTTGAGGACCAGTGATAGAAACCATAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082369 276 + 4244037 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCATTGGAGAGACCTGGAGAAGAATGACTAGATATGAGGGAG--ATGTCAGAGAGCTGGGTAAATAAAGACGAT-AATTAGAGCTATATCAATTGTTAAGACTGTCCAAAGGAGGCTAGCAGGGCATAGAAGAACCTTGAGGACCAGTGATAGAAACCATAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110280 276 + 4569836 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCGTTGGAGAGACCTGGAGAAGAATGACTAGATATAAGGGAG--ATGTCAAAGAGCTGGGTAAATAAAGATGAT-AATTAGAGCTATAGGAATTGTTAAGACTGTCCAATGGAGGCTAGCAGGGTATAGAAGAACCTTGAGGAGCAATGATAGAAACCATAGAGTTGACCTGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGC-TTTTG-CCAGATCTTGAGGACAGAGATGAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075530 277 - 159171411 GGAGATTTTCAGCCTGAGAAAATGAAACAACGATGAGTCTCCTTTGGAAAGACCTGGAAAACAATGACTAGATTTGAGAGAGAGATGTCAGACAGCCAGGTAAACAAAAATGAT-AATTAGAGCTATAGAAATTGTTAAGACTGTCCAGTGGAGGCTAGCTGGGTACAGCAAAA-TTTGAGGACCACTGGTAGAAACCACAGAGTTGACTGCGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGG-TTTTG-CCAGATCTTGAGGACTGAGATGAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794456 278 + 3513951 GAAGATTTTCAGCCTGAGAAAACGAAACAACAATGAGTCTCCATTGGAAAGACCTGGAAAAGAATGACTAGATTTGAGAGAGAGATGTCAGACAGCTAGGTGAACAAAGATGAT-AATTAGAGCTATAGAAATTGTTAAGACTGTCCAATGGAGGTTAGCTGGGTACAGAAGAA-TTTGAGGACCACTGATAGAAACCACAGAGTTGACTGGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTCGGTTTTTG-CCAGATCTTGAGGACTGAGATGAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843348 277 + 1920343 GAAGATTTTCAGCCTGAGAAAATGAAACAACAATGAGTCTCCATTGGAAAGACCTGGAAAAGAATGACTAGATTTGAGAGAGAGATGTCAGACAGCTAGGTAAACAAAGATGAT-AATTAGAGCTATAGAAATTGTTAA-ACTGTCCAATGGCAGTTGGCTGGATACAGAAGAA-TTTGAGGACCACTGATAGAAACCACAGAGTTGACTGGGGGCTCTCCAAAGTCCTTGATGTGAGGTTCAGCCTTGGTTTTTG-CCAGATCTTGAGGACTGAGATGAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958177 275 - 7032639 GAAGATTTTCAGCCTGAGAAGATGAAACAACAATGAGTCTCCATTGGAAAGACCTGGAAAAGAATGACTAGATTTGAGAGAGATATGTCAGACAGCTAGGTAAACAAAGATCAT-AATTAGAGCTATAGAAATTGTTAAGACTGTCCAATGGAGGCTAGCTGGGTA---AAGAA-TTTGAGGACCACTGATAGAACCCACAGAGTTGACTGGGAGCTCTCCAAAGTCCTTGATATGAGGTTCAGCCTTGGTTTTTG-CCAGATCTTGAGGACTGAGATGAC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22778898 259 + 28711273 GAAGTTTTTGAGCCTGAGACAATAAAACAG---TGGGTCTCCATTAGAGAGAGCTGGAGAAGAG-GACTGAATTTGAGAGAG--ATGTCAGCGAGTTAACCTGATAAACATGAT-TGTTAGTGCTGTCGGAGTGGTTAAGACTGCC--ACGGAAG----------ATGATTGAACCTTGGGGATCACTGAGAGAAATGACAGAGCTAATCTAGGGCTCTCCAAAGTCTCTGATATGAGATTCAGTCCTGG-TTTT--CCAGGTCTTGAGGATAGAGATGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22048879 227 - 122082543 GAAGTTTTGGGGCTTTCTGAAATGAAACAATGCTAA--------TAAAGAGATCTTCAAAAGAATGGCTGCTT-----------GTGTTGGAGAGTTCTTTAAGTAAGCGTTGT-AGCTAGAGATGTATTA---GTTAAGACCACTGGAAGGAAGCTGAAAGAGTACACAAGAGCCTTGGGGACTGCTGACAGAAATGACAGAGCTGACGTGGTGTGCTTCAACATCCCCGACATGAGG------------TCTC----------TGAGGAC--------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21389854 273 + 61074082 GATGTTTTTGAGCCTGAGAAG-TGAAACACCAGTGGGGCTCCAGTGGAGAGAGCTAGAAGAGAATGACTGGATTTGAGAGAG--ATGTCAGGGAGTTACCTAAGCAGAGATGATCCATTAGAGCTGTAGGAGATGTTAAGACTGTCAAGAGGGATGATGTTAGACTAGGGATAACCTTGGGAACCACTGGGAGAAATGACAGAG----CCTTAGCCTCTCCAAAGTCCCTGACATGAGGTGCCTTCTTGG-TTTGGCCCAGTCCTCAAGGAGAGAGGTGAT i canFam3.chr9 T 1119 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I a score=26942.000000 s hg38.chr17_GL383564v2_alt 65960 4 + 133151 ATCT s panTro5.chr17 16252546 4 + 83181570 ATCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160018 4 + 83442489 ATCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995055 4 + 4267968 ATCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975429 1 - 2193130 A--- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047497 4 - 77216781 ATCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960106 4 - 80997621 ATCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016355 4 + 10377808 ATCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903464 4 - 8458610 ATCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859213 4 + 75148670 ATCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082645 4 + 4244037 ATCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110556 4 + 4569836 ATCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075807 4 - 159171411 ATCT i calJac3.chr5 C 0 C 0 s otoGar3.GL873537 22779157 4 + 28711273 CTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22049106 4 - 122082543 ACCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21390127 4 + 61074082 ACCT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C a score=650098.000000 s hg38.chr17_GL383564v2_alt 65964 98 + 133151 GGTTGCAAGCAGTTTGAGAGGGAAGTGGAGAAGCACCTTAAAGGACACAGAAGTCAAAAGA-AGTTGGAGCTCTAATGAAAGAGTTG-TCAACAGCATCC s panTro5.chr17 16252550 98 + 83181570 GGTTGCAAGCAGTTTGAGAGGGAAGTGGAGAAGCACCTTAAAGGACACAGAAATCAAAAGA-AGTTGGAGCTCTAATGAAAGAGTTG-TCAACAGCATCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160022 98 + 83442489 GGTTGCAAGCAGTTTGAGAGGGAAGTGGAGAAGCACCTTAAAGGACACAGAAATCAAAAGA-AGTTGGAGCTCTAATGAAAGAGTTG-TCAACAGCATCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995059 98 + 4267968 GGTTGCAAGCAGTTTGAGAGGGAAGTGGATAAGCACCTTAAAGGACACAGAAGTCAAAAGA-AGTTGGAGCTCTAATGAAAGAGTTG-TCAACAGCATCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975430 98 - 2193130 GGTTGCAAGCAGTTTGAGAGGGAAGTGGAGAAGCATCTTAAAGGACACAGAGGTCAAAAGA-AGTTGGAGCTCTAATGAAAGAGTTG-TCAACAGCATCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047501 98 - 77216781 GTTTATAAGCAGTTTGAGAGAGAAGTGGAGAAGCACCTTAAATGACACAGAAGTCAAAAGA-ATTTGGAGCTTTAATGAAAGAGTTA-TCAGTAGCATCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960110 98 - 80997621 GTTTATAAGCAGTTTGAGAGAGAAGTGGAGAAGCACCTTAAATGACACAGAAGTCAAAAGA-ATTTGGAGCTTTAATGAAAGAGTTA-TCAGTAGCATCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016359 98 + 10377808 GTTTACAAGCAGTTTGAGAGAGAAGTGGAGAAGCACCTTAAATGACACAGAAGTCAAAAGA-ATTTGGAGCTTTAATGAAAGAGTTA-TCAGTAGCATCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903468 98 - 8458610 GTTTATAAGCAGTTTGAGAGAGAAGTGGAGAAGCACCTTAAATGACACAGAAGTCAAAAGA-ATTTGGAGCTTTAATGAAAGAGTTA-TCAGTAGCATCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859217 98 + 75148670 GTTTATAAGCAGTTTGAGAGGGAAGTGGAGAAGCACCTTAAATGACACAGAAGTCAAAAGA-ATTTGGAGCTTTAATGAAAGCGTTA-TCAGTAGCATCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082649 98 + 4244037 GTTTATAAGCAGTTTGAGAGAGAAGTGGAGAAGCACCTTAAATGACACAGAAGTCAAAAGA-ATTTGGAGCTTTAATGAAAGAGTTA-TCAGTAGCATCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110560 98 + 4569836 GTTTATAAGCAGTTTGAGAGGGAAGTGGAGAGGCACCTTAAGTGACATAGAAGTCAAAAGA-AGTTGGAGCTTTAATGAAAGAGTTA-TCAGTAGCATCC i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22779161 73 + 28711273 GGTTATGAGCAG------------------------CTGAAGTGACACAGAAGCCAAAGAA-AATCAGAATTGCAATGAGGG-GTGG-CCAACAGCAACC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22049110 98 - 122082543 GGGTAC-AGCAACTGGAGAGGACAATGGAGGAGCAGCTGAGGGGACATGGAAGCCAAACGATGATAAGAGTTTCACTGAGGGGGTTAGTCAACAG-ATCA i mm10.chr11 C 0 C 0 s canFam3.chr9 21390131 90 + 61074082 TGTTACGAGCAGTTGGAGTGGGAA--------GCAGCTGAAGCAATACAGAAGTCAAAATA-AGTTGAGGTTTTGATGAAGGGCTAG-TCAATGGCATCC i canFam3.chr9 C 0 I 104 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=1501298.000000 s hg38.chr17_GL383564v2_alt 66062 216 + 133151 AGGGCAAGGATGGT--GAGAATCAGACAAATCTACT-GGTTAAAGCAATGGGGAGACTCCTGGTGATTATAAAGAGAACAGAGTCTGTGGGAGGCTGAGGGAAGAAGCTGTATTTCCATGTTTTTTTCATGTCTGTCTCAAATCACCAACGTGATAGTGAGTGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT s panTro5.chr17 16252648 216 + 83181570 AGGGCAAGGATGGT--GAGAATCAGACAAATCTACT-GGTTAAAGCAATGGGGAGACTCCTGGTGATTATAAAGAGAACAGAGTCTGTGGGAGGCTGAGGGAAGAAGCTGTATTTCCATGGTTTTTTCATGTCTGTCTCAAATCACCAACGTGATAGTGAGTGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160120 216 + 83442489 AGGGCAAGGATGGT--GAGAATCAGACAAATCTACT-GGTTAAAGCAATGGGGAGACTCCTGGTGATTATAAAGAGAACAGAGTCTGTGGGAGGCTGAGGGAAGAAGCTGTATTTCCATGGTTTTTTCATGTCTGTCTCAAATCACCAACGTGATAGTGAGTGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995157 216 + 4267968 AGGGCAAGGATGGT--GAGAATCAGACAAATCTACT-GGTTAAAGCAATGGGGAGACTCCTGGTGATTATAAAGAGAACAGAGTCTGTTGGAGGCTGAGGGAAGAAGCTGTATTTCCATGTTTTTTTCATGTCTGTCTCAAATCACCAACGTAATAGTGAGTGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975528 216 - 2193130 AGGGCAAGGATGGT--AAGAATCAGACAAATCTACT-GGTTAAAGCAATGGGGAGACTCCTGGTGATTATAAAGAGAACAGAGTCTGTGGGAGGCTGAGGGAAGAAGCTGTATTTCCATGTTTTCTTCATGTCTGTCTCAAATCACCAATGTGATAGTGAGTGTAATGCAAAACTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047599 214 - 77216781 AGGACAAGGACGGT--GAGAATAAGACAAACCTACT--GTTAAAGCAGCGGGGAGACTCCTGGTGACTAAAAAGAGAACAGGGTCTATGGGATGCTGAGAGAAGAAGCTATATTTCCATG-TTTTTTCATGTCTGTCTCAAATCACCAACGTGGTAGTGAGCGTAATGCAAAAGTTCAACACAACACATTTGTATT-------CAGC-TGAC--TTTGCTTTATCTTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960208 214 - 80997621 AGGACAAGGACGGT--GAGAATCAGACAAACCTACT--GTTAAAGCAACGGGGAGACTCCTGGTGACTAAAAAGAGAACAGGGTCTATGGGATGCTGAGAGAAGAAGCTATATTTCCATG-TTTTTTCATGTCTGTCTCAAATCACCAACGTGGTAGTGAGCGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016457 214 + 10377808 AGGACAAGGACGGT--GAGAATAAGACAAACCTACT--GTTAAAGCAGCGGGGAGACTCCTGGTGACTAAAAAGAGAACAGGGTCTATGGGATGCTGAGAGAAGAAGCTATATTTCCATG-TTTTTTCATGTCTGTCTCAAATCACCAACGTGGTAGTGAGCGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903566 214 - 8458610 AGGACAAGGACGGT--GAGAATCAGACAAACCTACT--GTTAAAGCAGCAGGGAGACTCCTGGTGACTAAAAAGAGAACAGGGTCTATGGGATGCTGAGAGAAGAAGCTATATTTCCATG-TTTTTTCATGTCTGTCTCAAATCACCAACGTGGTAGTGAGCGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859315 210 + 75148670 AGGACAAGGACGGT--GAGAATCAGACAAACCTACT--ATTAAAGCAGCGGGGAGACTCCTGGTGACTAAAAAGAGAACAGGGTCTATGGGATGCTGAGAGAAGAAGCTATATTTCCATG-TTTTTTCATGTCTGTCTCAAATCACCAACGTGAT----AGCGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082747 214 + 4244037 AGGACAAGGACGGT--GAGAATCAGACAAACCTACT--GTTAAAGCAGCAGGGAGACTCCTGGTGACTAAAAAGAGAACAGGGTCTATGGGATGCTGAGAGAAGAAGCTATATTTCCATG-TTTTTTCATGTCTGTCTCAAATCACCAACGTGGTAGTGAGCGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110658 214 + 4569836 AGGGCAAGGACTGT--GAGAACCAGACAAACCTACT--GTTAAAGCAACGGGGAGAATCCTGGTGACTAAAAAGAGAACAGGGTTTGTGGGATGCTGAGGGAAGAAGCTGTATTTCCATG-TTTTTTCATGTCTGTCTCAAATCCCCAACGTGATAGTGAACGTAATGCAAAAGTTCAACACAACACATTTGTACT-------CAGC-TGAC--TTTGCTTTATCTTCT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22779234 207 + 28711273 ATG-TAAAGATGGT--GAGAATCAGACAAATTTGCT-GTTtctagcaatggggagatcactggtgactataacaagaatagGGTCTG-----------AGAAAGAAGCCATATTTCAGTGTTGCTTTCATGTCTTTCTCAAATCAATAGCATGAGAGCAAACTTAATGCAAAAGTTCAACTGAACACATGCTTGGT-------AAGCATGACATTTTGCTTTATCCTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22049208 199 - 122082543 AGGGAGAGGAGGGT--CAG---------------CTTGGATATGAAAATAGGGTGTTCACTGGTGACTATGAAGAG-ACATGGTCTGTAGGATGCC-AGGGAAGAAGCAGTATCCTCATAGCTCCTTCATGTTCACCTCAAATGATCAACGTGACTGTGATTGTAATGCAGAGGTTTACC---ACCCACTTGTACT------GAAGCATGAA--ACTTCTTTATTTGCT i mm10.chr11 C 0 I 33 s canFam3.chr9 21390325 223 + 61074082 agggccaggaaaattgaggattcagaaaagtcagtg--ggcatagcaataaggagatccctggtgaccacagagagggcagagtctgtgagatgctgggggaagaaaccatatttcaatggCTCTTTCACATCTGTTTCAAATAACCAACTTGATAGTAAACTTAGTGCACA-GTTCAACACAACATATTCATACTAAACATGAAGC-TTAA--TTTGCTTTATCCTCT i canFam3.chr9 I 104 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=102647.000000 s hg38.chr17_GL383564v2_alt 66278 15 + 133151 GTGT-ACTGTCAAAAG- s panTro5.chr17 16252864 15 + 83181570 GTGT-ACTGTCAAAAG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160336 15 + 83442489 GTGT-ACTGTCAAAAG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995373 15 + 4267968 GTGT-ACTGTCAAAAG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975744 15 - 2193130 GTGT-ACTGTCAAAAG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047813 15 - 77216781 GTGT-ACTGTCAAAAG- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960422 15 - 80997621 GTGT-ACTGTCAAAAG- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016671 15 + 10377808 GTGT-ACTGTCAAAAG- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903780 15 - 8458610 GTGT-ACTGTCAAAAG- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859525 15 + 75148670 GTAT-ACTGTCAAAAG- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082961 15 + 4244037 GTGT-ACTGTCAAAAG- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110872 15 + 4569836 GTGT-ACTGTCAAAAG- i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22779441 15 + 28711273 GTGT-ACTGCTAAAAA- i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21390548 17 + 61074082 GTGTAACTCTTTAAAAT i canFam3.chr9 C 0 C 0 e mm10.chr11 22049407 33 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=828095.000000 s hg38.chr17_GL383564v2_alt 66293 112 + 133151 GTTTTAGCATCTGCCCTCTCCCTTGATCTGCAGAGCAGGACACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCCAGCTTTTTCAGGAAGACTAGCACCATT s panTro5.chr17 16252879 112 + 83181570 GTTTTAGCATCTGCCCTCTCCCTTGATCTGCAGAGCAGGACACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCCAGATTTTTCAGGAAGAATAGCACCATT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160351 112 + 83442489 GTTTTAGCATCTGCCCTCTCCCTTGATCTGCAGAGCAGGACACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCCAGATTTTTCAGGAAGACTAGCACCATT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995388 112 + 4267968 GTTTTAGCATCTGCCCTCTCCCTTGATCTGCAGAGCAGGACACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCCAGCTTTTTCAGGAAGACTAGCACCATT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975759 112 - 2193130 GTTTTAGCATCTGCCCTCTCCCTTGATCTGCAGAGCAGGACACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCCGGATCCAGCTTTATCAGGAAGACTAGCACCATT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047828 112 - 77216781 GTCTTAGCATCTGCCCTCTCCCCTGATCTGCAGAGCAGGATACATATATAGG-TTTTCATTCCGTCTCTGAGTGGGCCCTGGATCTAACTTTCTCAGGAAGACTAGCACCATT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960437 112 - 80997621 GTCTTAGCATCTGCCCTCTCCCCTGATCTGCAGAGCAGGATACATATATAGG-TTTTCATTCCGTCTCTGAGTGGGCCCTGGATCTAACTTTCTCAGGAAGACTAGCACCATT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016686 112 + 10377808 GTCTTAGCATCTGCCCTCTCCCCTGATCTGCAGAGCAGGATACATATATAGG-TTTTCATTCCGTCTCTGAGTGGGCCCTGGATCTAACTTTCTCAGGAAGACTAGCACCATT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903795 112 - 8458610 GTCTTAGCATCTGCCTTCTCCCCTGATCTGCAGAGCAGGATACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCTAACTTTCTCAGGAAGACTAGCACCATT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859540 112 + 75148670 GTCTTAGCATCTGCCCTCTCCCCTGATCTGCAGAGCAGGATACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCTAACTTCCTCAGGAAGACTAGCACCATT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2082976 112 + 4244037 GTCTTAGCATCTGCCCTCTCCCCTGATCTGCAGAGCAGGACACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCTAACTTTCTCAGGAAGACTAGCACCATT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110887 112 + 4569836 GTCTTAGCATCTGCCCTCTCCCCTGATCTGCAGAGCAGGATACATATATAGG-TTTTCATTCCATCTCTGAGTGGGCCCTGGATCCAACTTTCTCAGGAAGACTAGCACCACT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22779457 113 + 28711273 GTTTTATCACCTATTTTTTCCCTTGATTTGCAGAGGAGTCTACATAAACAGGTTTTTCATTCCTTCTCTGAGCATTCCCCAAATAAAACTTCCCCAAGAAGTCTAGCGCAATT i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22049440 111 - 122082543 GTGTTAGCATTTGCTCTTTCCTTTGACCTGTAGAGCATTCTACGCG-GCAGA-TTTCAATCCCCTCTCATCCTGTTCCTTAACTCTCACCATCCCAGGTAGAGCAAATTCATT i mm10.chr11 I 33 I 285 s canFam3.chr9 21390565 110 + 61074082 GTTTTGGCATCTGTTCTTCCCTTTGATCTGTGAAGCAGT-CGCATAAACAGG-TTTTCATCCTTCTTCTGAGTGGTTCCCAAATCCAGTCTTCCCA-GAAGACTAGGACTATT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=341643.000000 s hg38.chr17_GL383564v2_alt 66405 51 + 133151 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGC s panTro5.chr17 16252991 51 + 83181570 AAATTACATCGTCCTGGACTGTGCCATGCTCTT--------GTCTATTCTAGACTGAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160463 51 + 83442489 AAATTACATCGTCCTGGACTGTGCCATGCTCTT--------GTCTATTCTAGACTGAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995500 51 + 4267968 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975871 51 - 2193130 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047940 51 - 77216781 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960549 51 - 80997621 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016798 51 + 10377808 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903907 51 - 8458610 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859652 49 + 75148670 AAATTACATCATCCTGGAT--TGTCATGCTCTT--------GTCTATTCTAGACTGAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2083088 51 + 4244037 AAATTACATCGTCCTGGATTGTGTCATGCTCTT--------GTCTATTCTAGACTGAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2110999 45 + 4569836 AAATTACATCATCCTGGATTGTGTCA------T--------GTCTATTCTAGACTGAAT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22779570 54 + 28711273 ACGTTACATTGCCCTGGATTATTTGACATTCTT-----CTCCTCTATTCCAGACTGGGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21390675 56 + 61074082 AAATTACATTGTCTTGGATTGTTTCATGTTCTTCTTGACTCCTCTATTCTAGATTG--- i canFam3.chr9 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=172997.000000 s hg38.chr17_GL383564v2_alt 66456 27 + 133151 TGATAGTCTAGAGTAGTCAAAAACATA s panTro5.chr17 16253042 27 + 83181570 TGATAGTCTAGAGTAGTCAAAAACATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160514 27 + 83442489 TGATAGTCTAGAGTAGTCAAAAACATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995551 27 + 4267968 TGATAGTCTAGAGTAGTCAAAAACATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975922 27 - 2193130 TGATAGTCTAGAGTAGTCAAAAACATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30047991 27 - 77216781 TGATAGTCTAGAGTAGTCAAAAACATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960600 27 - 80997621 TGATAGTCTAGAGTAGTCAAAAACATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016849 27 + 10377808 TGATAGTCTAGAGTAGTCAAAAACATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903958 27 - 8458610 TGATAGTCTAGAGTAGTCAAAACCATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859701 27 + 75148670 TGATAGTCTAGAGTAGTCAAAAACATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2083139 27 + 4244037 TGATAGTCTAGAGTAGTCAAAACCATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111044 27 + 4569836 TGATAGTCTAGAGTAGTCAAAAACATA i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21390731 18 + 61074082 -GATAG--------AGTTAAAAACATA i canFam3.chr9 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e otoGar3.GL873537 22779624 0 + 28711273 C e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=33561.000000 s hg38.chr17_GL383564v2_alt 66483 6 + 133151 GCATAG s panTro5.chr17 16253069 6 + 83181570 GCATAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160541 6 + 83442489 GCATAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995578 6 + 4267968 GCATAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975949 6 - 2193130 GCATAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048018 6 - 77216781 GCACAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960627 6 - 80997621 GCACAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016876 6 + 10377808 GCACAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903985 6 - 8458610 GCACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859728 6 + 75148670 GCACAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2083166 6 + 4244037 GCACAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111071 6 + 4569836 GCATAG i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390749 0 + 61074082 C e otoGar3.GL873537 22779624 0 + 28711273 C e aotNan1.NW_018502359v1 6958452 0 - 7032639 C e cebCap1.NW_016107730v1 1843625 0 + 1920343 C e saiBol1.JH378271 1794734 0 + 3513951 C e calJac3.chr5 46075811 0 - 159171411 C a score=42267.000000 s hg38.chr17_GL383564v2_alt 66489 5 + 133151 ATCTC s panTro5.chr17 16253075 5 + 83181570 ATCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160547 5 + 83442489 ATCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995584 5 + 4267968 ATCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975955 5 - 2193130 ATCTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048024 5 - 77216781 ATCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960633 5 - 80997621 ATCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016882 5 + 10377808 ATCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903991 5 - 8458610 ATCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859734 5 + 75148670 ATCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2083172 5 + 4244037 ATCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111077 5 + 4569836 ATCTC i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1794734 5 + 3513951 ATCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843625 5 + 1920343 ATCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958452 5 - 7032639 ATCTT i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390749 0 + 61074082 C e otoGar3.GL873537 22779624 0 + 28711273 C e calJac3.chr5 46075811 0 - 159171411 C a score=315061.000000 s hg38.chr17_GL383564v2_alt 66494 31 + 133151 gtgggagctgaatgatgagaacacgtggaca s panTro5.chr17 16253080 31 + 83181570 gtgggagctgaatgatgagaacacgtggaca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160552 31 + 83442489 gtgggagctgaatgatgagaacacgtggaca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995589 31 + 4267968 gtgggagctgaatgatgagaacacatggaca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975960 31 - 2193130 gtgggagctgaatgatgagaacacatggaca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048029 31 - 77216781 gtgggagctgaattatgagaacacatggaca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960638 31 - 80997621 gtgggagctgaattatgagaacacatggaca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016887 31 + 10377808 gtgggagatgaattatgagaacacatggaca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1903996 31 - 8458610 gtgggagctgaattatgagaatacatggaca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859739 31 + 75148670 gtgggagctgcattatgagaacacatggaca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2083177 31 + 4244037 gtgggagctgaattatgagaatacatggaca i manLeu1.NW_012106252v1 C 0 I 6184 s colAng1.NW_012122154v1 2111082 31 + 4569836 gtggtagctgaattatgagaacacatggaca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075811 31 - 159171411 gtgggagctaaatgatgagaacacatggaca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794739 31 + 3513951 gtgggagctaaatgatgagaacacatggaca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843630 31 + 1920343 gtgggagctaaatgatgagaacacatggaca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958457 31 - 7032639 gtgggagctcaatgatgagaacacatggaca i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390749 0 + 61074082 C e otoGar3.GL873537 22779624 0 + 28711273 C a score=143903.000000 s hg38.chr17_GL383564v2_alt 66525 18 + 133151 tatagaggggaacaacac s panTro5.chr17 16253111 18 + 83181570 tatagaggggaacaacac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160583 18 + 83442489 tatagaggggaacaacac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995620 18 + 4267968 tatagacgggaacaacac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1975991 18 - 2193130 tatagaggggaacaacac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048060 18 - 77216781 cagagaggggaacaacac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960669 18 - 80997621 cagagaggggaacaacac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016918 18 + 10377808 cagagaggggaacaacac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904027 18 - 8458610 cagagaggggaacaacac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859770 18 + 75148670 cagagaggggaacaacac i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2111113 18 + 4569836 cagagaggggaacaacac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075842 18 - 159171411 catagaggggtacaacac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794770 18 + 3513951 catagaggggtacaatac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843661 18 + 1920343 catagaggggtacaatac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958488 18 - 7032639 cgtagaggggtacaatac i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390749 0 + 61074082 C e otoGar3.GL873537 22779624 0 + 28711273 C e manLeu1.NW_012106252v1 2083208 6184 + 4244037 I a score=673813.000000 s hg38.chr17_GL383564v2_alt 66543 74 + 133151 acactggagccttctggagggtagagggtgggaggagggagaggatcaggaaaaataactaatgggtactaggc s panTro5.chr17 16253129 74 + 83181570 acactggagccttctggagggtagagggtgggaggagggagaggatcaggaaaaataactaatgggtactaggc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160601 74 + 83442489 acactggagccttctggagggtagagggtgggaggagggagaggatcaggaaaaataactaatgggtactaggc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995638 74 + 4267968 acactggagccttctggagggtagagggtgggaggagggagaggatcaggaaaaataactaatgggtactaggc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976009 72 - 2193130 acactggagcctttcgga-ggtagagggtgggaggagagagaggatcaggaaaaataact-atgggcactaggc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048078 74 - 77216781 acactggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaataactaacggatactaggc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960687 74 - 80997621 acactggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaataactaacggatactaggc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2016936 74 + 10377808 acactggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaataactaacggatactaggc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904045 74 - 8458610 acactggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaataactaacggatactaggc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859788 74 + 75148670 acactggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaataactaacggatactaggc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089392 74 + 4244037 acactggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaataactaacggatactaggc i manLeu1.NW_012106252v1 I 6184 C 0 s colAng1.NW_012122154v1 2111131 74 + 4569836 acaccggggccttttgaagggcagaaggtgggaggagggagaggataaggaaaaatgactaatgggtactaggc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075860 67 - 159171411 acactggggcctttc-------agagggtggcagaagggagaggatcagggaaaatgactaatgtgtactaggc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794788 73 + 3513951 acactggggtctttcagagggtagagggtggcagaagggagaggatcagggaaaataatgaatgaagactagg- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843679 74 + 1920343 acactggggcctttcagagggtagagggtggcagaagggagaggatcagggaaaataactaatgaagactaggc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958506 74 - 7032639 acactggggcctttcagagggtagagggtggcagaagggagaggatcagggaaaataactaatgtgttctaggc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390749 0 + 61074082 C e otoGar3.GL873537 22779624 0 + 28711273 C a score=54033.000000 s hg38.chr17_GL383564v2_alt 66617 7 + 133151 ttaatac s panTro5.chr17 16253203 7 + 83181570 ttaatac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160675 7 + 83442489 ttaatac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995712 7 + 4267968 ttaatac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976081 7 - 2193130 ttgatac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048152 7 - 77216781 ttaatac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960761 7 - 80997621 ttaatac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017010 7 + 10377808 ttaatac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904119 7 - 8458610 ttaatac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859862 7 + 75148670 ttaatac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089466 7 + 4244037 ttaatac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111205 7 + 4569836 ttaatac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075927 7 - 159171411 ttaatac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794861 3 + 3513951 -taa--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843753 4 + 1920343 ttaa--- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958580 7 - 7032639 gtaatac i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21390749 7 + 61074082 CTGATAC i canFam3.chr9 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e otoGar3.GL873537 22779624 0 + 28711273 C a score=848904.000000 s hg38.chr17_GL383564v2_alt 66624 90 + 133151 ctgggtgatgaaataatctgtaaaacaaactcccatgacacaagtttatctatgtaacaaacctgcacttgtatccctcaacttaaaata s panTro5.chr17 16253210 90 + 83181570 ctgggtgatgaaataatctgtaaaacaaactcccatgacacaagtttatctatgtaacaaacctgcacttgtatccctcaacttaaaata i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160682 90 + 83442489 ctgggtgatgaaataatctgtaaaacaaactcccatgacacaagtttatctatgtaacaaacctgcacttgtatccctcaacttaaaata i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995719 90 + 4267968 ctgggtgatgaaataatctgtaaaacaagctcccacgacacaagtttatctatgtaacaaacctgcacttgtatccctcaacttaaaata i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976088 88 - 2193130 ctgggtgatgaaataatctgt-aaacaaact-ccatgacacaagtttatctatgtaacaaacctgcacttgtatccctcaacttaaaata i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048159 90 - 77216781 ctgggtaatgaagtaatctgtagaacaaactctcatgacacaagtttatctatgtaacaaacctgcacttgtatccctgaacttaaaata i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960768 90 - 80997621 ctgggtaatgaagtaatctgtagaacaaactctcatgacacaagtttatctatgtaacaaacctgcacttgtatccctgaacttaaaata i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017017 90 + 10377808 ctgggtaatgaagtaatctgtagaacaaactctcatgacacaagtttatctatgtaacaaacctgcacttgtatccctgaacttaaaata i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904126 90 - 8458610 ctgggtgatgaagtaatctgtagaacaaactctcatgacacaagtttatctatgtaacaaacctgcacttgtatccctgaacttaaaata i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859869 90 + 75148670 ctgggtgatgaagtaatctgtagaacaaactctcatgacacaagtttatctatgtaacaaacctgcacttgtatccctgaacttaaaata i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089473 90 + 4244037 ctgggtgatgaagtaatctgtagaacaaactctcatgacacaagtttatctatgtaacaaacctgcacttgtatccctgaacttaaaata i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111212 90 + 4569836 ctgggtgatgaaataatctgtagaacaaactctcatgacacaagtttatctatgtaacaaatctgcccttgtatccctgaatttaaaata i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46075934 85 - 159171411 ctgggtgatggaataatctgtacaacaaactcccatgacacaagtttatctatgtaagaaacctgcgcctgtacccctcaact-----ta i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794864 84 + 3513951 -tgggtgctgaaataatctgtacaacaaactcccatgacacaagtctatctatataacaaatctgcacttgtacccctcaact-----ta i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843757 84 + 1920343 -tgggtgacgaaataatctgtataagaaactcccacgacacaagtttatctatataacaaacctgcgcttgtacccctcaact-----ta i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958587 85 - 7032639 ctgggtgatgaaataatctgtacaacaaacctccatgacacaagtttatctatgtaacaaacctgcacttgtacccctcaact-----ta i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390756 0 + 61074082 C e otoGar3.GL873537 22779624 0 + 28711273 C a score=119847.000000 s hg38.chr17_GL383564v2_alt 66714 16 + 133151 aaagttaaaaaaaaaC s panTro5.chr17 16253300 16 + 83181570 aaagttaaaaaaaaaC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160772 15 + 83442489 aaagtt-aaaaaaaaC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995809 14 + 4267968 aaagtt--aaaaaaaC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976176 15 - 2193130 aaagtt-aaaaaagaC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048249 14 - 77216781 aaagtt--aaaaaaaC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960858 14 - 80997621 aaagtt--aaaaaaaC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017107 14 + 10377808 aaagtt--aaaaaaaC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904216 14 - 8458610 aaagtt--aaaaaaaC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859959 14 + 75148670 aaagtt--aaaaaaaC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089563 14 + 4244037 aaagtt--aaaaaaaC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111302 14 + 4569836 aaagtt--aaaaaCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076019 10 - 159171411 aaagtt------aaaC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794948 14 + 3513951 aaagtt--aaaaaaaC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843841 14 + 1920343 aaagtt--aaaaaaaC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958672 14 - 7032639 aaagtt--aaaaaaaC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22779624 11 + 28711273 AGAGTT--AAAAA--- i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e proCoq1.NW_012135969v1 2969552 1730 + 8555354 I e micMur3.chr16 35882786 1708 - 65901067 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390756 0 + 61074082 C a score=205156.000000 s hg38.chr17_GL383564v2_alt 66730 15 + 133151 ACATAGCATAGATGA s panTro5.chr17 16253316 15 + 83181570 ACATAACATAGATGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160787 15 + 83442489 ACATAGCATAGATGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995823 15 + 4267968 ACATAGCATAGATGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976191 15 - 2193130 ACATAGCATAGATGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048263 15 - 77216781 ACATAGCATCGATGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960872 15 - 80997621 ACATAGCATCGATGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017121 15 + 10377808 ACATAGCATCGATGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904230 15 - 8458610 ACATAGCATCGATGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859973 15 + 75148670 ACATAGCATCGATGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089577 15 + 4244037 ACATAGCATCGATGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111316 15 + 4569836 ACATAGCATCGATGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076029 15 - 159171411 ACATAGCATAGATGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794962 15 + 3513951 ACATAGCATAGATGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843855 15 + 1920343 ACATAGCATAGATGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958686 15 - 7032639 ACATAGCATAGATGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35884494 15 - 65901067 ACATAGCACGGATGG i micMur3.chr16 I 1708 C 0 s proCoq1.NW_012135969v1 2971282 15 + 8555354 ACATAGCACGGATGA i proCoq1.NW_012135969v1 I 1730 C 0 s otoGar3.GL873537 22779635 14 + 28711273 -CATAGCATGAGTGA i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e dasNov3.JH570468 363512 852 - 852752 I e canFam3.chr9 21390756 0 + 61074082 C a score=1078987.000000 s hg38.chr17_GL383564v2_alt 66745 79 + 133151 ACTTTGTATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGACTCCATTCCCATTGGGAGTCCAAGA-----CTGAGTGTA s panTro5.chr17 16253331 79 + 83181570 ACTTTGTATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGACTCCATTCCCATTGGGAGTCCAAGA-----CTGAGTGTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160802 79 + 83442489 ACTTTGTATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGACTCCATTCCCATTGGGAGTCCAAGA-----CTGAGTGTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995838 79 + 4267968 ACTTTGTATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGACTCCATTCCCATTGGGAGTCCAAGA-----CTGAGTGTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976206 79 - 2193130 ACTTTGTATTTTTCTGACTTGGCTTGGTCCCGGAAGACTC-CAAGACTCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048278 79 - 77216781 ACTTTACATTTTTCTGACTTGGCTTGGTCCCTGAAGACTG-CAAGATTCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960887 79 - 80997621 ACTTTACATTTTTCTGACTTGGCTTGGTCCCTGAAGACTG-CAAGATTCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017136 79 + 10377808 ACTTTACATTTTTCTGACTTGGCTTGGTCCCTGAAGACTG-CAAGATTCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904245 79 - 8458610 ACTTTACATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGATTCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64859988 79 + 75148670 ACTTTACATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGATTCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089592 79 + 4244037 ACTTTACATTTTTCTGACTTGGCTTGGTCCCTGAAGACTC-CAAGATTCCATTCCCGTTGGGAGTCCAGGA-----CTGAGTGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111331 79 + 4569836 ACTTTATATTTTTCTGACTTGGTTTGGTCCCTGAAGACTC-CAAGACTCCATTCCCTTTGGGAGTCCAGGA-----CTGAGTATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076044 71 - 159171411 GCTTTGCATTTTTCTGACTTGGCTGGGTCCCTGAAGACTC-CAAGACCCCATTCCCTCTGGGAGTCCAGGA-----C-------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1794977 79 + 3513951 ACTTTGCATTTTTCTGACTTGGCCGGGTCCCTGAAGACTT-CAAGACCCCATTCTCATTGGGAGCCCAGGA-----CTGAGTGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843870 79 + 1920343 ACTTTGCATTTTTCTGACTTGGCTGGGTCCCTGAAGACTA-TAAGACCTCATTCTCATTGGGAGCCCAGGA-----CTGAGTGTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958701 79 - 7032639 ACTTTGCATTTTTCTGACTTGGTTGGGTCCCTGAAGACTC-CAAGACCCCATTCCCATTGGGAGTCCAGGA-----CTGAGTGTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35884509 78 - 65901067 ACTTTGTGTTTTTCTGACTTGGCTTGGTCCCTGAAGAGCC-CAAG-CTCCATTCCCACTGGGAAACCAGGA-----TGGAGAGTA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2971297 78 + 8555354 ACTTTGTGCTTTTCTGACTTGGCTGGGTCCCTGAAGACCC-CAAG-CTCCATTCCCACTGGGGGACCAGGA-----TGTAATGTA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22779649 84 + 28711273 ACTCTGTTTTTTTCTGACTTGGTTTGGTCCCTGAAGACCCTCAAA-CTCAACACTCCCTTGGGGTCTAAGATATAGTATAGTGTA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21390756 75 + 61074082 ACTTTGCATTTTTCTGGTTTGGCTTGGTTCCTAAAGACTT-CCAAGC----TTCCTATTGGGAGTTGAAGA-----CCGAATATA i canFam3.chr9 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e dasNov3.JH570468 363512 852 - 852752 I a score=92891.000000 s hg38.chr17_GL383564v2_alt 66824 9 + 133151 AGAGAAAC-A s panTro5.chr17 16253410 9 + 83181570 AGAGAAAC-A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160881 9 + 83442489 AGAGAAAC-A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995917 9 + 4267968 AGAGAAAC-A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976285 10 - 2193130 AGAGAAACAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048357 10 - 77216781 AGAGAAACAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960966 10 - 80997621 AGAGAAACAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017215 10 + 10377808 AGAGAAACAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904324 10 - 8458610 AGAGAAACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64860067 10 + 75148670 AGAGAAACAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089671 10 + 4244037 AGAGAAACAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111410 10 + 4569836 AGAGAAACAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076115 6 - 159171411 ----AGACAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1795056 10 + 3513951 AGAGAGACAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843949 10 + 1920343 AGAGAGACAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958780 10 - 7032639 AGAGAGACAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35884587 9 - 65901067 AGAGAAGCA- i micMur3.chr16 C 0 I 112 s proCoq1.NW_012135969v1 2971375 9 + 8555354 AGAGAAACA- i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22779733 9 + 28711273 GGAGAAATA- i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21390831 9 + 61074082 AGAGAAACA- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 364364 10 - 852752 AGAGAAATGA i dasNov3.JH570468 I 852 C 0 e mm10.chr11 22049551 285 - 122082543 I a score=1374122.000000 s hg38.chr17_GL383564v2_alt 66833 112 + 133151 TGGTGGCTCTGGAGAGGATTTGTAGAACTACCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGCTCAGCGTAGCTTACTGCTGACCTGGCTCATTCTTCAGCCCC s panTro5.chr17 16253419 112 + 83181570 TGGTGGCTCTGGAGAGGATTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGCTCAGCCTAGCTTAATGCTGACCTGGCTCATTCTTCAGCCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16160890 112 + 83442489 TGGTGGCTCTGGAGAGGATTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGCTCAGCCTAGCTTAATGCTGACCTGGCTCATTCTTCAGCCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3995926 112 + 4267968 TGGTGGCTCTGGAGAGGATTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGCTCAGCCTAGCTTACTGCTGACCTGGCTCATTCTTCAGCCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976295 112 - 2193130 TGGTGGCTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGCTCAGCCTAGCTTACTGCTGACCTGGCTCATTCTTCAGCCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048367 112 - 77216781 CAGTGGCTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGATCAGCCTAACTTACTGCTGACCTGGCTCATTCTTCAGCCCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27960976 112 - 80997621 CAGTGGCTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGATCAGCCTAACTTACTGCTGACCTGGCTCATTCTTCAGCCCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017225 112 + 10377808 CAGTGGCTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGATCAGCCTAACTTACTGCTGACCTGGCTCATTCTTCAGCCCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904334 112 - 8458610 TGGTGGTTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGATCAGCCTAACTTACTGCTGACCTGGCTCATTCTTCAGCCCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64860077 112 + 75148670 CAGTGGCTCTGGAGAGGGTTTGTAGAACTAGCCCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGATCAGCCTAGCTTACTGCTGACCTGGCTCATTCTTCAGCCCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089681 112 + 4244037 TGGTGGTTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTATCTGTTTTTGATCAGCCTAACTTACTGCTGACCTGGCTCATTCTTCAGCCCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111420 112 + 4569836 TGGTGGCTCTGGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCTGTTTTGAGGTGTTTGTATCTGTTTTTCCTCAGCCTAGCTTACTGCTGACCTGGTTCATTCTTCAGCCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076121 110 - 159171411 TGGTGGCTCCAGAGAGGGTTTGTAGAACTAGCTCCTGCGTTCCATTTTGAGGTGTTTGTA--TGTTTTTGCTCAGTCTAGCTTACTGCTGACCAGGCTCCCTCTCCAGCCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1795066 109 + 3513951 TGGTGGCCCCAGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGATGTTTGTA--TGTTTTTGCTCAGTCTAGCTTACTGCTGACC-GGCTCCTTCTCCAGCCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1843959 110 + 1920343 TGGTGGCTCCAGAGAGGGTTTGTAGAGCTAGCTCCTGAGTTCCACTTTGAGGTGTTTGTA--TGTTTTTGCTCAGTCTAGCTTACTGCTGACCGGGATCCTTCTCCAGCCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958790 110 - 7032639 CGGTGGCTCCAGAGAGGGTTTGTAGAACTAGCTCCTGAGTTCCATTTTGAGGTGTTTGTA--TGTTTTTGCTCAGTCTAGCTTACTGCTGACCAGGCTCCTTCTCCAGCCCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2971385 111 + 8555354 TGGCAGCTCGGGAGAGGGTTTGTGGAACTAGCCCCTGAATCCCGATTGGAGGTATCTGTAATTGTTTTTGCTCAGCCTGGCTTACAGCTGACACGGCTGATTCTCCAAGTC- i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22779743 75 + 28711273 TGGCAGTTCAGGAGAGGGTTTG--------------------------------TCTGTGTCTATCTTTGCTCAGCCTAGGT----ACTATCATGGCCCATTCTCCAGAGC- i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21390841 110 + 61074082 TGACAGCTCTGGAGAGGATTTGC-GTACTGGGCTCTGAATTCTATTTTAGGGTG-CTGTACTTCTCTTTGCCCAGCCAACATTACTACTGACCTGGCTTATTCTTCATGTAC i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 364374 95 - 852752 TAGTGGCTCTGGAGAGGGTATGTGGAAAT--CCCCCCAAACCTGTTTTGAGGTGTCTGTATATCTCTTTG--------------CTACTGACC-AGCTCATTCTTCAGATCC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I e micMur3.chr16 35884596 112 - 65901067 I a score=3682428.000000 s hg38.chr17_GL383564v2_alt 66945 258 + 133151 TCTCCTGCTTGTCCCTT--ATCAGAAGCCCCATTGAA---------CAGGGCCAAACTTGTTGGCTTATTTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAATGTCCTGAGGCTGGAGGATTGATAAATTGACAACAGTTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAGCTCTAAC--AGGCTGGCCCAAAACCATGGGCTGGGGTTGTTATTGGACAGTCTTTCTGCTTTTCTAATTCCCCTCTGGGAT s panTro5.chr17 16253531 257 + 83181570 TCTCCTGCTTGTCCCTT--ATCAGAAGCCCCATTGAA---------CAGGGCCAAACTTGTTGGCTTATTTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAATGTCCTGAGGCTGGAGGATTGATAAATTGACAACAGTTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAGCTCTAAC--AGACTGGCCCAAAACCATGGGCTGGGGTTGTTATTGGACAGTCTTTCTGCTTTTCTAATTCCC-TCTGGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16161002 257 + 83442489 TCTCCTGCTTGTCCCTT--ATCAGAAGCCCCATTGAA---------CAGGGCCAAACTTGTTGGCTTATTTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAATGTCCTGAGGCTGGAGGATTGATAAATTGACAACAGTTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAGCTCTAAC--AGACTGGCCCAAAACCATGGGCTGGGGTTGTTATTGGACAGTCTTTCTGCTTTTCTAATTCCC-TCTGGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3996038 258 + 4267968 TCTCCTGCTTGTCCCTT--ATCAGAAGCCCCATTGAA---------CAGGGCCAAACCTGTTGGCTTATTTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAATGTCCTGAGGCTGGAGGATTGATAAATTGACAACGGCTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTTTTCTAGGAAGCTCTAAC--AGGCTGGCCCAAAACCATGGGCTGGGGTTGTTATTGGACAGTCTTTCTGCTTTTCTAATTCCCCTCTGGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976407 258 - 2193130 TCTCCTGCTTGTCCCTT--ATCAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCCTATTTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAATGTCCTGAGGCTGGAGGATTGATAAATTGACAACAGTTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAGCTCTGAC--AGGCTGGCCCCAAACCATGGGCTGGGGTTGGTATTGGACAGTCTTTCTGCTTTTCTAATTCCCCTCTGGGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048479 258 - 77216781 TCTCCTGCTTGTCTCTT--ATTAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAGTGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGGTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAGTGTTTCTGTTTTTCTAATTCCCCTCTGGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27961088 258 - 80997621 TCTCCTGCTTGTCTCTT--ATTAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAGTGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGGTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAGTGTTTCTGTTTTTCTAATTCCCCTCTGGGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017337 258 + 10377808 TCTCCTGCTTGTCCCTT--ATTAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAGTGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGGTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAGTGTTTCTGTTTTTCTAATTCCCCTCTGGGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904446 258 - 8458610 TCTCCTGCTTGTCCCTT--ATTAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTATCCCTTCAA--TTTCTCCTCTCAGTGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGGTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAGTGTTTCTGTTTTTCAAATTCCCCTCTGAGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64860189 258 + 75148670 TCTCCTGCTTGTCCCTT--ATTAAAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAGTGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAGTGTTTCTGTTTTTCTAATTCCCCTCTGGGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2089793 258 + 4244037 TCTCCTGCTTGTCCCTT--ATTAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTACCCCTTCAA--TTTCTCCTCTCAGTGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGGTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAGTGTTTCTGTTTTTCTAATTCCCCTCTGGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111532 258 + 4569836 TCTCCTGCTTGTCCCTT--ATTAGAAGCCCCGTTGAA---------CAGGGCCAAACCTGTTGGCTTAGCTCCTGAATTACTCCTTCAA--TTTCTCCTCTCAATGTGCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGTTTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--GGACTGGCCCAAAACCATGGGCTGGGGTTGGTATTGGACAATGTTTCTGTTTTTCTAATTCCTCTCTGGGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076231 258 - 159171411 TTTGCTGCGTGTCCCTT--ATCAGAAGCCCTATTGAA---------CAGAGCCAAACCTGTTGGCTTAGGTCCTGAATTACCCTTTCAA--TTTCTTCTCTCAAAGTCCTGAGGCTGGGGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGTTTGTGGAAGGCCTATCTTCTGCCCTTCTAGGAAACTCTAAC--AGGCTGGCCCAGAACCATGGGCTGGGGTTGATACTGGACAGTGTTTCTGCTTCTCTCATTTCCCTCTGGGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1795175 258 + 3513951 TCTGCTTCTTGTCACTT--ATCAGATGCCCTACTGAA---------CAGAGCCAAACCTGTTGGCTTAGGTCCTGAATTACCCTTTCAA--TTTCTCCTCTTAAAGTCCTAAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGTTTATGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--AGGCTGGCCCAGAACCATGGGCTGGGGTTGATACTGGACAGTGTTTCTGCTTTTCTCTTTTCCCTCTGGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1844069 258 + 1920343 TCTGCTTCTTGTCGCTT--ATCAGAAGCCCTATTGAA---------CAGAGCCAAGCCTGTTGCCTTAGGTCCTGAATTACCCTTTCAA--TTTCTCCTCTTAAAGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGTCTGTGGAAGCCCTATCTTCTGCTCTTCTAGGAAACTCTAAC--AGGCTGGCCCAGAACCATGGGCTGGGGTCGATACTGGACAGTGTTTCTGCTTTTCTCATTTCCCTCTGGGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6958900 258 - 7032639 TCTGCTGCTTGTCCCTT--ATCAGAAGCCCTATTGAA---------CAGACCCAAACCTGTTGGCTTAGGTCCTGAATTACCCTTTCAA--TTTCTCCTCTCAAAGTCCTGAGGCTGGAGGATTGATAAATTGGCAACAGTTGCCTTTATGGAACAGTTTGTGGAATCCCTATCTTCTGCCCTTCTAGGAAACTCTAAC--AGGCTGGCCCAGAACCATGGGCTGGGGTTGATACTGGACAGTGTTTCTGCTTTTCTCATTTCCCTCTGGGAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35884708 234 - 65901067 TCTCCTGCTTGTCCCTC--ATCAGAAGCCCTGTTGAC---------CAGAGCCAAGCCTGTTGGCTTAGTTCCTGGATTTCCACCAGAA-------------AATGTAGTGAGGCTGGAGGATTGCCCAGTTGGCCACAGTTGCCTTTATGGAACAGCTTGTGGAAGCTGTATCTCATGT-------------TCTAAT--GGGCTGGCCCAGCACCATGGGCTGGGGTTGATATTGGACAGAGTTTCTGCTTTTCTAATTCACCCCTGGGAT i micMur3.chr16 I 112 C 0 s proCoq1.NW_012135969v1 2971496 258 + 8555354 TCTCCTGCTTGTCCCTC--ATCGGAAGCCCTGTTGAA---------CACAGCCAAGCCTGTTGGCTTAGTTCCTGGATTTCCATCACAA--TTTGTCCCCTCAATGTAGTGAGGCTGGAGGATTGCCCAGTTGGCCACAGTTGCCTTTATGGAGCAGCTTGTGGAAGCTGTATCTCATGTTCTTTTTGGCAACTCTAAC--GGGCTGGCCCAGCACCAGGGGCTGGGGTTGATATTGGACAGTGTTTCTGCTTTTCTAATTCTCCTCTGGGAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22779818 254 + 28711273 TCTTCTGCTTGTTCCTC--ATTGGAAACCCTGTTGAA---------CAGAGCCAAGCCTGTTGGCTTAGTCCCTGGGTCACCATCACATTCTTTTTCCCTCAAAGGTAGGGAGGCCAGAGGATTGACAACTTGGCCATAGTCACCTTTATGGAGCGGCCTGTAGATGCCCTGTCTCATGATCTTATGGGCAACTCTCAT--GGGCTGGCC-----CCATGGGCTGGGGTGGATA-CAGACAGTTTTTCTGCATTTCTAATCCCTCTCTGGGAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21390951 269 + 61074082 TCCCCTGCTTGTCCCTC--ACTGGAAATGTTGTTTGAGCATATTCCCAAAGCCAATCTTGTTGTTTTAGTTCCTGGATCACTATCATAA--TTTATCCCCTCAATGTGATAAGACTGAGTGATTGACAAATTTGCAACAGACACCTTTAGGGAACAGTCTATGGAAGCTTTATATCTTATTCTTATAAGTAGTTCTAACTAGGGCTGGCCCAGCAGGATAGGCTAGTGTTGGCATAAAACAGTGTTTTTGCTTTTTAAATTCTCCAGTGGGAC i canFam3.chr9 C 0 I 9 s dasNov3.JH570468 364469 183 - 852752 TCTCCTGCTTGTCCCTCTAGGTCGAAGCCTTCT-------------GAGAGCCAAACCCATAGGTTTAGTTCCTGGGTTACAACCACAA--TTTCTCCCCTGAAGGTGATGAGGCTGGGGGATTGATACATGGGCATCAGCCACCTTCACGGAGAAGCATGTGTACAC---------TGTCCTTACAGGCAGCTCCGAC------------------------TGGGGCTG------------------------------------------ i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22049551 285 - 122082543 I a score=4780788.000000 s hg38.chr17_GL383564v2_alt 67203 329 + 133151 CCCTCTTTGGCAAAAAGTC-CATCT---TCTTGCTCTGTGTGCATGTAGTGATACTGCTCCTGGCCTCTCCTTCTCA-TTTGTACATATTAAAATATAATTAATTTTCAAGTAGCCCA--ATGTAACTTCGTATTTctaaaaga--------ataaattttac-----atttctcacggtgacaatttcaagcaccagagcctggacattggagaagatggctttgggaagaaggagggag--gcctcctaatgcctttgaagtcccacaatgaggaa------ggtggcctCAGCAGAAGCCCCATCCTATGTCCACTCCGTGGTTAAGCATCGC-TGGTGGGTTGGCATGTGATCT s panTro5.chr17 16253788 329 + 83181570 CCCTCTTTGGCAAAAAGTC-CATCT---TCTTGCTCTGTGTGCATGTAGTGATACTGCTCCTGGCCTCTCCTTCTCA-TTTGTACATATTAAAATATAATTAATTTTCAAGTAGCCCA--ATGTAACTTCGTATTTctaaaaga--------ataaattttac-----atttctcatggtgacaatttcaagcaccagagcctggacattggagaagatggctttgggaagaaggagggag--gcctcctaatgcctttgaagtcccacaatgaggaa------ggtggcctCAGCAGAAGACCCATCCTATGTCCACTCCGTGGTTAAGCATCAC-TGGTGGGTTGGCATGTGATCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16161259 329 + 83442489 CCCTCTTTGGCAAAAAGTC-CATCT---TCTTGCTCTGTGTGCATGTAGTGATACTGCTCCTGGCCTCTCCTTCTCA-TTTGTACATATTAAAATATAATTAATTTTCAAGTAGCCCA--ATGTAACTTCGTATTTctaaaaga--------ataaattttac-----atttctcatggtgacaatttcaagcaccagagcctggacattggagaagatggctttgggaagaaggagggag--gcctcctaatgcctttgaagtcccacaatgaggaa------ggtggcctCAGCAGAAGACCCATCCTATGTCCACTCCGTGGTTAAGCATCAC-TGGTGGGTTGGCATGTGATCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3996296 329 + 4267968 CCCTCTTTGGCAAAAAGTC-CATCT---TCTTGCTCTGTGTGCATGTAGTGATACTGCTCCTGGCCTCTCCTTCTCA-TTTGTACATATTAAAATATAATTAATTTTCAAGTAGCCCA--ATGTAACTTCGTATTTctaaaaga--------ataaattttac-----atttctcacggtgacaatttcaagcaccagagcctggacattggagaagatggctttgggaagaaggagggag--gcctcctaatgcctttgaagtcccacaatgaggaa------ggtggcctCAGCAGAAGACCCATCCTATGTCCACTCCGTGGTTAAGCATCAT-TGGTGGGTTGGCATGTGATCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976665 329 - 2193130 CCCTCTTTGACAAAAAGTC-CATCT---TCTTGCTCTGTGTGCATGCAGTGATACCACTCCTGGCTTCTCCTTCTCA-TTTGTACACATTAAAATATAATTAATTTTCAAGTAGCCCA--ATGTCACTTCGTATTTctaaaaga--------ataaattttac-----atttctcacggtgagaatttcaagcgccagagcctggacattggagaagatggctttgggaagaaggagggag--gcttcctaatgcctttgaagtcccacaacgaggaa------ggtggcctCAGCAGAAGACCCATTCTATGTCCACTTCATGGTTAAGCATCAC-TGGTGGGTTGGCATGTGATCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30048737 329 - 77216781 CCCTCTTTGGCAAGAAGTC-CGTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTTTCCTTCTCA-TTTGTACACATTAAaacataattaattttcaagtagccca--gcgttactttgtatttctaaaata--------atgcattttac-----atttctcatggtgagaatttcaagcaccagagcctggacattggagaagatagctttgggaagaaggagggag--gcctcctaatgcctttgaagttccacaacaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCGC-TGGTAGGTTTACATGTACTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27961346 329 - 80997621 CCCTCTTTGGCAAGAAGTC-CGTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTTTCCTTCTCA-TTTGTACACATTAAAACATAATTAATTTTCAAGTAGCCCA--GCGTTACTTTGTATTTCTAAAATA--------ATGCATTTTAC-----atttctcatggtgagaatttcaagcaccagagcctggacattggagaagatagctttgggaagaaggagggag--gcctcctaatgcctttgaagttccacaacaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCGC-TGGTAGGTTTACATGTACTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017595 329 + 10377808 CCCTCTTTGGCAAGAAGTC-CGTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTCTCCTTCTCA-TTTGTACACATTAAAACATAATTAATTTTCAAGTAGCCCA--GCGTTACTTTGTATTTCTAAAATA--------ATGCATTTTAC-----ATTtctcatggtgagaatttcaagcaccagagcctggacattggagaagatagctttgggaagaaggagggag--gcctcctaatgcctttgaagttccacaacaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCGC-TGGTAGGTTTACATGTACTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1904704 329 - 8458610 CCCTCTTTGGCAAGAAGTC-CGTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTCTCCTTCTCA-TTTGTGTACATTAAaacataattaatttttaagtagccca--gcgttactttgtatttctaaaata--------atgcattttac-----atttctcatggtgagaatttcaagcaccagagtctggacattggagaagatagctttgggaagaaggagggag--gcctcctaatgcctttgaagttccacaacaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCGC-TGGTAGGTTTACATGTACTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64860447 329 + 75148670 CCCTCTTTGGCAAGAAGTC-CGTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTCTCCTTCTCA-TTTGTACACATTAAAACATAATTAATTTTCAAGTAGCCCA--GTGTTACTTTGTATTTCTAAAATA--------ATGCATTTTAC-----atttctcatggtgagaatttcaagcaccagagcctggacattggagaagatagctttgggaagaaggagggag--gcctcctaatgcctttgaagttccacaacaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCAC-TGGTAGGTTTACATGTACTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2090051 329 + 4244037 CCCTCTTTGGCAAGAAGTC-CGTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTCTCCTTCTCA-TTTGTGCACATTAAAACATAATTAATTTTTAAGTAGCCCA--GCGTTACTTTGTATTTCTAAAATA--------ATGCATTTTAC-----ATTtctcatggtgagaatttcaagcaccagagtctggacattggagaagatagctttgggaagaaggagggag--gcctcctaatgcctttaaagttccacaacaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCGC-TGGTAGGTTTACATGTACTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2111790 329 + 4569836 CCCTCTTTGGCAAGAAGTC-CCTCT---TCTTGCTCTGTGTGCATGCAGTGATACAGCTCCTGGCCTCTCCTTCTCA-TTTGTACACATTAAAACATAATTAATTTTCAAGTAGCCCA--GTGTTACTTTGTATTTctaaaaga--------atgcattttac-----atttctcatggtgagaatttcaagcaccagagcctggacattggagaagatagctttgggaagaaggaggaag--gcctcctaatgcctttgaagttccacagcaaggaa------ggtggccTCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATTGC-TGGTAGGTTTTCATGTACTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076489 325 - 159171411 CCCTCTTTGGCAAAAAGTC-CATCT---TCTTGATCTGTGTGCATGCAACGATACTGCTCCTGGCCTCTCCTTGCCA-TTCATACACATTAAAATATAATTAATTTTCAAGTAGCCTA--GTGTTACTTCATATTTCTAAAAGA--------ATACATTTTAT-----ATTTCTCATGGTGAGAATTTCAAGCACCCGAGCCTGGACATTGGAGAAGATGACTTCGGGAAGAAGAAGGGAG--GCCTCCCAATGCCTTTATAGTCCCACAAC----AA------GGTGGCATCAGCAGAAGACCTGTCCTATGTCCACTCCATGGTTAAGCATCAC-TGGTGAGTTTGCATGTGATCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1795433 325 + 3513951 CCCTCTTTGACAAAAATTC-TATCT---TCTTGATCTGTGTTTACGCAACGATACCGCTCCTGGCATCTCCTTGCCA-TTCATACACATTAAAATATAATTAATTTTCAAGTAGCCCA--GCGTTACTTCGTGTTTCTAAAAGA--------ATACATTTTAT-----atttctcatggtgagaatttcaagcaccagagcctggacattggggaagatgactttgggaagaaggagggag--acctcccaatgcctttatagtcccacaac----aa------ggtggccTCAGCAGAAGACCTGTCGTATGTCCACTCTATGGTTAAGCATCAC-TGGTGAGTTTGCATGTGATCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1844327 326 + 1920343 CCCTCTTTGGCAAAAAGTC-CATCT---TCTTGATCTGTGTGCATGCCATGATACCACTCCTGGCATCTGCTTGCCATTTCATACACATTAAAATATAATTAATTTTCAAGTAGCCCA--GTGTTACTTCGTGTTTCTAAAAGA--------ATACATTTTAT-----ATTtctcatggtgagaatttcaagcaccagagcctggacattggggaagatgattttggggagaaggagggag--gcctcccaacgactttatagttccacaac----aa------ggtggcATCAGCTGAAGACCTGTCGTATGTCCACTCCATGGTTAAGCATCAC-TGGTGAGTTTGCATGTGATCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6959158 325 - 7032639 CCCTCTTTGGCAAAAAGTC-CATCT---TGTTGATCTGTGTGCATGCAACGATACTGCTCCTGGCCTCTCCTTGCCA-TTCATACACATTAAAATACAATTAATTTTCAAGTATCCCA--GTGTTACTTTGTGTTTCTAAAAGA--------ATACATTTTAT-----ATTtctcatggtgagaatttcaagcaccagagcctggacactggggaagatgactttgggaagaaggagggag--gcctcccaatgcctttatagtcccacaac----aa------ggtggTATCAGCAGAAGACCTGTCCTATGTCCCCTCCATGGTTAAGCATCAC-TGGTGAGTTTGCATGTGATCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35884942 327 - 65901067 CCCTCTTTGGCATAATATC-AGTCT---TCTTGCTCTGTGTGCAACCAACGATACTACTCCTGGCCTCTCCTTGCTA-ATTAGACACATTAAAATATACTTAATCTACAAGTGACTCAATATGTTACTTTGCAATTCTAAAAGA--------GTACGTTTTCC-----ACTTTTCCtggtgagaatttcaggcaccaggacctggccatcagggaagatggtttggga----aggagggag--gcctcctaatacctttaaagtcctgccccagggag------ggtggcctTAGCAGAAGACCTGTCCTAGCTCCACTCCATGGTTGAGTAGCAC-TGGTGAGTTTGCATGTGATCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2971754 328 + 8555354 CCCTCTTTGGCATAACGTC-AGTCT---TCTTGCTCTGTGTGCAACCAACGATACTATTCCTGGCCTCTCCTTGCTA-ATGGTACACATGAAAATATACTTAATATGCAAGTGGTTCAATATGTTACTTTGCATTTCTAAAAGA--------ATATGTTTTCC-----ATTTTTCCtggtgaaaatttcaggcactaggacctggccatcagggaagatggtttgggg---caggagggag--gcctcctaatgcctttaaagtcctgccccagggag------ggtggcctTAGCAGAAGACCTGTCCTAGCTCCACTCCATGGTTGAGTATCAC-TGGTGAGTTTGCATGTGATCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22780072 322 + 28711273 TCTTAATTAGCATAAAGTCAAGTCT---TCTTGCCCCTTGTGCAACCAGTGATACTACTCCGGGCTTCTAGCTGACA----------ATTAAAATACCTTTAATCTTCAAGTGGCCCAATATGTCACTTTACATTTCTAAAAGA--------ATTCATTTTAC-----atttttcatggtgagaatttcagacaccaggacctggccttgagggaagatggtttggaaaagaaggagggag--gcttcctaatgccttcaaagtcctgccacagggag------ggtggcctaAGCAGAAGACCCATCCTGTCTGCACTCCATGGTTAAGTACCAC-TGGAGAGTTTGCATGTGA-CT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22049836 316 - 122082543 CCCTTTTTGATATGAGA---AATCT---TCTTGCT-------TGTCCGGTGATACAATTCATGACCTTTAACTGCTC-CTTGTGTACAGAAACATGTAATAAATGTGTGAGGAGCCCAATGTATTATCTTACATTTTCAAAAGA--------ACACAGCTTACACATGATATGTCCTGATGAGAATTTCAAACAGTAGATTCTGGCTACCATA-AACACTACTTTGGGAAAAAGAAGGGAG--GCTTCT---TGGCTTTAAAG-------ACAGGGAG------GGTGGCTCCAGCCAAAGCCTTGCCCTGACTTCACTCTATGGTTAAATACTAC-TGCTGAGTTTGTGTGTGATCT i mm10.chr11 I 285 C 0 s canFam3.chr9 21391229 327 + 61074082 CTCTTTCAGGCAA-----T-CATCTGTATCTTGGTCTGTGTGTGCCCAGTGACAGCACTCCTGGCCTCCCGTTGCCA-TTCGTCTACATTAAAATAGAATAAATCTGTAAGTGGCCCAATATGTTACTTTGCATTTTCCAAAGA--------ATGCAAAATAC-----ATTTCTCATGGTGAGAACTTTAAGTTCCAGTACCTGGCCATCAAAGAAGACAGTTTTCGAAAAGAATGGGGAG--ACTTCCTAATACCTTTAAAGTCCTGCCATGGGGAG------GATAGTCTTGGT---AGGTCTGCTCTGATTCCACTCTGTGGTTAAGTGTCACTTGATAAGTTTGCATGTGATCT i canFam3.chr9 I 9 C 0 s dasNov3.JH570468 364652 303 - 852752 --------------------------------GCTC-GTGTGTGTCCCGGGATACCACTCCTGCCCTCCCCTTGCCA-TTGGTACACATCGAAGAATAATTAATATGTAAGTGGCTCAATATGTTA-TTTGCATTTCCACAGTAGAGTTTGGATGAATTTTGC-----ATTCCTCACGGTGCACATGTGAGGTGGTGGCATCTGGCCAGTA--------------GGAAAGGAGCAGGGAGAAGCCTCCTAACGCCCTCAGTGTACTGCCCCTGGGGGTAGGGTGGTGGTCCCAGAAAAAGACCTGCCCTGACTCCACTCCACGGATAAGCGTCAC-TGGTGAGTTTGGGTGTGATTT i dasNov3.JH570468 C 0 I 7825 a score=6582362.000000 s hg38.chr17_GL383564v2_alt 67532 440 + 133151 C-TTCTATGGAAATAGCCCGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCATAGCATCTGCCGCTATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGACTTACTTGTCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCATGTAAAGATAAGAATTCACAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTCTTTTCTCCATAGACCCAAGTTCTTCCAACTAT------------TAGTACATAATGGCCAAGTAGCTGTGCAGAAATTATAGTTACTTC------TACTCAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCTAAA-CTCTGACCTCCACTTTTAAAGACACAAGGAT s panTro5.chr17 16254117 440 + 83181570 C-TTCTATGGAAATAGCCCGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCATAGCATCTGCCGCTATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGACTTACTCGTCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCATGTAAAGATAAGAATTCACAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTCTTTTCTCCATAGACCCAAGTTCTTCCAACTAT------------TAGTATATAATGGCCAAGTAGCTGTGCAGAAATTATAGTTACTTC------TACTCAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCTAAA-CTCTGACCTCCACTTTTAAAGACACAAGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16161588 440 + 83442489 C-TTCTATGGAAATAGCCCGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCATAGCATCTGCCGCTATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGACTTACTCGTCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCATGTAAAGATAAGAATTCACAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTCTTTTCTCCATAGACCCAAGTTCTTCCAACTAT------------TAGTATATAATGGCCAAGTAGCTGTGCAGAAATTATAGTTACTTC------TACTCAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCTAAA-CTCTGACCTCCACTTTTAAAGACACAAGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3996625 439 + 4267968 C-TTCTATGGAAATAGCCCGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACGTCTTAAGTCCAGAAGCCTCAACCATAGCATCTGCCGCTATTACAT-GGCATGT---A-TAGAACCTTTCGGTTTGTTAGGATTTGACTTGCTCGTCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCATGTAAAGATAAGAATTCACAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAACTAATTGAAACTTGGCTCTTTTCTCGATAGACCCAAGTTCTTCCAACTAT------------TAGTATATAATGGCCAAGTAGCTGTGCAGAAATTATAGTTACTTC------TACTCAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCTAAA-CTCTGACCTCCACTTTTAAAGGCACAAGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1976994 440 - 2193130 C-TTCTATGGAAATAGCCTGGGCTTCCCTAATAAATAGCGTCCTTAAACCTTAACTGCAATTTGCTCACGTCTTAAGACCAGAAGCCTCAACCACAGCATCTGCCGCAATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCATGTAAAGATAAGAATTCGCAG--TACACAGCAAGTGGAGTAAAT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTCTTTTCTCAATAGACCCAAGTTCTTCCAAGTAT------------TAGTATATAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTC------TACTCAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCTAAA-CTCTGACCTCCACTTTTAAAGACACAAGGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049066 436 - 77216781 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCATATCTTAAGACCAGAAGCCTCAACCACATCATCTGCCGCAATTACGTGGGC-------A-TAAAACCTTTCTGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCACGTAAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTGTTTTCTCAAAAGACCCAAGTTCTTCCAACTAT------------TAGTATACAATGGCCAATTAGCTGTGCAGAAATCATAGTTACTTT------TACTTAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTAACCTCCACTTTTAAAGACACAAGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27961675 436 - 80997621 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCATATCTTAAGACCAGAAGCCTCAACCACATCATCTGCCGCAATTACGTGGGC-------A-TAAAACCTTTCTGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCACGTAAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTGTTTTCTCAAAAGACCCAAGTTCTTCCAACTAT------------TAGTATACAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTT------TACTTAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTAACCTCCACTTTTAAAGACACAAGGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2017924 436 + 10377808 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCATATCTTAAGACCAGAAGCCTCAACCACATCATCTGCCGCAATTACATGGGC-------A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCACGTAAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTGTTTTCTCAAAAGACCCAAGTTCTTCCAACTAT------------TAGTATACAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTT------TACTTAACATGT-------GGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTAACCTCCACTTTTAAAGACACAAGGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905033 436 - 8458610 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCACATCATCTGCTGCAATTACATGGGC-------A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCGCCCACGTAAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTGTTTTCTCAAAAGACCCAAGTTCTCCCAACTAT------------TAGTATACAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTT------TACTTAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTAACCTCCACTTTTAAAGACACAAGGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64860776 440 + 75148670 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCACAGCATCTGCCGCAATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCACGTTAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTGTTTTCTCAAAAGACCCAAGTTCTTCCAACTAT------------TAGTATACAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTT------TACTTAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTAACCTCCACTTTTAAAGACACAAGGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2090380 436 + 4244037 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCACATCATCTGCCGCAATTACATGGGC-------A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCATATAAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTCAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGCTGTTTTCTCAAAAGACCCAAGTTCTTCCAACTAT------------TAGTATACAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTT------TACTTAAGATGT-------AGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTAACCTCCACTTTTAAAGACACAAGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2112119 440 + 4569836 C-TTCTATGGAAATAGCCTGGGCTTCCATAATAAATAGCATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCACAGCATCTGCCGCAATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCGTGTTTAATGAAGGGCCATTGAACAGAGACAATAGCATCACCCACGTAAAGGTAAGAATTCGCAG--TACACAGCAAGTGGAGTAAGT-AAAAAGCAATTGCCTTCCAGACTTTGTGAGAAGCTAATTGAAACTTGGTTGTTTTCTCAAGAGACCCAAGTTCTTCCAACTAT------------TAGTATACAATGGCCAAGTAGCTGTGCAGAAATCATAGTTACTTC------TACTTAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCCAAA-CTCTGACCTCCACTTTTAAAGACACAAGGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46076814 437 - 159171411 C-TTCCATGGAAATAGCTTTGGCTTCCATAATAAATAGCATCCTTACTCCTCAACTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCACAGCATCCACCACAATTACATGGGCATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTATTGAAGGGTCATTGAACAGAGACAATTGCATCACCCATGTAAAGGTAAGAATTCACAG--TACACAGCAAGTGGAATAAAG-AAAAA-CGATTGCCTTCCAGACTTCCTGAGAAGCGAATTGAAACTTGGCTCTTTTCTCAATAGACCCACACTCTTCCAACTGT------------TATTATATGATGGCCAAGTGGCTGTGCAGAAA--ATAGTTACTTC------TATTTAAGATGT-------GGGAATAGTTGTGTTT-----------------------------TCTAAA-CTCTGACCTCCATTTTTAAAGACACAAGGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1795758 436 + 3513951 C-TACCATGGAAATAGCCTTGGCTTCTGTAATAAATAGCAACCTTACACCTCAATTACAATTTGCTCATATCTTAAGACCAGAAGACTCAACCACAGCATCCACCACAATTACAAGGGCATGT---A-TAAAACCTTTTGGTTTGTTAGGATTTGATTTGCTCATCATGTTTATGGAAGGGTCATTGAACAGAGACAATTCCATCACCCATGTAAAGGTAAGAATTCACAG--TACACAGCAAGTGGAATAAAG-AAAAAGCAATTACCTTCCAGACTTCCTGAGAAGTGAATTGAAATTTGGCTCTTTTCTCAATAGACCCACGTTCTTCCAACTAT------------TACTACACGATAGCCAAGTAGCTGTGCAGAAA--ATAGTTACTTC------TACTTAAGATGT-------GGGAATA---GTGTTT-----------------------------TCTAAAGTTCTGACCTCCATTTTCAAAGACACAAGTAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1844653 428 + 1920343 C-TTCCATGGAAATAGCCTTGGCTTCCATAATAAATAGCATCCTTACACCTCAATTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAACCACAGCATCCACCACAATTACATGGGTATGT---A-TAAAACCTTTCGGTTTGTTAGGATTTGATTTGCTCATCATGTTTATGGAAGGGTCATTGAACAGAGACAATTCCATAACCCATGTAAAGGTAAGAATT---------CACAACAAGTGGAATAAAG-AAAAAGCAATTGCCTTCCAGACTTCCTGAGAAGCTAATTGAAACTTGGCTCTTTTCTCAATAGACCCACGTTCTTCCAACTAT------------TATTATATGATGGCCAAGTAGCTGTGCAGAAA--ATAGCTACTTC------TACTTAAGATGT-------GGGAATA---GTGTTT-----------------------------TCTGAA-CTCTGATCTCCATTTTTAAAGACACAAGTAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6959483 432 - 7032639 C-TTCCATGGAAATAGCCTTGGCTTCCGTAATAAATAGCATCCTTACACCTCAATTGCAATTTGCTCACATCTTAAGACCAGAAGCCTCAAGCACAGCATCCACCACAATTACATGGGCATGT---A-TACAATCTTTTGGTTTGTTAGGATTTGATTTGCTCATCATGTTTATTGAAGGGTCATTGAACAGAGACAATTCCATCACCCATGTAAAGGTAAGAATTCACAG--TACACAGCAAGTGGAATAAAG-AAAAAGCAATTGCCTTCCAGACTTCCTGAGAAGCTAATTGAAACTTGGCTCTTTTCTCAATAGACCCATGTTCTTCCAAC---------------TATTATATGATGGCCAAGTAGCTGTGCAGAAA--ATAGTTACTTC------TACTTAAGATGT-------GGCAGTA---GTGTTT-----------------------------TCTAAA-CTCTGACCCCCATTTTTAAAAACACAAGTAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35885269 431 - 65901067 CTTTCCACAGAAACAGCCTTGGCTTCCATAATAAATAGTATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGACCAAAAGCCTCAACCACAGCGTCTGCCACAATTACATGGGTAGGT---ATTAAAACCTTTCTGTTTGTTAGGGTTGGATTTGCTCATCATGTTT-----------ATTGACTAGAGACAATAACATTACTTATGTAAAGGTAAGAATTCACAC--TGCACAGTAAGTGGAATAAAT-AAAAAACAATTGCCTTCTAGACTGCCTGGGAAGCTAACTGAAACTTGGCTCTTTTCTTAATAGACCCAAGTCCTCTCAACCAT------------TGTTATCTGATGGCCACGTAGCTGCGCAGAAATCACGGTTACTTC------TACTCAAGATGT-------GGGAATGGTAGTGTTT-----------------------------TCTAAA-CTCTGCCCACCACCTTGAAAGACACAAGGAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972082 440 + 8555354 CTTTCCACAGAAATAGCCTTGGCTTCCTTAATAAATAGTATCCTTAAACCTCAACTGCAATTTGCTCACATCTTAAGGCCAGAAGCCTCAACCACAGCGTCTGCCACAATTACATGGGCAGGT---A-TAAAACCTTTCTGTTTGTTAGGATTTGATTTGCTCATCACGTTTA-TGAAGGGTCATTGACCAGAGACAATAACATCACTTATGTAAAGGTAAGAATTCACAC--TGCACAGTAAGTGGAATAAAT-AAAAGGCAATTGTCTTCTAGAGCTCCTGGGAAACTAATTGAAACTTGGTTCCTTTCTCAATACACCCAAGTCCTCTCAACTAT------------TGTTATCTAATGGCCATGTAGCTGTGCAGAAATCACGGTTACTTC------TACTCAAGATGT-------GGGAATAGTAGTGTTT-----------------------------TCTAAA-CCCTGCCCACTGCCTTCAAAGACACAAGGAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22780394 447 + 28711273 CTTTCCACAGAAATAGCCATGGCTTCCATAATAAATAGTATCCTTAAGCCTCAACTGCAATTTCCTCACATCTTAAGACCAGAAGCCTCAACCACAGCGTCTGCCACAATTACATGGGCAGGT---A-TAAAATCTTTCTGTTTGTTAGGATTTAATTTGCTCATCATGTTTATTGAAGGGTTGTTGACCAGAGATGATAGTATTACTTATATAAAGGTAAGAATGTACAT--TGCACAATAAGTAGAATAAATAAAAAAATAATTGCCTTTCAGACTTCCTGGAAAGCTAACTGAAACTTGGCTCTTTT-TTAAGAGACCCAAGTCCTTTCAACCAT------------TGTTAG-TATTGGCCATGTATCTGTGCAGAAGTCATGGTTACTTC------TACTTAAGATGTAAAAAGCGTAAATAATAGTGTTT-----------------------------TCTAAA-CTCTGCCCACCATCTTCAAAGATGTTAGGTT i otoGar3.GL873537 C 0 I 1237 s mm10.chr11 22050152 481 - 122082543 C-TGACATGGAAATAGTCTTGGCTTCTATAATGAATAGTGTCCTTAAACCTCAAATGTCGTTAGCTCACATCTTGAGACCAAAAGCTTCAGCCACAGCGTCTGACACAATGATACAAGTAACT---A-TAAAACCTTTCTGGTTGTTAGGATTTCGTCTGTCCATCATGTTTATTGAAGGGTAATTGTCAAGAGACAATATAATCATTTATATAAAGTTGAGAACACACAGTATATACAGTAAATAGAATAAGT-GAGAAGCACTCATTTGTAAGAATTCCTAGGAAACAAAT----ATTT--TTATTTTCTTAACAGATCAACATTCTTTCAGCCACatatataacatataatatatattaaataatataCCACATATACAGTATA--TAATATATAAAATACTCAGGATAT-------ATATATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTAAA-TTCTACCATGTACTTTTGAATGTACAGTAAT i mm10.chr11 C 0 C 0 s canFam3.chr9 21391556 442 + 61074082 C-TCCCACAGAAATAGCCTTGGCTTCCATAATAAATAGTATCTTTAAACCTCAACTGCAATTTTCTCACATCTGGTGACCAGAAGCCTTA-CCACGGCGTCTGCCACAATTACATGGGCAGGTATAA-TAAAATCTTTTTGTTTGTTAGGATTTGATTTGCTCATCATTTTTATTGAAGGGTCATTGACTAGAGACAATGGCATTGCTTATGTAAAGGTAAGGATTCACGG--CCCACAGTAAGTGGAATAAAT-AAAAAGCAACTGCCTTCTGTAATTCCTGGGAAATGACTTGAAACTTGGCTCTTTTCTCAATAAATCCAAATCCTCTCAGTTAT------------TTTAATCTAATGACCATGCAGCTATGCAACAATCATGATTATTTC------TACTCCAGAAGT-------GGGAGTAGTAATGTTT-----------------------------TCTAAA-CTCTGACCTCCACTTTTGAAGATACAAGGAT i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 364955 7825 - 852752 I a score=1646035.000000 s hg38.chr17_GL383564v2_alt 67972 121 + 133151 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCTGTGGACATATTTACCAGTCTGTGACACACTATTCCTTCC--------------CTTTTCTTTAA------------------------AAAGTG s panTro5.chr17 16254557 121 + 83181570 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCTGTGGACATATTTACCAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162028 121 + 83442489 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCTGTGGACATATTTACCAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997064 121 + 4267968 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCTGTGGACATATTTACCAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977434 120 - 2193130 ACTTAT-TCTGGATTATTCCACTGTGATTGAGGTAGAAGCTGCAGCAATGGTTATAAGGATCCCTGTGAACATATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049502 121 - 77216781 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTATAGCAATGGTTATAGGGATCCCCATGGACACATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962111 121 - 80997621 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTATAGCAATGGTTATAGGGATCCCCATGGACACATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018360 121 + 10377808 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTATAGCAATGGTTATAGGGATCCCCATGGACACATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905469 121 - 8458610 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTATAGCAATGGTTATAGGGATCCCCATGGACACATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861216 121 + 75148670 ACTTATCTCTAGATTATTCCACTGTGACTGAGGTAGAAGCTATAGCAATGGTTATAGGGATCCCCATGGACACATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2090816 121 + 4244037 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTATAGCAATGGTTATAGGGATCCCCATGGACACATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2112559 121 + 4569836 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTATAGTAATGGTTATAGGGATCCCCATGGACATATTTACTAGTCTGTGACACACTATTCCTTTC--------------CTTTTCTTTAA------------------------AAAGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077251 122 - 159171411 ACTTATCTCTGGATTATTCCATTGTAACTGAGGTAGAAGCTACAGCAATGGGTATAGGGATTCCTGTGAATATATTTACTAGTCTATGAGACACTATTCCTTTC---------CATTTTTTTTTT----------------------------AAAGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796194 143 + 3513951 ACTTATCTCTGGATTATTCCACTGTGACTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCCATGGATATATTTACTAGTCTATGACACACTATTCTTCCCCCC-----TCAttttttttttcttt-----------ttttcttttttAAAAAGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845081 135 + 1920343 ACTTATCTCTGAATCATTCCACTGTGACTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCCTTGGATATATTTACTAGTCTATGACACACTATTCCTCCCCCCACCCGCTATTTTTTTTTTTTTT------------------------TAAGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6959915 140 - 7032639 ACTTATCTCTGGATTATTCCACTGTGATTGAGGTAGAAGCTACAGCAATGGTTATAGGGATCCCCGTGGATATATTTACTAGTCTATGACACACAATTCCTTCCCCC------CGCCCCCTTTTTTTTTAAAAAAAAAAA-------------AAAGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35885700 116 - 65901067 ACTTCTCTCTAGATTATTTTACTCTGACTGAGGTAGAGGGTATAGAAATGGTGATGTGGATCCCCATGGACATGT-----AATCAACAACACTCTATTTCTTTC--------------CTCTTCTTTAA------------------------AAAGCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972522 116 + 8555354 ACTTCCCTCTAGATTATTCCACTCTGAGTGAAGTAGAGGGTATAGCAACAGTGATGTGGATCCCCATGGACATAT-----AATCTACAACACTCTATTTCTTTC--------------CTCTTCTTTAA------------------------AAAGCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782078 116 + 28711273 ACTTACCTCTGGATTATTTCACTCTGACTGAGGTAGAGGCTATAGTAATGGTGGCATGGATCCCCACAGACATGT-----AATCTACAACATTCTCTTTCTTTT--------------CTGTTCTTTAA------------------------AAAGTA i otoGar3.GL873537 I 1237 C 0 s mm10.chr11 22050633 116 - 122082543 -CTTTTCCATGGATTATTATGTTCTGACCAAGGTGGAAACTATAGCAATAGTTA-----ATCTTCATGGATGCATATTCTAGTTTGCAACAAATGATTCCTTTA--------------TTACTCTTTAAA-----------------------AAAGAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21391998 116 + 61074082 ACTTACCTCTGGATCATTTTGCT----CTGAGGTGGAAGCTGCTGTAATGGTT-TAGGGATCCCCATGGGCATTTTTGCCAATCTACAACATAGCGTTCCTTTC--------------TTATTCTTTAA------------------------AAACTA i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 364955 7825 - 852752 I a score=221415.000000 s hg38.chr17_GL383564v2_alt 68093 15 + 133151 CCATTGTC--AGATTTT- s panTro5.chr17 16254678 15 + 83181570 CCATTGTC--AGATTTT- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162149 15 + 83442489 CCATTGTC--AGATTTT- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997185 15 + 4267968 CCATTGTC--AGATTTT- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977554 15 - 2193130 CTGTTGTC--AGATTTT- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049623 15 - 77216781 CCGTTGTC--AGATTTT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962232 15 - 80997621 CCGTTGTC--AGATTTT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018481 15 + 10377808 CCGTTGTC--AGATTTT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905590 15 - 8458610 CTGTTGTC--AGATTTT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861337 15 + 75148670 CCGTTGTT--AGATTTT- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2090937 15 + 4244037 CCGTTGTC--AGATTTT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2112680 15 + 4569836 CCGTTGTC--GGATTTT- i colAng1.NW_012122154v1 C 0 I 321 s calJac3.chr5 46077373 15 - 159171411 CCATTGTC--AGATTTT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796337 15 + 3513951 CCATTGTC--AGATTTT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845216 15 + 1920343 CCATTGTC--AGATTTT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960055 15 - 7032639 CCATTGTC--AGATTTT- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35885816 16 - 65901067 CCATTATCT-AGATTTT- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972638 16 + 8555354 CTATTATCT-AGATTTT- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782194 16 + 28711273 TCACTATCT-AGATTTT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22050749 17 - 122082543 GCATTGTCTGGGATTTT- i mm10.chr11 C 0 C 0 s canFam3.chr9 21392114 16 + 61074082 CCATTGTCT-AGATTTT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 372780 16 - 852752 cCATTGTC--TATTTTTT i dasNov3.JH570468 I 7825 C 0 a score=37690.000000 s hg38.chr17_GL383564v2_alt 68108 2 + 133151 TC s panTro5.chr17 16254693 2 + 83181570 TC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162164 2 + 83442489 TC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997200 2 + 4267968 TC i gorGor5.CYUI01015385v1 C 0 I 1 s nomLeu3.chrUn_GL397460_1 1977569 2 - 2193130 TC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049638 2 - 77216781 TC i rheMac8.chr16 C 0 I 1 s macFas5.chr16 27962247 2 - 80997621 TC i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 2018496 2 + 10377808 TC i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1905605 2 - 8458610 TC i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64861352 2 + 75148670 TC i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2090952 2 + 4244037 TC i manLeu1.NW_012106252v1 C 0 I 1 s calJac3.chr5 46077388 2 - 159171411 TC i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1796352 2 + 3513951 TC i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1845231 2 + 1920343 TC i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6960070 2 - 7032639 TC i aotNan1.NW_018502359v1 C 0 I 1 s micMur3.chr16 35885832 2 - 65901067 TC i micMur3.chr16 C 0 I 1 s proCoq1.NW_012135969v1 2972654 2 + 8555354 TC i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22782210 2 + 28711273 TC i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22050766 1 - 122082543 -C i mm10.chr11 C 0 I 1 s canFam3.chr9 21392130 2 + 61074082 TC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 372796 2 - 852752 TC i dasNov3.JH570468 C 0 C 0 e colAng1.NW_012122154v1 2112695 321 + 4569836 I a score=2429682.000000 s hg38.chr17_GL383564v2_alt 68110 163 + 133151 -C--TTTTGAAGCTTGGGACGTAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTATTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-AT-GGTTTGGT-------------ACTGATTTTAAACCAATATGCCCATGCCACATCTCACTGA s panTro5.chr17 16254695 163 + 83181570 -C--TTTTGAAGCTTGGGACGTAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTATTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-AT-GGTTTGGT-------------ACTGATTTTAAACCAGTATGCCCATGCCACATCTCACTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162166 163 + 83442489 -C--TTTTGAAGCTTGGGACGTAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTATTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-AT-GGTTTGGT-------------ACTGATTTTAAACCAGTATGCCCATGCCACATCTCACTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997203 163 + 4267968 -C--TTTTGAAGCTTGGGGCGTAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTATTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-AT-GGTTTGGT-------------ACTGATTTTAAACCAATATGCCCATGCCACATCTCACTGA i gorGor5.CYUI01015385v1 I 1 C 0 s nomLeu3.chrUn_GL397460_1 1977571 177 - 2193130 -T--CTTTGAAGCTTGGGTCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCACCTATTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTATGT-TATTTGATCTCATCCAATAGGACTGATTTTAAACCAATATGCCCATGCCACATCTCACCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049641 164 - 77216781 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTGTTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCGGCTTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i rheMac8.chr16 I 1 C 0 s macFas5.chr16 27962250 164 - 80997621 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTGTTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCGGCTTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2018499 164 + 10377808 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTGTTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCGGCTTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1905608 164 - 8458610 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTGTTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCGGCTTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64861355 164 + 75148670 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTGTTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCGGCTTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2090955 164 + 4244037 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGGACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTGTTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCGGCTTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i manLeu1.NW_012106252v1 I 1 T 5653 s colAng1.NW_012122154v1 2113016 164 + 4569836 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACACAAGGTAATTAGAGAAAAGCTAATGAATTCAGCTATTTGCTTTATATTATTTGATCTCATCCAATAGGACTTTA-ATCGGCCTGGT-------------ACTGATTTTAAACGAATATGCCCATGCCACATCTCACTGA i colAng1.NW_012122154v1 I 321 C 0 s calJac3.chr5 46077391 159 - 159171411 -C--TTTTGAAGCTTGGGGAATAGAAGAAGGAGAGAAGAACAGAAGGAAATTAGAGAAAAGTTAATGAATTCAGCTGTTTGCTTTATGTT-----ACCTCATCCAATTGGACTTTA-ATCAGTTTGGT-------------ACTGATTTTAAACCAATATGCCCATGCCAAATCTCACTGA i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1796355 164 + 3513951 -C--TTTTGAAGCTTGGGGCATAGAAGAAGGAGAGAAGAACAGAAGGTAATTAGAGAAAAGTTAATGAATTCAGCTATTTGCTTTATGTTATTTGATCTCATTCAATAGGACTTTA-ATCAGTTTGCT-------------ACTGATTTTAAACCAATATGCCCACGCCAAATCTCACTGA i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1845234 164 + 1920343 -C--TTTTGAAGCTTGGGGCCTAGAAGAAGGAGAGAAGAACAGAAGGTAAATAGAGAAAAGTTAATGAATTCAGTTATTTGCTTTATGTTATTTGATCTCATCCAATAGGACTTTA-ATCAGTTTGGT-------------ACTGATTTTAAACCAATATGCCCATGCCAAATCTCACTGA i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6960073 158 - 7032639 -C--TTTTGAAGTTTGGGGCATAGAAGAAGGAGAGAAGAACAGAAGGTAATTTGAGAAAAGTTAATGAA------TATTTGCTTTGTGTTATTTGATCTTATCCAATAGGACTTTA-ATCAGTTTGGT-------------ACTGATTTTAAACCAATATGCCCATGCCAAATCTCACTGA i aotNan1.NW_018502359v1 I 1 C 0 s micMur3.chr16 35885835 164 - 65901067 -T--TTTTGAAGCTTGGAGCATAGAAGGAGGGGAAAAGGACAGGAGGCAATTCTAGAAGAGCTAATGAATTTAGCTATTTGCTTTATGTTATTTGATCTCAGCCAATAAGACTTTA-ATCGGTTTAGT-------------ACTGATTTTAAACCAACACCCCCATTTCACATCTCACAGA i micMur3.chr16 I 1 C 0 s proCoq1.NW_012135969v1 2972657 163 + 8555354 -T--TTTTGAAGGTTGGGGCATACAAGGA-GGGAGAAGAACAGAAGGTAATTCTAGAAAAGCTAATGAATTTAGCTATTTGCTTTATGTTATTTGATCTCAGCCAATAAGACCTTA-ATCAGTTTGGT-------------ACTGATTTTATACCAACACGTCCACTTCACACCTCATGGA i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22782213 166 + 28711273 -TTATTTTATAGCTTGGGGCATAGAAAGAGAGGAGAAGGGTAGGAGGCAATTCAGGAAAAGCTAATGTATTTAGCTATTTGCTTCATGCTATTTGATCTCAGCCAATAGGATTTTA-ACAGGTTTGGT-------------AGTGATTTTAAACCAACCCACCCATTTCATATCTCACTGA i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22050768 143 - 122082543 -C--TTTTGAGGTCCATAATGTAGAAAAA---GAGAAGGATGGAAGa-aattaaaaaaaaa-taataatGTCATGTATTT--TCTGGGTTGTGTGAGTTCATTTAG-----------ATCAGCTTGGT-------------ACGGA-CTTGAATCAACACACTTGGTTCATATGTCAC--- i mm10.chr11 I 1 C 0 s canFam3.chr9 21392133 145 + 61074082 -C--TTTTGAAATTTGGGGCATAGAAGAAGGGGGG---------GGGTGGAAACAGAAAAGCTAATGAATCTATCTATTTGCTTTATGTTATTTGATCTGATCCAATAGGGCTTCA-GT----TTGG--------------AATAATTTTAAATAAGCACACCCATTCCATATCTC----- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 372798 148 - 852752 TC--TTTTAGAAC-TGGGACATAGAAAGAGGGGAG---GACCGGAGACAATGAGACAAGATCAAATCAACTCAGCTATTTGCTTTATG----------TCATTCAAGAGGGTTTCA-GTCAGTTTGGT-------------TCTGGTTTTAAACCACT---TCCCTCCCACATCTTGCTGA i dasNov3.JH570468 C 0 C 0 a score=229914.000000 s hg38.chr17_GL383564v2_alt 68273 15 + 133151 TAGTGGAATCATTTT s panTro5.chr17 16254858 15 + 83181570 TGGTGGAATCATTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162329 15 + 83442489 TGGTGGAATCATTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997366 15 + 4267968 TGGTGGAATCATTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977748 12 - 2193130 ---TGGAATCATTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049805 15 - 77216781 TGGTGGAATCATTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962414 15 - 80997621 TGGTGGAATCATTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018663 15 + 10377808 TGGTGGAATCATTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905772 15 - 8458610 TGATGGAATCATTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861519 15 + 75148670 TGGTGGAATCATTTT i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113180 15 + 4569836 TAGTGGAATCATTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077550 15 - 159171411 TGGTGGAATCATTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796519 15 + 3513951 TGGTGGAATCATTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845398 15 + 1920343 TGGTGGAATCATTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960231 15 - 7032639 TGGTGGAATCATTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35885999 15 - 65901067 TGGTGGGATCATTTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972820 15 + 8555354 TGGTGGGATCATTTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782379 15 + 28711273 TGATGGGATCATTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22050911 14 - 122082543 -AGTAGAACCATTTT i mm10.chr11 C 0 C 0 s canFam3.chr9 21392278 3 + 61074082 ------------TCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 372946 15 - 852752 TGGTGGGATCATTTT i dasNov3.JH570468 C 0 C 0 e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=83486.000000 s hg38.chr17_GL383564v2_alt 68288 5 + 133151 AAAGG s panTro5.chr17 16254873 5 + 83181570 AAAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162344 5 + 83442489 AAAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997381 5 + 4267968 AAAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977760 5 - 2193130 AAAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049820 5 - 77216781 AAAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962429 5 - 80997621 AAAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018678 5 + 10377808 AAAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905787 5 - 8458610 AAAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861534 5 + 75148670 AAAGG i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113195 5 + 4569836 AAAGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077565 5 - 159171411 AAAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796534 5 + 3513951 AAAGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845413 5 + 1920343 AAAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960246 5 - 7032639 AAAGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886014 5 - 65901067 AAAGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972835 5 + 8555354 AAAGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782394 5 + 28711273 AAAGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22050925 5 - 122082543 ACAAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21392281 5 + 61074082 AAAGG i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 372961 0 - 852752 C e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=1730.000000 s hg38.chr17_GL383564v2_alt 68293 1 + 133151 -T s panTro5.chr17 16254878 1 + 83181570 -T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162349 1 + 83442489 -T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997386 1 + 4267968 -T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977765 1 - 2193130 -T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049825 1 - 77216781 -T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962434 1 - 80997621 -T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018683 1 + 10377808 -T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905792 1 - 8458610 -T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861539 1 + 75148670 -T i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113200 1 + 4569836 -T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077570 1 - 159171411 -T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796539 1 + 3513951 -T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845418 1 + 1920343 -T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960251 1 - 7032639 -T i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2972840 1 + 8555354 -C i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22050930 1 - 122082543 A- i mm10.chr11 C 0 C 0 e micMur3.chr16 35886019 0 - 65901067 C e dasNov3.JH570468 372961 0 - 852752 C e canFam3.chr9 21392286 0 + 61074082 C e otoGar3.GL873537 22782399 0 + 28711273 C e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=105215.000000 s hg38.chr17_GL383564v2_alt 68294 11 + 133151 AGAGATTCAgg s panTro5.chr17 16254879 11 + 83181570 AGAGATTCAga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162350 11 + 83442489 AGAGATTCAga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997387 11 + 4267968 AGAGATTCAga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977766 11 - 2193130 AGAGATTCAga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049826 11 - 77216781 AGAGATTCAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962435 11 - 80997621 AGAGATTCAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018684 11 + 10377808 AGAGATTCAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905793 11 - 8458610 AGAGATTCAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861540 11 + 75148670 AGAGATTCAGA i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113201 11 + 4569836 AGAGATTCAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077571 11 - 159171411 AGAGATTCAga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796540 11 + 3513951 AGAGATTCAgg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845419 11 + 1920343 AGAGATTCAgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960252 11 - 7032639 AGTGATTCAgg i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22050931 9 - 122082543 --AGAGTCAGG i mm10.chr11 C 0 I 39 e proCoq1.NW_012135969v1 2972841 0 + 8555354 C e micMur3.chr16 35886019 0 - 65901067 C e dasNov3.JH570468 372961 0 - 852752 C e canFam3.chr9 21392286 0 + 61074082 C e otoGar3.GL873537 22782399 0 + 28711273 C e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=2373643.000000 s hg38.chr17_GL383564v2_alt 68305 316 + 133151 ccgggtgcagtggctcactcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagattgagaccagcctgcccaacatagtgaaaccctgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtgcacgcctctaatcccagctactagggagggtgagacaggagaatagcttgaacctgggaggcggaggttgcagtgagctgagattgcaccactgcactgtagcctgggcaatagagcaatagagtgagactctgtctccaaa---aaaaaaaaaaaaaaaaaa s panTro5.chr17 16254890 316 + 83181570 ccgggtgcggtggctcactcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgacgtcaggagatcgagaccagcctgcccaacatagtgaaaccccgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtgcacgcctgtaatcccagctactagggagggtgagacaggagaatagcttgaacctgggaggcggaggttgcagtgagctgagattgcaccactgcactctagcctgggcaatagagcaatagagtgagactctgtctcaaaa---aaaaaaaaaaaaaaaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162361 315 + 83442489 ccgggtgcggtggctcactcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgacgtcaggagatcgagaccagcctgcccaacatagtgaaaccccgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtgcacgcctgtaatcccagctactagggagggtgagacaggagaatagcttgaacctgggaggcggaggttgcagtgagctgagattgcaccactgcactctagcctgggcaatagagcaatagagtgagactctgtctacaaa---aaaaaaaaaaaaaaaaa- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997398 316 + 4267968 ccgggtgtggtggctcactcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagatcgagaccagcccgcccaacatagtgaaaccccatctctactaaaaatacaaaaattagccagacacattacaggtg----gtgcacgcctgtaataccagctactagggagggtgaaacaggagaatagcttgaacctgggaggtggaggttgcagtgagctgagattgcaccactgcactctggcctgggcaatagagcaatagagtgagactctgtctccaaa---aaaaaaaaaaaaaaaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1977777 308 - 2193130 ccgggcgcggtggctcactcctgtaatcccagcaatttgggaggctgaggagggtggatcacctgaggtcaggagatcgagaccagcctggccaacatagtgataccccgactctactaaaaatacaaaaattagccaggcacatcacaggtg----gtgcgtgcctgtaatcccagctactagggagggtgagacaggagaatcgcttgaacctgggaggtggaggttgcagtgagccgagattgcaccactgcactctagcgtgggcaacagagcaatagagtgagactccgtctcaaaa---aaaaaaaaTA-------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30049837 315 - 77216781 CAAggcacggtggctcactcctgtaatcccaacactttgggaggccgaggcggatggatcacctgagatcaggagattgagaccagcctgggcaacattgggaaa-cctgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtacgcacctgtaatcccagctactagggagggtgagacaggagaattgcttgaacctgggaggtggagattgcagtgagccgagattgcacaactgcactgtagcctgggcaatagagcagcagagcgagactccgtctccaaa---aaaaaaaaaaataaaata i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962446 315 - 80997621 CAAggcacggtggctcactcctgtaatcccaacactttgggaggccgaggcggatggatcacctgagatcaggagattgagaccagcctgggcaacattgggaaa-cctgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtacgcacctgtaatcccagctattagggagggtgagacaggagaatcgcttgaacctgggaggtggagattgcagtgagccgagattgcacaactgcactgtagcctgggcaatagagcagcagagcgagactccgtctccaaa---aaaaaaaaaaaaaaaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2018695 315 + 10377808 CAAggcacggtggctcactcctgtaatcccaacactttgggaggccgaggaggatggatcacctgagatcaggagattgagaccagcctgggcaacattgggaaa-cctgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtatgcacctgtaatcccagctactagggagggtgagacaggagaatcgcttgaacctgggaggtggagattgcagtgagccgagattgcacaactgcactgtagcctgggcaatagagcagcagagcgagactccgtctccaaa---aaaaaaaaaaaaaaaaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1905804 310 - 8458610 CAAggcacggtggctcactcctgtaatcccaacactttgggaggccgaggcggatggatcacctgagatcaggagattgagaccagcctgggcaacattgggaaa-cctgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtgcgcgcctgtaatcccagctactagggagggtgagacaggagaatcgcttgaacctgggaggtggagattgcagtgagccgagattgcacaactgcactgtagcctgggcaatagagcagcagagtgagactctgtctt--------aaaaaaaaaaaaaaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861551 313 + 75148670 CAAggcacggtggctcactcctgtaatctcaacactttgggaggccgaggcagatggatcacctgagatcaggagattgagaccagcctgggcaacattgggaaa-cctgtctctactaaaaatacaaaaattagccaggcacattacaggtg----gtgcgcgcctgtaatcccagctactacggagggtgagacaggagaatcgcttgaacctgggaggtggagattgcagtgagccaagattgcacaactgcactgtagcctgggcaatagagcagcagagtgagactccgtctc--aa---aaaataaataaataaaTa i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113212 301 + 4569836 CGAggcacggtggctcactcctgtaatcccaacactttgggaggccgaggcgggtgcatcacctgagatcaggagattgagacctgcctgggcaacattgggaaa-cctgtctctactaaaaatacaaaaattagccagacacattacaggtg----gtgcgtgcctgtaatcccagctactagggagggtgagataggagaatcgcttgaacctgggaggtggagattgcagtgagccgagatagcaccactgcactgtagcctgggcaatagagcagcagagtgagactccgtctc-----------------aaaaataa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077582 304 - 159171411 ccaggcatggtggctcacgcctataattccaacactttgggaggctgaggcaggtgggttacctgaggtcaggagtttgagaccagcctgggcaacatggtgaaa-cccatctctactaaaaatacaaaaatgagcagagcgt------ggtg----gcaggtgcctgtaatcccagctactagggaggctgaggcaggagaatcacttgaacctgggaggtgaaggttgcaatgagctgagattgcaccactgcactctagcctgggcaat--------agagtgagactttgcctcaaagaataaataaataaataaataa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796551 306 + 3513951 ctgggcacagtggctcacgcctataattccagcactttgggaagctgaggcaggtgggttagctgaggttgggtgtttgagaccagcctgggcaacatggtcaaaccccgtctctactaaaaatacaaaaataagccgagcgt------gctggtgtgtgtgtgcctgtagtcccagctactagggaggctgagcggggagaatcatttgaacctgggaggtgggagttgcaatgagctgagactgcaccactgcactctagcctgagcaat--------agagtgagactctgtctcaaaa---aaataaaaataaaaataa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845430 302 + 1920343 tcaggcacggtggctcacgcctataattccagcactttgggaggccgaggcaggtgggttacctgaggtcaggagtttgagaccagcctaggcaacatggtcaaaccccgtctctactaaaaatacaaaaataagccgagcgt------gctg----gtgtgtgcctgtaatcccagctactagggaggcggagggaggagaatcatttgaacctggaaggtggaggttgcaatgtgttgagattgcaccactgcactctagcctgggcaat--------agagtgagactctgtctcaaaa---aaataaaaataaaaataa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960263 302 - 7032639 ccaggcatggtggctcacgcctataattccagcactttgggaggctgaggcaggtgggttacctgagattaggagtttgagaccagcctgggcaacatggtcaaaccctgtctctactaaaaatacaaaaatgagccgagcgt------gctg----gcgtgtgcctggaatcccagctactagggaggctgagggaggagaatcatttgaacctgggaggtggaggttgcaatgagctgagattgcaccactgcactctagcctgggcaat--------agagtgagactctgtctcaaaa---aaataaatataaaaataa i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22050940 39 - 122082543 I e proCoq1.NW_012135969v1 2972841 0 + 8555354 C e micMur3.chr16 35886019 0 - 65901067 C e dasNov3.JH570468 372961 0 - 852752 C e canFam3.chr9 21392286 0 + 61074082 C e otoGar3.GL873537 22782399 0 + 28711273 C e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=-78892.000000 s hg38.chr17_GL383564v2_alt 68621 4 + 133151 a----------------------------a-----a----T s panTro5.chr17 16255206 5 + 83181570 a----------------------------a-----a---aT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162676 1 + 83442489 ----------------------------------------T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997714 8 + 4267968 a----------------------------a-----aaaaaT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978085 1 - 2193130 ----------------------------------------G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050152 35 - 77216781 aataaataaataaaataaaaataaaaat-a-----aaaaaG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962761 35 - 80997621 aaaaaagaaataaaataaaaataaaaat-a-----aaaaaG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019010 26 + 10377808 aagaaTAAAATAAAATAAA----------T-----AAAAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906114 35 - 8458610 aaaaaagaaataaaataaaaataaaaat-a-----aaaaaG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861864 35 + 75148670 aataaaaata-aaaataaaaataaaaataa-----aaaAAG i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113513 35 + 4569836 aataaacaaataaaataaaaataaaaat-a-----aaaaAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077886 13 - 159171411 a----------------------------AATAAAAAATGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796857 10 + 3513951 a----------------------------aat---aaaTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845732 8 + 1920343 a----------------------------a-----aaaTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960565 8 - 7032639 a----------------------------a-----aaTTGG i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 372961 4 - 852752 -------------------------------------AAAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22050940 39 - 122082543 I e proCoq1.NW_012135969v1 2972841 0 + 8555354 C e micMur3.chr16 35886019 0 - 65901067 C e canFam3.chr9 21392286 0 + 61074082 C e otoGar3.GL873537 22782399 0 + 28711273 C e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=15561.000000 s hg38.chr17_GL383564v2_alt 68625 1 + 133151 T s panTro5.chr17 16255211 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162677 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997722 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978086 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050187 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962796 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019036 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906149 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861899 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113548 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077899 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796867 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845740 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960573 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886019 1 - 65901067 T i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22782399 1 + 28711273 T i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21392286 1 + 61074082 T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 372965 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22050940 39 - 122082543 I e proCoq1.NW_012135969v1 2972841 0 + 8555354 C e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=1053707.000000 s hg38.chr17_GL383564v2_alt 68626 82 + 133151 AGAGATTCAGGCAGGAGGGGCGGAAAGTTGTGGATTGTGATTGTAGGGGAGGATATCAGTAccttcaatgcatt-caccctgg s panTro5.chr17 16255212 82 + 83181570 AGAGATTCAGGCGGGAGGGGCAGAAAGTTGTGGATTGTGATTGTAGGGGAGGATATCAGTAccttcaatgcatt-caccctgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162678 82 + 83442489 AGAGATTCAGGCAGGAGGGGCAGAAAGTTGTGGATTGTGATTGTAGGGGAGGATATCAGTAccttcaatgcatt-caccctgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997723 82 + 4267968 AGAGATTCAGGCAGGAGGGGCGGAAAGTTGTTGATTGTGATTGTAGGGGAGGATATCAGTAccttcaatgcatt-caccctgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978087 82 - 2193130 AGAGATTCAGGCAGGAGGGGGGGAAAGTTGTGGATCGTGATTGTAGGGGAGGATATCAGTAccttcaatgcatt-caccctgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050188 82 - 77216781 AGAGATTCGGGCAGGAGGGACAGAAAGTTGTGGATTGTGATTGTAGAGGAAGATATCAGTAccttcaatgcatt-caccctgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962797 82 - 80997621 AGAGATTCGGGCAGGAGGGGCAGAAAGTTGTGGATTGTGATTGTAGAGGAAGATATCAGTAccttcaatgcatt-caccctgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019037 81 + 10377808 AGAGATTCGGGCAGGAGGGGCAG-AAGTTGTGGATTGTGATTGTAGAGGAAGATATCAGTAccttcaatgcatt-caccctgg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906150 82 - 8458610 AGAGATTCGGGCAGGAGGGGCAGAAAGTTGTGGATTGTGATTGTAGAGGAAGATATCAGTAccttcaatgcatt-caccctgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861900 82 + 75148670 AGAGATTCGGGCAGGAGGGGCAGAAAGTTGTGGATTGTGATTGTAGAGGAAGATATCAGTAccttcaatgcatt-caccctgg i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113549 82 + 4569836 AGAGATTCGGGCAGGAGGGGCAGAAAGTTGTGGATTGTGATTGTAGAGGAGGATATCAGTAccttcaatgcatt-caccctgg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077900 82 - 159171411 AGAGATTCAAGCAGGAGGCGCTGTAAGTTGAGGACTGTGATCGTAGGGGAGGATGTCAGTAcctccaatgcatt-cactctgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796868 82 + 3513951 AGAGATTTAGGCAGGAGGCGCTGTAAGTTGAGGATTGTGAATGTAGGGGAGGATATCAGGActtccaatgcatt-cactctgg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845741 82 + 1920343 AGAGATTCTGGCAGGAGGTGCTGTCAGTTGAGGATTGTGAATGTAGGGGAGGATATCAGTActtccaatgcatt-cattctgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960574 82 - 7032639 AGAGATTGAGGCAGGAGGCATTGTAAGTTGAGGATTGTGATTGTAGGGGAGGATATCAGTAcctccaatgcatt-cactctgg i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886020 82 - 65901067 AGAGATTCAGGCTGGAGGGGCAGACAGTTGTGGATAGCAAATGTGGGGGAGGAGGTAGGTAccttcagtgcatt-tgctctgc i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972841 82 + 8555354 AGAGATTCAGGCTGAAGGGGCAGAGAGTTGTGAATTGCGAACTTGGGGGAGGAGGTAGGTGccttcaatgcatt-tgctgtgc i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782400 82 + 28711273 AGAGATGCAAGCGGGAGGGGCAGAGAATTGTGGATTGTGAATATGGGGGAAGAGGTAGGTGccttaaatgcatt-tgcaccgg i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21392287 83 + 61074082 GGAAATTCAGGAAGAAGGGGCAGAGAGTTGTGGATTGTGAATGTGGTTAAGGATGGCAGTGccttcaaagaattacattctgg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 372966 82 - 852752 AGAGAGTTGGGTGGAAATGGCAGAGAGTAGTGGATGGTGGATGTGAGTGAGGACGTCAGTAccttcaaaacatt-tgctcctg i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22050940 39 - 122082543 I e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=89552.000000 s hg38.chr17_GL383564v2_alt 68708 5 + 133151 aagac s panTro5.chr17 16255294 5 + 83181570 aagac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162760 5 + 83442489 aagac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997805 5 + 4267968 aagac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978169 5 - 2193130 aagac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050270 5 - 77216781 aagac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962879 5 - 80997621 aagac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019118 5 + 10377808 aagac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906232 5 - 8458610 aagac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861982 5 + 75148670 aagac i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113631 5 + 4569836 aagac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077982 5 - 159171411 aagac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796950 5 + 3513951 aagac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845823 5 + 1920343 aagac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960656 5 - 7032639 aagac i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886102 5 - 65901067 aagac i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972923 5 + 8555354 aagac i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782482 5 + 28711273 aagac i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22050979 5 - 122082543 AAGAC i mm10.chr11 I 39 C 0 s canFam3.chr9 21392370 5 + 61074082 gagat i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373048 3 - 852752 --gac i dasNov3.JH570468 C 0 C 0 e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=19000.000000 s hg38.chr17_GL383564v2_alt 68713 1 + 133151 c s panTro5.chr17 16255299 1 + 83181570 c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162765 1 + 83442489 c i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997810 1 + 4267968 c i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978174 1 - 2193130 c i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050275 1 - 77216781 c i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962884 1 - 80997621 c i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019123 1 + 10377808 c i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906237 1 - 8458610 c i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861987 1 + 75148670 c i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113636 1 + 4569836 c i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077987 1 - 159171411 c i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796955 1 + 3513951 c i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845828 1 + 1920343 c i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960661 1 - 7032639 c i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886107 1 - 65901067 c i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972928 1 + 8555354 c i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22050984 1 - 122082543 C i mm10.chr11 C 0 C 0 s canFam3.chr9 21392375 1 + 61074082 c i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373051 1 - 852752 c i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22782487 1 + 28711273 I e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=1676841.000000 s hg38.chr17_GL383564v2_alt 68714 114 + 133151 acatgtttgccccaaagctgctgtcctttataaaagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaacacacattattattt---tgtagtcacaacc s panTro5.chr17 16255300 114 + 83181570 acatgtttgccccaaagctgctgtcctttataaaagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaacacacattattattt---tgtagtcacaacc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162766 114 + 83442489 acatgtttgccccaaagctgctgtcctttataaaagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaacacacattattattt---tgtagtcacaacc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997811 114 + 4267968 acatgtttgccccaaagctgctgtcctttataaaagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaacacacattattattt---tgtagtcacaacc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978175 114 - 2193130 acacgtttgccccaaagctactgtcctttataaatgcatatttga----agcttctccttggaagtgacttccagagtcacccaagaaaacgcacattattattt---tgcagtcacaacg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050276 108 - 77216781 acatgtttgccccaaagctgctgtcct------aagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaacg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962885 108 - 80997621 acatgtttgccccaaagctgctgtcct------aagcatgtttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaacg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019124 108 + 10377808 acatgtttgccccaaagctgctgtcct------aagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaacg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906238 114 - 8458610 acatgtttgccccaaagctgctgtcctttataaaagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaacg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64861988 114 + 75148670 acacgtttgccccaaagctgctgtcctttataaaagcatgtttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaacg i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2113637 114 + 4569836 acttgtttgctccaaagcttctgtcctttataaaagcatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaacg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46077988 113 - 159171411 acacgtttgctccgaagctgctgtcc-ttataaaagtatatttga----agctcctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaatg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1796956 114 + 3513951 acacatttgctccaaagctgctgtcctttataaaagtatatttga----aactcctccttggaaatggcttccagagtcacccaagaaaatgcacaccattattt---tgcagtcacaatg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845829 114 + 1920343 acacatttgctccaaagctgctgtcctttataaaagtatatttga----agctcctccttggaaatgacttccagagtcacccaagaaaatgcacataattattt---tgcagtcgcaatg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960662 114 - 7032639 acacgtttgctccaaagctgctgtcctttataaaagtatatttga----agcttctccttggaaatgacttccagagtcacccaagaaaatgcacattattattt---tgcagtcacaatg i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886108 113 - 65901067 acaca-ttgcttcaaagctgctattctttataaaagcatatttga----agctcctccttggaaatgacttttagaaccatccaccaaaaggcatattattattt---tgcaatcacaact i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2972929 114 + 8555354 acacatttgctccaaagctgctattctttatacaagcatttttga----aactcctccttggaaatgactttcagaaccatccacgaaaaggcacattattattt---tgcaatcacaact i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782488 117 + 28711273 acacatttgctccagagtggctgttctctataaaagcatattgga----agctccaccttgaaaatgactttcagaaccacccatgaaaaggcacattattatttctgtaaaataatgggt i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22050985 117 - 122082543 ACCCTTTTGCTT-AAAGCTTGTTTTCTGTCCAAAAGCATGCTTGGAGCTAGCTCTTCCTTGGAAATGACTTCCAgaatcactcaagaaaattcaccttattattt---tacagtcacgact i mm10.chr11 C 0 C 0 s canFam3.chr9 21392376 114 + 61074082 acacatttgctccaaatctgctatattttatggaagcatatttga----agctccacattggaaatgactttcagaatcacccaagaaaatatacattattattt---tatagtcacaatg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373052 113 - 852752 acacatttatcccacaactgctgacctttgccaaaatgtttttga----agttcctccttg-aaatggcttttagaagcccccaagaaaatatgcattattattt---ttgagtcacagct i dasNov3.JH570468 C 0 C 0 e manLeu1.NW_012106252v1 2091119 5653 + 4244037 T a score=3268572.000000 s hg38.chr17_GL383564v2_alt 68828 216 + 133151 tgtttctgacccattaaagatgctatgcagcttggttattcaccctatgcactaggtgtggtttcaaatgacttctggctggttccaaaaataaacacacccatagaagatgaagattggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaagctgtgaaggcaagtttgaaggaagggtgatctgaggaatggc-----------aGGTCACCTGTAGGAAAA s panTro5.chr17 16255414 216 + 83181570 tgtttctgacccattaaagatgctatgcagtttggttattcaccctatgcactaggtgtggtttcaaatgacttctggctggttccaaaaataaacacacccatagaagatgaagattggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaagctgtgagggcaagtttgaaggaagggtgatctgaggaatggc-----------aGGTCACCTGTAGGAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16162880 216 + 83442489 tgtttctgacccattaaagatgctatgcagtttggttattcaccctatgcactaggtgtggtttcaaatgacttctggctggttccaaaaataaacacacccatagaagatgaagattggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaagctgtgagggcaagtttgaaggaagggtgatctgaggaatggc-----------aGGTCACCTGTAGGAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3997925 216 + 4267968 tgtttctgacccattaaagatgctatgcagcttggttattcaccctatgcactaggtgtggtttcaaatgacttctggctggttccaaaaataaacacacccatagaagatgaagattggcgttc----aat------gaggatga-c-c----------aaaagaatgtgtcccaagctgtgagggcaagtttgaaggaagggtgatctgaggaatggc-----------aGGTCACCTGTAGGAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978289 216 - 2193130 tgtttctgacccattaaagatgctatgcagcttggttattcaacctatgcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacaccaatagaagatgaagattggccttc----aat------aaggataa-c-c----------aaaagaatgtgtcccaagctgtgagggcaagtttgaaggaagggtgatctgaggaatggc-----------aGATCACCTGTAATAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050384 216 - 77216781 tgtttctgacccattaaagatgctatgcagcttggttattcaccctacgcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaagactggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCTCCTGTAGGAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27962993 216 - 80997621 tgtttctgacccattaaagatgctatgcagcttggttattcaccctacgcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaagactggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCTCCTGTAGGAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019232 214 + 10377808 tgtttctgacccattaaagatgctatgcagcttggttattcaccctacgcactaggtgtggtttcaaatgacatctggctggtt-caaaaataaacacacccttagaagatgaagactggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCTCCTGTAGGAAA- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906352 216 - 8458610 tgtttctgacccattaaagatgctatgcagcttggttattcaccctacgcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaagactggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCTCCTGTAGGAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862102 216 + 75148670 tgtttctgacccattaaagatgctatgcagcttggttattcaccctacgcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaagactggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCTCCTGTAGGAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2085466 216 + 4244037 TGtttctgacccattaaagatgctatgcagcttggttattcaccctacgcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaagactggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCTCCTGTAGGAAAA i manLeu1.NW_012106252v1 T 5653 C 0 s colAng1.NW_012122154v1 2113751 216 + 4569836 tgtttctcacccattaaagatgctatgcagcttggttattcaccctatgcactaggtgtggtttcaaatgatatctggttggttccaaaaataaacacacccttaaaagatgaagattggccttc----aat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagcttgaaggaagggtgatgtgagaaatggc-----------aGATCTCCTGTAGGAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46078101 216 - 159171411 tgtttctgactcattaaagatggtccgcagcttggttccttaccctattcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaaggttggccttc----aat------gaggataa-c-c----------aaaataatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagcaatggc-----------aGATCACCCACAGGAAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1797070 217 + 3513951 tgtttctgacccattaaagatggtatgcagcttggtttcttaccctactcactaggtgtggtttcaaatgacatctggctggttctgaaaataaacacacccttagaagatgaaggttggccttc----aat------gaggataacc-c----------aaaagaatgtgttccaggctgtgagggcaagtttgaaggaagggtgatctgagaaatggc-----------aGATCGCCCACAGGAAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1845943 216 + 1920343 tgtttctgacccattaaagacggtacgcagcttggttacttaccctactcactaggtgtggtttcaaatgacatctggctggttccaaaaataaacacaccctcagaagatgaaggttggccttc----aat------gaggataa-c-t----------aaaagaatgtgtcccaggctgtgagggcaagtttgaaggaagggtgatctgagcaatggc-----------agcTCACCCACAGGAAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960776 220 - 7032639 tgtttctgacccattaaagatggtacgcagcttggttacttaccctactccctaggtgtggtttcaaatgacatctggctggttccaaaaataaacacacccttagaagatgaaggttggccttcaatgaat------gaggataa-c-c----------aaaagaatgtgtcccaggctgtgagggcaagttcgaaggaagggtgatctgagcaatggc-----------aGATCACCCGTAGGAAAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886221 198 - 65901067 tgtttctgacccattaaagatgttactcagcttgatcgtgtgcccgactcaccaggcgtggtttcaaatgacatctggctggtccaaaaaataaacacacccttagaagatgaagatttgccttc----agt------caggatgg-c-c----------aaaagaatgtgtctcaggttgcaagggcaagtgtgaagaaagggtgatcagagcaatggc----------------------------- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2973043 198 + 8555354 tgtttctgacccattaaagatgttactcagcttcattgtgtaccctactcactaggcgtggtttcaaatgacatctggctggttcaaaaaataaatacacccttagaagataaagatatgccttc----aat------gaggataa-c-t----------acaagaatgtgtctcaggttgtgagggtgagtttgaagaaagggtgatctgagcaatggc----------------------------- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782605 177 + 28711273 tgtttctgacccactaaagatgctattcaccttgcttgtgtactctcctctgtaggtgtggtttcagatgacatctgtctggttcaagaaataaacacatccttagaaggtgaaga------ttc----agt------ggtgataa-c-c----------aaaaaaacatgcctcagCATG---------------AAGAAGGGTGACAGGAGCAGTGGC----------------------------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22051102 209 - 122082543 tgtttctgacccattaaacaaatgactca--------ataaaccttattcaataggtttagtttcaaataacatctggctggctccacaaagagaaacagccttaaaatatgtagagttgccttt----ccc------tcaaataa-tgt----------aaaaaaatacagtcccggc-------acacatttgaagAA----TGGCCTGAGTGGTAACCATATGATAGGAGGGAACACggaggagaa i mm10.chr11 C 0 I 70 s canFam3.chr9 21392490 211 + 61074082 tgtttctgacccattaaagatgctac----tttggttgtttatcccactcactagacttggttccaaatgatatctggctggtttcaaaaataaacacaccttcagaagatgaagatttgctttc----aatgtggaagtggataa-t-caaaaaaaaaaaaaaaaaagtgtcccagactgtgaggccaactttgtagaaggggtgatctgag---tggt-----------gggt-------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373165 199 - 852752 ggtttctgacccattaaagatgccacctggcttggtggtttgcactgtactc-aggcttggttccaaatgacatcgggctgtttccaaaattagacacaccctcagaatatgaaggttttccttt----aag------gaggatac-c-t----------ggaaggatgggtcacagactgcaaaggcaggtatgagacagggatgctttgagcaatggc-----------ag---------------- i dasNov3.JH570468 C 0 C 0 a score=543189.000000 s hg38.chr17_GL383564v2_alt 69044 43 + 133151 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA s panTro5.chr17 16255630 43 + 83181570 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163096 43 + 83442489 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCGAAAGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998141 43 + 4267968 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978505 43 - 2193130 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050600 43 - 77216781 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963209 43 - 80997621 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019446 42 + 10377808 -GATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906568 43 - 8458610 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862318 43 + 75148670 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2085682 43 + 4244037 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2113967 43 + 4569836 GAATTCTTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46078317 43 - 159171411 GAATACCTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1797287 43 + 3513951 GAATACCTGTATGGCAAGAC-CTAATATGTAGCTTCCAAAAGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1846159 43 + 1920343 GAATACCTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6960996 43 - 7032639 GAATACCTGTATGGCAAGAC-TTAATATGTAGCTTCCAAAAGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886419 36 - 65901067 -------tgcacagcgggaatttcacatgtagc-tccaaaagga i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2973241 35 + 8555354 -------tgtatggcaggaa-ttagcatgtagc-tccaaaagga i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782782 15 + 28711273 -------TGTATGGCAAAAA----------------------GA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21392701 35 + 61074082 --------atacaggaggaa-ttagtaagtagcttccaaaagga i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373364 34 - 852752 ---------tattggaggaa-ttagcctgtagtgccccaaaggC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22051311 70 - 122082543 I a score=5000521.000000 s hg38.chr17_GL383564v2_alt 69087 358 + 133151 ACAACTTGGAGGAGTATCTTTCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCATAGTTCCATCTGGAAT-GCATGAGAGTAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCATGCACATGACATAGTGGTGGATTTTCAGGGTCATATCCTTTGGAGAGCTAG--GCTTGGG-TATTTCTCCCTCAGATCAACCAAGGGTTT-CC----TTTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TATAAGGCATTTTCACTTAGTAA-----ACTTCCTTCCTTCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTTTGGCCCA s panTro5.chr17 16255673 358 + 83181570 ACAACTTGGAGGAGTATCTTTCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCATAGCTCCATCTGGAAT-GCATGAGAGTAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCATGCACATGACATAGTGGTGGATTTTCAGGGTCATATCCTTTGGAGAGCTAG--GCTTGGG-TATTTCTCCCTCAGATCAACCAAGGGTTT-CC----TTTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAGTAA-----ACTTCCTTCCTTCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTTTGGCCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163139 356 + 83442489 ACAACTTGGAGGAGTATCTTTCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCATAGCTCCATCTGGAAT-GCATGAGAGTAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCATGCACATGACATAGTGGTGGATTTTCAGGGTCATATCCTTTGGAGAGCTAG--GCTTGGG-TATTTCTCCCTCAGATCAACCAAGGGTTT-CC------TTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAGTAA-----ACTTCCTTCCTTCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTTTGGCCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998184 361 + 4267968 ACAACTTGGAGGAGTATCTTTCAGGATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCATAGCTCCATCGGGAAT-GCATGAGAGTAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCATGCACATGACATAGTGGTGGATTTGCAGGGTCATATCCTTTGGAGAGCTAG--GCTTGGG-TATTTCT-CCTCAGATCAACCAAGGGTTT-CCTTTTTTTTTTTTTT-----------TCTTCAAGCTTCTAGTGGG-TCTAATGCATTTTCACTTAGTAA-----ACTTCCTTCCTTCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTTTGGCCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978548 362 - 2193130 ACAACTTGGAGGAGTATCCTTCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCATAGCTCCGTCTGGAAT-GCATGAGAGCAGAGCTTCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCAGGCACATGACATAGTGGTGGCTTTGCAGGGTCATATCCTTTGGAGAACTAG--GCTTGGG-TATTTCTCCATCAGATCAACCAAGGGTTT-CC-ttttttttttttt-----------ttttCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAGTAA-----ACTTCCTTCCATCAGCATAGAAGTG-ACTTTTGTTTCTTTAATAAGTAAAAAAGAGGCTTGTTATTTTTTTGGCCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30050643 357 - 77216781 ACAACTTGGAGTAGTATCTTCCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCCTACCTCCATCTGGAAC-GCATGAGAGCAGAGCATCTGCTTGCCAAAATGTGTCAATGGTCATAAAATGCCACTTCACACACATGACATAGTGGTGGCTTTGCAGGGCCATATACTTTGGAGAACTAG--GCTTGGA-TATTTCTCCATCAGATTAACCAAGGGTTT-CC-----TTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGCATTTTCACTTAGTAA-----ACTTCCTTCTATCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTGTGGCCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963252 358 - 80997621 ACAACTTGGAGTAGTATCTTCCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCCTACCTCCATCTGGAAC-GCATGAGAGCAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCACACACATGACATAGTGGTGGCTTTGCAGGGCCATATACTTTGGAGAACTAG--GCTTGGA-TATTTCTCCATCAGATTAACCAAGGGTTTCCT-----TTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGCATTTTCACTTAGTAA-----ACTTCCTTCTATCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTGTGGCCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019488 354 + 10377808 ACAACTTGGAGTAGTATCTTCCAGAATTTGAGCACTGAT-----AGATT-AACATAA---AATCCTCATATTTCCTACCTCCATCCGGAAC-GCATGAGAGCAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAAT-CCACTTCACACACATGACATAGTGGTGGCTTTGCAGGGCCATATACTTTGGAGAA-TAG--GCTTGGA-TATTTCTCCATCAGATTAACCAAGGGTTT-CT-----TTTGCTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGCATTTTCACTTAGTAA-----ACTTCCTTCTATCAGCATAGAAGTG-ACTTTTGGTTTTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTGTGGCCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906611 357 - 8458610 AAAACTTGGAGTAGCATCTTCCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCCTACCTCCATCTGGAAC-GCATGAGAGCAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCACGCACATGACATAGTGGTGGCTTTGCAGGGCCATATACTTTGGAGAACTAG--GCTTGGA-TATTTCTCCATCAGATCAACCAAGGGTTT-CC-----TTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGCATTTTCACTTAGTAA-----ACTTCCTTCTATCAGCATGGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTGTGGCCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862361 354 + 75148670 ACAACTTGGAGTAGTATCTTTCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCCTACCTCCATCTGGAAT-GCATGAGAGCAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCATGCACATGACATAGTGGTGGCTTTGCAGGGCCATATACTTTGGAGAACTAA--GCTTGGA-TATTTCTCCATCAGATCAACCAAGGGTTT-CC--------TTTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGAATTTTCACTTAGTAA-----ACTTCCTTCTATCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTGTGGCCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2085725 357 + 4244037 ACAACTTGGAGTAGTATCTTCCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCATATTTCCTACCTCCATCTGGAAA-GCATGAGAGCAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACCTCACGCACATGACATAGTGGTGGCTTTGCAGGGCTATATACTTTGGAGAACTAG--GCTTGGA-TATTTCTCCATCAGATCAACCAAGGGTTT-CC-----TTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGCATTTTCACTTAGTAA-----ACTTCCTTCTATCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAGTAAAAAACAGGCTTGTTA-TTTTGTGGCCCA i manLeu1.NW_012106252v1 C 0 I 6187 s colAng1.NW_012122154v1 2114010 357 + 4569836 ACAACTTGGAGTAGTATCTTTCAGAATTTGAGCACTGAT-----AGATTAAACATAA---AATCCTCGTATTTCCTAGCTCCATCTGGAAC-ACATGAGAGCAAAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACTTCACGCACATGACATAGTGGTGGCTTTGCAGGGCCATTTACTTTGGAGAACTAG--GCTTGGA-TATTTTTCCATCAGATCAACCAAGGGTTT-CC-----TTTTTTTTT-----------TTTTCAAGCTTCTAGTGGG-TACAATGCATTTTCACTTAGTAA-----ACTTCCTTCCATCAGCATAGAAGTG-ACTTTTGGTTCTTTAATAAATAAAAAACAGGCTTGTTA-TTTTGTGGCCCG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46078360 360 - 159171411 ACAACTTGGAGGAGTCTCTTTCAGGATTTAAGCACGAGT-----AGACTAAACACAA---AATCCTTGTCATTCATGGCTCCATCTGGAAT-GGTTGAGGGCAGAGCAACTGCTCGCCAAAATGTGCCAATTGTCATAAAATGCCATTTCAAGCACATGACAAAGTGGTGGTTTTGCAGGGTCATATTCTTTGGAGAGGCAG--GTTCAGG-TATTTCCACATCAGATCAACTGAGAGTTT-CC-----TTTTTTTT------------CCTTCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAATAAAATGCATTTCCTTCTATCAGAATAGAAGTG-AC-TTAGTTTCTTTAATAAGTAAAGAACAGGCTTGTTG-TTTCTCGGCCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1797330 367 + 3513951 ACAACTTGGAGGAGCCTCTTTCGGGATTTGAGCACTAGT-----AGACTAAACACAA---AATCCTTGTCATTCATGGTTCCATCTGGAAT-GGATGAGGGCAGAGCATCTGCTTGCCAAAATGTGCCAATGGTCATAAAATGCCACCTCAAGCACATGACAAAGTGGTGGCTTTGCAGGGTCATACTCTTTGGAGAGTTAG--GTTCAGG-TATTTCCACAACAGATCAACTGAGGGTTC-CC-----tttttttttttttttttttgttttCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAGTAA-----ACTTCCTTCCGTCAGAATAGAAGTG-AC-GTTATTTCTTTAATAAGTAAAGAGCAGGCTTGTTA-TTTCTTGGCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1846202 358 + 1920343 ACAACTTGGAGGAGTCTCTGTCAGGATTTGAGCACTAGT-----AGACTACACACAA---AATCCTTGTCGTTCATGGCTCCATCTGGAAT-GGATGAGGGCAGAGCATCTGCTTGCCGAAATGTGCCAATGGTCATAAAATGCCACTTCAAGCACATGACAAAGTGGTGGCTTTGCAGGGTCATATTCT---GAGAGCTAGGTGTCCAGG-TATTTCCACATCAGATCAACTGAGGGTTC-Ct-----tttttttttttt--------ttttCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAGTAA-----ACTACCTTCCATCAGCATAGAAGTG-AC-TTTGTTTCTTTAATAAGCAAAGAGCAGGCTTGTTA-TTTCTTGGCCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6961039 358 - 7032639 ACAACTTGGAGGAGTCTCTTTCAGGATTTGAGCACTAGT-----AGATTAAACACAA---AATCCTCATTGTT-ATAGCTCCATCTGGAAT-GGATGAGGGCAGAGCATCTGCTTGCGAAAATGTGCCAATGGTCATAAAATGCCACTTCAAGCACATGACAAAGTGGTGGCTTTGCAGGGTCGTATTCTTTGGAGAGCTAG--GTTCGGA-TATTTCCACTTCAGATCAACTGAGCGTTC-CC-----TTTTTTTTTTTT--------TTTCCAAGCTTCTAGTGGG-TATAATGCATTTTCACTTAGTAA-----ACTTCCTTCCATCAGAATAGAAGTG-AC-TTTGTTTCCTTAATAAGTAAAGAGCAGGCTTGTTA-TTTCTTGGCCCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886455 350 - 65901067 acaactttgaGAAGTATCTTCCATATTTTGAGTACTAAG-----AGATTAAACTTAA---AATCCTCATAGTTGATAGCTCCATCTGGAATAGCATGAGGGTAAAACATCTGtttgccaaaatgtgctgatggtcacacgatgccac-tgaagcaaatgccgatgtggtggctttgcaaggtcacctcctttggagaactag--gagcaGG-TATCTCCACATCAGATCAGCTGAGGGTTT-TG------------TT-----------TTTTAGAACGTCTAGTGGG-TATTATGCATTCTTACTTAGTGA-----ACATTCTTCCATGAAAATAGAAATG-ACTTTTGGTTCTTTGATAAATAAAGAACAAGCTTGTTA-TCTCTTGGCCCG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2973276 351 + 8555354 acaactttgaggagtatcattcatattttgaattctaag-----AGATTAAACATCA---AATCCTGATAGTTGATAGCTCCATCTGGAATAGCATGAGGGCAGAACATCTGTTTGCCAAAGTGTACTGATGGTCATGCGATGCCAC-TCCAGCACATGACAATGTGGTGGCTTTGCAAGGTCACATCCTTTGGAGAACTAG--GAGCAGGTTATCTCCACATCAGATCAACTGAGGGTTT-CC------------TT-----------TTTTCAAGCTTCTAGTGGG-TATTATGCATTCTTACTTAGTAA-----ACGTCCTTCCATTAGAATAGAAATG-ACTTTTGGTTCTTTGATAAATAAAGAACAGACTTGTTA-TCTCTTGGCCCA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22782797 345 + 28711273 ACAACTCTGAGGAGCATCATTCATATTTTGAGCACTAATATTACAGATTAAACATAA---AATCCTCATAGTTGATAGCTCCATCTGAAACAGCCTGTGGGCAGAATATCTGTTTGCCAAAATGTACTGATGGTCATGCCACAGCAC-TCAACCACATGAAGAACTGGTGGCTTTGCAAGATCATGTCCTTTGGAGAACTAG--GCTCAGG-CATTTCTATGTCAGATCAACTGAGGGTTT-CC------------TT-----------TTTTCAAGCTTCTATTAGG-TATTATG-----------AATAA-----AATTCCTTCCACGAGAATAGAAACGAACTTTTGGTTCTTTGATGAATAAAGAACAGGCTTGTTA-TTTCTTGGCCCA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22051381 318 - 122082543 agAACTTTAAGAAATACCTTTTGTATTTGGGACGCTGAT-----CAGTTAGACTTGA---AATCTCTGCAGTTCAAAGCTCCCTCTGTAATAGCATGAGGACAGAAGATGAGCTTGCTAAAATGTTCTGACAGTCATGAGATGTCACCTTA-GCATGTGCAAATGTGTTGGCCTTG-------AGACCCTTGGGAGAACTAG--GCTCAGG-GATTTCTACACTAGATTGACTAGGGGTTT-CC------------TT-----------CTTTCCAACTTCTGGTGGG-AATAATGTGGTCTTGCTAAGTAG-----GTTT----------------------TCATTGGATTCTTTAA-AAAAAAAGAATAGATTTG----TTTCTTGGCTCA i mm10.chr11 I 70 C 0 s canFam3.chr9 21392736 329 + 61074082 actgctttaaggagTGTCTGTCCTGTTTTGAGCAGTGAT-----AGATTAAACATAA---AATCCTCATAGTTTGTATCTTCATCTGGAATAGCACAAGGGCAGAACATTTGTTTGCCAAGATGTATTGATGATCACAAGATGCTA--TTAAACATGTTGTGATGTGGTGTTTTTTCAGGATTACATCCTTTGGAGAACTGG--GCTCAGA-TGTTTCTATATCAAATCA----GGGGTTT-CC------------TT-----------TTTTCAAGCTTTTAGCAAG-TATTATAC----TTACTCAGTAG-----ACTTCCTTCCATTAGAATAGAAATT-ACCTTTGG-----------ATAGAGAACAGGCTT-TTG-TTTTGTGGCCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373398 323 - 852752 -------------------------ATTT---CGTTGAT-----CAATTAAATGTAAAACAACCCTTGCACTTCATAGCTCCATTGGAAATAGCATGGTGACAGAATTTCTGTTTGCC-AAATGTACTAATGGTAATGAGATGCCACT--GAACATGTGGTAATGTCATGGTTTTGCAGGGTCATGACCTTTGGAGAGCTGT--GCTCACA-TGTTTCTACATCACATCAATTGGGGGCTT-GC------------CT-----------TTTTCAAATTTCTAGTGGATTATTATGCTCTTTTGCTCAGTAA-----ACTTCCATGCATTAGAAAAGAAATG-ACCTTTGGATCTATGATCAA-GAAGGACAGAATTGTTA-TTTTGTGGCCTA i dasNov3.JH570468 C 0 C 0 a score=667075.000000 s hg38.chr17_GL383564v2_alt 69445 50 + 133151 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAGCTCAATGGAGCTCAATC s panTro5.chr17 16256031 50 + 83181570 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAGCTCAATGGAGCTCAATC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163495 50 + 83442489 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAGCTCAATGGAGCTCAATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998545 50 + 4267968 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAGCTCAATGGAGCTCAGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978910 50 - 2193130 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAGCTCAATGGAGCTCAATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30051000 50 - 77216781 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAATTCAGTGGAGCTCAATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963610 50 - 80997621 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAATTCAGTGGAGCTCAATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019842 50 + 10377808 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAATTCAGTGGAGCTCAATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1906968 50 - 8458610 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAATTCAGTGGAGCTCAATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862715 50 + 75148670 ---------------------------TTCT---------------------------CATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAATTCAGTGGAGCTCAATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2092269 50 + 4244037 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAATTCAGTGGAGCTCAATC i manLeu1.NW_012106252v1 I 6187 C 0 s colAng1.NW_012122154v1 2114367 50 + 4569836 ---------------------------TTCT---------------------------AATT------------TAG-----GATATTG-------------TC-AGCACTGATTGAGTTCAGTGGAGCTCAGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46078720 50 - 159171411 ---------------------------TTCT---------------------------AATA------------TGG-----GATATTG-------------TC-AGCACTGATTGAGCTCAGTGGAGCTCAATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1797697 50 + 3513951 ---------------------------TTCT---------------------------AATT------------TGG-----GATATTG-------------TC-AGCACTGATTGAGCTCAGTGGAGATCAATC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1846560 50 + 1920343 ---------------------------TTCT---------------------------AATT------------TGG-----GTTATTG-------------TC-AGCACTGATTGAGCTCAGTGGAGATCAATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6961397 50 - 7032639 ---------------------------TTCT---------------------------AATT------------TGG-----GATATTG-------------TC-AGCACTGATTGAGCTCAGTGGAGCTCAATC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886805 56 - 65901067 ---------------------------TTCT---------------------------AACT------------CAGGAAGGGATATTG-------------TCTAGTACTGATTGAGCTCCATCGAGCTCACTC i micMur3.chr16 C 0 I 123 s proCoq1.NW_012135969v1 2973627 56 + 8555354 ---------------------------TTCT---------------------------AATT------------TAGGAGGGGATATTG-------------TCTAGGACTGATTGGGCTCCATTGAGCTCACTC i proCoq1.NW_012135969v1 C 0 I 61 s otoGar3.GL873537 22783142 56 + 28711273 ---------------------------TTCT---------------------------AATT------------TAGGAGGAGATGTTG-------------TCTAGTACTGATTGGGCTCCATTGAGCTCACTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22051699 75 - 122082543 ---------------------------TTCT---------------------------TGTTGGGGAATGGGGGTGG-----GACATGGGGAGAAACACTGCTA-AGCAATGGCTGGGTTCAACTGAATTAAGAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21393065 56 + 61074082 ---------------------------CTCT---------------------------AATT------------TAGGAGGGGATACTG-------------TCTAGTAGTGATTGAGCTTCATTGAACTCAATC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373721 106 - 852752 TTCCAGGTGGCCTTTCTTAGGTCGATTTTCTCCCAGAGTCTTTTTGGAGGGTGAGCTAGATT------------TAGGAATGCATATTG-------------TCTACTACTAATTGAGTTCCACT-AGTCCA--- i dasNov3.JH570468 C 0 C 0 a score=720921.000000 s hg38.chr17_GL383564v2_alt 69495 65 + 133151 TGTATTTTTTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---tg--taatatgac s panTro5.chr17 16256081 65 + 83181570 TGTATTTTTTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---tg--taatatgac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163545 65 + 83442489 TGTATTTTTTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---tg--taatatgac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998595 65 + 4267968 TGTATTTTTTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---tg--taatatgac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1978960 64 - 2193130 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---tg--taatatgac i nomLeu3.chrUn_GL397460_1 C 0 I 4 s rheMac8.chr16 30051050 64 - 77216781 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---cg--taatatgaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963660 64 - 80997621 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---cg--taatatgaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019892 64 + 10377808 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---cg--taatatgaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1907018 64 - 8458610 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---cg--taatatgaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862765 64 + 75148670 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagaaaga----ca---tg--taatgtgaa i chlSab2.chr16 C 0 I 4 s manLeu1.NW_012106252v1 2092319 64 + 4244037 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---cg--taatatgaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2114417 64 + 4569836 TGTA-TTTCTGCATTATTGCATCTCAGTACT--GAAAAGATTGGAAGagagaga----ca---cg--taatatgac i colAng1.NW_012122154v1 C 0 I 4 s calJac3.chr5 46078770 64 - 159171411 TGTA-TTTCTGCATTATTGCATCTCAGTAGT--GAGAAGACTGGAagagagaca----ca---tg--taacatgat i calJac3.chr5 C 0 I 4 s saiBol1.JH378271 1797747 64 + 3513951 TGTA-TTTCTGCATTATTGCATCTCAGGAGT--GAGAAGACTAGAAGAGAGAGA----CA---tg--taacatgat i saiBol1.JH378271 C 0 I 4 s cebCap1.NW_016107730v1 1846610 64 + 1920343 TGTA-TTGCTGCATTATTGCATCTCAGTAGT--GAGAAGACTGGAAGAGAGAGA----Cg---tg--taacatgat i cebCap1.NW_016107730v1 C 0 I 4 s aotNan1.NW_018502359v1 6961447 64 - 7032639 TGCA-TTTCTGCATTATTGCATCTCAGTAGT--GAGACGACTGGAAGagagaga----ca---ca--taacatgat i aotNan1.NW_018502359v1 C 0 I 4 s otoGar3.GL873537 22783198 59 + 28711273 -----------CACGTCTGCATCTCAGTGGCAAGAGAGGATGGGGAGAGagaga----gacactg--cagtgtgat i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22051774 66 - 122082543 ----TATCCCACATTATGCCATCTTATTG-T--AAAAGTATTGGAAGGGACAGAGTGTCA---TGGATAGTAAGAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21393121 55 + 61074082 --TA-TGTATGCACTATCACATCTCAGTG-T--GAGGAGATTGGAAGT----------CA---GT--tggtgtgat i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 373827 59 - 852752 -----TTTCTCTATTACTGCTCCTCAGTAAT--GAGAAAATGGGAAGagagaga----ca----g--tagtatgat i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2973683 61 + 8555354 I e micMur3.chr16 35886861 123 - 65901067 I a score=798013.000000 s hg38.chr17_GL383564v2_alt 69560 65 + 133151 ----agagtgtggacattggaattagagagatctgtatttgaaccctggctccatcatgtaggagctct s panTro5.chr17 16256146 65 + 83181570 ----agagtgtggacactggaattagagagatctgtatttgaaccctggctccatcatgtagaagctct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163610 65 + 83442489 ----agagtgtggacactggaattagagagatctgtatttgaaccctggctccatcatgtagaagctct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998660 64 + 4267968 ----agagtgtggacattggaattagagagatctgtatttgaaccctggctccatcatgtagga-ctct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1979028 65 - 2193130 ----agagtgtggacactggaattagagagatctgtgttggaatcctggctccatcatgtaggagcttt i nomLeu3.chrUn_GL397460_1 I 4 C 0 s rheMac8.chr16 30051114 64 - 77216781 ----agagtgtggacattagaattacagacatctgt-tttgaatccgggctccatcatgtaggagctct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963724 64 - 80997621 ----agagtgtggacattagaattacagacatctgt-tttgaatccgggctccatcacgtaggagctct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2019956 64 + 10377808 ----agagtgtggacattagaattacagacatctgt-tttgaatccgggctccatcacgtaggagctct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1907082 64 - 8458610 ----agagtgtggacattagaattacagagatctgt-tttgaatccgggctccatcacgtaggagctct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862833 64 + 75148670 ----agagtgtggacattagaattacagagatctgt-tttgaatccgggctccatcacgtaggagctct i chlSab2.chr16 I 4 C 0 s manLeu1.NW_012106252v1 2092383 64 + 4244037 ----agagtgtggacattagaattacagagatctgt-tttgaatccgggctccatcacataggagctct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2114485 64 + 4569836 ----agagtgtggacactggaattacagagatctgg-tttgaatccaggctccatcacgtaggagctcc i colAng1.NW_012122154v1 I 4 C 0 s calJac3.chr5 46078838 61 - 159171411 ----agactgtggacactggaatt----agatctgcttttgaatcctggctctaccacgtaggagctct i calJac3.chr5 I 4 C 0 s saiBol1.JH378271 1797815 61 + 3513951 ----agactgtgtacagtggaatt----agatctgcgtttgaatcctggctccaccacgtaggagctct i saiBol1.JH378271 I 4 C 0 s cebCap1.NW_016107730v1 1846678 61 + 1920343 ----agactgtggacactggaatt----agatctgcgtttgaatcctggctccaccacgtaggagctct i cebCap1.NW_016107730v1 I 4 C 0 s aotNan1.NW_018502359v1 6961515 61 - 7032639 ----agactgtggacactggaatt----agatctgcgtttgaatcctggctccaccacgtaggagctct i aotNan1.NW_018502359v1 I 4 C 0 s proCoq1.NW_012135969v1 2973744 65 + 8555354 ----agagtatggccactggagtgagggacacctgtgtttgaatccaggctccaccatgtagaagctct i proCoq1.NW_012135969v1 I 61 C 0 s otoGar3.GL873537 22783257 62 + 28711273 -------gtatggccaccggaattagagagatctgtgtttgaatccaggctccatcatgtagaagcgct i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22051840 60 - 122082543 --------TATGGCCACTGGAATTAGAGAAGTCTGC-TTTTGATCTTGGTTCCATCATGGTGAACCTGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21393180 64 + 61074082 ----agagcatggctgttggaatcagagagatttgggtttgaatgctggat-taccacataggagctct i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 373886 69 - 852752 ggaaaggatgtggctgttggcgttagagagagctgggtttgaaacctgcctctgccatgtaggagctcc i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35886861 123 - 65901067 I a score=2400142.000000 s hg38.chr17_GL383564v2_alt 69625 167 + 133151 gtgaccttgggagacctctcagaggcttagggtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgcctggcactgtgcctggtgcacagtggaggctc-agcaaGCAGGACCCAT-CACCAATGACAG-AGTCACGCTGTG s panTro5.chr17 16256211 167 + 83181570 gtgaccttgggagacctctcagaggcttagggtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgcctggcactgtgcctggtgcacagtggaggctc-agcaaGCAGGACCCAT-CACCAATGACAG-AGTCACGCTGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163675 167 + 83442489 gtgaccttgggagacctctcagaggcttagggtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgcctggcactgtgcctggtgcacagtggaggctc-agcaaGCAGGACCCAT-CACCAATGACAG-AGTCACGCTGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998724 167 + 4267968 gtgaccttgggagacctctcagaggcttagggtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgcctggcactgtgcctggtgcacagtggaggctc-agcaaGCAGGACCCAT-CACCAATGACAG-AGTCACGCTGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1979093 167 - 2193130 gtgaccttgggagacctctcagaggcttaggatccttatctacaaacccttgcagcattttgagaggactgaaggagctgctgcatatgaggtgcctggcacagtgcctggtgcacagtggaggctc-agcaaGCAGGACCCAT-CACCAATGACAG-AGTCATGCTGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30051178 167 - 77216781 gtgaccttgggagacctctcagaggcttggtgtccttatttacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgtctggcacagtgcctggtgcacagtggagactc-agcaaGCAGGACCGAT-CACCAGTGACAG-AGtcacactgtg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963788 167 - 80997621 gtgaccttgggagacctctcagaggcttggtgtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgtctggcacagtgcctggtgcacagtggagactc-agcaaGCAGGACCAAT-CACCAGTGACAG-AGTCACACTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2020020 167 + 10377808 gtgaccttgggagacctctcagaggcttggtgtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgtctggcacagtgcctggtgcacagtggagactc-agcaaGCAGGACCAAT-CACCAGTGACAG-AGTCACACTGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1907146 167 - 8458610 gtgaccttgggagacctctcagaggcttggtgtccttatctacaaacccttgcagcattttgagaggactgaaggagctggtgcatatgaggtgtctggtacagtgcctggtgcagagtggagactc-agcaaGCAGGACCAAT-CACCAGTGACAG-AGtcacactgtg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64862897 167 + 75148670 gtgaccttgggagacctctcagaggcttggtgtccttatctacaaacgcttgcagcattttgagaggactgaaggagctggtgcatatgaggtgtctggcacagtgcctggtgcacagtggagactc-agcaaGCAGGACCAAT-CACCAGTGACAG-AGTCACACTGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2092447 167 + 4244037 gtgaccttgggagacctctcagaggcttggtgtccttatctacaaacctttgcagcattttgagaggactgaaggagctggtgcatatgaggtgtctggcacagtgcctggtgcacagtggagactc-agcaaGCAGGACCAAT-CACCAGTGACAG-AGTTACACTGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2114549 167 + 4569836 gtgaccttgggagacctctcagaggcttggtgtccttatctacaaacccttgcagcattctgagaggactgaaggagctggtgcatatgaggtgtctggcacagtgcctggtgcacagtggagactc-agcaaGCAGGACCAAT-CGCCAGTGACAG-AGTCACACTGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46078899 166 - 159171411 gtgaccttgggagacctctcagaggctcactgttc-tatctacaaagccttgcagcattttgagaggactgaaggagctggtgcataggagatgcctggcacagtgcctggtgcacagtggaggctc-agcaagcaggagcCAT-CACCAATGACAG-AGTCACACTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1797876 167 + 3513951 gggaccttgggatacctctcagaggcttagtattcttatctacaaaaccttgcagcattttgagaggactgaaggagctcgtgcacaggaggtgcctggcacagtgcctggtgcatggtggaggctc-agcaagcaggagcCAT-CACCAATGACAG-AGTCACACTGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1846739 167 + 1920343 gtgaccttggggtacctctcagaggcttaatgttcttatctataaagccttgcagcattttgagaggactgaaggagcttgtgcctaggaggtgcctagcacagtgcctggtgcacagtggaggctc-agcaaGCAGGAGCCAT-CACCAATGACAG-AGTCACACTGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6961576 167 - 7032639 gtgaccttgggatacctctcagaggcttagtgttcttatctacaaagccttgcagcattttgaaaggactgaaggagctggtgcataggaggtgcctggcacagtgcctggtgcacagtggaggctc-agcaagcaggagcCAT-CACCAATGACAG-AGTCACACTGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35886984 162 - 65901067 gtgaccctgggcaacctctcaagggctcggtgtcctcatctataagtcctttcagggttttgtgaggactgaaggacataa------tgaggttcccagcacagtgcctggcacacagtgggagctc-tgtgagcaggagctctGGACTGGTAACAG-AGTCACACTGTG i micMur3.chr16 I 123 C 0 s proCoq1.NW_012135969v1 2973809 167 + 8555354 gtgaccttgggcaatctctcaggggctcagtgtcttcatctacaagcccttgcagggtttcgtgaggactgaaggacataatgcatgtgaggttcccagcacagtgcctggcgcacaatgggagctc-tgtgagcaggagcCAT-GACCGGTGACAG-AGTCACACTGTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22783319 153 + 28711273 gtaaccatgggcaatctctgaggggcttggggtcttcatctac-agcccttgcaggggttcatgaggactgagggagataatgcatgtgaggtgcctagtacagtgtctggtgcacagtgggagctc-tatgagca--------------gtgacAG-AGTCCTACTGTG i otoGar3.GL873537 C 0 I 14631 s mm10.chr11 22051900 145 - 122082543 AGGATCTTGGGAAAACTC-CAGGG----------CTACCTTAAAAACTTTTAGAGCGTTTTGTGGTTCCTGAAGGAATTGGTGGATATGAGGTAACT----CAGTGTCTGGTGCGAAGTAGGCACTCGGGCAAGTAGAAGTCAA-T--------TAT-AGCCAGACTGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21393244 119 + 61074082 gggaccacaggccgcctctcagagacttggtgttctcatctacaaaCCCT----------------------------------ATAGGGGGTTTGT------GTGCTT--TGAACAGTGGGTGCTC-AATGATCAG---CCAT-T----CTGATAGCATTCATGTTGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 373955 150 - 852752 gtgacctggggcagcctctc-----------------ctccataaacccttgcagggtgtcgtgaggactgaaggagatggtgcacatgaggagcttggcccagtgcctggtgcacagcagggtctc-aGCCAGCAGGTGCCAC-CACTAAGAACAG-CACCCTCCAGCA i dasNov3.JH570468 C 0 C 0 a score=5683929.000000 s hg38.chr17_GL383564v2_alt 69792 427 + 133151 CACAGGCATGGAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAA-TTTAGGTTTCTTAATGTTC-TGTGAACACTGAATACTAGTAGAAACGGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAGGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAATGGGCCTTGAACC-AATGGCCTTGTAAGTCCTTTCTCATTTCAGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGACGGGTTTCCTTACATGGCTTTTCTCACAGAGTCTTAATTGAATATGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACATATGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATAAGCACTGCTACAGGCAA-------GGTTGGTCA s panTro5.chr17 16256378 427 + 83181570 CACAGGCATGGAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAA-TTTAGGTTTCTTAATGTTC-TGTGAACACTGAATACTAGTAGAAACGGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATATGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAACGGGCCCTGAACC-AATGGCCTTGTAAGTCCTTTCTCATTTCAGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTTACATGGCTTTTCTCACAGAGTCTTAATTGAATATGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACATATGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATAAGCACTGCTACAGGCAA-------GGTTGGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16163842 427 + 83442489 CACAGGCATGGAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAA-TTTAGGTTTCTTAATGTTC-TGTGAACACTGAATACTAGTAGAAACGGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATATGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAACGGGCCCTGAACC-AATGGCCTTGTAAGTCCTTTCTCATTTCAGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGACGGGTTTCCTTACATGGCTTTTCTCACAGAGTCTTAATTGAATATGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACGTATGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATAAGCACTGCTACAGGCAA-------GGTTGGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3998891 428 + 4267968 CACAGGCATGGAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAA-TTTAGGTTTCTTAATATTCTTGTGAACACTGAATACTAGTAGAAACGGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAGGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAACAGGCCCTGAACC-AATGGCCTTGTAAGTCCTTTCTCATTTCAGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGACGGGTTTCCTTACATGGCTTTTCTCACAGAGTCTTAATTGAATATGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACATACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATAAGCACTGCTACAGGCAA-------GGTTGGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1979260 424 - 2193130 CACAGGCATGGAGCATAGTGCTTCATGCAGACTAGGTGCTCCCAAAATTTTAGTTTTCTTAATATTCTTGTGAACACTGAATACTAGTAGAAACGGAGG--T-----------GGGTGGCTTCCTGCA----CATAGGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAACGGGCCCTGAACC-AATGGCCTTGTAAGTCCTTTCTCATTTCAGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTTACATGGTTTTTCTCACAGAGTCTTAATTGAATATGAACTGGATGAGACACA-AGACTTTCCTCATTTAGGAG-AAGAAGTGCAGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTCTCACTC--TAGCTCAATGTCCCATGGATAAGCACTGCTGCAGGCAA-------GGTTGGTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30051345 429 - 77216781 cacgggcatgcagcacagtgcttcatgcagagtaggtgctcccaaaattttagttTTCTTAATGTTCTTGTGAACACTGAATACTAGTAGAAACAGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAAGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAAGGGATCCTGAGCC-AATGGCCTTATAAGTCCTTTCTGAGGTCGGCTTCCAGGATTCCCTATCTCATA-GTCTAGTTTCTAGATGGGTTTCCTCACATGGCGTTTCTCACAGAGTCTTAATTGAGTACGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACTGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAACGTCCCATGGATGAGCGCTGCTGTGGGCAA-------GGTTGGTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27963955 429 - 80997621 CACGGGCATGCAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAATTTTAGTTTTCTTAATGTTCTTGTGAACACTGAATACTAGTAGAAACAGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAAGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAAGGGATCCTGAGCC-AATGGCCTTATAAGTCCTTTCTGAGGTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTCACATGGCGTTTCTCACAGAGTCTTAATTGAGTACGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACTGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAACGTCCCATGGATGAGCGCTGCTGTGGGCAA-------GGTTGGTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2020187 429 + 10377808 CACGGGCATGCAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAATTTTAGTTTTCTTAAAGTTCTTGTGAACACTGAATACTAGTAGAAACAGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAAGAAGAGGGTAGAGTTGCCTCCGTC-TGCCTGGATGGAACTGCAAAGGGATCCTGAGCC-AATGGCCTTATAAGTCCTTTCTGAGGTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTCACATGGCGTTTCTCACAGAGTCTTAATTGAGTACGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACTGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAACGTCCCATGGATGAGCGCTGCTGTGGGCAA-------GGTTGGTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1907313 429 - 8458610 cacgggcatgcagcacagtgcttcatgcagagtaggtgctcccaaaattttagttTTCTTAATGTTCTTGTGAACACTGAATACTAGTAGAAACAGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAGGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAAGGGATCCTGAGCC-AATGGCCTTATAAGTCCTTTCTGAGGTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTCACATGGCGTTTCTCACAGAGTCTTAATTGAGTACGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACTGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATGAGCGCTGCTGTGGGCAA-------GGTTGGTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64863064 429 + 75148670 CACGGGCATGCAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAATTTTAGTTTTCTTAATGTTCTTGTGAACACTGAATACTAGTAGAAACAGAGG--T-----------GGGTGACTTCCTGCAGCCCCATAGGAAGAGGGTAGAGTTGCCTCCATC-TGCCTAGATGGAACTGCAAAGGGATCCTGAGCC-AATGGCCTTATAAGTCCTTTCTGAGGTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTCACATGGCGTTTCTCACAGAGTCTTAATTGAGTACGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACTGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATGGGCGCTGCTGCGGGCAA-------GGTTGGTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2092614 429 + 4244037 CACGGGCATGCAGCACAGTGCTTCATGCAGAGTAGGTGCTCCCAAAATTTTAGTTTTCTTAATGTTCTTGTGAACACTGAATACTAGTAGAAACAGAGG--T-----------GGGTGGCTTCCTGCAGCCCCATAGGAAGAGGGTAGAGTTGCCTCCATC-TGCCTGGATGGAACTGCAAAGGGATCCTGAGCC-AATGGCCTTATAAGTCCTTTCTGAGGTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATAGGTTTCCTCACATGGCGTTTCTCACAGAGTCTTAATTGAGTACGAACTGGATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACTGACGTGCCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATGAGCGCTGCTATGGGCAA-------GGTTGGTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2114716 417 + 4569836 CACAGGCATGCAGCACAGTGCTTCATGCAGACTAGGTGCTCCCAAAATTTTAGTTTTCTTAACGTTCTTGTGAACACTGAATACCAGTAGAAACAGAGG--T-----------GGGTGGCTTCCTGCAGCCCCACAGGAAGAGGGTAGAGTTGCCTCCATC-TGTCTGGATGGAACTGCAAAGGGACCCTGAGCC-AATGGCCTTATAA------------GTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTCACATGGCTTTTCTCACAGAGTCTTAATTGAATACGAACTGCATGAGACACA-AGCCTTTCCTCATTTAGGAGAAAGAGGCACAGATATGTCCCCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--TAGCTCAATGTCCCATGGATGAGCGCTGCTGTGGGCAA-------GGTTGGTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079065 429 - 159171411 CACAGGCACAGAGCACAGTGCTTCATGCCGAGTAGGTGCTCCAAACATTTTAGTGTTCTTATTGTTCTGGTGAACACCGAACAGTAGTAGAAACAGAGG--T-----------GGGTAGCTTCCTGCAGGCCCATAGGAAGAGGGAGGAGTTGCCTTGATC-TGTCTGGATGGAACTGCAAAGGGTCCCTGAACC-AATGGCCTTGTACGTCCTTTCTGAGCTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATAGGATTCCTTACATGGATTTTCTCAGAGAGACCTAATTGAATATGAACTGGATGAGATAGA-AGCCTTTCCTCACTTAGGAGAAAGAGATACAGATGTGCCCTCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--CAGCTTAATGTCCCGTGGATAAGCACTGCTGCAGGCAA-------GATCAGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1798043 429 + 3513951 CACAGGCACAGAGCACAGTGCTTCATGCAGAGTACATGCTCCAAACATTTTAGTGTTCTTATAGTTCTGATGAACACTGAATAGTAGCAGAAACAGAGG--T-----------GGGTAGCTTCCTACAGGCCCATAGGAAGAGGGGAGAGTTGCCTCCATC-TGCGTGGATGGAACTGCAAAGGGTCCCTGAACC-AACAGCCTTGTACCTCCTTTCTGAGCTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTTATATGGATTTTCTCAGAGAGACCTAATTGAATATGAACTGGATGAGACAGA-AGCCTTTCCTTACTTAGGAGAAAGAGACACAGATGTGCCCTCTGCTC-TGGGGACAGGGCCCAGCTGTTACTC--CAGCTTAATATCCTGTGGATAAGCACTGCTGTGGGCAA-------GATCAGTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1846906 428 + 1920343 CACAGGCACAGAGCACAGGGCTTCATGCAGAGTAGGTACTCCAAACATTCTAGTGTTCTTATAGTTCTGGTGAGCACTGAACAGTAGCAGAAACAGAGG--T-----------GGGTAGCTTCCTGCAGGCCCATAGGAAGAGGGGAGAGATGCCTCCATC-TGCCTGGATGGAACTGCAAAGTGTCCCTGAACC-AATGGCCTTGTACCTCCTTTCTGAGCTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTTTCATGGATTTTCTCAGAGAGACCTAATTGAATATGAACTGGATGAGACAGA-AGCCTTTCCTCATTTAGGAGAAAGAGACACAGATGTG-CCTCTACTC-TGGGGACAGGGCCTAGCTGTCACTC--TAGCTTAATATCCCGTGGATAAGCACTGCTGTGGGCAA-------GATCAGTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6961743 429 - 7032639 cacaggcacagagcacagtgcttcatgcagagtaggtgctccaaacatttTAGTGTTCTTATAGTTCTGGTGAACACTGAATAGTAGTAGAAACAGAGG--C-----------GGGTAGCTTCCTGCAGGCCCTTAGGAAGAGGGGAGAGTTGCCTCCATC-TGCCTGGATGGAGCTGCAAAGGGTCCCTGAACC-AATGGCCTTGTACCTGCTTTCTGAGCTCGGCTTCCAGGATTCCCTATCACATA-GTCTAGTTTCTAGATGGGTTTCCTTACATGGATTTTCTCAGAGAGATCTAATTGAATATGAACTGGATGAGACAGA-AGCCTTTCCTCATTTAGGAGAAAGAGACACAGATGTGCCCTCTACTC-TGGGGACAGGGCCCAGCTGTCACTC--CAGCTTAATGTCCCGTGGATAAGCACTGCTTCGGGCAA-------GATCAGTCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35887146 424 - 65901067 TGTGGGTATAtagtacagtgcttcatgcatagtaggtgctccaaaaattttagttTTCTTAACATTCTTGTGAACACTGAACAATAGTAGAAATGGAGG--------------------CTTCCTGCAGCCCCGTAGGAAGAGGAGAGAGTTGCCTCTGTC-TGCCCGGATGGGACGGCAAAGGGACATTGAACTGGATGGTCTTGCAAGTCCTTTCTGATCTTAGCTTCCAGCATCCCCACCCAAACA-GTCTGGTTTCTGGATGGGCTTCTGTGCATGGTTTTTCTCACAGGCTCCTAAACGCGTATGAGCTGGATGAAGCACA-AACCTTTCCTTCTTTAGGAGACAGAAGTACAGAAGTGCCCCCAACTCTTGGGGACAGGGCACAGCTGTCACTC--TAACTCAATGCCCCATGAATAAGCACTGCTGCAGGCAA-------GTTTGGCCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2973976 423 + 8555354 TGTGGGTATACAGTACAGTGCTTCATGCATAGTAGGTCCTCCAAGACATTTAGTTTTCTTAACATTCTTGTGAACACTGAACAGTAGTAGAAATGGAGG--------------------CTTCCTGCAGCCCCATAGGAAGAGAAGAGAGCTGCCTCCGTc-tgcccagatgggacagcaaagggacattgaactggatggccttgtaagtcctttccaatcttagcttccaggatccCCACCCAAACA-GTCTGGTTTCC-AAGGCACTTCTGTACATGGTTTATCTCACAGGCTTCTAACTGAGCATGAGCTGGATGAAGCACA-AACTTTTCCTCCTTTAGGAGACCGAAGTACAGAAGTGCCCCCAACTCTTGGGGACAGGGCACAGCTGTCACTC--TAACTCAATGCCCCATGAATAAGCACTGCTGCAGGCCA-------GTTTGGTCG i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22052045 383 - 122082543 TGCAGGCAAATACTGTATTACACTGTGTGCAATAAGTA-------------AGCTTTCTAAGTATTCCTATGTGGAC---ACAGTGGCACAAACAGAGC--T-----------CAAAAGACTCCTTGA-------AGGAAGAGGTTAACATTGTCTCTACC-CACTTGGATGGTATGGCA-----GTACTGAGCT----GGGCT-----GTGCTTTCTGATGTTAGCTTTTGGGATTCACTACCAACCA-TTTTGGTTTCCAA--GGAGATGCTCAGATAG-TTTCCCCATAGACTCCTCACTGGG-ATGAGCTGAACAAGGCAAAGAGCTTTTTAAGGCCTAAGAAAAAGCAAT-CAGAAGTGCTCCCAGATC-TGGGACCAGGAA------GCCACTG--TAACTTAATGCCCAGCAAACAAATGCTACCGTTGGCAA-------AGTTGGTTA i mm10.chr11 C 0 C 0 s canFam3.chr9 21393363 445 + 61074082 TGTAAGCATACAGTACAGT-CTTCATGCAGGGTGGGTTCTCCCAAGTTGTTAGTTTCCTAAATTTTC-TATGAACATTGAGTAAGAGTAGAAATGGAGC--CTGGTGTGGGCAGGGAGGCTTCCAACAGCCCTGTAAGGAGAGAGGAGAATTGCCTCTATCTTGCTTGGATGGAAGGGTAAAAGGCTGTTGAACAGGATGGCCTCGTGGGT-TGCTCTGATCTCAGCTTCCAGGATTCTCTATCAAACA-GTCTAGTCTCTGGGTGGGCTCTCTTAAATGGCTTTTCTCACAGAATCCTCACTGAACAGGAGTTGGGTAAGACACA-GATGTTTCTTCCTTTAGGAGAAAGAGGCATAGACATGCCCCTCTCT--GGGGGGCAGGGTACAGCTGTCACTC--TAACTCAACACCCTGTGAACAATCGATGCTGTTGGCAAGGTAATGGGTTGGTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 374105 411 - 852752 AATAAGCTCAGAGTA-AGTGTTTTATGCACAATAGGTGCCTCCAA--TTGCTGGTTTCCTAATGTTC-CATGAACTTTGAATAACAGCAGAACTGGAGCCTT-----------GGGAGGCTTCCTGCAGCCCTGCAGGAAGAGGGTAGAGTTGACTCCA---TGGGTAGATGGAATGGCGTGGGGACATCGAGCTCAATGACATTGGAAGTCCTTTCTGACACCAGCTTCCAGGATGCCCTACCAGGCAGGTCTGGCTTCCAGGCAGCCTTCCTTAGATAGTTTTCCTCACAGAGTCCTTTCTGAGGGTTAGCTGGATGAGGCACA-GACATTGCTTTGTTTAGGAGAAA-------------------------GAGGGAGAGGGTACAATCGTTACTCCTTAACTTGACA-CCTGTGAATAAACTTTGCTGTTGGCAAGGTAATGGGTTGGTCG i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22783472 14631 + 28711273 I a score=4538188.000000 s hg38.chr17_GL383564v2_alt 70219 276 + 133151 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTAATGAGGTATAGGACTCAGGTGAAGTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGAGGAATACTTGACATGGTTG-CCACACCCACTGCTAACAGAATATAAA-GCCCTGGAAAGGACCAAGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA s panTro5.chr17 16256805 276 + 83181570 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAATATTTAATGAGGTATAGGACTCAGGTGAAGTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAATGA-GGTAAAAAGGAGGAATACTTGACATGGTTG-CCACACCCACTGCTAACAGAATATAAA-GCCCTGGAAAGGACCAAGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTCAAACTGACTTCCAGAGCTCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164269 276 + 83442489 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTAATGAGGTATAGGACTCAGGTGAAGTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAATGA-GGTAAAAAGGAGGAATACTTGACATGGTTG-CCACACCCACTGCTAACAGAATATAAA-GCCCTGGAAAGGACCAAGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTCAAACTGACTTCCAGAGCTCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999319 276 + 4267968 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTAATGAGGTATAGGACTCAGGTGAAGTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAACGAGGAATACTTGACATGGTTG-CCACACCCACTGCTAACAGAATATAAA-GCCCTGGAGAGGACCAAGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1979684 276 - 2193130 CTTTGAAGCCAAACCATGAAGCTTTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAGGAAGCCAGAGTAAAACATTTAATGAGGTATAGGACTCAGGTGAAGTGGCTAAATAACAAACGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGTTTGACATGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCTTGGAGAGGATCAAGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30051774 276 - 77216781 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAATTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGCTTGACACGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964384 276 - 80997621 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAATTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGCTTGACACGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2020616 276 + 10377808 CTTTGAAGCCAAACCATGAAGCTCTTATTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAATTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGCTTGACACGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTCAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1907742 276 - 8458610 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAATTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGCTTGACACGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64863493 276 + 75148670 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAATTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGCTTGACATGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTTAT--CCCAGGGA-A--AAGGAATCAGGCTTTGAAACTGACTTCCAGAGCTCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093043 276 + 4244037 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCGGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAATTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAAAAAGGGGGAATGCTTGACACGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115133 276 + 4569836 CTTTGAAGCCAAACCATGAAGCTCTTACTTAACCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTGAAACATTTTATGAGGTATAGGACTCAGGTGAAGTGGCTAAATAACAAATGGAA-----------------------AAATCAGCAAAGGA-GGTAGAAAGGGGGAATGCTTGACACGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCTGGAGAGGACCAGGGCTTAT--CCCAGGGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079494 267 - 159171411 CTTTGAAGCCAAACCGTGAAGCTCTTACTTAATCAATCAGCGTTGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAAGGTAAAACATTTTATGAGGTATAGGACTCAGGTGAAGTGGCCAAATAACAGATGGAA-----------------------AAATCAGCAAAGGA----------GGGGAATGCTTGACATGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCT-GAAAGGACCAGGGCTTAT--CCCAGAGA-A--AAGAAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1798472 275 + 3513951 CTTTGAAGCCGAATCATGAAGCTCTTACTTAATCAATCAGCA-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAAGTGGCCAAATAACAGATGGAA-----------------------AAATTAGCAAAGGA-GGTGAAAAGGGGGAATGCTTGACATGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCC-AAGAGGACCAGGGCTTAT--CCCAGAGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1847334 275 + 1920343 CTTTGAAGCCCAACCGTGAAGCTCTTACTTAATCAATCAGCG-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTGTAGGACTCAGGTGAAGTGGCCAAATAACAGATGGAA-----------------------AAATTAGCAAAGGA-GGTGGAAAGGAGGAATGCTTGACATGGTTG-CCACGCCCACTGCTGACAGAATATAAA-GCCCT-GAGAGGACCAGTGCTTAT--CCCAGAGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6962172 275 - 7032639 CTTTGAAGCCGAACCGTGAAGCTCTTACTTAATCAATCAGCG-TGTTTTGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTATAGGACTCAGGTGAAGTGGCCAAATAACAGATGGAA-----------------------AAATCAGCAAAGGA-GGTGAAAAGGGGGAATGCTTGACGTGGTTG-CCACACCCACTGCTGACAGAATATAAA-GCCCT-GAGAGGACCAGGGCTTAT--CCCAGAGA-A--AAGGAATCAGGTTTTGAAACTGACTTCCAGAGCTCCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35887570 275 - 65901067 CTTTGAAGCCAAACCATGAAGCTCTTCCTTAACCAACCGGCG-TGATTGGTGAGGAGTCCTAACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGCTAAAGGACTCATGTGAGGTGGCTAAATCACAAATGGAA-----------------------AAATCAGTAAAGAA-GGT-AAAAGGAGGAATGCTTCATGCAGTCG-CCACACCCCCAGTTGACAGGATATAAA-GCCCTGGAGAGGACTAGGGCTTAT--CCCAGAGG-A--GAGGAATCAGGCTTTGAAACTGACCTTCAGAGCTCCG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2974399 274 + 8555354 CTTTGAAGCCAAACCATGAAGCTCTTCCTTAACCAACCAGTG-TGATTGGTGAGGAGTCCTAACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTAAAGGACTCATGTGAGGTGGCTAAATCACAAATGGAA-----------------------AAATCAGTAAAGAG-GGC-AAAAGGAGGAATGTTTC-CGTAGTCA-CCACACCCATGGCTGCCAGGATATAAA-GCCCTGGAGAGGACTAGGGCTTAT--CCCAGAGG-A--AAGGAATCAGGCTTTGAAACTGACCTTCATAGCTCCG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22798103 288 + 28711273 CTTTGAAGCCACACCGTGAAGCTCTTACGTCATGAC---ACG-CAGCAGGGAAGGAGTCCTGACTTAGCGAGAAGCCCAAGTGGAGTCTTTTATGAGGGGAGGGACTCTTCTGAGCAGAC-ACATAACAAATGGAGGGGAAGGGCTTTTGATAATCAACAAATAAGAAAAAAA-AAA-AAAAAGGAGGGGGTTGC-CTCACCTGTCCACACCCTCTGCAG--GGGGTATAAATGCTCAACCGAGGACGGACACCCACAGCTCTGAGG-CTTGGAGAACCCGACTCTG-------TCTTC--AGCCCGG i otoGar3.GL873537 I 14631 N 0 s mm10.chr11 22052428 276 - 122082543 CTTTGAAGCCAAACCATGAAGCTCTTTCTGAACTAACCAGCA-TGATTGGTGAGGAGTCCTGACATAGCAGGAAGCCAAAGTAAAACATTTTATGAGCTAAAGGACTCATGCGAGGTGGCTAAATAACAAATGGGA-----------------------AATTGGTAATATGA-GCAAAAGGAGGATAATGTTTTACATGGTTG-CCACACCCACCACTGACAGGATATAAA-GCTCCAAAGAGGACCAGGCCTTCT--ACCAGACA-C--AGGACATCAGGCGTAGAAGTTGACTCTCATAACTCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21393808 262 + 61074082 -------------CTTTGAAGGTCTTACTTAACTAACCAGCA-TAATTGGTGAGGAGTCCTGACTTAGCAGGAAGCCAGAATAAAGCATTTTATGAGGTAAAGGACTCGCGTGAGGTGGCTAAATAACAAATGGGA-----------------------AAATTGGCAAATAC-GGTAAAAGGGGGTAATGCTGCATGTGGTCA-CCACACCCACTGCTGACAGAATATAAA-GCCCTGAAAAGGACCAGGGCTTAC--ACCAGAGA----GAGGAATCAGCCTTTGAAACTGCCCTTCAGAGCTCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 374516 273 - 852752 CTTTGAAGTCTAACCATGAAGCTCTTACCTAAGCAACCAGTG-TGATTGGTGAGGAGTCCTGACTTAGCAAGAAGCCAGAGTAAAACATTTTATGAGGTAAAGGACTCTTGTGAGGTAGCTAAATAACAGA-GGAA-----------------------ATATTGCTAGAGAGCGGGATGAAGGGGTAATGCTATG---GGTTG-CCACACCCACTGCTGACAGAATATAAG-GTCCTGGAGAGG-CCAGGGCTTAC--ACCAGAGAGA--AAAGAATCAGCCTTTGAAAGTGACCTCCAGAGCTCTT i dasNov3.JH570468 C 0 C 0 a score=549344.000000 s hg38.chr17_GL383564v2_alt 70495 35 + 133151 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT s panTro5.chr17 16257081 35 + 83181570 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164545 35 + 83442489 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999595 35 + 4267968 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1979960 35 - 2193130 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052050 35 - 77216781 CTTCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964660 35 - 80997621 CTTCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2020892 35 + 10377808 CTTCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908018 35 - 8458610 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64863769 35 + 75148670 CTGCCTCCCAGCACCATGTCCTACAACTTCTG-CCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093319 35 + 4244037 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115409 35 + 4569836 CTGCCTCCCTGCACCATGCCCTACAACTTCTG-CCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079761 35 - 159171411 CTCCTTCCCTGCACCATGCCCTACAACTGCTG-CCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1798747 35 + 3513951 CTCCCTCCCAGCACGATGCCCTACAACTGCTG-CCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1847609 35 + 1920343 CTCCCTCCCAGCACCATGCCCTACAACTGCTG-CCT i cebCap1.NW_016107730v1 C 0 T 12883 s aotNan1.NW_018502359v1 6962447 35 - 7032639 CTCCCTCCCTGCACCATGCCCTACAACTGCTG-CCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35887845 35 - 65901067 CTCCCTCCCAGCACCATGTCCTACACCTGCTT-CCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2974673 35 + 8555354 TTCCCTCCCAGCATCATGTCTTACACCTGCTT-CCT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22687336 36 + 28711273 CTGCCAGCCTGTGGCACGCCTGCCCTCTGCCTGTGT i otoGar3.GL873537 N 0 C 0 s mm10.chr11 22052704 34 - 122082543 -CTCCCTCCAGCACCATGCCATACAACTGCTG-CCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21394070 34 + 61074082 -CTCCCTCCAGCACCATGCCTTACAACTGCTG-CCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 374789 35 - 852752 CCCCTTGCCAGAGCCATGTCGTACAACTGCTG-CCT i dasNov3.JH570468 C 0 C 0 a score=2613034.000000 s hg38.chr17_GL383564v2_alt 70530 138 + 133151 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCC---CCCCAGCTGCCACGGCTACACCCTGCCCGGGGCCTGCAACATCCCTGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA s panTro5.chr17 16257116 138 + 83181570 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGCTACACCCTGCCCGGGGCCTGCAACATCCCCGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164580 138 + 83442489 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGCTACACCCTGCCCGGGGCCTGCAACATCCCCGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999630 138 + 4267968 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCC---CCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAATATCCCCGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1979995 138 - 2193130 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCATGGCTGCACCCTGCCTGGGGCCTGCAACATCCCTGCCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052085 138 - 77216781 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGACGCACCCTACCTGGGGCCTGCAACATCCCTGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964695 138 - 80997621 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGACGCACCCTACCCGGGGCCTGCAACATCCCTGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2020927 138 + 10377808 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGCCCCTGCGTGCC---CCCCAGCTGCCACGGACGCACCCTACCCGGGGCCTGCAACATCCCTGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908053 138 - 8458610 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCC---CCCCAGCTGCCACGGCCGCACCCTACCCGGGGCCTGCAACATTCCTGCCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64863804 138 + 75148670 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGCCGTACCCTACCCGGGGCCTGCAACATCCCCGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093354 138 + 4244037 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCC---CCCCAGCTGCCACGGCCGCACCCTACCCGGGGCCTGCAACATTCCTGCCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115444 138 + 4569836 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGCCGCACCCTACCCGGGGCCTGCAACATCCCCGCCAATGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079796 138 - 159171411 GCCCAGCCTGAGCTGCCACACCAGCTGCTCCTCCCGGCCCTGCGTGGC---CCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1798782 138 + 3513951 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGATCCTTCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1834761 138 + 1920343 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGGC---TCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i cebCap1.NW_016107730v1 T 12883 T 84775 s aotNan1.NW_018502359v1 6962482 138 - 7032639 GCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35887880 138 - 65901067 GCCCAGCTTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAACGTGGGCAGCTGCAACTGGTTCTGTGAGGGCTCCTTCAA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2974708 138 + 8555354 GCCCAGCCTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCATGGC---CCCCAGCTGCCACACCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAACGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22687372 138 + 28711273 GCCCACCACCTTTCGGCCAGCCAGTTGTGTCTCCAAGACCTTCCTATCCAGCTCCTGTTGGCCCAGCAGCTGCCGGCC---AGCCAGTGGCATCCTCAGCTTCATGGGTCCCAGTGGCTGGTACGGTGAAGGGGCCTTCAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052738 138 - 122082543 GCCCGCCATGAGCTGCCGCACCAGCTGCTCTTCCCGGCCCTGCGTGCC---CCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAATGTGGGCAACTGCAATTGGTTCTGTGAGGGCTCCTTCAA i mm10.chr11 C 0 C 0 s canFam3.chr9 21394104 138 + 61074082 GCCCAACCTGAGCTGCCGCTCCACCTGCTCCTCCCGGCCCTGCGTGCC---CCCCAGCTGCCATACCTGCACCCTGCCTGGAGCCTGCAACATCCCTGCCAACGTGGGCAACTGTGGCTGGTTCTGCGAGGGCTCCTTCAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 374824 138 - 852752 GCCCAACCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCC---CCCCAGCTGCCACGGCTGCACCCTGCCTGGGGCCTGCAACATCCCGGCCAATGTGGGCAGCTGCGGCTGGCTCTGCGAGGGCTCCTTCAA i dasNov3.JH570468 C 0 C 0 a score=1689618.000000 s hg38.chr17_GL383564v2_alt 70668 81 + 133151 TGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA s panTro5.chr17 16257254 81 + 83181570 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164718 81 + 83442489 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999768 81 + 4267968 TGGAAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1980133 81 - 2193130 CGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052223 81 - 77216781 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964833 81 - 80997621 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021065 81 + 10377808 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908191 81 - 8458610 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64863942 81 + 75148670 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093492 81 + 4244037 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115582 81 + 4569836 CGGCAGCGAGAAGGAGACCATGCAGTTCCTGAATGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46079934 81 - 159171411 TGGCAGTGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1798920 81 + 3513951 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1750124 81 + 1920343 TGGCAACGAGAAGGAGACCATGCAGTCCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCAGGA i cebCap1.NW_016107730v1 T 84775 C 0 s aotNan1.NW_018502359v1 6962620 81 - 7032639 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35888018 81 - 65901067 TGGCAGGGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCGGCTGGAGCGGGA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2974846 81 + 8555354 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCGGCTGGAGCGGGA i proCoq1.NW_012135969v1 C 0 T 92462 s otoGar3.GL873537 22687510 81 + 28711273 TGGCAGCGAGAAGGAGACCATGCAGTTTCTGAACGAACGCCTGGCCAGCTACTTGGAGAAGGTGCGGCAGCTGGAGCAGGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052876 81 - 122082543 TGGCAATGAGAGGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTATATGGAGAAGGTGAGGCAGCTGGAGAGAGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21394242 81 + 61074082 TGGCAGCGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 374962 81 - 852752 TGGCAACGAGAAGGAGACCATGCAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGA i dasNov3.JH570468 C 0 C 0 a score=565868.000000 s hg38.chr17_GL383564v2_alt 70749 37 + 133151 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCT s panTro5.chr17 16257335 37 + 83181570 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164799 37 + 83442489 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999849 37 + 4267968 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1980214 37 - 2193130 AAACGCAGAGCTGGAGAACCTCATCCGGGAGCGGTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052304 37 - 77216781 CAACGCGGAGCTGGAGAGCCTCATCCGGGAGCGGTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964914 37 - 80997621 CAACGCGGAGCTGGAGAGCCTCATCCGGGAGCGGTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021146 37 + 10377808 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908272 37 - 8458610 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864023 37 + 75148670 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093573 37 + 4244037 CAACGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115663 37 + 4569836 CAATGCGGAGCTGGAGAACCTCATCCGGGAGCGGTCG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080015 37 - 159171411 GAACGCGGAGCTGGAGCACCTCATCCGGGAGCGGTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1799001 37 + 3513951 GAACGCGGAGCTGGAGCGCCTCATCCGGGAGCGGTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1750205 37 + 1920343 GAACGCGGAGCTGGAGAGCCGCATCCGGGAGTGGTGT i cebCap1.NW_016107730v1 C 0 I 87033 s aotNan1.NW_018502359v1 6962701 37 - 7032639 GAACGCGGAGCTGGAGCACCTCATCCAGGAGCGGTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35888099 37 - 65901067 GAACGCGGAGCTGGAGAGCCTCATCCAGCAGCGGTGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22687591 37 + 28711273 GAATGCGGAGCTGGAGGGCAAGATCCAAGAGGCCTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22052957 37 - 122082543 GAATGCAGAGCTGGAATGTAAGATCCAAGAGAGGAAC i mm10.chr11 C 0 C 0 s canFam3.chr9 21394323 37 + 61074082 GAACGCGGAGCTGGAGAGCCGCATCCGGGAGTGGTGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 375043 37 - 852752 GAACGCGGAGCTGGAGGGCCGCATCCGCGAGTGGTGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T a score=416141.000000 s hg38.chr17_GL383564v2_alt 70786 30 + 133151 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC s panTro5.chr17 16257372 30 + 83181570 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164836 30 + 83442489 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999886 30 + 4267968 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1980251 30 - 2193130 CAGCAGCAGGAGCCATTGCTGTGCCCTAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052341 30 - 77216781 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964951 30 - 80997621 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021183 30 + 10377808 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908309 30 - 8458610 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864060 30 + 75148670 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093610 30 + 4244037 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115700 30 + 4569836 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080052 30 - 159171411 CAGCAGCAGGAGCCCTTGCTGTGCGCCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1799038 30 + 3513951 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6962738 30 - 7032639 CAGCAGCAGGAGCCCTTGCTGTGCCCCAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35888136 30 - 65901067 CAGGAGCAGGACCCCTTGGTGTGTGCCAAC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22687628 30 + 28711273 CAGACCCAGGTGCTCACCACGTGTCCTGAC i otoGar3.GL873537 C 0 I 96815 s mm10.chr11 22052994 30 - 122082543 CAGCAGCAGGACCCCCTGGTGTGTCCTGCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21394360 30 + 61074082 CAGCAGCAGGTGCCTTTCGTGTGTCCCAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 375080 30 - 852752 CAGCAACAGGTGCCTTACGTGTGCCCGGAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=4615366.000000 s hg38.chr17_GL383564v2_alt 70816 376 + 133151 TACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAG-GAGGTGGGCACCACACTGCCAGCTTAATGAACTACTTATCTATATT-TGACATACTAAACTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGATAAAG----ACATAGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAGCCAC---A-AAGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAGCAATCTTATAT-----------GGCGTCTTACTCCAAACCAGAATATCTGA-TTTTT---TGGTTTGATTATGATACCCTGGTTTTGTTTTCAGA-GCATTACCGCATTTTC-----AAAAAGTAT s panTro5.chr17 16257402 376 + 83181570 TACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAG-GAGGTGGGCACCACACTGCCAGCTTAATGAACTACTTATCTATACA-TGACATACTAAACTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGATGAAG----ACATAGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAGCCAC---A-AAGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAGCAATCTTACAT-----------GGCGTCTTACTCCAAACCAGAATATCTGA-TTTTT---TGGTTTGATTATGATACCCTGGTTTTGTTTTCAGA-GCATTACCGCATTTTC-----AGAAAGTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16164866 376 + 83442489 TACCAGTCCTATTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAG-GAGGTGGGCACCACACTGCCAGCTTAATGAACTACTTATCTATACA-TGACATACTAAACTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGATGAAG----ACATAGA-CTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAGCCAC---A-AAGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAGCAATCTTACAT-----------GGCATCTTACTCCAAACCAGAATATCTGA-TTTTT---TGGTTTGATTATGATACCCTGGTTTTGTTTTCAGA-GCATTATCGCATTTTC-----AGAAAGTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 3999916 376 + 4267968 TACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAG-GAGGTGGGCACCACACTCCCAGCTTAATGAACTACTTATCTATATT-TGACATACTAAACTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGATAAAG----ACATAGA-TTCACCGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAGCCAC---A-AAGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAGCAATCTTATAT-----------GGCGTCTTACTCCAAACCAGAATATCTGA-TTTTT---TGGTTTGATTATGATACCCTGGTTTTGTTTTCAGA-GCATTACCGCATTTTC-----AAAAAGTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1980281 376 - 2193130 TACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGGTGAG-GAGGTGGGCACCACACTGCCAGCTTAATGAACTACTTACCTATATT-TAACATACTAAACTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGATAAAG----ACATAGA--TCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGACCCAC---A-AGGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAGCAATCTTATAC-----------GGCTTCTTACTCCAAACCAGAATATCTGATTTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTC-----AAAAAGTAT i nomLeu3.chrUn_GL397460_1 C 0 I 576 s rheMac8.chr16 30052371 376 - 77216781 TACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGCCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATGGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAACCAC---A-AGGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAACAATCTTATAT-----------GACTTCTTACTCCAAACTGGAATATCTGA-TTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTT-----AAAAAGTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27964981 376 - 80997621 TACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGCCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATGGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAACCAC---A-AGGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAACAATCTTATAT-----------GACTTCTTACTCCAAACTGGAATATCTGA-TTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTC-----AAAAAGTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021213 376 + 10377808 TACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGCCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATGGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAACCAC---A-AGGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAACAATCTTATAT-----------GACTTCTTACTCCAAACTGGAATATCTGA-TTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTT-----AAAAAGTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908339 376 - 8458610 TACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGCCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATAGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAACCAC---A-AGCAAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCAGTCATAACAATCTTATAT-----------GGCTTCTTACTCCAAACCGGAATATCTGA-TTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTACAGCATTTTT-----AAAAAGTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864090 376 + 75148670 TACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGTCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATAGA-TTCACTGGCTTAGGTATG--ACATCAAGTGGTCTTAGAAAATCTG-TTGTAGAACTAC---A-AGGGAAGGATGCAGGCTGGTGTTGGAGTAAAGCATTAGACCAAAATCAGTCATAACAATCTTATAT-----------GGCTTCTTACTCCAAACCGGAATATCTGG-TTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTT-----AAAAAGTAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2093640 376 + 4244037 TACCAGTCCTACTTCAAGACCATTGAGGAGCTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGCCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATAGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAACCAC---A-AGCAAAGGATGCAGGCTGGTGTTAGAGTGAAGCGTTAGACCAAAATCAGTCATAACAATCTTATAT-----------GGCTTCTTACTCCAAACCGGAATATCTGA-TTTTT---TGGTTTGATTATAATAACCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTT-----AAAAAGTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2115730 376 + 4569836 TACCAGTCCTACTTCAAGACCATTGAGGAACTTCAGCAGAAGGTGAG-GAGGTGGGCCCCACACTGCCAGCTTAATGAACTACTTATCTATATT-TAACATACTAACCTGT---GAAT-GGATCTAAGTCTGTTCACAGT-AATGCTGAGAATGGTAAAG----ACATAGA-TTCACTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAACCAC---A-AGGGAAGGATGCAGGCTGGTGTTAGAGTGAAGCATTAGACCAAAATCCGTCATAACAATCTTATAT-----------GGCTTCTTACTCCAAACCAGAATATCTGA-TTTTT---TGGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTA-----AAAAAGTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080082 379 - 159171411 TACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAG-GGGGTGGGCGACACAGTGCCAGTTTAATGAACTATTTATCTGTATT-TAACATACTAACCGGTGGGGAAT-GGACCTAAGTCTTTTCACAGC-AACGTTGAGAAGGATAAAG----ATGTAGA-TTCGTTGGCTTAGGTATG--AGATCAAGCAGTCTTAGAAAATCTG-TTGTAAAGCCGC---A-AGGGAAGGAGACAGGCTGGTGTTAGACTAAAGCGTTTCACCAAAATCAATCATAGCAATCTTACAT-----------GGCTTCTTACCCCAAACCAGAATATCTGA-TTTTT---TAGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTT-----ACAAAGTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1799068 376 + 3513951 TACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAG-GGGGTGGGCACCACACTGCCAGTTTAATGAACTATTTATCTGTATT-TAACACACTAACCTGT---AAAT-GGACCCAAGTCTGTTCACAGT-AACGTTGGGAAGGATAAAT----ACATAGA-TTCATTGGCTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAGCCAC---A-AGGGAAGGATACAGGCTGGTGTTACACTAAAGCATTTCACCAAAATCAGTCATAGCAATCTTACAT-----------GGCTTCTCACCCCAAACCAGAATATCTGA-TTTTT---TAGTTTGATTATGATATCCTGGTTTTGTTTTCAGA-GCATCATAGCATTTTT-----ACAAAGTAT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6962768 376 - 7032639 TACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAGAAGGTGAG-GGGGTGGGCACCACACTGCCAGTTTAATGAACTATTTATCTGTATT-TAACATACTAACCTGT---GAAT-GGACCTAAGTCTGTTCACAGC-AACGTTGAGAAGGATAAAG----ATGTAGA-TTCATTGACTTAGGTATG--ACATCAAGTAGTCTTAGAAAATCTG-TTGTAGAGCCAC---A-AGGGAAGGATACAGGCTGGTGTTAGACTAAAGCATTTCACCAAAATCAGTCACAGCAGTCTTACGT-----------GGCTTCTTACCCCAAACCAGAATATCTGA-TTTTT---TAGTTTGATTATGATACCCTGGTTTTGTTTTCAGA-GCATTATAGCATTTTT-----ACAAAGTAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35888166 373 - 65901067 TACCAGTCCTACTTCCGGACCATCGAGGAGCTCCAGCAGAAGGTGAG-G-GCTGGGCACCACGCTGCCACTTTAATGACCCG-TTATCCAAATT-TAGCATACCCACTTCT---GCAT-GGATCTAAGGCTGTTCACAGCTAATGTTGAGAATGATAAAG----GTCTGGAATTCATTGGCTTAGGTATG--ACATCAGGTAGTCTTAGAAAATATA-TTTTGGAGCCAC---G-AGGGAAGGGTACAGGCTGGGCACTGAGTGAGGCGTTAGAAT-GAATCAGTC--AGCAGTCTTACGT-----------TGCCTCTTACCCACAACCAGAATATCAGA-TTCTT---TAGTTTAATTATGATATCCTGGTTTTGTTTTCAGA-GCATTATGGCACTTTG-----AAAAAATAA i micMur3.chr16 C 0 I 3 s otoGar3.GL873537 22784473 364 + 28711273 TACCAGTCCTACTTCCGCACTATTGAGGAGCTCCAGCAGAAGGTGAG-G-AGTGGCTACCACGCTGCCAGTTTGGTGATCTGTTTCTCCCAGTT-TAGTTTACCAACTTCT---GAAT-GCATCTAAGGC-ATTCATAGTGAATGTTGAGAATGATGAAA----GTATCAAATTCA-TGGCTTACAAAGG--ACATCAACAAGTCTTAGAAAATATA-TTTTGGAACCAC---A-AGGGAAGGGTACAGGCTGGGGACTGAGTGAGGCATTAGACTAAAATCAGTC--AGTTGTCTTTTGT-----------TGTTTCTTACCCCAGATCAGAATATC-------------AGTTCAATGATGATATTCCGGTTTTGTTTTCAGA-GCATTATGACACTTTG-----AAAACATGG i otoGar3.GL873537 I 96815 I 3 s mm10.chr11 22053024 355 - 122082543 TACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGGTGAGCGGGACGGGCACCCTAGTGGCAGTTGAATGAGTTATTTATTCAAGTT-GAACATACTGCAGTCA---GAAT-GTAGCTGAGGCTGTTTGCAGCTAATGTTGGAACTGATGTAG----GT------TTCACAGGCCTAA------------AGGGAAGTTTTGAAAATCCT-TTAGGGAATCACCGTA-ACGAAAGTATGCAGATT------------CAGCATTCGAGCCATATTAGCCAGAGCTTCCTAACAT------------GCTTCTTACCGCAAACCAGAACAGGTCA-TTTTTAAAAAAGTTTCTTATGATGTCTCTTTCTTGCTTTCAGACAAATTATAACA--TTA-----AAAAAGTAC i mm10.chr11 C 0 I 3 s canFam3.chr9 21394390 370 + 61074082 TACCAGTCCTACTTCCGGACCATTGAGGAGCTCCAGCAGAAGGTGAG-GGGGTGGGCACCACATTGCCGATTTAGTTAAGTATTTATTTAAATG-AAACATACCGACTTCT---GAAT-GGATCTAAGACTATTCAAAGC-TGTG------ATAATAAAG----ACGCCGACTTCATTGGCTTAGGTAGGACACATCAAATCATCTTAGAGAATCTATTTGGAAAACCCT---ACAGGGAAGGCTATGGACTGGGG-CAGGATAAGACATTAGACTATGATCAGTCATAGCAATCCTACAT-----------TGCTTCTTACCTAAAAACAGAGTAACTAA-TTTTT---TAGTTCCATTATGATATCTTGGTCTTGGTTTTAGG-CC----TAAAGCCTTA-----AAAAAATAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 375110 364 - 852752 TACCAGTCCTACTTCCGGACCATCGAGGAGCTGCAGCAGAAGGTGAG-G---------------TGCCAACTGAGTGAACTATTTGTACACTTTGTAACATACTTACATTT---GCCTGGGGTCCAGTGCTATTCACAGCTGATGGTGAGAATGGGAAATTCTCACATGGAATTCACTCACTT-GGTAGGGAACTTTGAAGAGTCTTAGAAAATCTC-TT-------TAT---A----------------CTGACGATAGGCTAAGGTATCAGAGCAAAATCAGTCATGACAATGCTACATTGCTTCCAAAGAGCTTCTTACTTAAAACCAGAATATCTGC-TTCCT---TGGTTCTATTATGATATCCTGATTGTGTTTTCAGA-GCATTATAGCATCTTATTCTGGAATAATAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=1030159.000000 s hg38.chr17_GL383564v2_alt 71192 79 + 133151 GCACCTGAATTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTTCAAATATTTAAAGCCTTTCAAAGCTGTAGCAAAA s panTro5.chr17 16257778 79 + 83181570 GCACCTGAATTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTTCAAATATTTAAAGCCTTTCAAAGCTGTAGCAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16165242 79 + 83442489 GCACCTGAATTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTTCAAATATTTAAAGCCTTTCAAAGCTGTAGCAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4000292 79 + 4267968 GCACCTGAATTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTTCAAATATTTAAAGCCTTTCAAAGGTGTAGCAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1981233 79 - 2193130 gcaccTGAATTATT-T-TCTAT-GCTAAGAATTTCCTAAGCAAATCTTCAAATATTTAAAGCCTTTCAAAGCTATAGCAAAA i nomLeu3.chrUn_GL397460_1 I 576 C 0 s rheMac8.chr16 30052747 79 - 77216781 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTTCAGCAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27965357 79 - 80997621 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTTCAGCAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021589 79 + 10377808 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTTCAGCAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908715 79 - 8458610 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTTCAGCAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864466 79 + 75148670 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTTCAGCAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2094016 79 + 4244037 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTTCAGCAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2116106 79 + 4569836 GCACCTGATTTATT-T-TCTAT-GCTAAGAATTTCCTAAGTAAATCTCCAAATATTTAAAGCCTTTCAAAGCTGCAGCAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080461 79 - 159171411 GCACCTGAATTATT-T-TCTAT-GCTAAGAATTTTCTAATTAAATCTTCAAATATTTAAAGCCTTTCAAAGCTGTAGCAATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1799444 78 + 3513951 GCACCTGAATTATT-T-TCTAT-TCTAAGAATTTTCTAAGTAAATCTTCAAATATTTAAA-CCTTTCAAAGCTTTAGCAAAA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6963144 79 - 7032639 GCACCTGAATTATT-T-TCTAT-GCTAAGAATTTTCTAAGTAAATCTTCAAATATTTAAAGCCTTTCAAAGCTGTAGCAATA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35888542 80 - 65901067 GCACCCAAATTATT-TCTCTAT-GTTAGGGATTTCCTGAGTGAATCTTCAAATGTTTAAAGCCTTTCGAAGCTGTAGCAAAA i micMur3.chr16 I 3 I 774 s otoGar3.GL873537 22784840 80 + 28711273 GTACCTGAATTATT-TCTCTGT-GCTAGGGATTTCCTGAAAGAATCTTCACATGCTTAAAGCCTTTCAACGCTGTAGCAAAA i otoGar3.GL873537 I 3 C 0 s mm10.chr11 22053382 79 - 122082543 GCACCTGAATTAGT-T-TTTGGAGCTAAAGAATTTCTATATGAATCCTCAAATAGGTAAAGCATTTAGAATTTATAGCAAG- i mm10.chr11 I 3 C 0 s canFam3.chr9 21394760 66 + 61074082 GCCCCTGAATTATT-T-CTTGGAGCTAGGAATTTCCTAAGTAGATCCTCAAATATTTAAAG--------------AGCAAGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 375474 80 - 852752 GTAACTCAAATGTTCT-TTTGA-GCTAGGGATTTCCTGAAGGAATCCTCAGAATTTTAAAGCCTTTCAAAGCCACAGCAAGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=569818.000000 s hg38.chr17_GL383564v2_alt 71271 62 + 133151 TATAGCATTTATGGCAACACAAGAG-AGCTGTTGACTCCAG---------CAAT--------ATCTACAG-ACACATGGAC s panTro5.chr17 16257857 62 + 83181570 TATAGCATTTATGGCAACACAAGAG-AGCTGTTGACTCCAG---------CAAT--------ATCTACAG-ACACATGGAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16165321 62 + 83442489 TATAGCATTTATGGCAACACAAGAG-AGCTGTTGACTCCAG---------CAAT--------ATCTACAG-ACACATGGAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4000371 63 + 4267968 GATAGCATTTATGGCAACACAAGAGAAGCTGTTGACTCCAG---------CAAT--------ATCTACAG-ACACATGGAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1981312 62 - 2193130 GATAGCATTTATGGCAACACAAGAG-AGCTGTTGACTCCAG---------CAGT--------ATCTACAG-ACACATGGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052826 62 - 77216781 GATAGCATTTATGGCAACACAAGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27965436 62 - 80997621 GATAGCGTTTATGGCAACACAAGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021668 62 + 10377808 GATAGCGTTTATGGCAACACAAGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908794 60 - 8458610 G--AGCGTTTATGGCAACACAAGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864545 62 + 75148670 GATAGCGTTTATGGCAACACAGGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2094095 60 + 4244037 G--AGCGTTTATGGCAACACAAGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2116185 62 + 4569836 GATAGTGTTTATGGCAACACAAGAG-AGTCGTTGACTCCAG---------CAGT--------ATCTACAG-ACATATGGAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080540 62 - 159171411 GATAGTGTTTATAACAACATGAGAC-AGCCATTGACTCCAG---------AAGT--------ATCTACAG-ACACATGGAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1799522 62 + 3513951 GATAGCATTTATAACAACACAAGAC-AGCCATTGACTCCAA---------AAGT--------ATCTGCAG-ACACATGGAC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6963223 62 - 7032639 GATAGCGTTTATAACAACATGAGAC-AGTCATTGACTCCAG---------AAGT--------ATCTACAG-ACACATGGAC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22784920 68 + 28711273 GACAGTGTCTATGGCTAGGAAACAG-AGCCACTGACTCCAG---------AAATTAATTAGCATGTACAG-ACAACTG--C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22053461 60 - 122082543 --TATAGTTAAAGACAGTTTTGGTA-AACCAGGAGCCCCAC---------TAac--------acacacac-acacacacac i mm10.chr11 C 0 I 675 s canFam3.chr9 21394826 63 + 61074082 GACTGTATCCATAGAAAAGCAAAAG-AGCTATTGACCCCAT---------AAGC--------CTCACTAATATACATAGAC i canFam3.chr9 C 0 I 7 s dasNov3.JH570468 375554 67 - 852752 ----CTGTTTATGGCCAAGCATGAA-AGCCTTTTACTCCTGGAGCCTTGCTAAT--------AATCAGAG-ATGTATATac i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35888622 774 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=1630946.000000 s hg38.chr17_GL383564v2_alt 71333 161 + 133151 CATCCTCTAGAGCAGCCATGTGTACAGATGACAATATGGGGCCATCTGTTCTGGAAGAGAAGTAGATATAAGTAAAGAGTCCACAGAGAATTGGGACTgaatacctggtgtaggtttgggaggg-atcccagaagaggcaa----tgtctgagtggggtttgaagg- s panTro5.chr17 16257919 161 + 83181570 CATCCTCTAGAGCAGCCATGTGTACACATGACAATATGGGGCCATCCATTCTGGAAGAGAAGTAGATATAAGTAAAGAGTCCACAGAGAATTGGGACTgaatacctggtgtaggtttgggaggg-atcccagaagaggcaa----tgtctgagtggggtttgaagg- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16165383 161 + 83442489 CATCCTCTAGAGCAGCCATGTGTACACATGACAATATGGGGCCATCCATTCTGGAagagaagtagatataagtaaagagtccacagagaattgggactgaatacctggtgtaggtttgggaggg-atcccagaagaggcaa----tgtctgagtggggtttgaagg- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4000434 161 + 4267968 CATCCTCTAGAGcagccatgtgtacagatgacaatatggggccatccattctggaagagaagtagatataagtaaagagtccacagagaattgggactgaatacctggtgtaggtttgggaggg-atcccagaagaggcaa----tatctgagtggggtttgaagg- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1981374 161 - 2193130 CATCCTCTAGAGcagccatgtatacagatgacaatatggggccatccattctggaagagaagtagatataagcaaagagtccacagagaattgggactgaataccgggtgtaggtttgggaggg-atcctggaagaggcaa----tatctgagtggggtttgaagg- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30052888 161 - 77216781 CATCCTCTAGAGcagccatgtatacagatgacaatatgggtccatccattctggaggagaagtggatataagtaaagagtccacagagaattgggactggatacctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtagggtttgaagg- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27965498 161 - 80997621 CATCCTCTAGAGCAGCCATGTATACAGATGACAATATGGGTCCATCCATTCTGGAGGAGAAGTGGATATAAGTAAAGAGTCCACAGAGAATTGGGACTGGATAcctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtagggtttgaagg- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021730 161 + 10377808 CATCCTCTAGAGCAGCCATGTATACAGATGACAATATGGGTCCATCCATTCTGGAGGAGAAGTGGATATAAGTAAAGAGTCCACAGAGAATTGGGACTGGATAcctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtagggtttgaagg- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1908854 161 - 8458610 CATCCTCTAGAGcagccatgtatacagatgacaatatgggtccatccattctggaggagaagtggatataagtaaagagtccacagagaattgggactggatacctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtagggtttgaagg- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864607 161 + 75148670 CATCCTCTAGAGCAGCCATGTATACAGATGACAATATGGGGCCATCCATTCTGGAGGAGAAGTggatataaataaagagtccacagagaattgggactgaatacctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtagggtttgaagg- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2094155 161 + 4244037 CATCCTCTAGAGCAGCCATGTATACAGATGACAATATGGGGCCATCCATTCTGGAGGAGAAGTggatataagtaaggagtccacagagaattgggactggatacctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtagggtttgaagg- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2116247 161 + 4569836 CATCCTCTAGAGcagccatgtatacagatgacaatatggggccatccattctggaggagaagtggatataagtaaagagtccacagagaattgggactgaatacctggtgtaggttagggaggg-atcccagaagaggcaa----tatctgagtaaggtttgaagg- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080602 166 - 159171411 CATCCTCTAGAGCATCCATGTATACAGATGACAATTCCGGGCCATACATTCTGGAGGAGAAGTGGGAGAGAATAAAGAGTCCACAGAGAATTGGGATGgaatacctggtgtaggtttgggagggaatcctggaagaggcaatatctatctgagcagggtttgaagg- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1799584 162 + 3513951 CATCCTCTAGAGCATCCATGTATACAGATGACAGTTTGGGGCCATACATTCTGGAGGAGAAGTggatagaagtaaagagtccacagagaattgggatggagtacctggtgcaggtttgggagggaatcccggaagaggcaa----tatctgagcggggtttgaagg- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6963285 162 - 7032639 CATCCTCTGGAGCATCCATGTATACAGATGACAATTAGGGGCCACACATTCTGGAGGAGAAGTGGAGAGAAGTAAAGAGTCcacagagaattgggatggaatacctggtgtaggtttgggagggaatcccggaagaggcaa----tatctgaatggggtttgaagg- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22784988 98 + 28711273 CATCCTCTAGAGCAGGTGTGGACACAGAGGACAGTACAGGGCCATACAAGCAGGACAGTC--TGGGTGTAGGTAAAGAGTCCACATAG-----------------------------GGGTGGG----------------A----CTTC------------------ i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21394896 157 + 61074082 CATCCATTAGAGCAA----GTATGCAGGTGAGAATTTAAGGCCAGAAATGCAAGCATAGAGGTGAAGATAAAGAAAGAGTCAAAacagaggtgggacttgatacatggtgtagattagggaagacttcccagaagagg-aa----tatctgagcagggcttgatgg- i canFam3.chr9 I 7 C 0 s dasNov3.JH570468 375621 159 - 852752 tgtccactgaagcagatgtgtaaataagtgacaatagaggaccatacgtgcaaaaggagaagtgggt----gtaaatagtcatcatagaggtgggacttaatccatggtggaggatagggtgggtgtcccggaggaggtga----tatctgagttgggttttgatgg i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22053521 675 - 122082543 I e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35888622 774 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=5453440.000000 s hg38.chr17_GL383564v2_alt 71494 567 + 133151 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTGGGAGGGAATTGA----CTGCCCACTGTTCTGTAGATCTGGAAAATTAGATGCCAGAAAGGGGTTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAg-tgttaggcacagtgct------ggggtgggggataatgtactgagtaagacagtctccttccttcaggagctcacagtc-taacaggggagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttatTGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCT--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TACAGCAAGAAGC-----TTTTTGCAAAGGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTTA-GCAGG--TGGAAT-------------GTGTTggataaccaagttgttctg---gcttgcctgggatttttccc-attttagcatcccagaaac-cc-ct-cagtcctaagttaactgggatggttgg-tcacccAACCGAAGGG------TTGGATACCC---AGTAACCT-AATTATTGCAGGAAG-CCAGAAGCAGAT s panTro5.chr17 16258080 581 + 83181570 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTGGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAATTAGATGCCAGAAAGGGGTTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAg-tgttaggcacagtgct------ggagtgggggataatgtactgagtaagatggtctccttccttcaggagctcacagtc-taacaggggagatagatgtggaaacaaaatgatcaca-caaaagtcataagaagtgttattgattaagt-------------------------------------------------------------------atgtgggtta--caca--------------------------------------------------------------------------------------------------------aggggtct--------tgcta-gtgggtgagggcattctggg----------tagagcaagaagc-----tttttgcaaagacatgaacaagggcagtatgaggggagagtggagagaagtta-gcagg--tggaacaagggtggtatgagtgttggataaccaagtagttctg---gcttgcctgggatttttccc-attttagcatcccaggaac-cc-ct-cagtcctaagtaaactgtgatggttgg-tcacccAACCAAAGGG------TTGGATACCC---AGTAACCTCAATTATTGCAGGAAG-CCAGAAGCAGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16165544 581 + 83442489 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTGGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAATTAGATGCCAGAAAGGGGTTGTGCTAT-TTGAATAtcattcatttatttac-ccagagttggagag-tgttaggcacagtgct------ggagtgggggataatgtactgagtaagatggtctccttccttcaggagctcacagtc-taacaggggagatagatgtggaaacaaaatgatcaca-caaaagtcataagaagtgttattgattaagt-------------------------------------------------------------------atgtgggtta--caca--------------------------------------------------------------------------------------------------------aggggtct--------tgcta-gtgggtgagggcattctggg----------tagagcaagaagc-----tttttgcaaagacatgaacaagggcaatatgaggggagagtggagagaagtta-gcagg--tggaacaagggtggtatgagtgttggataaccaagttgttctg---gcttgcctgggatttttccc-attttagcatcccaggaac-cc-ct-cagtcctaagtaaactgtgatggttgg-tcacccAACCAAAGGG------TTGGATACCC---AGTAACCTCAATTATTGCAGGAAG-CCAGAAGCAGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4000595 580 + 4267968 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTGGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAATTAGATGCCAGAAAGGGGTTGTGCTAT-TTGAATAtcattcatttatttac-ccagagttggagag-tgttaggcacagtgct------ggggtgggagataatgtactgagtaagacagtctccttccttcaggagctcacagtc-taacaggggagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttattgattaagt-------------------------------------------------------------------atgtgggtta--caca--------------------------------------------------------------------------------------------------------aggggtct--------tgcta-gtgggtgagggcattctggg----------tacagcaagaagc-----tttttgtaaaggcatgaacaagggcaatatgaggggagagtggagagaagtta-gcagg--tggaacaaaggtggtatgagtgttggataaccaagttgttctg---gcttgcctgggatttttccc-attttagcatcccaggaac-cc-ct-cagtcctaagtaaactgggatggttgg-tcacccAACCGAAGGG------TTGGATACCC---ACTAACCT-GATTATTGCAGGAAG-CCAGAAGCAGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1981535 582 - 2193130 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTGGGATGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGTAGATGCCAGAAAGGGGTTGTGCTAT-TTGAATAtcattcgtttatttac-ccagagttggcgag-tgttaggcacagtgct------ggggtgggggacaatgtcctgagtaagacggtctccttccttcaggagctcacagtc-taacaggggagatagatgtggaaacaaaaggatcaca-caaaggtcataaggagtgtcatTGATTAAGT-------------------------------------------------------------------ATGTAGGTTA--CACA--------------------------------------------------------------------------------------------------------AGCGGTCT--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCAAAGGCATGAACAAGGGCAATATAAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGGTGGTTTGAGTGTTggataaccaacttgttctg---gcttgcctgggatttttccc-attttagcatcccaggaac-cc-ct-cagtcctaagtaaactgggatggttggtTTACTTTATGCAAGGG------TTGGATACTC---AGTATCCTCAATTATTGCAGGAAG-CCAGAAGCAGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30053049 587 - 77216781 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCattcatttatttac-ccagagttggagag-tattaggcacagtgct------gggatgggggataatatactgagtaaaatggtctctttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttatCGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCCAACGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATGTGTGtgggataaccaacttgttctg---gcttgcctgggacttttccc-attttagcatcccaggaaa-cc-ct-cagtcctgagtaaactgggatgattgg-tcacccAACCCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCAGAAGCAGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27965659 587 - 80997621 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAG-TATTAGGCACAgtgct------gggatgggggataatatactgagtaaaatggtctctttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttatCGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCCAACGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATGTGTGtgggataaccaacttgttctg---gcttgcctgggacttttccc-attttagcatcccaggaaa-cc-ct-cagtcctgagtaaactgggatgattgg-tcacccAACCCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCAGAAGCAGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2021891 587 + 10377808 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAg-tattaggcacagtgct------gggatgggggataatatactgagtaaaatggtctctttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttatCGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCCAACGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATGTGTGtgggataaccaacttgttctg---gcttgcctgggacttttccc-attttagcatcccaggaaa-cc-ct-cagtcctgagtaaactgggatgattgg-tcacccAACCCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCAGAAGCAGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1909015 587 - 8458610 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCattcatttatttac-ccagagttggagag-tattaggcacagtgct------gggatgggggataatatactgagtaagatggtctcgttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgtcatCGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCCAACGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATATGTGtgggataaccaacttgttctg---gcttgcctgggacttttccc-attttagcatcccaggaac-cc-ct-cagtcctgagtaaaccgggataattgg-tcacccAACCCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCAGAAGCAGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64864768 586 + 75148670 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGTAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAG-TATTAGGCACAgtgct------gggatgggggataatatactgagtaagatggtctctttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataa-aagtgttatCGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGATA-GTGGGTGAGGGCATTCTAGG----------TAGAGCAAGAAGC-----TTTTTGCAAAGGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATGTGTGtgggataaccaacttgttctg---gcttgcccgggacttttccc-attttagcatcccaggaac-cc-ct-cagtcctgagtaaactgggatgattgg-tcacccAACCCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCAGAAGCAGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2094316 587 + 4244037 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAg-tattaggcacagtgct------gggatgggggataatatactgagtaagatggtctctttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgtcatCGATTAAGT-------------------------------------------------------------------ATGTGGGTTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGCTA-GTGGGTGAGGGCATTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCCAACGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATGTGTGtgggataaccaacttgttctg---gcttgcctgggacttttccc-attttagcatcccaggaac-cc-ct-cagtcctgagtaaaccgggatgattgg-tcacccAACCCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCAGAAGCAGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2116408 587 + 4569836 atgagtgggagttTATATCCAATTGTACAAGCCCTTGATTCTTGGAGGGAATTGA----CTGTCCACTGTTCTGTAGATCTGGAAAAGTAGATGCCAGGAAAGGGTTGTGCTAT-TTGAATATCattcatttatttac-ccagagttggagag-tattaggcacagtgct------gggatgggggataatatactgagtaagatggtctctttccttcaggagctcacagtc-taacagggcagatagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttatCGATTAAGT-------------------------------------------------------------------ATGTGGGCTA--CACA--------------------------------------------------------------------------------------------------------AGGGGTCC--------TGCTA-GTGGGTGAGGGCACTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCAAAGGCATGAACAAGGGCAATATGAGGGGAGAGTGGAGAGAAGTCA-GCAGG--TGGAACAAAGTTGGTATGAGTGtgggataaccaacttgttctg---gcttgcctgggactttcccc-attttagcatcccaggaac-cc-ct-cagtcctgagtaaactgggatgattgg-tcaccccaCTCTTGGGTGACCCTTGGATGCCC---AGTAACCTCAATTATTGCAGGAAG-TCGGAAGCAGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46080768 584 - 159171411 atgagtgggagtttatagccaATCGTACAAGCCCTTGATTCTTGGAGGAAATTGA----CTAACCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGAAAGGGATTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAg-tatcaggcacagtgct------ggggtcggggataaaataatgagtaagacggtctctttccttcaggagctcacagtc-taaca-gggagtcagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttatTGAATAAGT-------------------------------------------------------------------ATGTGAGTTAAGCACA-----------------------------------------------------------------------------------------------TAC------CGAGGTCT--------TGCTA-GTGGGTGAGGGTGTTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCAAAGGCACGAACATGGGCAATATGAGGGGAGAGT-GAGGGAAGTCA-ACACG--TGGAACAAAGGTGGTATGAGTGTTGGATA---ATcttgttctg---gcttgcctgggattcttccc-attttagcatcctaggaac-cc-ct-ctgtcctaaggaaactcagatggttgg-tcacGCAACATGAGGG------TTGGATACCCAGTAGTAACCTCAAATATTTCAGGGAG-CCAGAAACAGAT i calJac3.chr5 C 0 I 141 s saiBol1.JH378271 1799746 685 + 3513951 ataagtgggagttTATATCCAATCCTACAAGCCCTTGATTCTTGGAGGAAATTGA----CTAACCACTGTTCTGTAGATCTGGAAATGCAGATGCCAGAAGGGGATTGTGCTAT-TTGAATATCATTCATTTATTTAC-CCAGAGTTGGAGAg-tattaggcacagtgct------ggggtcggggatgaagtactgagtaagacggtctttttccttcaggagctcactgtcttaacaggggagtcagatgtggaaacaaaatcatcaca-cagaggtcataagaagtgttatTGAATAAGT-------------------------------------------------------------------ATGTGGGTTAAACACATACTGAGGTCTTGCTAGTGGGTGAGGGCATTCTGGGTGGAGCAAGAAACTTTTTGCAAAGGCAAAAAGTATGAGTGAGTATGTGGGTTATACATGTAC------TGAGGTCT--------TGCTA-GTGGGTGAGGGTGTTCTGGG----------TAGAACAAGAAGC-----TTTTTGCAAAGGCATGAACATGGGCAATGTGAGGGGAGAGTAGAGAGAAGTCA-ACAGG--TGGAACAGAGGTGGTATGAATGTTggataaccaccttgttctg---gcttgcctgggattcttcac-attttagcatcctaggaac-cc-ct-cagtcctaaaaaaactgggatggttgg-tcacGCAACATGAGGG------TTGGATACCCAGTAGTAACCTCAAATATTGCAGGAAG-CCAGAAACAGGT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6963447 589 - 7032639 atgagtgggagttTATATCCAATCGTACAAGCCTTTGATTCTTGGAGGAAATTGA----CTAACCACTGTTCTGTAGATCTGGAAAAGCAGATGCCAGAACAGGATTGTGCTAT-TTGAATAtcattcatttatttac-ccagagttggagag-tattaggcacagtgct------ggggtgggggataaagtactgagtaagacggtctctttcattcaggagctcccagtc-taacagtggagtcagatgtggaaacaaaatgatcaca-caaaggtcataagaagtgttattgaataagt-------------------------------------------------------------------acgtgggttaagcaca-----------------------------------------------------------------------------------------------tac------tgaggtct--------tgcta-gtgggtgagggtgtTCTGGG----------TAGAGCAAGAAGC-----TTTTTGCAAAGGCACGAACTTGGGCGATATGAGGGGAGAGTGGAGAGAAGTCA-ACAGG--TGGATCAAAGGTGGTATGAGTGTTggataaccaccttgttctg---gcttgcctgggattcttccc-attttagcatcctcggaag-cg-ct-cagtcctaaggaaactgggatggttgg-tcaTGCAACATGAGGG------CTGGATACCCAGTAGTAACCTCAAATATTGCAGGAAG-CCAGAAACAGAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22785086 268 + 28711273 ----------------------------------------------------------------------------------------------------------------AT-TGAAATGTCACT--------------------------------------------------------GGAAAAATGT-----------------------------------------AAACAG-----------------------------------------------------------------------------------------------------------------------------------CATGGATCA--CACC---------------------------------------------------------------------------------------------------------GGAGTCC--------TGTTA--TGTAAAGGGGAATCCAAGG----------TAGAAGGAGAGGC-----TCTGTACACAAGAATGGGCAAGGGCAATATGAGGGTAG---------------------------------------------------------Tttgtgctg---gtttgcctgggactgtcctg-gttttagcatcccaggaac-ccttt-caggcctaagcaaactgagacagctgg-tcactctaCTT-----TGACCTGTAGCTACCC---AGTAAGCTCAGTTCCTGATGGAAG-CCGGAGGCTGAC i otoGar3.GL873537 C 0 I 4 s mm10.chr11 22054196 597 - 122082543 ACAAATAGGAGTCTCTATCTGACTGTGCAAGCCATTGGTTCCTGGAGGGAACTGT----CTGTCTGCTGTCCTGTAGTCCCTACAAAGTGAATATCCAAAAGGAGTAGTATGAC-TTGAGTATCCtt-atctatttaagtcacatttggtgaa-catttggcaaagttctagggtcagggtcaggggtaaaatgctgagaaagagaatctcctgtcagcaggagatcacagcc-taatagggaggagaGATGTGGGGAAGAGAAGGCACAG-CAAAGG---GAAGCAATGCTGT------GGG-------------------------------------------------------------------AAACGAGTAA--CACA-----------------------------------------------------------------------------------------------CATGGAAGAAGTGGCCCTCCATGGATGCTG-GAAAGGAAGGGA--TGTGGG----------TTCTACAAGGAGCAGACATTTTACCTAAAGCACATGCACAG------TGCCAGCAGAACGGACAGAGGGCA-GCAGGGTTCTAACAGAGGTGGTGTGAG---AGGATAATAAACTCATCCTGTATATCTGCAGTGTATTGTGCCCAATTTTACCATCCCAGGAATGTT-CT-CCATTCTAAGCGTACAGGGATCTCTGG-CCACACGACCTGAGGC------TTGATCACCC---AGTAGACTCAGTTCCTACAGGAGGATTAGAAACAGCC i mm10.chr11 I 675 I 4 s canFam3.chr9 21395053 573 + 61074082 atgaggaggggttTATATTCAATGGCACAAACCTTTGATTCTCCAAGGAGATTAC----CTGTCCACTGCTCAGTAATGCTGGCAAAGTGAATGCCAGAAAGGGAC-ATGCAAT-TTGAGGAGCATGCATTCATTTGC-CCTcatttactgaa-tacaaggcacagtgct------tgagtgagagatcaagtgcagagtaaggcagtctctttccttcaggagctcacagtc-taataggggagacagacatgg-aacacatggctagag-tgaagg---ggagaagcataactggctaagtgcaaagcactgtgggggcgtgtggaggaagtgaccccctgcaggaggagctaggggctggagggggaatgtggatca--tgga--------------------------------------------------------------------------------------------------------ag-ggtct--------tgttaggtgtgtgaggacatcctagggcattccagatagagggagaagc-----tctgtgcaaaagcATGGACGAG-------------------------------------------------------------------------------------GTTTGGCTGGGATTTTTCTG-GGTTTAGCATCTCAGGAGC-CC-CCATATTTCTGAGCAAATGGGGAC-ACAGG-TCACTTTAAGGGAGG-------CCCAATACCC---AGTATGCTCAATTTCTGCAGGAAG-CCAGAGGCAGAC i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 375780 594 - 852752 agcagcaggagtttatagccaACAGTCAAAGCCCTT-ATTCTTGGAGGGAATTGCTGTTCCCTCCATTGTTCTGTTGTTTTGGCAAAGCAAATGCCAGAAAGAGGCTGTGCAATATTGAA--------ATTCATGCAT-CCACTTTTAGCAAGCCCTTAGGCAGGGTTCT-------GGGTCAGGGAGAAAGTACTACGTTAGGCAGTCTTTTTCCTTCAGGAGCTCATAGTC-TAGTAGTGGAGA-------------ACAATGACCATAGTGAATGTGATGAGAAGCATCACTGGCTAACTGCAAAGGACTGTGGGAGCACATGGAGGAAGTGACCACCTGGAGGAGCTGGGGAAGAGGGGAA-----AAGTGGGTTG--TGCA--------------------------------------------------------------------------------------------------------AG-GATCT--------TGCTAGGTGGGTAAGGGCA------G----------CTGAGC-----GC-----ATTCC----AAGTAGGAAGAAGGGTAATGTGTAGGGCCAGTGGGGAGGGGCCATGTGGC--TGGAATGAAGGTGTGACAGG-Gtaaggtgactgacttgtcac----atgtgccaggaactttccca-gttttagcagc-----aaa-cc-ct-caggcccaagcaaactgggatggctgg-tcaccccaGGTGAGGC------TTGGCAATCC---AGTATACACAGTTCCTGTAGGAAG------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35888622 774 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=299000.000000 s hg38.chr17_GL383564v2_alt 72061 33 + 133151 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- s panTro5.chr17 16258661 33 + 83181570 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166125 33 + 83442489 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001175 33 + 4267968 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982117 33 - 2193130 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30053636 33 - 77216781 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966246 33 - 80997621 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2022478 33 + 10377808 AAGAATAGAATTCATG---A-TGAA--------TTCACAT-----TGGTT----- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1909602 33 - 8458610 AAGAATAGAATTCATG---A-CGAA--------TTCACAT-----TGGTT----- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64865354 33 + 75148670 AAGAATAGAATTCACG---A-TGAA--------TTCACAT-----TGGTT----- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2094903 33 + 4244037 AAGAATAGAATTCACG---A-TGAA--------TTCACAT-----TGTTT----- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2116995 33 + 4569836 AAGAATGGAATTCATA---A-TGAA--------TTCACAT-----TGGTT----- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081493 33 - 159171411 GAAAAAAGAATTCATG---A-TGAA--------TTAACAT-----TGGCT----- i calJac3.chr5 I 141 C 0 s saiBol1.JH378271 1800431 28 + 3513951 -----AAGAATTCATG---A-TGAA--------TTCACAT-----TGGCT----- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964036 28 - 7032639 -----AAGAATTCATG---A-TGAA--------TTCACAT-----TGGCT----- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22785358 41 + 28711273 AAAAGTAGTGGTCATG---A-CAAAGGGCACATTTCACCT-----TGACT----- i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22054797 28 - 122082543 AAGAGTAGAAATCATG---ACTGCG--------TCCACT---------------- i mm10.chr11 I 4 C 0 s canFam3.chr9 21395630 39 + 61074082 GGGAGAAGAATTCATG---A-CAAAG-------GACACATTTCCCTGATT----- i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 376374 41 - 852752 AAGGGAAGAATTCATGCCCA-AAGA--------TTCATTT-----TCACTTGACT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35888622 774 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=4690321.000000 s hg38.chr17_GL383564v2_alt 72094 356 + 133151 GTCCTGGTTTTGAAATGATCAGTTTTATGATCAAATCCTCC---------------------TTTTATCTCAGAGCTGAAAATCTGAAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTAGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcagagcagtctagtaac-ggacaggctgaattacaaagtgatgagctccctatcctggaa-tgtggaagcagaaatt-tc-------t s panTro5.chr17 16258694 355 + 83181570 GTCC-GGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCTCAGAGCTGAAAATCTGCAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTAGAATAACCCATTTCACGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcagagcagtctagtaat-ggacaggctgaattacaaagtgatgagctccctatcctggaa-tgtggaagcagaagtt-tc-------t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166158 355 + 83442489 GTCC-GGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCTCAGAGCTGAAAATCTGCAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTAGAATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcagagcagtctagtaat-ggacaggctgaattacaaagtgatgagctccctatcctggaa-tgtggaagcagaagtt-tc-------t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001208 356 + 4267968 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCTCAGAGCTGAAAATCTGAAAGGACTCAAAGCTATTTGGGAAGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTAGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcagagcagtctagtaac-ggacaggctgaattacaaagtgatgagctccctatcctggaa-tgtggaagcagaaatt-tc-------t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982150 363 - 2193130 TTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCTCAGAGCTGAAAATCTGAAAGGACTCAAAGCGGTTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTAGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctgaccgtcagagcagtctagtaat-gggcaggctgaattgcaaagtgatgagctccctattctggaa-tgtggaagcagaagtt-tctggatgat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30053669 364 - 77216781 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGGAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTGGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcacagcggtctcataat-ggacaggctgaattgcaaagtgatgagctccctatcctggaagggtggaagaagaaatt-tctggatgat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966279 364 - 80997621 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGGAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTGGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcacagcggtctcataat-ggacaggctgaattgcaaagtgatgagctccctatcctggaagggtggaagcagaaatt-tctggatgat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2022511 364 + 10377808 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGGAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTGGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcacagcggtctcataat-ggacaggctgaattgcaaagtgatgagctccctatcctggaagggtggaagcagaaatt-tctggatgat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1909635 364 - 8458610 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGGAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTGGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcacagcggtctcataat-ggacaggctgaattgcaaagtgatgagctccctatcctggaagggtggaagcagaaatt-tctggatgat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64865387 364 + 75148670 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCAGAAAATCTGGAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTGGTATAACCCATTTCATGATTAATCCCATCCTCAGATCCTGTGCAGCAAGTCAGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-gtttcctgaccatcagagcggtctcataat-ggacaggctgaattgcaaagtgatgagctccctatcctggaagtgtggaagcagaaatt-tctggatgat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2094936 364 + 4244037 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGGAAGGACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTCTTGGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcacagcggtctcataat-ggacaggctgaattgcaaagtgatgagctccctatcctggaagggtggaagcagaaatt-tctggatgat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117028 363 + 4569836 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGGAAGCACTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAAGGCACAAGGCAT---TTC-TGGTATAACCCATTTCATGATTAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcagagcggtctcataat-ggacaggctgaatcgcaaagtgatgagctccctatcctggaagtgtggaagcagaaatt-tctggatgat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081526 365 - 159171411 GTCCTGGTTTTGAAATGGTCCGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTCAAAGTTCTCTAAGCTATTTGGGAGGAGTGTG-GCTGAAAGAAAATAGCATTT-CACTTTAGGGCACAAGGCAT---TTCTTAGTATAACCCATTTCATGATCGATCCTATCCCCAGATCCTGTGCGGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCTACAGATGACTTCAGAACCaagtaaga-ttttcctaaccctcagagcagtctagtaatgggacaggctgaattgcaaagtggtgagctccatatcctgggagtgtgcaagcagaagct-tctagatgat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1800459 365 + 3513951 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGAAAGGTCTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAGGGCACAAGGCAT---TTCTTAGTATAACTCATTTCATGATCAATCCTATCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTACAGATCGACAATGCCAAGCTGGCTACAGATGACTTCAGAACAaagtaaga-ttttcctaaccctcagagcagtctagtaatgggacaggctgaattacaaagtgatgaactccatatcctgggagtgcgcaagcagaagct-tctggacgat i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964064 365 - 7032639 GTCCTGGTTTTGAAATGGTCAGTTTTATGATCAAATCCTCC---------------------TTTTATCCCAGAGCTGAAAATCTGAAAGGTCTCAAAGCTATTTGGGAGGAATGTG-GCTGAAAGAAAATAGCATTT-CACTTTAGGGCACAAGGCAT---TTCTTAGTATAACCCATTTCATGATCAATCCTGTCCCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTACAGATGACTTCAGAACCaagtaaga-ttttcctaaccatcaaagcagtctagtaatgggacaggctgaattgcaaagtgatgagctgcatatcctgggagtgcgcaagcagaagct-tctggatgat i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35889396 361 - 65901067 GTCCTGGTTTTGAAACGATCAGTTCTATGAATGCATCTTCC---------------------TTTTATCCCCAAACTGAAAATCTGAAAGGACTCAAAGCTATTTGGAAGGAATATG-GCTGGAAGAAAATAGCTTTT-TGCTTTGAGGCACAGGGCAATCCTTCTTGGTATGACGCATTTCACAATTCGTCCTGTCCCCAGATCCTGTGCAGCAAGTCCGAGAACGCCAGGCTGGTGGTGCAGATCGACAACGCCAAGCTGGCCGCCGATGACTTCAGGACCaagtaaga-gttttctaatgatcagagcggtctagtaacaagacaggtggaaccacaaggtgatgaacttcctatcctgggaatgtgcaaggagaagct-tcc------- i micMur3.chr16 I 774 I 7 s otoGar3.GL873537 22785399 343 + 28711273 GTTCTGGTTTTGCAATGATCAGTTCTGTGAATGAA---TCC---------------------TTTTATCTCCAAACTGAAAATTTGAAAGGACTCAAAGCTATTTGAAAGGATTATG-CCTGCAAGAAAACAACTTTT-CGTTTGACAGCATAAGGCATTCCTTCTCAGGACAACTCATTTCCCAACTCACCCTGTTTGCAGATCCTGTGTAGCAAGTCTGAGGACGCCAGGTTGTTGGTCCAGATTGACAATGCCAAGCTGGCCGCTGATGACTTCAGGACCAAGTAAGG-TGTTTCTGATGATTGG---------------AGACAGATTGAACTGTGAAGTGATAAACTTCCTATCCCAGGAGTGTGCAAGGAGATCCT-TCT------- i otoGar3.GL873537 C 0 I 67 s mm10.chr11 22054825 328 - 122082543 GTCATGGGAGAAAAAACACTGGCATTCAAACCACATGCTTCCTTCATGGCATCTGTGTTACATTTTACCCCAGTGCTTCAAACCCT----GCTTTAGAGCCAATGTGAAG------A-TCTGAAAGGGCACAG-----------GAAGGAATAATGTAT---CTCATGTCACAATCCATCCCCTG--------------CAGATTCTCTGTGGCAAGTCTGAGAACGGCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCTGATGACTTCAGGACCAAGTAAGA-CACCTGTAGTGACCAGAGCAGCCCAGTGGG-----AGGATGGATTGCAAAGTGATG-GCTCTTTGTTCTGAGAATGTGCCAG------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21395669 361 + 61074082 GTTTTAGTTTTGAAATGAACAGTGCTTTTAATGAATTCTCC---------------------TTTTGTCCCCAAACTGAACATCTGAGAAAACTCAAAGCTATTTGGAAAGAGTGTGTGTTTGAAAAAAATGGCCTTT-CGTTATAAAACAGAAGGCATTCCTTCTTAATAGAATTCATTTTATAATGAATCCTGTCTGCAGATCCTGTGCAGCAAGTCTGAGAACGCCAGGCTGGTGGTGCAGATCGATAATGCCAAACTGGCTGCAGATGACTTCAGGACCaagtaagattttttctaatgatcagagcaatttagtaat-ggacaggctggattgcaacatgatgaactc--tgtcctgggcacgtgcaagcagcagttgtct------- i canFam3.chr9 C 0 I 8 s dasNov3.JH570468 376415 358 - 852752 GTTCTGGT-TTGAAATGACCAGTTCTATAAGTTAGTCCTCC---------------------TTTTATCCTAAACCTGAAAATCTGAAAGGACTCAAAGCTGTTTGTGAGAGATGTG-GCTGGAATAAAATAGCTTTCACATTTTAAGGAACAAGACATTTCTTCTTTGCGTGAC---------AATCAATATCGTCCACAGATCCTGACTGGCAAGTCTGAGAACGCCAGGCTGGTGGTACAGATTGACAATGCCAAGCTGGCTGCAGATGACTTCAGAACCaagtaagc-cttttctaatgatcaaagcagtcctggaatggggcaggctagattgcaaagtgatggactc--tgtccctggagtgtgcatgcagaAATGATCTGGAAGAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=196895.000000 s hg38.chr17_GL383564v2_alt 72450 15 + 133151 attgggaggattctt s panTro5.chr17 16259049 15 + 83181570 attgggaagattctt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166513 15 + 83442489 attgggaagattctt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001564 15 + 4267968 attgggaggattctt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982513 15 - 2193130 attgggaggattctt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054033 15 - 77216781 attgggaggattctt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966643 15 - 80997621 attgggaggattctt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2022875 15 + 10377808 attgggaggattctt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1909999 15 - 8458610 attgggaggattctt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64865751 15 + 75148670 attgggaggattctt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095300 15 + 4244037 attgggaggattctt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117391 15 + 4569836 attgggaggattcct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081891 15 - 159171411 aatgggaggattcct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1800824 15 + 3513951 attgggaggattctt i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964429 15 - 7032639 attgggaggattctt i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35889764 15 - 65901067 attgggaggattctt i micMur3.chr16 I 7 C 0 s canFam3.chr9 21396038 15 + 61074082 attgggaagattctt i canFam3.chr9 I 8 C 0 s dasNov3.JH570468 376773 15 - 852752 ATTGGGATGAGTCTT i dasNov3.JH570468 C 0 I 797 e mm10.chr11 22055153 0 - 122082543 C e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e otoGar3.GL873537 22785742 67 + 28711273 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=282660.000000 s hg38.chr17_GL383564v2_alt 72465 29 + 133151 gcattgggttaggattaggttaaatgtca s panTro5.chr17 16259064 29 + 83181570 gcattgggttaggattaggttaaatgtca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166528 29 + 83442489 gcattgggttaggattaggttaaatgtca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001579 29 + 4267968 gcattgggttaggattaggttaaatgtca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982528 29 - 2193130 gcattgggttaggattaggttaaatgtca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054048 29 - 77216781 gtattgggttaggattaggttaaatgtca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966658 29 - 80997621 gtattgggttaggattaggttaaatgtca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2022890 29 + 10377808 gtattgggttaggattaggttaaatgtca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910014 29 - 8458610 gtattgggttaggattaggttaaatgtca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64865766 29 + 75148670 gtattgggttaggattaggttaaatgtca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095315 29 + 4244037 gtattgggttaggattaggttaaatgtca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117406 29 + 4569836 gtattgggttaagattaggttaaatgtca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081906 29 - 159171411 gtattaggttagcgttaagttaaatgtca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1800839 29 + 3513951 gcattagattagggttaggttaaatgtca i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964444 29 - 7032639 gcattaggttagggttaggttaaatgtca i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35889779 29 - 65901067 gtattggtttagagttaggtgaaatgtca i micMur3.chr16 C 0 I 795 s mm10.chr11 22055153 1 - 122082543 -------------------------G--- i mm10.chr11 C 0 C 0 s canFam3.chr9 21396053 26 + 61074082 gcattAAGTTAT--TTGGGTTAAAAGTC- i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e dasNov3.JH570468 376788 797 - 852752 I e otoGar3.GL873537 22785742 67 + 28711273 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=356394.000000 s hg38.chr17_GL383564v2_alt 72494 72 + 133151 aagcctcttcaataggtgctcagattctgtgttttaAGt--tttttt------------------------tttt-aatttttttattttg----------------------------------------------------------------agat-ggag s panTro5.chr17 16259093 73 + 83181570 aagcctcttcaataggtgctcagattctgtgttttaAGt--tttttt------------------------ttttaaatttttttattttg----------------------------------------------------------------agat-ggag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166557 69 + 83442489 aagcctcttcaataggtgctcagattctgtg-tttAAGt--tttttt------------------------ta---aatttttttattttg----------------------------------------------------------------agat-ggag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001608 70 + 4267968 aagcctcttcaataggtgctcagattctgtgttttaAGt--tttttt------------------------tt---aatttttttattttg----------------------------------------------------------------agat-ggag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982557 71 - 2193130 aagcctcttcaataggtgctcagattctgtgttttaAGC--tttttt------------------------ttt--tgtttgtttgttttg----------------------------------------------------------------agat-ggag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054077 74 - 77216781 aagcctcttcaataggtgctcagattctgtgttttaAGGtttttttt------------------------tttt-ttttttttttttttg----------------------------------------------------------------agat-ggag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966687 74 - 80997621 aagcctcttcaataggtgctcagattctgtgttttaAGGtttttttt------------------------tttt-ttttttttttttttg----------------------------------------------------------------agat-ggag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2022919 66 + 10377808 aagcctctttaataggtgctcagattctgtgttttaAGG--------------------------------tttt-ttttttttttttttg----------------------------------------------------------------agat-ggag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910043 72 - 8458610 aagcctcttcaataggtgctcagattctgtgttttaAGG--TGtttt------------------------tttt-ttttttttttttttg----------------------------------------------------------------agat-ggag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64865795 72 + 75148670 aagcctcttcaataggtgctcagattctgtattttaAGt--tttttt------------------------tttt-ttttttttttttttg----------------------------------------------------------------agat-ggag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095344 62 + 4244037 aagcctcttcaataggtgctcagattctgtgttttaAG------------------------------------G-ttttttttttttttg----------------------------------------------------------------agat-ggag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117435 130 + 4569836 aagcctcttcaatatgtgctcagattctgtgttttaAGt--------------------------------tttt-ttttttttttttttGAGATGGAATCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagat-ggaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081935 63 - 159171411 aagtctcctcaataggtgctcagattctgtgttttaA-----------------------------------Gtt-ttttttttttttttg----------------------------------------------------------------aaat-ggag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1800868 58 + 3513951 aagtctcctcaataggtgctcagattctgtgttttaA-----------------------------------G-------ttttttttttg----------------------------------------------------------------aaatgggag i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964473 74 - 7032639 aagtctcctcaataggtgctcagattctgtgtttttgtttttgtttt------------------------tgtt-tttgttttttttttt----------------------------------------------------------------aaat-ggag i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22055154 2 - 122082543 ------------------------------------------------------------------------------------------------------------------------------------------------------------------AA i mm10.chr11 C 0 C 0 s canFam3.chr9 21396079 97 + 61074082 -AGTTTCCTCACTGTATGCATGAGTGCTGCATTTTAAACTTCTTTTTAAGGAGTGAAAGAAATCACCATTCTTTC-TCTTTTTTCAACTTA----------------------------------------------------------------ACAT-GTAG i canFam3.chr9 C 0 I 178 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e dasNov3.JH570468 376788 797 - 852752 I e otoGar3.GL873537 22785742 67 + 28711273 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=1939077.000000 s hg38.chr17_GL383564v2_alt 72566 230 + 133151 tctccctctctcatccaggctggagtgcagtgatgcaatcttggctcactgcaacctccgcctcccggattcaagtgattttcctgcctcagccttcctcgtagctgggattacaggcatgcgccagcaggcccagctaatttttatatttttagtggagaccgggttttaccatgttggtcaggctggtcttgaactcctgacctcaagtgatccacccgcctcagcct s panTro5.chr17 16259166 230 + 83181570 tctccctctctcatccaggctggagtgctgtgatgcaatcttggctcactgcaacctccgcctcccggattcaagtgattttcctgcctcagccttcctcgtagctggaattataggcatgcgccagcaggcccagctaatttttatatttttagtggagacggggttttaccatgttggtcaggctggtcttgaactcctgacctcaagcgatccacccgcctcagcct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166626 230 + 83442489 tctccctctctcatccaggctggagtgctgtgatgcaatcttggctcactgcaacctccgcctcccggattcaagtgattttcctgcctcagccttcctcgtagctggaattataggcatgcgccagcaggcccagctaatttttatatttttagtggagacggggttttaccatgttggtcaggctggtcttgaactcctgacctcaagcgatccacccgcctcagcct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001678 230 + 4267968 tctccctctctcatccaggctggagtgcagtgatgcaatcttggctcactgcaacctccgcctcccggattcaagtgattttcctgcctcagccttcctcgtagctgggattacaggcatgcgccagcaggcccagctaatttttatatttttagtggagaccgggttttaccatgttggtcaggctggtcttgaactcctgacctcaagtgatccacctgcctcagcct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982628 230 - 2193130 tctccctctctcatccaggctggagtgcagtgatgcgatcttggctcactgcaacttccatctcccgggttcaagtgattttcctgcctcagccttccttgtagctgggattacaggcatgtgccaccacgcccagctagtttttgtatttttagtggacacagggttttaccatgttggccaggctggtcttgaactcctgacctcaagtgatccacccgcctcagcct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054151 230 - 77216781 tcttcctttctcatccaggctggagtgcagtgatgcgatcttggctcactgcaacctccgcatcccgggttcaagtgattctcctgcctcagccttcctagtagctgggattacaggcatgtgccaccaggcccagccaatttttgtatttttagtggagacggggttttaccatgttagccaggctggtcttgaactcctgacctcaagtgatccacccacctcagcat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966761 230 - 80997621 tcttcctctctcatccaggctggagtgcagtgatgcgatcttggctcactgcaacctccgcatcccgggttcaagcgattctcctgcctcagccttcctagtagctgggattacaggcatgtgccaccaggcccagccaatttttgtatttttagtggagacggggttttaccatgttagccaggctggtcttgaactcctgacctcaagtgatccacccacctcagcat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2022985 230 + 10377808 tcttcctctcttatccaggctggagtgcagtgatgcgatcttggctcactgcaacctccgcatcccaggttcaagcgattctcctccctcagccttcctagtagctgggattacaggcatgtgccaccaggcccagccaatttttgtatttttagtggagacggggttttaccatgttagccaggctggtcttgaactcctgacctcaagtgatccacccacctcagcat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910115 230 - 8458610 tcttcctctctcatccaggctggagtgcagtgatgcgatcttggctcactgcaacctccgcatcccgggttcaagcgattctcctgcctcagccttcctagtagctgggattacaggcatgtgccaccaggcccagccaatttttgtatttttagtggagacggggttttaccatgttagccaggctggtcttgaactcctgatctcaagtgatccacccacctcagcat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64865867 230 + 75148670 tctccctctctcatctaggttggagtgcagtgatgcgatcttggctcactgcaacctccgcatcccaggttcaagcgattctcctgcctcagcattcctagtagctgggattacaggcatgtgccaccaggcctagccaatttttgtatttttagtggagatggggttttaccatgttagccaggctggtcttgaactcctgacctcaagtgatccacccacctcagcct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095406 230 + 4244037 tcttcctctctcatccaggctggagtgcagtgatgcgatcttggctcactgcaacctccgcatcccgggttcaagcgattctcctgcctcagccttcctagtagctgggattacaggcatgtgccaccaggcccagccaatttttgtatttttagtggagacggggttttaccatgttagccaggctggtcttgaactcctgacctcaagtgatccacccacctcagcat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117565 230 + 4569836 tctccctctctcatccaggctggagtgcagtgatgcaatcttggctcactgcaacctccgcgtcccgggttcaagcgattctcctgcctcagccttcctagtagctgggattacaggcatgtgtcaccaggcctagccaatttttgtatttttagtggagacggggttttaccatgttagccaggctggtcttgaactcctgacctcaagtgatccacccacctcagcct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46081998 230 - 159171411 tctccctctgtcagccaggctggagtgcagtgatgcaatctcggctcattgcaacctctgccccatgggttcaagcgattcttctgtctcagcctccccagtagctgggattacaggcaggtgccaccacgccctgctaatttttgtatttttagtagagatggagtttcaccatgttggccaggctggtcctgaactcctgacctcaggtgacccacctgccttagcct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1800926 230 + 3513951 tctccctctgtcacccaggctggagtgcagtgatgcgatctcggctcattgcaacctctgcctcctgggttcaagcgattcttctgtctcagcctccctagtagctgggattacaggcatgtgccaccatgcccagctaatttttgtatttttagtagagttggagtttcaccatattggccaggctggtcctgaactcctgaccttaagtgacccacctgcctcggcct i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964547 230 - 7032639 tctccctctgtcaccccggctggaatgcagtgatgcaatctcagctcattgcaacctctgcctcctgggttcaagcgattcttccgtataagcctccctagtagctgggattacaggcacgtgccaccacacccagctaatttttgtatttttagtagagatggaatttcaccatgttggccaggctggtcctgaactcctgaccttaagtgacccacctgcctcggcct i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22055156 63 - 122082543 GCTTCC----------------AAGTGCTAT--------------TTATTGTGACTT---------GGGTTAGAGTTA------------------------------GATTAAAAGC-------------------------------------------CAGGGTCTCGTCAT------------------------------------------------------- i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e dasNov3.JH570468 376788 797 - 852752 I e canFam3.chr9 21396176 178 + 61074082 I e otoGar3.GL873537 22785742 67 + 28711273 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=70290.000000 s hg38.chr17_GL383564v2_alt 72796 8 + 133151 cccaaact s panTro5.chr17 16259396 8 + 83181570 cccaaact i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166856 8 + 83442489 cccaaact i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001908 8 + 4267968 cccaaact i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982858 8 - 2193130 cccaaagt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054381 8 - 77216781 cccaaagt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966991 8 - 80997621 cccaaagt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023215 8 + 10377808 cccaaagt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910345 8 - 8458610 cccaaagt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866097 8 + 75148670 cccaaagt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095636 8 + 4244037 cccaaagt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117795 8 + 4569836 cccaaagt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082228 8 - 159171411 tccaaaat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1801156 8 + 3513951 cccaaagt i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964777 8 - 7032639 cccaaagt i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21396354 8 + 61074082 tccaggtt i canFam3.chr9 I 178 C 0 e mm10.chr11 22055219 0 - 122082543 C e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e dasNov3.JH570468 376788 797 - 852752 I e otoGar3.GL873537 22785742 67 + 28711273 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=214679.000000 s hg38.chr17_GL383564v2_alt 72804 22 + 133151 gctgggattacaggcgtgagcc s panTro5.chr17 16259404 22 + 83181570 gctgggattacaggcatgagcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166864 22 + 83442489 gctgggattacaggcatgagcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001916 22 + 4267968 gctgggattacaggcgtgagcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982866 22 - 2193130 gctgggattacaggcatgagcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054389 22 - 77216781 gctgggattacaggcatgagcc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27966999 22 - 80997621 gctgggattacaggcatgagcc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023223 22 + 10377808 gctgggattacaggcatgagcc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910353 22 - 8458610 gctgggattacaggcatgagcc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866105 22 + 75148670 gctgggattacaggcatgagcc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095644 22 + 4244037 gctgggattacaggcatgagcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117803 22 + 4569836 gctgggattacaggcatgagcc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082236 22 - 159171411 gctgggattacaggtgtgagcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1801164 22 + 3513951 gctgggattacaggtgtgagcc i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964785 22 - 7032639 gctgggattacaggtgtgagcc i aotNan1.NW_018502359v1 C 0 I 27 s otoGar3.GL873537 22785809 9 + 28711273 GCCAGGATT------------- i otoGar3.GL873537 I 67 C 0 s mm10.chr11 22055219 12 - 122082543 --TGAGAGCAGAGG-------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21396362 21 + 61074082 tccgggatcaca-acctgagcc i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e dasNov3.JH570468 376788 797 - 852752 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=45252.000000 s hg38.chr17_GL383564v2_alt 72826 8 + 133151 actgtgcg s panTro5.chr17 16259426 8 + 83181570 actgcgcg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166886 8 + 83442489 actgcgcg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001938 8 + 4267968 actgcgcg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982888 8 - 2193130 actgcgcg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054411 8 - 77216781 actgtgcg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967021 8 - 80997621 actgtgcg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023245 8 + 10377808 actgtgcg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910375 8 - 8458610 actgtgcg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866127 8 + 75148670 actgtgcg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095666 8 + 4244037 actgtgcg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117825 8 + 4569836 gctgtgcg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082258 7 - 159171411 -CTGTGTT i calJac3.chr5 C 0 I 20 s saiBol1.JH378271 1801186 7 + 3513951 -CTGTGTT i saiBol1.JH378271 C 0 I 2 s canFam3.chr9 21396383 1 + 61074082 a------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22055231 0 - 122082543 C e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e dasNov3.JH570468 376788 797 - 852752 I e otoGar3.GL873537 22785818 0 + 28711273 C e aotNan1.NW_018502359v1 6964807 27 - 7032639 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=107722.000000 s hg38.chr17_GL383564v2_alt 72834 11 + 133151 cagccCTGTGC s panTro5.chr17 16259434 11 + 83181570 cagccCTGTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166894 11 + 83442489 cagccCTGTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001946 11 + 4267968 cagccCTGTGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982896 11 - 2193130 cagccCCGTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054419 11 - 77216781 cagccCTGTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967029 11 - 80997621 cagccCTGTGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023253 11 + 10377808 cagccCTGTGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910383 11 - 8458610 cagccCTGTGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866135 11 + 75148670 cagccCTGTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095674 11 + 4244037 cagccCTGTGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117833 11 + 4569836 cagccCTGTGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082285 11 - 159171411 CAGCCCTGTGT i calJac3.chr5 I 20 C 0 s saiBol1.JH378271 1801195 8 + 3513951 ---CCCTGTGT i saiBol1.JH378271 I 2 C 0 s aotNan1.NW_018502359v1 6964834 11 - 7032639 CAGCCTTGTGT i aotNan1.NW_018502359v1 I 27 C 0 s otoGar3.GL873537 22785818 6 + 28711273 -----CTGTGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22055231 10 - 122082543 -GGGTCTATGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21396384 11 + 61074082 aaggcagatgc i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e dasNov3.JH570468 376788 797 - 852752 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=1656817.000000 s hg38.chr17_GL383564v2_alt 72845 163 + 133151 TTTAAGTTTG----ATTGTAAG---------ACACCATCCATTCTTACTCCTTTTCAACCCAACGTCTGGAGTAAGTTTGAAAGTGATTTTCACATTGGTCTCTTTGTATACGTTAGTCACTGTCAACCCCCC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT s panTro5.chr17 16259445 163 + 83181570 TTTAAGTTTG----ATTGTAAG---------ACACCATCCATTCTTACTCCTTTTCAACCCAACGTCTGGAGTAAGTTTAAAAGTGATTTTCACATTGGTCTCTTTGTATACATTAGTCACTGTCAACCCCCC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16166905 163 + 83442489 TTTAAGTTTG----ATTGTAAG---------ACACCATCCATTCTTACTCCTTTTCAACCCAATGTCTGGAGTAAGTTTAAAAGTGATTTTCACATTGGTCTCTTTGTATACATTAGTCACTGTCAACCCCCC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4001957 163 + 4267968 TTTAAGTTTG----ATTGTAAG---------ACACCATCCATTCTTACTCCTTTTCAACCCAACGTCTGGAGTAAGTTTAAAAGTGATTTTCACATTGGTCTCTTTGTATACATTAGTCACTGTCAACCCCCC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1982907 163 - 2193130 TTTAAGTTTG----ATTGTAAG---------ACACCATCCATTCTTACTCCTTTTCAACCCAACGTCTGGAATAAGTTTAAAAGTGATTTTCATGTTGGTCTCTTTGTATACATTAGTCACTGTCAACCCCCT-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054430 163 - 77216781 TTTAAGTTTG----ATTGTAAG---------ACAACATCCGTTCTTCCTCCTTTTCAACCCAATGTCTGGACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACGTTAGTCACTGTCAACCCACC-AAAAAGAAGTTATTAAACCAC----AAAAACAGAAGGCAAAATCCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967040 163 - 80997621 TTTAAGTTTG----ATTGTAAG---------ACAACATCCGTTCTTCCTCCTTTTCAACCCAATGTCTGGACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACGTTAGTCACTGTCAACCCACC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023264 163 + 10377808 TTTAAGTTTG----ATTGTAAG---------ACAACATCCATTCTTCCTTCTTTTCAACCCAATGTCTGGACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACGTTAGTCACTGTCAACCCACC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910394 163 - 8458610 TTTAAGTTTG----ATTGTAAG---------ACAACATCCGTTCTTACTCCTTTTCAACCCAATGTCTGTACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACATTAGTCACTGTCAACCTACC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866146 163 + 75148670 TTTAAGTTTG----ATTGTAAG---------ACAACATCCGTTCTTACTCCTTTTCAACCCAATATCTGGACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACGTTAGTCACTGTCAATCCACC-AAAAAGAAGTTCTTAAACCAC----AAAAACAGGAGGCAGAATCCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095685 163 + 4244037 TTTAAGTTTG----ATTGTAAG---------ACAACATCCGTTCTTACTCCTTTTCAACCCAATGTCTGGACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACATTAGTCACTGTCAACCTACC-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2117844 163 + 4569836 TTTAAGTTTG----ATTGTAAG---------ACAACATCCGTTCTTATTCCTTTTCAACCCAATGTCTGGACTAAGTTTAAAAGTGATTTTCACATTGATCTCTTTGTATACGTTAGTCACTGTCAACCCACT-AAAAAGAAGTTATTAAACCAC----AAAAACAGGAGGCAAAATCCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082296 144 - 159171411 TTTCAGTTTG----ATTGTAAG---------ACGCCATCCATTCTTACTCCTTTTCAACTCC-------------------AGGAGATTTTCACATTGTTCTCTTTGTATACATTAGTCACTGTCAACCCACC-AAAAAGAAGTTCTTAAACTAC----AAAAATGGGAGGCAAAACCCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1801203 139 + 3513951 TTTCAGTTTG----ATTGTAAG---------ACGCCATCCATTCTTACTCCTTTTCGACTCC----------------------AGATTTTCACATT-TTCTCTTTGTATATGTTAGTCACTGTCAA-CCGCC-AAAAAGAAGTTATTAAACCAC----AAAAATGGAAGGCAAAATCCAT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964845 144 - 7032639 TTTCAGTTTA----ATTGTAAT---------ACGCCATCCATTCTTACTCCTTTTCAACTCC-------------------AGGAGATTTTCACATTGTTCTCCTTGTATACGTTAGTCACTGTCAACCCACC-AAAAAGAATTTATTAAACCAC----AAAAATGGGAGGCAAAATCCAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22785824 161 + 28711273 TTGAAGTTTG----GTGGTAAA---------AAACCACCTAGTCTTTCTCCTTTTCAACTTAATGTATGGACCAAGTTTAAAAGTAAATTTCATACTGGTTTCTTAGTCTACATCAGCTACTATCAGCCCA-T-GAAAACAAGTGATTAAAACAC----AAAAGTATCAGGCAACA-CTGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22055241 165 - 122082543 TTTAAGCTTGAAGAAGTATAAG----------CGACTTCCATTCTTTACACTTTTGAACTCAACACT----ATAACTTTAAAAGTAAGTTTCATATTGGCCTTATTGTATAGACTAGTCATTATGAATGCATC-CCAAAGGAGT-ATTAAGCCATAAAGAAAAACAGGAGGCAAAGGTCCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21396395 113 + 61074082 tcaacctctg----a------------------ggcacccaggcat------------cccAACACCTG------------------------------TTTCTTAATATAGGTTTGTCACTATAAGCCCATCGGAAAAAAAGTTATTAAATCAC----AAAAATAGGAGGCAAAATCGAT i canFam3.chr9 C 0 I 258 s dasNov3.JH570468 377585 172 - 852752 TTTTAGTTTC----ATTTTAAGGAGCACAAGAAACCACCCATTCTTTTTCTTTTTCAACTTCATCTCTGGATCAAGTGTAAATGTAAATTTCATACTGGTCTGTTAGTTTGGGTTAGTCACTTTGAACCCATC-AGAAAAAAGTTATTAAACCAC----AAAAATAGGAGACTAAATCTAT i dasNov3.JH570468 I 797 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=424202.000000 s hg38.chr17_GL383564v2_alt 73008 44 + 133151 TGCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT s panTro5.chr17 16259608 44 + 83181570 TGCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16167068 44 + 83442489 TGCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4002120 44 + 4267968 TGCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1983070 43 - 2193130 TGCCTTTCAGAGAATCAATCAA---TAC-TTAAGGTATGACTATTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054593 44 - 77216781 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967203 44 - 80997621 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023427 44 + 10377808 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910557 44 - 8458610 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTGTGACCATTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866309 44 + 75148670 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095848 44 + 4244037 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTGTGACCGTTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2118007 44 + 4569836 TTCCTTTCAGAGAATCAATCAA---TACTTTTAGGTATGACCATTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082440 40 - 159171411 TGATTTTCAGAGAATCAATCAA---TACTTTTAGGT----CTATTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1801342 40 + 3513951 TGCCTTTCAGAGAATCAATCAA---TACTTTCAGGT----CTATTAT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6964989 40 - 7032639 TGCCTTTCAGAGAATCAATCAA---TACTTTTAGGT----CTATTAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22785985 44 + 28711273 TTACTTTCAGAGAAGCAATGAATAGTATTTTTAGGTATGAC---TAT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22055406 37 - 122082543 TT-TTTTCAGTGAATTAATCAG---TATTTTCAGGTATG------AT i mm10.chr11 C 0 C 0 s dasNov3.JH570468 377757 38 - 852752 -TTCTTTCAGAGAATTAA-------TTTTTCTCAGTATGACCATTA- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e canFam3.chr9 21396508 258 + 61074082 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=4865058.000000 s hg38.chr17_GL383564v2_alt 73052 468 + 133151 TACaatcatgagaatcctttgcattttcctgggatcttacattttacaacataattttacatat--------a-----------tcatcttcagtccaaccctataaggtgttagttttgtcttcattttacagttaaggaaatcaagcctcagagagataaaggtatctatctacagtcatttaatgagaatactggctctaact----ctgaattcagtg-tttcttccacaa-cactagattgcttcTTGGCAAGGCTGGAAAGGATGACAGGACAACCTGG--AGCAGGCTTATGAAGGGCACTGATTCACTTGAGATGGCAAAAGCAGCAG-----GGCTTAGTTGATAGTAACTTGTAAACGAGAGTCTTAGAACAAACTTAGTTTGTGTTAGACT-AAACTATCCACAGGCATTCC---ACCAATACCTTTTCTGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AA------TTTT s panTro5.chr17 16259652 465 + 83181570 TACaatcatgagaatcctttgcattttcctgggatcttacattttacaatataattttacatat--------a-----------tcgtcttcagtccaaccctatgaggtgttagttttgtcttcattttacagttgaggaaatcaagcctcagagagataaaggtatctatctacagtcatttaatgagaagactggctctaact----ctgaattcagtg-tttcttccacaa-cactagattgcttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCCGG--AGCAGGCTTACGAAGGGCACTGATTCACTTGAGATGGCAAAAGCAGCAG-----GGCTTAGTTGATAGCAACTTGTAAACGAGAGTCTTAGAACAAACTTAGTTCGTGTTAGACT-AAACTATCCACAGGCATTCC---ACCAATACATTTTCTGTGTGTCTCAGTGAC-----AAAATAGGC---CTCACTAAGTACAGGGGTA------TT-TTCTCCCTT-------------AA------TTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16167112 465 + 83442489 TACaatcatgagaatcctttgcattttcctgggatcttacattttacaatataattttacatat--------a-----------tcgtcttcagtccaaccctatgaggtgttagttttgtcttcattttacagttgaggaaatcaagcctcagagagataaaggtatctatctacagtcatttaatgagaagactggctctaact----ctgaattcagtg-tttcttccacaa-cactagattgcttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCCGG--AGCAGGCTTACGAAGGGCACTGATTCACTTGAGATGGCAAAAGCAGCAG-----GGCTTAGTTGATAGCAACTTGTAAACGAGAGTCTTAGAACAAACTTAGTTCGTGTTAGACT-AAACTATCCACAGGCATTCC---ACCAATACCTTTTCTGTGTGTCTCAGTGAC-----AAAATAGGC---CTCACTAAGTACAGGGGTA------TT-TTCTCCCTT-------------AA------TTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4002164 468 + 4267968 TACaatcatgagaatcctttgcattttcctgggatcttacattttacaacataattttacatat--------a-----------tcatcttcggtccaaccctataaggtgttagttttgtcttcattttacagttaaggaaatcaagcctcagagagataaaggtatctatctacagtcatttaatgagaatactggctctaact----ctgaattcagtg-tttcttccacaa-cactagattgcttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCTGG--AGCAGGCTTACGAAGGGCACTGATTCACTTGAGATGGCAAAAGCAGCAG-----GGCTTAGTTGATAGTAACTTGTAAACGAGAGTCTTAGAACAAACTTAGTTTGTGTTAGACT-AAACTATCCACAGGCATTCC---ACCAATACCTTTTCTGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTC-------------AA------TTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1983113 468 - 2193130 TACAGTCatgagaatcctttgcattttcccgggatcttacattttacaatataattttacatgt--------a-----------tcatcttcagtccaaccctatgaggtattagttttgtcttcattttacagttgaggaaatcaagcctcagagagatcaaggtatctatctacagtcatttaatgacaagactggctctgact----ctgaattcagcg-ttttttccacaa-cactagattgcttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCTGG--AGCAGGCTTGTGAAGGGCACTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGATAGCAACTTGTAAACGAGCGTCTTAGAACAAACTTAGTTTGTGTTAGACT-AAACTATCCACAGGCATTCC---ACCAATACCTTTTCTGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTATAGGAGTA------TT-TTCCCCCTA-------------AA------TTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30054637 469 - 77216781 TACaatcatgagaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaggtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagattaaagtatctatctacagtcattcaatgacaagactggctctaactgactctgaattcagtg-tttcttccacaa-cactaaattgtttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCTGG--AGCAGGCTTACGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGACAGCAACTTGTAAACAAGATTTTTAGAACAAATGCAGTTCATGTTAGACT-AAACTATCCACAGGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGG-CTT----CTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AATA----TTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967247 472 - 80997621 TACaatcatgagaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaggtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagatt-aagtatctatctacagtcattcaatgacaagactggctttaactgactctgaattcagtg-tttcttccacaa-cactaaattgtttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCTGG--AGCAGGCTTACGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGACAGCAACTTGTAAACAAGATTTTTAGAACAAATGCAGTTCATGTTAGACT-AAACTATCCACAGGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGG-CTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AATA----TTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023471 474 + 10377808 TACaatcatgagaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaggtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagattaaagtatctatctacagtcattcaatgacaagactggctctaactgactctgaattcagtg-tttcttccacaa-cactaaattgtttcTTGGCAAGGCTGGAAAGGATGGCAGGACAACCTGG--AGCAGGCTTACGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGACAGCAACTTGTAAACAAGATTTTTAGAACAAATGCAGTTCATGTTAGACT-AAACTATCCACAGGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AATA----TTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1910601 474 - 8458610 TACaatcatgaaaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaggtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagattaaagtatctatctacagtcattcaatgacaagactggctctaactgactctgaattcagtgttttcttccacaa-cactaaattgcttcTTGGCAAGGCTGGAAAGGATGGCAGGAC-GCCTGG--AGTAGGCTTATGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGACAGCAACTTGTAAATGAGATTTTTAGAACAAACGTAGTTCATGTTAGACT-AAACTATCCACAGGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AATA----TTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866353 471 + 75148670 TACaatcatgagaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaggtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagattaaagtatctatctacagtcattcaatgacaagactggctctaaatga--ctgaattcagtg-tttcttccacaa-cactaaattgcttcTTGGCAAGGCTGGAAAGGATGGCAAGACAACCTGG--AGCAGGCTTACGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGACAGCAACTTGTAAACGAGATTTTTAGAACAAACGTAGTTCATGTTAGACT-AAACTCTCCACATGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTACAGGAGTA------TT-TTCTTCCTT-------------AAC-----TTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2095892 474 + 4244037 TACaatcatgaaaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaggtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagattaaagtatctatctacagtcattcaatgacaagactggctctaactgactctgaattcagtgttttcttccacaa-cactaaattgcttcTTGGCAAGGCTGGAAAGGATGGCAGGAC-GTCTGG--AGTAGGCTTACGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAG-----GGCTTAGTTGACAGCAACTTGTAAACGAGATTTTTAGAACAAACGTAGTTCATGTTAGACT-AAACTATCCACAGGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGGCCTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AATA----TTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2118051 473 + 4569836 TACaatcatgagaatcctttgcattttcctggaatcttacagtttacaatataattttacctat--------a-----------tcatcttcagtccaaccctgtgaagtgttagttttgtcttcattttacagttgaggaaatcaaggctcagagagattaaagtatctatctacagtcattcaatgacaagactggctctaactgactctgaattcagtg-tttcttccacaa-cactaaattgcttcTTGGAGAGGCTGGAAAGGATGGCAGGACAACCTGG--AGCAGGCTTACGAAGGGCGCTGATTCACTTGAGATGGCAAAAACAGCAA-----GGCTTAGTTGATAGCAACTTGTAAATGAGATTTTTAGAACAAACGTAGTTCATGTTAGACT-AAACTATCCACAGGCATCCC---ACCAATACCTTTTATGTGTGTCTCAGTGAC-----AAAATAGATCTTCTCACTCAGTACAGGAGTA------TT-TTCTCCCTT-------------AAT-----TTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082480 472 - 159171411 TACaatcatgagaattcttggcattttcctggaaccttacagcttacaatataattttacctac--------a-----------ccagcttcagtccaaccctatgagatgttagttttgtcttcattttacagatgaggaaatcaaggctcagagagattagggtatctgtctacagccattcaatggcaagactggctctaactgactctgaattaggtg-tttcttcaacag-cactagattgcctcTTGGCATGGCTGGAAAGGATGGCAGGACAGCCTGG--AGCAGGCTTACAAAGGGCACCGATTTCCTTGAGATGGCAAAAACAGCGG-----GGCTTAGCTGATAGCAACTTGTAAATGAAATTCTTAGAACAAACGTAGTTCATGTTAGACT-AACCTATACACAGGCATCCC---ACCAATACCTCTTCTGTGCATCTTAGTGAC-----AAAAAAGGCCTTCTCACTCAGCACAGGGGAA------TT-TTCTCCCTT-------------AA------ATTT i calJac3.chr5 C 0 I 2 s saiBol1.JH378271 1801382 477 + 3513951 TACaatcatgagaattcttggcattttcctggaagcttacagcttacaatataattttacctat--------a-----------ccaccttcagtctaaccctatgagatgttagttttgtcttcattttacagataaggaaatcaaggctcagagagattagggtatctgtccacagccatttaatggcaagactgattctaactgactctgaattcagtg-tttcttcaacag-cactagattgcctcTTGGCATGGCTGGAAAGGATGGGAGGACAGCATGG--AGCAGACTTATGAAGGGCACCGATTCACTTGAGATAGCAAAAACAGCGGGGCTTGGCTTAGCTGATAGCAAGTTGTGGATGAGATTCTTAGAACAAACGTAGTTCGTATTAGACT-AACCTATACACAGGCATCCC---ACCAATACCTTTTCTGTGCGTCTTAGTGAC-----AAAATAGGCCTTCTCACTCAGCATGGAGGTA------TT-TTCTCCCGT-------------AA------ATTT i saiBol1.JH378271 C 0 M 1284 s aotNan1.NW_018502359v1 6965029 468 - 7032639 TACaatcatgagaattcttggcattttcctggaaccttacagcttacaatgtaattttacctat--------a-----------ccatcttcagtccaaccctatgagatgttagttttgtcttcattttacagatgaggaaatcaaggctcagagagattagggtatctgtctacagccatttaatggcaagactggct----ctgactctgaattcagtg-tttcttcaacag-cactagattgcctcTTGGCATGGCTGGAAAGGATGGCAGGACAGCCTGA--AGCAGGCCTACGAAGGGCACCGATTCACTTGAGATGGCAAAAACAGCGG-----GGCTTAGCTGATAGCAACTTGTAAATGAGATTCTTAGAACAAATGTAGTGCGTGTTAGACT-AACCTATACACAGGCATTCC---ACCAATACCTTTTCTGTGCGTCTTAGTGAC-----AAAATAGTCCTTCTCACTCAGCACAGGGGTA------TT-TTCTCCCTT-------------AA------AATT i aotNan1.NW_018502359v1 C 0 I 2 s otoGar3.GL873537 22786029 452 + 28711273 TAAAGTCCtgataatgctttgcatttttatgagacttgaccatttacagtataagtttacctatttcatttct-----------tcatcttcagcctaaccctgtgaagtgttag-cttgtcttcattttacagatgaggagacggaggctcagagagattaaggaatctgcccacaggcagttagtggcaaggccggatctaaacGACACTGAC--------TTTTGCCCA----------------TCTCAGTGTGGTTGGA-----------GATAATCTGT--AGCAGGCTTACCAGGTGTGCCAAATAA----AGACAGCACACATGGCAA-----GGCTCGGTTGATAGCAGCATA-AGAAAGGAGTCTTAGAACAAAAGTAGTTAGTGTTGGATG-AAACTATACACAGGCATCTC---ACCAATACTTTTT-TGTGGGTCTTGGAGAA-----AAAGTAGGCCTTCTCATTTGGCAGAGTGGTATATAATTT-TTTGCTTTT-------------AAAACACCTTTT i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22055443 411 - 122082543 TGTGCTCATAATAATATTTTGATGTTTTGTAG--------AGTTTATAATAGGATTTCACTCAT--------ATTGC---TTCTTTATCTTCAGGGCAACAAAATGAAGTTTTACTTCTGTCTTCATTTTGCA---------AACATGGTTCTGGGAGAGTAAGGAATCCATCACCAGTCATTTAATGGCAAGGCTGGATCTGAGGGACTTTGAACTTCATG-ATTTT--CAGGG-TACT--------------------TGGATAAAGAAGAGAGATAGGTTGT--AGTAGAACTAGAAAGTGTAGCAATTCA----AGAGGA-----------------TGCTTCCTTGAGAGCAGCTTGTGAATG-GATTCCTAGAACAATCGTAGTGAATGGTGGATG-GAACCACACACAG---------------TACCTTCTCTGTGGCTCTCAG-AAG-----GAGATGGGCCACCCAACTTACTACAGTGATG------TTGTTCTTTTAC-------------AACA----C--- i mm10.chr11 C 0 C 0 s canFam3.chr9 21396766 488 + 61074082 TGCaatcataagaattctttgcatttttgtggaactttatagtttacaacacatttgtaattac--------tatgctatttcttcatcttcagatcagccctgtgaagtgttagtttggtttccattttata--------aatgaaggctcagagacatgaaggaatttatccatggtcat--aATTGCAATGTTGAAGCTAACTGATTTCTACTTCAGTG-CTTTTATTACAA-GACCAGGTTGCTT-TCAAGGTGGCTGGAAAGGATGGTGAGATAATCTATACAACAGGCTTATGAAGTTCACCATCTCACTTAAAA-GGCAAGC----CAG-----GGCTTAGTCCATAGCAGTCTGTGCA---AATTCTTAGAACAAATGCAGTCAATATCAGATTAAAACTGTACATAGACCCCCCCCTACCAAAACCTTCTCTGTGGATCTCAGGGATCTCAGGAAATAGATCTTCTTACTCAGCGTGGTGGTA------TT-TTTTTTCCCCTTCCAAAAAGGGAA------TTTT i canFam3.chr9 I 258 I 5 s dasNov3.JH570468 377795 478 - 852752 --Caatcatcggaatcatttgcattttcaaggggctttagagttaaccccataatttcat-tat--------g---tcatttcttcatcttcatgccaaccctatgatgtgttagtttggtccccattttaccagtgaggaaagcaaggctcagggaaatcaagggatttatctaCA-TCATGTAATGCCAAGGCCACGTCTAACTGACTTTTTG-TCATTG-CTTCTCCCACAACCATTAGAGTCCTCTTTGG--GGGCTGGG-AGGATAACAAGACAATCTGG--AATAGGCTTATGAAGTTCACGGACTTACTTAAAAAGGCAAAGGTGGTAG-----GGCTTAGTTGGTAGCAACTTGTGTATGGAAGTCTTAGAACAAATGCAGTTAATTTTGGCCTAAAATTGTACGTAGGAACTT----ATCAATACTTTCTCTGTGGGCTTCTGGGAG-----GGAATAATTCTTCTAATTCAGTAAAGAGGTA------CT-TTTTCCCTT---TCAAA-----AA------GTTT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=743815.000000 s hg38.chr17_GL383564v2_alt 73520 87 + 133151 TTAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGGCCGGGAAACAAAGAC----T----TTTTTTTTTTGGACC s panTro5.chr17 16260117 91 + 83181570 TAAAATTCGAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGGCCAGGAAATGAAGACTTTTT----TTTTTTTTTTGGACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16167577 89 + 83442489 TAAAATTTGAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGGCCAGGAAATGAAGAC--TTT----TTTTTTTTTGGTACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4002632 88 + 4267968 TTTAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAATGCCGGGGAAACAAAGC---TT----TTTTTTTTTTGGACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1983581 86 - 2193130 TTTAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGGCTGGGAAACAAAGAC---------TTTTTTTTTTGGACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055106 91 - 77216781 TAAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCCTAGGAAACAAAGACTTTTT----TTTTTTTTTTTGACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967719 91 - 80997621 TAAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCCTAGGAAACAAAGACTTTTT----TTTTTTTTTTTGACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2023945 91 + 10377808 TAAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCCTAGGAAACAAAGACTTTTT----TTTGTTTTTTTGACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911075 85 - 8458610 TAAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCCTGGGAAACAAAGACTTT----------TTTTTTTGACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866824 95 + 75148670 TTAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCCTGGGAAACAAAGACttttttttttttttttttttGACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2096366 86 + 4244037 TAAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCCTGGGAAACAAAGAC---------TTTTTTTTTTTGACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2118524 89 + 4569836 TAAAATTCAAAATATTTCAAAATATAATAAAATTGACT--AAGTCAGCCAAGTAAAGCTTGAGAAACAAAGACTTT------TTTTTTTTTTTGACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46082954 88 - 159171411 TAAAATTCAAAATATTTCGAAGTAGAATGAAATTGACT--AAGTCAGCCAAGTAAAGGCCAGGAAACAAAGTC---TT----TTTTTTTTTTTGACC i calJac3.chr5 I 2 C 0 s aotNan1.NW_018502359v1 6965499 91 - 7032639 TAAAATTCAAAATATTTCAAAGTAGAATGAAATTGACT--ATGTCAGCCAAGTAAAGGCCAGGAAACAAAGTCTTTTT----TTTTTTTTTTTGACC i aotNan1.NW_018502359v1 I 2 C 0 s otoGar3.GL873537 22786482 83 + 28711273 AAAAATTTAAAAC-CTTCAAAATATAATGAATTTGACTACAGGTCAGTCAAGCAAAGCCCAGGAAACAG-------------TCTTCTCCTTTCACC i otoGar3.GL873537 I 1 I 7 s mm10.chr11 22055854 71 - 122082543 TTAAAATGGACTGGCCTCAAAGTAGGATGAGTTTGACT--ATGTTCTCCA--------------AACAGAAAC---------ATTTCCTCTTTGAT- i mm10.chr11 C 0 C 0 s canFam3.chr9 21397259 81 + 61074082 AAAAGTTCAAAAACTTAAAAAATGTAATACATTTGACT--AGGCCAGCCTAGTAAAGCCCTGAAAAAG--------------TTTTCTTTTTTCACT i canFam3.chr9 I 5 C 0 s dasNov3.JH570468 378273 82 - 852752 TAAAATTTAAAATATTACAAAATGTAATGAATTTGACC--AGATCAGCCAAGTAACACCCAGGAAACAG-------------TCTTCCTCTCTGACC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35889808 795 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=2761027.000000 s hg38.chr17_GL383564v2_alt 73607 191 + 133151 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGCAGTCCCTGCGGCAGCTGGTGGAGTCCGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGATGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG s panTro5.chr17 16260208 191 + 83181570 TCTTTTGACCTCCGGCTGTGTGTGCAGGTACCAGACGGAGCAGTCCCTGCGGCAGCTGGTGGAGTCCGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGATGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16167666 191 + 83442489 TCTTTTGACCTCCGGCTGTGTGTGCAGGTACCAGACGGAGCAGTCCCTGCGGCAGCTGGTGGAGTCCGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGATGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4002720 191 + 4267968 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGCAGTCCCTGCGGCAGCTGGTGGAGTCCGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGATGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1983667 191 - 2193130 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGCAGTCCCTGCGGCAGCTGGTGGAGTCCGACATCAACAGCTTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055197 191 - 77216781 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGCTGTCCCTGAGGCAGCTGGTGGAGTCTGACATCAACAGTCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAACTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27967810 191 - 80997621 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGCTGTCCCTGAGGCAGCTGGTGGAGTCTGACATCAACAGTCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAACTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024036 191 + 10377808 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACAGAGCTGTCCCTGAGGCAGCTGGTGGAGTCTGACATCAACAGTCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAACTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911160 191 - 8458610 TCTTTTGACCTCTGGCTGTGTGTGTAGGCACCAGACGGAGCTGTCCCTGCGGCAGCTGGTGGAGTCTGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGTAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64866919 191 + 75148670 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGATGTCCCTGAGGCAGCTGGTGGAGTCTGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACTCTGTGTAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2096452 191 + 4244037 TCTTTTGACCTCTGGCTGTGTGTGTAGGTACCAGACGGAGCTGTCCCTGCGGCAGCTGGTGGAGTCTGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGTAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2118613 191 + 4569836 TCTTTTGACCTCTGGCTGTGTGTGCAGGTACCAGACGGAGCTGTCCCTGCGGCAGCTGGTGGAGTCTGACATCAACAGCCTGCGCAGGATTCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGTTGCTGTCCCTCAAGCAGAACCATGAGCAGGTAAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083042 191 - 159171411 TCTTTTGATCTCTGGCTGTGTGTACAGGTACCAGACTGAACTGTCCCTGCGGCAGCTGGTGGAGTCAGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTTTCCCTCAAGCAGAACCATGAGCAGGTGAGAG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6965590 191 - 7032639 TCTTTTGATCTCTGGCTGTGTGTGCAGGTACCAGACTGAGCTGTCCCTGCGGCAGCTGGTGGAGTCAGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTTTCCCTCAAGCAGAACCATGAGCAGGTGAGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35890603 191 - 65901067 TCTTTTGACCTCTGGCTGTGTGCGAAGGCATCAGACGGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGACGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTAAGAG i micMur3.chr16 I 795 I 615 s otoGar3.GL873537 22786572 191 + 28711273 TCTTTTGACCTCTGGCTGTGTGTGCAGGTATCAGACAGAGCTGTCCCTGAGGCAGCTGGTGGAATCTGACATCAACAGCCTTCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGATCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTGAGAA i otoGar3.GL873537 I 7 I 2 s mm10.chr11 22055925 189 - 122082543 GCCTCTGACTT--GACTATGTGCGCAGGTATGAGTCAGAGCTGTCCCTGCGGCAGCTGGTGGAGTCAGACCTCAATGGCCTGCGCAGGATCCTGGACGAACTGACCCTCTGCAAGTCTGATCTGGAGGCACAGGTGGAGTCCCTGAGGCAGGAGCTGCTGTGTCTCAAGCAAAACCATGAGGAGGTAAGAA i mm10.chr11 C 0 I 2 s canFam3.chr9 21397340 191 + 61074082 CCCTTTGATCTTTCTCTGTGTGTGCAGGTACCAGACAGAGTTGGGCTTGCGGCAGCTGGTAGAGTCGGACATTAACGGCCTGCGCAGGATCTTGGATGAGTTGACTCTGTGCAAGTCCGACCTGGAGGCCCAGGTTGAGTCCCTGAAGGAGGAGTTGCTGAGTCTCAAGCAGAACCATGAGCAGGTGAGGA i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 378355 191 - 852752 TCCTTTGGCCTTTGGCTATGTGTGCAGGATGGAGAGGGAGCTGTCCCTGCGGCAGCTGGTGGAGGCTGACCTCAACAGCCTGCGCAGGATCCTGGATGAGCTGACTCTGTGCAAGGCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTCCCTCAAGCAGAACCATGAGCAGGTGAGAG i dasNov3.JH570468 C 0 I 2 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=4183024.000000 s hg38.chr17_GL383564v2_alt 73798 452 + 133151 TCCCAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGATTTGATTTGCTAAGCACCCTAGGCCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACATACTTTGGGGCTTGTT-GGGGAATGAGT-GAC-AGCTTACCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTACTTCCCCTTGGGA-CCAGACATGTATGGCTGAAAGGTCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCCAGGTAGGTTAATGACCAAGACTGGAAGGAGATAGAAAACATTCTTACACTCTGTTTCACCTAGATAACTAGAACTCAAGC----------------TAGATAAatg-------gatagatggatga----atggatggatggatgaactgatggatggGAAAAACGGGAGAAATGAAATAACTCAAAT----A s panTro5.chr17 16260399 452 + 83181570 TCCCAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGATTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACATACTTTGGGGCTTGTT-GGGAAATGAGT-GAC-AGCTTACCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTATTTCCCCTTGGGA-CCAGACATGTATGGCTGAAAGGTCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCCAGGTAGGTTAACGACCAAGATTGGAAGGAGATAGAAAACATTCTTACACTCTGTTTCACCTAGGTAACTAGAACTCAAGC----------------TAGATAAatg-------gatggatggatga----atggatggatggatgaactgatggatggGAAAACCAGGAGAAATGAAATAACTCAAAT----A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16167857 452 + 83442489 TCCCAGTCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGATTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACATACTTTGGGGCTTGTT-GGGAAATGAGT-GAC-AGCTTACCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTATTTCCCCTTGGGA-CCAGACATGTATGGCTGAAAGGTCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCCAGGTAGGTTAACGACCAAGATTGGAAGGAGATAGAAAACATTCTTACACTCTGTTTCACCTAGGTAACTAGAACTCAAGC----------------TAGATAAatg-------gatggatggatga----atggatggatggatgaactgatggatggGAAAACCAGGAGAAATGAAATAACTCAAAT----A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4002911 457 + 4267968 TCCCAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGATTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACATACTTTGGGGCTTGTT-GGGGAATGAGTGGAC-AGCTTACCTTTCTTACATAAAGGAGTGTGGTAAGCTGACCTACTTCCCCTTGGGA-CCAGACATGTATGGCTGAAAGGTCACACAAATATCTTTAAACTACTGTCTACCGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCCAGGTAGGTTAATGACCGAGACTGGAAGGAGATAGAAAACATTCTTACACTCTGTTTCACCTAGATAACTAGAACTCAAGC----------------TGGATAAatg-------gatagatggatgaatggatggatggatggatgaactgatggatggGAAAAAAGGGAGAAATGAAATAACTCAAAT----A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1983858 456 - 2193130 TCCCAGCCTCCAGTATCCCAATACTGAGAGCTCTGTGATGCCCCTGAATAGGATAAGGTAGGACTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACGTACTTTGGGGCTTGTT-GGGGAATGAGT-GAC-AGCTTACCTTTTTTACACAAAGGAGTGTGGTAGGCTGACCTATTTCCCCTTGGGA-CCAGACATGTATGGCTGAAAGGTCACACAAATATCTTTAAATTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCCAGGTAGGTTAATGACTGAGACTGGAAGGAGATAGAAAACATTCTTACACTCTGTTTCACCTAGATAACTAGAACTCAAGC----------------TGGATAAatg-------gatggatggatgaatggatggatggatggatgaactgatggatggGAAAAACGGGAGAAATGAAATAACTCAAAT----A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055388 449 - 77216781 TCCTAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACGTACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTATTTCCCCTTGGGACCCAGACATGTAAGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAAGTGCC----GTGTTAAAGACCGAGACTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAACTAGAACTCAAGC----------------tggatgaatg-------gatggatggatga----atggatggatggatgAACTGAGCGATGGGAAAAACAGAAGAAATGAAATAACTCAAAT----A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968001 449 - 80997621 TCCTAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACGTACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTATTTCCCCTTGGGACCCAGACATGTATGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAAGTGCC----GTGTTAAAGACCGAGACTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAACTAGAACTCAAGC----------------tggatgaatg-------gatggatggatga----atggatggatggatgAACTGAGCAATGGGAAAAACAGAAGAAATGAAATAACTCAAAT----A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024227 465 + 10377808 TCCTAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACATACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTATTTCCCCTTGGGACCCAGACATGTATGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAAGTGCC----GTGTTAAAGACCGAGACTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAACTAGAACTCAAGCtggatgaatggatggatggatgaatg-------gatggatggatga----atggatggatggatgAACTGAGCGATGGGAAAAACAGAAGAAATGAAATAACTCAAAT----A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911351 449 - 8458610 TCCTAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTAGCTGGTTGCTCAAAAAGTACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCCTTTTTTACATAAAGGAGGGTGGTAAGCTGACCTATTTCCCCTTGGGACCCAGACATATATGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCC----GTGTTAAAGACCGAGACTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAACTAGAACTCAAGC----------------TAgatgaatg-------gatggatggatga----atggatggatggatgAACTGAGTGATGGGAAAAACGGAAGAAATGAAATAACTCAAAT----A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64867110 449 + 75148670 TCCTAGCCTCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAAAGTACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCTTTTTTTACATAAAGGAGGGTAGTAAGCTGACCTATTTCCCCTTGGGACCCAGACATGTATGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCT----GTGTTAAAGACCGAGACTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAACTAGAACTCAAGC----------------tggatgaatg-------gatggatggatga----atggatggatggatgAACTGAGCGACGGGAAAAACGGAAGAAATGAAATAATTCAAAT----A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2096643 449 + 4244037 TCCTAGCCCCCAATATCCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGAATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGACCT--A--ACAACA-TTTAGCTGGTTGCTCAAAAAGTACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCCTTTTTTACATAAAGGAGGGTGGTAAGCTGACCTATTTCCCCTTGGGACCCAGACATATATGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCC----GTGTTAAAGACCGAGACTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAACTAGAACTCAAGC----------------tggatgaatg-------gatggatggatga----atggatggatggatgAACTGAGTGATGGGAAAAACGGAAGAAATGAAATAACTCAAAT----A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2118804 449 + 4569836 TCCTAGCCCCCAATATTCCAATACTGAGAGCTCTGTGATCCCCCTGAATAGGATAAGGTAGGTCTTGATTTGCTAAGCATCCTAGACCT--A--ACAACA-TTTTGCTGGTTGCTCAAAACGTACTTTGGGACTTGTT-GGGGAATGAGT-GAC-AGCTTCCCTTTTTTACATAAAGGAGTGTGGTAAGCTGACCTATTGTCCTTTGGGACCCAGATATGTATGGCTGAAAGATCACACAAATATCTTTAAACTACTGTCTACTGTTTGATGCTATCTATTAGCTTCTGAAGAGGTGCC----ATGTTAAAGATCGAGGCTGGAAGGAGATAGAAAATATTCTTATACTCTGTTTCATCTAGATAAATAGAACTCAAGC----------------tggatgaacg-------gatggatggatga----atggatggatggatgaactgagcgatggGAAAAACGGAAGAAATGAAATAATTCAAAT----A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083233 445 - 159171411 TCCCAGCCCCCACTATCCCAACACTGAGAGCTCCGTGACCCGCCTGAGTAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGATCT--A--ATGACA-TTTTGCTGGTTGCTCAAAA-ATACTTTGGGGTTTGTT-GGGGAATGAAT-GGT--GCTTATCTCTTTTACATAAAGGAGTGTAGTAAGCTGACCTATTTCCCCTTGAGG-CCAAATATATGTGGCTGAAAGATCACACAAATGTC-TTAAACTACTGTCTACTGTTTGATGTGATCCATTAGCTTCTGAAGTTGTGCC----ATGTTAATGACCGAGACTGGAAGGAGATAGAAAACATTCTTACACCCTGTTTCACCTAGATAACTAGAACTCAGTC----------------tggatcaatg-------gatggatggctga----gtggatggatggatgaactgatggatggGGAAAAAGGGAGAAATGAAATAACTCAAAT----A i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6965781 435 - 7032639 TCCCAGCCCCGATTATCCCAACACTGAGAGCTCCGTGACCCACCTGAGTAGGATAAGGTAGGTCTTGATTTGCTAAGCACCCTAGAACT--A--ACAACA-TTTTGCTGGTTGCTCAAAACATACTTTGGGGTTTGTT-GGGGAATGAAT-GGT--GCTTACCTCTTTTACATAAAGGAGTGTAGTAAGCTGACCTATTTCCCCTTGAGG-CCAAATATGTGTGGCTGAAAGATCACACAAATATCTTTAAACTACCGTCTACTGTTTGATGCGATCCATTAGCTTCTGAAGAGGTGCC----ACGTTAATGACCGAGACTGGAAGGAGATGGAAGACATTCTTATACTCTGTTTCACCTAGATAACTAGAACTCAGTC----------------tggataaatg-------ga----------------tggatggatgaatgaactgatggatggGGAAAACGGGAGAAATGAAGTAACTCAATT----A i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22786765 431 + 28711273 TTCCA-TCCCCAACACCCCAGTGCTGAGGGCTCCACGA-CTCCCTGAGTAGGGAGGGTAAGCACCTGCTCTCC--AGCTCCCTATGGCTCAC--ACAACC-TTTTGCTGGTTACTCAAAACATACTTTGGGGCTTGCTGGGGGAATGAGT-TAC-AGCTCACCTCTTTTGCACAAGGGAATGTGGTCAACTGAGCTATTTCCAGGTGGGG-CTGGGTATGCATGGCTAAGAGGCCACATGAAGATCTTTAAAATATGTTTTGCTGCTTGATAAGATCTACTATCTTC-------------------------ACCAAGACTAGGAGAAGAGAGCAAACATCTGTGTACTCTGTTTCATCTAGATAACTAGAGCCCAAGC----------------TGGATAAATGTGAGTTAGGtgggtggactg----atggatggatggatgaatggatggacaga------tggaGAAATGAAAGAATTCAAATAATGA i otoGar3.GL873537 I 2 C 0 s mm10.chr11 22056116 327 - 122082543 TCCCACCCACCAACATTTCAGTACTCAGGCCCTCTCGA--CTCTTGAGCAGGGGAAGGGAAGCCTTGGTGGGT---------GAGATTA--A-CACAACATTTTTGTTAGTTGCTCAAAGGAAAGCTGAGAGATGATT-GAGCAATGAGG-CCCAAGCTGATCTCTTTTCCAGGAAGAAGTGTGG----------------CCCTAGGTG------------------------CACATGAAT--------------------------------TTTGTTATTTTCTGAGTAGTTGGG----AAATCAGTGCTGAAGTGCGAAAAGAGA------ATGCTGTTGTCCTTTGT---------------------AAGTC----------------TAGGCAA----------AATGGATGGTTGA----GGGTGTAGATAAATG--------GATGGGGAAAACATGGGAAAC----TAGTTCTAAT----A i mm10.chr11 I 2 I 45 s canFam3.chr9 21397533 412 + 61074082 TTCTAGCCCACATCATTTCAT--ATGGAAGTTCTATACCTCCCTTGAGCAGCATAAGGTTGGTC----TCTGCTAAGCACCCTAGAACT--AACACAACA-TTTTGCTGCTTGTTCAAAACACACTTGGGGGATTCTG-GGGGAATGGGT-CATAAGCTTACTTCTCTTACTTAAGAGAATATGGTCAACTGACTTATTTCCATTTGGGA-CCAGATAT--ATGGCCAAAAATCCATACAAAGATCTTTAAAATATTTCCTAATGCTTGACAAGATCTATTATCTTGTGTAG--GTGCC----ATATTAAGGACTAAGACTAGAAGGAGACAGCAAACTTCCTCATATTATATGTCACCTAGAT-ACTAGAACTCAG------------------tggatggatg-------gatggagggatgg----atg--------------------------AGAAAAATGAGAGATGAAGGAATTCAAAT----A i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 378548 416 - 852752 TCTCGGCCCTCTCTATTCTAATATTGAGAGCTCCGTGAATCGCCTGTGTAGGGAAAGGTAGATTTTGATTCACTGAGCACCCCAGAACT--A--ATAGTA-TTTTGCTGGTTGCTCAAAACATTCCT-GTGGATTGTT--GGCAATGAGT-CATAAACGTACCTCTTTGGTATAAGGGAGTGTGGTCAGCTGACGTATTTCCACTTGGAA-CCAG--ATGTGTGGCCAAAAGACCACACAAAGAACTTTAAAATACTTTGTACAGTTTAATGAGATCCATTATCCTCTGAAGTGGTGCT----------------AAACCTGAAAGGAGATAGCAAGCTTCCTTATACTGTATGTCACTTACATAACTAGAACCTAAGC----------------TGGACTgatg-------gatggatggatgg----atggatgggtgg-----------------GAAAATGAGAGAAATGAAGGAACTTAAAT----A i dasNov3.JH570468 I 2 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35890794 615 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=974501.000000 s hg38.chr17_GL383564v2_alt 74250 104 + 133151 ATGGTTGATTCAGATCTCATGGCTGAATGCAATACTACGAAATCAGATGCATGTCTCAAACATTAGACGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----AG s panTro5.chr17 16260851 104 + 83181570 ATGGTTGATTCAGATCTCATGGCTGAATGCAATACTACGAAATCAGATGCATTTCTCAAACATTAGACGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----AG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168309 104 + 83442489 ATGGTTGATTCAGATCTCATGGCTGAATGCAATACTACGAAATCAGATGCATTTCTCAAACATTAGACGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----AG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003368 104 + 4267968 ATGGTTGATTCAGATCTCATGGCTGAATGCAATACTACAAAATCAGATGCATGTCTCAAACATTAGACGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----AG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984314 104 - 2193130 ATGGTTGATTTAGATCTCATGGCTGAATGCAATACTATGAAATCAGATGCATGTCTCAACCATTAGACGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----CG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055837 103 - 77216781 ATGGTTGACTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACATTAGATGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----AG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968450 103 - 80997621 ATGGTTGACTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACATTAGATGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGC----AG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024692 103 + 10377808 ATGGTTGACTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACATTAGATGTTTTCATG---ATGAAAACATGT------GTCATACTCTAGT----AG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911800 103 - 8458610 ATGGTTGATTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACATTAGATGTTTTCATG---ATGAAAACATGT------GTCATACTCCAGT----AG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64867559 103 + 75148670 ATGGTTGATTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACATTAGATGTTTTGATG---ATGAAAACGTGT------GTTATACTGTAGT----AG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097092 103 + 4244037 ATGGTTGATTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACGTTAGATGTTTTCATG---ATGAAAACATGT------GTCATACTCCAGT----AG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119253 103 + 4569836 ATGGTTGATTCAGATCTCATGGCTGAATGCAATAC-AGGAAATCAGATGCATGTCTCAAACATTAGATGTTTTGATG---ATGAAAACATGT------GTCATACTCTAGT----AG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083678 104 - 159171411 ATGGCTGATTCAGATCTCATGGTTGGATGCAATACTAGGAAATCAGATGCATGTCTCAAATATTAGATGTTTTCGTG---ATGAAAACACGT------GTCATACTCTAAT----AG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6966216 104 - 7032639 ATGGTTGATTCAGATCTCATGGTTGAATGCAATACTAGGAAATCAGATGCATGTCTCAAATATTAGATGTTTTCATG---ATGAAAACACGT------GTCATATTCTAAT----AG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22787196 103 + 28711273 ATGGTTGAATCAGATCTTGTGGTTGAGTATAATACTAGAAAATTGGATATGTGTTGCAAACATTAGTTGTTTTCAGG---AGGAGGAAA-----------CAACCTCTAATAGTCAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21397945 113 + 61074082 GTGGTTGACTCAGACTTCATGGTTGAATGTAATAGTAGGACATCAGATACCCATATCAAAGATTAGATGTTTTGAAGCAAATGAAACTACCCCAAGTAGACAATATATAAA----GG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 378964 97 - 852752 ATGGTTGATTCATATCTCATGGTTGAATGCAATACTAGGAAATCAGATGCATGTCTCAAACATTA--TGTTTGGATG---AAGAGAAAACCT-----------CCTTCAAT----AG i dasNov3.JH570468 C 0 I 21 e mm10.chr11 22056443 45 - 122082543 I e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35890794 615 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=38745.000000 s hg38.chr17_GL383564v2_alt 74354 5 + 133151 TAT---CC s panTro5.chr17 16260955 5 + 83181570 TAT---CC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168413 5 + 83442489 TAT---CC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003472 5 + 4267968 TAT---CC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984418 5 - 2193130 TAT---CC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055940 5 - 77216781 TAT---CC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968553 5 - 80997621 TAT---CC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024795 5 + 10377808 TAT---CC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911903 5 - 8458610 TAT---CC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64867662 5 + 75148670 CAT---CC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097195 5 + 4244037 TAT---CC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119356 5 + 4569836 TAT---CC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083782 5 - 159171411 TAT---CC i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6966320 5 - 7032639 TAT---CC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22787299 5 + 28711273 TGT---CT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21398058 8 + 61074082 TACACGAC i canFam3.chr9 C 0 C 0 e mm10.chr11 22056443 45 - 122082543 I e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35890794 615 - 65901067 I e dasNov3.JH570468 379061 21 - 852752 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=167123.000000 s hg38.chr17_GL383564v2_alt 74359 22 + 133151 CA------------TGAAATAAATAGGAGGAATG s panTro5.chr17 16260960 22 + 83181570 CA------------TGAAATAAATAGGAGGAATG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168418 22 + 83442489 CA------------TGAAATAAATAGGAGGAATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003477 22 + 4267968 CA------------TGAAATAAATAGGAGGAATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984423 22 - 2193130 CA------------TGAAATAAATAGGAGGAATG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055945 22 - 77216781 CA------------TGAAATAAATAGGAGGAACG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968558 22 - 80997621 CA------------TGAAATAAATAGGAGGAACG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024800 22 + 10377808 CA------------TGAAATAAATAGGAGGAACG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911908 22 - 8458610 CA------------TGAAATAAATAAGAGGAACG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64867667 22 + 75148670 CA------------TGAAATAAATAGGAGGGACG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097200 22 + 4244037 CA------------TGAAATAAATAGGAGGAACG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119361 22 + 4569836 CA------------TGAAATAAATAGGAGGAACG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083787 19 - 159171411 CA------------TAAAATAAA---GAGGAATT i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6966325 19 - 7032639 CA------------TGAAATAAA---TAGGAATT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22787304 32 + 28711273 GAAGGCAGGAGATGTGAAATGAATGGGGAGTT-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21398066 22 + 61074082 CA------------TGAAATAAATGGGAGGAGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379082 21 - 852752 TG------------TGAAATGAATGGAAGGATG- i dasNov3.JH570468 I 21 C 0 e mm10.chr11 22056443 45 - 122082543 I e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e micMur3.chr16 35890794 615 - 65901067 I e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=25789.000000 s hg38.chr17_GL383564v2_alt 74381 2 + 133151 AA s panTro5.chr17 16260982 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168440 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003499 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984445 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055967 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968580 2 - 80997621 AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024822 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911930 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64867689 2 + 75148670 AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097222 2 + 4244037 AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119383 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083806 2 - 159171411 AA i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6966344 2 - 7032639 AA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35891409 2 - 65901067 AA i micMur3.chr16 I 615 C 0 s otoGar3.GL873537 22787336 2 + 28711273 AA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21398088 1 + 61074082 -A i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 379103 2 - 852752 AA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22056443 45 - 122082543 I e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=5175546.000000 s hg38.chr17_GL383564v2_alt 74383 439 + 133151 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAGAAAGAaatgatagaatcttggactgggtagaaatattagcaatcatttaatgaagcagccgtat--catacagatgagggaagggattcagagaagaggccagaatttc-cag-------------aggtga------------------c-------agctgggcttcaactcatgtttcctaagct----gcaatgcaatc----ctct-tcccatt---atattgaactgcctcAAAG--AAG--TTATTGAAAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAAGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAATCAGTATGAGGCCC s panTro5.chr17 16260984 439 + 83181570 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGACTTATCACTGAGCAAAGAG-GAAATAAGAAAGAaatgatagaatcttggactgggtagaaatattagcaatcatttaatgaagcagccgtat--catacagatgagggaagggattcagagaagcggccagaatttc-tag-------------aggtga------------------c-------agctgggcttcaactcatgtttcctaagct----gcaatgcaatc----ctct-tcccatt---atattgaactgcctcAAAG--AAG--TTATCGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAAGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168442 439 + 83442489 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGACTTATCACTGAGCAAAGAG-GAAATAAGAAAGAaatgatagaatcttggactgggtagaaatattagcaatcatttaatgaagcagccgtat--catacagatgagggaagggattcagagaagcggccagaatttc-tag-------------aggtga------------------c-------agctgggcttcaactcatgtttcctaagct----gcaatgcaatc----ctct-tcccatt---atattgaactgcctcAAAG--AAG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAAGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003501 439 + 4267968 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCATTGAGCAAAGGG-GAAATAAGAAAGAaatgatagaatcttggactgggttgaaatattagcaatcatttaatgaagcagccgtat--catacagatgagggaagggattcagagaagaggccagaatttc-cag-------------aggtga------------------c-------agctgggcttcaactcatgtttcctaagct----gcaatgcaatc----ctct-tcccatt---atattgaactgcctcAAAG--AAG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATA------------------------------------TCTTCCATTTTCTCCATTAGGAAGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984447 439 - 2193130 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAGAAAGAaatgatagaatcttggattgggtagaaatattagcaatcatttaatgcagcagctttat--catatagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtga------------------c-------agctgggcttcaactcatgtttcctaagct----gcaatgcaatc----ctct-tcccatc---atattgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAAGTCAATACCTTGCACTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30055969 439 - 77216781 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTCATCACTGAGCAAAGGG-GAAATAAAAAAGAaatgatagaatcttagattgggtagaaatactagcaatcatttaatgaagcagcctcat--catacagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtgg------------------c-------agctgggcttcaactcatgtttcctaagtt----gcaatgcaatc----ctct-tcccatt---atattgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAGGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27968582 439 - 80997621 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAAAAAGAaatgatagaatcttggattgggtagaaatactagcaatcatttaatgaagcagcctcat--catacagatgagggaagggattcagagaagAGGCCAGAATCTC-CAG-------------AGGTGG------------------C-------AGCTGGGCTTCAACTCATGTTTCCTAAGTT----GCAATGCAATC----CTCT-TCCCATT---ATATTGAACTGCCTCAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAGGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2024824 439 + 10377808 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAAAAAGAaatgatagaatcttggattgggtagaaatactagcaatcatttaatgaagcagcctcat--catacagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtgg------------------c-------agctgggcttcaactcatgtttcctaagtt----gcaatgcaatc----ctct-tcccatt---atattgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAGGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGATGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1911932 439 - 8458610 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAACAAAGGG-GAAATAAGAAAGAaatgatagaatcttggattgggtagaaatattagcaatcatttaatgaagcagtcttat--catacagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtgg------------------c-------agctgggcttcaactcatgtttcctaaatt----gcaatgcaatc----ctct-tcccatt---ttattgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAGGTCAACACCTTGCGCTGCCAGATTGGAGATCGCCTCAATGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64867691 439 + 75148670 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAGAAAGAaatgatagaatcttggattgggtagaaatattagcaatcatttaatgaagcagccttat--catacagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtgg------------------c-------agctgggcttcaactcatgtttcctaagtt----gcaatgcaatc----ctct-tcccatt---atactgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAAGTCAACACCTTGCGCTGCCAGATTGGAGATCGCCTCAATGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAATATGAGGCCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097224 439 + 4244037 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAGAAAGAaatgatagaatcttggattgggtagaaatattagcaatcatttaatgaagcagtcttat--catacagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtgg------------------c-------agctgggcttcaactcatgtttcctaaatt----gcaatgcaatc----ctct-tcccatt---ttattgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGGGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAGGTCAACACCTTGCGCTGCCAGATTGGAGACCGCCTCAATGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119385 439 + 4569836 ACCTG-GTTTCTCTCTATTTAAGTAGCAACAATTGTAAGCCAATTATCATGCCAGGCTTATCACTGAGCAAAGGG-GAAATAAGAAAGAaatgatagaatcttggattgggtagaaatattagcaatcatttaatgaagcagccttat--tatacagatgagggaagggattcagagaagaggccagaatctc-cag-------------aggtgg------------------c-------agctgggcttcaactcatgtttcctaagtt----gcaatgcaatc----cact-tcccatt---atattgaactgcctcAAAG--AGG--TTATTGATAGACTTCTTT------C------------------------------------------------------TGTGAGTTTATT------------------------------------TCTTCCCTTTTCTCCATTAGGAAGTCAACACCTTGCGCTGCCAGCTTGGAGACCGCCTCAACGTAGAGGTGGACGCTGCTCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46083808 436 - 159171411 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTATAAGCCAATTACCATGTCAGGCTTCTCACTGAGCAAAGGG-GAAATAAGAAAGAAATGACAGAATCTTGGACTGCGTAGAAATACTAGCAGTCATTTAATGAAGCAGACTTA---TATATAGATGAGAGAAAAAATTCAGAGAAGAGGCCATAAATTC-CAG-------------AGGTGA------------------C-------AACTGGGCTTTAATGCGTGTTTCCTAATCT----GCAATGCAATT----TTCT-TCCCATT---ATATGGAACTGCCTC--AA--AAA--TTATTTATAGACTTCTTT------C------------------------------------------------------CGTGAGTTTCTT------------------------------------TCTTACCTTTTCTTCATTAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAATCAGACCAGGAGTCAGTATGAGGCCC i calJac3.chr5 C 0 C 0 s aotNan1.NW_018502359v1 6966346 438 - 7032639 ACCTG-GTTTCTCTATATTTAAGTAGCAACAATTATAAGCCAATTATCATGTCAGGCTTATCACTGAGCAAAGGG-GAAATAAGAAAGAAATGGTAGAATCTTGGATTGGGTAGAAATACTAGCAATCATTTAATGAAGCAGACTTATTGTAtatagatgagagaagaaattcagagaagagcccataaattc-cag-------------aggtga------------------c-------aactgggctttaatgcatgtttcctaatct----gcaatgcaatt----ttct-tcccatt---atattgaactgcctc---A--AAG--TTATTTATAGACTTCTTT------C------------------------------------------------------TGTGAGTTTATT------------------------------------TCTTACCTTTTCTTCATTAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTGAACCAGGTCCTGAATCAGACCAGGAGTCAGTATGAGGCCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35891411 454 - 65901067 ACTTG-GTTTCT-TATAGTTAAGTAGCAACACTTATAAACCAGTTATCACACCAGGCTTATCACTGAGCAAAGGG-GAaatcagaaagaaatgacagaactccagcatgggaagaaatattagcagtcatttagtcaagcag-ctcat--tattcagatgaggacagagactcaga--agggacctgaatctc-caggggtaacttagctgggtgact---------------tc-------aactgggcttcaactcatgtttcctaaatt----ccaatgcaatc----ttct-tccctct---gcGTTGGACTCCCATAAAA--AGG--TTATTTATAGACGTTTTT---CCCC------------------------------------------------------TGTGGATTTAGT------------------------------------CCTTCCCTTTTCTCCACCAGGAAGTCAACATGCTGCGCTGCCAGATCGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCACCGTGGACCTGAACCAGGTGCTGAACGAGACCAGGAGCCAGTACGAGGCCC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22787338 415 + 28711273 ATGTG-GCTTCTCTATAGTTAAGTAGCTGCGATTACAAACCAATTATCACGCCAAGCTTATCAGTGAACAAATGG-GAAATCAGAAAGAAATGATAGAATCC-----------------------------TAGTCAAGCAG-CTCAT--TATGCAGAGGAGGGCAGAGACCCAGAG-GGGGGCCTGAACCTC-CAG-------------GGGTGACT---------------TC-------AACTGGTTTTCCACTCCTGTTTTCTAAATT----CCAATGCGATCCTCTTTCT-TCCCTCT---TCATTGTAATCTCACAAAA--AAG--TTACTCATAGACTTTTTT-----TC------------------------------------------------------TGTGGG-TCATC------------------------------------TTTTCCCTGTTCTCCCTCAGGAAGTCAACACTCTGCGCTGTCAGATCGGAGACCGCCTCAACGTGGAGGTAGATGCCGCCCCCACTGTGGACCTGAACCGAGTTCTAAATGAGACCAGGTGTCAGTACGAGGCCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22056488 529 - 122082543 ACCTGTGTTCCTTCATATTTAAGTAGCAACACTCATACATCACTTGTCACATTGAGCTTAGTACACAACAAATGC-AAAGTCAGCAGGAAATGTTAGAATCTTGGATCTCA-AGCAATATTAGCAATAACTTGTCCAAGCATCTCCAT---ACATAGATGAGGGGAGGACCTCAGG--------CAGAGTCAC-CAG-------------AGGCGA------------------TTTACATGAACTGG------ACTCAGGTTTTCTAACTTCAAGGCAATGC--TT----CTCTATCCCACTAAAATATTCCCTTGCCTCAAAATTGTG--TTTATGACAAACTTGCCT------CTTACAGACATTCACCCTTTTAAACTCTTGCATTCATCATTTAAAGAGTGAGCTGTGTGTGTTTCTTAAAGGCCGAAGGTCTCCTTAGGTCTGTGGTCCACTCTTTGCCTTTCCCCCCACCAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTAGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTGCTCAACGAGACCAGGTGTCAGTACGAGGCCC i mm10.chr11 I 45 C 0 s canFam3.chr9 21398090 465 + 61074082 ACCTG-GTTTCTCTATATTTAAGTAGCAATAATTATAAACCAGGTACCATGCCAGACTCATTACTGAGCAAAGGGAAAAATCAGAAAGAaatgatagaatcttggaatggaaagagacattagcaattacttattcaagcagcctcat--catgagaaggagg--agacacttagaaaggaaccgtgaatcacacag-------------aggtaatttagcagggttctatatc-------aactgggcttcaactcatacttcctaagtt----ccaTTGCAATC----TTCT-CCCCACC---AAACTGGACTCATTCAAAA--AGAATTTATTTATAGCCTGTTTTTTTCCCC------------------------------------------------------TGTGGGTTCATT------------------------------------CTTCCCCCTTCCTCCCTCAGGAAGTCAATACCCTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGATGCAGCCCCAACCGTGGACCTGAACCGTGTGCTCAATGAGACCAGGAGTCAGTATGAGGCCC i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 379105 432 - 852752 ACCTG-GTTTCTTTATATTTAAATAGCAACAATTATAAACCAGTTATCATGTCAGACTTATCA-TGAGCAATAGG-AAaatcagaaagaaatgatagaatcctggagtggaaagaaacatcagcaatcttttaatcaagcagcctcat--tatacagatgaggaaaA-----CAGAGAAAAGGTCTGAGTCAC-CAG-------------AAGTAACTTAATCAAGTTTTCCATT-------GACCTGACTTCGATTAATGATTCCTAAATT----CCAATG---------TTTG-ACTTGTT-----------------CAGAG--AGT--TTATCTATAGATGTCCTT------C------------------------------------------------------TGTTAGTTTATT------------------------------------TCTTCCCCTTATTCCATCAGGAAGCCAACTCCCTGCGTAGCCAGATCGGAGACCGCCTCAACGTGGAGGTGGACGCGGCGCCCACTGTGGACCTGAACCGTGTGCTGAACGAGACCAGATGCCAGTACGAGGCCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I e saiBol1.JH378271 1801859 1284 + 3513951 M a score=285634.000000 s hg38.chr17_GL383564v2_alt 74822 17 + 133151 TGGTGGAAACCAACCGC s panTro5.chr17 16261423 17 + 83181570 TGGTGGAAACCAACCGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168881 17 + 83442489 TGGTGGAAACCAACCGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003940 17 + 4267968 TGGTGGAAACCAACCGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984886 17 - 2193130 TGGTGGAAACTAACCGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056408 17 - 77216781 TGGTGGAAACCAACCGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969021 17 - 80997621 TGGTGGAAACCAACCGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025263 17 + 10377808 TGGTGGAAACCAACCGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912371 17 - 8458610 TGGTGGAAACCAACCGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868130 17 + 75148670 TGGTGGAAACCAACCGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097663 17 + 4244037 TGGTGGAAACCAACCGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119824 17 + 4569836 TGGTGGAAACCAACCGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084244 17 - 159171411 TGGTGGACACCAACCGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803143 17 + 3513951 TGGTGGACACCAACCGC i saiBol1.JH378271 M 1284 C 0 s aotNan1.NW_018502359v1 6966784 17 - 7032639 TGGTGGACACCAACCGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35891865 17 - 65901067 TGGTGGAGACCAACTGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22787753 17 + 28711273 TGGTGGACACCAACCGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057017 17 - 122082543 TGGTGGAAACCAACCGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21398555 17 + 61074082 TGGTGGAGACCAACCGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379537 17 - 852752 TGGTGGAGACCAACCGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T e cebCap1.NW_016107730v1 1750242 87033 + 1920343 I a score=1554414.000000 s hg38.chr17_GL383564v2_alt 74839 112 + 133151 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGGCCACTCAGGACCCGAGGCC--CCCCAGGGCCCCGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- s panTro5.chr17 16261440 112 + 83181570 AGAGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TTTAAGCACG-TGTCCACTCAGGACCCGAGGCC--CCCCAGGGGCCCGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16168898 112 + 83442489 AGAGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGTCCACTCAGGACCCGAGGCC--CCCCAGGGGCCCGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4003957 112 + 4267968 AGAGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGGCCACTCAGGACCCGAGGCC--CCCCAGGGCCCCAGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1984903 112 - 2193130 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGGCTGCTCAGGACCCGAGGCC--CTCCAGGGCCCTGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056425 114 - 77216781 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACA-TGGCCACTCAGGAACTGAGGCCCACCCTACCGCCCTGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969038 114 - 80997621 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGGCCACTCAGGAACTGAGGCCCACCCTACGGCCCCGGAGTCAGGGTCTGATCCT------TTCTCCCCTTG---G- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025280 114 + 10377808 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACA-TGGCCACTCAGGAACTGAGGCCCACCCTACGGCCCCGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912388 114 - 8458610 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACA-TGGCCACTCAGGAACTGAGGCCCACCCTACGGCCCTGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868147 114 + 75148670 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGGCCACTCAGGAACTGAGGCCCACCCTACAGCCCCGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097680 114 + 4244037 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACA-TGGCCACTCAGGAACTGAGGCCCACCCTACGGCCCCGGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119841 112 + 4569836 AGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-TGGCCACTCAGGACCCGAGG--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT------TTCTCCCTTTG---G- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084261 110 - 159171411 AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGCACG-CGGCCACTCAGGATACGAGG----CCCCTAGGTCCTGGAGGCAGGGTCTGATCCT------TTCTCCCCGTG---G- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803160 114 + 3513951 AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGGGCA--TCTAAGCACG-CAGTCACTCAGGACCCGAGGACCACCCCAGGGCCCCGGAGGCAGGGGCTGATCCT------TTCTCCCCTTG---G- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837275 117 + 1920343 AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGCACG-CAGTCACTCAGGACCTGAGGACCACCCCAGGGCCCTGGAAGCAGGGTCTGATCCT------TTCTCCCCTTGGGTG- i cebCap1.NW_016107730v1 I 87033 C 0 s aotNan1.NW_018502359v1 6966801 112 - 7032639 AGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAACA--TCTAAGGACGCCAGTCACTTAGGACCCGAGG---TCCCTAGGGCCCCAGAGGCAGGGTCTGATCCT------TTCTCCCCTTG---G- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35891882 116 - 65901067 AGGGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGTGTCTCTCAGCATG-TGGCCACTCGG-CCCCCAGACC--CCCCAGGGCCCTCGAGGCAGGGTGTGATCCTG---CGTCCTCCCCTTG---C- i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22787770 115 + 28711273 AGAGAAGTGGAGGAATGGTTCACCAGACAGGTGGGCA--TCTCAGCGCC-TGACCACTCAGTTCCTCTGAAC--CGCCAGGATCCCTCAGCCTGGGTCTGATCCCA---TTTCCTCCCGTTG---G- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057034 115 - 122082543 CGGGAAGTGGAGGAATGGTTCACCACACAGGTGGGCA--TCTGAGCCCA-GGGTCACTCAGAAACCAAGT----CCCCAGGACTGTA-AGGCAGGGTCTGATCCTGTCCCTCCCTCCCCTTG---C- i mm10.chr11 C 0 C 0 s canFam3.chr9 21398572 115 + 61074082 AGGGACGTGGAGGAATGGTTCACCACCCAGGTGGGCA--TCTCAGCACG-TGGCCACTGAGGGCCCTTGGCC--CCTCGGGGCCCTTGAGGCAGGGTCTGACCCTGTC---TTCTCCCCTGT---G- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379554 115 - 852752 AGGGACGTGGAGGAGTGGTTCATCACGCAGGTGGGAG--CCTAGGCGCG-TGGCCACGCAGGA-CCGTGGTC--CCTTGGGGCCCTGGAGGCAGCGCCTGATCCTGGC---TTCTCCCCTTT---GG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2974927 92462 + 8555354 T a score=2782847.000000 s hg38.chr17_GL383564v2_alt 74951 138 + 133151 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACAGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG s panTro5.chr17 16261552 138 + 83181570 GTGTTTCAGACCGGGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATTGAGTTGCAGGCCCAGCACAACCTGGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169010 138 + 83442489 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGTGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATTGAGTTGCAGGCCCAGCACAACCTGGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004069 139 + 4267968 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATTATCGAGCTGAGACGCAACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985015 138 - 2193130 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTATCAGGCAGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATAGAGCTACAGGCCCAGCACAACCTGGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056539 138 - 77216781 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATTGAACTGAGACGC-ACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969152 138 - 80997621 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAACTGAGACGC-ACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025394 138 + 10377808 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATTGAACTGAGACGC-ACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912502 138 - 8458610 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATCGAGCTACAGGCCCAGCACAACCTGGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868261 138 + 75148670 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATTGAACTGAGACGT-ACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097794 138 + 4244037 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2119953 138 + 4569836 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGTGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084371 138 - 159171411 GTGTTACAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803274 138 + 3513951 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGC-ACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837392 138 + 1920343 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6966913 138 - 7032639 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35891998 138 - 65901067 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGCGCCGC-ACGGTCAACACCCTGGAGATCGAGCTGCAGGGCCAGCACAACCTGGTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2882465 138 + 8555354 GTGTTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCCGAGCAGCTGCAGTCCTGCCAGGCAGAGATTGTCGAGCTGAGACGC-ACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAGCATGGTG i proCoq1.NW_012135969v1 T 92462 I 68054 s otoGar3.GL873537 22787885 138 + 28711273 CTATTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATTGAGCTGAGACGA-ACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057149 138 - 122082543 CTATTGCAGACAGAGGAGCTGAACAAGCAGGTGGTGTCTAGCTCAGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGC-ACAGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAGCATGGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21398687 138 + 61074082 CTATTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGC-ACGGTCAACGCCTTGGAGATTGAGCTCCAGGCTCAGCACAACCTGGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379669 138 - 852752 ACATTTCAGACCGAGGAGCTCAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTCCCAGGCTGAGATCATCGAGCTGAGGCGC-ACGGTCAACGCCCTGGAGATTGAGCTGCAGGCCCAGCACAACCTGGTG i dasNov3.JH570468 C 0 C 0 a score=393152.000000 s hg38.chr17_GL383564v2_alt 75089 29 + 133151 TGTATTGTTCAGACCTGCTGGTGAGCGAT s panTro5.chr17 16261690 29 + 83181570 TGTATTGTTCAGACCTGCTGGTGAGCGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169148 29 + 83442489 TGTATTGTTCAGACCTGCTGGTGAGCGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004208 29 + 4267968 TGTATTGTTCAGACCTGCTGGTGAGCGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985153 29 - 2193130 TGTATTGTTCAGACCTGCTGGTGAGCGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056677 29 - 77216781 TGTATTGTTCAGCCCTGCTGGTGAATGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969290 29 - 80997621 TGTATTGTTCAGCCCTGCTGGTGAATGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025532 29 + 10377808 TGTATTGTTCAGCCCTGCTGGTGAATGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912640 29 - 8458610 TGTATTGTTCAGCCCTGCTGGTGAGCGAT i cerAty1.NW_012006043v1 C 0 T 14160 s chlSab2.chr16 64868399 29 + 75148670 TGTATTGTTCAGCCCTGCTGGTGAGCGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097932 29 + 4244037 TGTATTGTTCAGCCCTGCTGGTGAACGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120091 29 + 4569836 TGTATTGTTCTGACCTGCTGGTGAGCGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084509 29 - 159171411 TGTATTGTTCAGCCCTGCTGGTGAGCGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803412 29 + 3513951 TGTATTGTTCAGCCCTGCTGATGAGCAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837530 29 + 1920343 TGTATTGTTCAGCCCTGCTGGTGAGCGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967051 29 - 7032639 TGTATTGTTCAGCCCTGCTGGTGAGCGAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892136 29 - 65901067 TGTGCTGCTCTGGCCTGCTGGGGAGCCGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950657 29 + 8555354 TGTGCTGCTCAGACCTGCTGGAGAGCCAG i proCoq1.NW_012135969v1 I 68054 C 0 s otoGar3.GL873537 22788023 29 + 28711273 AGTGTGGCTCAGACCTGATAGAGAGCAGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057287 28 - 122082543 TGTAGTGTCCAGA-CTGCTGCTGAGCAGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21398825 12 + 61074082 GGTGTTGTTCAG----------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379807 26 - 852752 TGTGTGGCTCAGACCTGCCCT---GCGGT i dasNov3.JH570468 C 0 C 0 a score=51722.000000 s hg38.chr17_GL383564v2_alt 75118 3 + 133151 GGG s panTro5.chr17 16261719 3 + 83181570 GGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169177 3 + 83442489 GGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004237 3 + 4267968 GGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985182 3 - 2193130 GGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056706 3 - 77216781 GGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969319 3 - 80997621 GGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025561 3 + 10377808 GGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898509 3 - 8458610 GAG i cerAty1.NW_012006043v1 T 14160 C 0 s chlSab2.chr16 64868428 3 + 75148670 GGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097961 3 + 4244037 GGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120120 3 + 4569836 GGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084538 3 - 159171411 GGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803441 3 + 3513951 CGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837559 3 + 1920343 GGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967080 3 - 7032639 GGG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892165 3 - 65901067 GGG i micMur3.chr16 C 0 T 12298 s proCoq1.NW_012135969v1 2950686 3 + 8555354 GGG i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22788052 3 + 28711273 GGG i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22057315 3 - 122082543 GTG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 379833 3 - 852752 GGG i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21398837 0 + 61074082 C a score=336026.000000 s hg38.chr17_GL383564v2_alt 75121 30 + 133151 -------AACTTGGGAGGC-AGAGTC----------------TTGGGGATGCCC s panTro5.chr17 16261722 30 + 83181570 -------AACTTGGGAGGC-AGAGTC----------------TTGGGGATGCCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169180 30 + 83442489 -------AACTTGGGAGGC-AGAGTC----------------TTGGGGATGCCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004240 30 + 4267968 -------AACTTGGGAGGC-AGAGTC----------------TTGGGGATGCCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985185 30 - 2193130 -------AAGTTGGGAGGC-AGAGTC----------------CTGGGGATGTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056709 30 - 77216781 -------AAGTTGGGAGGC-AGAGTC----------------CTGGGGACATCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969322 30 - 80997621 -------AAGTTGGGAGGC-AGAGTC----------------CTGGGGACATCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025564 30 + 10377808 -------AAGTTGGGAGGC-AGAGTC----------------CTGGGGACATCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1898512 30 - 8458610 -------AAGTTGGGAGAC-AGAGTT----------------CCAGGGATGTGT i cerAty1.NW_012006043v1 C 0 I 14132 s chlSab2.chr16 64868431 30 + 75148670 -------AAGTTGGGAGGC-AGAGTC----------------CTGGGGACACCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097964 30 + 4244037 -------AAGTTGGGAGGC-AGAGTC----------------CTGGGGACACCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120123 30 + 4569836 -------AAATTGGGAGGC-AGAGTC----------------CTGGGGACACCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084541 30 - 159171411 -------ACGTTGGGAGGC-AGAGTC----------------CCGGGGCTGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803444 30 + 3513951 -------ACGTTGGGAGGC-AGAGTC----------------CCAGGGCTGCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837562 30 + 1920343 -------ACGTTGGGAGGC-AGAGTC----------------CCGGGGCTGCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967083 30 - 7032639 -------ACGTTGGGAGGC-AGAGTC----------------CCGGGGCTGCCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35879870 30 - 65901067 -------AGCCGGGGAGGT-GGGGTC----------------ACGGGGATGCCC i micMur3.chr16 T 12298 C 0 s proCoq1.NW_012135969v1 2950690 30 + 8555354 -------AGGCGGGGAGGC-GGAGTC----------------ACGGGGATGCCC i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22788056 46 + 28711273 -------GGTTGGGGAAGT-GGGGTCACAAGTAGGGGGGGTTACGGGGATGCCC i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22057318 30 - 122082543 -------GAGTGGGGAGGC-AGAGTC----------------ACTGGGGTGTCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21398837 10 + 61074082 --------------------------------------------GGTAATGCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379836 38 - 852752 AAGGGCCGGGTTGGGGAACGGGAGTC----------------CTGGGCATCCCC i dasNov3.JH570468 C 0 C 0 a score=405820.000000 s hg38.chr17_GL383564v2_alt 75151 33 + 133151 TTGGGGCCACACACTCTT-------------------------------------------CTTAGCT-CTTGGAGC s panTro5.chr17 16261752 33 + 83181570 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169210 33 + 83442489 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004270 33 + 4267968 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985215 33 - 2193130 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056739 34 - 77216781 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCTCCTTGGAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969352 34 - 80997621 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCTCCTTGGAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025594 34 + 10377808 TTGGGGCCACATACTCTC-------------------------------------------CTTAGCTCCTTGGAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912674 33 - 8458610 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCT-CTTGGAGC i cerAty1.NW_012006043v1 I 14132 C 0 s chlSab2.chr16 64868461 34 + 75148670 TTGGGGACACACACTCTC-------------------------------------------CTTAGCTCCTTGGAAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2097994 34 + 4244037 TTGGGGCCACACACTCTC-------------------------------------------CTTAGCTCCTTGGAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120153 34 + 4569836 TTGGGGACACACACTCTC-------------------------------------------CTTAGCTCCTTGGAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084571 33 - 159171411 TTGGGACCACACGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803474 33 + 3513951 TTGGGACCACACGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1837592 33 + 1920343 TTGGGACCACATGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC i cebCap1.NW_016107730v1 C 0 I 36 s aotNan1.NW_018502359v1 6967113 33 - 7032639 TTGGGACCACACGCTCTC-------------------------------------------CTTAGCT-CTTGGAGC i aotNan1.NW_018502359v1 C 0 I 36 s micMur3.chr16 35879900 32 - 65901067 TTTGGGCCACAGGCTCTC-------------------------------------------CTTAGTG--TTGGATC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950720 32 + 8555354 TTTGGGCCACACGCTCTC-------------------------------------------CTTAGTC--TTGGATC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22788102 30 + 28711273 TCTGGGGCACAG--TCTC-------------------------------------------CTTAGCT--CTGAGAT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057348 76 - 122082543 TTGCAGcctctctctctctctctctctctccctgtccctccccctcccccctccctctcTTCTTAGCT-CATGAAGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21398847 23 + 61074082 ----------ATGCTCTC-------------------------------------------CTGAACC-TGTGAAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379874 32 - 852752 TGGGGACCAGGCACTCTC-------------------------------------------CTTGACC--TGGATGC i dasNov3.JH570468 C 0 C 0 a score=-541.000000 s hg38.chr17_GL383564v2_alt 75184 1 + 133151 -T s panTro5.chr17 16261785 1 + 83181570 -T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169243 1 + 83442489 -T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004303 1 + 4267968 -T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985248 1 - 2193130 -T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056773 1 - 77216781 -T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969386 1 - 80997621 -T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025628 1 + 10377808 -T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912707 1 - 8458610 -T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868495 1 + 75148670 -T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098028 1 + 4244037 -T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120187 1 + 4569836 -T i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35879932 1 - 65901067 -T i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950752 1 + 8555354 -T i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22788132 1 + 28711273 -C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057424 1 - 122082543 -C i mm10.chr11 C 0 C 0 s canFam3.chr9 21398870 1 + 61074082 -C i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379906 1 - 852752 G- i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6967146 36 - 7032639 I e cebCap1.NW_016107730v1 1837625 36 + 1920343 I e saiBol1.JH378271 1803507 0 + 3513951 C e calJac3.chr5 46084604 0 - 159171411 C a score=114812.000000 s hg38.chr17_GL383564v2_alt 75185 13 + 133151 TGTGAGT-TTTTTC s panTro5.chr17 16261786 13 + 83181570 TGTGAGT-TCTTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169244 13 + 83442489 TGTGAGT-TCTTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004304 13 + 4267968 TGTGAGT-TTTTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985249 13 - 2193130 TGTGAGT-TTTTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056774 13 - 77216781 TGTGAGT-TTTTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969387 13 - 80997621 TGTGAGT-TTTTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025629 13 + 10377808 TGTGAGT-TTTTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912708 13 - 8458610 TGTGACT-TCCTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868496 13 + 75148670 TGTGAGT-TTTTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098029 13 + 4244037 TGTGAGT-TTTTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120188 14 + 4569836 TGTGAGTATTTTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084604 13 - 159171411 AGTGACT-TCCTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803507 13 + 3513951 TGTGATT-TCCTTG i saiBol1.JH378271 C 0 C 0 s micMur3.chr16 35879933 12 - 65901067 TGTGAGT-TCTTG- i micMur3.chr16 C 0 I 12289 s proCoq1.NW_012135969v1 2950753 13 + 8555354 GGTGAAG-TCTTTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22788133 4 + 28711273 TATG---------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057425 13 - 122082543 TGTGACT-TCTCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21398871 13 + 61074082 TGTGACT-TCTCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379907 13 - 852752 TGTGGCT-TCTTTG i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6967146 36 - 7032639 I e cebCap1.NW_016107730v1 1837625 36 + 1920343 I a score=247408.000000 s hg38.chr17_GL383564v2_alt 75198 22 + 133151 GAACCCCATGGAGGAACCCTAT s panTro5.chr17 16261799 22 + 83181570 GAACCCCATGGAGGAACCCTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169257 22 + 83442489 GAACCCCATGGAGGAACCCTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004317 22 + 4267968 GAACCCCATGGAGGAACCCTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985262 22 - 2193130 GAACCCCATGGAGGAACCCTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056787 22 - 77216781 GAACTCCATGGAGGAACCCTAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969400 22 - 80997621 GAACTCCATGGAGGAACCCTAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025642 22 + 10377808 GAACTCCATGGAGGAACCCTAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912721 22 - 8458610 GAATCCTATGAAGAAACCCTTT i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64868509 22 + 75148670 GAACTCCATGGAGGAACCCTAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098042 22 + 4244037 GAACTCCATGGAGGAACCCTAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120202 22 + 4569836 GAACTCCATGGAGGAACCCTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084617 22 - 159171411 GAATCCTATGAAGAAAGGCTTT i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1803520 22 + 3513951 GAATCCTATGAAGGAAGGCTTT i saiBol1.JH378271 C 0 I 1 s micMur3.chr16 35892234 22 - 65901067 GAACCCCATGGAGCCACCCTTT i micMur3.chr16 I 12289 I 1 s proCoq1.NW_012135969v1 2950766 22 + 8555354 GACCTCCATGGAGAAACCCTTT i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22788137 22 + 28711273 GAACCCCATGGAGAAACCCTGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057438 21 - 122082543 GAAGTC-ATGCAGAAACCTTCA i mm10.chr11 C 0 I 1 s canFam3.chr9 21398884 22 + 61074082 AAACCCCATGGAGAAGCCCCCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379920 22 - 852752 GAACCACGTAGAGAAAGGCTTA i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6967146 36 - 7032639 I e cebCap1.NW_016107730v1 1837625 36 + 1920343 I a score=724144.000000 s hg38.chr17_GL383564v2_alt 75220 47 + 133151 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-TCCCACCACAGCGATAC s panTro5.chr17 16261821 47 + 83181570 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169279 47 + 83442489 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004339 47 + 4267968 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985284 47 - 2193130 AAGGAGCAGCTCTCTGACACTCTTGA---------TCTT-CCCCACCACAGCGAGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056809 47 - 77216781 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAAAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969422 47 - 80997621 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAAAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025664 47 + 10377808 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGAGAAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912744 47 - 8458610 AAGGAGCAGCTCTCTGACATTACTGA---------TCTT-CCCCACCACAGCGAAAC i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64868531 47 + 75148670 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098064 47 + 4244037 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CTCCACCACAGCGAAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120224 47 + 4569836 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084640 47 - 159171411 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1803543 47 + 3513951 AAAGAGCAGCCCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1837661 47 + 1920343 AAGGAGCAGCTCTCTGACATTCCTGA---------TCTT-CCCCACCACAGCGAGAC i cebCap1.NW_016107730v1 I 36 I 14801 s aotNan1.NW_018502359v1 6967182 48 - 7032639 AAAGATCAGCCCTCTGACATTCCTGA---------TCTTCCCCCACCACAGCGAGAC i aotNan1.NW_018502359v1 I 36 C 0 s micMur3.chr16 35892257 46 - 65901067 AAGGAGCAGCTGTCTGACACGCTTTA---------TGTC-CCCC-TGACAGAGAAAC i micMur3.chr16 I 1 C 0 s proCoq1.NW_012135969v1 2950789 46 + 8555354 AAGGAGCAGCTCTCTGACATGCTTCA---------TCTC-CCTC-TCACAGAGAAAC i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22788159 55 + 28711273 AAGGAGCAGCTCTCTGACATTCTGTACTTGTTCCCCATC-CATC-CTCCAGAGAAAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057460 47 - 122082543 AGGGAACAGCTCTGTGACAGCCTTTG---------TTTT-CTCCCCCACAGAGAAAC i mm10.chr11 I 1 C 0 s canFam3.chr9 21398906 46 + 61074082 GGGGAGTGGCTCTGTGACATTCTTTG---------TCTT-CCCCAC-ACAGAGGGAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379942 46 - 852752 GAGGAGCCCCTCCCTGATGCCCTTCA---------TGTT--CCCACCACAGAGAAAC i dasNov3.JH570468 C 0 C 0 a score=58215.000000 s hg38.chr17_GL383564v2_alt 75267 3 + 133151 TCT s panTro5.chr17 16261868 3 + 83181570 TCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169326 3 + 83442489 TCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004386 3 + 4267968 TCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985331 3 - 2193130 TCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056856 3 - 77216781 TCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969469 3 - 80997621 TCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025711 3 + 10377808 TCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912791 3 - 8458610 TCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868578 3 + 75148670 TCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098111 3 + 4244037 TCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120271 3 + 4569836 TCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084687 3 - 159171411 TCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803590 3 + 3513951 TCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852509 3 + 1920343 TCT i cebCap1.NW_016107730v1 I 14801 C 0 s aotNan1.NW_018502359v1 6967230 3 - 7032639 TCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892303 3 - 65901067 TCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950835 3 + 8555354 TCT i proCoq1.NW_012135969v1 C 0 T 67718 s otoGar3.GL873537 22788214 3 + 28711273 TCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057507 3 - 122082543 TCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21398952 3 + 61074082 TCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379988 3 - 852752 TCC i dasNov3.JH570468 C 0 C 0 a score=423116.000000 s hg38.chr17_GL383564v2_alt 75270 24 + 133151 CTGGAAAACACGCTGACAGAGAGC s panTro5.chr17 16261871 24 + 83181570 CTGGAAAACACGCTGACGGAGAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169329 24 + 83442489 CTGGAAAACACGCTGACGGAGAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004389 24 + 4267968 CTGGAAAACACGCTGACGGAGAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985334 24 - 2193130 CTGGAAAACACGCTGACAGAGAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056859 24 - 77216781 CTGGAAAACACGCTGACGGAGAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969472 24 - 80997621 CTGGAAAACACGCTGACGGAGAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025714 24 + 10377808 CTGGAAAACACGCTGACGGAGAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912794 24 - 8458610 CTGGAAAACACACTGACGGAGAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868581 24 + 75148670 CTGGAAAACACGCTGACGGAGAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098114 24 + 4244037 CTGGAAAACACGCTGACGGAGAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120274 24 + 4569836 CTGGAAAACACACTGACGGAGAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084690 24 - 159171411 CTGGAAAACACGCTGACGGAGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803593 24 + 3513951 CTGGAAAACACGCTGACGGAGAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852512 24 + 1920343 CTGGAAAACACGCTGACTGAGAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967233 24 - 7032639 CTGGAAAACACGCTGACGGAGAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892306 24 - 65901067 CTGGAAAACACGCTGACGGAGAGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22788217 24 + 28711273 CTGGAAAACACGCTGACAGAGAGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22057510 24 - 122082543 CTGGAGAATACCCTGGCAGAGAGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21398955 24 + 61074082 CTGGAGAACACACTGACAGAGACT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 379991 24 - 852752 CTGGAAAACACGCTGAACGAGACT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2950838 67718 + 8555354 T a score=1494288.000000 s hg38.chr17_GL383564v2_alt 75294 78 + 133151 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGC s panTro5.chr17 16261895 78 + 83181570 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169353 78 + 83442489 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004413 78 + 4267968 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985358 78 - 2193130 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGACTGATCACCAATGTGGAGTCCCAGCTGGCGGAGATCCGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056883 78 - 77216781 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969496 78 - 80997621 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025738 78 + 10377808 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912818 78 - 8458610 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGTTACAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868605 78 + 75148670 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGTTACAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098138 78 + 4244037 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCGCAGCTGGCGGAGATCCGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120298 78 + 4569836 GAGGCCCGCTATAGCTCCCAGCTATCCCAGGTACAGAGCCTGATCACCAACGTGGAGTCACAGCTGGCGGAGATCCGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084714 78 - 159171411 GAGGCCCGCTACAGCTCCCAGCTGGCCCAGGTGCAGTGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803617 78 + 3513951 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCATGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852536 78 + 1920343 GAGGCCCGCTACAGCACCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCAGAGATCCGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967257 78 - 7032639 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892330 78 - 65901067 GAGGCCCGCTACAGCTCCCAGCTGTCCCAGGTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTGGCCGAGATCCGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2883120 78 + 8555354 GAGGCCCGCTATGGCACCCAGCTGTCGCAGGTGCAGTGCATGATCACCAGCGTGGAGTCCCAGTTGGCTGAGATCCGG i proCoq1.NW_012135969v1 T 67718 C 0 s otoGar3.GL873537 22788241 78 + 28711273 GAGGCCCGCTATAGCTCCCAGCTGGCCCAGGTGCAGTGCATGGTGACCAACGTGGAGGCCCAGCTGGCGGAGATCCGC i otoGar3.GL873537 C 0 T 97050 s mm10.chr11 22057534 78 - 122082543 GAGGCTCGCTACAGCTCTCAGCTGTCCCAGGTGCAGTGCCTGATCACCAACGTGGAGTCCCAGCTTGGTGAGATCCGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21398979 78 + 61074082 GAGGCGCGCTACAGCTCTCAGCTGAACCAGGTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTTGCTGAGATCAGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380015 78 - 852752 GAGGCCCGCTACAGCTCCCAGCTGGCCCAGTTGCAGTCCCTGATCAGCAGCGTGGAGTCCCAGCTGGCGGAGATCCGG i dasNov3.JH570468 C 0 C 0 a score=24080.000000 s hg38.chr17_GL383564v2_alt 75372 3 + 133151 AGT s panTro5.chr17 16261973 3 + 83181570 AGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169431 3 + 83442489 AGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004491 3 + 4267968 AGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985436 3 - 2193130 AGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056961 3 - 77216781 TGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969574 3 - 80997621 TGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025816 3 + 10377808 TGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912896 3 - 8458610 TGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868683 3 + 75148670 TGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098216 3 + 4244037 TGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120376 3 + 4569836 TGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084792 3 - 159171411 GGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803695 3 + 3513951 TGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852614 3 + 1920343 TGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967335 3 - 7032639 GGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892408 3 - 65901067 TGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2883198 3 + 8555354 GCC i proCoq1.NW_012135969v1 C 0 I 96013 s otoGar3.GL873537 22691269 3 + 28711273 TGT i otoGar3.GL873537 T 97050 C 0 s mm10.chr11 22057612 2 - 122082543 -GC i mm10.chr11 C 0 I 1 s canFam3.chr9 21399057 3 + 61074082 TGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380093 3 - 852752 GGC i dasNov3.JH570468 C 0 C 0 a score=2415668.000000 s hg38.chr17_GL383564v2_alt 75375 126 + 133151 GACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCGCGGCTGGAGTGTGAGATCAACACATACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGCGGACGG s panTro5.chr17 16261976 126 + 83181570 GACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCGCGGCTGGAGTGCGAGATCAACACGTACCGGAGTCTGTTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGACGGGCGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169434 126 + 83442489 GACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCGCGGCTGGAGTGCGAGATCAACACGTACCGGAGTCTGCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGACGGGCGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004494 126 + 4267968 GACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCGCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGCGGGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985439 126 - 2193130 GACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGCGGGCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30056964 126 - 77216781 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969577 126 - 80997621 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025819 126 + 10377808 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1912899 126 - 8458610 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868686 126 + 75148670 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCTCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098219 126 + 4244037 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120379 126 + 4569836 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCACGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTGGTGGGCGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084795 126 - 159171411 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTAAG--TA--CCTAGTAGGCGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803698 126 + 3513951 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACGTATCGGAGCCTGCTGGAGAGTGAGGACTGCAAGTGAG--TA--CCTAGTAGGCGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852617 126 + 1920343 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGTGAGATCAACACATACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAG--TA--CCTAGTAGGTGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967338 126 - 7032639 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTAAG--TA--CCTAGTAGGCAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892411 126 - 65901067 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCCCGGCTGGAGTGCGAGATCAACACGTACCGGGGCCTGCTGGACGGGGAGGACTGCAAGTGAG--TA--CCTGGCAGGCGG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2979214 125 + 8555354 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCCCGGCTGGAGTGCGAGATCAACACGTACCGGGGGCTGCTGGAGAGTGAGGACTGCAAGTGAG--TA--CCGGGC-GGCGG i proCoq1.NW_012135969v1 I 96013 C 0 s otoGar3.GL873537 22691272 127 + 28711273 GACTTGGAGCGGCAGAACCAGGAGTACCAGATGCTGCTGGACGTGCGGGCCCGGCTGGAGGGCGAGATCAACACATACCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGCATG--CCCAGT-GGAGG i otoGar3.GL873537 C 0 I 97421 s mm10.chr11 22057615 126 - 122082543 GACCTGGAGCGTCAGAACCAGGAGTACCAGGTGTTGCTGGATGTCAAGGCCCGGCTGGAGTGTGAGATCAACACGTATAGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAG--TT--GCTGGCTGCTGT i mm10.chr11 I 1 I 6 s canFam3.chr9 21399060 126 + 61074082 GACCTGGAGAGGCAGAACCAGGAATACCAGGTGCTGTTGGACGTCAAGGCCCGGCTGGAGTGTGAGATCAACACGTACCGGGGTCTGCTGGAGAGCGAGGACTGCAAGTGAG--TA--GGGAGCAGGCCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380096 128 - 852752 GACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCCCGGCTGGAGGGCGAGATCAACACGTACCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAG--TAGCCCTTGCAGGTAG i dasNov3.JH570468 C 0 C 0 a score=651564.000000 s hg38.chr17_GL383564v2_alt 75501 51 + 133151 CACCCCTGCAAGGGACAG----GCAC-TGTTCTACTGTAGGATAAAACAGAGACTT s panTro5.chr17 16262102 51 + 83181570 CACCCCTGCAAGGGACAG----GCAC-TGTTCTACTGTAGGATAAAATAGGGACTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169560 51 + 83442489 CACCCCTGCAAGGGACAG----GCAC-TGTTCTACTGTAGGATAAAATAGGGACTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004620 51 + 4267968 CACCCCTGCAAGGGACAG----GCAC-TGTTCTACTGTAGGGTAAAACAGGGACTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985565 51 - 2193130 CACCCCTGCAAGGGACAG----GCAC-TGTTCTACTGTAGGATAAAACAGGGACTT i nomLeu3.chrUn_GL397460_1 C 0 M 182 s rheMac8.chr16 30057090 51 - 77216781 CACCCCTGCAAGGCACAG----TCAC-TATTCTACTGTAGGATAAAACAGGGACTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969703 51 - 80997621 CACCCCTGCAAGGCACAG----TCAC-TATTCTACTGTAGGATAAAGCAGGGACTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025945 51 + 10377808 CACCCCTGCAAGGCACAG----TCAC-TATTCTACTGTAGGATAGAACAGGGACTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1913025 51 - 8458610 CACCCCTGCAAGGCACAG----TCAC-TATTCTACTGTAGGATAAAACAGGGACTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868812 51 + 75148670 CACCCCTGCAAGGCACAG----TCAC-TATTCTACTGTAGGATAAAACAGGGACTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098345 51 + 4244037 CACCCCTACAAGGCACAG----TCAC-TATTCTACTGTAGGATAAAACAGGGACTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120505 51 + 4569836 CACCCCTGCAAGGCACAG----TCAC-TATTCTACTGTAGGATAAAACAGGGACTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084921 51 - 159171411 CATCCCTGCAAGGCATAT----GCAC-AGTTCTACTGTAGGATAAAACAGGGACTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803824 51 + 3513951 CATCCCTGCAAGGCATAT----GTAC-AATTCTACTATAGGATAAAATAGGGACTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852743 51 + 1920343 CATCCCTGCAAGGCATAT----GCAC-AGTTCTACTATAGGATAAAATTGGGACTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967464 51 - 7032639 CATCCCTGCAAGGCATAT----GCAC-AGTTCTACTATAGGATAAAATAGGGACTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892537 55 - 65901067 CACCTCTGCAAGGCACAGACATGCAC-AGTTCTACTAAAGGATAAAACGGGGACTT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2979339 55 + 8555354 CACCTCTGCAAGGCACACACACGCGC-AGTTCTACTAAAGGATAAAACAGGGACTT i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22057747 44 - 122082543 --CACCTG--AGGCACAT----GCAAGTGTCTTA----AGAATAATAAAGGGACTT i mm10.chr11 I 6 C 0 s canFam3.chr9 21399186 47 + 61074082 CATTCTTGCAAGGCACAT----GC---AGTTTTACTCAAGGACAAAACAGAGTT-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380224 47 - 852752 TTCCCCTGCGAGAGACAC----ACAC-AGTTCTA---AAGCATCAAA-GGGGTCTT i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22691399 97421 + 28711273 I a score=1197790.000000 s hg38.chr17_GL383564v2_alt 75552 108 + 133151 TGAAAATCAAGTTTCAGATGCCAATCTGTCTGTAGAGGCGAGAGTTTTATATTACAGCCGTGGGAAGTGTAGGATATTTGTTGCTAACATTATCTGGGCTAAAGATA-C s panTro5.chr17 16262153 108 + 83181570 TGAAAATCAAGTTTCAGGTGCCAATCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCCGTGGGAAGTATAGGATATTTGTTGCTAACATTTTCTGGGCTAAAGATA-C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169611 108 + 83442489 TGAAAATCAAGTTTCAGGTGCCAATCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCCGTGGGAAGTATAGGATATTTGTTGCTAACATTTTCTGGGCTAAAGATA-C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004671 107 + 4267968 TGAAAATCAAGTTTCAG-TGCCAATCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCCGTGGGAAGTATAGGATATTTGTTGCTAACATTATCTGGGCTAAAGATA-C i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30057141 108 - 77216781 TGAAGATAAAGTTTCAGATGCCAACCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTATTGGATATTTATTGCTAACATTACCCGGGCTAAATATA-T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969754 108 - 80997621 TGAAGATAAAGTTTCAGATGCCAACCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTATTGGATATTTATTGCTAACATTACCCGGGCTAAATATA-T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2025996 108 + 10377808 TGAAGACAAAGTTTCAGATGCCAACCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTATTGGATATTTATTGCTAACATTACCCGGGCTAAATATA-T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1913076 108 - 8458610 TGAAGATCAAGTTTCAGATGCCAACCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTATAGGATAGTTATTGCTAACATTACCCAGGCTAAACACA-T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868863 108 + 75148670 TGAAGATCAAGTTTCAGATGCCAACCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTATAGGATATTTATTGCTAACATGACCTGGTCTAAATATA-T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098396 108 + 4244037 TGAAGATCAAGTTTCAGATGCCAACCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTATTGGATATTTATTGCTAACATTACCCGGGCTAAATATA-T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120556 107 + 4569836 TGGAGATCAAGTTTCAGATGCCAACCTGTCTGTAGAGA-AAGAGATTTATATTACACCTGTGGGAAGTATAGGATATTTATTGCTGACATTACCCAGGCTAAATATA-T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46084972 108 - 159171411 CAAAGATCAAGTTTCAGATGCTTGTGTATCTGTAGAGGCCAGAGTTTTATATTACAGCCCTGGGAAGTACAGGATATTTGTTGCTAACATTACCTGGGCTAAAGATA-T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803875 108 + 3513951 CAAAGATCAAGTTTGAGATGCCTGTCTGTCTGTAGAGGCCAGGGTTTTATATTACAGCTGTGGGAAGTACAGGATATTTATTGCTAACATTACCTGGGCTAAAGATG-T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852794 109 + 1920343 CAAAGATAAAGTTTCAGATGCCTGTCTGTCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTACAGGATATTTGTTGCTAACATTACCTGGGCTAAAGATATT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967515 104 - 7032639 CAAAGATCAAGTTTCAGATGCCGG----TCTGTAGAGGCCAGAGTTTTATATTACAGCTGTGGGAAGTACAGGATATTTGTTGCTAACATTACCCGGGCTAAAGATA-T i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892592 103 - 65901067 TGCAGATCAGGTGTCAGATGCTGATCTGTCTGCAGAGACCAGAGCTTTATGAT-----GATGAGAAGCGTAGGTTATTTGTTGCTTACATTACCTGGGCTAAAGATA-T i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2979394 108 + 8555354 TGCCGATCAGGTGTCAGATGCCGATCTGTCTGTGGAGACCAGAGTTTTATATTACAGCAGTGGGAAGCGTAGGGTATTGATTGCTTACCTTACTTGGGCTAAAGGTA-T i proCoq1.NW_012135969v1 C 0 C 0 s mm10.chr11 22057791 82 - 122082543 TGCAAATGAAAT-TCAGACCCCAGTATATCTCTAGAGACC-------------------------AGTGTAAGGTTCTTGCTATCAGTAGTAGATGGGTTAAAGGTA-T i mm10.chr11 C 0 C 0 s canFam3.chr9 21399233 107 + 61074082 TGAAGGTCAAGTTTCAGAGGCCAATGTGTCTGCATAGACCAGAGTTTTCTGTTGCAGTGGTGTACCATGGAAGATATTT-TTTTTGTCATTACCTGGCTGGAAGGTA-T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380271 105 - 852752 TGCAGGTCTAGTTGCAGATGCCAACTTG--TGTCGAGACCAGACTTTTATAATATGGCCAAGGGAAAGGCAAGGCCCCTGCTGCTCTTACC-CCAGGGCTAAAGGGC-T i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22691399 97421 + 28711273 I e nomLeu3.chrUn_GL397460_1 1985616 182 - 2193130 M a score=300064.000000 s hg38.chr17_GL383564v2_alt 75660 22 + 133151 TTTCTTTTACAAAAGATAGTCA s panTro5.chr17 16262261 22 + 83181570 TTTCTTTTACAAAAGATAGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169719 22 + 83442489 TTTCTTTTACAAAAGATAGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004778 22 + 4267968 TTTCTTTTACAAAAGATAGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985802 22 - 2193130 TTTCTTTTACAAAAGATAGTCA i nomLeu3.chrUn_GL397460_1 M 182 C 0 s rheMac8.chr16 30057249 22 - 77216781 TTTCTTTTACAAAAGATAGACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969862 22 - 80997621 TTTCTTTTACAAAAGATAGACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2026104 22 + 10377808 TTTCTTTTACAAAAGATAGACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1913184 22 - 8458610 TTTCTTTTACAAAAGATAGACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64868971 22 + 75148670 TTTCTTTTACAAAAGATAGACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098504 22 + 4244037 TTTCTTTTACAAAAGATAGACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120663 22 + 4569836 TTTCTTTTACAAAAGATAGACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46085080 22 - 159171411 TTTTTGTTTCAAAAGGTAGTTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1803983 19 + 3513951 TTTTCGTTTCAAAAGATAG--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852903 22 + 1920343 TTTTTTTTTCAAAAGATAGTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967619 22 - 7032639 TTTTTGTTTCAAAAGATAGTCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892695 22 - 65901067 TTTCTGTTCCGAAAGATAGTCA i micMur3.chr16 C 0 I 118 s proCoq1.NW_012135969v1 2979502 22 + 8555354 TTTCTGTTCCAAAAGATAGTCA i proCoq1.NW_012135969v1 C 0 I 110 s mm10.chr11 22057873 22 - 122082543 TTTCTATCCTGAAAGATAGTGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21399340 22 + 61074082 TTTCTGTCTCAAAAGATACTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380376 22 - 852752 TTTCTGTTTCAAAAGGCACTCA i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22691399 97421 + 28711273 I a score=2896371.000000 s hg38.chr17_GL383564v2_alt 75682 282 + 133151 TGGGACTTGACTCCTTCCTCCAGTAGAGATTTTTTGGATGTTGAT-GGCCAAATAAATCTTTCTGTCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAATGAAACTGTAACAATGATCACTT---------------tttctgatttaaacagaactttcaaatccaccgtttcattaattcttgttagaatcatctgaggcaggcagagtgggaatcattatcaccttcttatagatgagCATT----TGAGTGTCAATAGGGTTGATGA-TCAATAACTAAC--Agtacagcagtt-----gccagc s panTro5.chr17 16262283 282 + 83181570 TGGGACTTGACTCCTTCCTCCAGTAGAGATTTTTTGGATGTTGAT-GGCCAAATAAATCTTTCTGTCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAATGAAACTGTAACAATGATCACTT---------------TTTCTGATTTAAACAGAACTTTCAAATCCACCGTTTCATTAATTCTTGTTAGAATCATCTGAGGCAGGCAGAGTGGGAATCATTATCACCTTCTTATAGATGAGCATT----TGAGTGTCAATAGGGATGATGA-TCAATAACTAAC--Agtacagcagtt-----gccagc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16169741 282 + 83442489 TGGGACTTGACTCCTTCCTCCAGTAGAGATTTTTTGGATGTTGAT-GGCCAAATAAATCTTTCTGTCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAATGAAACTGTAACAATGATCACTT---------------TTTCTGATTTAAACAGAACTTTCAAATCCACCGTTTCATTAATTCTTGTTAGAATCATCTGAGGCAGGCAGAGTGGGAATCATTATCACCTTCTTATAGATGAGCATT----TGAGTGTCAATAGGGATGatga-tcaataactaac--agtacagcagtt-----gccagc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4004800 282 + 4267968 TGGGACTTGACTCCTTCCTCCAGTAGAGATTTTTTGGATGTTGAT-GGCCAAATAAATCTTTCTGTCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAATGAAACTGTAACAATGATCACTT---------------tttctgatttaaacagaactttcaaatccaccgtttcattaattcttgttagaatcatctgaggcaggcagagtgggaatcattatcaccttcttatagatgagCATT----TGAGTGTCAATAGGGATGATGA-TCAATAACTAAT--Agtacagcagtt-----gccagc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1985824 282 - 2193130 TGGGACTTGACTCCTTCCTCTAGTAGAGATTTTTTGGATGCTAAT-GGGTAAATAAATCTTTCTGTCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAATGAAACTGTAACAATGatcgctt---------------tttctgatttaaacagaactttcaaatccaccgtttcgttaattcttgatagaatcatctgaggcagtcagagtgggaatcattatcaccttcttagagatgagCATT----TGAGTGTCAGTAGGGATGatga-tcaataactaac--agtacggcagtt-----gccagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30057271 281 - 77216781 TGGGACTTGACTGCTTCCTCCAGCAGAGATTTTTTGGATGCTGAT-GGGCAAATAAATCTTTCTATCTTCAAGACTGTCTTGTCACCACAAAAAGGAAAACAAAACTGTAACAATGATCACTT---------------TTTCTGATTTAAATGGAACTTTCAAATCCTCCATTTCATTAATTCTTGTTAGAATCATCTGAGGCA-GCAGAATGGGACTCATTATCACCATCTTATAGATGAGCATT----TGAGTGTCAATAGGGatgatga-tcaatcactatc--aatacggcaatt-----gccagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27969884 281 - 80997621 TGGGACTTGACTGCTTCCTCCAGCAGAGATTTTTTGGATGCTGAT-GGGCAAATAAATCTTTCTATCTTCAAGACTGTCTTGTCACCACAAAAAGGAAAACAAAACTGTAACAATGATCACTT---------------tttctgatttaaatggaactttcaaatcctccatttcattaattcttgttagaatcatctgaggca-gcagaatgggactcactatcaccatcttatagatgagCATT----TGAGTGTCAATAGGGATGATGA-TCAATCACTATC--AATACGGCAATT-----GCCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2026126 281 + 10377808 TGGGACTTGACTGCTTCCTCCAGCAGAGATTTTTTGGATGCTGAT-GGGCAAATAAATCTTTCTATCTTCAAGACTGTCTTGTCACCACAAAAAGGAAAACAAAACTGTAACAATGATCACTT---------------TTTCTGATTTAAATGGAACTTTCAAATCCTCCATTTCATTAATTCTTGTTAGAATCATCTGAGGCA-GCAGAATGGGACTCATTATCACCATCTTATAGATGAGCATT----TGAGTGTCAATAGGGATGATGA-TCAATCACTATC--AATACGGCAATT-----GCCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1913206 282 - 8458610 TGGGACTTGACTGCTTCCTCCAGCAGAGATTTTTTGGATGCTGAT-GGGCAAATCAATCTTTCTATCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAACAAAACTGTAACGATGATCACTT---------------tttctgatttaaatggaactttcaaatcttccattttattaattcttgttagaatcatctgaggcaggcagagtgggactcattatcaccatcttatagatgagCATT----TGAGTGTCAATAGGGATGATGA-TCAATCACTAAC--AATACGGCAATT-----GCCAGC i cerAty1.NW_012006043v1 C 0 I 299 s chlSab2.chr16 64868993 282 + 75148670 TGGGACTTGACTGCTTCCTCCAGCAGAGATTTTTTGGGTGCTGAT-GGGCAAATAAATCTTTCTATCTTCAGGACTGTCTTGTCACCACAAAAAGGAAAACAAAACTGTAACAATGATCACTT---------------tttctgatttaaatggaactttcaaatcctccatttcattgattcttgttagaatcatctgaggcaggcagagtgggactcattatcaccatcttatagatgagCATT----TGAGTGTCAATAGGGatgatga-tcaatcactaac--aatacggcaatt-----gccagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098526 282 + 4244037 TGGGACTTGACTGCTTCCTCCAGCAGAGATTTTTTGGATGCTGAT-GGGCAAATAAATCTTTCTATCTTCAAGACTGTCTTGTCACCACAAAAAGGAAAACAAAACTGTAACAATGATCACTT---------------tttctgatttaaatggaactttcaaatcctccatttcattaattcttgttagaatcatctgaggcaggcagagtgggactcattatcaccatcttatagatgagCATT----TGAGTGTCAATAGGGatgatga-tcaatcactaac--aatacggcaatt-----gccagc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120685 284 + 4569836 TGGGACTTGACTGCTTCTTCCAGCAGAGATTTTTTGGATGCTGAT-GGGCAAATAAATCTTTCTATCTTCAGGACTGTGTTGTCACCACAAAAAGGAAAACAAAACTGTAACAATGATCACTT---------------TCTCTGAtttaaatggaactttcaaatcctccgtttcattaatttttgttagaatcatctgaggcaggcagagtgggactcattatcaccatcttatagatgagCATT----TGAGTGTCAATAGGGatgatga-tcaatcactaacagaatatggcaatt-----gccagt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46085102 282 - 159171411 ATGGACCTGACTGCGTCCTCCAGTAGAGATTTTTTGGATGCTGAT-GTGCAAATCAAGCTTTCTATCTTCAGGAGTGTCTTGTCACCACAAAAAAGAAAACAAAACTGTAACAATCATCACTc---------------tttctgatttaaacagaactttcaaattcactgtttcatttattcttgttagtatcatctgaggcaggcagcgtgggaatcattatcaccgtcttctagatgagCATT----TGAGTGTCAATAGGGATGACGA-TCAATAACTA--AGAGGatagcagtt-----gccagc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1804002 280 + 3513951 -TGGACCTGACTGCGTCCTCCAGTAGAGATTTTTTGGATGATGAT-GTGCAAATCAAGCTTTCTGTCTTCAGGAGTGTCTTGTTATCACAAAAAAGAAAACAAAACTGTAACAATCATCACTc---------------tttctgatttaaacagaactttcaaatccactgtttcattaattcttgttagtatcatctgaagcaggcagcgtgggaatc---atcaccgtcttctagatgagCATT----TGAGTGTCAACAGGGATGACGA-TCAATAACTAACAGAGGATCGCAGTT-----GCCAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1852925 259 + 1920343 GTGGACCTGACTGCTTCCTCCAGTAGAGATTTTTTGGATGCTGAT-GTGCAAATCAAGCTTTCTGTCTTTAGGAGTGTCTTGTCACCATAAAAAAGAAAACAAAACTGTAACAATCATCACTC---------------TTTCTGATTTAAACAGAACTTTCAAATCCACTGTTTCCTTAATTTTTGTTAGTGTCATT-------------------------ATCACCGTCTTCTAGATGAGCGTT----TGAGTGTCAATAGGGATGACGA-TCAATAACTAACAGAGGatagcagtt-----gccagc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967641 284 - 7032639 GTGGACCTGACTGTGTCCTCCAGTAGAGATTTTTTGGATGCTGAT-GTGCAAATCAAGCTTTCTGTCTTCAGGAGTGTCTTGTCACCACGAAAAAGAAAACAAAAATGTAACAGTCATCACTC---------------TTTCTGATTTAAGCAGAACTTTCAAATCCACTGTTTCATTAATTCTTGTTAGTATCAGCTGAGGCAGGCAGCGTGGGAATCATTATCACCGTCTTCTAGATGCGTATT----TGAGTGTCAATAGGGATGACGA-TCAATAACTAACAGGGGatagcagtt-----gccagg i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22057895 255 - 122082543 --CAAGGCGACTGTACTCCCTGATGGTGATTCTTTGGCTATAGG--GTGCA----GAACTTTATATCTTCATGGATGGATTCTGA-CATGGAAAGGAAACCATTGCTTCAA-----------------------------------TTAAACTAAAACTTTAGGTCCACTGTTATTTTGGCCCTTGTTAAAATCACTTGAGAGAAG--GAATTTGATCTAATATAGCTATCTCCTA---GTGCATT----TGAGCATCTCCCAGGAAGAGGACTCAGTAGGTAGT--AGATCATCAGGCTGAGGGACAGC i mm10.chr11 C 0 I 2 s canFam3.chr9 21399362 269 + 61074082 TGAGACCTGATTGTTTTCTCCAAATTATAAGCTTTTGGAGCTGAT-GGGTAAATAAAAC---CTACCTTCGCGGTTGGCCTGTCATAGCAAGAGGGAAAACAAAACTGTAAAAACCATCACAT---------------AT----ATTTGAGTAGTGCTTTAGGATGTGCTTTAGGATTGATCCTTGTTGGAATCATCTGATAGAGGCAGAATGGGGA-CAGTATAACTATCTTATAGATGAACATC----T--------ATAAAGAAGACAATTTGTTAGCTCATGGAGTACAGTACTT-----GTCACC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380398 286 - 852752 TGAGACTTGCCT-CTTTCTCCATTGATGGTCCTTTGGATGCTGATGGGGGAAATAAAGCTTAAATCCTTCAGAGTTGGCTTATCATGACCAAAGGGAAAAGGAGATCTtactgatcatcgtttatatttgaatagtgccttatgatttaactgaaatgtttggatccattgtttcattgatccttgctggagtcatctgaggctggcagagtgggcatcattcttaccatcttacagatg---gttggaatgaatatcaaaagagaaaatgcctccaaaacccat--agggt------------------ i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2979524 110 + 8555354 I e micMur3.chr16 35892717 118 - 65901067 I e otoGar3.GL873537 22691399 97421 + 28711273 I a score=2923807.000000 s hg38.chr17_GL383564v2_alt 75964 249 + 133151 gaacataatatttttatgaacacagtcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtctagggtcatacaaggaaggctgggattcCACCTTACATGTTCTTTGCTCATTTCTGCC-ACTGTATCAGAACTCTGTAGAAGGAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA s panTro5.chr17 16262565 249 + 83181570 gaacataatatttttatgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtctagggtcatacaaggaaggctgggattcCACCTTACATATTCTTTGCTCATTTCTGCC-ACTGTATCAGAACTCTGTAGAAGGAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16170023 249 + 83442489 gaacataatatttttatgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtctagggtcatacaaggaaggctgggattccaccttacatattctttgctcATTTCTGCC-ACTGTATCAGAACTCTGTAGAAGGAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4005082 249 + 4267968 gaacataatatttttatgaacacaatcttgtggaattttcgtaatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagcggaggcttagaaggaggaagtgactttcttgtgtgtctagggtcatagaaggaaggctgggattccaccttacatgttctttgctcATTTCTGCC-ACTGTATCAGAACTCTGTAGAAGGAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1986106 248 - 2193130 gaacataatatttttatgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtggg-aagctgaggcttagaaggaggaagtgactttcttgtgtgtctagggtcatagaaggaaggctaggattccaccttacatgttctttgctcATTTCTGCC-ACTGTATCAGAACTCTGTAGAAGGAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30057552 249 - 77216781 gaacataatatttttacgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtccagggtcatagaaggaaggctggcaTTCCACCTTACATGTTCTTTGCTCATTTCTGCC-ATTGTATCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27970165 249 - 80997621 GAACATAATATTtttacgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtccagggtcataGAAGGAAGGCTGGCATTCCACCTTACATGTTCTTTGCTCATTTCTGCC-ATTGTATCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGTTTCCTAGGACATCAGATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2026407 249 + 10377808 GAACATAATATTtttacgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtccagggtcataGAAGGAAGGCTGGCATTCCACCTTACATGTTCTTTGCTCATTTCTGCC-ATTGTATCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1913787 249 - 8458610 GAACGTAATATTtttacaaacacaatcttgtggaattttcataatcctatgtggttggtaccaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtccagggtcatagaaggaaggctggcaTTCCACCTTACATGTTCTTTACTCATTTCTGCC-ATTGTGTCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGCCTCCTAGGACATCAGAGA i cerAty1.NW_012006043v1 I 299 C 0 s chlSab2.chr16 64869275 249 + 75148670 gaacataatatttttacgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtccagggtcataGAAGGAAGGCTGGCATTCCACCTTACATGTTCTTTGCTCATTTCTGCC-ATTGTATCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2098808 249 + 4244037 gaacataatatttttacgaacacaatcttgtggaattttcataatcctgtgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtatccagggtcatagagGGAAGGCTGGCATTCCACCCTACATGTTCTTTGCTCATTTCTGCC-ATTGTATCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2120969 249 + 4569836 gaacataatatttttatgaacacaatcttgtggaatttccataatcctatgtggttggtactaccagtcctaccttacaggtgggaaagctgaggcttagaaggaggaagtgactttcttgtgtgtccagggtcatagaaggaaggctggcaTTCCACCTTACATGTTCTTTGCTCATTTCTGCC-ATTGTATCAGAACTCTGTAGAAGAAGTGATCCAAAC-AAGGC-ATGGCTTCCTAGGACATCAGAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46085384 249 - 159171411 gaacataatatttttatgaacacaatcttgtggagttttcataattctgtggaattggtactatcagtcctaccttacaggtggggaagctgaggcttagaaggaggaattgacttcc-tgtgtgtccagggtcatagaaagaaggctgggattcCACCTTGCATTTTCTTTGCTCATTTCTGCC-ACTGTATCTCAGCTCTGTAGAAGGAGTGATCCAAACTAAGGC-AGGGCTTCCTAGGACATCAGAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1804282 250 + 3513951 GAACATAATATTTTTATGAACACAGTCTTGTGGGGTTTTCatagttctgtgggattcgtactatcagtcctaccttacaggtggggaagctgaggcttagaaggaggaattgacttccttgtgtgtccagggtcatagaaagaaggctgggattcCACCTTGCATGTTCTTTGCTCATTTCTACC-ACTGTATCTCAGCTCTGTAGAAGGAGTGATCCAAACTAAGGC-AGGGCTTCCTAGGACATCAGAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1853184 250 + 1920343 gaacataatatttttatgaacacaatcttgtggagttttcatagttctgtgggattggttctatcagtactagcttacaggtggggaagctgaggcttagaaggaggaattgacttccttgtgtgtccagggtcatagaaagaaggctgggattcCACCTTGCATGTTCTTTGCTCATTTCTGCC-ACTGTATCTCAGCTCTGTAGAAAGCATGATCCAAACTAAGGC-AGGGCTTCCTAGGACATCAGAGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6967925 250 - 7032639 gaacataatatttttatgaacacaatcttgtggagtttttataattctgtgggattggtactatcaggcctaccttacaggtggggaagctgaggcttagaaggaggaattgacttccttgtgtgtccagggtcatagaaagaaagctggcaTTCCACCTTGCATGTTctttgctcatttctgcc-actgtatgtcagctctgtagaagaagtgatccaaactaaggc-acggcttcctaggACATCAGAGA i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22058152 238 - 122082543 AGGCAGGCTATTTAGAAGGACA-ATTCTCTTCCGACGTTTATA--TCTGTACAGTATAAATCACCAATCCCATTTTCTAGGTTGG-AGGCAGAGGCCTA-ATTGTTGAAGTGATTCCTCTGTGTCCCCAGGGTTATACA--GAAGGCTCCTACTTCATTGCTAGTATTGTATACTCTCTTCTACC-ACTGTTTCTGAACTCTGTAGAGGGAATGAACCAAAT-AAGAT-ACG----CTTTAGAAAAAGGGGA i mm10.chr11 I 2 C 0 s canFam3.chr9 21399631 228 + 61074082 --TGACAGTattttcatgaacac--------------------gttctgtgtggtaggtattaccaatcctatcttacaggcaaagaggctgaggcttaggtgg-ggaagtgacttccccatgactccaggcttatagaatcagggctggaattcaaccttcggtctTTTTTGCTCTTTTCTGCCAACTATCTCAGAGTTTGATAAAAAGAGCAATCCAAAC-AAGGCTTTGGCTTCCCAAGATGTCAGAGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380684 238 - 852752 -----cagtaCTTTTGTGAACACAGTCTTGTGGATTCCTTACAATTCTGCGTGGAAGGTAGTGTCTGACCCACTTTGTGGGTGAATTGGCCCAGCTCTG---GGGATGACTGCCTTCCCCATGATTCCAGGCTTATAGGGGAAGGGCTGAGAGGCCACCTT---TGGTCTTTGCGCTTTTCTGCC-AACTTCTCTGAGGTTTGTAGAGAGAGAGATCTGAGC-AAGTC-TTGGAGTCCTAAGACATCTTGGA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2979524 110 + 8555354 I e micMur3.chr16 35892717 118 - 65901067 I e otoGar3.GL873537 22691399 97421 + 28711273 I a score=40008.000000 s hg38.chr17_GL383564v2_alt 76213 3 + 133151 ACG s panTro5.chr17 16262814 3 + 83181570 ACG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16170272 3 + 83442489 ACG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4005331 3 + 4267968 ACG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1986354 3 - 2193130 ACG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30057801 3 - 77216781 ACG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27970414 3 - 80997621 ACG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2026656 3 + 10377808 ACG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1914036 3 - 8458610 ACG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64869524 3 + 75148670 ACG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2099057 3 + 4244037 ACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2121218 3 + 4569836 ACG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46085633 3 - 159171411 ACG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1804532 3 + 3513951 ACG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1853434 3 + 1920343 ACG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6968175 3 - 7032639 ACG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22788820 3 + 28711273 ACA i otoGar3.GL873537 I 97421 C 0 s mm10.chr11 22058390 3 - 122082543 ATA i mm10.chr11 C 0 C 0 s canFam3.chr9 21399859 3 + 61074082 ACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380922 3 - 852752 ATG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2979524 110 + 8555354 I e micMur3.chr16 35892717 118 - 65901067 I a score=4801174.000000 s hg38.chr17_GL383564v2_alt 76216 306 + 133151 GGTTCTGCTTGTTTCTGTGTCTCTTTGGATTGAG--TCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTCTAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATGTGAAAAGCCCATTGGATCCTGTGTCACCAAT---------CCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCTTGCAACACCTTTGGGTACTAGATACCCTGGGGCCAGCAGAAGTATAGCATGAAGACAGAACTACCATCGGTGGGCCAGTTCTGCCTCTCTGACAACCATCAGCCAC-CGGACCCCACCC s panTro5.chr17 16262817 306 + 83181570 GGTTCTGCTTGTTTCTGTGTCTCTTTGGATTGAG--TCTCTCTTGTTTGAATCACCCTTCTCATGCTGACAGTCTAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATGTGAAAAGCCCATTGGATCCTGTGTCACCAAT---------CCT---------TGTGGTCCTCGTTCCTGCTGTGGGCCTTGCAACACCTTTGGGTACTAGATACCCTGGGGCCAGCAGAAGTATAGCATGAAGACAGAACTACCATCGGTGGGCCAGTTCTGCCTCTCTGACAACCATCAGCCAC-CGGACCCCACCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16170275 306 + 83442489 GGTTCTGCTTGTTTCTGTGTCTCTTTGGATTGAG--TCTCTCTTGTTTGAATCACCCTTCTCATGCTGACAGTCTAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATGTGAAAAGCCCATTGGATCCTGTGTCACCAAT---------CCT---------TGCGGTCCTCGTTCCCGCTGTGGGCCTTGCAACACCTTTGGGTACTAGATACCCTGGGGCCAGCAGAAGTATAGCATGAAGACAGAACTACCATCGGTGGGCCAGTTCTGCCTCTCTGACAACCATCAGCCAC-CGGACCCCACCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4005334 306 + 4267968 GGTTCTGCTTGTTTCTGTGTCTCTTTGGATTGAG--TCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTCTAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCTACCACCAATGCATGTGAAAAACCCATTGGATCCTGTGTCACCAAT---------CTT---------TGTGGTCCTCGTTCCCGCTGTGGGCCTTGCAACACCTTTGGGTACTAGATACCCTGGGGCCAGCAGAAGTATAGCATGAATACAGAACTACCATTGGTGGGCCAGTTCTGCCTCTCTGACAACCATCAGCCAC-TGGACCCCACCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1986357 306 - 2193130 GGTTCTGCTTGTTTCTGTGTCTCTTTGGGTTGAG--TCTCCTTTGTTTGAATCACCATTCTCATGCTGACAGTCTAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGTGCCACCACCAATGCATGTGAAAAGCCCATTGGATCCAGTGTCACCAAT---------CTT---------TGTGTTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTACTAGATACCCTGGGGCCAGCAGAAGTATAGCATGAAGACAGAACTACCATTGGTGGGCCAGTTCCGCCTCTCTGACAACCATCAGCCAC-CGGACCCCACCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30057804 306 - 77216781 ATTTCTGCTTGTTTCTATGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATGCTTCTGCATCCCAGGTTGCCCTCCAACCCCTGCGCCACCACCAATGCATATGAAAAGTCCATTGGATCCTGTGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAACTACCATCGATGGGCCAGTTCCACATCTCCGACCACCATCAGCCAC-CAGACCCCACCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27970417 306 - 80997621 ATTTCTGCTTGTTTCTATGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATGCTTCTGCATCCCAGGTTGCCCTCCAACCCCTGCGCCACCACCAATGCATATGAAAAGTCCATTGGATCCTGTGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAACTACCATCGATGGGCCAGTTCCACATCTCCGACAACCATCAGTCAC-CAGACCCCACCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2026659 306 + 10377808 ATTTCTGCTTGTTTCTATGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATGCTTCTGCATCCCAGGTTGCCCTCCAACCCCTGCGCCACTACCAATGCATATGAAAAGTCCATTGGATCCTGTGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAACTACCATCGATGGGCCAGTTCCACATCTCCGACAACCATCAGCCAC-CAGACCCCACCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1914039 306 - 8458610 ATTTCTGCTTGTTTCTATGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATATGAAAAGTCCATTGGATCCTGCGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAATTACCATTGATGGGCCAGTTCCACATCTCCGACAACCATCAGCCAC-CAGACCCCACCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64869527 306 + 75148670 ATTTCTGCTTGTTTCTATGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATTCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATATGAAAAGTCCATTGGATCCTGCGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGATGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAACTACCATCGATGGGTCAGTTCCACATCTCTGACAACCATCAGCCAC-CAGACCCCACCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2099060 306 + 4244037 ATTTCTGCTTGTTTCTATGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATATGAAAAGTCCATTGGATCCTGCGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAACTACCATCGATGGGCCAGTTCCACATCTCTGACAACCATCAGCCAG-CAGACCCCACCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2121221 306 + 4569836 ATTTCTGCTTGTTTCTTTGTCTCTTTGGGTTGAG--CCTCCCTTGTTTGAATCACCCTTCTCATGCTGACAGTATAATGCTTCTGCATCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATATGAAAAGTCCACTGGATCCTGCGTCACCAAT---------GCT---------TGTGGTCCTCGTTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACTCTGGGGCCAGCAGGAGTATAGCATGAAGACAGAACTACCATCGATGGGCCAGTTCCACATCTCTGACAAACATCAGCCAG-CAGACCCCACCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46085636 306 - 159171411 GGTTCTGCTTGTTTCCGTGTCTCCCTGGGTTGAG--CCTCCCTTCTTTTAATCACAGTTCTCATGCTGACAGTCTAATGCTTCTATATCCCAGGCTGCCCTCTAACCCCTGCACCACCACCAATGCATGTGAAAAGCCTATTGGATCCTGTGTCACCAAT---------TCT---------TGTTGTCCTCGGTCCCGCTGTGGGCCCTGCAACACCTTTGGGTGCTAGATACCCTGGAACCAGCAGGAGTACAGCATGAAGACACAACTACCATCTACTGGCCAGTTCTGCCTCTCTGACAACCATTAGCCAC-TGGACCTCACGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1804535 306 + 3513951 GGTTCTGCTTGTTTCCGAGTCTCCCCGGGTTGAG--CCTCCCTTGTTTTAATAACAGTTCTCATGCTGACAGTCTAATGCTTCCATATCCCAGGTTGCCCTCCAACCCCTGCGCCACCACCAATGCATGTGAAAAGCCTATTGGATCCTGCGTCACCAAT---------TCT---------TGTTGTCCTCGGTCCCGCTGTGGGCCCTGCAACACGTTTGGGTGCTAGATACCCTGGGGCCAGCAGGAGTACAGCATGAAGACACAACTACCATTGGCCGGTCGGTTCTGCCTCTCTGACAACCATCAGCCAC-TGGACCTCACCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1853437 306 + 1920343 GGTTCTGCTTGTTTCCGTGTCTCCCCGGGTTGAG--CCTCCCTTGTTTTAATCACAGTTCTCATGCTGACAGTCTAATGCTTCCGTATCCCAGGCTGCCCTCCAACCCCTGTGCCACCACTAATGCATGTGAAAAGCCTATTGGATCCTGCGTCAGCAAT---------TCT---------TGTTGTCCTCGGTCCCGCTGCGGGCCCTGCAACACCTTTGGGTGCTAGATACCCTGGGACCAGCAGGAGTACAGCATGAAGACACAACTACGGTTGGCCGGTCAGTTCTGCCTCTCTGATGACCATCAGCCAC-TGGACCGCACCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6968178 306 - 7032639 GGTTCTGCTTGTTTCCGTGTCTCCCTGGGTTGAG--CCTCCCTTGTTTTAATCACAGTTCTCATGCTGACAGTCTAATGCTTCTGTTTCCCAGGCTGCCCTCCAACCCCTGCGCCACCACCAATGCATGTGAAAAGCCTATTGGATCCTGCGTCACCAAT---------TCT---------TGTTGTCCTCGGTCCCGCTGTGGGCCCTGCAACACATTTGGGTGCTAGATACCCTGGGGCCAGCAGGAGTACAGCATGAAGACACAACTACCATTGGCCGGTCAGTTCTGCCTCTCTGACAACCATCAGCCAC-TGGACCTCACCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35892835 299 - 65901067 GGTTCTGCTTGTTCCTGTGTCTCCTTGGGTTGAG--CCCTTATTTTTGAAATTCCCCTCCTTATGCTGATGATCTAATGATTCTGTGTCCCAGGCTGCCCTGCAACCCCTGCGCCACAACCAATGCGTGCGACAAGCCCATCGGACCCTGCGTCTCCAAT---------CCT---------TGTGGGCCTCGTGCCCGCTGCGGGCCCTGCAACAGCTTTGTGTGCTAGATACCCCGGGGCCAGCAGGAGGATGGCATGAAGGCAGAAACACCATCCAGGGACCTGCTCTGCCTCTCTGACGGCCAC--------AGAACCCCACCC i micMur3.chr16 I 118 I 93 s proCoq1.NW_012135969v1 2979634 300 + 8555354 GGTTCTACTTGTTTCTGTGTCTCCTTGGGTTGAGC-CCCCTACTTTTAAAATCACCCTCCTTGTGTTGATGATCTAATGATTCTGTGTCCCAGGCTGCCCTGCAACCCCTGCGCCACAACCAACGCGTGTGACAAGCCCATCGGACCCTGCGTCACCAAT---------CCT---------TGTGGGCCTCGCTCTCGCTGTGGGCCCTGCAACAACTTCGTGTGCTAGATACCCCAGGGCCAGCAGGAGGGTGGCATGAAGGCAGAAACACCATCGACGGACCTGCTCGGCCTCTCTGACGGCCAC--------AGAACCCCACCC i proCoq1.NW_012135969v1 I 110 C 0 s otoGar3.GL873537 22788823 306 + 28711273 GGTTCTGCTTATCTCTGTGTCTCTTTGGGTTGAGG-CCCCTCCTTTAAAAATCACCCTTCTTGTGCTGACAACCTAATGATTCTGTGTCCCAGGCTGCCCTGCAACCCCTGTGCCACAACCAATGCATGTGACAAGCCTATCGGACCCTGCGTCACCAAT---------CCC---------TGTGGGCCTCGTCCTCGCTGTGGGCCCTGCAACACCTTTGTGTGCTAGATCCCCGTCAGCCAGCAGGAGGACAGCACGAAGGCAGATATACCGTCAGCGGGCCCGCTCTGCCTCTCTGATAGCCACCAGCTG--CGGACCCCACCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22058393 269 - 122082543 --GGCTTCTTGTTTTTAGGCT-----------AT--TCTGCTTTCTCAGAACTTACTTTCTCATGCTGAC--TCTAACGATCCTGTGTCCTAGGCTGCCCTGCAACCCCTGTGCCACCACCAATGCCTGTGACAAGCCCATTGGACCCTGTGTCACAAAC---------CCT---------TGTGTCACACGCTCCCGATGTGGACCCTGCAATTCCTTTGGCTGCTAAACACCCCATGGCCAGCAGGAGGATTGCATAAAGACAGAAAGAGAGTCAGTGGATCAGCTCAGCCTCTTTGA-----------------------ACCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21399862 313 + 61074082 GTTTCTGCTTTTTC---TGTCTCCTTGGGTTGAGCTCTTCCCTTTTAAAAATTGTACCTCTCATGCTGACAAGCTATTAATTCTGTGTCCCAGGTTGCCTTGCAACCCCTGTGCCACGACCAACGCATGTGACAAGCCCATCGGACCCTGTGTCACCAATCCCTGTACCCCC---------TGTGGCCCACGCTCCCGCTGTGGGCCCTGCAACACCTTTGGATGCTAGATATCCCGGGACCAGCAAGAGGATTGCATGAAAACAGAAAGGCCATTGATGGACCAGTCCTGCTTCTCTGACAAGCATCAGCC-C-CAGAAGCTGCCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 380925 301 - 852752 GGCAGTGATTGTCCCCATGTCTCCTGGGGTTGAG--CAGCCTCCTTTTCTGTTACCCCTCTCATGCTCACCATCTCATGACTCTGT---CCAGGCTGCCTGGCAACCCCTGTGCCACGACCAACGCA------------AGCGGGCCCTGCCTCTCCAAT---------CCCTGCGCTCCATGTGTTCCACGTGCCCGCTTCGGGCCCTGCAGCACCTTTGGGTGCTAGCCACCCCACAGCCAACAGGGGGATTGGGTGAAGCCTGAAGAACTATTGATGGACCAGCTCTGCTTCTCTGACAACCATCAGCCATGGGGACCCTGCCC i dasNov3.JH570468 C 0 C 0 a score=1284443.000000 s hg38.chr17_GL383564v2_alt 76522 100 + 133151 CGAGGCATCACCACA--AA-TCATGGTC-TGGAAGGAGAACAAATGCCCAGCGTTTGGGTCTGACTCTGAGCCTAGGGCTACTTGATCCTCCTCACCCCAGGTC s panTro5.chr17 16263123 100 + 83181570 CGAGGCATCACCACA--AA-TCATGGTC-TGGAAGGAGAACAAATGCCCAGCGTTTGGGTCTGACTCTGAGCCTAGGGCTACTTGATCCTCCTCACCCCAGGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16170581 100 + 83442489 CGAGGCATCACCACA--AA-TCATGGTC-TGGAAGGAGAACAAATGCCCAGCGTTTGGGTCTGACTCTGAGCCTAGGGCTACTTGATCCTCCTCACCCCAGGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4005640 100 + 4267968 CGAGGCATCACCACA--AA-TCATGGTC-TGGAAGGAGAACAAATGCCCAGCGTTTGGGTCTGACTCTGAACCTAGGGCTACTTGATCCTCCTCACCCCAGGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1986663 100 - 2193130 CGAGGCATCACCACA--AA-TCATGGTC-TGGAAGGAGAACAAATGCCCACCGTTTGGGTCTGACTCTGAGCCTAGGCTGACTTGATCCTCCTCACCCCAGGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30058110 100 - 77216781 CAAGGCATCACCACA--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGACTCTGAACCTAGGCCCACTTGATCCTCCTCACCCCAAGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27970723 100 - 80997621 CGAGGCATCACCACC--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGACTCTGAACCTAGGCCCACTTGATCCTCCTCACCCCAAGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2026965 100 + 10377808 CGAGGCATCACCACA--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGACTCTGAACCTAGGCCCACTTGATCCTCCTCACCCCAAGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1914345 100 - 8458610 CGAGGCATCACCACA--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGACTCTGAACCTAGGCCCACTTGATCCTCCTCACCCCAAGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64869833 100 + 75148670 CGAGGCATCACCACA--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGACTCTGAACCTAAGCCCACTTGATCCTCCTCATCCCAAGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2099366 100 + 4244037 CAAGGCATCACCACA--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGATTCTGAACCTAGGCCCACTTGATCCTCCTCACCCCAAGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2121527 100 + 4569836 CGAGGACTCACCACA--AA-TTATGGTC-TGGAAGGAGAACAAATGCTCAGCGTTTGGGTCTGACTCTGAACCTAGGCCCACTTGATCCTTCTCAACCCAAGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46085942 100 - 159171411 TGAGGCGTCACCATC--AA-TCAGGGTC-TGGAAGGAGAACAAATGCCCCGCATTTGGGCCTGACTCTGAGCGGAGGCCCAGCTGATCCTCCTTACCCCAGGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1804841 100 + 3513951 TGAGGCGTCACCATC--AA-TCAGGGTC-TGGAAGGAGAACAAATGCCCTGCATTTGGGCCTGACTCTGAGCTGAGGCCCAGCTGATCCTCCTTACCCCAGGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1853743 101 + 1920343 TGAGGCATCATCATC--AATTCAGGGTC-TGGAGGGAGAACAAATGCCCTGCATTTGGGCCTGACTCTGAGTGGAGGCCCAGCTGATCCTCCTTACCCCAGGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6968484 100 - 7032639 TGAGGCGTCACCATC--AA-TCAGGGTC-TGCAAGGAGAACAAATGCCCCGCATTTGGGCCTGACTCTGAGCAGAGGCCCAGCTGATCCTCCTTACCCCAGGCC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2979934 95 + 8555354 -----CATCCCTATG--GG-TCATGGCC-TGGAAGGAGAACAAACACCCAGTGTCACGGCCTGGCTCCGAGCCCAGGCCCATCTGATCCTCTCCAGCCAAGGCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22789129 92 + 28711273 CAAGGCATC--------AA-TCCTGGTC-CGGAAGGAGAATTGATGGCCAGCATGGTGGCCTGGCTCTCAGCCCTGGCCCACCTGATCCTCTACAGCCAAGG-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22058662 100 - 122082543 ACATCCAGCACCGTAGGGA-TCATGGTC-TGGAAGAAGAACACAGGCCTAGTGCTGTGGTCTGGGTCTGAGTCCAGGCCCACTGGACCATCTTCATCCAGGG-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21400175 96 + 61074082 -CAGGCATCTCCATA--AA-TCATGGTC-TGGAAGGAGAGCAAATGCCCAG--GTGTGGCCTGGCTCTGAGCCTA-GCCCACCAGATCCCCTTTATTCAAGGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 381226 99 - 852752 CAAAGCCTCTCCATC--AA-CCACAATCATGGAGGGGGAATAGCTGCCCAGGGCTGTGTCCTGGCTCTGAGCACAGGCCC--CTGCTCCTCTTCCTTCTAGACC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35893134 93 - 65901067 I a score=7987251.000000 s hg38.chr17_GL383564v2_alt 76622 525 + 133151 CCTCTCCTGTAGTCA---GTCTGAGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGAGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTAGGATCACTAGGACAAGAGGCCTCGTCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGTGAGCATCTCTAGACAGTTCCACT-CATTCTTT-T--AAGTCCCTAGCAG------GGatgacagaagttaatatttattgaacacctaccaaatgccaggaattg-----tgctaCTAATTTTTTCTCTTCC s panTro5.chr17 16263223 525 + 83181570 CCTCACCTGTAGTCA---GTCTGAGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGAGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTAGGATCACTAGGACAAGAGGCCTCATCTGAATATGGTAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGTGAGCATCTCTAGACAGTTCCACT-CATTCTTT-T--AAGTCCCTAGCAG------GGatgacagaagttaatatttattgaacacctaccaaatgccaggaattg-----tgctaCTAATTTTTTCTCTTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16170681 525 + 83442489 CCTCTCCTGTAGTCA---GTCTGAGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGAGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTAGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGTGAGCATCTCTAGACAGTTCCACT-CATTCTTT-T--AAGTCCCTAGCAG------GGatgacagaagttaatatttattgaacacctaccaaatgccaggaattg-----tgctaCTAATTTTTTCTCTTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4005740 526 + 4267968 CCTCTCCTGTAGTCA---GTTTGAGTTCTGATGGTC--AGAGGTTTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCTC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGAGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGGCAGC--ATAAAACAAGTAGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGTGAGCATCTCTAGACAGTTCCACT-CATTCTTT-T--AAGTCCCTACCAG------GGatgacagaagttaatatttattgaacacgtaccaaatgccaggaatcg-----tgctaCTAATTTTTTCTCTTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1986763 525 - 2193130 CCTCTCCTGTAGTCA---GTTTGAGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATATGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGAGAACTTTATAGGTTAATCACGTCCTAAAAGGTCTTCATCACC-TTCATTAAGATTCATTAAGCACAGTGAGTCCCATCATCC----ACTTAGGCCAGC--ATAAAACAAGTGGAATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACAGTGAGCATCTCTAGACAGTTCCACT-CTTTCTTT-T--AAGTCCCTACCAG------GGatgacagaagttaatatttattgaacacctaccaaatgccaggaattg-----tgctaCTAATTTTTTCTCTTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30058210 526 - 77216781 CTTCTCCTGTACTCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCACGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCACT-CTTTCTTT-T--AAGTCCCTACCAG-----AGGatgacagaagttaatatttattgaacacctaccaaataccaggaattg-----tgctaCTAATTTTTTCTCTTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27970823 526 - 80997621 CTTCTCCTGTACTCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCACT-CTTTCTTT-T--AAGTCCCTACCAG-----AGGatgacagaagttaatatttattgaacacctaccaaataccaggaattg-----tgctaCTAATTTTTTCTCTTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2027065 526 + 10377808 CTTCTCCTGTACTCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGACAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCACT-CTTTCTTT-T--AAGTCCCTACCAG-----AGGATGACAGAAGTTAATATTTATTGAACACCTACCAAATACCAGGAATTA-----TGCTACTAATTTTTTCTCTTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1914445 526 - 8458610 CTTCTCCTGTACGCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCACT-CTTTCTTT-T--AAGTCCTTACCAG-----AGGatgacagaagttaatatttattgaacacctaccaaacaccaggaattg-----tgctaCTAATTTTTTCTCTTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64869933 526 + 75148670 CTTCTCCTGTACTCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCGTACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCCTAAAAGATCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATTC----ACTTAGGCCAGC--ATAAAACAAGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCATT-CTTTCTTT-T--AAGTCCCTACCAG-----AGGatgacagaagttaatatttattgaacacctaccaaataccaggaattg-----tgctaCTAATTTTTTCTCTTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2099466 526 + 4244037 CTTCTCCTGTACTCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTGTGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCTTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAACAAGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCACT-CTTTCTTT-T--AAGTCCCTACCAG-----AGGatgacagaagttaatatttattgaacacctaccaaataccaggaattg-----tgctaCTAATTTTTTCTCTTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2121627 525 + 4569836 CTTCTCCTGTACTCA---GTTTGGGTTCTGATGGTC--AGAGG-TTGGAGCTGTGACAGTGGCATACGAGGTGTTTTGT---TCTCTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AAATCGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTATTTTCAAAGTGTTGACTC--TCTATGTGCTTCTTATAAAGCCACTTGAAAGCAGAAGGTGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCGTCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCCAGCATCC----ACTTAGGCCAGC--ATAAAAC-AGTGGGATCACTAGGACAAGAGGCCTCATCTGAATATGATAAACATATTTCTCATGGGACCTTACTCAGTAAAATGCAACGGATAGCATCTCTAGACAGTTCCACT-CTTTCTTT-C--AAGTCCCTACCAG-----AGGatgacagaagttaatatttactgaacacctaccaaataccaggaattg-----tgctaCTAATTTTTTCTCTTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46086042 515 - 159171411 TCTCTCCTGTAGTCA---GTTTGTGTTCTGATGGTCTGAGAGT-TTGGAGCTGTCACAGTGTCATACGAGGTTTTTTGT---TCTTTCTGCTGCTTCTA-CCTTTATTTTGGTTCCCC------------AAATTGC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGAAATGATTCTCGTTTGTATTCATTCTTTTTAAAGTGTTGACTC--TGTGTGTGTGTCTTATAAGGCCACTTGAAAGCAGAAGGAGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCTAGCATCC----ACTCAGGCCAGC--GTAAAACAGGTGGGTTCACTAAGACAAGAGGCCTCATCTGAATATGATAAATGTATTTCTCCTGGGACCTTACTTAGTAAAGTGCAACGGTTAACATCTCCAGGCACTTCCACT-TTTTCTTT-G--AAGTCCCTACCAG-----AGGatgacagaagttaacatttattgaacacctaccaaataccaggaattg-----tactaCTA-------------C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1804941 514 + 3513951 TCTCTCCTTTAGTCA---GTCTGTGTTCTGATGGTCTGAGAGT-TTGGAGCTGTCACAGTGTCATACGAGGTGCTTTGT---TCTTTCTGCTGCTTCTA-CCTTTATTGCAGTTCCCC------------AACTCGT---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTAACTC--TCTGTGTGTGTCTTCTAAGGCCACTTGAGAGCAGAAGGAGGACTTTATAGGTTAATCATCTCCTAAAAGGTCTTCATCACC-TTCATTAACATTCATTAAGCACAGTGAGTCCTGGCATCC----ACTCAGGCCAGC--GTAAAACAGGTGGGTTCACTAAGACCAGAGGCCTCATCTGAATATGAT-AACGTATTTCTCCTGGGAGCTTACTTAGTAAAATGCAACGGTTAACATCCCCAGGCAGTTCTACT-TTTTCTTT-G--AAGTCCCTACCAG-----AGCatgacagaagttaacatttattgaacacctaccaaataccaggaattg-----tactaCTA-------------C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1853844 514 + 1920343 TCTCTCCTGTAGTCA---GTTTGTGTTCTGATGGTCTGAGAGT-TTGGAGCTGTCACAGTGCCATACGAGGTGTTTTGT---TCTTTCTGCTG-TTCTA-CGTTTATTGCAGTTCCCC------------AAATCAC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGTGTCTTATAAGGCCACTTGAAAGAAGAAGGAGGACTTTATAGGTTAATTATCTCCTAAAAGGTCTTCATCACC-TTTATTAACATTCATTAAGCACAGTGAGTCCTAGCATCC----ACTCAGGCCAGT--GTAAAACAGGTGGGTTCACTAAGACGAGAGGCCTCATCTGAATATGATAAACGTATTTCTCCTGGGACCTTACTTAGTAAAATGCAACGGTTAACATCTCCAGGCAGTTCCACT-TTTTCTTT-G--AAGTCCCTACCAG-----AGGATGACAGAAGTTaacatttattgaacacctaccaaataccaggaattg-----tacgacta-------------c i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6968584 511 - 7032639 TCTCTCCTGAAGTCA---GTTTGTGTTCTGATGGTCTGAAAGT-CTGGAGCTGTCACAGTGTCACACGAGGCGTTTTGT---TCTTTCTGCTGCTTCTA-CCTTTATTGAAGTTCCCC------------AAATCAC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATGATTCTCATTTGTATTCATTCTTTTCAAAGTGTTGACTC--TCTGTGTGTGTCTTATAAGGCCACTTGAAAGCAGAAGGAGGACTTTATAGGTTAGTCATCTCCTAAAAGGTCTTCAGCAGC-TTCATTAACATTCATTAAGCACAGTGAGTCCTAGCATCC----ACTCAGGCCAGC--GTAAAACAGGTGGGTTCACTAAGACGAGAGGCCTCATCTGAATATGATAAACGTATTTCTCCTGGGAC----CTTAGTAAAATGCAACGGTTAACATCTCCAGGCAGTTCCACT-TTTTCTTT-G--AAGTCCCTACCAG-----AGGATGACAGAAGTTaacatttattgaacacctaccaaataccaggaattg-----tactacta-------------c i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35893227 507 - 65901067 CCTCTCTCGGAGTCA---GTCTGTGTTCTGATGGTCCGAGGGG-TTTGAGCTGTGAAGGTGTCGTACGAATTG---------------------------TCTTCCTTGCAGTTCCCC------------AAACCTC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATAATTCTCATTTGTATTCATTCTATTCAAAGTGTTCACTC--GGTGTGTGCTGCTTATAAAGCCACTTGAAAGCCCAA-GAGGACTTTATAGTTTAACCCTCTCCAAAATGGTCTTCATCACCATTCATTAACATTCATTAGGCAAGGTGAGCCCCAGCATCC----ACTCAGGTCAGCAGGTAAAACCAGCAGGATCCCTAGGGCAGGA-GCCTCATCTGAATATGATAAACACACTCGTTATGGGACC-TACTCAGTAAAACGCAACGGTTAGCATTTCTGGAAAGTTCCACT-TTTTCTTT-TCCAAGTCCCTACCCA-----AAGAGGACAGAAGCTAGTATTTACTGATCACCTACCAAGTACTAGGAACCC-----TGCTACTAATTTTTACTCTTAT i micMur3.chr16 I 93 C 0 s proCoq1.NW_012135969v1 2980029 525 + 8555354 --TCTCTCATAGTCA---GTCTGTGTTCTGATGGTCTGAGGGG-TTTGAGCTGTGAAGGTGTCATACGAGGTGTTTTGTAGATCTCTCTGCTGCGTCTA-TCTTCCTTGCAGTTCCCC------------AAACCTC---------CTAATAAAC-TTTCCTCTTGCAAAGCAGACATAATTCTCATTTGTATTCATTCTATTCAAAGTGTTCACTC--TGTGTGTGCTTCTTATAAAGCCACTTGAAAGCCTGA-GAGGATTTTATAGTTTAACCCTCTCCTAAAAGGTCTTCATCACCGTTCATTAACATTCGTTAAGCACAGTGAGCCTCAGCTTC--------CAGGTCAGC--GTAAAACCAGCAGGATCCCTAGGGCAGGA-GCCTCATCTGAATATGATAAACACACTCATTGTGGGGCC-TACTCAGTAAAATGCAACGGTTAGCATTTCTAGAAAGTTCCACT-TTTTCTTT-TCTAAGTCCCTACCCG-----AAGAGGACAGAAGCTaatatttactgatcacctaccaagtaccaggaaccg-----tgctaCTAATTTTTTCTCTTAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22789221 520 + 28711273 ----------AGTCA---GTCTGTGTTCTGATGGTCCGAGGCC-TTTGAGCTGTGAGGGTGTCATATGAGGTGTTTTGTGGGTCTCTCTGCTGCTGTTT-CTTTTCTTGTAGTTCCCC------------GAATCTC---------CTAATAAAC-TTTCCTCTTGCAAAGAAGACATAATTCTCATTTGTATTCATTCTTTTCAAAGTGTTCACTC--TGTGTTTGCTTCTTATGAAGCCACTTGAAAGCCCGA-GAGGACTTTATAGTTTAACCCTCTCCTAAAAGGTTGTCATCACCATTCATTAACCTTCATTAAGTACAGTGAGCCCCAGCTTCC----ACTCAGCTCAGC--ATAAAACCAGCAGGATCGCTAGGGCAACAGGCCTCATCTGAATATGATAA--ACATTCATCATGGGACC-TGCTCAGTAAAACGCAACGGTTAGCATCTCTAGAAAGTTCCACT-TTTTCTTT-TCCAAGTCCTTCCCAG-----AAAAGGatagaagatactatttactgatcacctactaagcaccaggaactg-----tgctaCTGATTTTTTCTCCTAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22058762 465 - 122082543 -CTTGTCCGTGACCACCGGCTTGTA-TCTGGTGGTCTGAGAGA-TCTGAGCTGTGAAGGGGCCACACGAGGTATTTTGTGGTTCTCACTGCTTCTTCTGCCCTTTCTTGCAGTTTTCC------------AAA-AAC---------CTAATAAAT-TTTCCTCTTGCAAA-CAGACATGAGTTTCACTTGTATCCATCTTTTTCAGAGTGTTTGTTC--TCTGTGGGACTCTTATGAAGAGACTTGAATGCAGAAGG-GGTCTTGTTAGCTTA-------------------TCGGTGTC-----CTAACATTCATTAGACACACTCAGTGCTAACATCC----TTGCAGGCTGGC--ACTAAAC--GGCAAAACATTTGGGCAAAAGGCCTCATGCAAATGGGATAGACACCTCCATTCCAGGGCAACACTTTCTCAATTTTTGTTATTTTCTTTTCTAA-----TTCACTGCATTCACA-T--AATTCACTACTTG----------------------CATCTTCTGAACTCCTAACAAGTGCCAGGGC----------CTCCTA-------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21400271 545 + 61074082 --GCTCTCTCTGTTA---TTCTGTGACCTGATGGTCTGATGGG-TCTGGGCTGAGAAGGTGTCATAGGAGATGTGTTGTGGTTCTCTCTGTTGCTTTGA-CCTTCCTCACAGGTCCCT------------AAATCCCTTTGTAAATCTAATAAAC-TTTCCTCTTGCAAAGCAGTGATGGTTCTCATTTGTATTCATTCTTTCCAAAGTGTTTACTC--TGTATGTGCTTCTTATAAAGCCACTTGAAAGCACAG-GAGGACTGTGTCA-TTAATCCTCTCCCCAGAGGGCTTCATCACCATTAATTAACATTCATTAGGTGCAGTGAG-CCTGGCGTCCATCTACTTGGGCCAGC--CAGGAACCCGTGGGACCACTAAGGTAAGAGGCCTCATCCAAATACGGTGA--ATATTCATTATGGGAGCTGACT-GGTACCAC---ACTATTAACATTTCTAGAAAGTTCCACT-TTTTCTTTCT--AAGTGCCTGCTAGATAGAAGAGGAACAGGAGCTAACATTTACTGAACACCAACTAAATACCAGGAGCTGTAGGATAGGACTTATtttctttctttc i canFam3.chr9 C 0 I 386 s dasNov3.JH570468 381325 544 - 852752 TTTCTCTCATAGTGG---TTCTGTGTCCTGATGGGTTTACAGG-CTTGAACTGGGAAGGCGTC-CCTGAGGTGCTTTGTCATTCTGTCTGATGCTTCGA-CCTTCCTTGCAGTCTCCCAAGTCCCTGTGTAAATCTC---------CTAATAAACTTTTCCTTGTGCAAAGCAGAGGTGATTCTCATTTGTATTCATTATTTTCCAAGTGTTTACTCCATGTGTGCGCTTCTCATAAAGTCACTTGAGAATGGAG-GAGGACTTGGCAGCTTAACCCTCTACTTGAAGGTTTTTATCACCATTAATTAACATCTATTAAGTGCAGTGAGCTCCAGCATCC----AGTTAGGCCAGG--GGAGAACCAGTGGGATCACTAGGTCAAGAGGCCTTGTCTGAATATGATAAAGACATTCAT-GTGGGACTTTGCTCAGTAAAATACAATGGTTA-CATTTCTAGAATGTTCTACC-TTTTCTCT-TCCAAGTCCCTATAAG----AAGAGGGACAGGGCCTAACCTTTATGGAATGCCTACCGAGTACCAGAAAATG-----TGCTAGTGATGTTTTCTCTC-- i dasNov3.JH570468 C 0 C 0 a score=482724.000000 s hg38.chr17_GL383564v2_alt 77147 45 + 133151 T----CACAG----------------------------------TGAGGAAGA-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC s panTro5.chr17 16263748 45 + 83181570 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171206 45 + 83442489 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006266 45 + 4267968 T----CATAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1987288 45 - 2193130 T----CACAT----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30058736 45 - 77216781 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971349 45 - 80997621 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2027591 45 + 10377808 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1914971 45 - 8458610 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64870459 45 + 75148670 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2099992 45 + 4244037 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122152 45 + 4569836 T----CACAG----------------------------------TGAGGAAGG-------------------------ATCA---------------ATGGCAGG-----ACTGAACCCAGAGTTCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46086557 45 - 159171411 T----CACAG----------------------------------TGGAGAAGG-------------------------AGCA---------------ATGGGAGG-----ACTGAATCCAGAGTTCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1805455 44 + 3513951 T----CACAG----------------------------------TGGGGAAGG-------------------------AGAA---------------ATGGGAGG-----ACCGAATCCAGAGTTCA- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1854358 45 + 1920343 t----cacag----------------------------------tggggaagg-------------------------agca---------------atgGCAGG-----ACTGAATCCAGAGTTCAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969095 45 - 7032639 t----cacag----------------------------------tggggaaGG-------------------------AGCA---------------ATGGGAGG-----ACTGAATCCAGAGTTCAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35893734 48 - 65901067 TAATATATAG----------------------------------TGAGGAAGT-------------------------AGCA---------------ATGACAGG-----GCTGAATCCAGAGTTCA- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2980554 49 + 8555354 TAATACATAA----------------------------------TGAGGAAGG-------------------------AGCA---------------GTGACAGG-----GCTGAACCCAGAGTTCAC i proCoq1.NW_012135969v1 C 0 I 6281 s otoGar3.GL873537 22789741 124 + 28711273 --ATACGAAGTCTGGTAATCAAGTTTGTGAACTGCCCAAACAACTCAGGAAGGTTTCGTAAGTGTAGCTGTGTGGATAGGCACGCTCCCGTTGACGTGTGGCAGGGTCTTGCTGCAT--GGCGTTCAT i otoGar3.GL873537 C 0 I 12 s mm10.chr11 22059227 44 - 122082543 -----CACAT----------------------------------TCAGGAAGG-------------------------AGCA---------------AGGATAAG-----ATAGAATCCAGAGTTTGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21401202 27 + 61074082 -------------------------------------------------------------------------------TCA-----------------CACAGT-----AAGGAGCTCAGAGGTCAT i canFam3.chr9 I 386 C 0 s dasNov3.JH570468 381869 33 - 852752 ----CCACAG----------------------------------TGAGCAAGT-------------------------TGCA---------------ACAATAGA-----GCTCAC------------ i dasNov3.JH570468 C 0 C 0 a score=999336.000000 s hg38.chr17_GL383564v2_alt 77192 92 + 133151 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------tgaggtgtgattatgagaggacaaaattgatttcaaacaagcacc--cagagcttatacatcc-------------TCC----------------TGGGGAG s panTro5.chr17 16263793 92 + 83181570 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------tgaggtgtggttatgagaggacaaaattgatttcaaacaagcacc--cagagcttatacatcc-------------tcc----------------tggggag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171251 92 + 83442489 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------tgaggtgtggttatgagaggacaaaattgatttcaaacaagcacc--cagagcttatacatcc-------------tcc----------------tggggag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006311 92 + 4267968 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------tgaggtgtgattatgagaggacaaaattgatttcaaacaagcacc--cagagcttatacatcc-------------TCC----------------TGGGGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1987333 94 - 2193130 TCTCTGTGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------tgaggtgtgattatgagaggacaaaactgatttcaagcaagcacc--cagagcttatacatcc-------------TCC----------------TGGGGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30058781 92 - 77216781 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTAcacg-----------------------------------------------------------------------------------------------------taaggtgtgactatgagaggataaaactgatttcaaacaagcacc--cagagtttatacatcc-------------tcc----------------tggggag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971394 92 - 80997621 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTAcacg-----------------------------------------------------------------------------------------------------taaggtgtgactatgagaggataaaactgatttcaaacaagcacc--cagagtttatacatcc-------------TCC----------------TGGGGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2027636 92 + 10377808 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTAcacg-----------------------------------------------------------------------------------------------------taaggtgtgactatgagaggataaaactgatttcaaacaagcacc--cagagtttatacatcc-------------tcc----------------tggggag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915016 92 - 8458610 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------taaggtttgactatgagaggataaaactgatttcaaacaagcacc--cagagcttatacatcc-------------tcc----------------tggggag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64870504 92 + 75148670 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------taaggtgtgactctgagaggataaaactgatttcaaacaagcacc--cagagcttatacatcc-------------TCC----------------TGGGGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100037 92 + 4244037 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------taaggtgtgactatgagaggataaaactgatttcaaacaagcacc--cagagcttatacatcc-------------TCC----------------TGGGGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122197 83 + 4569836 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACACA-----------------------------------------------------------------------------------------------------TAAGGTGTAACTATGAGAGGATAAAACTGATTTCAAACAAGC-----------TTATACATCC-------------TCC----------------TGGGGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46086602 88 - 159171411 TCTC--CGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACACC-----------------------------------------------------------------------------------------------------GGAGGTG----TATGAGAGAGTGAAACTAATTTCACACAAGCACC--CAGAGCTCATACATCC-------------TCC----------------TGGGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1805499 91 + 3513951 -TTC--CACTCGTT-----------------------------------------------------------------------------------------------------------------------------------------AGTTACACA-----------------------------------------------------------------------------------------------------Ggaggtgtggctatgagagagtgaaactaatttcacacaagcact--cagagctcatacatcc-------------TCC----------------TGGGGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1854403 92 + 1920343 TCTC--CGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACaca-----------------------------------------------------------------------------------------------------ggaggtgtggctataagacagtgaaactaatttcacacaagcacc--cagagctcatacatcc-------------TCC----------------TGGGGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969140 92 - 7032639 TCTC--TGCTTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACACA-----------------------------------------------------------------------------------------------------GGAGGTGTGGCTATGAGAGAGTGAAACTAATTTCACACAAGTACC--CAGAGCTCATACATCC-------------TCC----------------TGGGGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35893782 91 - 65901067 -CTC--TGCACGCC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACGTG-----------------------------------------------------------------------------------------------------TGAGGTGAGACTAGGAGAGAAGAAAACTGATTGCAGACGAACACC--CGGAGCTCACACACCC-------------TCC----------------TGGGGAG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22789877 330 + 28711273 tttt--tgtgtgccacacgatgacagctctggtggtcattccagaaaaagagttccaaagggtggtttgaaaggtggactaggcactggcatcagtgcacagctttcccaggggagtactttgaaggTGACCGTAGTCCTATTCAGGAGTGAGGTATGTAGTGCTTTCCGAGGATGAGTTCATGAACTTGTCAGATCTCACTGTGAGGAAGGAGCAATGACAAGGCTGAACCCAGGCCTCACTCTGCAAGTCAGTTACATGTGAAGTGTGGCTGGGAGAGAATAAAACTGAATCCAGACAAGCACC--TGGACCTTACACAACT-------------TCC----------------CTGGGAA i otoGar3.GL873537 I 12 C 0 s mm10.chr11 22059271 91 - 122082543 --TC--TCTCTGTT-----------------------------------------------------------------------------------------------------------------------------------------AGTTGTTTA-----------------------------------------------------------------------------------------------------TG-TGCATCAGTAAGAGAGAAGAAACCTGCTTTCAAACCAGCATTTGTGGATCTCTTCCATTC-------------TTC----------------CTAGgag i mm10.chr11 C 0 I 3800 s canFam3.chr9 21401229 104 + 61074082 TTTC--TGAGTGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTATACA-----------------------------------------------------------------------------------------------------TGAGGTATGCCTGTGAGGGAATGAACCCCATCCTTAACAAGCTCC--AGGATCTTATACAACC-------------TTC----AACACTATCACAAGGGGAG i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 381902 117 - 852752 CCTC------TGTC-----------------------------------------------------------------------------------------------------------------------------------------AGTTACCCA----------------------------------------------------------------------------------------------------TTAaggtatgactacaag-gaataaaactgatttcgaacaagccccc-cagagctgatacacccaaataaaggtatttcccatcaaaactgtcag-ctgggag i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I a score=2842569.000000 s hg38.chr17_GL383564v2_alt 77284 223 + 133151 ACacaatgctgtta-------------------------------------------------------------gtg-ctcaaaacatctctgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTCGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATATTA s panTro5.chr17 16263885 223 + 83181570 acacaatgctgtta-------------------------------------------------------------gtg-ctcaaaacatctctgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCTTCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTCGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATATTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171343 223 + 83442489 acacaatgctgtta-------------------------------------------------------------gtg-ctcaaaacatctctgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTCGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATATTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006403 222 + 4267968 ACacaatgctgtta-------------------------------------------------------------gtg-ctcaaaacatctctgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCAT-GGAACTACATATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATATTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1987427 223 - 2193130 ACacaatgctatta-------------------------------------------------------------gtg-ctcaaagcatctctgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---GTAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTGTCACTTGAATCGTT-----TAACTATGGGAACTACACATGAATTTCGGGGCCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGTATATTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30058873 223 - 77216781 acacaatgctatta-------------------------------------------------------------gtg-ctcaaagcatctttgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAGTCAAATTAGGATATTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971486 223 - 80997621 ACACAATGCTATTA-------------------------------------------------------------GTG-CTCAAAGCATCTTTGAAA--CTCTCCTTTGTGAAATACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAGTCAAATTAGGATATTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2027728 223 + 10377808 acacaatgctatta-------------------------------------------------------------gtg-ctcaaagcatctttgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACGTATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAGTCAAATTAGGATATTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915108 223 - 8458610 acacaatgctatta-------------------------------------------------------------gtg-ctcaaagcatctttgaaa--ctctcctttgtgaaatACTGAATA----AC--T----------CA---ATAC-TGAAAAGCACCACCTTGCCATCTTCTATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATGTTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64870596 223 + 75148670 ACACAATGCTGTTA-------------------------------------------------------------GTG-CTCAAAGCATCTTTGAAA--CTCTCCTTTGTGAAATACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCATTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATGTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100129 223 + 4244037 ACacaatgctatta-------------------------------------------------------------gtg-ctcaaagcatctttgaaa--ctctcctttgtgaaatACTGAGTA----AC--T----------CA---ATAC-TGAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAACACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTTAGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATGTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122280 223 + 4569836 ACACAATACTATTA-------------------------------------------------------------GTG-CTCAAAGCATCTTTGAAA--CTCTCCTTTGTGAAATACTGAATA----AC--T----------CA---ATAC-TAAAAAGCACCACCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTGAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCATGGGAACTACATATGAATTTTGGGACCCTCCCCCTC----------AAAGTTATTTAGAATCAAATTAGGATGTTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46086690 223 - 159171411 ACacgatgctatca-------------------------------------------------------------gtg-ctcaaagcatctctgaaa--ccctcctttgtgaaatACTGAATA----AC--T----------CA---ATGG-TAAAAAGCACCATGTTGCCATCTTCCATGTTTGAGCAATACCCAACCTATTTTTAAAGTGTTTCTTTTCTCACTTGAGTTGTT-----TAACCATGGGAACTACATACGTATTTTAGGACCTTCACCCAC----------AAAGTTATTTAGACTCAAGTTAAGATATTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1805590 222 + 3513951 ACACAATACTATCA-------------------------------------------------------------GTG-TTCAAAGCATCTCTGAAA--CCCGCCTTTGTGAAATACTGAAGA----AC--T----------CA---AAGG-TAAAAAGCACCATCTTGCTATCTTCCACATTTGAGCAATA-CCAACCTATTTTTAAAGTGTTTCTTTTCTCACTTGAATTGTT-----GAACCCAGGGAACTACATATGTATTTTGGGATCCTCACCCAC----------AAAGTTATTTAGAATCAGATTAGGATATTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1854495 223 + 1920343 ACacaatgttatca-------------------------------------------------------------gtg-ctcaaagcatctctgaaa--ccttcctttgTGAAATACTGAATA----AC--T----------CA---AAGG-TAAAAAGCACCATCTTGCCGTCTTCCATATTTGAGCAATACCCAACCTATTTTTAAAGTGTTTCTTTTCTCACTTGAATTGTT-----TAACCAGGGGAACTACATATGTATTTTGGGACCCTCACCCAC----------AAAGTTATTTAGAATCAGATTAGGATATTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969232 219 - 7032639 ACACAATGCTATCA-------------------------------------------------------------GTG-TTCAAAGCATCTCTGAAA--CCCTCCTTTGTGAAATACTGAATA----AC--T----------CA---ACGGTTAAAAAGCACCATCTTGCCATCTTCCATATTTGAGCAATACCCAACCTATTTTTAAAGT-----TTTTCTCACTTGAATTGTT-----TAACCATGGAAACTACATATGTATTTTGGGACCCTCACCCAC----------AAAGTTATTTAGACTCAGATTAGGATATTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35893873 220 - 65901067 ACAAGATGCTGTCA-------------------------------------------------------------GCG-CCCAAAACACCTCTGAAA--CTCTCCTTCGGGAAATACTGAAAAA---AC--T----------CATTAATAG-TAAAAAG--------GGTCATCTTTCATGTTTGAGTAATACCCAACAGATTTTTAAAGTGTTTCTCTTCTCATTTGCAATTTT-----TAACCACTGGAACTACATTTGAATTTTGGGACCCTCCCTGCTA---------AAAGTTATTTAGAACCAAACTAGGATATTa i micMur3.chr16 C 0 I 5340 s otoGar3.GL873537 22790207 223 + 28711273 ACACGATACAATTG-------------------------------------------------------------GTG-CTCAAAACATCTGTGAAA--CTCTCCTTTGGGAGATACTTAATAACCCAC--T----------CA-GAATAG-TAAAAAG--------GGCTGTCTTCTATATTCGAGTAAAGCCCATAGATTTTTTAAAGTGTTTCTCTTCTCATTTGATTTTTC-----TAACCACTGGAACTAAATCTGAATTTTGGAACCCTCCCTCCTGC--------AAAGTTATTTAGAACCAAACTAGGATATTA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21401334 231 + 61074082 AGATGATGCTCTTA-------------------------------------------------------------GTACCCCCAGACATCTCTAAAA--CTTGCCTT-GGGAAATATTGAGGA----ACTTT----------TA---ACAG-TAAAAAG---------GGCATCTCTTATATCTGGGTAGTACACAGCAGATTTTTAAAGTGTTTTTATTCTTGTTTGACTTTTTGTAACCAACCACAAGGACTAAATTTGGATTTTGGAACCAGCTCCCTTCCCTACCTCAGAAGTTCTTCAGAATGAAACTAGGATATTA i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 382019 269 - 852752 gcACGATGTGCTCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACGATGTG-CTCAAAACAGCTTGGAAAATCTCTCCTTTGGGAAATACTGAAGA----AT--TGAAGTACTCATA---ATAG-TCAAAAG---------ACCATCTGT-------------TGCCCAACAGACTCTAAACATGTTTCTCTTACCATTTGGATT-TT-----TAACCACTAGGCATATAGCTGCGTTTTAGGAGC----CCCTG----------AAAGTTATTTAGAACCAAAGCAGGATATCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I a score=535781.000000 s hg38.chr17_GL383564v2_alt 77507 49 + 133151 CAAGTC-AGGTGTTTGCAAATGCTAACAGTGACCACGGTACTGGTGCCTG s panTro5.chr17 16264108 49 + 83181570 CAAGTC-AGGTGTTTGCAAATGCTAACAGTGACCACGGTACTGGTGCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171566 49 + 83442489 CAAGTC-AGGTGTTTGCAAATGCTAACAGTGACCACGGTACTGGTGCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006625 49 + 4267968 CAAGTC-AGGTGACTGCAAATGCTAACAGTGACCACGGTACTGGTGCCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1987650 49 - 2193130 CAAGTC-AGGTGTCTGCAAATGCTAACAGTGACCACGGTACTGTTGCCTG i nomLeu3.chrUn_GL397460_1 C 0 M 3613 s rheMac8.chr16 30059096 49 - 77216781 CAAGTC-AGGTGTCTGCAAATGCTAACAGTGACCACTTTACTGATGCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971709 49 - 80997621 CAAGTC-AGGTGTCTGCAAATGCTAACAGTGACCACTTTACTGATGCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2027951 49 + 10377808 CAAGTC-AGGTGTCTGCAAATGCTAACAGTGACCACTTTACTGATGCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915331 49 - 8458610 TAAGTC-AGGCGTCTGCAAATGCTAACAGTGACCACTTTCCTGATGCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64870819 49 + 75148670 CAAGTC-AGGCGTCTGCAAATGCTAATAGTGACCACTTTCCTGATGCCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100352 49 + 4244037 TAAGCC-AGGCGTCTGCAAATGCTAACAGTGACCACTTTCCTGATGCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122503 49 + 4569836 CAAGTC-AGGCGTCTGCAAATGCTAACAGTGACCACTTTCCTGATGCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46086913 49 - 159171411 CAAGTC-AGGTGCCTGCAAATGCTAACAGTGACCATGGTGCTGGCACCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1805812 49 + 3513951 CAAGTC-AGGTGCCTGCAAATGCTAACAGTGACCATGGTGCTGGTGCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1854718 49 + 1920343 CAAGTC-AGGTGCCTGCAAATGCTAACAGTGACCATGGTGCGGGTGCCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969451 49 - 7032639 CAAGTC-AGGTGCCTGCAAATGCTAACAGTGACCATGGTGCTGGTGCCCG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22790430 49 + 28711273 AGTGTC-TGGTGTCTGTGAATGCTAAAGGTGACGGCAATGCCGGTGTCTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21401565 47 + 61074082 --AGTCTCTGTGTCTGCCAGTATTAA-AGCAACAGTTATGCTAGTGCCTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 382288 49 - 852752 CATCCC-TGGTCTCTGCCAATGTGGACAGTGACAGCTTAGCTGGTGCCTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=650259.000000 s hg38.chr17_GL383564v2_alt 77556 66 + 133151 GCCCCTACTGGTGCCT-GCTGATGTCTAACCAAGGTT---AATGGCTCCCATCACTGTGCATGCTGTGGT--------- s panTro5.chr17 16264157 66 + 83181570 GCCCCTACTGGTGCCT-GCTGATGTCTAGCCAAGGTT---AATGGCTCCCATCACTGTGCGTGCTGTGGT--------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171615 66 + 83442489 GCCCCTACTGGTGCCT-GCTGATGTCTAGCCAAGGTT---AATGGCTCCCATCACTGTGCGTGCTGTGGT--------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006674 66 + 4267968 GCCCCTACTGGTGCCT-GCTGATGTCTAACCAAGGTT---AATGGCTCCCATCACTGTGCGTGCTGTGGT--------- i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30059145 67 - 77216781 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATGTTGTGGT--------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971758 67 - 80997621 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATGTTGTGGT--------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2028000 67 + 10377808 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATGTTGTGGT--------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915380 67 - 8458610 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATACTGTGGT--------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64870868 67 + 75148670 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATGCTGTGGT--------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100401 67 + 4244037 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATGCTGTGGT--------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122552 67 + 4569836 GCTCCTACTGGTGCCTAACTGATGTCTAACCAAGGTT---AATGGTTCCCATCACTGTGCATGCTGTGGT--------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46086962 66 - 159171411 GCTCCTCCTGGTGCCC-TCTAACGTCTAACCAAGCTT---AATGGCTCCCATCATGGTGTGTGCTGTGGC--------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1805861 66 + 3513951 GCTCCTACTGCTGCCC-TCTGACGTCTAACCAAGGTT---AATGGCTCCCATCATGGTGTGTGCTGTCGT--------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1854767 66 + 1920343 GCTCCTACTGCTGCCC-TCTGACATCTAACCAAGGTT---AATGGCTCCCATCACGGTGTGTGCTGTGCT--------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969500 63 - 7032639 GCTCCTACTGGTGACC-TCTGATGTCTAACCAAGGTT---AATGGCTCCCATCACGGTGTGTGCTGT------------ i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22790479 52 + 28711273 ----------GT-----GCTGGCATCTAGCCAAGGTC---AACGGCTCCCACCACTGTGCATGCTGTGAT--------- i otoGar3.GL873537 C 0 M 714 s canFam3.chr9 21401612 66 + 61074082 GCCCCTGCTGGTACCT-AATGATGTCTGGTCATGCTC---GATGGCTCCCGCAGCTGTGTGTTCTGTGGC--------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 382337 78 - 852752 GTTCCTATTGGTGCCC-ACTGATGTTAGGCCACAGCTCAGAATGGCTCCTGTCACTGTGGGTCCTGGGCCCAGCCTGGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1197638.000000 s hg38.chr17_GL383564v2_alt 77622 171 + 133151 TTGTGCCAAGGCCA----CTCCCTCAGTCTGCAGATTATTCCCAGATTAACCAATCTGCTAATTATG---TCTTCTCTCCTTGAGATGAAGCTGATACTATCT-CCC-CTGCTGTGA--TGATGCCGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAAttttt-----ttttttttt-tttttt s panTro5.chr17 16264223 167 + 83181570 TTGTGCCAAGGCCA----CTCCCTCAGTCTGCAGATTGTTCCCAGATTAACCAATCTGCTAATTATG---TCTTCTCTCCTTGAGATGAAGCTGATACTATCT-CCC-CTGCTGTGA--TGATGCCGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----T-----TGttttttt-tttttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171681 167 + 83442489 TTGTGCCAAGGCCA----CTCCCTCAGTCTGCAGATTGTTCCCAGATTAACCAATCTGCTAATTATG---TCTTCTCTCCTTGAGATGAAGCTGATACTATCT-CCC-CTGCTGTGA--TGATGCCGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----t-----tgttttttt-tttttg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006740 166 + 4267968 TTGTGCCAAGGCTA----CTCCCTCAGTCTGCAGATTGTTCCCAGATTAACCAATCTGCTAATTATG---TC-TCTCTCCTTGAGATGAAGCTGATACTATCT-CCC-CTGCTGTGA--TGATGCCGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----t-----tgttttttt-tttttt i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30059212 164 - 77216781 TTGTGCCAAGGCCA----CTCCCCCAGTCTGCAGATTGTCCCCAGATTAAACAATCTGCTAGTTATG---TCTTCTTTCCTTGAGATGAAGCTTATACTATCT-CCC-CTGCTGTGA--TGATGCTGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----A--------tttttt-tttttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971825 164 - 80997621 TTGTGCCAAAGCCA----CTCCCCCAGTCTGCAGATTGTCCCCAGATTAACCAATCTGCTAGTTATG---TCTTCTTTCCTTGAGATGAAGCTTATACTATCT-CCC-CTGCTGTGA--TGATGCTGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----A--------tttttt-tttttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2028067 165 + 10377808 TTGTGCCAAGGCCA----CTCCCCCAGTCTGCAGATTGTCCCCAGATTAACCAATCTGCTAGTTATG---TCTTCTTTCCTTGAGATGAAGCTTATACTATCT-CCC-CTGCTGTGA--TGATGCTGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----A-------ttttttt-tttttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915447 166 - 8458610 TTGTGCCAAGGCTG----CTCCCCCAGTCTGCAGATTGTCCCCAGATTAACCAATCTGCTAGTTACG---TCTTCTTTCCTTGAGATGAAGCTTATACTATCT-CCC-CTGCTGTGA--TGATGTCGGTTCCATCGTCACATGTCAGTCTTAAATTCTTAAA----A------Attttttt-tttttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64870935 167 + 75148670 TTGTGCCAAGGCCACTCCCTCCCCCAGTCTGCAGATTGTCCCCAGATTAACCAATCTGCTAGTTACG---TCTTCTTTCCTTGAGATGAAGCTTATACTATCT-CCC-CTGCTGTGA--TGATGCTGGTTCCATCATCACATGTTAGTCTTAAATTCTTAAA-------------tttttt-tttttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100468 169 + 4244037 TTGTGCCAAGGCTG----CTCCCCCAGTCTGCAGATTGTCCCCAGATTAACCAATCTGCTAGTTACGTCTTCTTCTTTCCTTGAGATGAAGCTTATACTATCT-CCC-CTGCTGTGA--TGATGTCGGTTCCATCATCACATGTCAGTCTTAAATTCTTAAA----A------tttttttt-tttttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122619 167 + 4569836 TTGTGCCAAGGCCA----CTCCCCCAGTCTTCAGATTGTCCCCAGATTAACCAATCTGCTAGTTACG---TCTTCTTTCCTTGAGATGAAGCTTATTGTATCT-CCC-CTGCTGTGA--TGATGTCAGTTCCATCATCACATGTCAGTCTTAAATTCTCAAA----A-----Atttttttt-tttttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46087028 167 - 159171411 TTGTGCCAAGGCCA----CTCCCGGGGTCCGCAGATTGTCCCCAGA-TAACCAATCTGCGAATTATG---TCTTCTTTCCTGGAGATGATGCTGATTCTGTCT-CCC-CTGCTGTGCGCTGATGCCG--TCTATTGTCACATCTCAGTCTTAAATTCTTAAA----A----AAAttttact-tttttt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1805927 151 + 3513951 TTGTGCCAAGGCCA----CTCCCCGAGTCCACAGATTGTCCCCAGA-TAACTAATCTGCGTATTAGG---TCTTCTTTCCTTGAGATGATGCTGATACTATCT-CCC-CTGATGTGGGTTGATGCTG--TCTGTTGTCACACCTCAGTCTT----------A----A----AAATGTGTCT------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1854833 167 + 1920343 TTGTGCCAAGGCCA----CTCCACGAGTCCGCAGATTGTCCCCAGA-TAACCAACCTGCTAATTATG---TCTTCTTTCCTTGAGATGATGCTGATACTATCT-CCC-CTGCTGTGGGTTGAAGCCG--TATATTGTCACATCTCAGTCTTAAATTCTTAAA----A----AAATTTTAAt-tttttt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969563 148 - 7032639 ------------------------GAGTCCGCAGATTGTCCCCAGA-TAACCAATCTGCTAATTATG---TCTTCTTCCCTTGAGATGATGCCGATACTGTCT-CCC-TTGCTGTGGGTTGATGCCG--TCTATTGTCACATCTCAGTCTTAAATTCTTAAA----A----AAAttttattttttttt i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21401678 88 + 61074082 TCGTG-CAAGGCCA----CTGTCCTATCTTG-----------------GGCCAAACTGCTAGTTATG---TCTTCTCTCTTGGAGATGAAGCTGGCACTATGTCCCC-CTGCTG-------------------------------------------------------------------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 382415 148 - 852752 CTGGGCCCAGGACC----CCTCCCCAGGCT----------------TGGGCCAAACTGCAAGTTAGA---ACTT-GATCCTTGAGATAAAGTGGACACTTCCT-CCCTCTGCTGCAA--CGATGCTGGCTCCA-------ATGTTAGCCTTCAAGTCCCATA----CTCTCATATTCTAGT-TTTTT- i dasNov3.JH570468 C 0 I 48 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e otoGar3.GL873537 22790531 714 + 28711273 M e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1268294.000000 s hg38.chr17_GL383564v2_alt 77793 144 + 133151 ggagacagagtctcactctgtcaccccagctggagtgcagcggcatgatcacggctcactgcagccttgaacttcccaggctcaggctatcctcccactttagcctcttgagtacatgggactacaggcatgcaccaccatgca s panTro5.chr17 16264390 144 + 83181570 ggagacagagtctcactctgtcaccccagctggagtgcagcagcatgatcacggctcactgcagccttgaacttcccaggctcaggctatcctcccactttagcctcttgagtacatgggactacaggcatgcaccaccatgca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171848 144 + 83442489 gtagacagagtctcactctgtcaccccagctggagtgcagcagcatgatcacggctcactgcagccttgaacttcccaggctcaggctatcctcccactttagcctcttgagtacatgggactacaggcatgcaccaccatgca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4006906 144 + 4267968 ggagacagagtctcactctgtcaccccagctggagtgcagcggcatgatcacagctcattgcagccttgaacttcccaggctcaggctatcctcccactttagcctcttgagtacatgggactacaggaatgcaccaccatgca i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30059376 144 - 77216781 tgagacagagtctcactttgtcaccccagctggagtgcagtggcatgatcatggctcactgcaaccttgaactccccgggctcaggctatcctcccacctcagcctcttgagtacatgggactacaggcatgcgccaccacgca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27971989 144 - 80997621 tgagacagagtctcactttgtcaccccagctggagtgcagtggcatgatcacggctcactgcaaccttgaactccccgggctcaggctatcctcccacctcagcctcttgagtacatgggactacaggcatgcgccaccacgca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2028232 144 + 10377808 tgagacagagtctcactttgtcaccccagctggagtgcagtggcatgatcacggctcactgcaaccttgaactccccgggctcaggctatcctcccacctcagcctcttgagtacatgggactacaggcatgcgccaccacgca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915613 144 - 8458610 tgagacagagtctcactctgtcaccccagctggagtgcagtggcatgatcacggctcactgcagccttgaactccccaggctcaggctatcctcccacctcagcctcttgagtacatgggactacaggcatgccccaccatgca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871102 144 + 75148670 tgagacaaagtctcactctgtcaccccagctggagtgcagtggcatgatcacggctcactgcaaccttgaactccccgggctcaggctattctcccacctcagcctcttgagtacatgggactataggcatgcaccaccacgca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100637 144 + 4244037 tgagacagagtctcactctgtcaccccacctggagtgcagtggcatgatcacggctcactgcagccttgaactccccaggctcaggctatcctcccacctcagcctcttgagtacatgggactacaggcatgccccaccatgca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122786 144 + 4569836 tgagacagagtctcactctgtcaccccagctggagtacagtggcatgatcacggctcactgcagccttgaactccccaggctcaggctatcctcccacctcagcctcttgagtacatgggactacaggcatgtgccaccacgca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46087195 144 - 159171411 gaagacagagtctcactctgtcaccccagctggaatgtagtggcacaatcatggctcactgaagccttgaactccccaggctcacgctatcctcccacctcagcctcttgagtagatgggtctccaggcgtacaccaccacgcA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806078 139 + 3513951 -----cagagtctcactctgtcaccccagctggaatgcagtggcacgatcatgactcactgaagccttgaactctccaggctcaggctatcctcccaccttagcctcttgagtagatgggactacaggcgcacaccaccacaca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855000 144 + 1920343 gaagacagagtctcactctgtcaccccagctggaatgcagtggcacagtcatggctcactgaagccttgaactccccgggctcaggctatcctcctacctcagccccttgagtagatgggactacaggcacacaccaccacgca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969711 144 - 7032639 gaagacggagtctcactctgtcaccccagctagaatgcagtggcacgatcatggctcactgaagccttgaactctccaggctcaggctatcctcccacctcagcctcttgagtagatgggactacaggcgcacaccaccatgca i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 382563 48 - 852752 I e canFam3.chr9 21401766 0 + 61074082 C e otoGar3.GL873537 22790531 714 + 28711273 M e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=22920.000000 s hg38.chr17_GL383564v2_alt 77937 2 + 133151 tg s panTro5.chr17 16264534 2 + 83181570 tg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171992 2 + 83442489 tg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007050 2 + 4267968 tg i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30059520 2 - 77216781 tg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972133 2 - 80997621 tg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2028376 2 + 10377808 tg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915757 2 - 8458610 tg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871246 2 + 75148670 tg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100781 2 + 4244037 tg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122930 2 + 4569836 tg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46087339 2 - 159171411 TG i calJac3.chr5 C 0 I 10948 s saiBol1.JH378271 1806217 2 + 3513951 tg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855144 2 + 1920343 tg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969855 2 - 7032639 tg i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21401766 2 + 61074082 TG i canFam3.chr9 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 382563 48 - 852752 I e otoGar3.GL873537 22790531 714 + 28711273 M e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1655804.000000 s hg38.chr17_GL383564v2_alt 77939 207 + 133151 gccaatttttgtattatttgtagaga-ggggtttcgctgggttatcc--atgctggtcttgaactcctgggctgaagtgatctgcctacttcagcctcccaaattgctgggattacaagtgtgagcc----actgcacctggccAGTCTTAAATTCTTGTGCTCTCATATTCTAGTTCACTTAATATCTACTCCTTTGTTGTTGATGCT------GCTGC s panTro5.chr17 16264536 207 + 83181570 gccaatttttgtattatttgtagaga-ggggtttcgctgggttatcc--acgctggtcttgaactcctgggctgaagtgatctgcctacttcagcctcccaaattgctgggattacaagtgtgagcc----actgcgcctggccAGTCTTAAATTCTTGTGCTCTCATATTCTAGTTCACTTAATATCTACTCCTTTGTAGTTGATGTT------GCTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16171994 207 + 83442489 gccaatttttgtattatttgtagaga-ggggtttcgctgggttatcc--acgctggtcttgaactcctgggctgaagtgatctgcctacttcagcctcccaaattgctgggattacaagtgtgagcc----actgcgcctggccAGTCTTAAATTCTTGTGCTCTCATATTCTAGTTCACTTAATATCTACTCCTTTGTAGTTGATGTT------GCTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007052 207 + 4267968 gccaatttttgtattatttgtagaga-ggggtttcgctgggttatcc--acgctggtcttgaactcctgggctgaagtgatctacctacttcagcctcccaaattgctgggattacaagtgtgagcc----actgcgcctggccAGTCTTAAATTCTTGTGCTCTCATATTCTAGTTCACTTAATATCTACTCCTTTGTTGTTGATGTT------GCTGC i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30059522 202 - 77216781 gccaatttttgtattatttgtagaga------caagctgggttatcc--acgctggtcttgaactcctgggctgaagcgatctgcctacctcggcctcccaaattgctgggattacaagtgtgagcc----actgtgcctggccAGTCTTACATTCTTGCGCTCTCATATTCTAGTTCATTTAATATCTACTCCTTTGTTGTTGATGTT------GCTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972135 202 - 80997621 gccaatttttgtattatttgtagaga------caagctgggttatcc--acgctggtcttgaactcctgggctgaagcgatctgcctacctcggcctcccaaattgctgggattacaagtgtgagcc----actgtgcctggccAGTCTTACATTCTTGCGCTCTCATATTCTAGTTCATTTAATATCTACTCCTTTGTTGTTGATGTT------GCTGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2028378 202 + 10377808 gccaatttttgtattatttgtagaga------caagctgggttatcc--acgctggtcttgaactcctgggctgaagcgatctgcctacctcggccttccaaattgctgggattacaagtgtgagcc----actgtgcctggccAGTCTTACATTCTTGCGCTCTCATATTCTAGTTCATTTAATATCTACTCCTTTGTTGTTGATGTT------GCTGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1915759 202 - 8458610 gccaatttttgtattatttgtagaga------ccagctgggttatcc--acgctggtcttgaactcctgggctgaagcgatctgcttacctcggcctcccaaattgctgggattacaagtgtgagcc----attgcgcctggccAGTCTTAAATTCTTGCGCTCTCATATTCTAGTTCATTTAATATCTGCTCCTTTGTTGTTGATGTT------GCTGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871248 202 + 75148670 gctaatttttgcattatttgtggaga------ccagctgggttatcc--acgctggtcttgaactcctgggctgaagtgatctgcctacctcagcctcccaaattgctgggattacaagcatgagcc----actgcgcctggccAGTCTTAAATTCTTGCGCTCTCATATTCTAGTTCATTTAATATCTGCTCCTTTGTTGTTGATGTT------GCTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100783 202 + 4244037 gccaatttttgtattatttgtagaga------ccagctgggttatcc--acgctggtcttgaactcctgggctgaagcgatctgcttacctcggcctcccaaattgctgggattgcaagtgtgagcc----attgcgcctggccAGTCTTAAATTCTTGCGTTCTCATATTCTAGTTCATTTAATATCTGCTCCTTTGTTGTTGATGTT------GCTGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2122932 202 + 4569836 gccaatttttgtattatttgcagaga------ccagctgggttatcc--acactggtcttgaactcctgggctgaagcgatctgcccatctcagcctcccaaattgctgggattacaagtgtgagcc----actgcgcctggccAGTCTTACATTCTTGCACTCTCATATTCTAGTTCATTTAATATCTACTTCTTTGTTGTTGATGTT------GCTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113212773 207 + 159171411 gctaatttttgtattatttgtagagacagggttttgccgggttatcc--aggttggtcttgaactcctgggttcaagtgatccacccacttcagcct-ccacattgctgggattatgggtgtgagct----gctgtgcctggccAGTCTTAAATTACTGTGGTCTCATATTCTAGTTCATTTAATGTTTCCTCCTTCACTGTTGATGTT------GCTGC i calJac3.chr5 n 10948 C 0 s saiBol1.JH378271 1806219 212 + 3513951 gctaatttttgtgttatttgtagagacaaggttttgctgggttatcc--aagttggtcttgaactcctggcttaaagtgatccgcccacctcagcttcccacattgctgggattatgggtgtgagctgctcgctgtgcctggccAGTCTTAAATTCTTGCGGTCTCATATTCTAGTTCATTTAGTGTTTCCTCCTTTGTTGTTGATGTT------GCTGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855146 207 + 1920343 gctaatttttgtattatttgtagagacagggttttgccggattatcc--atgctggttttgaactcctgggttacagtgatccacccatctcagcctcccacattgctgggattataggtgtgagcc----gctgtgcctggccAGTCTTAAATTCTTGTGGTCTCATATTCTAGTTCATTTAGTGTTTCCTCCTTTGTTATTGATGTC-------CTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6969857 207 - 7032639 gctaatttttgtattatttgtagagacagggttttgctgggttatcc--atgctggttttgaactcctgggttaaagtgatccgcccacctcagcct-ccacattgctgggattatgggtgtgagcc----gctgtgcctggccAGGCTTAAATTCTTGTGGTCTCATATTCTAGTTCATTTAGTGTTTCCTCCTTTGTTGTTGATGTT------GCTGC i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21401768 96 + 61074082 ----------------------ACGA------------AGGTTGTTCCAATGTTGGTCATAAA-TCCTTGTCTGAA----------------------------TGC------------------------ACTGTG-------------------------------------GTTCTCTTAGCATCTGCTTTGCTATTGCTGATATTTGTGGTGCTGC i canFam3.chr9 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 382563 48 - 852752 I e otoGar3.GL873537 22790531 714 + 28711273 M e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=2825568.000000 s hg38.chr17_GL383564v2_alt 78146 299 + 133151 AG------------------CTTAGACAGGAGACCTTGGAAGACCGTCTGAGTGATACTCCATCCTCTGCTCAGAATG-Tcttagacccagtttgtggactctattctctctttcctcagggagagttcattccctggagctacctgcatgcctcatgaaaacc-gcccttgttcaatttatcccggcagttctccacacatgcTGGGATTACTGTCCACTGATAGTTACCTCTCAGCTACCTTCACCAGGAACA-GTGCCTCCCAAATACCCAGTTGCATGCTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA s panTro5.chr17 16264743 299 + 83181570 AG------------------CTTAGACAGGAGACCTTggaagaccatctgagtgatactccatgctctgctcagaatg-tcttagacccagtttgtggactctattctctctttcctcagggagagttcattccctggagctacctgcatgcctcatgcaaacc-gcccttgtttaatttatcccggcagttctccacacatgcTGGGATGACTGCCCACTGATAGTTACCTCTCAGCTACCTTCACCAGGAACA-GTGCCTCCCAAATACCCAGTTGCACGTTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172201 298 + 83442489 AG------------------CTTAGACAGGAGACCTTggaagaccatctgagtgatactccatgctctgctcagaatg-tcttagacccagtttgtggactctattctctctttcctcagggagagttcattccctggagcta-ctgcatgcctcatgcaaacc-acccttgttcaatttatcccggcagttctccacacatgcTGGGATTACTGCCCACTGATAGTTACCTCTCAGCTACCTTCACCAGGAACA-GTGCCTCCCAAATACCCAGTTGCACGTTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007259 275 + 4267968 AG------------------CTTAGACAGGAGACCTTggaagaccatctgagtgatactccatgctctgctcagaatg-tcttagacccagtttgtggactctattctctctttcctcagggagagttcattccctggagcta-ctgcatgcctcatgcaaacc-g-ccttgttcaatttatcccggcagttctccacaca-GCTGG---------------------ACCTCTCAGCTACCTTCACCAGGAACA-GTGCCTCCCAAATACCCAGTTGCATGCTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30059724 299 - 77216781 GG------------------CTTAGGCAGGAGACCTTGGAAGATCATCTGAGTGATACTCCATGCTCTGCTCAGAATG-Tcttagacccagtttgtggactctagcctctctttcctcagggagagttcattccccggagccgcctccaggcctcatgcaaatc-gcccttgttcactttatcccggcagttctccacacatTCTGGGATCACTGTCCACTGATAGTTACCGCTCAGCTGCCTTCACAGGGAACA-GTGCCTCCCAAACACCCTGTTGCATGTTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972337 299 - 80997621 GG------------------CTTAGGCAGGAGACCTTGGAAGATCATCTGAGTGATACTCCATGCTCTGCTCAGAATG-Tcttagacccagtttgtggactctagcctctctttcctcagggagagttcattccccggagccgcctccaggcctcatgcaaatc-gcccttgttcactttatcccggcagttctccacacatTCTGGGTTTACTGTCCACTGATAGTTACCGCTCAGCTGCCTTCACAGGGAACA-GTGCCTCCCAAACACCCTGTTGCATGTTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2028580 299 + 10377808 GG------------------CTTAGGCAGGAGACCTTGGAAGATCATCTGAGTGATACTCCATGCTCTGCTCAGAATG-Tcttagacccagtttgtggactctagcctctctttcctcagggagagttcattccccggagccgcctccaggcctcatgcaaatc-gcccttgttcactttatcccggcagttctccacacatTCTGGGATTACTGTCCACTGATAGTTACCGCTCAGCTGCCTTCACAGGGAACA-GTGCCTCCCAAACACCCTGTTGCATGTTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i macNem1.NW_012014910v1 C 0 I 5835 s cerAty1.NW_012006043v1 1915961 299 - 8458610 GG------------------CTTAGGCAGGAGACCTCGGAAGATCATCTGAGTGATACTCCATGCTCTGCTCAGAATG-Tcttagacccagtttgtgaactctagcctctctttcctcagggagagttcattccccggagctgcctccatgcctcatgcaaatc-gcccttgttcactttatcccggcagttctccacacatTTTGGGATTACTGTCCACTGATAGTTACCGCTCAGCTGCCTTCACCGGGAACA-GTGCCTCCCAAACACCCTGTTGCATGCTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871450 299 + 75148670 GG------------------TTTAGGCAGGAGACCTTGGAAGATCATCTGAGTGATACTCCATGCTCTGCTCAGAATG-Tctcagacccagtttgtggactctagcctctctttcctcagggagagttcattccctggagccgcctccatgcctcatgcaaatc-gcccttgttcaatttatcccagcagttctccacacatTCTGGGATTACTGTCCACTGATAGTTACCTCTCAGCTGCCTTCACTGGGAACA-GTGCCTCCCAAATACCCTGTTGCGTGCTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2100985 299 + 4244037 AG------------------CTTAGGCAGGAGACCTTGGAAGATCATCTGAGTGATACTCCATGCTCTGCTCAGAATG-Tcttagacccagtttgtggactctagcctctctttcctcagggagagttcattccccggagccgcctccatgcctcatgcaaatc-gcccttgttcactttatcccggcagttctccacacatTTTGGGATTACTGTCCACTGATAGTTACCGCTCAGCTGCCTTCACCGGGAACA-GTGCCTCCCAAACACCCTGTTGCATGCTTTGTGAGTGAGAGGTCAAAGTTCTCAACACAGTAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123134 299 + 4569836 GG------------------CTTAGGCAGGAGACCTTGGAAGATCATCTGAGTGAGACTCCATGCTCTGCTCAGAATG-Tcttagacccagtttgtggactctagcctctctttcctcagggagagttcattccccggagctgcctccttgcctcatgcaaatc-gcccttgttcaatttgtcccggcagttctccacacatTCTGGCATTACTGTCCACTGATAGTTACCTCTCAGCTGCCTTCACCGGGAACA-GTGCCTCCCAAATACCCTGTCGCGTGCTTTGTGAGTGAGAGTTCAAAGATCTCAACATGGTGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113212980 297 + 159171411 AG------------------CTTAGGCAGGAGACCTTGAAAGATCATCTGAGTGGCGCTCCATGCTGTGCTCAGAATA-Tcttagacccagtttgtggactgtagcctctctttcctcagggtgcgttcattcccaggagccacctccatgcttcatgcaaatc-acccttgttccatttatcttggcagttctccacacatgcTAGGATCACTGTCCA--GATAGTTACCTCTCAGCTGCCTTCACCAGGAACA-GGACCTCCCAAATGCCCTGTTGCATGCTTTGTGAGTGAGAGCTCAAAGTTCCCAACACAGCAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806431 299 + 3513951 AG------------------CTTAGGAAGGAGACCTTGAAAGATCATCTGAGTGGCGCTCCATGCTGTGCTCAGAATA-Tcttagacccagtgtgtggactccagcctctctttcctcagggtgagttcattcccaggagccacctccatgcttcatgcaaatc-acccttgttcaatttagcttggcagttctccacacatgcTGGGATCACTGTCCACTGATAGTTACCTCTCAGCTGCCTTCACCAGGAACA-GGACCTCCCAAATACCCTGTTGCATGCTTTGTGAGTGAGAGCTCAAAGTTCCCAACACAGTAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855353 298 + 1920343 AG------------------CTTAGGCAGGAGACCTTGAAAGATCATCTGAGTGGCACTCCATGCTGTGCTCAGAATA-Tcttagacccagtgtgtggactctaacctctctttcctcagggtgagttcattcccaggagccacctccatgcttcatgcaaatc-acccttgttcagtttatcttgacagttctccacac-TGCTGGCATCACTGTCCACTGACAGTTACCTCTCAGCTGCCTTCACCAGGAACA-GTACCTCCCAAATACCCTGTTACATGCTTTGTGAGTGAGAGCTCAAAGTCCCCAACACAGTAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970064 298 - 7032639 AG------------------CTTAGGCAGGAGACCTTGAAAGATCATCTGAGTGGCACTGCATGCTGTGCTCAGAACA-Tcttagacccagtgtgtggactctagcctctcttt-ctcagggtgagttcattcccaggagccacctccatgcttcatgcaaatc-acccttgttcaatttatcttggcagttctccacacatgcTAGGATCACTGTCCACTGATAGTTACCTCTCAGCTGCCTTCACCAGGAACA-GTACCTCCCAAATACCCTGTTGCATGCTTTGTGAGTGAGAGCTCAAAGTTCCCAACACAGGAAA i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21401864 301 + 61074082 TGGAGCTCCCTTATCCAGACCTCAGGCA--CAGCCCTAGAAGATGA-CAGAGTGACACTTCGTGCTGCGCTCAGAATG-TCTCAGGTCCAGTTGGTATAGTTCGGC--CTCTTGCCT---------TTCCTGCCCAGGAGCCACCTGCATGTGTCATATGAGTA---CCTTATGCACTCTATGCCATCCATTCTTCCTATGTGCTGGGATCACTGTCTACCCACAGGAACCA-GCAGCTGCCTTTATCAGGGACAGGTGCCTCCCAAACACCCAGTTCTTTGCCTTGCAAATGAGAGCTCCAACTTGTCAGCACAGTAAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 382611 285 - 852752 AG------------------CTCAGTAGTGAGACCCTGAGGGATAATCTGAG-GACACTCCACGTTGTGCTCAGCATACTCTGGAAGACAGTTtgtgcactctaggctctctt--cccaggagacgttctttcctaggagccacctccatccttcgtacaaatccacccttgtccaatctatcccatcagttctctgtacatTCTAGGTCCACTGT-------------CCTTGCTGATGCTTTTATCAGGACAG-GGGCCTCTTGAGTATTCTGCTCTCTGCCTTGTGATAGAGATTTCAAATGTTGCAGCACAGTGCA i dasNov3.JH570468 I 48 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e otoGar3.GL873537 22790531 714 + 28711273 M e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=613011.000000 s hg38.chr17_GL383564v2_alt 78445 71 + 133151 TACACTTTGTTTTTAGTGTTCAATTTATAAAATATTAAGCAAAAC-TTGTTTCTATGTTTGAT---GTTGTGTCA s panTro5.chr17 16265042 71 + 83181570 TACACTTTGTTTTTAGTGTTCAATTTATAAAATATTAAGCAAAAC-TTGTTTCTATGTTTGAT---GTTGTGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172499 71 + 83442489 TACACTTTGTTTTTAGTGTTCAATTTATAAAATATTAAGCAAAAC-TTGTTTCTATGTTTGAT---GTTGTGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007534 71 + 4267968 TACACTTTGTTTTTAGTGTTCAATTTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGAT---GTTGTGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060023 74 - 77216781 TACACCTTGTTCTTAGTGTTCAGTGTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGATGGAGTTGTGTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972636 74 - 80997621 TACACCTTGTTCTTAGTGTTCAGTGTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGATGGAGTTGTGTCA i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916260 74 - 8458610 TACACCTTGTTCTTAGTGTTCAATGTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGACGGAGTTGTGTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871749 74 + 75148670 TACACCTTGTTCTTAGTGTTCAATGTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGATGGAGTTGTGTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2101284 74 + 4244037 TACACCTTGTTCTTAGTGTTCAATGTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGACGGAGTTGTGTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123433 74 + 4569836 TACACCTTGTTCTTAGTGTTCAATTTATAAAATATTAAGCAAAAC-TTGTCTCTATGTTTGATGGAGTTGTGTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113213277 74 + 159171411 TACACTTTGTTCTTAGTGTTCGGTGGACAAAATATTAAGCAAAAC-TTGTATCTACGTTTGATGGCGTTGTGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806730 74 + 3513951 TACACCCTGTTCTTAGTGTTCAATGTATAAAATCGTAAGCAAAAC-TTGTATCTACGTTTGATGGTGTTTTGTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855651 74 + 1920343 TACACTTTGTTCTTAGTGTTCAATGTATAAAATATTAAGCAAAAC-TTGTATCTACGTTTGATGGCGTTGTGTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970362 74 - 7032639 TACACTTTGTTTTTAGTGTTTGGCGTATAAAATATTAAGCAAAAC-TTGTATCTATGTTTGATGGCGTTGTGTCG i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21402165 74 + 61074082 TATACTTT-TTCTTATTGTTCATTGTGTAAAGTATCAAATGAAACTTTGCCTCTCTGTTAGACAAGGTTGTGTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 382896 74 - 852752 TACAAAGTGTTCTCATAGCTCAAGGTGTAAAGTATTAAATGAAAC-CAGTTTCTGTGTTCGATGGTTCTGTGCCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e otoGar3.GL873537 22790531 714 + 28711273 M e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1334747.000000 s hg38.chr17_GL383564v2_alt 78516 154 + 133151 GCGGAA-AACATGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATGGTGCTCTCCT------------TGGAGGATAAAAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAATTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT s panTro5.chr17 16265113 154 + 83181570 GTGGAA-AACATGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATGGTGCTTTCCT------------TGGAGGATAAAAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAATTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172570 154 + 83442489 GTGGAA-AACATGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATGGTGCTTTCCT------------TGGAGGATAAAAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAATTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007605 151 + 4267968 GTGGAA-AACATGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATGGTGCTTTCCT------------TGGAGGATAAAAG-AAGGAGTGTCAGGGAGATCAC--TTTC-TCAGGACAAAGCCAAATTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060097 154 - 77216781 GTGGGA-AACGTGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATCGTGCTTTTCT------------TGGAGGATAAGAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAACTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972710 154 - 80997621 GTGGGA-AACGTGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATCGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAGTGTCAGGGAGATCACCTTTTC-TCAGGACAAAGCCAAACTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916334 154 - 8458610 GTGGGA-AACGTGGGTCTAGGGAAAATAGTCCTTAGTTCTTATCACTGCCATCGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAACTGCTCTTCTGAAGTATCTGGGAAC-GG-TCA-GTGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871823 154 + 75148670 GTGGGA-AACGTGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATCGTACTTTCCT------------TGGAGGATAAGAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAACTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2101358 154 + 4244037 GTGGGA-AACGTGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATCGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAGTGTCAGGGAGATCACTTTTTC-TCAGGACAAAGCCAAACTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123507 154 + 4569836 GTGGGA-AACGTGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATCGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAGTGTCAGGGAGCTCACTTGTTC-TCAGGACAAAGCCAAACTGCTCTTCTGAAGTATCTGGGAAG-GG-TCA-GTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113213351 136 + 159171411 GTGGTA-AACACGGGTCTAGGGAAAGCAGTCCTTAGTTCTTACCTCTGCCATGGTGCTTTCCT------------TGGAGGATAAGAGGAAGGAGTGTCAGAGAGATCACTTTTTC-TCAGGAC-AAGGCAAAT-----------------TGGGAAG-GG-TCA-GTGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806804 137 + 3513951 GCGGGA-AACATGGGTCTAGGGAAAGCAGTCCTTAGTTCTTATCTCTGCCATGGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAATGTCAAGAAGATCACCTTTTC-TCAGGACAAAGGCAAAT-----------------TGGAAAG-GG-TTA-GTGTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855725 137 + 1920343 GTGGTA-AACATGGGTCTAGGGAAAACAGTCCTTAGTTCTTATCTCTGCCATGGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAGTGTTAGGGAGATCACTTTTTC-TCAGGACAAAGGCAAAT-----------------TGGGAAG-GG-TCA-GTGTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970436 135 - 7032639 GTGGGA-AACATGGGTCTAGGGAAAGCAGTCCTTAGTTCTTATCTCTACCATGGTGCTTTCCT------------TGGAGGATAAGAGAAAGGAATGTCAGGGAGATCACTTTTTCTTCAGGAC-AAGG-AAAT-----------------TGG-AAG-GG-TCA-GTGTC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22791246 147 + 28711273 GTGGGA-AAACTTGGTCCTTGGAAGGCTGTCCTTAA-------CTGTGTCACTGTGCTTTCTT------------TGGTGGAGAAGACAAAGGTGTGTCAGGGAAATCACTTTTCC-TCAGGACAAAGCTAAATTAGT-TGCTGAGATACTTGGATAGAGG-TCA-GCATT i otoGar3.GL873537 M 714 C 0 s canFam3.chr9 21402239 155 + 61074082 GTGGGACAATTGGGGTCTGGGGGCAGCTGTCCTGAGTCTTGGTCTCTGCCATGGTGCTTTCTT------------TGGTGAAGAAGAGAAAGGAGTGCCAGGGAAATCACTTTGTC-CTAGAACCAGGCCGAACTGAT-TTCTGAGATGTCTGCGTGG-GATTCA-GTGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 382970 164 - 852752 GTGGGA-AAACTGGGTCCA-GGATGGCTGTTCTGAGTCTTTGCCTCTGTCACAATGCTTTCTTCTTGCTCTGCTCTGATGGAGAAGAGAAAGGATTGTCA-GCAAATCATTTTTTC-TTGGGACAAAGCCAAATTGGT-TTCTGAGCTATCTGGGCTG-GG-CTGTATATT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=19845.000000 s hg38.chr17_GL383564v2_alt 78670 2 + 133151 AC s panTro5.chr17 16265267 2 + 83181570 AC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172724 2 + 83442489 AC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007756 2 + 4267968 AC i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060251 2 - 77216781 AC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972864 2 - 80997621 AC i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916488 2 - 8458610 AC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871977 2 + 75148670 AC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2101512 2 + 4244037 AC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123661 2 + 4569836 AC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113213487 2 + 159171411 AC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806941 2 + 3513951 AC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855862 2 + 1920343 CC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970571 2 - 7032639 AC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22791393 2 + 28711273 AC i otoGar3.GL873537 C 0 I 2993 s dasNov3.JH570468 383134 2 - 852752 AC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e canFam3.chr9 21402394 0 + 61074082 C e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=25620.000000 s hg38.chr17_GL383564v2_alt 78672 4 + 133151 CACt s panTro5.chr17 16265269 4 + 83181570 CACt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172726 4 + 83442489 CACt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007758 4 + 4267968 CACt i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060253 4 - 77216781 TACt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972866 4 - 80997621 TACt i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916490 4 - 8458610 TACt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871979 4 + 75148670 TACt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2101514 4 + 4244037 TACt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123663 4 + 4569836 TACt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113213489 4 + 159171411 CAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806943 4 + 3513951 CAAt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855864 4 + 1920343 CACt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970573 4 - 7032639 CACt i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 383136 4 - 852752 CACT i dasNov3.JH570468 C 0 I 3208 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1586066.000000 s hg38.chr17_GL383564v2_alt 78676 220 + 133151 gagaaataaaactaaaatcctaagtcccccagctgactgaacggactctgtcttggccaaggggaccgaagagaaaccttaaaaac-agagtcacatgtatgtttattgcagcaatgttcacaatagcaaaggcctggaatcaacccaaatgcccaataatgatagactggataaagaaaatgtggcacatatataccatggaatactatgcagccat---aaa s panTro5.chr17 16265273 220 + 83181570 gagaaataaaactaaaatcctaagtcccccagctgactgaacggactctgtcttggccaaggggaccgaagagaaaccttaaaaac-agagtcacatgtatgtttattgcagcaatgttcacaatagcaaaggcctggaatcaacccaaatgcccaataatgatagactggataaagaaaatgtggcacatatataccatgggatactatgcagccat---aaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172730 220 + 83442489 gagaaataaaactaaaatcctaagtcccccagctgactgaacggactctgtcttggccaaggggaccgaagagataccttaaaaac-agagtcacatgtatgtttattgcagcaatgttcacaatagcaaaggcctggaatcaacccaaatgcccaataatgatagactggataaagaaaatgtggcacatatataccatgggatactatgcagccat---aaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007762 220 + 4267968 gagaaataaaactaaaatcctaagtcccccagctgactgaacggactctgtcttggccaaggggaccgaagagaaaccttaaaaac-agagtcacatgtatgtttattgcagcaatgttcacaatagcaaaggcctggaatcaacccaaatgcccaataatgatagactggataaagaaaatgtggcacatatataccatggaatactatgcagccat---aaa i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060257 216 - 77216781 gagaaataaaactaaaatcctaagtcccccaactgactgaacagactctgtcttggccgagggtaccaaagagaaaccttaaaaac-agagtcacatgtatgtttattgcagcactgttcacaatagcaaagacttggaatcaacccaaatgcccaaaaatgatagactggataaagaaaatgtggcacagatacaccatggaataccat-cagccat------ i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27972870 216 - 80997621 gagaaataaaactaaaatcctaagtcccccaactgactgaacagactctgtcttggccgagggtaccaaagagaaaccttaaaaac-agagtcacatgtatgtttattgcagcactgttcacaatagcaaagacttggaatcaacccaaatgcccaaaaatgatagactggataaagaaaatgtggcacagatacaccatggaataccat-cagccat------ i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916494 217 - 8458610 gagaaataaaactaaaatcctaagtcccccaactgactgaacagactctgtcttggccaagggtaccaaagagaaaccttaaaaac-agagtcacacgtatgtttattgcagcactgttcacaatagcaaagacttggaatcaacccaaatgcccaaaaatgatagactggataaagaaaatgtggcacagatacaccatggaataccatgcagccat------ i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64871983 221 + 75148670 gagaaataaaactaaaatcctaagtcccccaactgactgaacagactctgtcttggccgagggtaccaaagagaaaccttaaaaacAAGAGTcacacgtatgtttattgcagcactgttcacaatagcaaagatttggaatcaacccaaatgcccaacaatgatagactggataaagaaaatgtggcacagatacaccatggaataccatgcagccataaa--- i chlSab2.chr16 C 0 I 15 s manLeu1.NW_012106252v1 2101518 216 + 4244037 gagaaataaaactaaaatcctaagtcccccaactgactgaacagactctgtcttggctgagggtaccaaagagaaaccttaaaaac-agagtcacatgtatgtttattgcagcactgttcacaatagcaaagacttggaatcaacccaaatgcccaaaaatgatagactggataaagaaaatgtggcacagatacaccatggaataccat-cagccat------ i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123667 217 + 4569836 gagaaataaaactaaaatcctaagccccccaactgactgaacagactctgtctttgccgagggtaccaaagagaaaccttaaaaac-agattcacacgtatgtttattgcagcactgttcacaatagcaaagacttggaatcaacccaaatgcccaacaatgatagactggataaagaaaatgtggcacagatataccatggaataccatgcagccat------ i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113213493 217 + 159171411 gagaaataaaactaaaatcctaagt-ccccaattgacagaatggaccctgtcttggccaaggggaccaaagggaaaccttagaaac-agaggcacatgtatgtttactgcagcactgctcacaatagcaaagacttggcaccaacccaaatgcccatcaatggtagactggaaaaagaaaatgtggcacatatacaccatggaatactat--agccag---aaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1806947 219 + 3513951 gagaaataaaactaaaatcctaagt-ccccaattgactgaaaagaccctgtcttggccaaggggaccaaagggaaaccttaaaaac-agagtcacatgtatgtttattgcagcactgttcacaatagcaaagatttggcaccaacccaaatgcccatcaatagtagactggagaaagaaaatgtggcacacatataccacggaatactatgcagccac---aaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1855868 218 + 1920343 gagaaataaaactaaaatcctaagt-ccccagttgacagaatggacactgtcttggccaaggggaccaaagggaaaccttaaaaac-agagtcacatgtatgtttattgcagcact-ttcgcaatagcaaagatttggcaccaacccaaatgcccataagcagtagactggagaaagaaaatgtggcacatatacacgatggaatactatgcagccac---aaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970577 219 - 7032639 gagaaataaaactaaaatcctaagt-ccccagttgactgaacggaccctgtcttggccaaggggaccaaagggaaaccttaaaaac-agagtcacatgtatgtttactgcagcactgttcacaatagcaaagacttggcaccaactcaaatgcccatcaatggtagactggaaaaagaaaatgtggcacatatacaccatggaatactatgcagccat---ata i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=29070.000000 s hg38.chr17_GL383564v2_alt 78896 5 + 133151 aaagg s panTro5.chr17 16265493 5 + 83181570 aaagg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172950 5 + 83442489 aaagg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007982 5 + 4267968 aaagg i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060473 5 - 77216781 aaagg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973086 5 - 80997621 aaagg i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916711 5 - 8458610 aaagg i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2101734 5 + 4244037 aaagg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123884 5 + 4569836 aaagg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 113213710 5 + 159171411 aaagg i calJac3.chr5 C 0 n 0 s saiBol1.JH378271 1807166 5 + 3513951 aaagg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1856086 4 + 1920343 aagg- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970796 5 - 7032639 aaagg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e chlSab2.chr16 64872204 15 + 75148670 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=46267.000000 s hg38.chr17_GL383564v2_alt 78901 14 + 133151 ttgtgttcatgtcc s panTro5.chr17 16265498 14 + 83181570 atgtgttcatgtcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172955 14 + 83442489 atgtgttcatgtcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4007987 14 + 4267968 atgtgttcatgtcc i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060478 13 - 77216781 atgcattcgtgtc- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973091 13 - 80997621 atgcattcgtgtc- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916716 13 - 8458610 atgcattcgtgtc- i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2101739 13 + 4244037 atgcattcgtgtc- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123889 13 + 4569836 atgcattcgtgtc- i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1807171 14 + 3513951 atgagttcatgttc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1856090 14 + 1920343 atgagttcatgttc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6970801 14 - 7032639 atgagttcatgtcc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e chlSab2.chr16 64872204 15 + 75148670 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=717604.000000 s hg38.chr17_GL383564v2_alt 78915 115 + 133151 tttgcagggacaaggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgggagttgaacaatgagaacac s panTro5.chr17 16265512 115 + 83181570 tttgcagggacaaggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacactgcatgttctcactcataagtgggagttgaacaatgagaacac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16172969 115 + 83442489 tttgcagggacaaggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacactgcatgttctcactcataagtgggagttgaacaatgagaacac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4008001 114 + 4267968 tttgca-ggacaaggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgggagttgaacaatgagaacat i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060491 108 - 77216781 tttgcagggacatggatgaagctgg------tcattctcagccaactaacacaggaaaagaaaacc-aacactgcatgttctcactcgcaagtgggagttgaacaatgagaacac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973104 108 - 80997621 tttgcagggacatggatgaagctgg------tcattctcagccaactaacacaggaaaagaaaacc-aacactgcatgttctcactcgcaagtgggagttgaacaatgagaacac i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916729 114 - 8458610 tttgcagggacatggatgaagctggaagccatcattctcagccaactaacacaggaaaagaaaacc-aacactgcatgttctcactcgcaagtgggagttgaacaatgagaacac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64872219 114 + 75148670 tttgcagggatatggatgaagctggaagccctcattctcagccaactaacacaagaaaagaaaacc-aacaccgcatgttttcactcataagtgggagttgaacaatgagaacac i chlSab2.chr16 I 15 C 0 s manLeu1.NW_012106252v1 2101752 114 + 4244037 tttgcagggacatggatgaagctggaagccatcattctcagccaactaacacaggaaaagaaaacc-aacactgcatgttctcactcgcaagtgggagttgaacaatgagaacac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2123902 114 + 4569836 tttgcagggacatgggtgaagctggaagccatcattctcagccaactaacacaggaacagaaaacc-aacaccgcatgttctcactcataagtgggagttgaacaatgagaacac i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1807185 115 + 3513951 tttgcagggacgttgatgaagctggaaaccatcattctcagtgaactaacacaggagcagaaaaccaaacactgcatgttcttactcataagtgggagttgaacaatgagaacac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1856104 115 + 1920343 tttgcagggacatggatgaagctagaaaccatcattctcagtgaactaacacaggagcagaaaaccaaacactgcatgttcttattcataagtgggagttgaacaatgagaacac i cebCap1.NW_016107730v1 C 0 I 193 s aotNan1.NW_018502359v1 6970815 114 - 7032639 tttgcagggacatggat-aagctggaaaccatcattctcagtgaactaacacaggagcagaaaaccaaacactgcatgttcttactcataagtgggagttgaacaatgagaacac i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1112342.000000 s hg38.chr17_GL383564v2_alt 79030 221 + 133151 gtggacacagggaggggatcatcacacactggggccttttggggggtggggggctaggggagggatagcattaggagaaatacctaatatagatgatgggctgatgggtggagcaaaccaccatggcacatgtacacctatgtaaaaaacctgcacgttctgcacatatattccagaacttaaagtataataag---------------aaaaagaaaaaagaaggaaagaaagaa s panTro5.chr17 16265627 222 + 83181570 gtggacacagggaggggatcatcacacactggggccttttggggggtggcgggctaggggagggatagccttaggagaaatacctaatgtagatgatgggctgatgggtggagcaaaccaccagggcacatgtacacctatgtaacaaacctgcacgttctgcacatatattccagaactgaaagtataataag--------------aaaaaagaaaaaagaaggaaagaaagaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16173084 222 + 83442489 gtggacacagggaggggatcatcacacactggggccttttggggggtggcgggctaggggagggatagccttaggagaaatacctaatgtagatgatgggctgatgggtggagcaaaccaccagggcacatgtacacctatgtaacaaacctgcacgttctgcacatatattccagaacttaaagtataataag--------------aaaaaagaaaaaagaaggaaagaaagaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4008115 220 + 4267968 gtggacacagggaggggatcatcacatactggggcctttt-gggggtggggggctaggggagggatagcattaggagaaatacctaatgtagatgatgggctgatgggtggagcaaaccaccatggcacatgcacacctatgtaacaaacctgcacgttctgcacatatattccagaacttaaagtataataag---------------aaaaagaaaaaagaaggaaagaaagaa i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060599 228 - 77216781 atggacacagggaggggaacatcacacactggggcctgttggggggtggggggttaggggagggatagcattaggagaaa----taatgtagatgatgggctgatgggtggagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacgttctgcacatatattccagaacttaaagtataataag----aaaaaaaaaaaaaaaaggaaaaagaaggaaagaaagaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973212 228 - 80997621 atggacacagggaggggcacatcacacactggggcctgttggggggtggggggttaggggagggatagcattaggagaaa----taatgtagatgatgggctgatgggtggagcaaaccaccatggcacatgtatagctatgtaacaaacctgcacgttctgcacatatattccagaacttaaagtataataag----aaaaaaaaaaaaaaaaggaaaaagaaggaaagaaagaa i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1916843 228 - 8458610 atggacacagggaggggaacatcacacactggggcctgttggggggtggggggttaggggagggatagcattaggagaaa----taatgtagatgatgggctgatgggtggagcaaaccaccatggcacatgtatacctatgtaacaaacttgcacgttctgcacatatattccagaacttaaagtataataaa----aaaaaaaaaaaaaaaaggaaaaagaaggaaagaaagaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64872333 227 + 75148670 atggacacagggaggggaacatcacacactggggcctgttggggggtggggggctaggggagggatagcattaggagaaa----taatgtagatgatgggctgatgggtggagcaaacaaccatggcacatgtatacctgtgtaacaaactggcacgttttgcacatatattccagaacttaaagtataataag-----aaaaaaaaaaAAaaaggaaaaagaaggaaagaaagaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2101866 232 + 4244037 atggacacagggaggggaacatcacacactggggcctgttggggggtggggggttaggggagggatagcattaggagaaa----taatgtagatgatgggctgatgggtggagcaaaccaccatggcacatgtatacctatgtaacaaacttgcacgttctgcacatatattccagaacttaaagtataataaggaaaaaaaaaaaaaaaaaaaggaaaaagaaggaaagaaagaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2124016 229 + 4569836 atggacacagggaggggaacatcacacactggggcctgttggggggtggggggctaggggagggatagcattaggagaaa----taatgtagaagatgggctgatgggtggagcaaaccaccatggcacatgtatacctatgtaacaaacttgcaggttctgcacacatatttcggaacttaaagtataataag---aaaaaaaaaaaaaaaaaggaaaaagaaggaaagaaagaa i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1807300 212 + 3513951 atggacatagggagggggatatcacacactggggcctgtctggcagtggagggtta-gggagggatagcattaggagaaatacctaatgtacatgatgggttgataggtgtagcaaaccaccatggcgtgtgaatacctatataacaaacctgcacattctgcacatgtatcctagagcttaaaat----taaa--------------aaaaaaaaaaaga----aaaaagaaga- i saiBol1.JH378271 C 0 I 1 s aotNan1.NW_018502359v1 6970929 218 - 7032639 atggtc--aaggagggggacatcacacactggggtctatctggcagtggggggcta-gggagggatagcattaggagaaatacctaatgtagatgatgggttgataggtgtagcaaaccaccgtggcatgtgaatacctatataacaaacctgcatgttctgcacatgtatcctagagcttaaagtagaataaa--------------aaaaaaaaaaagaaaggaaaaagaaga- i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e cebCap1.NW_016107730v1 1856219 193 + 1920343 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=1607052.000000 s hg38.chr17_GL383564v2_alt 79251 260 + 133151 aaaaacagagtccctgaccatgacaggatgggaggtcagacatgcctcagtatgccccctccttattaacttttaaccagaattctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcctttatcacctttagcccatcatctgaagctgtgactggattccttcctcccgccttttgcagtttcaacacagcaaccaactggctggcattccttcctgataagagaccaccaacc s panTro5.chr17 16265849 256 + 83181570 aaaaacagagtccctgaccatgacaggatgggaggtcagacatgcctcagtatgccccctccttattaacttttaaccagaattctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcctttatcaccttgagcccatcatctgaagctgtgactggattccttcctcccgccttctgcagtttcaacacagcaacc----gactggcattccttcctgataagagaccaccaacc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16173306 256 + 83442489 aaaaacagagtccctgaccatgacaggatgggaggtcagacatgcctcagtatgccccctccttattaacttttaaccagaattctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagacgaatcattcctttatcaccttgagcccatcatctgaagctgtgactggattccttcctcccgccttctgcagtttcaacacagcaacc----gactggcattccttcctgataagagaccaccaacc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4008335 256 + 4267968 aaaaacagagtccctgaccatgacaggatgggaggtcagacatgcctcagtatgccccctccttattaacttttaaccagaattctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagataaatcattcctttatcacctttagcccatcatctgaagctgtgactggattccttcctcccgccttttgcagtttcaacacagcaacc----gactggcattccttcctgataagagaccaccaacc i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30060827 256 - 77216781 aaaaacagagtccctgaccatgacaggatgggagatcagacatgcctcagtatgccccttccttattaacctttaacctgaatcctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcctttatcacctttagcccatcatctgaagctgtgactggattccttcctcctcccttttgcggtttcaacacagcaacc----gaccagcattccttcctgataagagaccaccaacc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973440 256 - 80997621 aaaaacagagtccctgaccatgacaggatgggagatcagacatgcctcagtatgccccttccttattaacctttaacctgaatcctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcctttatcacctttagcccatcatctgaagctgtgactggattccttcctcctcccttttgcggtttcaacacagcaacc----gaccagcattccttcctgataagagaccaccaacc i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1917071 256 - 8458610 aaaaacagagtccctgaccatgacaggatgggagatcagacatgcctcagtatgccccttccttattaacctttaacctgaattctttcccaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcctttatcacctttagcccatcatctgaagctgtgactggattccttcctcctcccttttgcggtttcaacacagcaacc----gaccagcattccttcctgataagagaccaccaacc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64872560 256 + 75148670 Gaaaacagagtccctgaccatgacaggacgggagatcagacatacctcagtatgccccttccttattaacctttaacctgaattctttcctaaggagtaagcagaaaccagctctggaaaacaagaaacagatgantcattcctttatcgcctttagcccatcatctgaagctgtgactggattccttcgtcctcccttctgcggtttcaacacagcaacc----gaccagcattccttcctgataaaggaccactaacc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2102098 256 + 4244037 aaaaacagagtccctgaccatgacaggatgggagatcagacatgcctcagtatgccccttccttattaacctttaacctgaattctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcttttatcacctttagcccatcatctgaagctgtgactggattccttcctcctcccttttgcggtttcaacacagcaacc----ggccagcattccttcctgataagagaccaccaacc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2124245 256 + 4569836 aaaatcagagtccctgaccatgacaggacgggagatcagacatgcctcagtatgccccttccttattaacctttaacctgaattctttcctaaggagtaagcagaaaccagctctggaaaataagaaacagatgaatcattcctttatcacatttagcccatcatctgaagctgtgactagattccttcctcctcccttttgtggtttcagcacagcaacc----gactggcattccttcctgataagagaccaccaacc i colAng1.NW_012122154v1 C 0 I 8 s saiBol1.JH378271 1807513 241 + 3513951 --aaaaagagtccctgaccaagacaggataggaggtcagacatgcctcagtatgtcccttccttattaacctttaaccagaattctttcctaaggagtaagcagaaaccagctccagaaaataagaaacaggtgaagccctccttc---------agccaatcatctgaagctgtgaccgga----ttcatcctcctttctgcagtttcaacacaacagcc----caccagcattccttcctgagaagggaccagcaacc i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1856412 243 + 1920343 aaaaaaagagtccctgaccaagacaggatgggaggtcagacatgcctcagtatgccccttccttattaacctttaaccagaattctttcctaaggtgtaagcagaaaccagctccggaaaataagaaacagatgaatctttccttc---------agccaatcatctgaagctgtgaccgga----ttcgtcctcccttttgcagtttcaacacaagaacc----caccagcgttccttcctgataagggaccacaaacc i cebCap1.NW_016107730v1 I 193 C 0 s aotNan1.NW_018502359v1 6971147 242 - 7032639 aaaaaaagagtccctgaccaagacacgatgggaggtcagacatgtcccagtatgccccttctttattaacatttaaccagaattctttcctaaggagtaagcagaaaccagctccagaaaataagaaacagatgaacccttccttc---------agccagtcatctgaagctgtgacctga----ttcatcctcccttttgcagtttcaacacaacagcc----caccagcgttccttcctgataaggga-caccaacc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=55037.000000 s hg38.chr17_GL383564v2_alt 79511 12 + 133151 atggagtggtct- s panTro5.chr17 16266105 12 + 83181570 atggagtggtct- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16173562 12 + 83442489 atggagtggtct- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4008591 12 + 4267968 atggagtggtct- i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30061083 12 - 77216781 atggagtggtct- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973696 12 - 80997621 atggagtggtct- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1917327 12 - 8458610 atggagtggtct- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64872816 12 + 75148670 atggagtggtct- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2102354 12 + 4244037 atggagtggtct- i manLeu1.NW_012106252v1 C 0 C 0 s saiBol1.JH378271 1807754 13 + 3513951 acggagtggttct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1856655 13 + 1920343 atggagtggttct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6971389 13 - 7032639 acggagtggttct i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2124501 8 + 4569836 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=2607246.000000 s hg38.chr17_GL383564v2_alt 79523 396 + 133151 ggccagtctacagaggatgtgcggtgagggttttc----acatcctctgcctcacctttcaacatcagagggccaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctcaattgcacatgcttacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtgcatttggccacctcactcagcatacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctacgcttcccagcttgcaggatggtcagcctggaggctgcagccttttatgagaaataaagctctcctttccaactttattaatcttgtgatttttcagttggc s panTro5.chr17 16266117 396 + 83181570 ggccagtctacagaggatgtgcggtgagggttttc----acatcctctgcctcacctttcaacatcagagggccaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctcaattgcacatgcttacatttgtcttttcataaatattaatgactcctcctgtagcttattaaatagtgcatttggccacctcactcagcatacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctatgcttcccagcttgcaggatggtcagcctggaggctgcagccttttatgagaaataaagctctcctttccaactttattaatcttgtgatttttcagctggc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16173574 396 + 83442489 ggccagtctacagaggatgtgcggtgagggttttc----acatcctctgcctcacctttcaacatcagagggccaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctcaattgcacatgcttacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtgcatttggccacctcactcagcatacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctatgcttcccagcttgcaggatggtcagcctggaggctgcagccttttatgagaaataaagctctcctttccaactttattaatcttgtgatttttcagctggc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4008603 396 + 4267968 ggccagtctacagaggatgtgcggtgagggttttc----acatcctctgcctcacctttcaacatcagagggccaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctcaattgcacatgcttacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtgcatttggccacctcactcagcatacgttcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctacgcttcccagcttgcaggatggtcagcctggaggctgcagccttttatgagaaataaagctctcctttccaactttattaatcttgtgatttttcagttggc i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30061095 396 - 77216781 ggccagtctacaaaggatgtgcagtgggggttttc----acatcctctgcctcacctttcaacatcagagggtcaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctaaattgcacatgcctacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtatatttggccacctcactcagcatacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctatgcttcccaacttgcaggatggccagcctgggggctgcagccttttatgagaaataaaggtctcctttccaactttatgaatcttgtgatttttcagttggc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27973708 396 - 80997621 ggccagtctacaaaggatgtgcagtgggggttttc----acatcctctgcctcacctttcaacatcagagggtcaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctaaattgcacatgcctacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtatatttggccacctcactcagcatacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctatgcttcccaacttgcaggatggccagcctgggggctgcagccttttatgagaaataaaggtctcctttccaactttatgaatcttgtgatttttcagttggc i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1917339 396 - 8458610 ggccagtctacagaggatgtgcagtgggggttttc----acatcctctgcctcacctttcaacatcagagggtcaaaaactccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctaaattgcacatgcctacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtatatttggccgcctcactcggcatacattcctttctcacatttccctccctcagaatgcttactcttggcttctgccagaggctatgcttcccgacttataggatggccagcctgggggctgcagccttttatgagaaataaaggtctcctttccaactttatgaatcttgtgatttttcagttggc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64872828 396 + 75148670 ggccagtctacagaggatgtgcagtgggggttttc----acatcctctgcctcacctttcaacatcagagggtcaaaaactccatccttggatcatgctaatgccaccatttatgaacatgagacccatgaagaggcatgaagctaaattgcacatgcttacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtatatttggccgcttcactcagcatacattcctttctcacatttccctccctcaaaatgcttattcttggcttctgccagaggctacgcttcccaacttgcaggatggccggcctgggggctgcagccttttacgagaaataaaggtctcctttccaactttatgaatcttgtgatttttcagttggc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2102366 396 + 4244037 ggccagtccacagaggatgtgcagtgggggttttc----acatcctctgcctcacctttcaacatcagagggtcaaaatctccatccttggatcatgctaatgccaccatttgtgaacatgcgacccatgaagaggcatgaagctaaattgcacatgcttacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtatatttggccacctcactcagcacacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctatgcttcccgacttataggatggccagcctgggggctgcagccttttatgagaaataaaggtctcctttccaactttatgaatcttgtgatttttcagttggc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2124509 396 + 4569836 ggccagtctacagaggatgtgcagtgggagttttc----acatcctctacctcacctttcaacattagagggtcaaaaactccatccttggatcatgctaatgctaccatttgtgaacatgcgacccatgaagaggcatgaagctaaattgcacatgcttacatttgtcttttcataaatattcatgactcctcctgtagcttattaaatagtatatttggccacctcactcagcatacattcctttctcacatttccctccctcaaaatgcttactcttggcttctgccagaggctatgcttcccaacttgtaggatggccagcctgggggctgcagccttttacgagaaataaaggtctcctttccaagtttatgaatcttgtgatttttcagttggc i colAng1.NW_012122154v1 I 8 C 0 s saiBol1.JH378271 1807767 396 + 3513951 gaccagtctacagaggacgtgcagtgagggttttcccatccatcccctgcctcacctttcgacatcagagggccaaaaactccatacttggatcatgctaatgccaccgtttttgaacatgtgaccgatgaagaggcatgaagctcgattgcacatatttatgtttgtcttttcataa----tcatgactcctctcacagcttattaaatagtgcacttggccacctagctcagcatacgttcctttctcacattttcccccttcaagctgcttactcttggcttctgccagaggctacatttcccagcttgcaggatggccaacctggagtctccagcctttgatgagaaataaagctctcttttccaactttacgaatcttgtgatttttcagttggc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1856668 392 + 1920343 gaccagtctacagaggaggtgccgtgagggttttc----ccatcccctgccttaccttttgacatcagacggccaaaaaccccatccttgggtcatgctaatgccaccattttcgaacatgtgacccatgaagagacatgaagctcaattgcacatgcttacatttgtcttttcataa----tcatgactccccttatagcttaataaatattacacttggccacctagctcagtatacattcctttctcacattttcccccttcaagctgcttactcttggcttctgccagaggctacgtttcccagcttgcaggatggccaaccgggagtctccaggcttttatgagaaataaagctctctcttccaactttatgaatcttgtgatttttcagttggc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6971402 392 - 7032639 gaccagtctacagaggatgtgcagtgagatttttc----ccatcccctgcctcacctttcgacatcagagggccaaaaactccatccttggatcatgctaatgccaccatttttgaacatgtgacccatgaagaggcatgaagctcaattgcacaggcttccatttgtcttttcataa----tcacgactcctcttatagcttattaaatagtacacttggccacctagctcagcatacattcctttctcacattttcccccttcaaggtgcttactcttggcttctgccagagactacatttcccagcttgcaggatggccaacccggagtctccagccttttatgagaaataaacctctcttttccaactttatgaatcttgtgatttttcagttggc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402394 0 + 61074082 C e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=160478.000000 s hg38.chr17_GL383564v2_alt 79919 26 + 133151 aCTACTTAGCTTAC--------TGACTTGGCAAG s panTro5.chr17 16266513 26 + 83181570 aCTACTTAGCTTAC--------TGACTTGGCAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16173970 26 + 83442489 aCTACTTAGCTTAC--------TGACTTGGCAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4008999 26 + 4267968 aCTACTTAGCTTAC--------TGACTTGGCAAG i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30061491 26 - 77216781 aCTACTCAGCTTAC--------TGACTTGGCAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27974104 26 - 80997621 aCTACTCAGCTTAC--------TGACTTGGCAAG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1917735 26 - 8458610 aCTACTCAGTTTAC--------TGACTTGGCAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64873224 26 + 75148670 aCTACTCAGCTTAC--------TGACTTGGCAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2102762 26 + 4244037 aCTACTCAGTTTAC--------TGACTTGGCAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2124905 26 + 4569836 aCTACTCAGCTTAC--------TGACTTGGCAAG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1808163 18 + 3513951 CCTACTCAGCTTCC--------TGAC-------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1857060 26 + 1920343 aCTACTCAGCTTCC--------TGACCTGGCAAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6971794 26 - 7032639 aCTACTCAGCTTAC--------TGACTTGGCAAG i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21402394 26 + 61074082 ACTACTCACCTCACATAAGGGATGAC-------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e nomLeu3.chrUn_GL397460_1 1987699 3613 - 2193130 M a score=531003.000000 s hg38.chr17_GL383564v2_alt 79945 75 + 133151 ATACGCTGGCTGTAAAATTCACCATGAC---ATGATGACCTGCAATTGGCCATCTAGTGTGACAAGGCAATGTTGCCA s panTro5.chr17 16266539 75 + 83181570 ATACGCTGGCTGTAAAATTCACCATGAC---ATGATGACCTGCAATTGGCCATCTAGTGTGACAAGGCAATGTTGCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16173996 75 + 83442489 ATACGCTGGCTGTAAAATTCACCATGAC---ATGATGACCTGCAATTGGCCATCTAGTGTGACAAGGCAATGTTGCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4009025 75 + 4267968 ATACGCTGGCTGTAAAATTCACCATGAC---ATGATGACCTGCAATTGGCCATCTAGTGTGACAAGGCAATGTTGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1991312 78 - 2193130 ATACACTGGCTGTAAAATTCACCATGACATGATGATGACCTGCAACTGGCCATCTAGCGTGACAAGGCAATATTGCCA i nomLeu3.chrUn_GL397460_1 M 3613 C 0 s rheMac8.chr16 30061517 78 - 77216781 ATACACTGGCTGAAAAATTCACCATGACATGATGATGACCTGCGATTGGCCATCTAGTGTGACAAGGCAATGCTGCCG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27974130 78 - 80997621 ATACACTGGCTGAAAAATTCACCATGACATGATGATGACCTGCGATTGGCCATCTAGTGTGACAAGGCAATGCTGCCG i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1917761 78 - 8458610 ATACACTGGCTGAAAAATTCACCATGACATGAAAATGACCTGCGATTGGCCATCTAGTGTGACAAGGCAATGCTGCCG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64873250 78 + 75148670 ATACACTGGCTGTAAAATTCACCATGACATGATGATGACCTGCGATTGGCCATCTAGTGTGACAAGGCAATGCTGCCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2102788 78 + 4244037 ATACACTGGCTGAAAAATTCACCATGACATGATAATGACCTGCGATTGGCCATCTAGTGTGACAAGGCAATGCTGCCG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2124931 78 + 4569836 ATACACTGGCTGTAAAATTCACCATGACATGATGATGACCTGCGATTGGCCATCTAGTGTGACAAGGCAATGCTGCCG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1808181 56 + 3513951 -----CTGGCTGTAAAATTCACCATGATATTGTTACAATC-----------------TGTGACAAGGCAATGCTGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1857086 78 + 1920343 ATACACTGGCTGTAAAATTCACCACGATATTATTACAGTCTGTGATCAGCCATCTAGTGTGACAAGGCAATGCTGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6971820 78 - 7032639 AAAAACTGGCTGTAAAATTCACCACGATATTATTACGATCTGTGATTGGACATCTAGTGTGACAAGGCAATGCTGCTG i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21402420 69 + 61074082 ACACATGGGCTG--AAGCCTACTGCCA-------ATGATCTATGATTCACGACTTGGTGTAACAAGGCACTGCTGTTA i canFam3.chr9 C 0 I 5048 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=2880147.000000 s hg38.chr17_GL383564v2_alt 80020 397 + 133151 ATGAAATGTGGGTATAAT-CTAGCTTGTCTCACTTCATAATTTTAAAGTT-TCTAGTGAAATTAAATATTTAAAAAATCTTTTTATTGGTCATTCATGTGTCTTCTCTATAAA-TCAattcaatccaatgtata----atcattgaatgcttacgatggtgcctgttgggcagagcactgaacaaaacaaagacctgctctaagaagcctactttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgactgtgtcaagcaataagtgctgagaggaaatataaagcaaggaaagggaataggaagtgGAAACTTTTGGATAAGGTGGTGAGGGcactctatgtctgatgaggagaaatagggtttaatctatttacatgtaattttattactg s panTro5.chr17 16266614 397 + 83181570 ATGAAATGTGGGTATAAT-CTAGCTTGTCTCACTTCATAATTTTAAAGTT-TCTAGTGAAATTAAATATTTAAAAAATATTTTTATTGGTCATTCATGTGTCTTCTCTATAAA-TCAattcaattcaatgtata----atcattgaatgcttacgatggtgcctgttgggcagagcactgaacaaaacaaagacctgctctaagaagcctactttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgactgtgtcaagcaataagtgctgagaggaaaaataaagcaaggaaagggaataggaagtggaaacttttggataaggtggtcagggcactctatgtctgatgaggagaaatagggtttaatctatttacatgtaattttattactg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16174071 395 + 83442489 ATGAAATGTGGGTATAAT-CTAGCTTGTCTCACTTCATAATTTTAAAGTT-TCTAGTGAAATTAAATATTT-AAAAATATTTTTATTGGTCATTCATGTGTCTTCTCTATAAA-TCAattcaattcaatgtata----atcattgaatgcttacgatggtgcctgttgggcagagcactgaacaaaacaaagacctgctctaagaagcctactttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgactgtgtcaagcaataagtgctgagaggaaa-ataaagcaaggaaagggaataggaagtggaaacttttggataaggtggtcagggcactctatgtctgatgaggagaaatagggtttaatctatttacatgtaattttattactg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4009100 396 + 4267968 ATGAAATGTGGGTATAAT-CTAGCTTGTCTCACTTCATAATTTTAAAGTT-TCTAGTGAAATTAAACATTTAAAAAATCTTTTTATTGGTCATTCATGTGTCTTCTCTATAAA-GCAattcaattcaatgtata----atcattgaatgcttacgatggtgcctgttgggcagagca-tgaacaaaacaaagacctgctctaagaagcctactttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgactgtgtcaagcaataagtgctgagacgaaaaataaagcaaggaaagggaataggaagtggaaactttttgataaggtggtcagggcactctatgtctgatgaggagaaatagggtttaatctatttacatgtaattttattactg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1991390 396 - 2193130 ATGAAATGTGGGTACAAT-CTAACTTGTCTCACTTTGTAATTTTAAAGTT-TCTAGTGAAATTAAACATTTAAAAAATCTTTTTATTGGTCATTCATGTGTCTTCTCTATAAattcagttcaattcaacatata----atcattgaatgcttacaatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttactttcaagtggaagaagacagacaataaaa--aggcaaacaagcatgactgtgtcaagcaataagtgctgagaggaaaaataaagcaaggaaagggaataggaggtggaaacttttggataaggtggtcagggCACTCTGTGTCTGATGAGGAGAaatagggtttaatctatttacatgtaattttattactg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30061595 395 - 77216781 ATGAAATGTGGGTACAATGCTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGTGAAATTAAACATTT-AAAAATATTTTTGTTGGTCATTCATGTGTCTTCTCTATAAATttaattcaattcaacatataatccatcattgaatgcttatgatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttattttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgaccatgtcaagcaataagtgctgagaggaaaaat------aggaaagggactaggagatggaaa-ttttggataaggtggtcagggCACTCTATGTCTGATGTGGAGAaataggatttactctatttacatgtaattttattactg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27974208 395 - 80997621 ATGAAATGTGGGTACAATGCTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGTGAAATTAAACATTT-AAAAATATTTTTGTTGGTCATTCATGTGTCTTCTCTATAAATttaattcaattcaacatataatccatcattgagtgcttatgatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttattttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgaccatgtcaagcaataagtgctgagaggaaaaat------aggaaagggactaggaggtggaaa-ttttggataaggtggtcagggCACTCTATGTCTGATGTGGAGAaataggatttactctatttacatgtaattttattactg i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1917839 395 - 8458610 ATGAAATGTAGGTACAATGCTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGTGAAATTAAACATTT-AAAAATATTTTTGTTGGTCATTCATGTGTCTTCTCTATAAATttaattcaattcaacatataatccatcattgagtgcttatgatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttacttttaagtggaagaagacagacaataaaaagaggcaaacaagcatgaccatgtcaagcaataagtgctgagaggaaaaat------aggaaagggactaggaggtggaaa-ttttggataaggtggtcagggCACTCTATGTCTGATGTGGAGAaataggatgtagtctatttacatgtaattttattactg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64873328 392 + 75148670 ATGAAATGTGGGTACAATGCTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGTGAAATGAAACATTT-AAAAATATTTTTGTTGGTCATTCATGTGTCTTCTCTATAAATttaattcaattcaacatata----atcattgagtgcttatgatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttactttcaagtagaagaagacagacaatgaaaagaggcaaacaagcatgaccatgtcaagcaataagtgctgagaggaaaaat------aggaaagggaataggaggtggaaacttttggataaggtggtcagggCACTCTATGTCTGATGTGGAGAaataggatttactctatttacatgtaattttattactg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2102866 395 + 4244037 ATGAAATGTGGGTACAATGCTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGTGAAATTAAACATTT-AAAAATATTTTTGTTGGTCATTCATGTGTCTTCTCTATAAATttaattcaattcaacatataatccatcattgagtgcttatgatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttactttcaagtggaagaagacagacaataaaaagaggcaaacaagcatgaccatgtcaagcaataagtgctgagaggaaaaat------aggaaagagactaggaggtggaaa-ttttggataaggtggtcagggCACTCTATGTCTGATGTGGAGAaataggatttactctatttacatgtaattttattactg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2125009 392 + 4569836 ATGAAATGTGGGTACAATGCTAGCTTGTCTCACTTTGTAATTTAAAAATT-TCTAGTGAAATTAAACATTT-AAAAATATTTTTGTTGGTCATTCATGTGTCTTCTCTATAAATttaattcaattcaacatata----atcattgagtgcttatgatggtgcctgttgggcagagcagtgaacaaagcaaagacctgctctaagaagcttactttcaagtggaagaagacagacaataaaaagaggcaagcaagcatgaccatgtcaagcagtaagtgctgagaggaaaaat------aggaaagggaataggaggtggaaacttttggataaggtggtcagggCACTCTATGTCTGATGTGGAGAaataggatttactctatttacatgtaattttattactg i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1808237 395 + 3513951 ATGAAATGTGGGTACCGTACTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGTGAAATTAAACATTT-AAAAACGTTTTTATTGGTCATTCATGTTTCTTCTCTATAAattcaattcaattcaacatata----atcattgagtgcttatgatggtgccggctgggcagagcagtgaacaaagcaaagaccagctctaagaagtttactttcaagtgggaggaggcagacaat-aaaaggggcaaacaagtatgaccatgtcaagcaataagtgctgagaggaaaaat-aagcaagggaagagaaaaggaggtggaaacttttggataaggaggtcagggCACTCTA-GTCTGATGAGGAGAaatagggtttaatctatttacatttaattttattactg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1857164 396 + 1920343 ATGAAATGTGGGTACAATACTAGCTTGTCTCACTTTGTAATTTTAAAACCGGAAAATGAAATTAAACATTT-AAAAATGTTTTTATTGGTCATTCATGTTTCTTCTCTATAAattcaattcaattcaacatata----atcattgagtgcttatgatggtgccggttgggcagagcagtgaacaaagcgaagacctgctctaagaagcttactttcaagtgggaggagacacacaat-aaaaagggcaaacaagcatgaccacgtcaagcaataagtgctgagaggaaaagt-aagcaagggaagagaacaggaggcggaaacttttggataaggtggtcagggCACTCTA-GTCTGATGAGGAGAaatagggtttaatctatttacatttcattttattactg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6971898 396 - 7032639 ATGAAATGTGGGTACAATACTAGCTTGTCTCACTTTGTAATTTTAAAATT-TCTAGGGAAATTAAACATTG-AAAAATGTTTTTATTGGTCATTCATGTTTCTTCTCTATAAattcaattcaattcaacatata----atcactgagtgcttatgatggtgccggctgggcagagcagtgaacaaagcaaagacctgctctaagaagcttactttcaagtgggaggagacagacaataaaaaggggcaaacaagcatgaccatgtcaagcaatgagtgctgagaggaaaaat-aagcaagggacaagaataggaggtggaaacttttggataaagtggtccgggCACTCTA-GTCTGATGAGGAGAAATAGGGTTTAATCTAGTTACATTTAATTTTATTACTG i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e calJac3.chr5 113213715 0 + 159171411 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=71394.000000 s hg38.chr17_GL383564v2_alt 80417 10 + 133151 actttttgga s panTro5.chr17 16267011 10 + 83181570 actttttgga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16174466 10 + 83442489 actttttgga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4009496 10 + 4267968 actttttgta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1991786 10 - 2193130 actttttgga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30061990 10 - 77216781 acttcttgga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27974603 10 - 80997621 acttcttgga i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1918234 10 - 8458610 acttcttgga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64873720 10 + 75148670 acttttggga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2103261 10 + 4244037 acttcttgga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2125401 10 + 4569836 actttttgga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46098289 10 - 159171411 ATTCTTGGGG i calJac3.chr5 I 10948 C 0 s saiBol1.JH378271 1808632 10 + 3513951 acttttagga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1857560 10 + 1920343 acttttgggg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6972294 10 - 7032639 ACTTTTGGGG i aotNan1.NW_018502359v1 C 0 I 226 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=1779917.000000 s hg38.chr17_GL383564v2_alt 80427 225 + 133151 cttattt-taaaaatcttactttgtcctttccattaaggatgatttttttttg------------------ttgcttattgtttcctcagttcctgacacctgtggattgatcttgttttctttgtt-cccccttttaatatgtgttcttaatttttaaatgtgcacacttgacttagcactatctaatttaatctctttcttcttgcat-aaaaacaagatccatagaaG------------ATGtttttgtttttt s panTro5.chr17 16267021 224 + 83181570 cttattt-ttaaaatcttactttgtcctttccattaaggatga-ttttttttg------------------ttgcttattgtttcctcagttcctgacacctgtggattgatcttgttttctttgtt-cccccttttaatatgtgttcttaatttttaaatgtgcacacttgacttagcactatctaatttaatctctttcttcttgcat-aaaaacaagatccatagaaG------------ATGtttttgtttttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16174476 224 + 83442489 cttattt-taaaaatcttactttgtcctttccattaaggatga-ttttttttg------------------ttgcttattgtttcctcagttcctgacacctgtggattgatcttgttttctttgtt-cccccttttaatatgtgttcttaatttttaaatgtgcacacttgacttagcactatctaatttaatctctttcttcttgcat-aaaaacaagatccatagaaG------------ATGtttttgtttttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4009506 224 + 4267968 cttattt-taaaaatcttactttgtcctttccattaaggatga-ttttttttg------------------ttgcttattgtttcctcagttcctgacacctgtggattgatcttgttttctttgtt-cccccttttaatacgtgttcttaatttttaaatgtgcacacttgacttagcactatctaatttaatctctttcttcttgcgt-aaaaacaagatccgtagaaG------------ATGtttttgtttttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1991796 225 - 2193130 cttattt-taaaaatcttactttgtcctttccattaagcatgattttttttcg------------------ttgtttattgtttcctcacttcctgacacctgtggattgatcttgttttctttgtt-ccccctttcAATATGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAGCACTATCTAATTTAATCTCTTTCTTCTTGCAT-AAAAACAAGGTCCATAGAAG------------ATGtttttgtttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30062000 237 - 77216781 cttattt-ttaaaatcttactttgtcttttccattaagcatgattttttttct------------------ttgcttattgtttcctcacttcctgacacctgtggattgatctcgttttctttgtt-ccccctttTAATAAGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAACACTATCTAATTTAATCTCTTCCTTCTTGCAT-AAAAACAAGGTCCATGGAAGttttttttttttttttttttttttttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27974613 238 - 80997621 cttattt-ttaaaatcttactttgtcttttccattaagcatgattttttttct------------------ttgcttattgtttcctcacttcctgacacctgtggattgatctcgttttctttgttcccccctttTAATAAGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAACACTATCTAATTTAATCTCTTCCTTCTTGCAT-AAAAACAAGGTCCATAGAAGttttttttttttttttttttttttttt i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1918244 223 - 8458610 cttattt-ttaaaatcttactttgtcttttccattaagcatgattttttttct------------------ttgcttattgtttcctcacttcctgacacctgtggattgatctcgttttctttgtt-ccccctttTAATAAGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAACACTATCTAATTTAATCTCTTCCTTCTTGCAT-AAAAACAAGGTCCATAGAAG--------------ttttttttttttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64873730 220 + 75148670 cttattt-ttaaaatcttactttgtcttttccattaagcatgattttttttct------------------ttgcttattgtttcctcacttcctgacacctgtggattgatctcattttctttgtt-ccccctttTAATAAGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAACACTATCTAATTTAATCTCTTCCTTCTTGCAT-AAAAACAAGGTCCATAGAAG-----------------Attttttttg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2103271 224 + 4244037 cttattt-ttaaaatcttactttgtcttttccattaagcgtgattttttttct------------------ttgcttattgtttcctcacttcctgacacctgtggattgatctcgttttctttgtt-ccccctttTAATAAGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAACACTATCTAATTTAATCTCTTCCTTCTTGCAT-AAAAACAAGGTCCATAGAAG-------------tttttttttttttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2125411 242 + 4569836 cttattt-taaaaatcttactttgtcctttccattaagcatggttttttttctttgcttattgtttcctCATTGCTTATTGTTTCCTCACTTCCTGACACCTGTGGATTGATCTCATTTCCTTTGTT-CCCCCTTTTAATAAGTGTTCTTAATTTTTAAATGTGCACACTTGATTTAACACTAT-TAATTTAATCTCTTCCTTCTTGCAT-AAAAACAAGGTCCATAGAAG------------ATTTTTTTTTTTTTT i colAng1.NW_012122154v1 C 0 I 1106 s calJac3.chr5 46098299 220 - 159171411 CTTATTT-TAAAAACCTTACTTTGTACTTTCTATTAAGCATGA-CTTTTTTCT------------------TTGCTTATTGTTTCCTCACTTGCTGACACCTGTGGATTGAT---GTTTTCTTTGTT-CTT-CTTTAAATATGCGTTCTTAATTTTTAAATGTGCACACTTGATTTAGCACTCTCTAATTTAATATCTTTCTTCTTGCAT-CAAAACAAGGCCCACAGAAG------------GTGtttttgtttttt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1808642 223 + 3513951 cttatttaaaaaaaccttactttgtgctttctattaagcatgattttttttct------------------ttgcttattgtttcctcacttcctgacacctgcagattgat---gttttctttgtt-cTTGCTTTAAATACGTGTTCTCAATTTTTAAATGTGCACACTTGATTTAGCACTTTCTAATTTAATCTCTTTCTTCTTGCATAAAAAACAAGGCCCACAG-AG------------GTGtttttgcttttt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1857570 222 + 1920343 cttattt-aaaaaaccttactttgtgctttctattaagcatga-tttttttct------------------ttgcttattgtttcctcacttcctgacacctgtggattgat---gttttctttgtt-cttcctttAAATATGCATTCTTCATTTTTAAATGTGCACACTTGATTTAGCACTCTCTAATTTAATCTCTTTCTTCTTGCATAAAAAACTAGGCCCACAGAAG------------GTGtttttgtttttt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6972530 221 - 7032639 CTTATTT-TAAAAACCTTACTTTGTGCTTTCTACTAAGCATGA-TTTTTTTCT------------------TTGCTTATTGTTTCCCCACTTTCTGACACCTGTGGATTGAT---GTTTTCTTTGTT-CTTCCTTTAAATATGCGTTCTTAATTTTTAAATGTGCACACTTGATTTAGCACTCTCTAATTTAATCTCTTTCTTCTTGCATAAAAAACAA-GCCCACAGAAG------------GTGtttttgtttttt i aotNan1.NW_018502359v1 I 226 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=5414735.000000 s hg38.chr17_GL383564v2_alt 80652 779 + 133151 gtttttaagagacaggatctaactctgttacccaggctggagtgcagtggtgtaatcatagccgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccaaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcatgaatggtttaataccatcccccttggtact---gttgtcacaacggtgagtgagttctcacaagatctggttgtttaaaggtgtgtagaacctcccccactcccttgctt----------------cttctcccaccatgtgagacacctcgctgcacctttgccttccaccatgattggaagctacctgaggcttccctagaagcagaagcctctatgcttcctatacagcctgcagaactgtgaggtaattaaacttcttttctttgtaaattacctagtctcaggtatttctttatagctgtgtgagaatggattaatacaatggcccactgcagccttaacctcccagatcctgaggatcctaacctcaagtgaccctcctgcctcagtctccgaagtagctgggaccacacatgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaggtctctctatgttgcttaggctggtcttaaaatcctgggctcaagggattctctgtgttggcctcccaaagtgtagggattacaggtgtgagccactgtgcccTGTCAGAAATTTTTGTTTATGTTCTTTACTTTACTTTTT-TATCTTGGttt-----att s panTro5.chr17 16267245 753 + 83181570 gtttttaagagacaggatctaactctgttacccaggctggagtgcagtggtgtaatcatagccgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtggttccaaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcgtgaatggtttaataccatcccccttggtact---gttgtcacaacggtgagtgagttctcacaac-------------------------acctcccccactcccttgctt----------------cttctcccaccatgtgaggaacctcgctgcgcctttgccttccaccatgattggaagctacctgaggcttccctagaagcagaagcctctatgcttcctatatagcctgcagaactgtgaggtaattaaacttcttttctttgtaaattacctagtctcaggtatttctttatagctgtgtgagaatggattaatacaatggcccactgcagccttaacctcccagatcctgaggatcctaacctcaagtgaccctcctgcctcagtctccaaagtagctgggaccacacatgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaggtctctctatgttgcttaggctggtcttaaaatcctgggctcaagggattctctgtgttggcctcccaaagtgtagggattacaggtgtgagccacT-TTCCCTGTCAGAAATTTTTGTTTATGTTCTTTACTTTACTTTTT-TATCTTGGttt-----att i panTro5.chr17 C 0 C 0 s panPan2.chr17 16174700 753 + 83442489 gtttttaagagacaggatctaactctgttacccaggctggagtgcagtggtgtaatcatagccgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtggttccaaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcgtgaatggtttaataccatcccccttggtact---gttgtcacaacggtgagtgagttctcacaac-------------------------acctcccccactcccttgctt----------------cttctcccaccatgtgaggaacctcgctgcgcctttgccttccaccatgattggaagctacctgaggcttccctagaagcagaagcctctatgcttcctatacagcctgcagaactgtgaggtaattaaacttcttttctttgtaaattacctagtctcaggtatttctttatagctgtgtgagaatggattaatacaatggcccactgcagccttaacctcccagatcctgaggatcctaacctcaagtgaccctcctgcctcagtctccgaagtagctgggaccacacatgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaggtctctctatgttgcttaggctggtcttaaaatcctgggctcaagggattctctgtgttggcctcccaaagtgtagggattacaggtgtgagccacT-TTCCCTGTCAGAAATTTTTGTTTATGTTCTTTACTTTACTTTTT-TATCTTGGttt-----att i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4009730 778 + 4267968 gtttttaagagacaggatctaactctgttacccaggctggagtgcagtggtgtaatcatagccaatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccaaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcatgaatggtttaataccatcccccttggtact---gttgtcacaacagtgagtgagttcttacaagatctggttgtttaaaggtgtgtagcacctcccccactcccctgctt----------------cttctcccaccatgtgagacacctcgctgcacctttgccttccaccatgattggaagctacctgaggcttccctagaagcagaagcctctatgcttcctatacagcctgcagaactgtgaggtaattgaacttcttttctttgtaaattacctagtctcaggtatttctttatagttgtgtgagaatggatt-atacaatggcccactgcagacttaaccttccagatcctgaggatcctaacctcaagtgaccctcctgcctcagtctccgaagtagctgggaccacacatgcatgccgccatgtctggctaattttttactttttatttttgtagagacaaggtctctctatgttgcttaggctagtcttaaaatcctgggctcaagggattctctgtgttggcctcccaaagtgtagggattacaggtgtgagccactgtgcccTGTCAGAAATTTTTGTTTATGTTCTTTACTTTACTTTTT-TATCTTGGttt-----att i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1992021 763 - 2193130 gtttttaagagataggatctaactctgttacccaggctggagtgcagtggtgtaatcatagctgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccaaatgttggaggtggggcctggtgggaggtgattgaatcatgggggtaatttctcatgaatggtttaataccatcccccttggtact---gtcatcacaatggtgagtgggttctcacaagatctggttgtttaaaggtgtgtagtacctcccccattcccctgctt----------------cttctgccaccatgtgagacgcctcgctgcacctttgccttccaccatgattggaagcttcctgaggcttccctagaagcagaagcctctatgcttcctatacagcctgcagaactgtgaggtaattaaacttcttttctttgtaaattacctagtctcaggtatttctttatagcagtgtgagaatggactaatacaatggcccactgcagccttaacctcccagg----------------ctcaagtgatcctcctgcctcagcctccaaagtagctgggaccacacgtgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaggtctctctatgttgcttgggctggtcttgaaatcctgggctcaagggattctctgtgttggcctcccaaagtgtagggattacagctgtgagccactgtgcccTGTCAGAAATTTTTGTTTATGTTCTTTACTTTACTTTTT-TCCCTTGGttt-----att i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30062237 763 - 77216781 ttttttaagagacagggtctgactctgttacccaggctggagtgcagtggtgtaatcatagctgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccgaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcataaatgatttaataccatccccctcggtact---gtcgtcacaatggtgagtgagttctcgaaagatctggttgtttaaaggtgtgtagcacctaccccgctcccctgctt----------------cttttcccaccatgtgagacaacttgctgcacctttgccttccaccatgattggaagcttcctgaggcctccctagaagccgaagcctctatgtttcctatacagcctgcagaactgtgaggtaattaaacttcttttcttcgtaaattacctagtctcaagtatttctttatagcagtgtgagaatggactaatacaatgacccactacagccttaacctcccagg----------------ctcaagtgatcctcctgcctcagcctccaaagcagctgggaccacatgtgcatgccaccatgtctggctaattttttacttttt-tttttgtagagacaaagtctccctatgttgcttaggctgatcttgaactcctgggttcaagggattctctgtgttggcctcccaaactgtagggattacaggtgtgagccactgtgcccTGTCAGAAATttttatttatgttctttattttactttttatacctcggttt-----att i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27974851 764 - 80997621 ttttttaagagacagggtctgactctgttacccaggccggagtgcagtggtgtaatcatagctgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccgaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcataaatgatttaataccatcccccttggtact---gtcgtcacaatggtgagtgagttctcgaaagatctggttgtttaaaggtgtgtagcacctaccccgctcccctgctt----------------cttttcccaccatgtgagacaccttgctgcacctttgccttccaccatgattggaagcttcctgaggcctccctagaagccgaagcctctatgtttcctatacagcctgcagaactgtgagataattaaacttcttttctttgtaaattacctagtctcaagtatttctttatagcagtgtgagaatggactaatacaatgacccactacagccttaacctcccagg----------------ctcaagtgatcctcctgcctcagcctccaaagcagctgggaccacatgtgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaagtctccctatgttgcttaggctgatcttgaactcctgggttcaagggattctctgtgttggcctcccaaactgtagggattacaggtgtgagccactgtgcccTGTCAGAAATttttatttatgttctttattttactttttatacctcggttt-----att i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1918467 764 - 8458610 ttttttaagagacagggtctgactctgttacccaggccagagtgcagtggcgtaatcatagctgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccgaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcataaatgatttaataccatccccctaggtact---gtcgtcacaatggtgagtgagttctcgaaagatctggttgtttaaaggtgtgtagcgcctaccccgctcccttgctt----------------cttttcccaccatgtgagacaccttgctgcacctttgccttccaccatgattggaagcttcctgaggcctccctagaagccgaagcctctatgtttcctatacagcctgcagaactgtgaggtaattaaacttcttttctttgtaaattacctagtctcaagtatttctttatagcagtgtgagaatggactaatacaatgacccactacagccttaacctcccagg----------------cttaagtgatcctcctgcctcagcctccaaagtagctgggaccacatgtgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaagtctccctatgttgcttaggctgatcttgaactcctgggttcaagggattctctgtgttggcctcccaaagtgtaaggattacaggtgtgagccactgtgcccTGTCAGAAATTTTTATTTATGTTCTTTATTTTACTTTTTATACCTCGAttt-----att i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64873950 763 + 75148670 ttttttaagagacagggtctgactctgttacccaggccggagtgcagtggtgtaatcatagctgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccgaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcat-aatgatttaataccatcccccttggtact---gtcgtcacaatagtgcgtgagttctcgaaagatctggttgtttaaaggtgtgtagcacctaccccgctcccctgctt----------------cttttcccaccatgtgagacaccttgctgtacctttgccttccaccatgattggaagcttcctgaggcctccctagaagcagaagcctctatgtttcctatacagcctgcagaactgtgaggtaattaaacttcttttctttgtaaattacctagtctcaagtacttctttatagcagtgtgagaatggactaatacaatgacccactacagccttaacctcccagg----------------ctcaagtgatcctcctgcctcagcctccaaagtagctgggaccacatgtgcataccaccatgtctggctaattttttactttttatttttgtagagacaaagtctccctatgttgcttaggctgatcttgaactcctgggttcaagggattctctgtgttggcctcccaaactgtagggattacaggtttgagccactgtgcccTGTCAGAAATTTTTATTTATGTTCTTTATTTTACTTTTTATATCTCGGttt-----att i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2103495 764 + 4244037 ttttttaagagacagggtctgactctgttacccaggccagagtgcagtggcgtaatcatagctgatacagtttggatgttgtccttgcccaagtctcatgttgaattgtaattccgaatgttggaggtggggcctggtgggaggtgattgaatcatgggggcagtttctcataaatgatttaataccatcccccttggtact---gtcatcacaatggtgagtgagttctcgaaagatctggttgtttaaaggtgtgtagcgcctaccccgctcccttgctt----------------cttttcccaccatgtgagacaccttgctgcacctttgccttccaccatgattggaagcttcctgaggcctccctagaagccgaagcctctatgtttcctatacagcctgcagaactgtgcggtaattaaacttcttttctttgtaaattacctagtctcaagtatttctttatagcagtgtgagaatggactaatacaatgacccactacagccttaacctcccagg----------------cttaagtgatcctcctgcctcagcctccaaagtagctgggaccacatgtgcatgccaccatgtctggctaattttttactttttatttttgtagagacaaagtctccctatgttgcttaggctgatcttgaactcctgggttcaaggggttctctgtgttggcctcccaaagtgtagggattacaggtgtgagccactgtgcccTGTCAGAAATTTTTATTTATGTTCTTTATTTTACTTTTTATACCTCGGttt-----att i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46098519 758 - 159171411 gtttttaggagatggggtctggctctgttactcaggctggagtgcagtggtgtaatcacaggtgatacagtttggatgttgtccctggccaagtctcatgttgaattataatccccagtgttggagatggggcctggtgggaggtgattgaatcatgggggcagtttctcctgaatggtctaataccatccccctctgtact---gtcatcgcaatggggagtgacttctcaccagatctggttgtttaaaagcaagtagcacctctcccactcccccactcccccactcccccactccttctcccaccatgtgagaaacctcgctccacctttgccttccatcatgattggaagcttcctgaggccttcacagaagcagaagcctctgtgtttcctgtaaagcctgcacaactgtaaggcaattaaacgtcttttctttgcaaattatctattctcagctatttctttgtagcagtgtgagaatggagtaatacaatggcctaaggcagccttaacctcccagg----------------ctca-----------------agcctccatagcagctgggaccacacatgcatgacaccatgtcttgctagtttttTACtttttatttttgtagagacaaggtctccctacattgcttaggctggtcttgaactcctgggctcaagtgattctctgtgttggcctctcaaagtgtagggattgcaggtgtgagccactgtgtccTGTCAGAAATTTCTGTTTATGTTATTTACTTTAAGATT--TACCTCGGTTT-------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1808865 736 + 3513951 gtttttaggaggcagggtctggctgtgttactcaggctggagtgcagtggtataatcacagctgatacagtttggatgttgtccctgcccaagtctcatgttgaattataatccccaatgttggagatggggcctggtgggaggcgattgaatcatgggggcattttctcatgaatggtttaataccatctccctctgtact---gtcgtcgcaacgatgagtgacttctcacaagatctggttgtttaaaagcgaatagcacctcacccactccccaactc-------------------ctcccaccatgtgagaaacctcactccacctttgccttccatcatgattggaagcttcctgaggccttcacagaagcagaagcctctatgcttcctgtacagcctgcacaactgtgaggcaattaaacttcttttctttgcaaattatctattctcaggtatttatttgtagcagtgtgagaatggagtaatacaatggcctaaggcaggcttcccctcccagg----------------ctca-----------------agcctccgaagtagctgggaccacacatgcatgccaccatgtctggctagtttttcactttttatttttgtagagacaagttctccctatattgcttaggctggtcttgaactcctgggctcaagtgactctc--tgttggcctctcaaagtgtagggatagcaggtgtgagccactgtgcccTGTCAGAAATTTTTGTTTATGTTATTTAC-TTAAGCTT--TACCTTGGTTT-------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1857792 744 + 1920343 gtttttaggaggcagggtctggcggtgttactcaggctggagtgcagtggtataatcacagctgatacagtttggatgttgtccctgcccaagtctcatgttgaattgtaatccctaatgttggagatggggcctggtgggaggtgattgaatcatgggggcagtttctcatgaacagtttaataccatccccttctgcact---gtcgtcgcaacgatgagtgacttctcacaagatctggttgtttaaaagagagtagcacctcccccactcccccactc----------------cttctcccaccatgtgagaaacctcactccacctttgccttccatcatgattggaagcttcctgaagccttcacagaagcagaagcctctatgcttcctgtgcagcctgcacaactgtgaagcaattaaacttcttttctttgcaaattatctattctcaggtatttctttgtagcagtgtgagattggagtaatacaagggcctaaggcagccttaatctcccagg----------------ctca-----------------agcctccgaagtagctgggaccacacatgcatgccaccatgtctggctagttttttactttttatttttgtagagacaaggtctccctatgttgcttaggctggtcttgaactcctgggctcaagtgattctctgtgttggcctctcaaagcgtagggattgcaggtgtgagccactgtgcccTGTCAGAAATTTTTGTTTATGTTATTTACTTTAAGCTT--TACCTTGGTTTAT------ i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6972751 748 - 7032639 gtttttaggagacagggtctggctccgttactccggctggagtgcggtggtgtaatcacagttaatacagtttgggtgttgtccctgcccaagtttcatgttgaattgtaatccccagtgttggagatggggcctggtgggaggtgactgaatcatgggggcagtttctcatgaatggtttgatatcatccccctctgtactgtcgtcgtcgcaacggtgagtgacttctcacgagatctggttgtttaaaagtgagtagcacctcccccactcccccactc----------------cttctcccatcatgtaagaaacctcactccacctttgccttccatcatgattggaagcttcctgagggcttcacagaagcagaagcctctatgcttcctgtacagcctgcacaactgtgaggcaattaaacttcttttctttgcaaattatctattctcaggtatttctttgtagcagtgtgagaatggagtaatacaatggcctaaggcagccttaacctcccagg----------------ctca-----------------agcctccgaagtagctgagaccacacatgcatgccaccatgtctggctagtttttTACTTTTTAtttttgtagagacaagatctccctatattgcttaggctggtcttgaactcctgggctcaagtgattctctgtgttggcctctcaaaatgtagggattgcaggtgtgagccactgtgcccTGTCAAAAAGTTTTGTTTATGTTATTTACTTTAAGTTT--TACCttggttt--att--- i aotNan1.NW_018502359v1 C 0 I 13 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2125653 1106 + 4569836 I a score=20926.000000 s hg38.chr17_GL383564v2_alt 81431 9 + 133151 ttattattt s panTro5.chr17 16267998 9 + 83181570 ttattattt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175453 9 + 83442489 ttattattt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4010508 9 + 4267968 ttattattt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1992784 9 - 2193130 ttattattt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063000 9 - 77216781 ttatttttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27975615 9 - 80997621 ttatttttt i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1919231 9 - 8458610 ttattttta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64874713 9 + 75148670 ttatttttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2104259 9 + 4244037 ttattattt i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46099277 4 - 159171411 --ATTG--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1809601 4 + 3513951 --ATTG--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1858536 6 + 1920343 TGATTG--- i cebCap1.NW_016107730v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e aotNan1.NW_018502359v1 6973499 13 - 7032639 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2125653 1106 + 4569836 I a score=533315.000000 s hg38.chr17_GL383564v2_alt 81440 87 + 133151 a-------------------tttatt-----tattgacaggatcttgatctgttgcccaggctggagtgcagtggcatgatcatagctcactgcagcttcaccttccttgt s panTro5.chr17 16268007 87 + 83181570 a-------------------tttatt-----tgttgacaggatcttgatctgttgcccaggctggagtgcagtggcatgatcatagctcactgcagcttcaccttccttgt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175462 87 + 83442489 a-------------------tttatt-----tattgacaggatcttgatctgttgcccaggctggagtgcagtggcatgatcatagctcactgcagcttcaccttccttgt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4010517 87 + 4267968 a-------------------tttatt-----tattgacaggatcttgatctgttgcccaggctggagtgcagtggcatgatcatagctcactgcagcttcaccttccttgt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1992793 87 - 2193130 a-------------------tttatt-----tgttgacaggatcttgatctgttgcccaggctggagtgtagtggcatgatcatagctcactgcagcttcaccttcctggt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063009 111 - 77216781 atttttattttattttttattttagtttttattttgataggatcttgatctgttgcccaggctggagtgcagtggcatgaccatagctcactgcagctttaacttcctggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27975624 111 - 80997621 atttttattttattttttattttagtttttattttgataggatcttgatctgttgcccaggctggaatgcagtggcatgaccatagctcactgcagctttaacttcctggg i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1919240 99 - 8458610 atttttattttat------------tttttattttgacaggatcttgatctgttgcccaggctggagtgcagtggcatgaccatagctcactgcagctttaacttcctggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64874722 111 + 75148670 atttttattttattttttattttattttttattttgacaggatattgatctgttgcccaggctggagtgcagtggcatgaccatagctcactgcagctttaacttcctggg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2104268 87 + 4244037 a-------------------tttatt-----tattgacaggatcttgatctgttgcccagcctggagtgcagtggcatgaccatagctcactgcagctttaacttcctggg i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46099281 86 - 159171411 -------------------ATTGATT-----GACTgacaggatcttgatc-attatccagggtcaagtgcagtggtatggtcatagatcactgcaacttcaacttcctggg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1809605 87 + 3513951 -------------------ATTGATT-----GATTgacaggatcttgatctgttatccagggtagagtgcagtcgtaggattatagatcactgcagcttcaacttcctggg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1858542 87 + 1920343 -------------------ATTGATT-----GATTgacaggatcttgatctgttatccagggtagagtgcagtggtaggatcatagatcactgcagcttcaacttcctggg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6973512 87 - 7032639 -------------------attgact-----gaCTgacaggatcttgatctgttatccagggtagagtgcagtggtatgatcataggtcactgcagcttcaacttcctggg i aotNan1.NW_018502359v1 I 13 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2125653 1106 + 4569836 I a score=3121075.000000 s hg38.chr17_GL383564v2_alt 81527 379 + 133151 ctcaacctatctgcctgtcacagcctcctgagtaa-tgggactacaggcatatgccaccatgtgtagctaatta-----------a---------tttttttttttg----tagagacgag------ggtctttctatgatgcccaggctggtcgtgaactcctgggctcaagcgattctttcaccttggcctctgaaagtgctaggattgtagatgtgagtcgccATGttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcgtcctttctggttttaactttttattttctgaaatacattctttggtagtttttATAGCATTtgctatgg s panTro5.chr17 16268094 387 + 83181570 ctcaacctatctgcctgtcacagcctcccaagtaa-tgggactataggcatatgccaccatgtgtagctaatta-----------a-------tttttttttttttg----tagagacgaatttttttttttttctatgatgcccaggctggtcgtgaactcctgggctcaagcgattctcccaccttggcctctgaaagtgctaggattgtagatgtgagtcgccATGttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttttattttctgaaatacattctttggtagtttttATAGCATTtgctatgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175549 387 + 83442489 ctcaacctatctgcctgtcacagcctcccaagtaa-tgggactataggcatatgccaccatgtgtagctaatta-----------at------tttttttttttttgt---tagagacgaa--tttttttttttctatgatgcccaggctggtcgtgaactcctgggctcaagcgattctcccaccttggcctctgaaagtgctaggattgtagatgtgagtcgccATGttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttttattttctgaaatacattctttggtagtttttATAGCATTtgctatgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4010604 382 + 4267968 ctcaacctatctgcctgtcacagcctcccaagtaa-tgggactataggcatatgccaccatgtgtagctaatta-----------at------ttttttttttttttt---tagagacgag------ggtctttctatgatgcccaggctggtcgtgaactcctgggctcaagcgagtctctcaccttggcctctgaaagtgctaggattgtagatgtgagtcgccATGTTCAAtc-taccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttttattttctgaaatacattctttggtagtttttATAGCATTtgctatgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1992880 379 - 2193130 ctcaacctatctgcctgtcacagcctcccaagtaa-tgggactataggcatatgccaccgtgtgtagctaatt-------------t------tttttttttttttg----tagagacgag------ggtctttctatgatgcccaggctggtcttgaactcctggcctcaagcgattctctcacgttggcctctgaaagtgctaggattatagatgtgagtcaccacgTTCAA-CTTacattatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttctattttctgaaatacattctttggtagtttttATAGCATTTGCGATGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063120 384 - 77216781 ctcaacctatctgcctgtcacagtcttccaaggaa-tggaactataggcacatgccaccatgcatagctaatta-----------at------tttttttttttttttt--aagagatgag------ggtctttctatgatgctcagactggtcttgaactcctaggctcaagcgattctctcatcttggcctctgaaagtgctaggattatagatgtgagtcaccacAttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttctattttctgaaatacattctttgatagtttttatagcatttgctatgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27975735 386 - 80997621 ctcaacctatctgcctgtcacagtcttccaaggaa-tggaactataggcacatgccaccatgcatagctaatta-----------at------tttttttttttttttttaaagagatgag------ggtctttctatgatgctcagactggtcttgaactcctaggctcaagcgattctctcatcttggcctctgaaagtgctaggattatagatgtgagtcaccacAttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttctattttctgaaatacattctttgatagtttttatagcatttgctatgg i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1919339 386 - 8458610 ctcaacctatctgcctgtcacagtcttccaaggaa-tggaactataggcacatgccactatgcatagctaatta-----------at------tttttttttttttttttttagagatgag------ggtctttctatgatgctcagactggtcttgaactcctaggctcaagcgattctctcatcttggcctctgaaagtgctaggattatagatgtgagtcaccacAttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttctattttctgaaatacattctttgatagtttttatagcatttgctatgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64874833 394 + 75148670 ctcaacctatctgcctgtcacagtcttccaaggaa-tggaactataggcacatgccaccatgcatagctaattattattattattat------tattttttttttttt---aagagatgag------ggtctttctatgatgctcagactggtcttgaactcctaggctcaagcgattctctcatcttggactctgaaagtgctaggattatagatgtgagtcaccacAttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttagactttattcctcctttctggttttaactttctattttctgaaatacattctttgatagtttttatagcatttgctatgg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2104355 383 + 4244037 ctcaacctctctgcctgtcacagtcttccaaggaa-tggaactataggcacatgccaccatgcatagctaatta-----------at------ttttttttttttttt---tagagatgag------ggtctttctatgatgctcagactggtcttgaactcctaggctcaagcgattctctcatcttggcctctgaaagtgctaggattatagatgtgagtcaccacAttcaatcttaccttatttttatgctccaaagtttggtcattattattattatttagaattatctacatggttaccagtttatttgtttgcagtgtttcttggactttattcctcctttctggttttaactttctattttctgaaatacattctttgatagtttttatagcatttgctatgg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2126759 382 + 4569836 ctcaacctatctgcctgccacagtcttccaagtaa-tggaactataggcacatgccaccatgcatagctaatta-----------at------tttttttttttttgt----agagatgag------ggtctttctatgatgctcagactggtcttgaactcctaggctcaagcgattctctcgtcttggcctctgaaagtgctaggattatagacatgagtcaccacAttcaatcttaccttatttttatgctccaaaatttggtcattattattattatttagatttatctacatggttaccagtttatttgtttgcagtgtttcttggactttatttctcctttctggttttaactttctattttctgaaatacattctttgatagtttttatagtatttgctatgg i colAng1.NW_012122154v1 I 1106 C 0 s calJac3.chr5 46099367 379 - 159171411 cttaagctatccccctgttgcagactttcaagtaattgggaccataagcacatgccaccatgcctagctaatta-----------ac-----------tttttttttttaatagagacgag------ggtctttctatgatgcccaggctggtcttgaactcctgggctcaagcagtcctctcaccttggcctctaacagtactaggattatagatgtgaatcaccatgtccagccTTACCTTATTTTTATGCTCCAAAATTTGgtc---attattattatttagaattacctacatgtttacctgtgtattcgtttgcggtgtttcttggactttattcctcctttccacttttaactttctattttctgaaatacattctttggcagtttgtatagagtttgctatgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1809692 388 + 3513951 ctcaagctatccccctgttgcagcctttcaagtaattgggactataagcacatgccaccatgcctagctaatta-----------ac--cttttttttttttttttttttgtagagatgtg------ggtctttctatgatgcccaggctggtcttgaactcctgggctcaagcaattctctcaccttggcctctaaaagtgctaggattatagatgtgaatcaccacgtccagccTTaccttatttttatgctccaaaatttggtc---attattattatttagaattacctacatgtttaccagtgtatttgtttgcggtgttccttggactttattcctcctttccacttttaactttgtattatctgaaatacattctttggcagtttttATAGAGTTtgctatgg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1858629 381 + 1920343 ctaaagctatgcccctgttgcagcctttcaagtaattgggactataagcacatgccaccatgcctagctaatta-----------actttttttttttttttttttttttgtagagatgag------ggtctttctatgatgcccaggctggtcttgaactcctgggctcaagcaatcctctcaccttggcctctaaaagtgctaggattatagatgtgaatcaccacgtccagccTTTccttatttttatgctccaaaatttggtc---attattattatttagaattacctacatttttaccagtgtatt---------tgtttcttggactttattcctcctttccgcttttaactttctattttctgaaatacattctttggtagtttttATAGAATTTGCTATGG i cebCap1.NW_016107730v1 C 0 I 60 s aotNan1.NW_018502359v1 6973599 386 - 7032639 cttaagctatccccctgttgcagtctttcaagtaattgggactataagcacatgccaccatgcctagctcatta-----------ac----tttttttttttcttttttggtagagacgag------ggtctttctacgatgcccaggctggtcttgaactcccaggctcaagcaatcctctcaccttggcctccaaaagtgctaggatcatagatgtgaatcaccacgtccagccTTaccttatttttatgctccgaaatttggtc---attgttattatttagaattacctacatgtttaccagtgtatttgtttgcggtgtttcttggactttattcctcctttctgcttttaactttctattttttgaaatacattcttaggtagtttttatagagtttgctatgg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=117715.000000 s hg38.chr17_GL383564v2_alt 81906 16 + 133151 tttgaatgacacctcc s panTro5.chr17 16268481 16 + 83181570 tttgaatgacacctcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175936 16 + 83442489 tttgaatgacacctcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4010986 16 + 4267968 tttgaatgacacctcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993259 16 - 2193130 TTTAAATGACACCTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063504 16 - 77216781 tttgaatgacccctcc i rheMac8.chr16 C 0 I 1 s macFas5.chr16 27976121 16 - 80997621 tttgaatgacccctcc i macFas5.chr16 C 0 I 1 s cerAty1.NW_012006043v1 1919725 16 - 8458610 tttgaatgacccctcc i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64875227 16 + 75148670 tttgaatgacccctcc i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2104738 16 + 4244037 tttgaatgacccctcc i manLeu1.NW_012106252v1 C 0 I 54 s colAng1.NW_012122154v1 2127141 16 + 4569836 tttgaatgacccctcc i colAng1.NW_012122154v1 C 0 I 1 s calJac3.chr5 46099746 16 - 159171411 tttgagtgccccctcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1810080 16 + 3513951 tttgaatgccccctcc i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6973985 16 - 7032639 tttgaatgcccccccc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e cebCap1.NW_016107730v1 1859010 60 + 1920343 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=-7164.000000 s hg38.chr17_GL383564v2_alt 81922 3 + 133151 aa-c s panTro5.chr17 16268497 3 + 83181570 aa-c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175952 3 + 83442489 aa-c i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011002 3 + 4267968 aa-c i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993275 3 - 2193130 AA-C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063521 2 - 77216781 aa-- i rheMac8.chr16 I 1 C 0 s macFas5.chr16 27976138 2 - 80997621 aa-- i macFas5.chr16 I 1 C 0 s cerAty1.NW_012006043v1 1919742 2 - 8458610 aa-- i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64875244 2 + 75148670 aa-- i chlSab2.chr16 I 1 C 0 s colAng1.NW_012122154v1 2127158 2 + 4569836 aa-- i colAng1.NW_012122154v1 I 1 C 0 s calJac3.chr5 46099762 2 - 159171411 aa-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1810096 2 + 3513951 aa-- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6974001 3 - 7032639 aaa- i aotNan1.NW_018502359v1 C 0 I 51 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e cebCap1.NW_016107730v1 1859010 60 + 1920343 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e manLeu1.NW_012106252v1 2104754 54 + 4244037 I a score=27192.000000 s hg38.chr17_GL383564v2_alt 81925 23 + 133151 cattcactactacttaaaccatt s panTro5.chr17 16268500 23 + 83181570 cattcactactacttaaaccatt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175955 23 + 83442489 cattcactactacttaaaccatt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011005 23 + 4267968 cattcactactacttaaaccatt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993278 23 - 2193130 CATTCAATACTATGTAAACCATT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063523 16 - 77216781 -----acttgtgttcaaattt-- i rheMac8.chr16 C 0 I 30 s macFas5.chr16 27976140 16 - 80997621 -----acttgtgttcaaattt-- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1919744 16 - 8458610 -----acttgtgttcaaattt-- i cerAty1.NW_012006043v1 C 0 I 35 s chlSab2.chr16 64875246 16 + 75148670 -----acttgtgttcaaattt-- i chlSab2.chr16 C 0 I 36 s colAng1.NW_012122154v1 2127160 16 + 4569836 -----acttgtgttcaaattt-- i colAng1.NW_012122154v1 C 0 I 36 s calJac3.chr5 46099764 17 - 159171411 ----aactcatgttcaaattt-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1810098 17 + 3513951 ----aactcatgttcaaactt-- i saiBol1.JH378271 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e aotNan1.NW_018502359v1 6974004 51 - 7032639 I e cebCap1.NW_016107730v1 1859010 60 + 1920343 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e manLeu1.NW_012106252v1 2104754 54 + 4244037 I a score=5005.000000 s hg38.chr17_GL383564v2_alt 81948 11 + 133151 cactactactt---------- s panTro5.chr17 16268523 11 + 83181570 cactactactt---------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175978 11 + 83442489 cactactactt---------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011028 11 + 4267968 cactactactt---------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993301 11 - 2193130 CACTACTACTT---------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27976156 11 - 80997621 aattgccattg---------- i macFas5.chr16 C 0 I 19 s calJac3.chr5 46099781 21 - 159171411 aattgccaaggtgttggtatt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1810115 21 + 3513951 aattgccaatgtgttggtatt i saiBol1.JH378271 C 0 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e aotNan1.NW_018502359v1 6974004 51 - 7032639 I e cebCap1.NW_016107730v1 1859010 60 + 1920343 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2127176 36 + 4569836 I e manLeu1.NW_012106252v1 2104754 54 + 4244037 I e chlSab2.chr16 64875262 36 + 75148670 I e cerAty1.NW_012006043v1 1919760 35 - 8458610 I e rheMac8.chr16 30063539 30 - 77216781 I a score=6741.000000 s hg38.chr17_GL383564v2_alt 81959 5 + 133151 aatgg s panTro5.chr17 16268534 5 + 83181570 aatgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175989 5 + 83442489 aatgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011039 5 + 4267968 aatgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993312 5 - 2193130 AATGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063569 2 - 77216781 ---ga i rheMac8.chr16 I 30 I 3 s macFas5.chr16 27976186 2 - 80997621 ---ga i macFas5.chr16 I 19 I 3 s calJac3.chr5 46099802 5 - 159171411 aagag i calJac3.chr5 C 0 I 9 s saiBol1.JH378271 1810136 5 + 3513951 aaggg i saiBol1.JH378271 C 0 I 9 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e aotNan1.NW_018502359v1 6974004 51 - 7032639 I e cebCap1.NW_016107730v1 1859010 60 + 1920343 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2127176 36 + 4569836 I e manLeu1.NW_012106252v1 2104754 54 + 4244037 I e chlSab2.chr16 64875262 36 + 75148670 I e cerAty1.NW_012006043v1 1919760 35 - 8458610 I a score=7098.000000 s hg38.chr17_GL383564v2_alt 81964 1 + 133151 t s panTro5.chr17 16268539 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175994 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011044 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993317 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063574 1 - 77216781 t i rheMac8.chr16 I 3 C 0 s macFas5.chr16 27976191 1 - 80997621 t i macFas5.chr16 I 3 C 0 s cerAty1.NW_012006043v1 1919795 1 - 8458610 t i cerAty1.NW_012006043v1 I 35 C 0 s manLeu1.NW_012106252v1 2104808 1 + 4244037 t i manLeu1.NW_012106252v1 I 54 C 0 s calJac3.chr5 46099816 1 - 159171411 t i calJac3.chr5 I 9 C 0 s saiBol1.JH378271 1810150 1 + 3513951 t i saiBol1.JH378271 I 9 C 0 s cebCap1.NW_016107730v1 1859070 1 + 1920343 t i cebCap1.NW_016107730v1 I 60 C 0 s aotNan1.NW_018502359v1 6974055 1 - 7032639 t i aotNan1.NW_018502359v1 I 51 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I e colAng1.NW_012122154v1 2127176 36 + 4569836 I e chlSab2.chr16 64875262 36 + 75148670 I a score=6556748.000000 s hg38.chr17_GL383564v2_alt 81965 780 + 133151 caagtagtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtggacttgttataaaatgagtttggcctccttttgctctctggctgtcatgctctcttgcatttacaccttctaccatgggacaatgcagcatgaaggcccccatcagataccagcatcttgatagtggccttcccagtctctagaactg-gagaaataaatttattttctttataaattatccagtgtgtggaattctgctgtagcaacacacagcagactaagaAtctataagtgacaacttctctgttattttctgaaaatgtcttttcttagtggtcactcttacatgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagcgtgttggaaatattataccattatcttctggattctgttgttgatgctgaaaagcctattgctaacctgtatttccattgttggtaattcttcta-tttttt-tctctctttgactctttctaagatcatctctttgtctttagtgttgtgcag-tttcactatgtta-ttctagggatggctttggtttagttttcctacttaggacttatgtgcttcttgattgattcatgtatttcaatacccgtggaaaattctcagccattacattttttc-aatattacttatatcttatactccattttctccttctgaattccttttttt---aaaaaatagcttcactgaagta----taatgtatc s panTro5.chr17 16268540 779 + 83181570 caagtagtgataaggccatgagaacactgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggcttgttataaaatgagtttggcctccttttgctctctggctgtcatgctctcttgcatttacaccttctaccatgggacaatgcagcatgaaggcccccatcagataccagcatcttgatattggtcttcccagtctctagaactg-gataaataaatttattttctttataaattatccagtgtgtggaattctgctgtagcaacacacagcagactaagaAtctataagtgataacttctctgttattttctgaaaatgtcttttcttagtggtcactcttacatgatg-gtttagtttgtataaaattctaggttggcagctcttttccttcagcgtgttggaaatattataccattatcttctggattctgttgttgatgctgaaaagcctattgctaacctgtatttccattgttggtagttcttcta-tttttt-tctctg--tgactgtttctaagagcatcggtttgtctttagtgttgtgcag-tttcactatgttatttctacggatggctttggtttagttttcctacttaggacttatgtgcttcttgattgattcatgtatttcaatacccgtggaaaattctcagccattacattttttt-aatattacttatatcttatactccattttctccttctgaattccttttttt---aaaaaatagcttcactgaagta----taatgtatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16175995 779 + 83442489 caagtagtgataaggccatgagaacactgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggcttgttataaaatgagtttggcctccttttgctctctggctgtcatgctctcttgcatttacaccttctaccatgggacaatgcagcatgaaggcccccatcagataccagcatcttgatattggtcttcccagtctctagaactg-gataagtaaatttattttctttataaattatccagtgtgtggaattctgctgtagcaacacacagcagactaagaAtctataagtgataacttctctgttattttctgaaaatgtcttttcttagtggtcactcttacatgatg-gtttagtttgtataaaattctaggttggcagctcttttccttcagcgtgttggaaatattataccattatcttctggattctgttgttgatgctgaaaagcctattgctaacctgtatttccattgttggtagttcttcta-tttttt-tctctg--tgactgtttctaagagcatctgtttgtctttagtgttgtgcag-tttcactacgttatttctacggatggctttggtttagttttcctacttaggacttatgtgcttcttgattgattcatgtatttcaatacccgtggaaaattctcagccattacattttttt-aatattacttatatcttatactccattttctccttctgaattccttttttt---aaaaaatagcttcactgaagta----taatgtatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011045 775 + 4267968 caagtagtgattaggccatgagaaccctgtcttcatcaatggattaatgtcattttatcatggga-gggggtagttatcatgagagtgggcttgttataaaatgagtttggcctccttttgctctctggctgtcatgctctcttgcatttacaccttctaccatgggacaatgcagcatgaaggcccccatcagataccagcatcttgatattggtcttcccagtctctagaactg-gagaaataaatttattttctttataaattatccagtgtgtggaattctgctgtagcaacacacagcagactaagaAtctataagtgataacttctctgttattttctgaaaatgtcttttcttagtggtcactcttacatgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagcgtgttggaaatattataccattatcttctggattctgttgttgatgctgaaaagcctattgctaacctgtatttccattattg----ttcttcta-ttttttctctctt--tgactgtttctaagatcatctgtttgtctttagtgttgtgcagttttcactatgttatttcta-ggatgggtttggtttagttttcctacttaggacttatgtgcttcttgattgattcatgtatttcaatacccgtggaaaattctcagccattacattttttg-aatattacttatatcttatactccattttctccttctgaattcctttttta---aaaaaatagcttcactgaagta----tattgtatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1993318 782 - 2193130 CaagtagtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggagaggaatagttatcatgagagtgggcttgttataaaatgagtttggcctccttttgctttctggctgtcatgctctctttcatttacaccttctgccatgggacaatgcagcatgaaagcccccatcagataccagcatcttgatattggtcttcccagtctctagaactgtgagaaataaatttattttctttataaattacccagtgtgtggaattctgctgtagcaacacacagcagactaagaAtctgtaagtgataacttttctgttattttctgaaaatgtcttttcttagtggtcactcttaaatgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagtgtgttggaaatattataccattagcttctggattctgttgttgatgctgaaaagcctat--------tgtatttccattgttggtaagtcttcta-tttttt-tctctctttgactgtttctaagatcatctgtttgtctttagtgttgtacag-tttcactatgttatttctagggatggctttggtttagttttcctacttaggacttatgtgcttcttgattgattcatgtatttcaatacctgtgggaaattctcagccattacatttttttgaatattacttatatcttatactccattttctccttctgaattccttttTTTAAAAAAAAATAGCTTCACTGAAGTATAATTAATGTATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30063575 785 - 77216781 taagtggtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggcttgttataaaaggagtttggcctccttttgctctctggctgtcgtgctgtcttgcatttacaccttctgccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatattggtcttcccagtctctagaactgtgagaaatcagtttattttctttataaattacccagtgtgtggaattctgttgtagcaacacacagcagactaagaatctgtaagtgataacctctctgttattctctgaaaatatcttttcttagtggtcactcttacgtgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagcatgttggaaatattataccattatcttctggattatgttgttgatgctgaaaagcctgttgctaatctgtatttccactgttggtaattcttcta--ttttt-tctctctttgactgtttctaagatcatctctttgcctttagtgttgtgtag-tttcactacgttatttctggggatggctttagtttagttttcctgcttaggacttatgtgtttcttgattgattcatgtatttcaatacctgtggaaaattctcagccattacattgtttg-aatattacttatattttatactccattttctccttctgaattccttttTTT---AAAAAATAGCTTCGCTGAAATATAATTAATATATC i rheMac8.chr16 C 0 I 2 s macFas5.chr16 27976192 785 - 80997621 taagtggtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggcttgttataaaaggagtttggcctccttttgctctctggctgtcgtgctgtcttgcatttacaccttctgccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatattggtcttcccagtctctagaactgtgagaaatcagtttattttctttataaattacccagtgtgtggaattctgttgtagcaacacacagcagactaagaatctgtaagtgataacctctctgttattctctgaaaatatcttttcttagtggtcactcttacgtgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagcatgttggaaatattataccattatcttctggattatgttgttgatgctgaaaagcctgttgctaatctgtatttccactgttggtaattcttcta--ttttt-tctctctttgactgtttctaagatcatctctttgcctttagtgttgtgtag-tttcactacgttatttctggggatggctttagtttagttttcctgcttaggacttatgtgtttcttgattgattcatgtatttcaatacctgtggaaaattctcagccattacattttttg-aatattacttatattttatactccattttctccttctgaattccttttTTT---AAAAAATAGCTTCGCTGAAATATAATTAATATATC i macFas5.chr16 C 0 I 2 s cerAty1.NW_012006043v1 1919796 768 - 8458610 taagtggtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggcttgttataaaaggagtttggcctccttttgctctctggctgtcgtgctgtcttgcatttacaccttctgccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatattggtcttcccagtctctagaactgtgagaaatcagtttattttctttgtaaattacccagtgtgtggaattctgttgtagcaacacacagcagactaagaatctgtaagtgataacctctctgttattctctgaaaatatcttttcttagtggtcactcttacatgatg-gtttagtttgtataaaattctaggttggcagctattttccttcag-------------------cattatcttctggattatgttgttgatgctgaaaagcctattgctaatctgtatttccactgttggtaattcttctattttttt-tctctctttgactgtttctaagatcatctctttgcctttagtgttgtgtag-tttcactacgttatttctggggatggctttagtttagttttcctgcttaggacttacgtgcttcttgattgattcgtgtatttcaatacctgtggaaaattctcagccattacatttcttg-aatattacttatattttatactccattttctccttctgaattccttttttt---aaaaaatagcttcactgaaatataattaatatatc i cerAty1.NW_012006043v1 C 0 I 2 s chlSab2.chr16 64875298 786 + 75148670 taagtggtgattaggctatgagaaccctgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggtttgttataaaaggagtttggcctccttttgctctctggctgttgtgctgtcttgcatttacactttctgccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatattggtcttcccagtctctagaactgtgagaaatcagtttattttctttataaattacccagtgtgtggaattctgttgtagcaacacacagcagactaagaatctgtaagtgataacctctctgttattctctgaaaatatcttttcttagtggtcactcttatatgatg-gtttagtttgtataaaattttaggttggcagctattttccttcagcatgttggaaatattataccattatcttctggattatgttgttgatgctgaaaagcctattgctaatctgtatttccactgttggtaattcttcta-tttttt-tctctctttgactgtttctaagatcatctctttgcctttagtgttgtgtag-tttcactacgttatttctggggatggctttagtttagttttcctgcttaggacttatgtgcttcttgattgattcatgtatttcaatacctgtggaaaattctcagccattacattttttg-aatattacttatattttatactccattttctccttctgaattccttttTTT---AAAAAATAGCTTCACTGAAATATAAttaatatatt i chlSab2.chr16 I 36 I 2 s manLeu1.NW_012106252v1 2104809 787 + 4244037 taagtggtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggaggggggtagttatcatgagagtgggcttgttataaaaggagtttggcctccttttgctctctggctgtcgtgctgtcttgcatttacaccttctgccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatatttgtcttcccagtctctagaactgcgagaaatcagtttattttctttgtaaattacccagtgtgtggaattctgttgtagcaacacacagcagactaagaatctgtaagtgataacctctctgttattctctgaaaatatcttttcttagtggtcactcttacatgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagcatgttggaaatattataccattatcttctggattatgttgttgatgctgaaaagcctattgctaatctgtatttccactgttggtaattcttctattttttt-tctctctttgactgtttctaagatcatctctttgcctttagtgttgtgtag-tttcactacgttatttctggggatggctttagtttagttttcctgcttaggacttatgtgcttcttgattgattcgtgtatttcaatacctgtggaaaattctcagccattacatttcttg-aatattacttatattttatactccattttctccttctgaattccttttttt---aaaaaatagcttcactgaaatataattaatatatc i manLeu1.NW_012106252v1 C 0 I 2 s colAng1.NW_012122154v1 2127212 786 + 4569836 taagtggtgattaggccatgagaaccctgccttcatcaatggattaatgtcattttatcatgggagggggatagttatcatgagagtgggcttgttataaaaggagtttggcctccttttgctctctggctgtcgtgctgtcttgcatttacaccttctaccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatattggtcttcccagtctctagaactgtgagaaatcagtttattttctttataaattacccagtgtgtggaattctgttgtagcaacacatagcagactaagaatctgtaagtgataacctctctgttattctctgaaaatatcttttcttagtgatcactcttacgcgatg-gtttagtttgtataaaattctaggttggcagctattttccttcagcatgttggaaatattataccattatcttctggattatgttgttgatgctgaaaagcctattgctaatctgtatttccactgttggtaattcttcta-tttttt-tctctctttgactgtttctaagatcatctctttgtctttagtgttgtgcag-tttcactatgttatttctggggatggctttagtttagttttcctgagtaggacttatgtgcttcttgattgattcatgtatttcaatacctgtggaaaattctcagccattacattttttg-aatattacttatattttatactccattttctccttctgaattccttttttt---aaaaaatagcttcactgaaatataattaatatatc i colAng1.NW_012122154v1 I 36 I 2 s calJac3.chr5 46099817 771 - 159171411 taagtggtgattaggccatgaggaccctgccttcatcagtggattcatgtcattttatcatgggagggggatagttatcatgagaatgggtttgtcataaagtgtgtttggcctccttttgctctctggctgtcgtgctgtcttgcatttccaccttctgccatggaacaatgcagcataaaggcccccatcagacgccagcatcttgatattgaacttctcagcccatagaactgtgataaataaatttcttttctttataaattacccagcgtgtggcattctgttgtagcaacacacagctgactaagaatctgtaagtgatgacttctctgttattttctgaaaatgtcttgtcttaa-------------atgatgtttttagttggcataaaattctaggttgacagctattttacttcagcattctggaaa---tataccattatcttctggattttgttgttgatgctgaaaagcctattgcaaatctgtatttccattgttggtaattatttta--tttgt-tctctctttgactgtttctaagatcacctctttgtctttggtgttgctcag-tttcactacattatttctagggatgcttttagtttagttttcctgtttaggacttttgtgcttcttgattaatttgtgtatttcaatacctgtggaaaattctcagccattgtattttttg-aatattacttctatcttatactccatgttctacttctgaattccTTttttt--aaaaaaatagcttcactgaagtataattaatatgtc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1810151 768 + 3513951 taagtggtgattaggccatgaggatcctgccttcatcagtggattcatgtcgttttatcatgggagcggggtagtcatcatgagagtgggcttgtcataaagtgcgtttggcctccttttgctctctggctgtcatgctgtcctgcatttccaccttctgccatgggacaacacagcatgaaggccctcatcagatgccagcatcttgatattggacttcccagcccacaaaactgtgataaatacatttcttttctttatgaattacccagtgtgtggcattctgttgtagcaacacacag----ctaagaAtctataagtgatgaattctctgttattttctgaaaatgtcttttcttaa-------------atgatg-atttagtttgcataaaattcttggttgacagctatcttacttcagcattctggaaatactataccattatcttctggattttgttgttgatgctgaaaaacctattgcaaatctgtatttccattgttggtaattctttta--tttgt-tctctctttgactgtttctaagatcatctcgttgtctttggtgttatgcag-tttcgctatgttatttctagggatggttttagtttagttttcctatttaggagttatgtgcttcttaattaattcatgtatttcaatacctgtggaaaattctgagccattgtatttttta-aatattacttctatcttatactccatgttctacttctgaattcctTtcttt---aaaaaatagcttcactgaagtataattaatatgtc i saiBol1.JH378271 C 0 I 2 s cebCap1.NW_016107730v1 1859071 743 + 1920343 taagtggtgattaggccatgaggaccctgccttcatcagtggattcatgtcattttttcatgggag-ggggtagttatcatgagagtgggcttgtcataaagtgtgtttggcctccttttgctctctggctgtcatgctttcttgcatttccaccttctgccatgggacaatgcagcatgaaggcccccatcagatgccagcatcttgatattggacttcccagtccatagaactgtgataaataaatttcttttctttataaattacccagtgtgtggcattctgttgtagcaacacacagctgactaagaATCCATAAGGGATGACTTCTCTGttattttctgaaaatgtcttttcttaa-------------atgatg-atttagtttgcataaaattctaggttgacagctattttacttcagcattctggaaatattataccattatcttctggattttgttgttgatgctgaaaagcctattgcaaatctgtatttccattgttggtaattctttta--tttgt-tctctctttgactgtttctaagatcatctctttgtctttggtgttgtgcag-tttcactatgttatttctagggatggttttagtttagttttcctatttaggacttatgtgcttcttcattaattcatgtatttcaatacctgtggaaaattctcagccattgtatttcttg-aatattacttctatcttatactccatgttctA-------------------------------CTTCACTGAAGTATAATTAATATGTC i cebCap1.NW_016107730v1 C 0 I 2 s aotNan1.NW_018502359v1 6974056 769 - 7032639 taagtagtgattaggccacgaggaccctgccttcatcagtggattcatgtcattttatcatgggaggcgggtagttatcatgagagtgggcttgtcataaagtgtgtttggcctccttttgctctctggctgtcatgctctcttgcatttccaccttctgccatgggacaatgtagcatgaaggcccccattaaatgccagcatcttgatattggacttcccagcccatagaactgtgataaataaatttcttttctttataaattacccagtgtgtggcattctgttgtagcaacacacagctgactaagaatctataagtgatgattcctctgttattttctgaaaatgtcttttcttaa-------------atgatg-atttagtttgcataaaattctaggttgacagctattttacttcagcattctggaaatattataccattatcttctggattttgttgttgatgctgaaaagcctattgcaaatctgtatttccattgttggtaattctttta--tttat-tctctctt----tgtttctaagatcatctctttgtctttggtgttgtgcag-tttaactatgttatttctagggatggttttagtttagttttcctatttaggacttacgtgcttcttgattaattcatgtatttcaatacctgtggaaaattctcagccattgtattttttg-aatattacttctgtcttatactccatgttctactcctgaattccttttttt--aaaaaaatagcttcactgaagtataattaatatgtc i aotNan1.NW_018502359v1 C 0 I 2 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2028879 5835 + 10377808 I a score=8157120.000000 s hg38.chr17_GL383564v2_alt 82745 835 + 133151 atatataattcatatactataaaatttacagatctaaagtataaaatcaaatggtttttagtataatgagagttataactactactaccattttagaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccctccaggcccaggaaatcattgctgtctctttagatttgcctgttctggacattttatat-aatgaagtcatagaatatgtgtttt--tttggctagcttcatttacatagtatgtttcaaggtccatccatgttgtaacatataacagGTATCATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttacttctaca-tttttttcctaagttttctagttttagctgtt-acatttaggctgtgctccattttgagtca--ttttttttgtctgtggtgtaagaaaggggtcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagattatttttccccattaattatattgggacctatgttgaatattaatggaccataaatgtgagggtttatttctagactctcaattttattctgttggtctgtatgtctatctttatgccaatagaatactgtctgtgttactgtagctttgtagtaagttttgaaatcatgaaatgttaatccccctactttgtt-cttctttttcaag---atcgttttggctattct-ggtcttatgcatttccacatgaataaaaggaacaacacgtcaagttctataaaacagctagctgggattttggtaggtgttgttgaaagttt s panTro5.chr17 16269319 834 + 83181570 atatataattcatatactataaaatttagaaatctaaagtataaaatcaaatggtttttagtataatgagagttataactactactaccattttagaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccctccaggcccaggaaatcattgctgtctctttagatttgcctgttctggacattttatat-aatgaagtcatagaatatgtgtttt--tttgactagcttcatttacatagtatgtttcaaggtccatgcatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttacttctaca-tttttttcctaagttttctagttttagctgtt-acatttaggctgtgctccattttgagtca--ttttttttgtctgtggtataagaaaggggtcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagacta-ttttccccattaattatattgggacctatgttgaatattaatggactataaatgtgagggtttatttctagactctcaattttattctgttggtccatatgtctatctttatgccaatagaatactgtctgtgttactgtagctttgtagtaagttttgaaatcatgaaatgttaatccccctactttgtt-cttctttttcaag---atcgttttggctattat-ggtcttatgcatttccacatgaataaaaggaacaacacgtcaagttctataaaacagctctctgggattttggtaggtgttgttgaaagttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16176774 834 + 83442489 atatataattcatatactataaaatttagagatctaaagtataaaatcaaatggtttttactataatgagagttataactactactaccattttagaacattttattacctctaatagaaaccttgtaccctttagtagtcactctctgttccctgcaaccctccaggcccaggaaatcattgctgtctctttagatttgcctgttctggacattttatat-aatgaagtcatagaatatatgtttt--tttgactagcttcatttacatagtatgtttcaaggtccatgcatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttacttctaca-tttttttcctaagttttctagttttagctgtt-acatttaggctgtgctccattttgagtca--ttttttttgtctgtggtataagaaaggggtcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagacta-ttttccccattaattatattgggacctatgttgaatattaatggactataaatgtgagggtttatttctagactctcaattttattctgttggtccatatgtctatctttatgccaatagaatactgtctgtgttactgtagctttgtagtaagttttgaaatcatgaaatgttaatccccctactttgtt-cttctttttcaag---atcgttttggctattct-ggtcttatgcatttccacatgaataaaaggaacaacacgtcaagttctataaaacagctctctgggattttggtaggtgttgttgaaagttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4011820 831 + 4267968 atatataattcatatactataaaatttacagatctaaagtataaaatcaaatggtttttagtataatgagagttata---actactaccattttagaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccctccaggcccaggaaatcattgctgtctcttcagatttgcctgttctggacactttatat-aatgaagtcatagaatatgtgtttt--tttgactggcttcatttacatagtatgtttcaaggtccatccatgttgtaacatataacatgtattATGGAGAAATAAGTGCATGATcctaacctaggatcatgaagatttacttctacattttttttcctaagttttctagttttagctgtt-acatttaggctgtgctccattttgagtca--ttttttttgtctgt-gtataagaaaggggtcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagactatttttccccattaattatattgggaactatgttgaatattaatggaccataaatgtgagggtttatttctagactctcaattttattctattggtctatatgtctatctttatgccaatagaatactgtctgtgttactgtagctttgtagtaagttttgaaatcatgaaatgttaatccccctactttgtt-cttctttttcaag---attgttttggctattct-ggtcttatgcatttccacatgaataaaaggaacaacacgtcaagttctataaaacagctcg-tgggattttggtaggtgttgttgaaagttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1994100 840 - 2193130 ATatataattcatatactataaaatttacggatctgaagtataaaatcaaatggtttttagtataatgagagttataactactacaagcatgttagaacattttattacctctaatagaaaccttgtacccattagtagtcactctcttttccctgcaaccctccaggcccaggaaatcactgctgtctctttagatttgcctgctctggacattttatatgagtgaagtcatacaatatgtgtttt--tctgactggctttatttacatagtatgtttcaaggttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttacttctacaatttttttcctaagttttctagttttagctgtt-acatttaggctgtgctccattttgagtcg--ttttttttgtctgtggtataagaaaggggtcaaacattttattcttttgcatgtggatgtctagttatcccagtattatttactggaaagactgtttccccccattaattatattgggacctatgttgaatattaatggaccataaatgagagggtttatttctagactctcaattttattctattggtctatatgtctatctttatgccaatagaatactgtctgggttactgtagctttgtagtaagttttgaaatcatgaaatgttaatccccctactttgtt-cttctttttcaagagaatagccaaaacaattct-ggtcttttgcatttccacatgaataaaagagacaacatgtcaagttctataaaacagctcgctgggatttcggtaggtgttgttgaaagttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30064362 836 - 77216781 ATatataattcatatactataaaatttatagatctaaagtataaaaccaaatggtttttagtataatgagagttataactactactaccattttaaaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccattcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacaatatgtgtttt--tttgtctgacttcatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGAAATAAGTGCATGATcctaacctaggatcatgaagatttatttctaca-tttttttcctaagttttctaattttagttgtt-acatttaggctgtgatccattttcagtca-tttttttttgtctgtggtataagaaagggatcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagac--tttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtgagggtttatttctggactctcaattttattctgttggtctatatgtctatctttatgccaatagaatactgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatattaatccccctactttgtt-cttctttttcaag---attgttttggctattctgggtcttttgtatttctacatgaagaaaaggaacaacacgtcaagttctatgaaacagctcgctgggattttggtaggtgttgttgaaagttt i rheMac8.chr16 I 2 C 0 s macFas5.chr16 27976979 837 - 80997621 ATatataattcatatactataaaatttatagatctaaagtataaaaccaaatggtttttagtataatgagagttataactactactaccattttaaaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccattcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacaatatgtgtttt--tttgtctgacttcatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttatttctaca-tttttttcctaagttttctaattttagttgtt-acatttaggctgtgatccattttcagtcattttttttttgtctgtggtataagaaagggatcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagcc--tttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtgagggtttatttctggactctcaattttattctgttggtctatatgtctatctttatgccaatagaatactgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatattaatccccctactttgtt-cttctttttcaag---attgttttggctattctgggtcttttgtatttctacatgaagaaaaggaacaacacgtcaagttctatgaaacagctcgctgggattttggtaggtgttgttgaaagttt i macFas5.chr16 I 2 C 0 s macNem1.NW_012014910v1 2034714 838 + 10377808 ATatataattcatatactataaaatttatagatctaaagtataaaaccaaatggtttttagtataatgagagttataactactactaccattttaaaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccattcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacaatatgtgtttt--tttgtctgacttcatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttatttctaca-tttttttcctaagttttctaattttagttgtt-acatttaggctgtgatccattttcagtcattttttttttgtctgtggtataagaaagggatcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagac--tttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtgagggtttatttctggactctcaattttattctgttggtctatatgtctatctttatgccaatagaatactgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatattaatccccctactttgttccttctttttcaag---attgttttggctattctgggtcttttgtatttctacatgaagaaaaggaacaacacgtcaagttctatgaaacagctcgctgggattttggtaggtgttgttgaaagttt i macNem1.NW_012014910v1 I 5835 C 0 s cerAty1.NW_012006043v1 1920566 838 - 8458610 atatataattcatatactataaaatttatagatctaaagtataaaaccaaatggtttttagtataatgagagttataactactactaccattttaaaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccgttcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacaatatgtgtttt--tttgcctgacttcatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaatctaggatcacgaagatttatttctaca-ttttttccctaagttttctagttttagttgtt-acatttaggctgtgatccattttcagtca-tttttttttgtctgtggcataagaaaggggccaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagactatttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtaagggtttatttctggactctcaattttattctgttggtctatatgtctatctttatgccagtagaatactgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatattaatacccctactttgtt-cttctttttcaag---attgttttggctattctgggtcttttgtatttctacatgaagaaagggaacaacacgtcaagttctatgaaacagctcgctgggattttggtaggtgttgttgaaagttt i cerAty1.NW_012006043v1 I 2 C 0 s chlSab2.chr16 64876086 838 + 75148670 atatataattcatatattataaaatttatagatctaaagtataaaaccaaatgggttttagtataatgagagttataactattactaccattttaaaacattttattacctctaatagaaaccttatacccattagtagtcactctctgttccctgcaaccattcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacaatatgtgtttt--tttgtctgacttcatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttatttctact-ttttttccctaagttttctagttttagttgtt-acatttaggctgtgatccattttcagtca-tttttttttgtctgtggtataagaaaggggtcaaacactttattcttttgcatgtggatgtctagttgttccagcattatttactgaaaagactatttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtgaaggtttatttctggactctcaattttgttctgttggtctatatgtctatctttatgccgatagaatactgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatactaatccccctactttgct-tttctttttcaag---attgttttggctattctgggtcttttgtatttccacatgaagaaaaggaacaacacgtcaagttctatgaaacagctcgctggggttttggtaggtgttgttgaaagttt i chlSab2.chr16 I 2 C 0 s manLeu1.NW_012106252v1 2105598 838 + 4244037 atatataaatcatatactataaaatttatagatctaaagtataaaaccaaatggtttttagtataatgagagttataactactactaccattttaaaacattttattacctctaatagaaaccttgtacccattagtagtcactctctgttccctgcaaccgttcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacaatatgtgtttt--tttgcctgacttcatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcatgaagatttatttctaca-ttttttccctaagttttctagttttagttgtt-acatttaggctctgatccattttcagtca-tttttttttgtctgtggtataagaaaggggccaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagactatttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtaagggtttatttctggactctcaattttattctgttggtctatatgtctatctttatgccagtagaatactgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatattaatccccctactttgtt-cttctttttcaag---attgttttggctattctgggtcttttgtatttctacatgaagaaagggaacaacacatcaagttctatgaaacagctcgctgggattttggtaggtgttgttgaaagttt i manLeu1.NW_012106252v1 I 2 C 0 s colAng1.NW_012122154v1 2128000 838 + 4569836 atatataattcatatactataaaatttatagatctaaagtataaaaccaaatggtttttagtataatgagagttgtaactactattaccattttaaaacattttattacctctaatagaaatcttgtacccattagtagtcactctctgttccctgcagccattcaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatacgatatgtgtttt--tttacctgactttatttacatagcatgtttcaagtttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacctaggatcacgaagatttgcttctaca-tttttttcctaagttttctagttttagctgtt-acgtttaggctgtgatccattttcagtca-tttttttttgtctgtggtataagaaaggggtcaaacattttattcttttgcatgtggatgtctagttgtcccagcattatttactgaaaagactatttttcctcattaattatattgggacctatgttgagaattaatggaccataaatgtgagggtttatttctggactctcaattttattctgttggtctataagtctatctttatgccaatagaataccgtctgggttattgtagctttgtagtaagttttgaaatcatgaaatattaatccccctactttgtt-cttctttttcaag---attgttttggctattctgggtcttttgtatttccacatgaagaaaaggaacaacacgtcaagttctatgaaacagctcgctaggattttggtagatgttgttgaaagttt i colAng1.NW_012122154v1 I 2 C 0 s calJac3.chr5 46100588 841 - 159171411 atatataattcatatactataaaatttacttacataatgtataaaatctaatggtttttaggataatgatagttataaatactgctaccatttcagagcattttattacctctaacagaaaccttgtacccagtagtagtcactctcctttccttgcaaccctccaggcccaggaaatcactgccgtcgctatagatttgcctgttctgggcattttatatgaacaaagtcatacaatatgtgtttttcttttactggcttcatttacatcatatgtttcaaggtttatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacccaggatcatgaagatttacttctatatttttttccctaagttttctagttttagctgtt-acatttaggctctgctccactttcagtca-ttttttttggtctgtggtgtaagaaaggggtcaaacattttattcctttgcatgtgcatgtccagttgtcccagcattatttactgaaaagactatttccccccattaattatattgggacctatgttgaaaattaatggaccataaatgtgagggtatatttcttgactctcaattttattctgttggtctatatgtctatctttatgccagtagaatgctgtctgtgttactatagatttgtagtaagttttgaaatcatgaaatggaaatccccctgctttgct-cttctttttcaag---attgttttggttattctgggtctttttcatttccacatgagtaaaagcaacaacatgtcgagttgtataaaacagctagctgggattttggtaggtgttgttgaacattt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1810921 819 + 3513951 atatataattcata-actataaaatttacctacctaaagtataaaatctaatggtttttaggataatgatagttgcaactactgcta-cattttagagcattttattacccctaacagaaaccttgtacccattaggagtcactc-----tccctgcaagcctccaggcccaggaaatcactgctgcctctatagatttgcctgttctggacattttatatgaatgaagtcatacaatatgtgttttt-tttgactggctttgtttacat-agatgtttcaaggttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacccaggatcatgaagatttacttctatatttttttccctaagttttctagttttagctgtt-acatttaggctctgctccactttcagtca--tttttttggtctgtggtgtaagaaaggggtcaaacattttattcttttgcatgtggatgtccagttgtcccagcattatttactgaagagactatttccccccattaattctattgggatctatgttgaaaattaatggaccgtaaatgtgagggtatatttcttgactctcaattttattctgttgg------------tctttatgccaatagaatactgtccgggttactgtagctttgtagtaagttttgaaatcatgaaacggaaatccccctactttgct-cttctttttcaag---attgttttggttattctgggtcttttgcatttccacatgaataaaaggaacaacatgtcaagttgtataaaacagctagctgggattttggtaggtgttattgaacattt i saiBol1.JH378271 I 2 C 0 s cebCap1.NW_016107730v1 1859816 827 + 1920343 ATatatactacatatactataaaatttacctacctaaagtataaaatctaatggtttttaggataatgacagttataactactgctaccattttagagcattttattacctctaacagaaaccttgtacccattagtagtcactgtccattccctgcaaccctccaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcatac---atgtgttttt-ttggactggcttcatttacatagtatgtttcaaggttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacccaggatcatgaagatttacttctttattttttttcctaagttttctagttttagctgtt-acatttaggctctgctccactttcagtca-ctttttttggtatgtggtgtaagaaaggggtcaaacgttttattcttttgcatgtg------cagttgtcccagcattatttactgaaaagactatttccccccattaattatattgggacctatgttgaaaattaatggaccataaatgtgagggtatatttcttgactctcaattttattctgttggtctatatgtctatctttatgccaatagaatactgtctgggttactgtagctttgtagtaagttttgaaatcacgaaatggaaatacccctactttgct-cttctttttcaag---attgttttggttattctgggtcttttgcatctccacatgaataaaaggaacaacatgtcaagttgtataaaac----agctgggattttggtaggtgttgttgaacattt i cebCap1.NW_016107730v1 I 2 C 0 s aotNan1.NW_018502359v1 6974827 838 - 7032639 atatataattagtatgctataaaatttacttacctaaagtataaaatctaatagtttttaggataatgatagttataactactgctaccattttagagcattttcttacctctaacagaaaccttgtacccattaggactcactctccattccctgcaaccctccaggcccaggaaatcactgctgtctctatagatttgcctattctggacattttatatgaatgaagtcaaacaatatgtgttttttttggactggctttgtttacatagtatgtttcaaggttcatccatgttgtaacatataacatgtattATGGAGGAATAAGTGCATGATcctaacccaggatcacgaagatttacttctatatttttttccctaagttttctagttttagctgttaacatttacgctctgctccactttcagtca--tttttttggcctgtggtgtaagaaaggggtcaaacgttttattcttttgcatgtggatgtccagttgtcccagcattatttactgaaaagactatttctccccattaattatattgggacctatgttgaaaattaagggaccataaatgtgagggtatatttcttgactctcaattttattctgttggtctatatgtctatccttatgccaatagaatactgtctgggttactgtagctttgtagtaagttttgaaatcatgaaatggaaatccccctactttgct-cttcttcttcaag---attgttttggttattctgggtcttttgcatttccacatgaataaaaggaacaacatgccaagttgtataaaacagctagctgggattttggtaggtg---ttgaacattt i aotNan1.NW_018502359v1 I 2 C 0 e mm10.chr11 22059362 3800 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=3049720.000000 s hg38.chr17_GL383564v2_alt 83580 306 + 133151 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCCTGTAACACAGAGGTGTGCAGGAAAGAAGGACTGCACTCCTCAA--GCCACCCTGCCTGAATCCTCCCTATGTAGAGGGAACTGGGG------TTAGAAATGGGTGAGCTATGAAAAATGGGATCTGCTGATGTGTATTGGCTGCTGGGAGGATTGGGAACTGCCACTCAGCTGCCCAGCACATGGTGCTTCTGGAAGGCAGAGACATGAGAAAT-AATGG-AGTCCCTCATTTAaacatcatagccccc-agtgttctta s panTro5.chr17 16270153 306 + 83181570 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCCTGTAACACAGAGGTGTGTAGGAAAGAAGGACTGCACTCTTCAA--GCCACCCTGCCTGGATCCTCCCTATGTAGAGGGAACTGGGA------TTAGAAATGGGTGAGCTATGAAAAATGGGATCTGCTGATGTGTattggctgctgggaggattgggaactgccactcagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacatcatagccccc-agtgttctta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16177608 306 + 83442489 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCCTGTAACACAGAGGTGTGTAGGAAAGAAGGACTGCACTCTTCAA--GCCACCCTGCTTGGATCCTCCCTATGTAGAGGGAACTGGGA------TTAGAAATGGGTGAGCTATGAAAAATGGGATCTGCTGATGTGTATTGGCTGCTGGGAGGATTGGGAACTGCCACTCAGCTGCCCAGCCCATGGTGCTTCTGGAAGGCAGAGCCATGAGAAAT-AATGG-AGTCCCTCATTTAaacatcatagccccc-agtgttctta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4012651 307 + 4267968 agatcaacttgggtgatactgcccatcttaacTGTGGAGCCCCAATGGAACATCTCTCCTGTAACACAGAGGTGTGTAGGAAAGAAGGACTGCACTCTTCAA--GCCACCCTGCCTGGATCCTCCCTATGTAGAGGGAAGTGGGG------TTAGAAATGGGTGAGCTATG-AAAATGGGATCTGCTGATGTGTattggctgctgggaggattgggaactgccacacagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacatcatagccccc-agtgttctta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1994940 306 - 2193130 agattaacttgggtgatgctg-ccatcttcacTGTGGAG-CCCAGTGGAACATCTCTCTTGTAACACAGAGGTGTGTAGGAAAGAAGGACTGCACTCTTCAA--GCCACCCTGCCTGGATCCTCCCCATGTGGAGTGAACTGGGG------TTAGAAATGGGTGAGCTATGAAAAATGGGATCTGCTGATGTGTattggctgctgggaggattgggaactgccactcagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacatcatagccccc-agtgttttta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30065198 279 - 77216781 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGGGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTAGAAATGGGTAAGTTATGAAAAATGGGATCTGCTGATGTGTattggctgctgggaggattgggaactgccactcagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacattatagccccc-agtgttctta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27977816 279 - 80997621 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGGGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTAGAAATGGGTAAGTTATGAAAAATGGGATCTGCTGATGTGTATTGGCTGCTGGGAGGATTGGGAACTGCCACTCAGCTGCCCAGCCCATGGTGCTTCTGGAAGGCAGAGCCATGAGAAAT-AATGG-AGTCCCTCATTTAaacatcatagccccc-agtgttctta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2035552 279 + 10377808 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGGGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTAGAAATGGGTAAGTTATGAAAAATGGGATCTGCTGATGTGTATTGGCTGCTGGGAGGATTGGGAACTGCCACTCAGCTGCCCAGCCCATGGTGCTTCTGGAAGGCAGAGCCATGAGAAAT-AATGG-AGTCCCTCATTTAaacatcatagccccc-agtgttctta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1921404 279 - 8458610 agatcaacttgagtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGGGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTAGAAATGGGTAAGTTATGAAAAATGGGATCTGCTGATGTGTattggctgctgggaggattgggaactgccactcagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacatcatagccccc-agtgttctta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64876924 279 + 75148670 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGCGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTAGAAATGGGTAAGTTATGAAAAATGGGATCTGCTGATGTGTAATGGCTGCTGGGAGGATTGGGAACTGCCACTCAGCTGCCCAGCCCATGGTGCTTCTGGAAGGCAGAGCCATGAGAAAT-AATGG-AGTCCCTCATTTAaacatcatagccccc-agtgttctta i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2106436 279 + 4244037 agatcaacttgggtgatactg-ccgtcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGGGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTAGAAATGGGTAAGTTATGAAAAATGGGATCTGCTGATGTGTattggctgctgggaggattgggaactgccactcagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacatcatagccccc-agtgttctta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2128838 279 + 4569836 agatcaacttgggtgatactg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAAC-CAGAGGGGTGTAGGAAAGAAGGACTGTATTCTTCAA--GCTGCCCTGCCTGGA--------------------------------TTACAAATGGGTAAGTTATGAAAAATGGGATCTACTGATGTGTattggctgctgggaggattgggaactgccactcagctgcccagcccatggtgcttctggaaggcagagccatgagaaat-aatgg-agtccctcatttaaacgtcatagccccc-agtgttctta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46101429 304 - 159171411 agatcaacttgggtgatattg-ccatcttaacTGTGGAG-CCCAGTGGAACATCTCTGTTGTAAGACAGAGGTGTGTAGGA---AAGGACTGTACTCTTCAA--GCCACCCTGCCTGGATCCTCCCTATGTAGAGGTAATTAGGG------TTAGAAGTGGGTGATCTATACAAAATGGGATCTGCTGATGTGTATTGGCTGCTGGGAAGATTGGAAACTGCCACTCAACTGCccagcccatggtacttctggaaggcagagccatgagaaat-aatggaagtgcgtcatttaaacattgtagccccc-agtgttctta i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1811740 307 + 3513951 agatcaacttgggtgatattg-ccatcttaacTGCGGAG-CCCAGTGGAACATCTCTCTTGTAACACAGAGGTGTGCAGGAAAGAAGGACTGTACTCTTCAA--TCCACCCTGCCTGGATCCTCCCTATGTAGAGGGAATTAGGG------TTAGAAGTGGGTGAGCTATAAAAAATGGGATCTGCTGATGTGTATTGGCTGCTGGAAGGATTGGGAACTGCCACTCAACTGCCCAGCCCATGGTGCTTCTGGAAGGCAGAGCCATGAGAAAT-AATGGAAATCCCTCATTTAAACATTGTAGccccc-ggtgttctga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1860643 307 + 1920343 agatcaacctgggtgatactg-ccatcttaacTGCAGAG-CCCAGTGGAACATCTCTCTTGTAACACAGAGGTGTGTAGGAAAGGAGGACTGTACTCTTCAA--GCTACCCTGCCTGGATCCTCCCTATGTAGAGGGAATTAAGG------TTAGAAGTGGGTGAGCTATAAAAAACGGGATCTGCTGATGTGTATTGGCTGCTGGAAGGATTGGGAACTGCCACTCAACTGCCCAGCCCATGGTGCTTCTGGAAGGCAGAGCCATGAGAAAT-AATGGAAATCCCTCATTTAAACATTGTAGCCTCC-AGtgttctga i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6975665 307 - 7032639 agatcaacttgggtgatattg-ccatcttaacTGTGGAG-CCCAATGGAACATCTCTCTTGTAACACAGAGGTGTGTAGGAAAGAAGGACTGTACTCTTCAA--GCCACCCTGCCTGGATCCTCCCTATGTAGAGAGAATTAGGG------TTAGAAGTGGGTGAGCTATAAAAAATGGGACCTGCTGATGTGTATTGGCTGCTGGGAGGATTGGGAACTGCCACTCAACTGCCCAGCCCATGGTGATTCTGGAAGGCAGAGCCATGAGAAAT-AATGGAAGTCCCTCATTTAAACATTGTAGccccc-agtgttctta i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22063162 310 - 122082543 agattaatt------ataata-CCATTTTAGTTGTTGAA-TCCATGAGGGTATCTTATCCACCACTTTGAAGTATGAGAGGGAGAGGGGAGGGACCATTCCATGGCCATCCTGCCTGGGTCCTTCCAATGTGTGGGAAACTGGGGGTGGGCTAAGGAAGGGACAGGTTGTGAAGAATAGAATTTGCTGATGTGTCTTGGCTGCTAAGATGAGTTGGGACTGCCACTCAGCTGCCAGGCCCATAATGCTTATGGAAAGCAGAGCTGTGAAGAATGGGTAC-AGTCCCTTGTCCAGACACTAGAATCTCCTGGTTCTCTTA i mm10.chr11 I 3800 I 194 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=7774836.000000 s hg38.chr17_GL383564v2_alt 83886 809 + 133151 tcaagtttcca--ttttttgtgtgtggttgttgagtaaatgcttctc-atttgttgtaagccctttaatcaatgcctagagcctttgactgatgtctttgttaattttgagtggct---taatagatgtctttcta-ggggagagacttccccaagctcttcataccaccatttctgtgcttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttagagatcttttccagttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaaatttgttgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTTTTTAGAATTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGGGATATTTCAGCTATTAAAGCTAACAACAATTTGATACATAAAAAGTGATTGAA----------TAAAGGGAATAATAAGGCAGAAATGCATATTTTATATCTTAACAGAAATGAATAAATGCAACATTCCATGTAAAAACTAACAAAATTACATCAATTCCCAGAC-AAAATCTATTAGGAGTCAACTTAATTTTATAAAAATGAATTTGTCATTTAATGAAAAAAGT------AA-----AACAATTAAATTTATTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGACAGAACAAATGCAACAATTAAACAATTGC s panTro5.chr17 16270459 817 + 83181570 tcaagtttcca-tttttttttgtgtggttgttgagtaaatgcttctcaatttgttgtaagccctttaatgaatgcctagagcctttgactgatgtctttgttaattttgagtggct---taatagatgtctttcta-ggggagagacttccccaagctcttcataccaccatttctgtgcttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttagagatcttctccagttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaaatttgttgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTGTTTAGAATTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGGGATATTTCAGCTATTAAAGCTAACAACAATTTGATACATAAAAAATGATTGAA----------TAAAGGGAATAATAAGGCAGAAATGCATATTTTATATCTTAACAGAAATGAATAAATGCAACATTCCATGTAAAAACTAACAAAATTACATCAATTCCCAGAC-AAAATCTATTAGGAGTCAACTTAATTTTATAAAAATGAATTTGTCATTTAATGAAAAAAGTAAAAGAAA-----AACAATTAAATTTATTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGACAGAACAAATGCAACAATTAAACAATTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16177914 814 + 83442489 tcaagtttc----ctttttttgtgtggttgttgagtaaatgcttctcaatttgttgtaagccctttaatcaatgcctagagcctttgactgatgtctttgttaattttgagtggct---taatagatgtctttcta-ggggagagacttccccaagctcttcataccaccatttctgtgcttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttagagatcttctccagttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaaatttgttgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTGTTTAGAATTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGGGATATTTCAGCTATTAAAGCTAACAACAATTTGATACATAAAAAATGATTGAA----------TAAAGGGAATAATAAGGCAGAAATGCATATTTTATATCTTAACAGAAATGAATAAATGCAACATTCCATGTAAAAACTAACAAAATTACATCAATTCCCAGAC-AAAATCTATTAGGAGTCAACTTAATTTTATAAAAATGAATTTGTCATTTAATGAAAAAAGTAAAAGAAA-----AACAATTAAATTTATTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGAGAGAACAAATGCAACAATTAAACAATTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4012958 795 + 4267968 tcaagtttcca---tttttttgtgtggttgttgagtaaatgcttctcaatttgttgtaagccctttaatcaatgcctagagcccttgactgatgtctttgttaattttgagtggct---taatagatgtgtttcta-ggggagagacttccccaagctcttcataccaccatttctgtgcttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttaaatctcgaaatatttctgtgttatattctggtaaatttccttagagatcttttccatttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaaatttgttgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGACTCTTTTATT----------------------------ATTAAT--TTTTTTAGAATTGGCTTTAATAAATGCAACTCTAACAGAGATGAC-AACACTTTA-TTGGCTTTGTAAGAAAGGGATATTTCAGCTATTAAAGCTAACAACAATTTGATACATAAAAAGTGATTGAG----------TAAAGGGAATAATAAGGCAGAAATGCATATTTTATATCTTAACAGAAATGAATAAATGCAACATTCCATGTAAAAACTAACAAAATTACATCAATTCCCAGAC-AAAATCTATTAGGAGTCAACTTAATTTTATAAAAATGAATTTGTCATTTAATGAAAAAAGTAAAAGAAA-----AACAATTAAATTTATTGACTTC------------------TTTCTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGACAGAACAAATGCAACAA-TAAACAATTGT i gorGor5.CYUI01015385v1 C 0 I 17 s nomLeu3.chrUn_GL397460_1 1995246 819 - 2193130 tcgagtttccattttttttttttgtggttgttgagtaaatgcttctcaatttgttgtaagccctttaatcaatgcctagagcgtttgactgatgtctttgctaattttgagtagct---taatagatgtctttcca-ggggggagacttccccaagctcttcataccgccatttctgtgcttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatgttttcaatctctaaatatttctgtgttatattctggtaaatttccttagagatcttttccagttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaaatttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTTTTTAGAATTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACGTCATTTGGCTTTGTAAGAAAGGGATATTTCAGTTATTAAAGCTAACAACAATTTGATACATAAAAAGTGATTGAG----------TAAAGGGAATAATAAGGCAGAAATGCATATGTTATATCTTAACAGAAATGAATAAATGCAACATTCCATGTAAAAACTAACAAAATTACATCAATCCCCAGACAAAAAACTATTAGGAATCAACTTAATTTTATAAAAATGAATTTGTCATTTAATGAAAAAAGTAAAAGAAA-----AACAATTAAATTTATTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGAAAAATTATTAATAAAATTAAGCTGACGAAACAAATGCAACAATTAAACAATTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30065477 824 - 77216781 ccaagtttcca-----tttttttgtggttgttgagtaaatgcttctcgatttgttgtaaggcctttaatcaatgtctagagcctttgactgatgtctttgctaattttgagtggct---taattgatgtctttcta-ggagagagacttccccaagctcttcatatcgccatttctgtatttcttcaaacagattttggatcttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttatctatcttttccagttgacttactcttttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGACTCTTTTATT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGCAATATTTCAGTTATTAAAGCTAAGAACAATTTAATACATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACATAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAATCCCCAGACAAAAAACTATTAGGAGTCAACTTGATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGTTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGGACAATTATTAATAAAAGTAAGCTGACAAAACAAATGCAACAATTAAACAATTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27978095 824 - 80997621 ccaagtttcca-----tttttttgtggttgttgagtaaatgcttctcgatttgttgtaaggcctttaatcaatgtctagagcctttgactgatgtctttgctaattttgagtggct---taattgatgtctttcta-ggagagagacttccccaagctcttcatatcgccatttctgtatttcttcaaacagattttggatcttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttatctatcttttccagttgacttactcttttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGCAATATTTCAGTTATTAAAGCTAAGAACAATTTAATACATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACATAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAATCCCCAGACAAAAAACTATTAGGAGTCAACTTAATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGTTGACTCCTAGAACTCTGTTAAAATATTTCAGTGAAGCTCTGTGGGACAATTATTAATAAAAGTAAGCTGACAAAACAAATGCAACAATTAAACAATTGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2035831 824 + 10377808 tcaagtttcca-----tttttttgtggttgttgagtaaatgcttctcgatttgttgtaaggcctttaatcaatgtctagagcctttgactgatgtctttgctaattttgagtggct---taattgatgtctttcta-ggagagagacttccccaagctcttcatatcgccatttctgtatttcttcaaacagattttggatcttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttatctatcttttccagttgacttactcttttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGCAATATTTCAGTTATTAAAGCTAAGAACAATTTAATACATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACATAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAATCCCCAGACAAAAAACTATTAGGAGTCAACTTAATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGTTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGGACAATTATTAATAAAAGTAAGCTGACAAAACAAATGCAACAATTAAACAATTGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1921683 824 - 8458610 ccaagtttcca-----tttttttgtggttgttgagtaaatgcttctcaatttgttgtaaggcctttaatcaatgtctagagcctttgactgatgtctttgctaattttgagtggct---taattgatgtctttcta-ggagagagacttccccaagctcttcatatcgccatttctgtatttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctagtaaatttccttatctatcttttccagttgacttattctgttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTACT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGCGATATTTGAGTTATTAAAGCTAAGAACAATTTAATACATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACATAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAATCCCTAGACAAAAAACTATTAGGAGTCAACTTAATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGTTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGGACAATTATTAATAAAAGTAAGCTGACAAAACAAATGCAACAATTAAACAATTGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64877203 824 + 75148670 ccaagtttcca-----tctttttgtggttgttgagtaaatgcttctcaatttgttgtaaggcctttaatcaatgtctagagcctttgactgacttctttgctaattttgagtggct---taattgatgtctttctg-ggagagagacttccccaagctcttcatatcgccatttctgtatttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttatctatcttttccagttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaattgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGTAATATTTCAGTTATTAAAGCTAAGAACAATTTAATATATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACATAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAACCCCCAGACAAAAAACTATTAGGAGTCAACTTAATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGCTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGAACAATTATTAATAAAAGTAAGCTGACAAAACAAATGCAACAATTAAACAATTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2106715 824 + 4244037 ccaagtttcca-----tttttttgtggttgttgagtaaatgcttctcaatttgttgtaaggcctttaatcaatgtctaaagcctttgactgatgtctttgctaattttgagtggct---taattgatgtctttcta-ggagagagacttccccaagctcttcatatcgccatttctgtatttcttcaaacagattttggaccttcacattctagcttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatattctggtaaatttccttatctatcttttccagttgacttattctgttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTACT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGCGATATTTGAGTTATTAAAGCTAAGAACAATTTAATACATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACATAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAATCCCCAGACAAAAAACTATTAGGAGTCAACTTAATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGTTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGGATAATTATTAATAAAAGTAAGCTGACAAAACAAATGCAATAATTAAACAATTGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2129117 824 + 4569836 ccacgtttcca-----tttttttgtggttgttgagtaaatgtttctcaatttgttgtaaggcctttaatcaatgtctagagcctttgactgacatctttgctaattttgagtggct---taattgatgtctttcta-ggagagagacttccccaagctcttcatatcaccatttctgtacttcttcaaacagattttggaccttcacattctagtttgtctgtcatctctttcatattttcaatctctaaatatttctgtgttatagtctggtaaatttccttatctatcttttccagttgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagtttgaaagtttattgtattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGGCTCTTTTATT----------------------------ATTAAT--TTTTTAAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGCGATATTTCAGTTATTAAAGCTAAGAACAATTTAATACATAAAAAGTGATTGAACACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACACAAATGAATAAATGTGACATCCCATTTAAAAACTAACAAAATTACATCAATCCCTAGACAAAAATCTATTAGGAGTCAACTTAATTTTATAAAAATGGATTTGTCATTTAGTCAAAAAAGTAAAAGAAA-----AACAATTAAATGTGTTGACTCCTAGAACTCTGTTAAAATATTTCTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGACAAAACAAATGCAACAATTAAACAATTGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46101733 940 - 159171411 ccaagtttcca--ttttgttgttgttgttgttgagtaaatgtttctcagtttgttgtaagccctttaatcaatgtctagagcctttgactaatgtctttgctaattttgagtggtttaataatagatgtctttcta-ggggaaagacttccccaagctcttcataccatcactTTTGTAGTCCTTCAAACAGatattggaccttcacattctagcttgtctgtcatctctttcgtattttcaatgtctgaatatt----tgttatattctggtaaatttccctagatatattttccagctgacttattctcttttaatctttgtctaatttaatgtttaacctatcagtcgag-tttaaaatttattttattttacttttGTAGAAAAGAAAGGCTATTTTAtttatttattttattgcattttaggttttggggtacatgtgcagaacatgcaagatagttgcataggtacacacatgacagtgtgttttgctgccttcctccccttcacccacatttggcattAAT--TTTTTTAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGACAAATACTTTATTTGGCTTTGTAAGAAAGGGATATTTCAGTCATTAAAG-------CAATTTGATATATAAAAAATGATTGAATACATAAAAGTAAAGGGAATAATGAGACAGAAATGCATATTTTATATCTTAACAGAAATGAATAAATGTGACATTTGATTTAAAAACTATCAAAATTACTTCAATGCTCAGACAAAAAATTATT--GAGTCAACTTAATTTTATAAAAATGAATGTATCATTTAATGAAAAAAGTAAAAAAAAAAAACAACAGTTAAATTTACTGACTCCTAGAAACCTGTGAAAAGGTTTTTGTAAAGCTCTGTGGAGCAATTATTAATAAAATTAAGCTGACAGAACAAATACAACAACTAAACAATTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1812047 820 + 3513951 ccaaattttga--ttttgttgttgttgttgttgagtaaatgtttctcagtttgttgtaagccctttaatcaatgtctagagcctttgactgatgtctttgctaattttgagtggcttaataatagatgtctttctc-ggagaaagacttccccaagctcttcataccaccatttttatactccttcaaacagatattggaccttcacattctagcttgtctgtcatctctttcatattttcaatgtctgaatatttctgtgttatattctggtaaatttccttagatatattttccagtcgacttattctcttttcatctttgtctaatttaatgtttaacctatcaatcaagttttaaaatttattttattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGTCTCTTTT-------------------------------ATTAATAATTTTTTAGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTTTAAGAAAGAGCTATTTCAGTCATTAAAG-------CAATTTGATATATAAAAAGTGATTGAATACATAAAAGTAAAGGGAATAATGAGGCAGAAATGTATATTTTATATCTTAACAGAAATGAATCAATGTGACATTCGATTTGAAAACTATCAAAATTACATCAATGCTCAGACAAAAAATTATT--GAGTCTACTTAATTTTATAAAAATGAATGTATCATTTAATGAAAAAAGTAAAAGAAA-----AACAGTTAAATTTACTGACTCCTAGAACCCTGGGGAAAGATTTTTGTGAAACTCTGTGGAACAATTATTAATAAAATTAAGCTGACAAAACAAATACAACAACCAAACAATTTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1860950 815 + 1920343 tcaagatttca--ttttgttgttgttgttgttgagtaaatgtttctcagtttgttgtaagccctttaatcaatgtctagagcctttgactgatgtctttgctaattgtgagtggcttaataatagatgtctttcta-ggggaaagacttccccaagctcttcataccaccatttttgtacttcttcaaagagatattggaccttcacattctagcttgtctgtcatctctttcatattttcaatgtctgaatatttctatgttatattctgataaatttccttagaaatattttccagtcgacttattctcttttcatctttgtctaatttaaattttaacctatcaatcgagttttaaaatttattttattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGTCTCTTTTATT----------------------------ATTAAT--TTTTTTTGACTTGGCTTTAATAAATGCAATTCTAACAGAGATGAT-GATACTATATTTGGCTTTTTAAGAAAGGGATATTTCAGTCATTAAAG-------CAATTTGATATGTAAAAAGTGATTGAATACATAAAAGTAAAGGGAATAATGAGGCAGAAATGCATATTTTATATCTTAACAGAAATGAATAAATGTGACATTCGATTTGAAAACTATCAAAATTACATCAATGCTCAGACAAAAAATTACT--GAGTCTACTTAATTTTATAAAAATGAATGTATCATTTAATGAAAAAAGTAA-----------AACAGTTAAATTTACTGACTCCTAGAACTCTGTGAAAAGATTTTTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGACAAAACAAATACAACAACTAAACAATTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6975972 813 - 7032639 ccaagtttcca--ttttgttgttgttgttgttaagtaaatgtttctcagtttgttgtaagccctttaatcaatgtctagagcctttgactgatgtctttgctaattttgagtggcttaataatagatgtttttctagggggaaagacttccccaagctcttcataccaccatttttgtactccttcaaatagatattggaccttcacattctagcttgtctgtcatctctttcatattttcaaggtctgaatatttctgtattatattctggtaaatttccttaggtgtattttccagtcgatttattctcttttcatctttgtctaatttaatgtttaacctatcaatcgagttttaaaatttattttattttacttttgtagaaAAGAA------------------------------------------------------------------------------------------AGTCTCTTTTATT----------------------------ATTAAC--TCTTTTAGACTTGGCTTTAATACATGCAATTCTAACAGAGATGAC-AATACTTTATTTGGCTTTGTAAGAAAGGGATATTTCAGTCATTAAAG-------CAATTTGATATATAAAAAGTGATTGAATACATAAAAGTAAAGGAAATAATGAGGCAGAAATGCATATTTTATATCTTAACAG---------AATGTGACATTCGATTTAAAAACTATCAAAATTACATCAATGCTCAGACAAAAAATTATT--GAGTCAACTTAATTTTATAAAAATGAATGTATCATTTAATGAAAAAAGTAAAAGAAA-----AACAGTTAAATTTACTGACTCCTAGAACCCTGTGAAAAGATTTTTGTGAAGCTCTGTGGAACAATTATTAATAAAATTAAGCTGACAAAACAAATACAACAACTAAACAATTTC i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=29610.000000 s hg38.chr17_GL383564v2_alt 84695 3 + 133151 TGT s panTro5.chr17 16271276 3 + 83181570 TGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16178728 3 + 83442489 TGT i panPan2.chr17 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1996065 3 - 2193130 TGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30066301 3 - 77216781 TGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27978919 3 - 80997621 TGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2036655 3 + 10377808 TGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1922507 3 - 8458610 TGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64878027 3 + 75148670 TGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2107539 3 + 4244037 TGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2129941 3 + 4569836 TGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46102673 3 - 159171411 TGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1812867 3 + 3513951 TGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1861765 3 + 1920343 TGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6976785 3 - 7032639 TGT i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e gorGor5.CYUI01015385v1 4013753 17 + 4267968 I a score=1855125.000000 s hg38.chr17_GL383564v2_alt 84698 185 + 133151 GACTTAATAGGAGAAGTATAAAATATCTAAAAATGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGCACCCTGAATAATATTATTGATATCAAAAGAAAATTTTGATTTTTTGAAGCCACAAAAGACCTAGTGATGA s panTro5.chr17 16271279 185 + 83181570 GACTTAATAGGAGAAGTATAAAATATCTAAAAATGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGCACCCTGAATAATATTATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACAAAAGACCTAGTGATGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16178731 185 + 83442489 GACTTAATAGGAGAAGTATAAAATATCTAAAAATGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGCACCCTGAATAATATTATTGATATCAAAAGAAAATTTTGACTCTTTGAAGCCACAAAAGACCTAGTGATGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4013770 183 + 4267968 GACTTAATA-GAGAAGTATAAAATATCTAAAAATGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTTGTTAGTTCAGTAGGAGATGAGTGAAAATTTAGCACCCTGAATAATATTATTGATATCAAAAGAAAATTTTGACT-TTTGAAGCCACAAAAGACCTAGTGATGA i gorGor5.CYUI01015385v1 I 17 C 0 s nomLeu3.chrUn_GL397460_1 1996068 183 - 2193130 GAC--AATAGGAGAAGTATAAAATATCTAAAAATGTCTAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGCACCCTGAATAATATTATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACAAAAGACCTAGTGATGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30066304 185 - 77216781 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAACTTTGTCTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACTAAAGATCTACTGATGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27978922 185 - 80997621 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACTAAAGACCTACTGATGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2036658 182 + 10377808 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGT---AGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACTAAAGACCTACTGATGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1922510 185 - 8458610 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAAATTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACTAAAGACCTACTGATGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64878030 185 + 75148670 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTTTTTGAAGCCACTAAAGACCTACTGATGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2107542 185 + 4244037 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTTTTTGAAGTCACTAAAGACCTACTGATGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2129944 185 + 4569836 GACTTAATAGGAGAAGTATAAAATATCTAAAAGTGTCCAATAGAATTATGAGAGCTAAAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAACTTAGCACCCTGAATAATATGATTGATATCAAAAGAAAATTTTGACTGTTTGAAGCCACTAAAGACCTACTGATGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46102676 185 - 159171411 GACTTAGTAGGAGAAGTATAAAATATCTAAAAATGTCCAGTAGTATTACAAGAGCTACAATTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGTACCCTGAATAATATTCTTGATATCAAAAGAAAATTTTGACTTCTTGAAGCCACAAAAGACCTAGGGATGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1812870 185 + 3513951 GACTTAATAGGAGAAGTATAAAATATCTAAAAATGTCCAGTAGAATTACAAGAGCTACAACTTTGTTTTTAATGAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATGCAGTGCCCTGAATAATATTCTTGATATCAAAAGAAAAATTTGACTTCTTGAAGTCACAAAAGACCTAGGGATGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1861768 185 + 1920343 GACTTAATAGGAGAAGTATAAAATATCTAAAAATGTCCAGTAGAATTACAAGAGCTATAACTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGTACCCTGAATAATATTCTTGATATCAAAAGAAAATTTTGACTTCTTGAAGTCACAAAAGACCTAGGGATGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6976788 176 - 7032639 GACTTAATAGGAGAAGTATAAAATATCTAAAAATGTCCAATAGAATTACAAGAGCTACAATTTTGTTTTTAATTAAAATTTCATTAGTTCAGTAGGAGATGAGTGAAAATTTAGTACCCTGAATA---------ATATCAAAAGAAAATTTTGACTTCTTGAAGTCACCAAAGACCTAGGGATGA i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 383140 3208 - 852752 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=2540534.000000 s hg38.chr17_GL383564v2_alt 84883 269 + 133151 AATTTTACACttaaaatttgcacttta--aattatactcttcacttttagaagt--tgtttgaca-ttttttttttaaaca-tgcctatactttttgcatagtggctaccattttcttttagggatttgattccttattttgtcgtataagctctttaaacatagttatttaatatactTGGCTTTAACCTTCTGTTTCTTGTATCTTCTCCTCCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATTTATCAGCATGAAGGTTCTT--------------G s panTro5.chr17 16271464 268 + 83181570 AATTTTACACTTAAAATTTGCACTTTA--AATTATACTCTTCACTTTTAGAAGT--TGTTTGACA-TTTTTTTTTTAAACA-TGCCTATA-TTTTTGCATAGTGGCTACCATTTTCTTTTAGGGATTTGATTCCTTATTTTGTCGTATAAGCTCTTTAAACATAGTTATTTAATATACTTGGCTTTAACCTTCTGTTTCTTGTATCTTCTCCTCCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATTTATCAGCATGAAGGTTCTT--------------G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16178916 267 + 83442489 AATTTTACACTTAAAATTTGCACTTTA--AATTATACTCTTCACTTTTAGAAGT--TGTTTGACA--TTTTTTTTTAAACA-TGCCTATA-TTTTTGCATAGTGGCTACCATTTTCTTTTAGGGATTTGATTCCTTATTTTGTCGTATAAGCTCTTTAAACATAGTTATTTAATATACTTGGCTTTAACCTTCTGTTTCTTGTATCTTCTCCTCCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATTTATCAGCATGAAGGTTCTT--------------G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4013953 267 + 4267968 AATTTTACACTCAgaatttgcactttg--aattatactcttcacttttagaagt--tgtttgact--tttttttttaaaca-tgcctata-tttttgcatagtggctaccatgttcttttagggatttgattccttattttgtcgtataagctctttaaacatagttatttaatatacttggctttaaccttctgtttcttgtatcttctcctccttgctaattgtgagttatttccttgggtgttttgttaatttATCAGCATGAAGGTTCTT--------------G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1996251 283 - 2193130 AATTTTACACTTAAAATTTGCACTCTA--Aattatactcttcacttttagaagt--tgtttgacatttttttttttaaaca-tgcctatactttttgcatagtggctaccat-ttgttttagggatttgattccttatcttgtagtataagctctttaaacatagttatttaatattcttggctttaaccttctgtttcttgtgtcttctcctccttgctaattgtgggttatttccttgggtgtttcgttaatttgtcagcatgaagtttcttgaatcatatgggtag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30066489 260 - 77216781 Aattttacatttaaaatttgcacttta--aattatactcttcacttttaGAAGT--TGTTTGACT-----TTTTTTAAACA-TGCCTATATTTTTTGCGTAGTAACTACCAT-TTTGTTTAGGGATTTGATTCCTTATTTTGTCCTATAAGCTCTTTAAATA----TATTTAATATTCTTGGCTTTAACCTTTTGTATCTTGTATCTTCTCCTTCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATTTACCAGCATGAAGGTTCTT--------------G i rheMac8.chr16 C 0 I 10 s macFas5.chr16 27979107 260 - 80997621 AATTTTACATttaaaatttgcacttta--aattatactcttcacttttagaagt--tgtttgact-----ttttttaaaca-tgcctatattttttgcgtagtaactaccat-tttgtttagggatttgattccttattttgtcctataagctctttaaata----tatttaatattcttggctttaaccttttgtatcttgtatcttctccttcttgctaattgtgagttatttccttgggtgttttgttaatttACCAGCATGAAGGTTCTT--------------G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2036840 260 + 10377808 AATTTTACATTTAAAATTTGCACTTTA--AATTATACTCTTCACTTTTAGAAGT--TGTTTGACT-----TTTTTTAAACA-TGCCTATATTTTTTGCGTAGTAACTACCAT-TTTGTTTAGGGATTTGATTCCTTATTTTGTCCTATAAGCTCTTTAAATA----TATTTAATATTCTTGGCTTTAACCTTTTGTATCTTGTATCTTCTCCTTCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATTTACCAGCATGAAGGTTCTT--------------G i macNem1.NW_012014910v1 C 0 I 10 s cerAty1.NW_012006043v1 1922695 259 - 8458610 Aattttacatttaaaatttgcacttta--aattatactcttcacttttagaatt--tGTTTGACT-----TTTTTAAAACA-TGCCTAT-TTTTTTGCGTAGTAACTACAAT-TTTGTTTAGGGATTTGATTTCTTATTTTGTCCTATAAGCTCTTTAAACA----TATTTAATATTCTTGGCTTTAACCTTTTGTGTCTTGTATCTTCTCCTTCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTgttaatttatcagcatgaaggttctt--------------g i cerAty1.NW_012006043v1 C 0 I 14 s chlSab2.chr16 64878215 260 + 75148670 AATTTTACATTTAAaatttgcagttta--aattatactcttcacttttagaagt--tgtttgaca-----gtttttaaaca-tgcctacattttttgcatagtaactcccat-tttgtttagggatttgattccttattttgtcctataagctctttaaaca----tatttaatattcttggctttaatcttctgtatcttgtatcttctccttcttgctaattgtgagttatttccttgggtgctttgttaatttATCAGCATGAAGGTTCTT--------------G i chlSab2.chr16 C 0 I 14 s manLeu1.NW_012106252v1 2107727 259 + 4244037 AATTTTACATTTAAAATTTGCACTTTA--AATTATACTCTTCACTTTTAGAAGT--TGTTTGACT-----TTTTTTAAACA-TGCCTAT-TTTTTTGCGTAGTAACTACAAT-TTTGTTTAGGGATTTGATTCCTTATTTTGTCCTATAAGCTCTTTAAACA----TATTTAATATTCTTGGCTTTAACCTTTTGTATCTTGTATCTTCTCCTTCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTgttaatttatcagcatgaaggttctt--------------g i manLeu1.NW_012106252v1 C 0 I 14 s colAng1.NW_012122154v1 2130129 260 + 4569836 AATTTTACATTTAAAATTTGCACTTTA--AATTACACTCTTCATTTTTAGAAGT--TATTTGACT-----TTTTTTAAACA-TGCCTATATTTTTTGCATAGTGATTACCAT-TTTGTTTAGGGATTTGACTCCTTATTTTGTCCTATAAGCTCTTTAAACA----TATTTAATATTCTTGGCTTTAACCTTCTGTATCTTGTATCTTCTCCTTCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATTTATCAGCATGAAGGTTCTT--------------G i colAng1.NW_012122154v1 C 0 I 14 s calJac3.chr5 46102861 264 - 159171411 AATTTTACATTTAAAATTTGCACTTTA--AATTATACTCTTCACTTTTAAGAGTTCTATTTGACA----TTTTAAAAAACA-TACCTATTCTTTTTGCATAGTGGCCACCTT-TTTTAAAAGGGATTTGATAGCTTATTTTGTCTTATAAGCTCTTTAAACATAGTTATTTAATATTCTTGGCTCTAA---TCTGTTTCTTCTGTCTTCTCCGCCTTGCTAATTGTGAGTTATTTCCTTGGGTGTTTTGTTAATATATCAGCATGGAGGTTCTT--------------G i calJac3.chr5 C 0 I 14 s saiBol1.JH378271 1813055 267 + 3513951 AATTTTACATTTAAAAATTGCACTTTA--Aattatactcttcacttttagaagttctgtttgaca----tttttaaaaaca-tgcctgttcttttgacatagtggctacctt-ttttaaaagggatttggtagcttattttgttttataagctctttaaacacagttatttaatattcttggctctaatcttctgtttcttgtgtcttctcctccttgctaatggtgagttatttccttgggtgttttgttaatttatcagcatgaaggttctt--------------g i saiBol1.JH378271 C 0 I 14 s cebCap1.NW_016107730v1 1861953 268 + 1920343 AATTTTACATTTAAAATTTGCACTTTA--Aattatactcttcacttttagaagttctatttgaca----tttttaaaaacactgcctgttctttttgcatagtggctacctt-tttttaaagggatttggtaccttattttgtcttataagctctttaaacatagttatttaatattcttggctctaattttctgtttcttatgtcttctcctccttgctaattgtgagttatttccttggatgttttgttaatttATCAGCATGAAGGTTCTT--------------G i cebCap1.NW_016107730v1 C 0 I 14 s aotNan1.NW_018502359v1 6976964 266 - 7032639 AATTTTACATTTAAAATTTGCTCTTTA--Aattatactcttcacttttggaagttctatttgaca----tttttaaaaaca-tgcctactctttttgcatagtggctacctt-tttttaaagggatttgataccttattttgtcttataagctctttaaacatagtt-tttaatattcttggctctaatcttctatttcttgtgtcttctcctccttgctaattgtgagttatttccttgggtgttttgttaatttATCAGCATGAAGGTTCTT--------------G i aotNan1.NW_018502359v1 C 0 I 14 s dasNov3.JH570468 386348 263 - 852752 aatctatcagctgagtttttaaatttaataattttattgtttatttctagaagttctgtttggtt-----ctttaaaaata-tgcttttcctttttgcataatgacta---t-attttttagggtttcagttcttaattttgtcatataattcctttaaacatagttatttaatagtttTGGCTCTAAGC-TCCATTTTGTGGGTCTTCTGATGCTTGCTCATTATAGATTATTTCCCTTTG-ATTTTgttaatgtatcagcttgaagtttcat--------------g i dasNov3.JH570468 I 3208 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=220257.000000 s hg38.chr17_GL383564v2_alt 85152 42 + 133151 --------------CATTGATTCAACCCCCAAACCTTAATGATAAATAGGTCACTA s panTro5.chr17 16271732 42 + 83181570 --------------CATTGATTCAACCCCCAAACCTTAATGATAAATAGGTCACTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16179183 42 + 83442489 --------------CATTGATTCAACCCCCAAACCTTAATGATAAATAGGTCACTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4014220 41 + 4267968 --------------CATTGATTCAACCCCC-AACCTTAATGATAAATAGGTCACTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1996534 42 - 2193130 --------------cattgattcaacccccaaaccttaatgataaataggtcacta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27979367 10 - 80997621 -------------------------------------AATCAT--ATGG------- i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1922968 41 - 8458610 --------------catcgattc-acccccaaaccttaatgataaataggtcactg i cerAty1.NW_012006043v1 I 14 C 0 s chlSab2.chr16 64878489 41 + 75148670 --------------CATCGATTC-ACCCCCAAACCTTAATGATAAATAGGTCACTG i chlSab2.chr16 I 14 C 0 s manLeu1.NW_012106252v1 2108000 41 + 4244037 --------------catcgattc-acccccaaaccttaatgataaataggtcactg i manLeu1.NW_012106252v1 I 14 C 0 s colAng1.NW_012122154v1 2130403 41 + 4569836 --------------CATCGATTC-ACCCCCAAACCTTAATGATAAATAGGTCACTG i colAng1.NW_012122154v1 I 14 C 0 s calJac3.chr5 46103139 42 - 159171411 --------------CACAGATTCAACTCTCAAAGCTTAATGATAAATAGGTCACTA i calJac3.chr5 I 14 C 0 s saiBol1.JH378271 1813336 42 + 3513951 --------------catagattcaactctcaaagcttaatgataaacaggtcacta i saiBol1.JH378271 I 14 C 0 s cebCap1.NW_016107730v1 1862235 38 + 1920343 --------------CATAGATTCAACTCTCAAAGCTTAATGATAAATA----ATGA i cebCap1.NW_016107730v1 I 14 C 0 s aotNan1.NW_018502359v1 6977244 42 - 7032639 --------------CATAGATTCAACTCTCAAAGCTTAATAATAAATAGGTCACTA i aotNan1.NW_018502359v1 I 14 C 0 s dasNov3.JH570468 386611 56 - 852752 aatcatgtgggtagtgtaaattcaaatcccaaaccaaggtgatacacaggtcagta i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I e macNem1.NW_012014910v1 2037100 10 + 10377808 I e rheMac8.chr16 30066749 10 - 77216781 I a score=322528.000000 s hg38.chr17_GL383564v2_alt 85194 45 + 133151 GTTTAACAATCTCAAAGGAGAtttttactatttact-t--tttttttt s panTro5.chr17 16271774 45 + 83181570 GTTTAACAATCTCAAAGGAGAtttttactatttact-t--tttttttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16179225 44 + 83442489 GTTTAACAATCTCAAAGGAGAtttttactatttac--t--tttttttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4014261 44 + 4267968 GTTTAACAATCTCAAAGGAGA-ttttactatttact-t--tttttttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1996576 44 - 2193130 gtttaacaatctcaaaggagatttttactctttac--T--TTTTTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30066759 45 - 77216781 GTTTAACAATTCCAAAGGAGATTtttactatttact-g--tttttttt i rheMac8.chr16 I 10 C 0 s macFas5.chr16 27979377 48 - 80997621 GTTTAACAATTCCAAAGGAGATttttactatttactggtttttttttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2037110 47 + 10377808 GTTTAACAATTCCAAAGGAGAtttttactatttact-gtttttttttt i macNem1.NW_012014910v1 I 10 C 0 s cerAty1.NW_012006043v1 1923009 37 - 8458610 gtttaacaatcccaaaggagatttttactatttact-g---------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64878530 47 + 75148670 GTTTAACAATCCCAGAGGAGAtttttactatttact-gtttttttttg i chlSab2.chr16 C 0 I 9 s manLeu1.NW_012106252v1 2108041 47 + 4244037 gtttaacaatcccaaaggagatttttactatttact-gtttttttttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2130444 40 + 4569836 GTTTAACAATCCCAAAGGAGATTtttactatttact-g-------ttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103181 44 - 159171411 GTGTAACTATCTCAAAGGAGATTTTTACTACTTTTT-T---CTTTTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1813378 44 + 3513951 gtttaacaatctcaaaggagatttttACTACTTTTT-T---TTTTTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1862273 43 + 1920343 GTTTAACAATCTCAAAGGAGATTTTTGCTACTTTTT-T----TTTTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6977286 39 - 7032639 GTTTAACAATCTCAAAGGAGATTTTTGCCACTT---------TTTTTT i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 386667 41 - 852752 gtttagagttctctgaggaccctttga--aattatt-g--tttttt-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e canFam3.chr9 21402489 5048 + 61074082 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=1002701.000000 s hg38.chr17_GL383564v2_alt 85239 132 + 133151 tactattttactatttactattatttactattataattttAAAATTAGAGCCCA---------CTAAGAGATAGATAGTTCAG------------CTTTTT-------------------AAAGTTTTC---CTTTAACAACAAGCATCCTTT----Atttttctagttcaccttttta s panTro5.chr17 16271819 128 + 83181570 tactattttactatttactattatttactattataattttAAAATTagagccca---------ctaag----agatagttcag------------cttttt-------------------aaagttttc---ctttaacaataagcacccttt----atttttctagttcaccttttta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16179269 128 + 83442489 tactattttactatttactattatttactattataattttAAAATTagagccca---------ctaag----agatagttcag------------cttttt-------------------aaagttttc---ctttaacaataagcacccttt----atttttctagttcaccttttta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4014305 127 + 4267968 tactattttactatttactattatttactatta-aattttAAAATTagagccca---------ctaag----agatagttcag------------cttttt-------------------aaagttttc---ctttaacaataagcatccgtt----atttttctagttcaccttttta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1996620 128 - 2193130 TACTATTTTACTATTTACTATTATTTACTATTATGATTTTAAAATTagagccca---------ctaag----agatagttcag------------cttttt-------------------aaagttttc---ctttaacaataagcatccttt----atttttctagttcaccttttta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30066804 122 - 77216781 tttttttttactattt--tactatttactattataattttaAAATTAGAG-------------CTAAG----AGATAGTTTAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27979425 122 - 80997621 tttttttttacttttt--tactatttactattataattttaAAATTAGAG-------------CTAAG----AGATAGTTCAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2037157 107 + 10377808 tttttttttactattt--tac---------------ttttAAAATTAGAG-------------CTAAG----AGATAGTTCAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1923046 122 - 8458610 ttttttttttctattt--tactatttactattataattttaAAATTAGAG-------------CTAAG----AGATAGTTCAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64878586 122 + 75148670 ttgttttttactattt--tactatttattattataattttAAAATTAGAG-------------CTAAG----AGATAGTTCAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i chlSab2.chr16 I 9 C 0 s manLeu1.NW_012106252v1 2108088 112 + 4244037 ----------ctattt--tactatttactattataattttaAAATTAGAG-------------CTAAG----AGATAGTTCAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2130484 122 + 4569836 tttttttaaactattt--tactatttactattataattttaAAATTAGGG-------------CTAAG----AGATAGTTCAG------------CTTTTC-------------------AAAGTTTTC---CTTTAACAATAAGCATACTTT----Atttttctagttcacattttta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103225 132 - 159171411 TACAATTTTACTATTT--CAATATTAACTATTA---TTTTAAAATCAGAGTCTGCAagagcccaaaaa----agatagttatg------------cttttt-------------------aaagtcttc---ctttaacaataagcatacttt----attttactagtttaccttttta i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1813422 122 + 3513951 TACCATTTTACTATTT--CAATATTAACTATTA---TTTTAAAATCAGGGTCTACAAg--------------agatagtttag------------cttttt-------------------aaagtcttc---ctttaacaataagcatacttt----attttactagtttaccgtttta i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1862316 132 + 1920343 TACAATTTTACTATTT--CAATATTAACTATTA---TTTTAAAATCAGAGTCTACAAGAGCCCTCAAg----agatagtttag------------cttttt-------------------aaagtcttc---ctttaacaataagcatacttt----attttactagtttaccttttta i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6977325 132 - 7032639 CACAATTTTACTATTT--TAATATTAACTATTA---TTTTAAAATCAGAGTCTACAAGATCCCACAAg----agatagttcag------------cttttt-------------------aaaatcttc---ctttaacaataagcatacttt----attttactagtttaccttttca i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21407537 131 + 61074082 tattttttgactggcttcttttacatagcataatg-ttttaaaTTTAGAGCCCA---------ACAAG----AGACAGTTCAG--------------TCTA-------------------AAAATTTTTTTGCTGTGACGACGAGCATACTTTTTTCttttttctag-tcacctttcca i canFam3.chr9 I 5048 C 0 s dasNov3.JH570468 386708 109 - 852752 -----------------------------------------aatttagagctca---------gtaag----agacagTTAAAAAAACGTAAAAAAATTTCAAAAAAGAGATGATTAAAAAAAACcttc---ctgtgactatgagcatagctg----ttttttcctttcc--------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e otoGar3.GL873537 22791395 2993 + 28711273 I a score=6772853.000000 s hg38.chr17_GL383564v2_alt 85371 596 + 133151 ctaagggtttagtgtttagagagacttgca-tcgtt-cggtggtctccgcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTTTAGTCTAATTTATCCTCtttcagtttagactc-tttcacaagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaagttatcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtaactccagcatgctaAGCCTGTAGGCTTTATCTGACTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATCCCTTATGTGTATGTGGGAAGTATAGTCTATGGATGCGGGTCAATATGAGGTGGTTCTAGCAGCCAA---TCTTGGACCAT------G-----------GGCTAGCAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTACTCCTCCTTGTCTTCTCCTTCACCCGAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATTCCTTCTTAGTAGCTCACCTTTGGAATGGACAAAGTCAGCAGATATCACAAGGGCATGAATGCCGATCACAACAAAGAC-TTTATTTCT---AGAACAG s panTro5.chr17 16271947 595 + 83181570 ctaagggtttagtgtttagagagacttgca-tcgtt-tggtggtctccgcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTTTAGTCTAATTTATCCTCtttcaatttagactc-tttcacaagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaagttattccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtaactccagcatgctaAGCCTGTAGGCTTTATCTGACTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATCCTTTATGTGTATGTGGGAAGTATAGTCTATGGATGCGGGTCAATATGAGGTGGTTCTAGCAGCCAA---TCTTGGACCAC------G-----------GGCTAGCAGTCAA-TGGCAG-ATGTTTCTCCAAGGGTTATTCCTCCTTGTCTTCTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATTCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGATGTCACAAGGGCATGAATGCCGATCAAAACAAAGGC-TTTATTTCT---AGAACAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16179397 595 + 83442489 ctaagggtttagtgtttagagagacttgca-tcgtt-tggtggtctccgcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTTTAGTCTAATTTATCCTCtttcaatttagactc-tttcacaagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaagttattccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtaactccagcatgctaAGCCTGTAGGCTTTATCTGACTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATCCTTTATGTGTATGTGGGAAGTATAGTCTATGGATGCGGGTCAATATGAGGTGGTTCTAGCAGCCAA---TCTTGGACCAC------G-----------GGCTAGCAGTCAA-TGGCAG-ATGTTTCTCCAAGGGTTATTCCTCCTTGTCTTCTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGGTTGATTTCCCTTCATTCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGATGTCACAAGGGCATGAATGCCGATCACAACAAAGGC-TTTATTTCT---AGAACAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4014432 596 + 4267968 ctaagggtttagtgtttagagagacttgca-tcgtt-cggtggtctccgcctgaactcccTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTTTAGTCTAATTTATCCTCtttcaatttagactc-tttcacaagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaagttatcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtaactccagcatgctaAGCCTGTAGGCTTTATCTGACTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATCCTTTATGTGTATGTGGGAACTATAGTCTACGGATGCGGGTCAATATGAGGTGGTTCTAGCAGCCAA---TCTTGGACCAT------G-----------GGCTAGCAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTACTCCTCCTTGTCTTCTCCTCCACCCGAAGCTCAGA-CCTCATGCCAGTCAATTAATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATTCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGATGTCACAAGGGCATGAATGCCGATCACAACAAAGGC-TTTATTTCT---AGAACAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1996748 599 - 2193130 ctaagggtttagtgtttagagagacttgca-tcgtt-cagtggtctccgcctgaactctcTCATAAAGACTAAAAGGCTTAT---------CCT--------ATTTCTTTAGTCTAATTTATCCTCtttcaatttagactc-tttcataagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaagttatcccatttttaaaatgaaa--gagttgactgaaatgaccagttaggtcctt--------ggtaactccagcatgctaAGCCTGTAGGCTTTATCTGATTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATCCTTTATGTGTATGTGGGAAGTATAGTCTATGGATGCGGGTCAATATGAGGTGGTTCCAGCAGCCGA---TCTTGGACCAT------G-----------GGCTAACAGTCAA-TGGCAGAATGTTTCTTCAAGGGTTACTCCTCCTTGTCTTCTCCTTCACCAGAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAATGCCGATCACAACAAAGGC-TTTATTTCTAGGAGAACAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30066926 596 - 77216781 ctaagggtttagtgtttagagagacttact-tcatt-cagtggtctcagcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CGT--------ATTTCTCTAGTCTACTTTATCCTTTTTCAATTTAGACTG-TTTcacaagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaaattgtcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccagcatgctaagcttgtaGTCTTTATCTGATTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATTCTTTATATGTATGTGGGAGGTATAGTCTATGGGTGCGGGTCAA-ATGAGGTGGTTCTAACAGCTGA---TCTTGGACCAT-------------------TCTAGTAGACAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCTTCCTTGTCTTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATTCCTTCTTAGTAGTTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCCGATCACAACAAAGGC-TTTATTTCTAGGACAACAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27979547 596 - 80997621 ctaagggtttagtgtttagagagacttacc-tcatt-cagtggtctcagcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CGT--------ATTTCTCTAGTCTACTTTATCCTTTTTCAATTTAGACTG-TTTCACAAGCTctc--tgcaagtttgggcaagtcacttccccttttgggtcaaaattgtcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccagcatgctaAGCTTGTAGTCTTTATCTGATTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATTCTTTATATGTATGTGGGAGGTATAGTCTATGGGTGCGGGTCAA-ATGAGGTGGTTCTAACAGCTGA---TCTTGGACCAT-------------------TCTAGTAGACAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCTTCCTTGTCTTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATTCCTTCTTAGTAGTTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCCGATCACAACAAAGGC-TTTATTTCTAGGACAACAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2037264 596 + 10377808 ctaagggtttagtgtttagagagacttacc-tcatt-cagtagtctcagcctgaactctcTCATAAGGACTAAAAGCCTTAT---------CGT--------ATTTCTCTAGTCTACTTTATCCTTTTTCAATTTAGACTG-TTTCACAAGCTctc--tgcaagtttgggcaagtcacttccccttttgggtcaaaattgtcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccagcatgctaAGCTTGTAGTCTTTATCTGATTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATTCTTTATATGTATGTGGGAGGTATAGTCTATGGGTGCGGGTCAA-ATGAGGTGGTTCTAACAGCTGA---TCTTGGACCAT-------------------TCTAGTAGACAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCTTCCTTGTCTTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATTCCTTCTTAGTAGTTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCCGATCACAACAAAGGC-TTTATTTCTAGGACAACAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1923168 596 - 8458610 ctaagggtttagtgtttagagagacttacc-tcatt-cagtggtctcagcctgaactctcTCATAAAGACTAAAAGCCTCAT---------CCT--------ATTTCTCTAGTCTACTTTATCCTTTTTCAATTTAGACTG-TTTcacaagctctc--tgcaagtttgggcaagtcacttccccttttgggtcaaaattgtcccatttttaaaacgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccagcatgctaagcttgtaGTCTTTATCTGATTTAGGTAGTATTTCCAGAAAAGAA----ATTTAATTATTCCCTATATGTATGTGGGAGGTATAGTCTATGGATGCGGGTCAA-ATGACGTGGTTCTAGCAGCTGA---TCGTGGACTAT-------------------TCTAGTAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCCTCCTTGTCTTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCCAATCACAACAAAGGC-TTTATTTCTAGGACAACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64878708 567 + 75148670 ctaagggtttagtgtttagagggacttacc-tcatt-cagtggtctcagcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTC-----------------------------CTG-TTTCACAAGCTCTC--TGCAAGTCtgggcaagtcacttccccttttgggtcaaaattgtcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccagcatgctaAGCTTGTAGTCTTTATTTGACTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATTCTTTATACGTATGTGGGAGGTATAGTCTATGGATGCGGGTCAA-ATGAGGTGGTTCTAGCAGCTGA---TCTTGGACCAT-------------------TCTAGCAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCCTCCTTGTCCTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGAAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCCGATCACAACAAAGGT-TTTATTTCTAGGACAACAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2108200 596 + 4244037 ctaagggttcagtgtttagagagacttacc-tcatt-cagtggtctcagcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTCTAGTCTACTTTATCCTTTTTCAATTTAGACTG-TTTCACAAGCTctc--tgcaagtttgggcaagtcacttccccttttgggtcaaaattgtcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccagcatgctaAGCTTGTAGTCTTTATCTGATTTAGGTAGTATTTCCAGAAAAGAA----ATTTAATTATTCTCTATATGTATGTGGGAGGTATAGTCTATGGATGCGGGTCAA-ATGACGTGGTTCTAGCAGCTGA---CCGTGGACTAT-------------------TCTAGTAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCCTCCTTGTCTTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCTGATCACAACAAAGGC-TTTATTTCTAGGGCAACAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2130606 596 + 4569836 ctaagggtttagtgtttagagagacttacc-tcatt-cagtggtctcagcctgaactctcTCATAAAGACTAAAAGCCTTAT---------CCT--------ATTTCTCTAGTCTAATTTATCCTTtttcaattcagactg-tttcacaagctctc--tgcaagtttgggcaagtcacttctccttttgggtcaaaattgtcccatttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt--------ggtagctccaacatgctaagcttgtaGTCTTTATCTGACTTAGATAGTATTTCCAGAAAAGAA----ATTTAATTATTCTTTATATGTATGTGGGAGGTATAGTCTATGGATGCGGGTCAA-ATGAGGTGGTTCTAGCAGCTGA---TCTTGGACCAT-------------------TCTAGCAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCCTCCTTGTCTTTTCCTTCACCCAAAGCTCAGA-CCTCATGCCAGTCAATTAATGAGCTATAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGTTGTCACAAGGGCATGAGTGCCGATCACAACAAAGGC-TTTATTTCTAGGACAATAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103357 601 - 159171411 ctaagggtgtagtgtttagagagatttaca-tcatt-tggtggtcttagcccgaattctctcataaagactaaaagccttat---------ccc--------ACTTCTCTAGTCTAATTTATCCTTTTTCAATTTAGACGc-tttcacaagctctc--tgtttgtttgggcaagtcactttttcttttgggtcagagttatcccagttttaaaatgaaa--gagttcagtgaaatgaccagttaggtccttGGTAGGTAGGTAGCTCCAGCATGCTAAGCTTGTAGGTTTTATGTGACTTAGATAGTATTTTCAGAGAAGAA----ATTTAATTATCCTCTATGTGTA--TGGGAAGTATAGTTTACAGATGCGAGTCAATATGAGGTGGTTCTAGCAGCCGA---T-TTGGACCAT------G-----------GGCTAGCAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCCTCCCTGTCTTTTCCTTCACCCGAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTAAAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAACAGTTATCATTAGGGCATGAATGCCGATCACAGCAAAGGC-TTTATTTGTAGGACAA--- i calJac3.chr5 C 0 I 3 s saiBol1.JH378271 1813544 589 + 3513951 ctaagggtgtagtgtttagagagacttgca-tcatt-cagtagtcttagcccgaattctctcataaagactaaaggccttgt---------ccc--------ATTTCTTTAGTATAATTTATCCTTTTTCAATTTAGACAC-TTTCACAAGC----------TGTttgggcaagtcccttcttcttttgggtcaaagttatcccagttttaaaatgaaa--gagttgagtgaaacgaccagttaggtcctt----ggtaggtagctccagcattctaGGCTCGTAGGTTTCATGTGACTTAGATAGTATTTTCAGAAAAGAA----ATTTAATTATCCTTTATGTGTA--TGGGAAGTATAGTTTACAGATGCGGGTCAATATGAGGTGGTTCTAGCAGCTGA---T-TTGGACCAT------G-----------AGTTAGCAGTCAA-CAGCAGAATGTTTCTCCAAGGTTTGCTCCTCCTTGTTTTTTCTTTCACCTGAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTAAAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTTAGCAGTTATCATAAGGGCATGAATGCCAATCACAACAAAGGC-TTTATTTGTAGGACAA--- i saiBol1.JH378271 C 0 I 3 s cebCap1.NW_016107730v1 1862448 585 + 1920343 ctaagggtgtagtgtttagagagacttgca-tcatt-cagtggtcttagcccaaattctcTCATAAAGACTAAAAGCCTTAT---------CCC--------ATTTCTCTAGTCTAATTTATCCTTTTTCAATTTAGACAC-TTTCacaagc------tgtttgtttgggcaaatcacttcttcttttgggtcaaagctatcccagttttaaaatcaaa--gagttgagtgaaatgaccagttaggtcctt----GGTAGGTAGCTGCAGCATGCTAGGCTTGTAGGTTTTATGTGACTTAGATAGTATTTTCAGAAAAGAA----ATTTAATTTTCCT-TATGTATA--TGGGAAGTATAGTTTATAGATGCGGGTCAATACGAGGTGGTTCTAGCAGCTGA---T-TTGGACCAT------C-----------AGCTAGCAGTCAA-TGACAGAATGTTTCTCCAAGGGTTGCTCCTCCTTGTCTTTTCCTTCACCTGAAG--------CTCATGCCAGTCAATTCATGAGCTAAAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGTTATCATAAGGGCATGAATGCCAATCACAACAAAGGC-TTTATTTGTAGGACAG--- i cebCap1.NW_016107730v1 C 0 I 12 s aotNan1.NW_018502359v1 6977457 593 - 7032639 ctaagggtgcagtgtttagagagacttgca-tcatt-cagtggtcttagcccgaattctcTCATAAAGACTAAAAGCCTTAT---------CCC--------ATTTCTCTAGTCTAATTTATCCCTTTTCAATTTAGAcac-tttcacaagc------tgtttgtttgggcaagtcacttcttcttttgggtcaaagttatcccagttttaaaatgaaa--gagttgagtgaaatgaccagttaggtcctt----GGTAGGTAGCTCCAGCATGCTAAGCTTGTAGGTTTTATGTGACTTAGATAGTATTTTCAGAAAAGAA----ATTTAATTATTCTTTATGTGTA--CGGGAAGTATAGTTTACAGATGCGGATCAATATGAGGTGGTTCTAGCAGCTGA---T-TTGGACCAT------G-----------GGCTAGCAGTCAA-TGGCAGAATGTTTCTCCAAGGGTTGCTCCTCCTTGTCTTTTCCTTCACCTGAAGCTCAGA-CCTCATGCCAGTCAATTCATGAGCTAAAGGT-----------------AGCTTGATTTCCCTTCATCCCTTCTTAGTAGCTCACCTTTGGAATGGGCAAAGTCAGCAGTTATCATAAGGGCATGAATGCCAATCACAACAAAGCC-TTTATTTGTAGGACAA--- i aotNan1.NW_018502359v1 C 0 I 3 s otoGar3.GL873537 22794388 606 + 28711273 CCAAGGGTGTAATATTTTGAAGGACTTGCA-TTTCT-GAGTGGTCTTAGTTATAAATCTCTCATACAGACTCAAAGCCTTGT---------CCTCCTGCCTCCTTTCTTTGGTCTAACATGTATTTttctaattcggacta-tttcacaaactctctgtgtgagtttgggcaagtcacctccctttttgagtcaaagttat-ccatttttaaaatgaga--gagttgggtgaaatgaccagttaggtcctc--------agcagctcccacatgttaagattgtaggcttcATCTGATTTAGCTACTATTTCCGGAAAAGAGAGTCATTCCATCATCCTTTGTCTTTATGCAGGAAGTCTATTTTAAGGATGTAGGTCAGGATGAAGTCATTCTAACACCCCA---TCCTGGATTGT------G-----------GGCCATCAGTTAA-GGGCAGAATGTTGCATCAGGAGT---TCCTTCTTGTCTTTTCCTTCA-CAGAAGCTCAGA-CCGTATGCTA-TCAATTCAAGAGCTACAAGC-----------------AGCTTGGTCTCCCTTCATCACATCTTAAAAACTCACCTTTGGAAATAGCAAAGTCAGCAGTACTCACAAGGGTGTTAATGCC-ATCATGATGAAGCT-TTTATTTCTAGGATAATAA i otoGar3.GL873537 I 2993 C 0 s canFam3.chr9 21407668 616 + 61074082 ctaaaggtacagtcttttggtagatatggg-tttttccagtagtctgagctccagctctgttacatggactgaaggtcttgt---------ccc--------ctgtcccTTAC---ATTTACTGTTTTCTGACCTAGACTCTTTTcaccaactctctttgtgacctagagcaagtcacttcctcttgagggtcaatgttttcccatttgcaacat-------agttgggtgagatgaccacttgagctcct--------ggtggctcctacattctaagattctaggcttcATCTGACTCAGACACAATTTTCAGAGGAGAA----ATTTTATCATACTTTATTTGTG--TGGGAAGTCGATTCTTAGGACAT-ACTCAGTGTGAGGTCATACTTGATCTTGG---AATTGGACTATTTGATTT-----------GGCTGGCAGCCAACTGGCAGAACATTTTTCCAAGGATTTCTCCT-CTTGACATTTTCTTTGCCTGAAGCTCATATCCAAACCTCAGTCACTTTATGAACTACAAGTTGTTTGATCCCATAGGAAGCTTGGTGTCCCTTCATCACTCCCTAATAGCTCCTCTTCAGAATTGGCGAAGTCAGCAGTTATCACAAGGGTGTAAATGTCAATCATGACAAAGCC-TTTATTTCTAGAACAACAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 386817 591 - 852752 ctaagagtgcagtacctcaagggacttgcatttata-tgctggtccccggttcaagtctgtcacaaacactg-aggccttgtaccctgtcccTC--------ATTTCGTTAGCCTAATTTATCCTTtttcaatttagactg-tttcacaaactctgtgtgtgggcttggg-aagtcacgtccccctttgtatcaaggtt-tcccacttgtgaaatgagACCAAGT---GTGAGATGAC-------------------------ATTCTGACATTCTGAGAATTTGGGCTTCATCCGA--TGGTCACTATTTCCAGGAGAGAA---------ATCATCCTTTCTTTG----TGGGAAGTCTGTCTGAAGGATGCGACTCAGGGTGAGGTGATCCCAGCACCCGAGCTTCTTGGACAGT------GGGCCGGCAGTTGGCTGGCAGTCAG-CTGGAGGACATTTTTCCAAGCGATGCTCCCCTCAGGCTTTTTCCTCAGTCT-AGCTCAGC-TCACTTGTCAGCCAATTCATCAGCCAAGGGCTGCTTGATCCACAGGA-AGCTTGGTTTCCCTTCA------------------CCTTCAGCACTGGCAAAGTCAGCAGTTGTCATAGGGGTGTGGAAGCCAGTTACGGCAAAGGCTTTTATTTCCACAACTCCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=103097.000000 s hg38.chr17_GL383564v2_alt 85967 9 + 133151 GCTCAAGTG s panTro5.chr17 16272542 9 + 83181570 GCTCAAGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16179992 9 + 83442489 GCTCAAGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015028 9 + 4267968 GCTCAAGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997347 9 - 2193130 GCCCAAGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30067522 9 - 77216781 GCTCAAGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27980143 9 - 80997621 GCTCAAGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2037860 9 + 10377808 GCTCAAGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1923764 9 - 8458610 GCTCAAGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64879275 9 + 75148670 GCTCAAGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2108796 9 + 4244037 GCTCAAGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2131202 9 + 4569836 GCTCAAGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103961 9 - 159171411 GCTCAAGTG i calJac3.chr5 I 3 C 0 s saiBol1.JH378271 1814136 9 + 3513951 GCTCAAGTG i saiBol1.JH378271 I 3 C 0 s aotNan1.NW_018502359v1 6978053 9 - 7032639 GCTCAAGTG i aotNan1.NW_018502359v1 I 3 C 0 s otoGar3.GL873537 22794994 9 + 28711273 GCTCTTGTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21408284 7 + 61074082 GCTCAAG-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 387408 9 - 852752 GCTCAAGGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e cebCap1.NW_016107730v1 1863033 12 + 1920343 I a score=5088.000000 s hg38.chr17_GL383564v2_alt 85976 1 + 133151 T s panTro5.chr17 16272551 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180001 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015037 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997356 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30067531 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27980152 1 - 80997621 T i macFas5.chr16 C 0 I 961 s macNem1.NW_012014910v1 2037869 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1923773 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64879284 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2108805 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2131211 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22795003 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21408291 1 + 61074082 T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 387417 1 - 852752 T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e aotNan1.NW_018502359v1 6978062 0 - 7032639 C e cebCap1.NW_016107730v1 1863033 12 + 1920343 I e saiBol1.JH378271 1814145 0 + 3513951 C e calJac3.chr5 46103970 0 - 159171411 C a score=25249.000000 s hg38.chr17_GL383564v2_alt 85977 3 + 133151 AAT s panTro5.chr17 16272552 3 + 83181570 AAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180002 3 + 83442489 AAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015038 3 + 4267968 AAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997357 3 - 2193130 AAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30067532 3 - 77216781 AAt i rheMac8.chr16 C 0 I 1290 s macFas5.chr16 27981114 3 - 80997621 AAT i macFas5.chr16 I 961 I 1 s macNem1.NW_012014910v1 2037870 3 + 10377808 AAt i macNem1.NW_012014910v1 C 0 I 955 s cerAty1.NW_012006043v1 1923774 3 - 8458610 AAT i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64879285 3 + 75148670 AAT i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2108806 3 + 4244037 AAT i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2131212 3 + 4569836 AAT i colAng1.NW_012122154v1 C 0 I 1 s otoGar3.GL873537 22795004 3 + 28711273 AGT i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21408292 3 + 61074082 AAC i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 387418 3 - 852752 AAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e aotNan1.NW_018502359v1 6978062 0 - 7032639 C e cebCap1.NW_016107730v1 1863033 12 + 1920343 I e saiBol1.JH378271 1814145 0 + 3513951 C e calJac3.chr5 46103970 0 - 159171411 C a score=-103.000000 s hg38.chr17_GL383564v2_alt 85980 1 + 133151 G s panTro5.chr17 16272555 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180005 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015041 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997360 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s dasNov3.JH570468 387421 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e canFam3.chr9 21408295 1 + 61074082 I e otoGar3.GL873537 22795007 1 + 28711273 I e aotNan1.NW_018502359v1 6978062 0 - 7032639 C e cebCap1.NW_016107730v1 1863033 12 + 1920343 I e saiBol1.JH378271 1814145 0 + 3513951 C e calJac3.chr5 46103970 0 - 159171411 C e macNem1.NW_012014910v1 2037873 955 + 10377808 I e colAng1.NW_012122154v1 2131215 1 + 4569836 I e manLeu1.NW_012106252v1 2108809 1 + 4244037 I e chlSab2.chr16 64879288 1 + 75148670 I e cerAty1.NW_012006043v1 1923777 1 - 8458610 I e rheMac8.chr16 30067535 1290 - 77216781 I e macFas5.chr16 27981117 1 - 80997621 I a score=1304641.000000 s hg38.chr17_GL383564v2_alt 85981 203 + 133151 TAGTAATTATATTGGAACAGGAGCCTCCTAGGC---TTTTT------------------------TTTTTTAATAACTCATTGTTCCTCTAGAAGATTTGCAAGAATTTCCTTCTGAAATTTTAAATGTAAATTTTA---TTTTGTTTA-TTGTGCAGAAGTAACAT--ATATTTTCAAAGAATTTGG------------------------AGAGAAGAAAA------------------AAAACATTCATAATCCTGTCATTTAATAGCATCCAGT s panTro5.chr17 16272556 205 + 83181570 TAGTAATTATATTGGAACAGGAGCCTCCTAGGC---TTTTT------------------------TTTTTTAATAACTCATTGTTCCTCTAGAAGATTTGCAAGAATTTCCTTCCGAAATTTTAAACGTAAATATTA---TTCTGTTTA-TTGTGGAGAAGTAACACAAATATTTTCAAAGAATTTGG------------------------AGAGAAGAAAA------------------AAAGCTTTCATAATCCTGTCATTTAATAGCATCCAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180006 207 + 83442489 TAGTAATTATATTGGAACAGGAGCCTCCTAGGC-TTTTTTT------------------------TTTTTTAATAACTCATTGTTCCTCTAGAAGATTTGCAAGAATTTCCTTCCGAAATTTTAAATGTAAATTTTA---TTCTGTTTA-TTGTGGAGAAGTAACACAAATATTTTCAAAGAATTTGG------------------------AGAGAAGAAAA------------------AAAGCATTCATAATCCTGTCATTTAATAGCATCCAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015042 204 + 4267968 TAGTAATTATATTGGAACAGGAGCCTCCTAGGC----TTTT------------------------TTTTTTAATAACTCATTGTTCCTCTAGAAGATTTGCAAGAATTTCCTTCTGAAATTTTAAATGTAAATTTTA---TTTTGTTTA-TTGTGCAGAAGTAACACATATATTTTCAAAGAATTTGG------------------------AGAGAAGAAAA------------------AAAGCATTCATAATCCCATCATTTAATAGCATCCAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997361 204 - 2193130 TAGTAATTATATTGGAACAGGAGCCTCCTAGAC----TTTT------------------------TTTTTAAATAACTAATTGTTCCTCTAGAGGATTTGCAAGAATTTCCTTCTGAAATTTTAAATGTAAATTTTA---TTTTGTTTA-TTGTGCAGAAGTAACACATATATTTTCAAAGAATTTGG------------------------AGAGAAGAAAA------------------GAAGCATTCATAATCCTGTCGTTTAACAGCATCCAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30068825 230 - 77216781 TAGTAACTATATTGGAACAGGAGCCTTGTAGGttttttttg-ttttttttgtttttgtttttttgttttttAACAACTCATTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTAA---TTTTGTTTA-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGCTGAAAA-------------------ACGCATTCATAATCCTGTTGTTTAACAGCATCCAGT i rheMac8.chr16 I 1290 C 0 s macFas5.chr16 27981118 230 - 80997621 TAGTAACTATATTGGAACAGGAGCCTTGTAGGttttttttg-ttttttttgtttttgtttttttgttttttAACAACTCATTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTAA---TTTTGTTTA-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGCTGAAAA-------------------AAGCATTCATAATCCTGTTGTTTAACAGCATCCAGT i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2038828 231 + 10377808 TAGTAACTATATTGGAACAGGAGCCTTGTAGGttttttttgtttttttttgtttttgtttttttgttttttAACAACTCGTTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTAA---TTTTGTTTA-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGCTGAAAA-------------------AAGCATTCATAATCCTGTTGTTTAACAGCATCCAGT i macNem1.NW_012014910v1 I 955 C 0 s cerAty1.NW_012006043v1 1923778 207 - 8458610 TAGTAACTATATTGGAACAGGAGCCTTGTAGGTTTTTTTTT------------------------TTTTTAAACAACTAATTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTTA---TTTTGTTTA-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGATGAAAA-------------------AAGCATTCATAATCCTGTTGTTTAACAGCATCCAGT i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64879289 218 + 75148670 TAGTAACTATATTGGAACAGGAGCCTTGCAGGGtttttttt-ttttttttttt------------ttttttAACAACTCATTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTTA---TTTTGTTTA-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGATGAAAA-------------------AAGCATTCATAATCCTGTTGTTTAACAGCATCAAGT i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2108810 209 + 4244037 TAGTAACTATATTGGAACAGGAGCCTTGTAGG----------ttttttttttt------------ttttttAACAACTCATTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTTA---TTTTGTTTA-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGATGAAAA-------------------AAGCATTCATAATCCTGTTGTTTAACAGCATCCAGT i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2131216 209 + 4569836 TAGTAATTACATTGGAACAGGAGCCTTGTAGGTTTTTTTTT-TT---------------------TTTTTAAACAACTCATTGTTCCTCTAGAAGATTTGTAAGAATTTCCTTCTGAAATTTTAAATGTGAATTTTA---TTTTGTTTG-TTGTACAGAAGTAACACATGTATTTTCAAAGAATTTGG------------------------AGAGATGAAAA-------------------AAACATTCATAATCCTGTTGTTTAACAGCATCCAGT i colAng1.NW_012122154v1 I 1 C 0 s otoGar3.GL873537 22795008 183 + 28711273 CAGTGACTATGTTGGGGTAGGAAACATATCATC--------------------------------TCCTTTTATAACTCACTGCTTCATTAGAAGACTTGTCACTATTTCTTTTTGCAATTTTTAATGTAAATTTTA---TTTTGTTAC-TTGTGTGAGAGCAA------------AAAAGTAT----------------------------AGAGAAAAAAA-------------------GAGCATTCATAATTCCACCATTTAAAGATATCCAGT i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21408296 234 + 61074082 TAGTGATTATATTTGAATAGGATCC---TGGATCCTTTATG-ACTTAACTAT-------------GTCCTTTATGACTTCTCATTTTTTTAGAAGACTTGTAAGAATTTCCTTTTGGATTTTTTAATGTAAATTTTA---TTTCTTTTGCTTGTGTAGAAGGAATAGATATATTTTCAAAAAATTTGG------------------------AGAGAACAAAAAAGTACAGAGAAGGGGGAAAAGCATTCAAAACTGTACCATTTAAAAACATCCAAT i canFam3.chr9 I 1 I 444 s dasNov3.JH570468 387422 224 - 852752 TAGTGATTATATTGCAATAGGAGCCTTACCTGA--------------------------------CTTTT--ATGAGTCCTTGGTTCTTTAGAAGACACGCAAGAACTTCCTTTTGGAATTTTTAATGCATTTTTTAATTtcttttttc-ctgtggagaagtaatgcatatgatttcaaaaaaatttgttgaaagaacaaaaaaaaaagtataaagaagagaa-------------------aagcatttataatctttccagttaaaagcacccact i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e aotNan1.NW_018502359v1 6978062 0 - 7032639 C e cebCap1.NW_016107730v1 1863033 12 + 1920343 I e saiBol1.JH378271 1814145 0 + 3513951 C e calJac3.chr5 46103970 0 - 159171411 C a score=2701017.000000 s hg38.chr17_GL383564v2_alt 86184 398 + 133151 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTCTC-AATT--GTCCCCATTTTAAT--------------------------AATAG-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCATATTGCTGTCGAGTAGGGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTAAATTACTCCAAATTGTTGGTATATAATTGTATCATCAACTTAGAAAT---AATTGAAATCAGAGA-----------------------GTTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGACTCATAATTCTTCTTCAACACAGCATATCTATGGTTAACAAG---ATG----------------TTTTTCTCACTGCCCTTGA-TTTCTGTCCTTAGGTAATAA s panTro5.chr17 16272761 398 + 83181570 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTCTC-AATT--GTCCTCATTTTAAT--------------------------AATAG-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCATATTGCTGTCGAGTAGGGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGAAGGGATATAATTATGTTTAAATTACTCCAAATTGTTGGTATATAATTGTATCATCAACTTAGAAAT---AATTGAAATCAGAGA-----------------------GGTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGATTCATAATTCTTCTTCAACACAGCATGTCTATGGTTAACAAG---ATG----------------TTTTTCTCACTGCCCTTGA-TTTCTGTCCTTAGGTAATAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180213 398 + 83442489 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTCTC-AATT--GTCCTCATTTTAAT--------------------------AATAG-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCATATTGCTGTCGAGCAGGGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGAAGGGATATAATTATGTTTAAATTACTCCAAATTGTTGGTATATAATTGTATCATCAACTTAGAAAT---AATTGAAATCAGAGA-----------------------GGTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGATTCATAATTCTTCTTCAACACAGCATGTCTATGGTTAACAAG---ATG----------------TTTTTCTCACTGCCCTTGA-TTTCTGTCCTTAGGTAATAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015246 397 + 4267968 ---GTCAT--------TGTGGTG--TGTTTTCC--TTAATCTCTC-AATT--GTCCTCATTTTAAT--------------------------AATAG-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCATATTGCTGTCGAGTAGGGTCG-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTAAATTACTCCAAATTGTTGGTATGTAATTGTATCATCAACTTAGAAAT---AATTGAAATCAGAGA-----------------------GGTAACAAGAAACTGTACTA-TGCTGAATTCTATCTTTATTTACACATTGACTCATAATTCTTCTTCAACACAGCATATCTATGGTTAACAAG---ATG----------------TTTTTCTCACTGCCCTTGA-TTTCTGTCCTTAGGTAATAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997565 395 - 2193130 ---GTCGT--------TGTGGTG--TGTTTTCT--TTAATCTCTCAAAAT--GTCCTCATTTTAAT--------------------------AATA-----------AA-TTTTGTTATGACTATCTTTTGTGTACCTTGGTCTGGATAAGCATATTGCTGTCGAGTAGGGTCA-CCATTGTTTGACCAATTGTTGTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTAAATTACTCCAAATTGTTGGTATATAATTGTATCATCAACTTAGAAATAACAATTGAAATCAGAGA--------------------------CACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGACTCATAATTCTCCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TTTTTCTCACTGCCCTTGA-TTTCTGTCCTTAGGTAATAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30069055 400 - 77216781 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTTTT-AATT--GTCCTCATTTTAAT--------------------------AACAA-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCAGATTGCTGTCGAGTAGAGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTCAATTACTCCAAATTTTTCATATATAATTGTATCATCAATTTAGAAATAACAATTGAAATCACAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACGTTGACTCATAATTCTTCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCACTGCCCTTGA-TTTCTGCCCTTATGTAATAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27981348 400 - 80997621 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTTTT-AATT--GTCCTCATTTTAAT--------------------------AACAA-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCAGATTGCTGTCGAGTAGAGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTCAATTACTCCAAATTGTTCATATATAATTGTATCATCAATTTAGAAATAACAATTGAAATCAGAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACGTTGACTCATAATTCTTCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCACTGCCCTTGA-TTTCTGCCCTTATGTAATAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2039059 400 + 10377808 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTTTT-AATT--GTCCTCATTTTAAT--------------------------AACAA-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCAGATTGCTGTCGAGTAGAGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTCAATTACTCCAAATTGTTCATATATAATTGTATCATCAATTTAGAAATAACAATTGAAATCAGAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACGTTGACTCATAATTCTTCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCACTGCCCTTGA-TTTCTGTCCTTATGTAATAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1923985 400 - 8458610 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTCTT-AATT--GTCCTCATTTTAAT--------------------------AACAA-------CTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTATTCTGGATAAGCAGATTGCTGTCGAGTAGAGTCA-CCATTGTTTGACCTATTGTTCTAAGTTGCTCC-AAACAGATGGTATATAA-TCTATATCTGATGGGATATAATTATGTTTCAATTACTCCAAATTGTTCATATATAATTGTATCATCAATTTAGAAATAACAATTGAAATCAGAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGACTCATAATTCTTCTTCACCACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCACTGCCCTTGA-TTTCTGTCCTTACGTAATAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64879507 400 + 75148670 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATTTCTT-AATT--GTTCTCATTTTAAT--------------------------AACAA-------TTTAA-TTTTGTAGTGACTATCTTTTGTGTACCTTACTCTGGATAAGCAGATTGCTGTCGAGTAGAGTCA-CAATTGTTTCACCTATTGTTCTAAGTTGCTCC-AAACAGATGGGATATAA-TCTATATCTGATGGGATATAATTATGTTTCAATTACTCCAAATTGTTCATATGTAATTGTATCATCAATTTAGAAATAACAATTGAAATCAGAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGACTCGTAATTCTTCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCACTGCCCTTGA-TTTCTGTCCTTACGTAATAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2109019 400 + 4244037 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTCTT-AATT--GTCCTCATTTTAAT--------------------------AACAA-------CTTAA-TTTTGTTGTGACTATCTTTTGTGAACCTTATTCTGGATAAGCAGATTGCTGTCGAGTAGAGTCA-CCATTGTTTGACCTATTGTTCTAAGTTGCTCC-AAACAGATGGTATATAA-TCTATATCTGATGGGATATAATTATGTTTCAATTACTCCAAATTGTTCATATATAATTGTATCATCAATTTAGAAATAACAATTGAAATCAGAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGACTCATAATTCTTCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCATTGCCCTTGA-TTTCTGTCCTTACATAATAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2131425 398 + 4569836 ---GTCAT--------TGTGGTG--TGTTTTCT--TTAATCTCTT-AATT--GACCTCATTTAAAT--------------------------AACAA-------TTTAA-TTTTGTTGTGACTATCTTTTGTGTACCTTACTCTAGATAAGCAGATTGCTGTTGAGTAGAGTCA-CCATTGTTTGACCAATTGTTCTAAGTTGCTCC-AAACAGATGGGATGTAA-TCTATATCTGATGGGATATAGTTATATTTCAATTA--CCAAATTGTTCGTATATAATTGTATCATCAATTTAGAAATAACAATTGAAATCAGAGA------------------------GTAACAAGAAACTGTACTATTGCTGAATTCTATCTTTATTTACACATTGACTTGTAATTCTTCTTCAACACAGCATATCTATGGATAACAAG---ATG----------------TCTTTCTCACTGCCCTTGA-TTTCTGTCCTTAGGTAATAG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22795191 404 + 28711273 ---GTCATCAGGGTACTATGGTGGTTGTTAGCTAGTAAACATCTT-CATTTAATACTCATTTAAATTTTGAATAAGGCATTAGCCTTCTAAAAATAATTTAGTTTTTAA-TTTTTCTATGACAATA-TTTGTGGACCTTATTTTGGATAAATGTATTACAATCAAGA-----CA-TCATTGTTTGACCAATTATTCTAAGTTGCCCCTAAACTGATGGGATATAATTCTATTTCTGATGGGATATAATTGTATCTGAATTACTCCAGACTGTTGGAATATAATTTTATCATCAACTTAGAAATAACAATTGAAATCAGAGA-----------------------GGCAACAAATAACCTCAGTACTGCCAAATTTTGTCTT-------------------------------------------TATGGATAATGAGTTTCTT----------------TTTTTCTTACTGCTTTTGG-CTTCTGTCCTTAGGTAATGG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21408974 421 + 61074082 ---GTCAT--------TATAATG--TGGTTCTT--TTTATCTTTC-ATTT--GTCCTCAATGTTAA--------------------------AATCATATAATATTTAG-GTTTGTTATGACTATA-TTTGTGTATTTTATTTTGGGTAAATATATTGCTCTTGAGTAGGATCA-TTATTGTTTG------TGTTCTAAGTCACTCC--GACTGATGGGACATTT-T--------------ACTTAA--ATATTTAAGTTCTTCCAAACTATTGGAACAAAATGATACCATCAGTTTAGAAATAATGATTGAAAAAAAAAAGAAACAATGATTGAAAGTAGGATGGTAATAAGGAAACTTAGTATCACTGAATTCTA---TTATTTCCATATTCACCCTTTATTTTCCTTCAACATGATATATTTATGGGTAACAAG---TGGGTTTTTTCTCCCCCCCCTTTTCTTATTGTCTTTGATTTTTTGCCCCTGGGCAGTGG i canFam3.chr9 I 444 I 1 s dasNov3.JH570468 387646 380 - 852752 gtcatcat--------tgtagtg--tggttctt--tTTCTCTCTC-AATT--GTCCTCGTTGTTAA--------------------------AATCA-------TGGGCTTTTTGTTATCGCTATTTTTC---TACCTCATTTTGG-TAAGTGTATTGTTACTGAGTAGGGTCAGCCATTTTACAAACTGTTTTTCTAAATTGCTCC-AAAGTGTTAGGATATAATTCTATATCTGATGGGATATAATTGTATCCAGATTTCTTCAAACCGATGAGATATAACCGTATCATCAACTTAGAAATAGTGACAGAAACCAGGGT-------------------------------------------TTGCCCAAGCCTATC---ATTTACCC------------TCCCTCCACAACAGTGCTTACATTGGGATAGCAAG---ATTTTGTTTTCCTTT----TTTTTCTCACTGCCTTTGA-TTTCAGGCCCTGGAGAGTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e aotNan1.NW_018502359v1 6978062 0 - 7032639 C e cebCap1.NW_016107730v1 1863033 12 + 1920343 I e saiBol1.JH378271 1814145 0 + 3513951 C e calJac3.chr5 46103970 0 - 159171411 C a score=120744.000000 s hg38.chr17_GL383564v2_alt 86582 8 + 133151 CAGATCAG s panTro5.chr17 16273159 8 + 83181570 CAGATCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180611 8 + 83442489 CAGATCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015643 8 + 4267968 CAGATCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997960 8 - 2193130 CAGATCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30069455 8 - 77216781 CAGATCAG i rheMac8.chr16 C 0 I 23 s macFas5.chr16 27981748 8 - 80997621 CAGATCAG i macFas5.chr16 C 0 I 7 s macNem1.NW_012014910v1 2039459 8 + 10377808 CAGATCAG i macNem1.NW_012014910v1 C 0 I 23 s cerAty1.NW_012006043v1 1924385 8 - 8458610 CAGATCAG i cerAty1.NW_012006043v1 C 0 I 23 s chlSab2.chr16 64879907 8 + 75148670 CAGATCAG i chlSab2.chr16 C 0 I 23 s manLeu1.NW_012106252v1 2109419 8 + 4244037 CAGATCAG i manLeu1.NW_012106252v1 C 0 I 23 s colAng1.NW_012122154v1 2131823 8 + 4569836 CAGATCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103970 8 - 159171411 CAGATCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814145 8 + 3513951 CAGATCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863045 8 + 1920343 CAGATCCG i cebCap1.NW_016107730v1 I 12 C 0 s aotNan1.NW_018502359v1 6978062 8 - 7032639 CAGATCAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22795595 8 + 28711273 CAGATCAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21409396 8 + 61074082 CAGATCAT i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 388026 8 - 852752 TAGATCAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=82269.000000 s hg38.chr17_GL383564v2_alt 86590 13 + 133151 ATTGTTTGTGAAA s panTro5.chr17 16273167 13 + 83181570 ATTGTTTGTGAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180619 13 + 83442489 ATTGTTTGTGAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015651 13 + 4267968 ATTGTTTGTGAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997968 13 - 2193130 ATTGGTTGTGAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 27981763 13 - 80997621 ACTGAttcttcaa i macFas5.chr16 I 7 I 3 s colAng1.NW_012122154v1 2131831 13 + 4569836 ATTGGTTGTGAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103978 13 - 159171411 ATTGGTTGTGAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814153 13 + 3513951 ATTGGTTGTGAAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863053 13 + 1920343 ATTGGTTGTGAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978070 13 - 7032639 ATTGGTTGTGAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22795603 13 + 28711273 AGTGGTTGTGAAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21409404 13 + 61074082 ATCGGTTGTGAAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 388034 13 - 852752 ATTGGTTATGAGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e macNem1.NW_012014910v1 2039467 23 + 10377808 I e manLeu1.NW_012106252v1 2109427 23 + 4244037 I e chlSab2.chr16 64879915 23 + 75148670 I e cerAty1.NW_012006043v1 1924393 23 - 8458610 I e rheMac8.chr16 30069463 23 - 77216781 I a score=1765073.000000 s hg38.chr17_GL383564v2_alt 86603 169 + 133151 TTCTTCAACATTTCAGTAGAATGGTGATTGG---GC-TGATAATGCAGtgggaatcagaagatctgggtcctagctagatgatactaagcaaggcatttctccattctgagcctcagtttcccc-ttcgt-aaaacgaacggtttggatgagttgaccattaggatcccCAATA----T s panTro5.chr17 16273180 169 + 83181570 TTCTTCAACATTTCAGTAGAATGGTGATGGG---GC-TGATAATGCAGtgggaatcagaagatctgggtcctagctagatgatactaagcaagccatttctccattctgagcctcagtttcccc-ttcgt-aaaacgaacggtttggatgagttgactattaggatcccCAATA----T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180632 169 + 83442489 TTCTTCAACATTTCAGTAGAATGGTGATGGG---GC-TGATAATGCAGtgggaatcagaagatctgggtcctagctagatgatactaagcaagccatttctccattctgagcctcagtttcccc-ttcgt-aaaacgaacggtttggatgagttgactattaggatcccCAATA----T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015664 169 + 4267968 TTCTTCAGCATTTCAGTAGAATGGTGATGGG---GC-TGATAATGCAGtgggaatcagaagatctgggtcctagctagatgatactaagcaagccatttctccattctaagcctcagtttcccc-ttcgt-aaaacgaacggtttggatgagttgaccattaggatcccCAATA----T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1997981 166 - 2193130 TTCTTCAACACTTCAGTAGAATGGTGATGGG---GC-TGATAATGCAGTGGGAATC---AGATCTCGGTCctagctagatgatactgggcaagccatttctccattctgagcctgagtttcccc-tttgt-aaaacgaaggggttggatgagttgaccattaggatcccCAATA----T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30069486 169 - 77216781 ttcttcaacatttcAGTAGGATGGTGATGGG---GA-TGATAATGCAGtgggaatcagaagatctgggtcctagctagatgata----gtttctccattctccattccgagcctcagtttcccc-tttgt-aaaatgaaggggttggatgagttgaccattaggatccccaatatctct i rheMac8.chr16 I 23 C 0 s macFas5.chr16 27981779 169 - 80997621 ttcttcaacatttcAGTAGGATGGTGATGGG---GA-TGATAATGCAGTGGGAATCAGAAGATCTGGGTCCTAGCTAGATGATA----GTTTCTCCAttctccattccgagcctcagtttcccc-tttgt-aaaatgaaggggttggatgagttgaccattaggatcccCAATATCTCT i macFas5.chr16 I 3 C 0 s macNem1.NW_012014910v1 2039490 169 + 10377808 ttcttcaacatttcAGTAGGATGGTGATGGG---GA-TGATAATGCAGTGGGAATCAGAAGATCTGGGTCCTAGCTAGATGATA----GTTTCTCCAttctccattctgagcctcagtttcccc-tttgt-aaaatgaaggggttggatgagttgaccattaggatcccCAATATCTCT i macNem1.NW_012014910v1 I 23 C 0 s cerAty1.NW_012006043v1 1924416 169 - 8458610 ttcttcaacatttcAgtaggatggtggtggg---ga-tgataatgcagtgggaatcagaagatctgggtcctagctagatgata----gtttctccattctccattctgagcctcagtttcccc-tttgt-aaaatgaaggggttggatgagttaaccattaggatcccCAATATCTCT i cerAty1.NW_012006043v1 I 23 C 0 s chlSab2.chr16 64879938 172 + 75148670 ttcttcaacatttcAGTAGGATGGTGATGGAGATGA-TGATAATGCAGTGGGAATCAGAAGATCTGGGTCCTAGCTAGATGATA----GCTTCTCCAttctccattctgagcctcagtttcccc-tttgt-aaaatgaaggggttgggtgagttgaccattaggatcccCAATATCTCT i chlSab2.chr16 I 23 C 0 s manLeu1.NW_012106252v1 2109450 169 + 4244037 ttcttcaacatttcAGTAGGATGGTGGTGGG---GA-TGATAATGCAGTGGGAATCAGAAGATCTGGGTCCTAGCTAGATGATA----GTTTCTCCAttctccattctgagcctcagtttcccc-tttgt-aaaatgaaggggttggatgagttgaccattaggatcccCAATATCTCT i manLeu1.NW_012106252v1 I 23 C 0 s colAng1.NW_012122154v1 2131844 169 + 4569836 TTCTTCAACATTTCAGTAGGATGGTGATGGG---GA-TGATAATGCAGTGGGAATCAGAAGATCTGGGTCCTAGCTAGATGATA----GTTTCTCCAttctccattctgagcctcagtttcccc-tttgt-aaaatgaaggggttggatgagttgaccactaggatccccaatatctct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46103991 170 - 159171411 TTCTTCAACATTTCAGTAGCACGGTGATGGG---GA-TGGTAATGCAGtgggaatcagaagatctggctcctaactagatgatactaagcaagtcatttcttcattcggatcctcagtttcccc-tttgt-aaaacaaa---gatggatgagatgaccattaagatcccCAATATCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814166 168 + 3513951 TTCTTCAACATTTCAgtagcatggtgatggg---ga-tggtaatgcagtgggaatcagaagatctgggtcctaactagatgatactaagcaagccatttcttcattctgagcct--gttttccc-tttgt-aaaaCAAA---GTTGGATGAGATGACCATTAAGATCCCCAATATCTCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863066 170 + 1920343 TTCTTCAACATTTCAgtagcatggtgatggg---gg-tggtaatgcagtgggaatcagaagatctgggtcctaactagatgatactaagcaagccatttctttgttctgagcctcagtttcccc-tttgt-aaaacaaa---gttggatgagatgaccattaagatccccaatatctct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978083 171 - 7032639 TTCTTCAACATTTCAgtagcatggtgatggg---ga-tggtaatgcagtgggaatcagaagatctaggtcctaactagatgatactaagcaagccatttcttcgttctgagcctcagtttcccc-tttgtaaaaacaaa---gttggatgagatgaccattaagatcccCAATATCTCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22795616 173 + 28711273 TTATTCAGTGTTTCCATAGCATGGCAATGGG---GC-TGG-AATGCAATGGGAATTGGCAGACTGGGGTCctaactaagtgataccaagcaagccagttctctatcccaagctgcagtttccctgtttgt-aaaatgaaggagctggatgaggtgaccattaatatccccaacatctct i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21409417 171 + 61074082 TTATTCAATATTTCTGCACTATGGTGATGGG---GACTGGGGATACAGTGGAGATGAGCAGATTCGGCTTctaacaatatgatctgaagtaagccatttctccattctgagtctcagtttcttcatttat-agaatgacaagcttggataagatgatcattaagatccctGATAT---- i canFam3.chr9 C 0 I 199 s dasNov3.JH570468 388047 80 - 852752 TTATTTAACAT---------------GTGTA---AA-TGCTA---------------------------------------------------------------------------tttccccacttat-aaaataagagggttagatgagataatcatgaagatccctCACTT---- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=2806253.000000 s hg38.chr17_GL383564v2_alt 86772 261 + 133151 --CTTGTTCCAAGA-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTAAGAGGGAGGAAGAGAAGAGCCAAATGCAAAGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAA--TCTGTTGTCTGCTTTATCCTCTGCTAGCAAGGACATAGGAAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCCCATA s panTro5.chr17 16273349 261 + 83181570 --CTTGTTCCAAGA-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGCAAGAGGGAGGAAGAGAAGAACCAAATGCAAAGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTAGGAGGCTTGGAA--TCTGTGGTCTGCTTTATCCTCTGCTAGCAAGGACATAGGAAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCCCATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16180801 261 + 83442489 --CTTGTTCCAAGA-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGCAAGAGGGAGGAAGAGAAGAACCAAATGCAAAGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTAGGAGGCTTGGAA--TCTGTGGTCTGCTTTATCCTCTGCTAGCAAGGACATAGGAAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCCCATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4015833 261 + 4267968 --CTTGTTCCAAGA-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTAAGAGGGAGGAAGAGAAGAGCCAAATGCAAAGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCCTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAA--TCTGTGGTCTGCTTTATCCTCTGCTAGCAAGGACATAGGAAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCCCATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1998147 261 - 2193130 --CTTGTTCCAAGA-TTTTCCCTCTCTCTTTTAACCATTTTCATACTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCAAAGCCATCTGGTTTTTGGTCTGTAGCTGTAACTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAA--TCTGTGGTCTGCTTCATCCTCTGCTAGTAAGGACATAGGAAGCCCCTCCTCTTTCTGGCCAATGTATGCCACCTCAGGCACATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30069655 263 - 77216781 --cttgttccaggg-ttttCCCTCTCTCTTTTAGCCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCGAAGCCATCTGGTTTTTGGTCTGTTGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAATCTCTGTCATCTGCTTCATCCTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCACATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27981948 263 - 80997621 --CTTGTTCCAGGG-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCGAAGCCATCTGGTTTTTGGTCTGTCGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAATCTCTGTCATCTGCTTCATCCTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCACATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2039659 263 + 10377808 --CTTGTTCCAGGG-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCGAAGCCATCTGGTTTTTGGTCTGTCGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAATCTCTGTCATCTGCTTCATCCTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCACATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1924585 263 - 8458610 --CTTGTTTCAAGG-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGGGCCAAATGCGAAGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAATCTCTGTCATCTGCTTCATCCTCTGCTAGCAAGGACATAGGGACCCCCTCCTCTTTCTGGCCAATGTATTCCTCCTCAGGCACATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64880110 263 + 75148670 --CTTGTTCCAAGG-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCGAGGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAATCTCTATCATCTGCTTCATCCTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCACATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2109619 263 + 4244037 --CTTGTTTCAAGG-TTTTCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCGAAGCCGTCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAGGCTTGGAATCTCTGTCATCTGCTTCATCCTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCACATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2132013 263 + 4569836 --cttgttccaagg-ttttCCCTCTCTCTTTTAACCATTTTCATATTTAGGATCTATGTTAGGAGGTGAGAGGGAGGAAGAGAAGAGCCAAATGCGAAGCCATCTGGTTTTTGGTCTGTAGCTGTAGCTGGGAGGCTTGGAAGCTGCTTGGATTGGTAGCTGTAGCTGGGAAGCTTGGAATCTCTATCGTCTGCTTCATCCTCTGCTAGCAAGGACATAGGGAGTCCCTCCTCTTTCTGGCCAATGTATGCCTCCTCAGGCACATA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46104161 225 - 159171411 --CTTGTTCCAAGG-ATTTCCCTCTCTTTTTTGACCATTTTCATATTTGGGACCTATGTTAGGAGATGAGAGGGACGAAGAGAAGAGCCAAATGCAAAGCCATCTGGTTTCTGATCTGTAGCTGTGGCTGGGAGGCTTGGAATC--------------------------------------TCTATGCTCTGCTTCATCCTCTGCTAGCAAGGACATAAGGAGCCCCTCCTCTTTCTGGGCAATTTATGCCTCCTCAGGCGCATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814334 225 + 3513951 --CTTGTTCCAAGG-TTTTCCCTCTCTCGTTTAATCATTTTCATATTTGGGACCTATGTTAGGAGATAAGAGGGAGGAAGAGAAGAGTCAAATGCAAAGCCATCTGGTTTCTGATCTGTAGCTGTGGCTGGGAGGCTTGGAATC--------------------------------------TCTATGCTCTGCTCCATCCTCTGCTAGCAAGGACACAGGGAGCCCCTCCTCTTCCTCGGCAATGTATGCCTCCTCAGGCACATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863236 221 + 1920343 --cttgttctaagg-ttttCCCTCTC----TTAACCATTTTCATATTTGGGACCTATGTTAGGAGATGAGAGGGAGGAAGAGAAGAGCCAAATGCAAAGCCATCTGGTTTCTGATCTGTAGCTGTGGCTGGGAGGCTTGGAATC--------------------------------------TCTATGCTCTGTTTCATCCTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTCGGCAATGTATGCCTCCTCAGGCACATA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978254 225 - 7032639 --CTTGTTCCAAGG-TTTTCCCTCTCTCATTTGACCATTTTCATATTTGGGACCTATGTTAGGAGATGAGAGGGAGGAAGAGAAGAGCCAAATGCAAAGCCATCTGGTTTCTGATCTGTAGCTGTGGCTGGAAGGCTTGGAATC--------------------------------------TCTATGCTCTGCTTCATTTTCTGCTAGCAAGGACATAGGGAGCCCCTCCTCTTTCTCGGCAATGTATGCCTCTTCAGGCACATA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22795789 239 + 28711273 --ctcattctaagattttTCTCTCTCTCATTTGACCACTTTGATATTTGGGATCTATATTAGAAGGTAGGAGATGGTAGAGGAAGAGCTGAATGCAAAGTACTCTGGTTTTTGATCTACAGCTGTAGCTGGGAGGCTTGGAATGTGCT--------------------GGGGATCAGCAAGCTCAGTACTCTGCCTTGTCCTCTGCT----AGGACAGAATGAGCCTCTCCCTTCCCTGGGCAGCATGTGCCTTCT-AGGCACATG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21409787 231 + 61074082 --CTTGTTCTAAGA-TTTTCCCTGTCTC---TGACAATTTTGACATTTGGTATCTACATTAGGGAGTGGAAGGGGAGAAG-GAAAAGTCAAATGCATGGCAGTCTGGGTTTGGATATGCAGCTACAGCTG--AGTCTTGGA------------------CTTTTGCTGTGAGCATCCTTC--TCTGAGTTCTGCTCTGTTCTCTGCTAGAACAACAATAAGGAGCCCATCCCCTCCCCAGACAACACAT------CTAGGCACACA i canFam3.chr9 I 199 C 0 s dasNov3.JH570468 388127 170 - 852752 CACTCTTTTCCAAG-ATTTCCCTCTCT-TCCCGACCACTTTGACATTTAGGATCTCCATGAGGAGGGGA-AGGGAGGCAAGTGAGAGCAAAATGCAGAGCAGCCTGCTTTTTGATCTGTAGTTATAGCTGTGAGGCTCAAA-----------------------------------------------------------TTCTGCTGGGGAGCAC----------------------------------CCTTCTCTGACCTCTA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=285397.000000 s hg38.chr17_GL383564v2_alt 87033 25 + 133151 CTTGAA-TTTTTTCCTCATTG--CCTCT-- s panTro5.chr17 16273610 25 + 83181570 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16181062 25 + 83442489 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4016094 26 + 4267968 CTTGAATTTTTTTCCTCATTG--CCTCT-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1998408 25 - 2193130 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30069918 25 - 77216781 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27982211 25 - 80997621 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2039922 25 + 10377808 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1924848 25 - 8458610 GTTGAA-TTTTTTCCTCATTG--CCTCT-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64880373 25 + 75148670 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2109882 25 + 4244037 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2132276 25 + 4569836 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46104386 25 - 159171411 CTTGAA-TTTTTTCCTTATTG--CTTCT-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814559 25 + 3513951 CTTGAA-TTTTTTCCTCATTG--CCTCT-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863457 25 + 1920343 CTTGAA-TGTTTTCCTCGTTG--CCTCT-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978479 25 - 7032639 CTTGAA-ATTTTTCCTCATTG--CCTCT-- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22796028 26 + 28711273 ATT-AA-TTTTTCCCTCATTGTCCCTCT-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21410018 27 + 61074082 ACTGAA-TTATTTCTTCATAG--TATCTCT i canFam3.chr9 C 0 C 0 e mm10.chr11 22063472 194 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 388297 0 - 852752 C a score=1632987.000000 s hg38.chr17_GL383564v2_alt 87058 148 + 133151 TTAGGATATCAAATAAGGCTCATCTTACATCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCACGGTCAGTTCAGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTACGAATCATCAAGTTCAAACAAGTCTGGC s panTro5.chr17 16273635 148 + 83181570 TTAGGATATCAAATAAGGCTCATCTTACGTCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCACGGTCAGTTCAGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTACGAATCATCAAGTTCAAACAAGTCTGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16181087 148 + 83442489 TTAGGATATCAAATAAGGCTCATCTTACGTCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCACGGTCAGTTCAGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTACGAATCATCAAGTTCAAACAAGTCTGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4016120 149 + 4267968 TTAGGATATCAAATAAGGCTCATCTTACATCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCACGGTCAGTTCAGATTAACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTATGAATCATCAAGTTCAAACAAGTCTGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1998433 148 - 2193130 TTAGGATATCAAATAAGGCTCATCTTATGTCTTGTGACACAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGATT-ACTCATGCTTCATGGATAATTGTTCCCAAATAATAAACTATTATGAATCATCAAGTTCAAACAAGTGTGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30069943 124 - 77216781 TAAGGATATCAAATAAGGCTTGTCTAATGTCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAG-------------------------TAATTGTTCCTAAATAATAAACTACTGTGAATCATCAAGTTCAAACAAGTCTGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27982236 124 - 80997621 TTAGGATATCAAATAAGGCTTGTCTAATGTCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAG-------------------------TAATTGTTCCTAAATAATAAACTACTGTGAATCATCAAGTTCAAACAAGTCTGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2039947 124 + 10377808 TTAGGATATCAAATAAGGCTTGTCTAATGTCTTGTGACAAAACGGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAG-------------------------TAATTGTTCCTAAATAATAAACTACTGTGAATCATCAAGTTCAAACAAGTCTGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1924873 148 - 8458610 TTAGGATATCAAATAAGACTTGTCTAACGTCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGTATGGGCAGTTCCGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTGTGAATCATCAAGTTCAGACAAGTCTGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64880398 148 + 75148670 TTAGGATATCAAATAAGGCTTGTCTAACGTCTTGTAACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTTTGAATCATCAAGTTCAAACAAGTCTGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2109907 148 + 4244037 TTAGGATATCAAATAAGGCTTGTCTAACGTCTTGTGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTCCAGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTGTGAATCATCAAGTTCAGACAAGTCTGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2132301 148 + 4569836 TTAGGATATCAAATAAGGCTTGTCTAACGTCTTGTGACAAAAGAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGATT-ACTCATGCTTCTTGGATAATTGTTCCTAAATAATAAACTATTGTGAATCATCAAGTTCAAACAAGTCTGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46104411 148 - 159171411 TTAGGATATCAAATAAGGCTCATCTTACGTCTTGCGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGACT-ATTCATGCTTCTTGGATAATTGCTCCTAGGTCACAAACTATTGTGAATCATCAAGTTCAAGCAAGTCTGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814584 148 + 3513951 TTAGGATATCAAATAAGGTTCATCTTACATCTTGCAACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGACT-ACTCATGCTTCTTGGATAATTTTTCCTAAGTCACAAACTATTGTGAATCATCAAGTTCAAACAAGTCTGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863482 148 + 1920343 TTAGGATATCAAATAAGGCTCATCTTACAACTTGCGACAAGACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGACT-ATTCATGCTTCTTGGATAATTGTTCCTAAGTCAGAAACTATTGTGAATCATCAAGTTCAAACAAGTCTGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978504 148 - 7032639 TTAGGATATCAAATAAGGCTCATCTTACGTCTTACGACAAAACAGAAGTGGTGTCATA---------------------------------------------------------------------------------------------TGCATGGGCAGTTCAGACT-ATTCATGCTTCTTGGATAATTGTTCCTAAGTCACAAACTATTGTGAATCATCAAGTTCAAACAAGTCTGGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22796054 141 + 28711273 TTAGGATACCCAATTGGGGTC-----AAAACAGAAGACAGAACAGAAGTGGTGTCACA---------------------------------------------------------------------------------------------TGCATGGGCAGTTC--ATT-ACCTATGCTTCCTGGATAATTGTTCCTATATCACAAACTACTGTGAATCATCAAGTTCAAACAAGCTCAGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22063666 138 - 122082543 TCAAAGCATCAAATCACACTCTTCCTA---------ACAAAGCTGAAGTGGTGTCTTA---------------------------------------------------------------------------------------------CACACGGGCAGTTTACGCT-GCT-GTGCCTCTTGGATGACTCTTCCTAAGTCACAAACTGTTATGAATCATCGAGTTCAAACAAGCGCAGC i mm10.chr11 I 194 C 0 s canFam3.chr9 21410045 241 + 61074082 TTAGGATATCAAATAAGTCTTATCTTATGCCTTGAAACAAAGTAGAAGTTGAGTTATATACATGGGCAttttttctttttgtacatttgtttttatttaaattcaatttgccaacatataggataacacccagtgctcaacccatcaagtgTGCATGGGCATTTCCAACT-GTGTATGTATGTTGGGTAGATGTTCCTAAATCACCAATTATTATGAATCATCAAATCAGAACAAGCTAGAC i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 388297 0 - 852752 C a score=4069782.000000 s hg38.chr17_GL383564v2_alt 87206 326 + 133151 AT-------CTGCGTAAAGCCCAC-------------TCCAATTATTGTATAAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTAATAATCAGATATATAAATTTATTGCAGCAGAACTTCTCTAAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCGAAGTTCACTGTGGGCATTACTTTAAGAATGTGCACAGGC--GCTGCGTACAGCAGGCATACCTGTGTGACCCTGGAAAGGTCCTGGTAAATTTCTGGTCAAGGCAGCCAATACCCTCTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----AACA-TCACC s panTro5.chr17 16273783 326 + 83181570 AT-------CTGCTTAAAGCCCAC-------------TCCAATTATTGTATAAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTAATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTAAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCGAAGTTCACTGTGGGCATTACTTTAAGAATGTGCACAGGC--GCTGCGTACAGCAGGCATACCTGTGTGACCCTGGAAAGGTCCTGGTAACTTTCCGGTGAAGGTAGCCAATACCCTCTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCCCTTCT-----AACA-TCACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16181235 326 + 83442489 AT-------CTGCTTAAAGCCCAC-------------TCCAATTATTGTATAAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTAATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTAAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCGAAGTTCACTGTGGGCATTACTTTAAGAATGTGCACAGGC--GCTGCGTACAGCAGGCATACCTGTGTGACCCTGGAAAGGTCCTGGTAACTTTCCGGTGAAGGTAGCCAATACCCTCTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCCCTTCT-----AACA-TCACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4016269 326 + 4267968 AT-------CTGCTTAAAGCCCAC-------------TCCAATTATTGTATAAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTAATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTAAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGGCATTACTTTAAGAATGTGCACAGGT--GCTGCGTACAGCAGGCATACCTGTGTGACCTTGGAAAGGTCCTGGTaactttctggtcaaggtagccaataccctctcaatggtcctgatcaagtgtggcccctttgctgcacttggcacttct-----aaca-tcacc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1998581 326 - 2193130 AT-------CTGCTTAAAGCCCAC-------------TCCAATTATTGTATAAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTAAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACTGAAGTTCACTGTGGGCATTACTTTAAGAATGTGCACAGGC--GCTGCGTACAGCAGACATACCTGTGTGACTCTGGAAAGGTCCTGGTAACTTTCTGGTCACGGTAGCCAATACCCTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----AACG-TCACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30070067 326 - 77216781 AT-------CTGCTTAAAGCACTC-------------TCCAATTATTATATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAGAATGTGCACAGGC--GCTGCATACAGCAGACACAACTGTGTGACCCTGGAAGGGTCCTGGTAACTTTCTGGTCAAGGTAGCCAATACCCTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-TCACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27982360 326 - 80997621 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTATATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAGAATGTGCACAGGC--GCTGCATACAGCAGACACAACTGTGTGACCCTGGAAGGGTCCTGGTAACTTTCTGGTCAAGGTAGCCAATACCCTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-TCACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2040071 326 + 10377808 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTATATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAGAATGTGCACAGGC--GCTGCATACAGCAGACACAACTGTGTGACCCTGGAAGGGTCCTGGTAACTTTCTGGTCAAGGTAGCCAATACCCTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-TCACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1925021 326 - 8458610 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAGAATGTGCACAGGC--ACTGCATACAGCAGACACAACTGTGTGACCCTGGAAGGGTACTGGTAACTTTCTGGTCAAGGTAGCCAATACCCTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-TCACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64880546 326 + 75148670 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATGAACATCTCAGTTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAGAATGTGCACAGGC--GCTTCATACAGCAGACAAAACTGTGTGACCCTGGAAGGGTCCTGGTAACTTTCCGGTCAAGGTAGTCAATACCGTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----GATG-TCACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2110055 326 + 4244037 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATGAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAGAATATGCACAGGC--ACTGCATACAGCAGACACAACTGTGTGACCCTGGAAGGGTCCTGGTAACTTTCTGGTCAAGGTAGCCAATACCCTTTCCATGGTCCTGATCATGTGCGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-TCACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2132449 326 + 4569836 AT-------CTGCTTAAAGCACAC-------------TTCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGATATATAAATGTATTGCAGCAGAACTTCTCTTAGTAATAAACATCTCAATTCTGTGTGTTTGAAGTCTTGGTTTACCAAAGTTCACTGTGGACATTACTTTAAAAATGTGCACAGGC--GCTGCATACAGCAGACACAACTGTGTGACCCTGGAAGGGTCTTGGTaactttctggtcaaggtagccaataccctttccatggtcctgatcatgtgtggcccctttgctgcacttggcacatct-----gacg-tcacc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46104559 325 - 159171411 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-TGAGCTTTATAATCAGGTATACAAATGGATTGCAGCAGAACTTCTGTAAGTAATGCACATCTCAACTCTGCGTGTTTGAAGTCTTGGTTTACCGAAGTGGGCATT---CATTACTTTAAGAATGCGCACAGGCATACAGCATACAGCAGACACACTCGTGTGACCCCCAAAGAGTCCTGGTAGCTTTCTGGTCAATGTAGCCAATACCCTCTCCATGGTCCTGATCACGCGTGGCCCCTTTGCTGCACTTGGCACTTCT-----GATG-CCACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1814732 324 + 3513951 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGGTGTACAAATGGATTGCAGCAGAACTTCTGTAAGTAATGCACATCTCAACTCTGTGTGTTTGAAGTCTTGGTTTACCGAAGTGGACATT---CATTACTTT-AGAATGTGCACAGGCATACAGCATACAGCAGATGCACTTGCGTGACCCCCGAAGAGTCCTGGTAGCTTGCTGGTCAATGCAGCCAATATCCTCTCCATGGTCCTGATCATGCGTGGCCCCTTTGCTGCACTTGGCACTTCT-----GATG-CCACC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863630 325 + 1920343 AT-------TTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAACCAGGTATACAAATGGATTGCAGCAGAACTTCTGTAAGTAATGCACATCTCAACTCTGTGTATTTGAAGTCTTGGTTTACCGAAGTGGGCATT---CATTACTTTAAGAATGTGCACAGGCATACAGCATACAGCAGACACACTTGTGTGACCCCCGAAGAGTCCTGGTAGCTTTCTGGTCAATGTAGCCAATACCCTCTCCATGGTCCTGATCACGCGTGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-CCACC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978652 325 - 7032639 AT-------CTGCTTAAAGCACAC-------------TCCAATTATTGTATGAAAGTCTGTATTGGTAAGATCAAAGC-TC-CAAGCTTTATAATCAGGTATACAAATGGATTGCAGCAGAACTTCTGTAAGTAATGCATATCTCAACTCTGTGTGTTTGAAGTCTTGGTTTACTGAAGTGGGCATT---CATTACTTTAAGAATGTGCACAGGCATACAGCATACAGCAGACACACTTGTGTGACCCCCGAAGAGTCCTGGTAGCTTTCTGGTCAATGTAGCCAATATCCTCTCCATGGTCCTGATCACGCGTGGCCCCTTTGCTGCACTTGGCACTTCT-----GACG-CTACC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22796195 307 + 28711273 ATCTCTGAACTGCTTGTAGTACAC-------------TCCAATTATTGTATGAAAGTCTGTCCTAGTAAGACCAAAGC-TCACAAGCTCTGTAATCAGGCGCACACATGCACTGTGCTATAACTTCTTCAGGTAATGAACAGCTCGGCTCCATATGTTTGAAGTCTCAGTTTATCTAAGTCCAACCTGG-TATTACTTTAAGAATGTGCA-------------TAAAGCAGGCATGCCTGTATCACCCTGGAAGGGTCCTGGCAACTTTCTGGCCACTGTCACCAGGACCCTCTCCATGGTCCTGATTGTATGTGG-CCCTTTGCTGTCCTTTG--------------------CC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22063804 338 - 122082543 ATCTCTGAACTGCTTCAAGTGCAATTATCTTTCAAGGTCCAATCATTGTGTAAAGCTCTG-ATCCCTGAGACTGAAGC-TCATATGCTTTGTAATCAAGTGTACAGGTGCAATATGGTGGAAGTTCTCTAAGGAATGGTCATCTTGCCTCTGCATGTTTGAAAACTCAGTTTATTAAAGTTTAGTGTGGGTATTACTTT----ATGGACACAGGT--TTTATACACAGCAGGTATACCTGTGTGACACTAGGAGGGTCCTGACAACTTTTTGGAC----CACTCAACACCCCCTCCATGGTCCTGATTGTGCATGATCTTGCGGATGTACTTAGAAgtcctcgaaagatg------ i mm10.chr11 C 0 I 352 s canFam3.chr9 21410286 329 + 61074082 ATCTTTAAACTACTTAAAGCACAC-------------TCTAATTATTGTA-GAAAGTCTGTATTTGTAAGACCAAAGA-TCACAAGCTTTATAATAAGGTGTACAAACTGATTATGGCAAGGCTTCTTTAAACAATGGA-ATCTCAACTCTGGGTGTTTAAAATCTTGATAGCTTAAAGTTCAATGTGAGGGTTACTTCAAGAA----CACAGGT--ACCGTATACAGTAAGCACATCTATATGACCCTGGAAAGGTCCTGGCAACTTGTTGGTCAATGTATCCAAGAACCTCTCCATGGTTCTGATCTTACAGGGCCCCTTTGCCGCACTTGACACTTTT-----GACCTTCACC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 388297 300 - 852752 AC-------CTGCTTAAATCCTAA-------------TCCAAATATTGTATGAAAGTCTGTATTGATAAGACCAAAGCTTC-CAAGCTTCATAAT-GGGCGTGCAAACTGATTGTGGCAGGACGTCTCTCGATAATCGATA-CTCAACTCTGCATGTTTAATATTGCAGTTTACCAAAGGCCAGTGTGGGCA--------AGAA----CACAGTC--ACTGTATACACTAGGCACACCTGTGTGGTCCC-AAAGGGTCCCAGCAACTTCCTGGTCAACACATCTAAGATGTTCTCCACAG-CCTGTTCTGATGCGGTCCCTCTGCCGCACCTGGCGGTT----------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=2973290.000000 s hg38.chr17_GL383564v2_alt 87532 255 + 133151 TCCTCTTGGAAGCACCCTCCTTCCTGCCCTTCTGGGATGCCATGAACTTGTTTTTATCA-TTTTTTT-CTC----ACCATTTCTCCATTTATCACAGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCTTGGCCCAGTTCTCTAACTCTCTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGt---------------ctt s panTro5.chr17 16274109 255 + 83181570 TCCTCTTGGAAGCACCCTCCTTCCTGCCCTTCTGGGATGCCATGAACTTGTTTTTATCG-TTTTTTT-CTC----ACCATTTCTCCATTTATCACAGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCTTGGCCCATTTCTCTAACTCTCTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAG------------ATTCT-AAT---------------CTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16181561 255 + 83442489 TCCTCTTGGAAGCACCCTCCTTCCTGCCCTTCTGGGATGCCATGAACTTGTTTTTATCG-TTTTTTT-CTC----ACCATTTCTCCATTTATCACAGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCTTGGCCCATTTCTCTAACTCTCTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAG------------ATTCT-AAT---------------CTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4016595 255 + 4267968 tcattttggaagcaccctccttcctgcccttctgggatgccatgaacttgttttatcat-ttttttt-ctc----accatttctccatttatcacagattctttttccttctcctgatctctgattgg-gaaattctccaaagtttgatccttagctccttgttgctcttctttt-----tgtactctc--ccttggCCCAGTTCTCTAACTCTCTCACTTGTACT-------AAACCTTAGCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1998907 256 - 2193130 TCCTGTTGGAAGCACCCTCCTTCCTGCCCTTCTGGGATGCCATGAACTTGTTCTTATAATTTTTTTT-CTC----ATCATTTCTCCATTTATCACAGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----CGTGCTCTC--CCTTGGCCCAGTTCTCTAACTCTCTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30070393 256 - 77216781 TCCTCTTGGAAGCACCCTCCTTCCTGTCCTTCTGGGATGCCACGAACTTGTTCTTATCATTTTTTTT-CTC----ACCATTTCTCCATTTATCACGGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCTTGGCCCAGTGCTCTAACTCTTTCACTTGTACT-------AAACCTTATCTGT-A--TCATCACCCCTGCCATAA------------ATTCT-AGT---------------CTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27982686 256 - 80997621 TCCTCTTGGAAGCACCCTCCTTCCTGTCCTTCTGGGATGCCACGAACTTGTTCTTATCATTTTTTTT-CTC----ACCATTTCTCCATTTATCACGGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCTTGGCCCAGTGCTCTAACTCTTTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGt---------------ctt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2040397 256 + 10377808 TCCTCTTGGAAGCACCCTCCTTCCTGTCCTTCTGGGATGCCACGAACTTGTTCTTATCATTTTTTTT-CTC----ACCATTTCTCCATTTATCACGGATTCTTTTTCCTTCTCCTGATCTCTCATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCTTGGCCCAGTGCTCTAACTCTTTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGt---------------ctt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1925347 257 - 8458610 TCCTCTTGGAAGCACCCTCCTTCCTGTCCTTCTGGGATGCCATGAACTTGTTCTTATCATTTTTTTTCCTC----ACCATTTCTCCATTTATCACGGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTCCTTTT-----TGTACTCTC--CCTTGGCCCAGTGCTCTAACTCTTTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64880872 256 + 75148670 TCCTATTGGAAGCACCCTCCTTCCTGCGCTTCTGGGATGCCACGAACTTGTTCTTATCATTTTTTTT-CTC----ACCATTTCTCCATTTATCACGGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTT--CCTTGGCCCAGTGCTGTAACTCTTTCACTTGTACT-------AAACCTTATCTAT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2110381 256 + 4244037 TCCTCTTGGAAGCACCCTCCTTCCTGTCCTTCTGGGATGCCATGAACTTGTTCTTATCATTTTTTTT-CTC----ACCATTTCTCCATTTATCACGGATTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTT-----TGTACTCTC--CCATGGCCCAGTGCTCTAACTCTCTCACTTGTACT-------AAACCTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2132775 257 + 4569836 tcctcttggaagcaccctccttcctgccctcctgggatgccacgaacttgttcttatcctttttttttctc----accatttctccatttatcacagattctttttccttctcctgatctctgattgg-gaaattctccaaagtttggtcctcagctccttgttgctctactctt-----tgtactctc--tcttggcccagtgctctaactctgtcacttgtact-------aaaccttatctgt-a--tCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46104884 254 - 159171411 TCCTCTTGCAAGCACCCTCCTTCCTGCCCTTCTGGGAT-----GAACTCATTTTC-TCA-TTTTTTT-TTTTTTAACCATTTCTCCATTTATCACAGAGTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAA-TCTCCAGAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTTG---CTCTCTTCTC--CCTTAGCCCAGTTCTCTAACTCTCTCACTTGTACT-------AAGATTTATCTGT-C--TCATCATCCCTGCCATAA------------ATTCT-AGt---------------ctt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1815056 254 + 3513951 TCCTCTTGGAAGCACCCTCCTTCCTGCCCTTCTGGGAT-----GAACTCATTTTC-TCA-TTTTTTT-CTT----ACCATTTCTCCATTTATCACAGAGTCTTTTTCCTTCTCCTGATCTCTGATTGG-GAAATTCTCCAAAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTTGTTTCTCTCTTCTC--CCTTAGCCCAGTTCTCTAACTCTGTCACTTGCACG-------AAGATTTATCTGT-A--TTGTCATCCCTGACATAA------------ATTGT-AGt---------------ctt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1863955 254 + 1920343 TCCTCTTGGAAGCACCCTCCTTCCTGCCCTTCTGGGGT-----GAACTCATTTTC-TCA-TTTCTTT-CTT----ACCATTTCTCCATTTATCACGGAGTCTTTTTCCTTCTCCTGATATCTGATTGG-GAAATACTCCAGAGTTTAGTCCTCAGCTCCTTGGTGCTCTTCTCTTGTTGCTCTCTTCTC--CCTTAGCCCAGTTCTCTAACTCTCTCACTTGTACG-------AAGATTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6978977 254 - 7032639 TCCTCTTAGAAGCACCCTCCTTCCTGCCCTTCTGGGAT-----GAACTCATTTTC-TCA-TTTTTTT-CTT----ACCATTTCTCCGTTTACCACGGAGTCTTTTTCCTTCTCCTGGTCTCTGATTGG-GAAATTCTCCAGAGTTTGGTCCTCAGCTCCTTGTTGCTCTTCTCTTGTTGCTCTCTTCTC--CCTTAGCCCAGTTCTCTAACTCTCTCACTTGTACT-------AAGATTTATCTGT-A--TCATCATCCCTGCCATAA------------ATTCT-AGT---------------CTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22796502 258 + 28711273 TTGTCTTGGAAGTGTTTTCCTTTC-ACCCTTCTGTGATGCCCCAGACTGGTTCTCTTCA-TCTTTTT-CTC----TCTGTTTCTCCATTTATACCTGTTTCTTCTTCCTTCTCCTGGTCTCCATTTTG-GAAGTCCTCTTGAGTCTGGT-CTCAGCCCATAGTTGCTCTTCTCTT-----TGAGCGCTCATCCTCGGCTTGTTTCTCTAACTCTTGCACTTCTCCT------GAAACCTCATCTGC-CATTTATCATCCCTGCCATAA------------ATTCT-AGt---------------ctt i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22064494 252 - 122082543 TCCTCTTTCATAAGCTCTCCTCCCTGCTCATTGGTGATGACATAAACTCACTCCCTTCA--TTGTTT-CTC----CCTTTGTCTCCACTTCTC--------------------------------TGG-AA---TTTCCAAAGTCTGGCCCTCAGCTC-TTGCTTCTCT-CTCTC-----TCTTCTTTC--CCTCTGCCCATCTCTGTACTTCTCACACCTGCACCCTAGTCATACCCATATCTGTCA--TTAACGTTCCTATCATAACTCTATCCTTTGATTCC-CTTTGCCCCCTTTTGCTGctt i mm10.chr11 I 352 C 0 s canFam3.chr9 21410615 244 + 61074082 TCCCCTCTGAAA---CTTCCTTCTTGGCCTCT---GATGCCATGAGCTGTCTCTCTTCA-TTCTTCT-CTC----ACTGTTTCTCCACTTCTCTCTGA-CCCTTTTCCTTCT-CTACTCTCTGGTTGGAGAAATTCCCCAAAGTTTGGTCCTTAGGTCCTTGTTGCTCTTCTCCA-----TGTACATTC--TCATG-------TTTCTAACTCTCACATCTGCACT------TGGATCATACCTGTCC--TTAACATTACTGTCAAGA------------TTACTAAGG---------------CTT i canFam3.chr9 C 0 I 1113 s dasNov3.JH570468 388597 234 - 852752 ---------AAGCGCTCTCCTCCCTGGCCTGCTGTGGTGCCATGAgctccttctcttc--cttttct-ctt----accatttctct--------ctgactcattttactt---ctgatcactaattga-ggaattccccagagttcagtcctgagcccttttgtgctgttcttctg----tattctctc--ccttggcttgcttctctaattctcacatctgtgct------aaaaacttatct---g--ccatttcccccatcataa------------attct-agt---------------ctt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=8119.000000 s hg38.chr17_GL383564v2_alt 87787 3 + 133151 gca s panTro5.chr17 16274364 3 + 83181570 GCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16181816 3 + 83442489 GCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4016850 3 + 4267968 GCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1999163 3 - 2193130 GCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30070649 3 - 77216781 ACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27982942 3 - 80997621 aca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2040653 3 + 10377808 aca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1925604 3 - 8458610 ATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64881128 3 + 75148670 ACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2110637 3 + 4244037 ATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2133032 3 + 4569836 ACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46105138 3 - 159171411 tcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1815310 3 + 3513951 tcc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1864209 3 + 1920343 TCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6979231 3 - 7032639 TCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22796760 3 + 28711273 tcc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22064746 3 - 122082543 gcc i mm10.chr11 C 0 C 0 s canFam3.chr9 21411972 3 + 61074082 GCC i canFam3.chr9 I 1113 C 0 s dasNov3.JH570468 388831 3 - 852752 gca i dasNov3.JH570468 C 0 I 981 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=11241789.000000 s hg38.chr17_GL383564v2_alt 87790 998 + 133151 tggactgttgcaatagtctctttgctgaactctttgcctccaatctttccttcATTTTTCA-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACACCTTTTGTCACACCACACTTAGGTTCAAAAGCTTATACTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATCGAGACCCCCTACCATAGGGTCCCCATACAATCCCCCATAAAGC---TTTAATTTCTAGCACTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGACTTACCCTGGTCCTTC-AACCATGCCTTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCTATCCCAGCACAAATCCATTCA----TCCATTCCTAAGAGCCTCCAATCCTGGAGCTGCTCGCCCTCCCC--AGTGTGTAAACCACTCAGTTATCACTTGTCAACTTCTGCCTCAGATTATTATTTCCTGTTCATCCCttcatca-ctct-acccacacccattcaa------cag----tgcc-------taccaggtgcctagagctggggattcaaagacaaactagaccctgcccttgccttcagggacctcaaa-------t--agagacagagagacaagcacataagtcatgacagt-gtcatgctcaaggt-----aaaaagagagcttggagaggagaaagggacggcctgtctgaaga----ag----ggaaggAA-----------------------------------GTAAGCCATTTATATTTAAGCCAAGTGTTGTGATGAAAAGAAA--------AGTGATCTgctttggaatcctagg-tccacaacttattat-cctcaccctctatgccttggtgttctcatctataaaatgggaattatacagtttacctttaagagttctggtgaggaataaTGGACATCTAAGTTCTGCATGTTTGAGGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGTTTCTTAACAAGTAAG s panTro5.chr17 16274367 998 + 83181570 TGGACTGTTGTAATAGCCTCTTTGCTGAACTATTTGCCTCCAATCTTTCCTTCATTTTTCA-AAAACAG--------------------------------------------AAAAATATTTGCTAAAACATTTCCTAAAACACCTTTTGTCACACCACACTTAGGTTCAAAATCTTATACTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATCGAGACCCCCTACCATAGGGTCCCCATACAATCCCCCATAAAGC---TTTAATTTCTAGCACTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGACTTACCCTGGTCCTTC-AACCATGCCTTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCATAAATCCATTCA----TCCATTCCTAAGAGCCTCCAATCCTGGAGCTGCTCACCCTCCCC--AGTGTGGAAACCACTCAGTTATCACTTGTCAACTTCTGCCTCAGATTATTATTTCCTGTTCATCCCTTCATTA-CTCT-ACCCACACCCATTCAA------Cag----tgcc-------taccaggtgcctagagctggggattcaaagacaaactagaccctgcccttgccttcagggacctcaaa-------t--agagacagagagacaagcacataagtcatgacagt-GTCATGCTCAAGGT-----AAAAAGAGAGCTTGGAGAGGAGAAAGGGACGACTTGTCTGAAAA----AG----GGAAGGAA-----------------------------------GTAAGCCATTGATATTTAAGCCACGTGTTGTGATGAAAAGAAA--------AGTgatctgctttggaatcctagc-tccacaacttattat-cctcaccctctatgccttggtgttctcatctataaaatgggaattatacagtttacctttaagagttctggtgaggaataaTGGACATCTAAGTTCTGCATGTTTGAGGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16181819 998 + 83442489 TGGACTGTTGTAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCA-AAAACAG--------------------------------------------AAAAATATTTGCTAAAACATTTCCTAAAACACCTTTTGTCACACCACACTTAGGTTCAAAATCTTATACTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATCGAGACCCCCTACCATAGGGTCCCCATACAATCCCCCATAAAGC---TTTAATTTCTAGCACTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGACTTACCCTGGTCCTTC-AACCATGCCTTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCATAAATCCATTCA----TCCATTCCTAAGAGCCTCCAATCCTGGAGCTGCTCACCCTCCCC--AGTGTGGAAACCACTCAGTTATCACTTGTCAACTTCTGCCTCAGATTATTATTTCCTGTTCATCCCttcatta-ctct-acccacacccattcaa------cag----tgcc-------taccaggtgcctagagctggggattcaaagacaaactagaccctgcccttgccttcagggacctcaaa-------t--agagacagagagacaagcacataagtcatgacagt-gtcatgctcaaggt-----aaaaagagagcttggagaggagaaagggacgacttgtctgaaaa----ag----ggaaggaa-----------------------------------gtaagccattgatatttaagcCACGTGTTGTGATGAAAAGAAA--------AGTgatctgctttggaatcctagc-tccacaacttattat-cctcaccctctatgccttggtgttctcatctataaaatgggaattatacagtttacctttaagagttctggtgaggaataaTGGACATCTAAGTTCTGCATGTTTGAGGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4016853 997 + 4267968 TGGACTGTTGCAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCA-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGCCTTTTGTCACACCACACTTA-GTTCAAAAGCTTATACTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATCGAGACCCCCTACCATAGGGTCCCCTTACAATCCCCCATAAagc---tttaatttctggcacttc-ccttcacaactctccccttcctgctgcctagacttaccctggtccttc-aaccatgccttgggctttcccaccccattcctgtgtgcacattattct----cctcacctgcacttcctactttt---ctcccctctgcttcttaga-agc------ctccccatcccagcacaaatccattca----tccattcctaagagcctccagtcctggagctgctcgccctcccc--AGTGTGTAAACCACTCAGTTATCACTTGTCAACTTCTGCCTCAGATTATTATTTCCTGTTCATCCCttcatca-ctct-acccacacccattcaa------cag----tgcc-------taccaggtgcctagagctggggattcaaagacaaactagaccctgcccttgccttcagggacctcaaa-------t--agagacagagagacaagcacataagtcatgacagt-gtcatgctcaaggt-----aaaaagagagcttggagaggagaaagggacgacttgtctgaaga----ag----ggaaggAA-----------------------------------GTAAGCCATTTATATTTAAGCCACGTGTTGTGATGAAAAGAAA--------AGTgatctgctttggaatcctagc-tccacaacttattat-ccttaccctctatgccttggtgttctcatctataaaatgggaattatacagtttacctttaagagttctggtgaggaataaTGGACATCTAAGTTCTGCATGTTTGAGGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 1999166 984 - 2193130 TGGACTGTTACAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCA-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCTTAAAATGCCTTTTGTCACACCACACTTAGGTTCAAAAGCTTATACTGGCTCTACAGCTTCTGGGGAAGTCCAAGATGCTCCACTTCACCATTGAGA-CCCCTACCATAGGGTCCCCATAATATCCCCCATAAAGC---TTTAATTTCTAGCACTTC-CCTTCGCAACTCTCCCCTTCCTGCTGCCTAGACTTACCCTGATCCTTC-AAACATGACTTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTGACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCACAA--------A----TCTATTCCTGAGAGCCTCCAATCCTGGAGCTGCTCGCCCTCCCC--AGTGTGTAAACCACTCAGTTATCACTTGT--ACTTCTGCCTCAGATTATTATTTCCTGttcatcccttcatcc-ctct-acccacacccattcaa------cag----tgcc-------taccaggtgcctagagctggggattcaaagacaaactagaccctgcccttgccttcagggaactcaaa-------t--agagacagagagacaagcacataagtcatgacagt-gtcatgctcaaggt-----aaaaagagagcttggagaggagaaagggacgacctgtctgaaga----ag----ggaaggAA-----------------------------------GTAAGCCATTTATATTTAAGCCACGTGTTGTGATGAAAAGAAA--------AGTgatctgctttggaatcctagc-tccataacttattatccctcaccctctatgcc----tgttctcatctataaaatgggaattatacagattaccttgaagagttctggtgaggaataaTGGACATCGAAGTTCTGCATGTTTGAGGATCAGGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGGCCA-CACTACCTTGGGCCTGTGCAGGTTCTTAACAAGTAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30070652 987 - 77216781 TGGACTGTTACAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGACTTTTATCACACCACACTTACGTTCAAAAGCTTATATTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATTGAGA-CCCCTACCACAGGGTCCCCATACAATCCCCCATAAAGT---TTTAAtatctaccacttc-ccttcacaactctccccttcctgctgcctaggcttaccctggtccttc-aaccacgccctgggctttcccaccccattcctgtgtgcacattattct----cctcacctgcacttcctactttt---ctcccctctgcttcttaga-agc------ctccccatcccagcacaa--------a----tccATTCTTGAGAGCCTCCAATCCTGGAGGCGCTCGCCCTCCCC--AGTGTGTAAACTACTCACTTGCCACTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCTttcatcc-ctct-acacacacccattcaa------cag----tgcc-------taccaggtgcctagagctgggaattcaaagacaaactagaccctgcccttgccttcagggaactcaaa-------t--agag--agagagacaagcacataaGTCATGACAGT-GTCATGGTCAAGGT-----AAAAAGAGAGCTTGGAGAGGAGAAAGGGGCGACCTGTCTGAAGA----AG----GGAAGGAA-----------------------------------GTAAGCCGTTTATACTTAAGCCGCATA-TGTGATGAAAAGAAA--------AGagatctgctttggaatcctagc-tccacaacttattatcccttaccctctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagagttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27982945 987 - 80997621 tggactgttacaatagcctctttgctgaactctttgcctccaatctttccttcATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGACTTTTATCACACCACACTTACGTTCAAAAGCTTGTATTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATTGAGA-CCCCTACCACAGGGTCCCCATACAATCCCCCATAAAGT---TTTAATATCTACCACTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGGCTTACCCTGGTCCTTC-AACCACGCCCTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCTTGAGAGCCTCCAATCCTGGAGGCGCTCGCCCTCCCC--AGTGTGTAAACTACTCACTTGCCACTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCTttcatcc-ctct-acacacacccattcaa------cag----tgcc-------taccaggtgcctagagctgggaattcaaagacaaactagaccctgcccttgccttcagggaactcaaa-------t--agag--agagagacaagcacataaGTCATGACAGT-GTCATGGTCAAGGT-----AAAAAGAGAGCTTGGAGAGGAGAAAGGGGCGACCTGTCTGAAGA----AG----GGAAGGAA-----------------------------------GTAAGCCGTTTATACTTAAGCCGCATA-TGTGATGAAAAGAAA--------AGagatctgctttggaatcctagc-tccacaacttattatcccttaccctctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagagttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2040656 987 + 10377808 tggactgttacaatagcctctttgctgaactctttgcctccaatctttccttcATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGACTTTTATCACACCACACTTATGTTCAAAAGCTTATATTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATTGAGA-CCCCTACCACAGGGTCCCCATACAATCCCCCATAAAGT---TTTAATATCTACCACTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGGCTTACCCTGGTCCTTC-AACCACGCCCTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCTTGAGAGCCTCCAATCCTGGAGGCGCTCGCCCTCCCC--AGTGTGTAAACTACTCACTTGCCACTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCTttcatcc-ctct-acacacacccattcaa------cag----tgcc-------taccaggtgcctagagctgggaattcaaagacaaactagaccctgtccttgccttcagggaactcaaa-------t--agag--agagagacaagcacataaGTCATGACAGT-GTCATGGTCAAGGT-----AAAAAGAGAGCTTGGAGAGGAGAAAGGGGCGACCTGTCTGAAGA----AG----GGAAGGAA-----------------------------------GTAAGCCGTTTATACTTAAGCCGCATA-TGTGATGAAAAGAAA--------AGagatctgctttggaatcctagc-tccacaacttattatcccttaccctctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagagttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1925607 988 - 8458610 TGGACTGTTACAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGACTTTTATCACACCACACTTAGGTTCAAAAGCTTATTTTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCACTGAGA-CCCCTACCACAGGGTCCCCATACAATCCCCCATAAAGT---TTTAATGTCTACCATTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGGCTTACCCTGGTCCTTC-AACCATGCCCTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGG-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCTTGAGAGCCTCCAATCCTGGAGGCGCTCGCCCTCCCC--AGTGTGTAAACTACTCACTTGCCACTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCCttcatcc-ctct-acacacacccattcaa------cag----tgcc-------taccaggtgcctagagctgggaattcaaagacaaactagaccctgcccttgccttcagggaactcaaa-------t--agag--agagagacaagcacataagtcatgacagt-gtcatggtcaaggt-----aaaaagagagcttggagaggagaaaggggcgacctgtctgaaga----ag----ggaaggAA-----------------------------------GGAAGCCGTTTATACTTAAGCCGCATATTGTGATGAAGAGAAA--------AGagatctgctttggaatcctagc-tccacaacgtattatcccttaccctctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagagttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64881131 986 + 75148670 TGGACTGTTACAATAGCCTCTTTGCTGAACTCTTTGCCCCCAATCTTTCCTTCATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGACTTTTGTCACACCACACTTAGGTTCAAAAGCTTATATTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCTACTTCACCATTGAGA-CCCCTACCACAGGGTCTCCATACAATCCCCCATAAAGT---TTTAATTTCTACCACTTC-CCTTCACAACTCTCCCCTTCCTGCTTCCTAGGCTTACCCTGGTCCTTC-AACTATGCCCTGGGCTTTCCTACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCTTGAGAGCCTCCAATCCTGGAGGCGCTCGCCCTCCCC--AGTGTGTAAACTACTCACTTGCCACTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCCTTCATCC-CTCT-ATACACACCCATTCAA------Cag----tgcc-------taccaggtgcctacagctgggaattcaaagacaaactagaccctgcccttgtcttcagggaactcaaa-------t--agag--agagagacaagcacataaGTCATGACAGT-GTCATGGTCAAGGT-----AAAAAGAGAGCTTGGAGAGGAG-AAGGGGCGACCTGTCTGAAGA----AG----GGAAGGAA-----------------------------------GTAAGCCATTTATACTTAAGCCGCATATTGTGATGAAAAGAAA--------AGAGATCTGCTTTGGAA-CCTAGC-TCCACAACTTATTAtcccttaccctctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagagttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CAATACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2110640 988 + 4244037 TGGACTGTTACAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAACGACTTTTATCACACCACACTTAGGTTCAAAAGCTTATATTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTCACCATTGAGA-CCCCTACCACAGGGTCCCCATACAATCCCCCATAAAGT---TTTAATGTCTACCATTTC-CCTTCACAACTCTCCCCTTCCTGCTGCCTAGGCTTACCCTGGTCCTTC-AACCATGCCCTGGGCTTTCCCACCCCATTCCTGTGTGCACATTATTCT----CCTCACCTGCACTTCCTACTTTT---CTCCCCTCTGCTTCTTAGG-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCTTGAGAGCCTCCAATCCTGGAGGCGCTCACCCTCCCC--AGTGTGTAAACTACTCACTTGCCACTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCCTTCATCC-CTCT-ACACACACCCAGTCAA------Cag----tgcc-------taccaggtgcctagagctgggaattcaaagacaaactagaccctgcccttgccttcagggaactcaaa-------t--agag--agagagacaagcacataaGTCATGACAGT-GTCATGGCCAAGGT-----AAAAAGAGAGCTTGGAGAGGAGAAAGGGGCGACCTGTCTGAAGA----AG----GGAAGGAA-----------------------------------GTAAGCCGTTTATACTTAAGCCGCATATTGTGATGAAGAGAAA--------AGagatctgctttggaatcctagc-tccacaacttattatcccttaccctctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagcgttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTCTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2133035 990 + 4569836 CGGACTGTTACAATAGCCTCTTTGCTGAACTCTTTGCCTCCAATCTTTCCTTCATTTTTCT-AAAACAG--------------------------------------------ATAAATATTTGCTAAAACATTTCCTAAAATGACTTTTGTCACACCACACTTAGGTTCAAAAGCTTATATTGGCTCTACAGCTTCTGGGGAAGTCCAAGCTGCTCCACTTTACCATTGAGA-CCCCTACCACAGGGTCCCCATAcaatctcccataaagt---tttaatttctaccacttc-ccttcacaactcttcccttcctgctgcctaggcttatcctggtccttc-aaccatgccctgggctttcccaccccattcctgtatgcacattattct----cctcacctgcacttcctagtttt---ctcccctctgcttcttaga-agc------ctccccatcccagcacaa--------a----tccATTCTTGAGAGCTTCCAATTCTGGAGGCGCTTGCCTTCCCC--AGTGTGTAAACTACTCACTTGCCGCTTGTCAACTCCTTCCTCAGATTATTATTTCCTGTTCATCCCttcatcc-ctct-gcacacacccattcaa------cag----tgcc-------taccaggtgcctagagctgggaattcaaagacaaactagaccctgcccttgccttcagggaactcaaa-------tagagag--agagagacaaacacgtaagtcatgacagt-gtcatggtcaaggt-----aaaaagagaacttggagaggagaaaggggcgacctgtctgaaga----ag----ggaaggAA-----------------------------------GTAAGCCGTTTATACTTAAGCTGCATATTGTGATGAAAAGAAA--------AGagatctgctttggaatcctagc-tccacaacttattatcccttaccatctatgccttggtgtgctcatctataaaatgggaattatacaatttatcttgaagagttgtggtgaggagtaaTGGACATCTCAGTTCTGCATGTTTGAAGATCATGTTTGTAAAAAGGATCTAGTTTGTGAAAAGTGTCCA-CACTACCTTGGGCTTGTGCAGGTTATTAACAAGTAAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46105141 914 - 159171411 tggactgttgcaatagcctctttgctgaactctttgcctccaaactttccttcatatttct-aaaacag--------------------------------------------ATAAACATTTGCTAAAACGTTTCCCAAAATGCCTCTTGTTACATCA-ACTTGGA-------------------------------------------------------------TGAGT-TCCCT-CCCTAGGGTCCTCAATCAATCCCCCATAAAGC---TTTAATTTCTACCATTTC-CCTTCATAACCCTCCTCTTCCTGCTGCCTAGACTTA-------CCTTC-AACCATGCCTTGGGCTTTCCCACCCCATTCCCATGTGCACATTATTCT----CCTCACCTGCAGTTCCTAC-TTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCCTGAGAGCCTCCAATCCCAGAAGTGCTTGCCCTTCCC--AGTGTGTGAACCACCCACTTGTCACTTGTCAGCTTCTGCCTCAGATTACTATTTCCCATTCATCCCttcatcc-ctct-acacacacccattcaa------gag----tgcc-------tactgggtgcctagagctggggattcaaagacaaactagatcctgcccttgccttcagggaactcaaa-------t--atatatagagagacaagcgagtaagtcatgacaat-gtcatgatcaaggt-----aagaacagaggttggagaggagctaaaggtggccggtctgacGA----AG----GGAAGGGA-----------------------------------GTAAGCCGT-----CACAA-CCACATGTTGTGATGAGAAGAag--------agagatctgcattagaatcctggc-ttcacaacttattatcccctgccctctatgccttggtttgcacatctataaaatgggaaatttacagtttagcctgaagggttgtggtgcagaGTCATGAACATCTCGATTGTGTGTGTTTGAAGATCATGTCTGTAGAAAGGGTCTAGTTTGTGAAAAGTGTCCAGCACTGCCTTGGGCTTGTGCATGTTCTTAACAAGTAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1815313 985 + 3513951 tggactgttgcaatagcctctttgctgaactctttgcctccaaactttccttcATTTTTCT-AAAACAG--------------------------------------------GTAAACACTTGCTAAAACATTTTCTAAAATGCCTTTTGTCACATCACACTCAGGTTCAGAAGCTTAAACTGGCTCTACAGCTCCCAGGGAAGTCCAAGCTGCTGCACTTCACCATTGAGT-CCCCTACCCTAGGGTCCCCATACAATCCCCCATAAAGC---TTTAATTTCCATCACTTC-CCTTCATAACCCTCCTCTTCCTGCTGCCTAGACTTACCCTGGTCCTTC-AACCATGCCTTGGACTTTCCCACCCCATCCCCATGTGCACATTATTCT----CCTCACCTGCAGTTCTTACTTTT---CTCCCCTCTGCTTCTTAGA-AGC------CTCCCCATCCCAGCACAA--------A----TCCATTCCTGAGAGCCTCCAATCCCAGAGGTGCTCGCCCTTCCC--AGCGTGTGAACCACCCACTTGTCACTTGTCAACTCCTGCCTCAGATTACTATTTCCCATTCATCCCTTCATCC-CTCT-ATACACACCCATTCAA------Cag----tgcc-------tactgggtgcctagagctggggattcaaagacaaactagatgctgccctttccttcagggaactcaaa-------t--atatatagagagacaagcatgtaagtcatgacaat-gtcatgatccaggt-----aagaacagaggtttgagaggagct--agacgaCCGGTCTGAAGA----AG----GAAAGGAC-----------------------------------GTAAGCCATTTATATTTAA-CCACATGTTGTGATGAAAAGAAG--------AGATatctgcgttagaatcctggc-ttcacaactttttataccctaccctctatgccttggtttgcacatctataaaacgagaaatatacagcttatcctgaagagttgtggtgaggaGTTATGGACATCTTAATTGTGTGTGTTT---GATCATGTCTGTAGAAAGGGTCTAGTTTATGAAAAATGTCCTGCACTGCCTTGGGCTTGTGCAGGTTCCTAACAAGTAAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1864212 989 + 1920343 TAGACTGTTGCACTAGTCTCTTTGCTGAACTCTTTGCCTCCAAACTTTCCTTCATTGTTCTAAAAACAG--------------------------------------------ATAAACATTTGCTAAAACGTTTCCTAAAATGCCTTTTGTCACACCACACTCAGGTTCAGAAGCTTAAACTGGCTCTACAGCTCCCAGGGAAGTCCAAGCTGCTGCACTTCACCATTGAGT-CCCCTACCCTAGGGTCCCCATAcaatcccctataaagc---tttaatttccaccacttc-ccttcataaccctcctcttcctgctgcctagacttactctcattcttc-aaacatgccttgggctttcccgccccattcccatgtgcacattattct----ccttacctgcagttcctactttt---ctcccctctgcttcttaga-aga------ctcctcatcacagcacaa--------a----tccATTCCTGAGAGCCTCCAATCCCAGAGGTGCTTGTCCTTCCC--AGTGTGTGAACCACCTACTTGTCACTTGTCAACTCTTGCCTCAGATTACTATTTCCCATTCATCCCttcatcc-ctct-acacacacccattcaa------cag----tgcg-------tactcagtgcctagagctggggattcaaagacaaattagatcctgcccttgccttcagggaactcaaa-------t--atatacagagagacaagcacgtaagtcatgacaat-gtcatgatcaaggt-----aagaacagaggttggagaggagctaaagatgaccggtctgaaga----ag----ggaaggAA-----------------------------------GTAAGCCGTTTATATTTAA-CCACATGTTGCGATGAAAAGGag--------agagatctgtgttagaatcctggc-ttcacaacttattatcccctaccctctatgccttggtttgcacatctataaaatgggaaacatacagtttagcctgaagagttgtggtgaggaGTCATGGACATCTTAATTGTGTGTGTTTGAAGATCATGTCTGTAGAAAGGGTCTAGCTTGT--AAAGTGTCCAGCACTGCCTTGGGCTTGTGCAGGTTCTTAACAAGTAAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6979234 954 - 7032639 TGGACTGTCGGAATAGCCTCTTTGCTGAACTCTTTGCCTCCAAACTTTCCTTCAT-TTTCT-AAAACAG--------------------------------------------ATAAACATTTGCTAAAACGTTTCCTAAAATGCCTTTTGTCACACCACACTCAGGTTCAGAAGGTTAAACTGGCTCTACAGCTCCCAGGGAAGTCCAAGCTGCTGCACTTCACCATTGAGT-CCCCTAACCTAGGGTCCCCATACAATCCCCCATAAagc---tttaatttccaccacttc-ccttcataaccctcctcttcctgctgcctagacttaccctggtccttc-aaccatgccttgggctttcccaccccattcccatgtgcacattattct----cttcacctgcagttcctactttt---ctcccctctgcttcttaga-agc------cttcccatcccagcacaa--------a----tccATTCCTGAG-----------------GTGCTTGCCCTTCCC--AATGTATGAACCACCCACTTGTCACTTGTCAACTCCTGCCTCAGATTACTATTTCCCATTCATCCCttcatcc-ctct-acacacacccattcaa------cag----tgcc-------tactgggtgcctagagctggggattcaaagacaaactagatcctgcccttgccttcagggaactcaaa-------t--atatagagagagacaagcacgtaagtcatgacaat-gtcatgatcaaggt-----aagaacagaggttggagaggagctaaagacgaccggtctgaaga----ag----ggaaggAA-----------------------------------GTAAGCCATTTATATTTAA-ACACATGTTGTGATGAAAAGAag--------agagatctgtgttagaatcctggc-ttcacaacttattatcccccaccctctatgccttggtttgcacatctataaaatgggaaatatacagtgtagcctgaagagttgtggtgaggaGTCATGGACATCTCAATTGTGTGTGTTTGAAGATCATGTTTGTAGAAAGGGTCTAGTTTGTGAAAAGTGTCCAGCACTGC--TGGAC----------------AAAATAAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22796763 928 + 28711273 tggattcgtgtaataacctccttgctggtctttctgcctcaaacctttccttcATTTTTCC-AAAACAG--------------------------------------------ATAAATGTTTGCT-AAACATGTCTTAAAATAGTTTTTGTTGCTCCATATGCAGGCTCAAAAGTTTACACTTCCC------TTTTGGGGGAAGCCCAAGCT------CTCAGGCACTAAGA-TCTCTGC--TGAGGACC----AGGACTGTTTGCACAGC---TTTATTTTCTACCACTTCACCTTTATAACACTCTCTTCCCAGCTGCCTACACTTACCCAGA-CCCCC-AGCCACAACTTGGGCTTTCCTGTCCTGTTCCTGTGTGCACAACACCCTTCACTCCCACCTGTGCTTCCTGCCTTC---CCTCTCTCTGCTTCCTGGA-TGC------CTTCCCACCATAGCATAA--------A----TCCATTC-TGTGAATCTCCAGTCCTGGAGACACTC-CCTTCCCC--TGAGCGTAAGCTACCAACTCGCCACTTGTTACTTCCTGCCTCAAAATATTATGTCCTGGTCATCCCATCACca-ctca-acacataaccattcaa------cac----tgcctgctgtgtgccaggtgcccagatctggagcttcagagtcaaattagaccctgatattggcttcagagaactcaaa-------t--agag--atggaggtaagcaCCAAAGTCATGACCAT-GCCACACTCAAGGT-----AAAATAAGAGCTCAGAGAGAAGGAAGGGTTACCTCCCCTGAAAAAGTTAG----GAAAGGAG-----------------------------------GTAGGCCATTTATATTTAAGCAGCATATTATGGTGGAAAGAAT--------GGAGATCCAAGTTGGAGTTTTGACGGATAAAGCCTATTATCCCCTAccctctatgcctcag--------tctatagaatgggaattatatcattgaccttgaagggttgtggtgaaaagtaa-----at------------------aagatcatgtctgtcacaagtgtctgg------------------cat-------gacccgtacaggttcttgacaagtaca i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22064749 961 - 122082543 tagactgctataataacctccttgatggtctgtctgcgtccagccttttcattctttttct-gaaactgtctcttctgtctgtctctctgtctctgtctctgtctctctctctgtgaacatttgtcaaaatggtacctcaaa--acttttgtcatacccca----ggttccaaaactcccatggatgct---gataccagggtgatccaag---------tcttccattgtgcactggtagca-agtgacttcagcc---tcattagataat---tttatcttctaccatttc-ccttca--------------ctgatgcctacacttg----ggttcctc-caccatgc--tgggttttcttgctgtGTCATGGTGCGTGTACTAAA------TCTCACCTGGACTTCCTGGTTTT---ACTCTCTCTGTTTCTTAGACAGCACACTGCACTACGTCCCGGCACAG--------G----TCCATGTCTGTGAACCTGCAAACCTGATGATGCTTGCTTTTCCC--AACATGCAAACCTCTCACATGCTACCTGTCACTTCCTGCTTCCGATATTTGCTTCTTGTTTACATCTTCATCT-ATTTGGTCCATACTCGCTCAATATGTTCAT----CGTG-------TAACAAGGTCCTAGAACTGGAG-CTCAAAGATGAATTGCACCCTGCCCTTTCGGTCAGA-AGCTCAAA-------C--------AGAGAGATAAAAGCAAAAGTCAGGACGAT-GCCATGCTCAAGGTAGAGCAGAAGGAGAGCTCAGAGAGGAGATAA----GACCTGACTGAAGA----GGTTCAGAAGGGAA-----------------------------------CCGGGTTCCTTGTCCAGTGGCAATGTGAAATGATGAACAGAAG-------------CCGGCGTTAGGCTTGTATA-ACCACA---TAGCATCTCCTACCTGCGACACGttggtttgct-gtgtgtaaaataggaacaacatcatttaccttgaagatttgtgccaagggatggtg--------agatccaaaagttgtaaaacaatgccagccaacag-------------------------gactgtctgggaactgtgcaggtgtccaacaagtggg i mm10.chr11 C 0 C 0 s canFam3.chr9 21411975 866 + 61074082 TGGACTACTACAATCACCTCCTTGCTAGTCCCTTTGCCTCCAGCCTTACCTTCATTTTGCT-AAAACAG--------------------------------------------ATAAATGTTTGCT-AAACATTTCCTAAAACTTCTT---------------------------------------------CCTCCAGGGTAATC-------------TTTGTCATAGAGAACTTCTACCATATGGCCTTC-----ATTTCCCATAC-GC---TTTTTTTTCTACCACCTC-TCTTCACAGCTCTCCCCTCCTAGGCA-CTAGTCTCAC----------C-AACCAGACCTTGGGCTCTCCTGTCCACTG--TGTGTCCACACCATTCT-----TTCACCTGTAGGGCCCATGTTC---TT--CCTTTGAGTCTCAGA-AGC------CTTGTC-TCCCAGCACAC--------A----TCTGTACCTGTGAACTTCCCATCCTGGCAGTGCCCTCTTGCCCC--ATTACCTCAACTTTGCACTTACCACTTACCATTTCCCACTTTAGATTATTATCTCATGTTCATTCCttcatccacttg-acacacact-attgag--ggtttac----taaa-------taccatgcacttagagctgaggattcagag---aattagaccctatccctaccttcagggaactgaga-------t--atag--agatatatgagcacaggagttgtg-cact-gccatgctcaaggt-----gagatgaaagctcacagaggaagaagaaatgatctgtcttaagaagttag----ggaaggAG-----------------------------------ATGGTTCATTTGTATTTAAGTAGCATGGAATGATGGAAAGAAC--------AGAGATATGTGTTGGAATTCTGGC-TTCACAATGTATTACTTcttactttctatgcctctatctacccatctgtaaaatgggaataatattatgtaccttgaaggatcatggtaaggtgttaatga-----------------------gatcatgtttgtgaaaaaggtcaag------------------taccaagataagcctgtgcaagtgctcaacaa----- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 389815 961 - 852752 TGGACTATTGCAATAAACTCCCTGCAGG-CCCACTGCATCCAGCCTTACCTCCAT-TTCCT-AAAACAT----------------------------------------------------------------------------CTTTGATCACATCC--CCCAGGCTCAAAAGCTTACATTGCCTCTGCTGCTTCCATGGAAATCCAACCACCTTAGCTTTGCCACCAAGGACCTTGACCATCTGGCCGCCA------CCTCCGTGAAGCAGTTTTATTTTACTCCACTCC-CTTTCACAGTTCTCCCCTCCTGGCTCCCTAGACTTACCTGGGTCCTTCAAATTTTGTTTTGGGCTTTCCTCCCTCATTCCTGCAAGTCCACCATTTT----CCCCATCTGCCGTACCTTCTTCCCCGCTTCTCTCT-CTTCCTAAA-AGC------CTCCCCATTCTAGCATAA--------AAGTTGACATTTCTGTGAACTTCCAAGGCTCAGTGTGTTCTCTCTCTCATGAGTATCTAAACTATTCCCCTGTCACTTATCATCTCCTGCCTCAGATGATTATTTTATGTTCATTCTttcaacc-atccaactcacatctattgaa------tatctgctgtg-------tactatatgacttgag-tggtgattcaaaggtggattagatactgccctt------cggaaattcacaggggtggt--ggaa--agagaga---------aaatcgtggcaacagtcatgctcagggt-----aaaatgagagctcagagaggaggaagtggtaatctgttttaaaa----ag-ttaggaagAAAAAAATAAAGAAACAAACAGAAAAAAATGAGGATGGATAGGCCATCTACGCTTAAgcagcatgatatagtagaaagaatagagaaatagagacctgtgttggaagtctggt-ttcacaaagtactaactcctaccctctaagccttgatttgcccacctgtaaaacggggacgatatcatctaccttgaagagtttcagtgaggagtgaacga-----------------------gatcatgtttgtgaaaag------------------tgctaa-caccacatgtgccctctgcaggtgctcagcgagtgag i dasNov3.JH570468 I 981 I 455 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=67963.000000 s hg38.chr17_GL383564v2_alt 88788 6 + 133151 AA--CTTC s panTro5.chr17 16275365 6 + 83181570 AA--CTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16182817 6 + 83442489 AA--CTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4017850 6 + 4267968 AA--CTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000150 6 - 2193130 AA--CTTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30071639 6 - 77216781 AA--CTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27983932 6 - 80997621 AA--CTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2041643 6 + 10377808 AA--CTTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1926595 6 - 8458610 AA--CTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882117 6 + 75148670 AA--CTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2111628 6 + 4244037 AA--CTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134025 6 + 4569836 AA--CTTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106055 6 - 159171411 AG--CTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1816298 6 + 3513951 AG--CTTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1865201 6 + 1920343 AG--CTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6980188 6 - 7032639 AG--CTTC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22797691 8 + 28711273 aagTCTTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22065710 6 - 122082543 ag--ttcC i mm10.chr11 C 0 C 0 s canFam3.chr9 21412841 6 + 61074082 ag--gttT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I e dasNov3.JH570468 390776 455 - 852752 I a score=1526269.000000 s hg38.chr17_GL383564v2_alt 88794 138 + 133151 TTCTGACCATAGCATTGAGTCCTATTTTCCACCCCTCCCAGTGTCTATTACATCGCCCTGGATGAA--AT--TGTCATAGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ACATGA---AAA------AAGCCCATCATATCAG s panTro5.chr17 16275371 138 + 83181570 TTCTGACCATAGCATTGAGTCCTATCTTCCACCCCTCCCAGTGTCTATTACATCGCCCTGGATGAA--AT--TGTCATAGTGGATATCTATTATTTGGTTGATTGACCTCAT-------CATGG--ACATGA---AAA------AAGCCCATCATATCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16182823 138 + 83442489 TTCTGACCATAGCACTGAGTCCTATCTTCCACCCCTCCCAGTGTCTATTACATCGCCCTGGATGAA--AT--TGTCATAGTGGATATCTATTATTTGGTTGATTGACCTCAT-------CATGG--ACATGA---AAA------AAGCCCATCATATCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4017856 138 + 4267968 TTCTGACCATAGCATTGAGTCCTATCTTCCACCCCTCCCAGTGTCTATTACATCGCCCTGGATGAA--AT--TGTCGTAGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ACATGA---AAA------AAGCCCATCATATCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000156 138 - 2193130 TTTTGACCATAGCATTGAGTCTTATCTTCCACCCCTCCCAGTGTCTATTACATCGCCCTGGATGAA--AT--TGTCGTAGTGGATATCTATTATTTGGTTGATTGGTGTCAT-------TATGG--ATATGA---AAA------AAGCCCATCATATCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30071645 134 - 77216781 ---TGACTATAGCATTG-GTCCTATCTCCCACCCCTCCCAGTGTCTATTACATCACCCTGGATGAA--AT--TGTCCTCGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ATATGA---AAA------AGGCCCATCATATCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27983938 134 - 80997621 ---TGACTATAGCATTG-GTCCTATCTCCCACCCCTCCCAGTGTCTATTACATCACCCTGGATGAA--AT--TGTCCTCGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ATATGA---AAA------AGGCCCATCATATCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2041649 134 + 10377808 ---TGACTATAGCATTG-GTCCTATCTCCCACCCCTCCCAGTGTCTATTACATCACCCTGGATGAA--AT--TGTCCTCGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ATATGA---AAA------AGGCCCATCATATCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1926601 134 - 8458610 ---TGACTATAGCATTG-GTCCTATCTCCCACACCTCCCAGTGTCTATTACATCACCCTGGATGAA--AT--TGTCCTCGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ATATGA---AAA------AGGCCCATCATATCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882123 131 + 75148670 ---TGACCATAGCATTG-GTCCTATCTCCCACCCCTCCCAGTGTCTATTACATCACCCTGGATGAA--AT--TGTCCTGGTGGATATCTATTATTTGTTTGATTGACGTCAT-------CATGG--ATATGA---AAA------AGGCCCATCAT---AG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2111634 134 + 4244037 ---TGACTATAGCATTG-GTTCTATCTCCCACCCCTCCCAGTGTCTATTACATTACCCTGGATGAA--AT--TGTCCTCGTGGATATCTATTATTTGGTTGACTGACGTCAT-------CATGG--ACATGA---AAA------AGGCCCATCATATCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134031 134 + 4569836 ---GGACCATAGCATTG-GTCCTATCTCCCACCCCTCCCAGTGTCTATTACATCACCCTGGATGAA--AT--TGTCCTAGTGGATATCTATTATTTGGTTGATTGACGTCAT-------CATGG--ATGTGA---AAA------AGGCCCATCATATCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106061 137 - 159171411 TTCTGCCCATAGCATTG-GCGCTATCTCCAACCCCGCCCAGTGTCTACTACACCACCCTGGATGAA--AT--TGTCCTAGTGGATATCTATTATTTGGTTGATCAACGTCAT-------CATGG--ATATGA---AAA------AGGCCCATCATATCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1816304 137 + 3513951 TTCTGCCCATAGCATTG-GCCCTATCTCCAACCCCTCCCAGTATCTACTATGCCACCCTGGATGAA--AT--TGTCCTAGTGGATATCTATTATTTGGTTGATTGACGGCAT-------CATGG--ATATGA---AAA------AGGTCCATCATATCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1865207 137 + 1920343 TTCTATCCATAGCATTG-GCCCTATCTCCAACCCCTCCTAGTGTCTACTACACCACCCTGGATGAA--AT--TGTCCTAGGGGATATCTACTATTTGGTTGATCGACGGCAT-------CATGG--TTATGA---AAA------AGGCCCATCATATCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6980194 136 - 7032639 TTCTGCCCATAGCATTG-GTCCTATCTCCAACCCCTCCCAGTGTCTACTACAGCACCCTGGATGAA--AT--TGTCCTAGTGGCTATCTATTATTTGGTTGATCGACATCAT-------CATGG---TATGA---AAA------AGGCCCATCATATCAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22797699 138 + 28711273 ---TGATCCCAACACTG-GTCCTTCCTTTCTCTCCTCACAGTGTCCAGTTCACGACCCGGGACAAGCCAC--AATCCTGGTGGATATCTATCATTTTGTTGATTGACATTAT-------CTTGG--ATATGAGGGAGG------AAGTCCACTCTATT-G i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22065716 144 - 122082543 CTCTGCCTGTAGCACTT-GTCC-ACCTTCCTCTCCTTGAAGTGTCTAGTACCTCGATTGAGATAAG--ATGCGATCCTAGT-GCTGTCTGCGATGTGATTGGTGGACGGTATCTACAAGCAGGG--TCACAA---AGA------AGCTAGGCTATCTCAG i mm10.chr11 C 0 I 37 s canFam3.chr9 21412847 120 + 61074082 ---TGACCATAGCCCTG-GTCCTACCTTCCA------------TTTTGTACCATGCCCTGTACATACTGT--TATCCTGGTGAATATCTGTTATTTGGTTAATTTACATTTT-------CATGG--ATATGA-------------TGTCTGCCACATGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 391231 146 - 852752 TTCCAGCCACAGCACTT-GTCCTGCTTTCCCTGCCCCACAGTGTCTAG-ACACTGCCCTTTACAAACCAT--GATCCTAGTGAACATTTGTTATTTAGTTAACTGAAATTCA-------AAGGGGAAAATTA---AAGGCTACCAGGCTCACCACACCAG i dasNov3.JH570468 I 455 C 0 e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=216754.000000 s hg38.chr17_GL383564v2_alt 88932 16 + 133151 GAAACATGGCCATCAG s panTro5.chr17 16275509 16 + 83181570 GAAACATGGCCATCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16182961 16 + 83442489 GAAACATGGCCATCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4017994 16 + 4267968 GAAACATGGCCATCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000294 16 - 2193130 GAAACATGGCCATCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30071779 16 - 77216781 GAAACGTGGCCATCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984072 16 - 80997621 GAAACGTGGCCATCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2041783 16 + 10377808 GAAACGTGGCCATCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1926735 16 - 8458610 GAAACGTGGCCATCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882254 16 + 75148670 GAAACGTGGCCATCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2111768 16 + 4244037 GAAACGTGGCCATCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134165 16 + 4569836 GAAAGGTGGCCATCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106198 16 - 159171411 GAAACGTGGCCATCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1816441 16 + 3513951 GAAATGTGGCCATCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1865344 16 + 1920343 GAAACGTGGCCATCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6980330 16 - 7032639 GAAACGTGGCCATCAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22797837 16 + 28711273 GAAGGAAGGCCACCAG i otoGar3.GL873537 C 0 I 14 s canFam3.chr9 21412967 16 + 61074082 GAAACAGGGCCACTGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 391377 16 - 852752 GAAACGGGGCCATTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22065860 37 - 122082543 I e proCoq1.NW_012135969v1 2980603 6281 + 8555354 I e micMur3.chr16 35894093 5340 - 65901067 I a score=671795.000000 s hg38.chr17_GL383564v2_alt 88948 45 + 133151 GAAC--------------TGTCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA s panTro5.chr17 16275525 45 + 83181570 GAAC--------------TGTCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16182977 45 + 83442489 GAAC--------------TGTCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018010 45 + 4267968 GAAC--------------TGTCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000310 45 - 2193130 GAAC--------------TGTCCCAGAAAGGATATATTCCTCTTTCTGAGAATCATGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30071795 45 - 77216781 GAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984088 45 - 80997621 GAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2041799 45 + 10377808 GAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1926751 45 - 8458610 GAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882270 45 + 75148670 AAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2111784 45 + 4244037 GAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134181 45 + 4569836 GAAC--------------TGCCCCAGAAAGGATCTATTCCTCTTTCTGAGAACCATGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106214 45 - 159171411 GAAC--------------TGTCCCAGAAAGGATCTGTTCCTCTTTCTGAGAACCATGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1816457 45 + 3513951 GAAC--------------TGTCCCAGAAAGGATCTTTTCCTCTTTCTGAGAACCATGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1865360 45 + 1920343 GAAC--------------TGTCCCAGAAAGGATCTGTTCCTCATTCTGAGAACCATGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6980346 45 - 7032639 GAAC--------------TGTCCCAGAAAGGATCCGTTCCTCTTTCTGAGAACCATGAA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2986884 45 + 8555354 GAAC--------------TGTTGCAGAAAGGATCTATTCCTTTTTCTGAGAACCATAAA i proCoq1.NW_012135969v1 I 6281 C 0 s otoGar3.GL873537 22797867 45 + 28711273 TAAC--------------CGTTCTAGAAAGGATCTATTCCTTTTTCAGAGAACCACAAA i otoGar3.GL873537 I 14 C 0 s canFam3.chr9 21412983 59 + 61074082 GAACCAGGGTGTTTTAAGTATTCCAGATGGGATCTATTCCTCTTTCTGAGAACCATGAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 391393 58 - 852752 GAACTATGCTGTTTTAGCTGTTCCAGA-ATGATCTACTCCTCTTTTCCAGAATCATGAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22065860 37 - 122082543 I e micMur3.chr16 35894093 5340 - 65901067 I a score=2310099.000000 s hg38.chr17_GL383564v2_alt 88993 168 + 133151 TTTGGAATTTGGCACTTGGAAATGTGACC-TAGCAAAAGACACA-GGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGA-GCTTGCCAAAGAGTTAGGGGCCTCAAGCCACAAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCACCCCACT-GAAGAAGG s panTro5.chr17 16275570 169 + 83181570 TTTGGAATTTGGCACTTGGAAATGTGACC-TAGCAAAAGACGCATGGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGA-GCTTGCCAAAGAGTTGGGGGCCTCAAGCCACGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCACCCCACT-GAAGAAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16183022 169 + 83442489 TTTGGAATTTGGCACTTGGAAATGTGACC-TAGCAAAAGACGCATGGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGGGCCAGA-GCTTGCCAAAGAGTTGGGGGCCTCAAGCCACGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCACCCCACT-GAAGAAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018055 169 + 4267968 TTTGGAATTTGGCACTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGA-GCTTGCTAAAGAGTT-GGGGCCTCAAGCCACGAAGCAGAACAGCG--ATACTGTCTCTTGACCTGCTGCACCCCACTGGAAGAAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000355 170 - 2193130 TTTGGAACTTGGCACTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGAGGCTTGCCAAAGAGTTGGGGGCCTCAAGCCACGAAGCAGAACAACA--ATACTGTCTCTTGACCTGCTGCACCCCACT-GAAGAAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30071840 170 - 77216781 TTTGGAATTCAGTACTTGGAAATGTGACC-CAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCACCATGGGGAGCCGGAGGCATGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCATCCCACT-GATGAAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984133 170 - 80997621 TTTGGAATTCAGTACTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCACCATGGAGAGCCGGAGGCGTGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCATCCCACT-GATGAAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2041844 170 + 10377808 TTTGGAATTCAGTACTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCACCATGGAGAGCCGGAGGCGTGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCATCCCACT-GATGAAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1926796 170 - 8458610 TTTGGAATTCAGTACTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGAGGCGTGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTCGACCTGCTGCATCCCACT-GATGAAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882315 170 + 75148670 TTTGGAATTCAGCACTTGGAAATGTGACC-TAGCAAAAGACACGTGGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGAGGCGTGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCATCCCACT-GATGAAGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2111829 170 + 4244037 TTTGGAATTCAGTACTTGGAAATGTGACC-TAGCAAAAGACACATAGGCAAGAGCTATGCTTTTCCATTTCACCAAGGAGAGCCAGAGGTGTGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCATCCCACT-GATGAAGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134226 170 + 4569836 TTTGGAATTTAGCACTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTTACCAAGGAGAGCCAGAGGCGTGCCAAGGAGTTGGGGGCCTCAAGTCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCATCCCACT-GATGAAGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106259 170 - 159171411 TTTGGAATTTGGCATTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTCCATCAAGGAGAGCCGGAGGCTTGCCAACGAGTTGGGGGCCTCAAGCCAGGAAGCAGAATAGCA--ATACTGTCTCTTGACCTGCTGCGCCCCACT-GATGAAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1816502 170 + 3513951 TTTGGAATTCGGCATTTGGAAATGTGACC-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCCATTTCATCAGGGAGAGCCAGAGGCTTGCCAAGGAGTTGGGGGCGTCAAGCCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGTACCCCACT-GATGAAGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1865405 170 + 1920343 TTTGGAATTTGGCATTTGGAAATGTGACT-TAGCAAAAGACACATGGGCAAGAGCTATGCTTTTCTATTTCATCAAGGAGGGCCAGAGGCTTGCCAAGGAGTTGGGGGCCTCAAGCCAGGAAGCAGAACAGCA--ATACTGTCTCTTGACCTGCTGCACCCCACT-GATGAAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6980391 170 - 7032639 TTTGGAATTCGGCATTTGGAAATGTGACT-TAGCAAAAGACACGTGGGCAAGAGCTATGCTTTTCCATTTCATCAAGGAGAGCCAGAGGCTCGCCAAGGAGTTGGGGGCCTCAAGCCAGAAAGCAGAACGGCA--ATACTGTCTCTTGACCTGCTGCACCCCACT-GATGAAGG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2986929 144 + 8555354 TTTGGAATTTGGCATTTGGAAATTTGACA-TAGCAAAATATACATGGGCAAGAGCTGTGCTTCTTCATTTCAGCAAGGA---------------------GTTGGGGCCCTCAAGCCAGAAAGCAGGGCAACACTGTCCTGTGCC------CACCACACCCCACT-AATGAGC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22797912 168 + 28711273 TTTGGAA-TTGGCATTGGGAAATCTAATG-TAGCAGAAGATACACGGGTAAAAGCAGTGCGTCCCCATTTCATCAAGGATTGCCAGTGGCCCCCCAAGGCGTTGGGGTTCTCCAGCCAGGACGCAGAGCAGCA--GTACTGTCCCTTGGGGTGCCACACCCCATT-AATGAGG- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22065897 161 - 122082543 tttgttgtttgAAAACTGTGATTCTGACCTTTGGAAATCGGGCATAGG-AAGAATTCTGCTTCTCTGTTTCATTGAGCAGGACCAGTGGCTCACTCAAGTGTCAGGGGCCCTCA---------CAGAGTAGCA--GCACTGTCCCTTGACCTACCACACCCTATT-AATGAAGG i mm10.chr11 I 37 C 0 s canFam3.chr9 21413042 150 + 61074082 -------TTTGGCATTTGGAAATCTGACC-TGGCAAAAGATACATGGGCAAGAGCTGTGCTTTCTCATCTTAGCAAGAAGA-------------CAAGGAGTCAGGGCCATCAAGCCAGGTGGCAAAGCAGCA--ACAGTGTCCCTGGACCTGCCACACCCCACT-AATGAAGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 391451 160 - 852752 -------TTTGGCATTTGCAAATTTGACT-TAG-AAAATACACATGGGC-TGTGTCAGGCTTTTTCATGGCAGCAAGAAGAGCCAGAGTCTCACCAAGGAATCCGTGCGCCCGAGCCAGGAAGTAAAGCAGTC--ATACTGTCCCTCTGCTTGCCACACCCTG-T-AATGAGGG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35894093 5340 - 65901067 I a score=7468129.000000 s hg38.chr17_GL383564v2_alt 89161 447 + 133151 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCATGAAGCTCTTACATCA-TGACACACAGCATGGA-AGAGGAGTCCCGACTTAGCGAGAAGCCCAAGTAAAGTATTTTATGAGGGGAGAGACTCTTCTGAAGAAACACA--ACAAA--TGGA-GGGAAGGGCTTTTGACAATCACCAAATGAGC--------aaaaaaaaaaaaaaaaaaaaGG----------GGTTGTCTTACGTGTCCACACCCTCCATGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACCGCTCTACAACCTGGAGATTTTGGACTCTGTCTTCAGCTGGACA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGTGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG s panTro5.chr17 16275739 451 + 83181570 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCATGAAGCTCTTACATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTATTTTATGAGGGGAGAGACTCTTCTGAAGAAACACA--ACAAA--TGGA-GGGAAGGGCTTTTGACAATCACCAAATGAGC----aaaaaaaaaaaaaaaaaaaaaaaaGG----------GGTTGTCTTACGTGTCCACACCCTCCATGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACCGCTCTACAACTTGGAGATTTTGGACTCTGTCTTCAGCTGGACA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAACCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16183191 443 + 83442489 CCAGGACTTTCATGAGTCCAGGTCTTTGAAGTCACACCATGAAGCTCTTACATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTATTTTATGAGGGGAGAGACTCTTCTGAAGAAACACA--ACAAA--TGGA-GGGAAGGGCTTTTGACAATCACCAAATGAGC------------AAAAAAAAAAAAAAAGGG----------GTTAGTCTTACGTGTCCACACCCTCCATGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACCGCTCTACAACTTGGAGATTTTGGACTCTGTCTTCAGCTGGACA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAACATGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018224 449 + 4267968 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCATGAAGCTCTTACATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTATTTTATGAGGGGAGAGACTCTTCTGAAGAAACACA--ACAAA--TGGA-GGGAAGGGCTTTTGACAATCACCAAATAAGC-----CaaaaaaaaaaaaaaaaaaaaaaGG----------GGTTGTCTTACGTGTCCACACCCTCCATGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACCGCTCTACAACTTGGAGATTTTGGACTCTGTCTTCAGCTGGACA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTG-CCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000525 453 - 2193130 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCATGAAGCTCTTACATCA-TGACACACAGCATGGC-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGGAGAGACTCTTCTGAAGAAGCACA--ACAAA--TGGA-GGGAAGGGCTTTTGACAATCACCAAATGAGC------------AAAAAAAAAAAAAAAAGGTGGGGGGGGCGGTTGTCTTACATGTCCACACCCTCCACGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACCGCTCTACAACTTGGAGATTTTGGACTGTGTCTTCAGCTGGACA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30072010 457 - 77216781 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCACGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--TGTA-GGGAAGGGCTTTTGACAATCACCAAATGAGC--aaaaaaaaaaaaaaaaaaaaaaaaaaGGTGGG------GGTTGCCTTACGTGGCCACACCCTCCACGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACTGCTCTACAACCTGGAGATTTTGGACTCTGTCTTCAGCTGGACA-CT-----CCCTCCCT------------TCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984303 457 - 80997621 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCACGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--AGTA-GGGAAGGGCTTTTGACAATCACCAAATGAGC--aaaaaaaaaaaaaaaaaaaaaaaaaaGGTGGG------GGTTGCCTTACGTGGCCACACCCTCCACGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACTGCTCTACAACCTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2042014 459 + 10377808 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCACGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--TGTA-GGGAAGGGCTTTTGACAATCACCAAATGAGCaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGTGGG------GGTTGCCTTACGTGGCCACACCCTCCACGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACTGCTCTACATCTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTTCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1926966 452 - 8458610 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCACGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--TGTA-GGGAAGGGCTTTTGACAATCACCAAATGAGC-------aaaaaaaaaaaaaaaaaaaaaGGGGGG------GGTTGCCTTACGTGGCCACACCCTCCACGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACTGCTCTACAACTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882485 451 + 75148670 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCACGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--TGTA-GGGAAGGGCTTTTGACAATCACCAAATGAGC--------aaaaaaaaaaaaaaaaaaaaGGGGGG------GGTTGCCTTACGTGGCCACACCCTCCACGGACGAGGTATAAATGCTCCCCGGAGGAAGGAGACCCACTGATCTACAACTTGGAGGTTCTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2111999 455 + 4244037 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCACGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--TGTA-GGGAAGGGCTTTTGACAATCACCAAATGAGC----aaaaaaaaaaaaaaaaaaaaaaaaGGTGGG------GGTTGCCTTACGTGGCCACACCCTCCACGGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACTGCTCTACAACTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTACCTGGGGCCTGCAACATCCCCG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134396 447 + 4569836 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCACACCATGAAGCTCTTGCATCA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGGAAGAGACTCTTCTGAAGAAACACA--ACAAA--TGTA-GGGAAGGGCTTTTGACAATCACAAAATGAGG------------aaaaaaaaaaaaaaaaaaGGAG------GGTTGCCTTACGTGTCCACACCCTCCACAGACGAGGTATAAATGCTCCCTGGAGGAAGGAGACCCACTGCTCTACAACTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCT------------GCACCATGTCTTACAGTTGTGGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCTCGGCCCTGCGTGCCCCCTAGCTGCCATGGCTGCACCCTACCTGGGGCCTGCAACATCCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106429 447 - 159171411 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCATACCACGAAGCTCTTACGTTA-TGACGCACAGCATGGA-AGAGGAGTCCTGACTTAGTGAGAAGCCCAAGTAAAGTCTTTTATGAGAGGAGAGACTCTTCTGAAGAAACATA--ACAAA--TGGA-GGGAAGAGCTTTTGACAATCACCAAATAAGC--C------------------AAAAAAAGGGGGG------GGTTGCCTTACATGTCCACACCCTCCATAGACGAGGTATAAATGCTCTCCAGAGGAAGGAGACCCACTGCTCTGCAGCTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CACTCCTTTCCTCCCT----GCACCATGCCCTACAACTTCTGCCTCCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGGCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1816672 467 + 3513951 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCATACCACGAAGCTCTTACGTTA-TGACACACAGCATGGA-AGAGGAGTCCTGACTTAGTGAGAAGCCCAAGTAAAGTCTTTTATGAGAGGAGAGACTCTTCTAAAGAAACATA--ACAAA--TGGA-GGGAAGAGCTTTTGACAATCACCAAATAAGC--CaaaaaaaaaaaaaaaaaaaaaaaaaGGAGGT------GGGTG--TTACATGTCCACACCCTCCACAGACGAGGTATAAATGCTCTCCAGAGCAAGGAGACCCACTGCTCTGCAGCTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTTCCTCCCTCCCTCCCAGCACCATGTCTTACAGTTGCTGCCTGCCCAGCCCGAGCTGCCGCACCAGCTGCTCGTCCCGGCCCTGTGTGCCCCCCAGCTGCCACAGCTGCACCCTACCCGGGGCCTGCAACATCCCCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1865575 453 + 1920343 CCAGGGCTTTCATGAGTTCAGGTCTTTGAAGTCATACCACGAAGCTCTTACGTTA-TGACGCACAGCATGGA-AGAGGAGTCCTGACTTAGTGAGAAGCCCAAGTAAAGTCTTTTATGAGAGGAGAGACTCTTCTGAATAAACATA--ACAAA--TGGA-GGGAAGAGCTTCTGACAATCACCAAATAAGC--C------------AAAGAAAAAAAAGGGGGGG------GTTTGCCTTACACATCCACACCCTCCACAGACAAGGTATAAATGCTCTCCAGAGGAAGGAGACCCACTGCTCTGCAGCTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----CCCTCCCTCCCTCCTT----GCACCATGCCCTACAACTGCTGCCTGCCCAGCCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6980561 449 - 7032639 CCAGGGCTTTCATGAGTCCAGGTCTTTGAAGTCATACCACGAAGCTCTTACGTTA-TGACGCACAGCATGGA-AGAGGAGTCCTGACTTAGTGAGAAGCCCAAGTAAAGTCTTTTATGAGAGGAGAGACTCTTCTGAAGAAACATA--ACAAA--TGGA-GGGAAGAGCTTTTGACAATCACCAAATAAGC--C----------------AAAAAACAGGGGGGG------GGTTGCCTTACATGTCCACACCCTCCACAGACGAGGTATAAATGCTCTCCAGAGGAAGGAGACCTACTGCTCTGCAGCTTGGAGATTTTGGACTCTGTCTTCAGCTGGGCA-CT-----ccctccctccctccct----gcaccatgccctacaactgctgcctgcccagcctgagctgccGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35899433 436 - 65901067 CCAGGGCTTTCATGAGTCCAGCTCTTTGAAGCCGCACCATGAAGCTCTTACGTCA-TGACACGCAGCATGGACAAAGGAGTCCTGACTTAGCGAGAAGCCCGAGTGGAGTCTTTTATGAGGGTAGGGACTCTTCTGAGGAG-------ACAAA--CGGAGGGGAAGGGC-TTTGATAATCAACAGATGAGC--------------AAAAAAAA-------GGGGG------GGGTGCCTCACATGTCCACACCCTCCACAG--GGGGTATAAATGCTGGGCAGAGGAAGGAGACTCACAGCTCTGCAGCTTGTAGAACTCAGACCTTGTCTTCAGCCGGGCA-CG-----CACTCCCTCCCA--------GCACCATGTCCTACACCTGCTTCCTGCCCAGCTTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACAGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i micMur3.chr16 I 5340 C 0 s proCoq1.NW_012135969v1 2987073 443 + 8555354 CCGGGGCTTTCATGAATCCAGCTCTTTGAAGCCACACCATGAAGCTCTTACGTCA-TGACACACAGTATGGA-AAAGGAGTCCTGACTTAGCGAGAAGCCCGAGTGGAGTCTTTTACGAGGGGAGGGACTCTTCTGAGGAGACACATAACAAA--CGGAGGGGAAGGGCTTTTGATAATCAAGAAATGAGC--------------AAAAAAAA-------GTGGG------GAGTGCCTCACACGTCCACACCCTCCGAAG--GGGATATAAATGTTCGGCAGAGGAAGGAGACCCACAGCTCTGCGGCTTGGAGAACTCAGACCCTGTCTTCAGCCAGGCA-CA-----CTCTCCCTCCCA--------GCACCATGTCTCTCACCTGCTTCCTGCCCAGCCTCAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACACCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i proCoq1.NW_012135969v1 C 0 N 0 s otoGar3.GL873537 22798080 447 + 28711273 CCGGGGCTTTCATGAGTCCAGCTCTTTGAAGCCACACCGTGAAGCTCTTACGTCA-TGACACGCAGCAGGGA---AGGAGTCCTGACTTAGCGAGAAGCCCAAGTGGAGTCTTTTATGAGGGGAGGGACTCTTCTGAGCAGACACATAACAAA--TGGAGGGGAAGGGCTTTTGATAATCAACAAATAAGA--------------AAAAAAAAAAAAAAGGAGGG------GGTTGCCTCACCTGTCCACACCCTCTGCAG--GGGGTATAAATGCTCAACCGAGGACGGACACCCACAGCTCTGAGGCTTGGAGAACCC-GACTCTGTCTTCAGCCCGGCA-CT-----CGTTCCCTCCCA--------GCACCATGTCTTACTCCTGCGTCCTGCCCAGCCTCGGCTGCCGCACCAGCTGCTCCTCCCGACCCTGCGTGCCCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22066058 453 - 122082543 TTGGGCCTTTCATGAGACCTACCCTTTGAAGTCATACCACCAAGCTCTTACCTCA-TGATGGATGGCACGGC-A-AGGAGTCCCGACTGAGGGAGAAGCCCAAGTAAAGCCTTTTATGAGGTAAGGGAGTCTTCTGAGGAAGCAGA--GCAAA--TGAA-TGGGGTAGCCTTTGACCATCACTAAATGAGC---------AAAGCCAAAAGAAAAAAGAGAGAGA------GACTGACTTATACGTCCCCACCCAATTTGGAGTGGATATAAAAGCTCACCAGAGGAAGGGGACTCAGAGCTCTGAGGCTTGGAGAATACACACCTCATCTTCAGCCAGGCACCT-----CCCTCCCTCCA---------GCACCATGCCATACAACTGCTGCCTGCCCGCCATGAGCTGCCGCACCAGCTGCTCTTCCAGGCCCTGCGTGCCCCCCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCG i mm10.chr11 C 0 C 0 s canFam3.chr9 21413192 442 + 61074082 CCAGGGCGTTCATGAGTCCAGCTCTTTGAAGTCACTCCATGAAGCTCTTACTTCATTGATGCACAGCATGGA-AGAGGAGTCCTGAGTTAGCGAGAAGCCCAAGTAAAGTCTTTTATGAGGTGAGGGACTCTTCTGAGGAAACATA--ACAAAACCAAG-GGGAAGGGCTTTTGACAATCACCAAATGAGT-------------------AAGAAAAAAAG----------GGTTGCCTTCCATGTCCACACCCACTGTGGAGGGGGTATAAATGCTCCTCAGGAGAAGGAGACCCACAGCTCTGTGG-TTGTAGAACTTGAACTCTGTGTTCAGCCAGGTGCCT-----TGCTCCCTCCA---------GCACCATGCCTTACAACTGCTGCCTGCCCAACCTGAGCTGCCGCTCCACCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCATACCTGCACCCTGCCTGGGGCCTGCAACATCCCCG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 391611 412 - 852752 CCAGGGCTTTCATGAGGGCAGCTCTTTGAAGCCACACTCTGAAGCCCTT--------------------GGA-AGAGAAGTCCTGACTTAGCGAGAAGCCCGAATAAAGTCTTTTATGAGGTGAGGGACTCTTCTGAGGAAACATATAACAGA--CAGT-GGGGA------------CTCACTGAATGATT---------------AAAAAGGTTTAAAAG----------GGCCACATTCCATGTCCACGCCCTCTGCAGATGGGATATAAAGGCTCCCCAGAGGAAGGAGAAGCACAG----ACTCCCAGGAGAACCAGGACTCTTCCTCCTTCCAGGCT-CCGCAAACCCTGCCA------------GCGCCATGTCGTACAACTGCTGCCTGCCCAACCTGAGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCCCCAGCTGCCACGGCTGCACGCTGCCCGGGGCCTGCAACATCCCCG i dasNov3.JH570468 C 0 C 0 a score=1211297.000000 s hg38.chr17_GL383564v2_alt 89608 65 + 133151 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATG s panTro5.chr17 16276190 65 + 83181570 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16183634 65 + 83442489 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018673 65 + 4267968 CCAATGTGAGTAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2000978 65 - 2193130 CCAATGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30072467 65 - 77216781 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984760 65 - 80997621 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGTGAGAAGGAGACCATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2042473 65 + 10377808 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1927418 65 - 8458610 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64882936 65 + 75148670 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2112454 65 + 4244037 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134843 65 + 4569836 CCAATGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106876 65 - 159171411 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1817139 65 + 3513951 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGATCCTTCAATGGTAGCGAGAAGGAGACCATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1866028 65 + 1920343 CCAACGTGAGCAACTGCAACTGGTTCTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6981010 65 - 7032639 CCAACGTGAGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACCATG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35899869 65 - 65901067 CCAACGTGGGCAGCTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGGGAGAAGGAGACCATG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22798527 65 + 28711273 CCAACGTGGGCAACTGCAACTGGTTCTGCGAGGGCTCCTTCAATGGCAGAGAGAAGGAGACCATG i otoGar3.GL873537 C 0 M 94 s mm10.chr11 22066511 65 - 122082543 CCAATGTGGGCAACTGCAATTGGTTCTGTGAGGGCTCCTTCAATGGCAATGAGAAGGAGACCATG i mm10.chr11 C 0 C 0 s canFam3.chr9 21413634 65 + 61074082 CCAACGTGGGCAACTGTGGCTGGTTCTGTGAGGGTTCCTTCAATGGCAGCGAGAAGGAGACCATG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 392023 65 - 852752 CCAACGTGGGCAGCTGCGGCTGGCTCTGCGAGGGCTCCTTCAATGGCAACGAGAAGGAGACCATG i dasNov3.JH570468 C 0 C 0 a score=1069071.000000 s hg38.chr17_GL383564v2_alt 89673 63 + 133151 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC s panTro5.chr17 16276255 63 + 83181570 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16183699 63 + 83442489 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018738 63 + 4267968 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2001043 63 - 2193130 CAGTTTCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAA-AAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30072532 63 - 77216781 CAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984825 63 - 80997621 CAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTACGTCAGCTGGAGCGGGAC-AAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2042538 63 + 10377808 CAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1927483 63 - 8458610 CAGTTCCTGAATGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64883001 63 + 75148670 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2112519 63 + 4244037 CAGTTCCTGAACGACCGTCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAC-AAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134908 63 + 4569836 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAA-AAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46106941 63 - 159171411 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAG-AAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1817204 63 + 3513951 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAG-AAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1866093 63 + 1920343 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTggagaaggtgcgtcagctggagcgggag-aac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6981075 64 - 7032639 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAGAAAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35899934 63 - 65901067 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCGGCTGGAGCGGGAG-AAC i micMur3.chr16 C 0 C 0 s mm10.chr11 22066576 63 - 122082543 CAGTTCCTGAATGACCGCCTGGCCTCCTATATGGAGAAGGTGAGGCAGCTGGAGAGAGAG-AAT i mm10.chr11 C 0 C 0 s canFam3.chr9 21413699 63 + 61074082 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGTCAGCTGGAGCGGGAG-AAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 392088 63 - 852752 CAGTTCCTGAACGACCGCCTGGCCAGCTACCTGGAGAAGGTGCGCCAGCTGGAGCGGGAG-AAC i dasNov3.JH570468 C 0 C 0 e otoGar3.GL873537 22798592 94 + 28711273 M a score=896014.000000 s hg38.chr17_GL383564v2_alt 89736 56 + 133151 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCACAGCAGCAGGAGCCCTTGGTGTG s panTro5.chr17 16276318 56 + 83181570 GCAGAGC-TGGAGAACCTCATCCGGGAGCGGTCACAGCAGCAGGAGCCCTTGGTGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16183762 56 + 83442489 GCAGAGC-TGGAGAACCTCATCCGGGAGCGGTCACAGCAGCAGGAGCCCTTGGTGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018801 56 + 4267968 GCAGAGC-TGGAGAACCTCATCCGGGAGCGGTCACAGCAGCAGGAACCCTTGGTGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2001106 56 - 2193130 GCAGAGC-TGGAGAACCTCATTCGGGAGAGGTCACAGCAGCAGGAGCCCTTGGTGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30072595 56 - 77216781 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGGTGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984888 56 - 80997621 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGGTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2042601 56 + 10377808 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGGTGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1927546 56 - 8458610 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCGCAGCAGCAGGAGCCCTTGGTGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64883064 56 + 75148670 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCGCAGCAGCAGGAGCCCTTGGTGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2112582 56 + 4244037 GCGGAGC-TGGAGAACCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGGTGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2134971 56 + 4569836 GCAGAGC-TGGAGAACCTCATCCGGGAGCGGTCGCAGCAGCAGGAGCCCTTGGTGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46107004 56 - 159171411 GCGGAGC-TGGAGCGCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1817267 56 + 3513951 GCGGAGC-TGGAGCGCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1866156 56 + 1920343 gcggagc-tggagcgCCTCATCCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTG i cebCap1.NW_016107730v1 C 0 M 3830 s aotNan1.NW_018502359v1 6981139 55 - 7032639 GCGGAGCTTGGAGCACCTA--TCGGGAGCGGTCCCAGCAGCAGGAGCCCTTGCTGTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35899997 56 - 65901067 GCGGAGC-TGGAGAGCCTCATCCAGCAGCGGTGCCAGGAGCAGGACCCCTTGGTGTG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22798686 56 + 28711273 GCGGAGC-TGGAGAGCCGCATCCAGGAGCGCTGCCAGGAGCAGGATCCCCTGGTGTG i otoGar3.GL873537 M 94 C 0 s mm10.chr11 22066639 56 - 122082543 GCAGAGC-TGGAATGTAGGATCCAGGAGAGGAACCAGCAGCAGGACCCCCTGGTGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21413762 56 + 61074082 GCGGAGC-TGGAGAGCCGCATCCGGGAGTGGTGCCAGCAGCAGGTGCCTTTCGTGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 392151 56 - 852752 GCGGAGC-TGGAGGGCCGCATCCATGAGTGGTGCCAGCAGCAGGTGCCCTTCGTGTG i dasNov3.JH570468 C 0 C 0 a score=6690505.000000 s hg38.chr17_GL383564v2_alt 89792 540 + 133151 TGCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCG-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGTTGTGATTGAGAAACA--ACGTAAGCTCT---TGATGTGAATGAAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTT-TTGAGGGCCCATCTAATACTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-ATGAGCTGTAATTAAAAACTACCTCTGAATGCTTCCATGCACCTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGAGAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAATCTTTTGTAAAGACTGGGCCATTTTCTTTCTCCCTCATCTGAGCTTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTAGGT-TCCTACTTATCCTGATTTCATTGTCCTCACCTTCATGCCTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG s panTro5.chr17 16276374 540 + 83181570 TGCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCT-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAACA--ACGTGAGCTCT---TGATGTGAATGAAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTT-TTGAGGGCCCATCTAATACTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-ATGAGCTGTAATTAAAAACTACCTCTGAATGCTTCCATGCACCTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGAGAGAAAAGGACTGAGTCCAA--AG-GAAGCTGAGGAAACGGAATCTTTTGTAAAGACTGGGACATTTTCTTTCTCCCTCATCTGAGCTTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTAGGT-TCCTACTTATCCCGATTTCATTGTCCTCACCTTCATGCCTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16183818 540 + 83442489 TGCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCT-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAACA--ACGTGAGCTCT---TGATGTGAATGAAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTT-TTGAGGGCCCATCTAATACTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-ATGAGCTGTAATTAAAAACTACCTCTGAATGCTTCCATGCACCTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGAGAGAAAAGGACTGAGTCCAA--AG-GAAGCTGAGGAAACGGAATCTTTTGTAAAGACTGGGACATTTTCTTTCTCCCTCATCTGAGCTTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTAGGT-TCCTACTTATCCCGATTTCATTGTCCTCACCTTCATGCCTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4018857 539 + 4267968 TGCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAAGGTGA--GGAGTGGGCG-ACACAGTGCCTCCAGTAGGAAGTTGTTGGGAGAGAATCCGAGCTGTGATTGAGAAACA--ACGTGAGCTCT---TGATGTGAATGAAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTT-TTGAGGGCCCATCTAATACTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-ATGAGCTGTAATTAAAAACTACCTCTGAATGCTTCCATGCACCTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGAGAGAAAAGGACTGAGTCCAA--AG-GAAGCTGAGGAAATGGAATCTTTTGTAAAGACTGGGCCATTTTCTTTCTCCCTCCTCTGAGCTTTTTGCCCCTTGGACTGCTGGCTGCCTCTGTC-TCTAGGT-TCCTACTTATCC-GATTTCATTGTCCTCACCTTCATGCCTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2001162 541 - 2193130 TGCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCG-ACACAGTGCCTCCAGGAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAACA--ACGTGAGCTCT---TGATGTGAATGAAAAGCTGAAAA--------CTGGCCTTCC---CATTTTATTTTCTTGAGGGCCCATCTAATATTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-ATGAGCTGTAATTAAAAACTACCTCTGAAGGCTTCCATGCACTTGCCAAGCTCCAGAATAATTA-CCCTGAGGTGAGAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAATCTTTTGTAAAGATTGGGCTATTTTCTTTCTCCCTCATCTGAGCTTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTATCCTGATTTCATTGTCCTCACCTTCATGCCTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30072651 541 - 77216781 CGCAAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCA-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAGCC--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTTCTTGAGGACCCATCTCATCTTAGACTTGGGACTGTTAGGTCTAAATATCTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGACAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAATCTTTTATAAAGATTGGGCTGTTTCCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCATTGTCCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27984944 541 - 80997621 CGCAAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCA-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAGCC--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTTCTTGAGGACCCATCTCATCTTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGACAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAATCTTTTATAAAGATTGGGCTGTTTCCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCATTGTCCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2042657 541 + 10377808 CGCAAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCA-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAGCC--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTTCTTGAGGACCCATCTCATCTTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGACAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAATCTTTTATAAAGATTGGGCTGTTTCCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCATTGTCCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1927602 541 - 8458610 CGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCG-ACACAGTGCCTCCAGCAGGAAGTTGTTGGGAGAGAATCCGAGCTGTGATTGAGAAGCC--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTA---CATTTTGCTTTCTTGAGGGCCCATCTCTTCTTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGACAGGAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACAGAATCTTTTGTAAAGATTGGGCTGTTTCCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCATTGTCCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64883120 541 + 75148670 TGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGG--GGAGTGGGCG-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAGCC--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGCTTTCTTGAGGGCCCATCTCTTCTTAGACTTGGGACTGTTAGGTCTAGATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGACAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAATGGAATCTTTTGTAAAGATTGGGGTGTTTCCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCACTGTCCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2112638 541 + 4244037 CGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGAGTGGGCG-ACACAGTGCCTCCAGTAGGAATTTGTCGGGAGAGAATCCAAGCTGTGATTGAGAAGCC--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGCTTTCTTGAGGGCCCATCTCATCTTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATTATTA-CCCTGAGGTGACAGAAAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAATCTTTTGTAAAGATTGGGCTGTTTCCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCATTGTCCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2135027 541 + 4569836 CGCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGG--GGAGTGGGCG-ACACAGTGCCTCCAGTAGGAAGTTGTCGGGAGAGAATCCGAGCTGTGATTGAGAAGCA--ATGTGAGCTCT---TGATGTGAATGGAAAGCTGAAAA--------CTGGCCTTTC---CATTTTGTTTTCTTGAGGGCCCATCTCATCTTAGACTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGTACTTTGCATAA-ATGAGCTGTAATTAAAAACTACTTCTGAATGCTTCCATGTGCTTGCCAAGCTCCAGAATGATTA-CCCTGAGGTGACAGAGAAGGACTGAGTCCAA--AG-GAAGCTGGGGAAACGGAGTCTTTTGTAAAGATTGTACTGTTTTCTTTCTCCCTCATCTGAGCGTTTTGCCCCTTGGACTGCTGGCTGCCTCTCTCTTCTGGGT-TCCTACTTACCCTGACTTCATTGACCTCATCTTCATAACTCTGGGCTTCTCCTGGTGCACAGTGTCCAGTGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46107060 540 - 159171411 CCCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGAG-GGGGTGGGCG-ACACAGTGCTTCTAGCAGGAAGCTGTCAGAAGAGAATCTGAGCTCTGATTGAGAAACA--ATGTGGGCTCT---TGATGTGAATAAAAAGCTGAACA--------CTGGCCTTTT---TATTTTGTTTTCTTGAGGGCCCATCTAATCTTAGGCTTGGGACTGTTAAGTCTAAATATTTGCATAGTGGTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-AAGAGCTGTAATTAAAAATGACCTCTGAATGCTTCCCTGCACTTGCCAAGCTCCAG-ATTATTATCCTTGAGGTGAGAGAAAAGGACTGAGTCCAG--AG-GAAGCTGGGGAAATGGAATCTTTTGTAAAGATTGGGTGGTTTTCTCTCTCCCTCATCTGAGCTTTCGGCTGCTTGGACTGCTGGCTGCCTCTCT--TCTGGGT-TCCTACTTACCCTGACTTTATCGTCCTCACCTTCATGCCTCTGGGCTTTTTCTGGTGCACAGTGTCCAGTGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1817323 540 + 3513951 CCCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGAG-GGGGTGGGCG-ACACAGTGCCCCTAGCAGGAAGTTGTCAGGAGAGAATCTGAGCCCTGATGGAGAAACA--ATGTGAGCTCT---TGATGTGAATAAAAAGCTGAACA--------CTGGCCTTTT---TATTTTGTTTTCTTGAGGGCCCATCTAATCTTAGGCTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-ATGTGGAGGTAGCAGCACTTTGCATAA-AAGAGCTGTAATTAAAGATGACCTCTGAATGCTTCCCTGCACTTGCCAAGCTCCAG-ATGATTATCCTTGAGGTGAGAGAAAAGGACTGAGCCCAA--AG-GAAGCTGGGGAAACGGACTCTTTTGTAAAGATTGGGTGGTTTCCTCTCTCCCTCATCTGAGCTTTTGGCTGCTTGGACTGCTGGCTGCCTCTCT--TCTGGGT-TCCTACTTACCCTGACTTTATCGTCCTCACCTTCATGCCTCTGGGCTTTTTCTGGTGCACAGTGTCCAGTGAG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6981194 540 - 7032639 CCCCAGCTACCAGTCCTACTTCAAGACCATCGAGGAGCTCCAGCAG-AAGGTGAG-GGGGTGGGTG-ACACAGTGCCTCTAGCAGGAAGTTGTCAGGAGAGAATCTGAACTCTGATTGAGAAACA--ATGTGAGCTCT---TGATGTGAATAAAAAGCTGAACA--------CTGGCCTTTT---TATTTTGTTTTCTAGAGGGCCCATCTAATCTTAGGCTTGGGACTGTTAGGTCTAAATATTTGCATAGTGTTAGTCT-AAGTAGAGGTAGCAGCACTTTGCATAA-AAGAGCTGTAATTAAAAATGACCTCTGAATGCTTCCCTGCACTTGCTAAGCTCCAG-ATTATTATCCTTGAGGTGAGAGAAAAGGACTGAGTCCAA--AG-GAAGCCGGGGAAATGGAATCTTTTGTAAAGATTGGGTGGTTTTCTCTCTCCCTCATCTGAGCTTTTGGCTGCTTGGACTGCTGGCTGCCTCTCT--TCTGGGT-TCCTACTTACACTGACTTCATCGTCCTCACCTTCATACCTCTGGGCTTTTTCTGGTGCACAGTGTCCAGTGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35900053 531 - 65901067 TGCCAACTACCAGTCCTACTTCCGGACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGGCTGGGCA-CCAGGCTGCCTTTAGCAGGAAGTTGTAGGAAGAGAATCTGAACTCTG-------------ATATGAGCCCT---TGCTGTGATTGACAGGTTACAGT--------CTGGCCTTTC---CATCTTGTTTTCTTGACGGCCCATCTCATTTCAGACTTGGGACTGTTAGGTCTCAGAATTTGCATAGGGTTAGTCT-AGGCGGC-GTAGCAGCACTTTGCATAA-ATAAGCTGTAATTAAAAGCTGCCTCTGAATGCGTCCATGCATTT-CTAAGCTCCGGAATTATTA-CCCTGAGGTGAGAGAAAAGGACTGAGCTCAGGCAGAGAAGCTGAGGAAATGGGACCTTTAGTAAGGATTGGACCATTTTCTCTCTCCCTCGTCTGAGCTTGTGGCTGCTTGTGATATTGGTGGCCTTCCTCTTCTGAGG-ACCTCATTATCCTGACATCATTGTCCTGATCTTCATGCCTCTGGGCTTCTCCTACTATGCAGTGTCCAGTGAG i micMur3.chr16 C 0 I 502 s otoGar3.GL873537 22798742 497 + 28711273 CGCCAACTACCAGTCCTACTTCCGCACCATCGAGGAGCTCCAGCAG-AAGGTGA--GGGGTGGGCA-CCTTGCTGCCTTTAGTAGG-------CGACAGAG---------------------------TGTGTGCTCT---TGCTGCGACTGAAAGGACAAAGT--------CTGGCCTTTC---CATTTTGTTTTCTCTAGGGCCCGTCTAATTTCAGACTTGGGACTGTTAGGTGTGAGTATTTGCATAATGTGAGTCC-AGGTG---GTAGCCGCATTTTGCATAA-ATAAGCTGTAATTAAAAGTTGCCTCTGAAAGCTTCCATGCACTTGCAGAGCTCTGGAATTATTA-CCCTGAGGTGAGAAAAAAAGATAGAGCTCCAGAAG-GAAGCTGAGGAAAT--GACCTATTGTAAGAACTGGACCATTTTCTCTCTCTCTCTTCTGAGCGTTTGGCTGCTCTGGCTTCCAGCTGCCTTCCTCCTCTGGGGAACCTCATTATCCTGACATCAGTGTGCTGATCATCACACTTCTGGGCTTCTAC-----CGCAGTGTCAG----- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22066695 514 - 122082543 TCCTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAG-AAGGTGAGCGGGACGGGCACCCACAGCATTCCTAGCAGGAAGTTCTCAGGAGAACGTGTGA-----GACACAGAAATG--ACATGAACTCT---TGGCGTGGTGGAAAATTTGATAACCACATTTCCAGCTTTTTAAGCATTTT-TTTTCTTGTGGACTCTTCTATTTGCAGACTGGAGACTGTTAGTTTTGAATCTTGGCAGAA-ATTAGACT-TGGTGGAGGTCATAGGAGTTTAGATAACCCCCACTATTATTAAGAGTGGTCTGTGGGTGTTT-----------CTGAGCTCTGAAAGTATTT-CCTTAAGGAAAGAGAAAAGGACTGAGCCAAAGAAG-GAAGTCATGTAG----------TAGGAAGGACCAGG----TTTTTTTCTCTCTTAACTTGGTATGTTGCTACTCTGACCTCTGGTTGAC---CTCTTTTGGGC-ACCTTACCACTCTGATCTCATTATCTTGACC---------CTGGAATTTCCTTGGTGCACCTTGTACAGTGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21413818 513 + 61074082 TCCCAGCTACCAGTCCTATTTCCGGACCATCGAGGAGCTCCAGCAG-AAGGTGAG-GGGGTGGGCA-CCCCACTGCCTCCAGCAGGAAGTTGTAGGGAGAGAATCTGAGATCTGATTAAGAAACA--GTACAAATTCT---CAGT-----TAAAGAGC--------------CTGGCTTTTC---CATTTT----TCTTGAGTGCCCATTGTGTATGAGGCTCAGGACTGTTACGCCTGAATATTTGCATACTGCTAGTCT-ATGTGCAGGTAGCAGCACTTTGCATAA-ATAAGCTGTAATTAAAAGCTGCCTCCAAATGTTTCCATGCA-TTGCCAAGCTCCAGATTTATTA-CCCTGAGGTAAGAGAAAAGGACTGAGCCCCAGAAA-GAAGCTGAGGAAGCAGAATCTTTTGTAAGAATTGGACAAATTTCTCTGTCTCCCATCTGGACTTTTGACTATTCTGACTTCTTGTTGTCGTT-TCTTCTGGGT-TCCTAATTTACCTGAC--------------CTGGATACCTCTGAACTTCTCTTGGTGTTCAGTGTCTAGTGAG i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 392207 541 - 852752 CCCGGACTACCAGTCCTACTTCCGGACCATCGAGGGGCTGCAGCAG-AAGGTAAG-GGAGTGGGCC-TCACTGCCTCCGCAGCAGACGGTTGTAGGGAAACAATCTGAGATGCGATTAGGAAATAGCACGTGCACTCTGCGTGATGGAAACAGATGGTCGAAGC--------TTGGTCTTCC---CGTTTTGTTTC-TTGACAGTTCATTGTGTTTTATGCCCAGATCTGTTAGGTCTGAAAATTTTCA-----CCAGTCTCCTGTGGCCATAATAGCAGTTTGCCTAA-ATAGACTGTGATCAAAAGCTGCCTCTGAATGCTTCTTTGCATTTACCAACCACT-GAATTATTG-CCCTGAGGTGAGGGAAAATGATGGGACCCAGGAAG-GAAGCTGAGGAAGTGGAAAGTCTTGTAACGATGGGACCAATTCCTCCCTGCCATTTCTGGGCTTTTGGCTGCTCTGATGCC--GCTGCCTTCCTCTTCTGGCT-GTCTAATTAATGTGACTTAATTGTCCTGACCTAGATGCCTTTGGGCTTCCCTTGGCATGTAGTGTTGGGGGAG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=4204150.000000 s hg38.chr17_GL383564v2_alt 90332 404 + 133151 AGCCTAAAATGTTTGGCCCAAATTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAACATGTGGCTTCTTCCCTGATCCAGTCCCCtgcaattgctagtttacctatttgtcttttctgcttgattgaaagtttcttgagggcaggatcaagtgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---GA---TCAGCTTCTCAGTATTGC-TCATTAGGATAG-----AAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCT-TTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTGCT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA s panTro5.chr17 16276914 404 + 83181570 AGCCTAAAATGTTTGGCCAAAATTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAACATGTGGCTTCTTCCCTGATCCAGTCCCCtgcaatttctagtttacctatttgtcttttctgcttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---GA---TCAGCTTCTCAGTATTGC-TCATTAGGATAG-----AAAAAAGA-------TTATCTACTT----AT-ACTGT---T--TGCATATTTTGGT----GTTCT-TTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTGCT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16184358 404 + 83442489 AGCCTAAAATGTTTGGCCAAAATTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAACATGTGGCTTCTTCCCTGATCCAGTCCCCtgcaattgctagtttacctatttgtcttttctgcttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---GA---TCAGCTTCTCAGTATTGC-TCATTAGGATAG-----AAAAAAGA-------TTATCTACTT----AT-ACTGT---T--TGCATATTTTGGT----GTTCT-TTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTGCT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4019396 402 + 4267968 AGCTTAAAATGTTTGGCCAAAATTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAACATGTGGCTTCTTCCCTGATCCAGTCCCCtgcaattgctagtttacctatttgtcttttctgcttgattgaaag-ttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtg-ttttcat-----------------------------------------------------------------------------------aaatgtCAAT-----------------------------------------------TATTAT---GA---TCAGCTTCTCAGTATTGC-TCATTAGGATAG-----AAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCT-TTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTGCT--------------GTATATAGAAAACATTTAA----------TA-----------------AGATAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2001703 404 - 2193130 AGCCTAAAATGTTTGGCCAAAATTGGGAAGATTGGAAATGACCT---AGGACAAAGTAGTCCC-AGTTATCTTGGACA--TCTGGGAACATGTGGCTTCTTCCCTGATCCAGTCCCCtgcaattgctagtttacctatttgtcttttctgcttgattgaaagtttcctgagtgcaggatcaagcacttaccaa--tttttgtatcctcagctcctagtatcatgccggaaacatagtgggtgtttttcat-----------------------------------------------------------------------------------aaatgtCAAC-----------------------------------------------TATTAT---GA---TCAGCTTCTCAGTATTGC-TCATTAGGATAG-----AAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TACATATTTTGGT----GTTCT-TTT--TTTGAATATAATTTTGGAAATATTCATTAAGTACCTGCT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30073192 409 - 77216781 ACCCTAAAACGTTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAGCATGTGGCTTCTTCCCTGATCCAGTCCTCtgcaactgctagtttacctgcttgtcttttccgtttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtagatgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---TATTGTCAGCTTCTCAGTATTGC-TCATTAGGATAG----AAAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGTTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTACT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGG i rheMac8.chr16 C 0 I 11 s macFas5.chr16 27985485 409 - 80997621 ACCCTAAAACGTTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAGCATGTGGCTTCTTCCCTGATCCAGTCCTCtgcaactgctagtttacctgcttgtcttttccgtttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---TATTGTCAGCTTCTCAGTATTGC-TCATTAGGATAG----AAAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGTTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTACT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGG i macFas5.chr16 C 0 I 11 s macNem1.NW_012014910v1 2043198 409 + 10377808 ACCCTAAAACGTTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAGCATGTGGCTTCTTCCCTGATCCAGTCCTCtgcaactgctagtttacctgcttgtcttttccatttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---TATTGTCAGCTTCTCAGTATTGC-TCATTAGGATAG----AAAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGTTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTACT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGG i macNem1.NW_012014910v1 C 0 I 11 s cerAty1.NW_012006043v1 1928143 409 - 8458610 AGCCTAAAACGTTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAGCATGTGGCTTCTTCCCTGATCCAGTCCTCtgcaactgctagtttacctgcttgtcttttccgtttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgtcaac-----------------------------------------------tattat---tATTGTCAGCTTCTCAGTATTGC-TCATTAGGATAG----AAAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGTTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTACT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGG i cerAty1.NW_012006043v1 C 0 I 11 s chlSab2.chr16 64883661 409 + 75148670 AGCCTAAAACATTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAGCATGTGGCTTCCTCCCTGATCCAGCCCTCtgcaactgctagtttacctgcttgtcttttccgtttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgTCAAC-----------------------------------------------TATTAT---TATTGTCAGCTTCTCAGTATTGC-TCATTAGGATAG----AAAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGGTT--TTTGAATATAATTTTGGAAATAGTCATTGAGTACCTACT--------------GTATATAGAAAATATTTAA----------TA-----------------AGATAGG i chlSab2.chr16 C 0 I 11 s manLeu1.NW_012106252v1 2113179 409 + 4244037 AGCCTAAAACGTTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-GGTTGTCTGGGACA--TCTGGGAGCATGTGGCttcttccctgatccagtcctctgcaactgctagtttacttgattgtcttttccatttgattgaaagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgtCAAC-----------------------------------------------TATTAT---TGTTGTCAGCTTCTCGGTATTGC-TCATTAGGATAG----AAAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGTTT--TTTGAATATAATTTTGGAAATATTCATTGAGTACCTACT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGG i manLeu1.NW_012106252v1 C 0 I 11 s colAng1.NW_012122154v1 2135568 408 + 4569836 AGCCTAAAATGTTTGTCCAAAACTGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCTGGGACA--TCTGGGAGCATGTGGCTTCTTCCCTGATCCAGTCCTCtgcaactgctagtttacctgtttgtcttttctgcttgattgacagtttcttgagggcaggatcaagcgcttaccaa--tttttgtatcctcagctcctagtgtcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatatCAAC-----------------------------------------------TATTAT---TATTGTCAGCTTCTCAGTATTGC-TCATTAGGATAG-----AAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGGT----GTTCTGTTT--TTTGAATATAATTTTGGAAGTATTCATTGAGTACCTATT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA i colAng1.NW_012122154v1 C 0 I 11 s calJac3.chr5 46107600 405 - 159171411 AGCCTAAAATGTTTGGCCAAAATAGGGAAGATTGGAAATTACCT---AGGACAAAGTAGTTCC-CATTGTCCGGGACA--TCTGGGAGCATGTGGCCTCTTCCCTGATCCAGCCCCTTGCCATGGCTAgtttacctatttatttattccacttgactgaaagtttcttgaggggaggatcaagcacttactga--tatttttgtcctcagctcctagtat--tgccagacacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgGCAAC-----------------------------------------------TATTAT---TATTATCAGCTTCTCAGTATTGC-TCATTAGGAAAG-----AAAAAAAA-------TTATCTACTT----AT-ACTTT---T--TGCATATTTTGAT----GTTCT-TTT--TCCAAATATGATTTTGGAAATAGTCATTGAGTACCTATT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA i calJac3.chr5 C 0 I 11 s saiBol1.JH378271 1817863 407 + 3513951 AGCCTAAAATGTTTGGCCAAAATCAGGAAGATTGGAAATTACCT---AGGACAAAGTAGTCCC-AGCTGTCTGGGACA--TCTGGGAGCAGGTGGCTTCTTCCCTGATCCAGCCCGttgcacttgctagtttacctatttatctattccacttgattgaaggtttcttgagggcaggatcaagcacttagcga--aatttgtgtcctcagctcctactatcatgccagaaacatagtaggtgtttttcat-----------------------------------------------------------------------------------aaatgtCAAC-----------------------------------------------TATTAT---TATTATCAGCTTCTCAGTATTGC-TCATGAGGAAAG-----AAAAAAGA-------TTATCTACTT----AT-ACTTT---T--TGCAAACTTTGAT----GTTCT-TTT--TCCAAATATAATTTTGGAAATAGTCATTGAGTACCTATT--------------GTATATGGAAAGCATTTAA----------TA-----------------AGATAGA i saiBol1.JH378271 C 0 I 11 s aotNan1.NW_018502359v1 6981734 401 - 7032639 AGCCTAAAATATTTGGCCAAAATCGGGAAGGTTGGAAATTACCT---AGGACAAAGTAGTCCC-AGTTGTCCGGGACA--TTTGGGAGCATGTGGCTTCTTCCCTGATCCAGCCCCttgcaattgctagtttacctatttatctattccacttgactgaaagtttcttgagggcaggatcaagcacttaccga--tatttgtgtcctcagctcctagtatcatgccagaaacatagtaggcgtttttcat-----------------------------------------------------------------------------------aaatgtCAAC--------------------------------------------------------TATTATCAGCTTTTCAGTATCGC-TCATTAGGAAAG-----AAAAAAGA-------TTATCTGCTT----AT-ACTTT---T--TGCATATTTTGAT----GTTCT-TTT--TCCAAATATAATTTTGGAAATAGTCATTGAGTACCTATT--------------GTATATAGAAAGCATTTAA----------TA-----------------AGATAGA i aotNan1.NW_018502359v1 C 0 I 1852 s otoGar3.GL873537 22799239 411 + 28711273 GGCTGAAAACATTTGGCTAAAACCAGAAAGATTGAAATCTACCTAGAAGGATAGAGCA--CCA-AGCCATGTGGGATA--TCTGGGACAGCGTGGCA-CTTCCCTGACCCTGTCCTCTGCAATTTCTAGTTTACATATTTATTTTCCCCATTTGAT----ATTTTCCC---------------CACTCA-------GTTtatacccttggctcctagaaccatgccaggcacatagcaggtgtttttcgt-----------------------------------------------------------------------------------aaatctttat-----------------------------------------------tATTATGCGTATCATCAGATTCTCAGTATTGC-TTGCTAGGAAAG-----AAACAAGA-------TTATCTACTT----GT-ACTTTT-CT--TGCATATTTTCGT-----TCCT-TTT--TTCCAACTGAATTTCTCAAGTATTCATTGAGCACCTGTTGTACTGTTGTCCTGGTACACAGACAATATTTAATAGCCTTACGTA-----------------AGTTACG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22067209 403 - 122082543 GAATAAGAGTATTTCACTAAAACCAGAAATATTAGACACTAAAT---AG----AAATGGTCCCAAGCCATCCAGGATGGCCCTGAGAACAGG-AACAACCTCCATTGCCTCTGCCCCTGT-GTTTCTGCTTTATGTATTCATCTTGCCAACTTGACTGAAAGTTTGTTAAAGT----------------GCAA--TATTTTT----TTAACTTTTAGAGCCTTTCTAACCAAACACCAGTTGTTTTAAAC-----------------------------------------------------------------------------------AAATACAAAT-----------------------------------------------TGTTTT---TA---TCAGTTTATTAATATTCC-TTATTAAGAAAGGAGAAAAATAAGA-------TCATCTGCTG----ATAAATTT---T--TGTTTATTTGCAT----GT-CT-GCC--TCCAGATTTAGTCCCTCAAGTATTTTTTGAGCATTTATT--------------GTATATGAATAGCATGTAA----------TAGACACACAATATGCTGTAATTAAA i mm10.chr11 C 0 I 4 s canFam3.chr9 21414332 542 + 61074082 GCATAAAAATGGTTGACAAAAATCAGAAAGAGTAGAAACCACAT---AGGAGGAAATGGTACCAAGCCACCCAGGATG--GCTAGGAAGGCATGGCTGCTTCCCTGACCCAG-CCCCTCCAAAAGCCAG-ttacatatttatcttcctccctggactagaagtttcttgaggg-------gagcatttactcatttttttgtatcttcagctcctagaaccaggccagatttatggtagTTCTGTTTTGTTTTGTTTTTAGGGAGAAAGAGTGAGCATGTGTAGGCTAGCAGGGCTGGGgggcggtggtgaggcagagggagagggagagagagaatcttaagcaaggtccatgctcagtgcggagcTATGGTAGGGTTTTAAAAATAGATGTTAT---TATTATCAGCCTTTTAGTATTGC-TTATTAGGAAAG------AAAAAGA-------TTATGTATTTCCTGAT-ACTTTTGGT--TGCACATTTCAGT----ATTCT-TTTTATCCAAATTTGATTTTTCAAATATTTATTGAGTAC--ATT--------------TTGCATAGATAGCATTTAA----------TAATCTC------------ATATAAG i canFam3.chr9 I 1 I 16 s dasNov3.JH570468 392748 419 - 852752 GGCAAAAATTGGTTGGTAAAA--CAGAAAGAGTGGAAACTCCGT---AGGAGGAACTAGTTCTAAGCCATCCAGGATG--GC-GGGAGCACTTGGCTGCTTCCCTGGTCCAATTCt-tataattgctgctttacgggtttctcttctccacttgactggatgtttcttgagggcaggatccagttcctattca--cttttgtgtcctctgctcctagcaccatgcctggcacacagtaggagtttttaag-----------------------------------------------------------------------------------a-----taaa-----------------------------------------------tgttAT---TA---TCGGCTGCTCAGCATAGCTTCATTAAGAAAG-----AAAAAGGAAGATTAGTTATCTGCTG----AT-AATTT---TCATGTGTATTTCTATGACAGTTCT-TTT--TCAAAAT-TGGTTTTTCAAATATTTATTAAGCAACTATT--------------GCAAATGAATAGCACTTAATTATCTTATATA-----------------AGATATA i dasNov3.JH570468 C 0 I 11 e micMur3.chr16 35900584 502 - 65901067 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=13073.000000 s hg38.chr17_GL383564v2_alt 90736 1 + 133151 C s panTro5.chr17 16277318 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16184762 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4019798 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002107 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30073612 1 - 77216781 C i rheMac8.chr16 I 11 C 0 s macFas5.chr16 27985905 1 - 80997621 C i macFas5.chr16 I 11 C 0 s macNem1.NW_012014910v1 2043618 1 + 10377808 C i macNem1.NW_012014910v1 I 11 C 0 s cerAty1.NW_012006043v1 1928563 1 - 8458610 C i cerAty1.NW_012006043v1 I 11 C 0 s chlSab2.chr16 64884081 1 + 75148670 C i chlSab2.chr16 I 11 C 0 s manLeu1.NW_012106252v1 2113599 1 + 4244037 C i manLeu1.NW_012106252v1 I 11 C 0 s colAng1.NW_012122154v1 2135987 1 + 4569836 C i colAng1.NW_012122154v1 I 11 C 0 s calJac3.chr5 46108016 1 - 159171411 C i calJac3.chr5 I 11 C 0 s saiBol1.JH378271 1818281 1 + 3513951 C i saiBol1.JH378271 I 11 C 0 s otoGar3.GL873537 22799650 1 + 28711273 C i otoGar3.GL873537 C 0 I 9 s mm10.chr11 22067616 1 - 122082543 T i mm10.chr11 I 4 C 0 s canFam3.chr9 21414890 1 + 61074082 C i canFam3.chr9 I 16 C 0 s dasNov3.JH570468 393178 1 - 852752 C i dasNov3.JH570468 I 11 C 0 e micMur3.chr16 35900584 502 - 65901067 I e aotNan1.NW_018502359v1 6982135 1852 - 7032639 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=477944.000000 s hg38.chr17_GL383564v2_alt 90737 41 + 133151 ATCCTGATCCTTCCAAGGAAGTGAATTAGGAAGGACTGCCA s panTro5.chr17 16277319 41 + 83181570 ATCCTGATCCTTCCAAGGAAGTGAATTAGGAAGGACTGCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16184763 41 + 83442489 ATCCTGATCCTTCCAAGGAAGTGAATTAGGAAGGACTGCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4019799 41 + 4267968 ATCCTGATCCTTCCAAGGAAGTGAATTAGGAAGGACTGCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002108 41 - 2193130 ATCCTGATCCTTCCAAGGAAGTGAATTAGGAAGGACTGCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30073613 41 - 77216781 ATCCTGATCCTTCCAAGGACGTGAATTAGGAAGGACTGCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27985906 41 - 80997621 ATCCTGATCCTTCCAAGGACGTGAATTAGGAAGGACTGCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2043619 41 + 10377808 ATCCTGATCCTTCCAAGGACGTGAATTAGGAAGGACTTCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1928564 41 - 8458610 ATCCTGATCCTTCCAAGGACGTGAATTAGGAAGGACTGCTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884082 41 + 75148670 ATCCTGATCCTTCCAAGGACGTGAATTAGGAAGGACTGCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2113600 41 + 4244037 ATCCTGATCCTTCCAAGGACGTGAATTAGGAAGGACTGCTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2135988 41 + 4569836 ATCCTGATCCTTCCAAGGAAGTGAATTAGGAAGGACTTCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108017 41 - 159171411 ATCGTGATCCTTCCAAGGAAGTGAATTAGTAAGGACTGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1818282 41 + 3513951 ATCCTGATCCTTCCAAGGAAGTGAATTAGTAAGGACTGCCA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6983987 41 - 7032639 ATCCTGACCCTTCCAAGGAAGTGAATTAGTAAGGACTGCCA i aotNan1.NW_018502359v1 I 1852 C 0 s otoGar3.GL873537 22799660 41 + 28711273 ATCCTGATCCTACCAAACAAGCACATTAGTAGGGACTGTTG i otoGar3.GL873537 I 9 C 0 s mm10.chr11 22067617 40 - 122082543 ATTCTGATGTTTCCATATAAACAAATTAAGAGGATTTCTC- i mm10.chr11 C 0 C 0 s canFam3.chr9 21414891 41 + 61074082 ATTCTGTTCCTTCCAGGTAAGAAAATTAGTAGGAATTGCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 393179 41 - 852752 ACTCTGATCCTTCTATTAAAGCAGATTAGTAGGGCTTGCTG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35900584 502 - 65901067 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=2294395.000000 s hg38.chr17_GL383564v2_alt 90778 150 + 133151 TTGGTGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCTAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGATGACTTCAGGACCAAGTGAGTGGGCAAG s panTro5.chr17 16277360 150 + 83181570 TTGGTGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCTAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGATGACTTCAGGACCAAGTGAGTGGGCAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16184804 150 + 83442489 TTGGTGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCTAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGATGACTTCAGGACCAAGTGAGTGGGCAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4019840 150 + 4267968 TTGGTGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCTAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGATGACTTCAGGACCAAGTGAGTGGGCAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002149 150 - 2193130 TTGGTGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCTAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGATGACTTCAGAACCAAGTGAGTGGGCAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30073654 150 - 77216781 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCTTTCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27985947 150 - 80997621 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCTTTCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2043660 150 + 10377808 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCTTTCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1928605 150 - 8458610 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCCAGATCCTGTGCAGCAAGTCTGAGAATGCTAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884123 150 + 75148670 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCCTCCGACGACTTCAGGACCAAGTGAGTGGGCAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2113641 150 + 4244037 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCCAGATCCTGTGCAGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAACGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136029 150 + 4569836 TTGGCGAAAAATTACCA---AGTCCTTGCTCATTCTTGAATGTTTTGGGCCTTCCAGATCCTGTGTGGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108058 150 - 159171411 TTGGTGAAAAATGACGA---GGTCCTTGCTCATTCTTGAATGTTTTGGGTCTTCTAGATCCTGTGTGGCAAGTCTGAGAATGCCAGGCTTCTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1818323 150 + 3513951 TTGGTGAAAAATGACGA---GGTCCTTGCTCATTCTTGAACGTTTTGGGTCTTCTAGATCCTGTGCGGCAAGTCTGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAGG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6984028 150 - 7032639 TTGGTGAAAAATGATGA---GGTCCTTGCTCATTCTTGAACGTTTTGGGTCTTCTAGATCCTGTGTGGCAAGTCTGAGAATGCCAGGCTTGTGGTGCAGATCGACAATGCCAAGCTGGCCTCAGACGACTTCAGGACCAAGTGAGTGGGCAAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35901086 150 - 65901067 TTGGTGAGAAATAACCA---AGTCCTTGCTCACTCTGGAGTGTTTTGGGTCTTCTAGATCCTGTGCAGCAAGTCCGAGAACGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCCTCCGACGACTTCAGGACCAAGTGAGTGAGCAAG i micMur3.chr16 I 502 I 397 s otoGar3.GL873537 22799701 153 + 28711273 TTGGTGGAAAATAACCCAGTAGTCCTCACTCATTCGAGAATGTTTTGGGTCTTCTAGATCCTGTGCAGCAAGTCGGAGAACGCCAGGCTGGTGGTACAGATTGACAATGCCAAGCTGGCTTCAGATGATTTCAGGACCAAGTGCGTGAGCAAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22067657 149 - 122082543 TTGAT-AAAAAGAGCCA---CCCTCCTGCTCATTATACAATGTTTTTGGATCTCTAGATCTTGTGTGGCAAATCTGAGAACGCCAGGCTGGTCGTGCAGATCGACAATGCCAAGCTGGCTTCTGATGACTTCAGGACCAAGTGAGTGGGTGGA i mm10.chr11 C 0 I 4 s canFam3.chr9 21414932 142 + 61074082 TTGGTTAAAAGTAACCA---A------GCTCATTCCAGATCGTTTTGGG--TTCTAGATCTTGTGTAACAAGTCAGAGAATGCCAGGCTGGTGGTGCAGATCGACAATGCCAAGTTGGCCTCAGATGACTTCAGGACCAAGTGAGTGGGCAAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 393220 150 - 852752 TTGGCTAAAAATGACAA---AGCCCTTGCTCATTCTAGAACGTTTTGGGTCTTCCAGATCCTGACCAACAAGGCCGAGAACGCCAGGCTGGTGGTGCAGATCGATAATGCCAAGTTGGCCACAGACGACTTCAGAACCAAGTGAGTGGCCACG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=3512080.000000 s hg38.chr17_GL383564v2_alt 90928 351 + 133151 CGGGGTGTTGCTGTTTATTTCTCTTCTCTGGCA--GCCCTCCTTT-CCTTTAGCCTGTTGTCAACACAAGTTAAACAAACAGTGACTGAGCTATGTTCTAGCTGCTTTCTCCAAGATTCACAGAGCCACCACACACCGTAGCTCAGAGATCCTTTCCCCAGGCCTTAGACTTCCT-TTCCTC--CTTCTTCTCCTCTGTGACGTGACAC-CCCTAG-TCGT-----------------ACTGTGAGTTAGTG--TAGACGTGTTG----------G-CCCCCG-----ATGTTCTCCTATGCACAGAACCCATTCATGAGAATGGAGAATGT-GGAAGCATATT-ATTTTGGAAGTCTTACAGTTTGTCAGCTTTTATC---CTAAATCCACTGGC---ttt s panTro5.chr17 16277510 351 + 83181570 CGGGGTGTTGCTGTTTATTTCTCTTCTCTGGCA--GCCCTCCTTT-CCTTTAGCCTGTTGTCAACACAAGTTAAACAAACAGTGACTGAGCTATGTTCTAGCTGCTTTCTCCAAGATTCACAGAGCCACCACACACCATAGCTCAGAGATCCTTTCCCCAGGCCTTAGACTTCCT-TTCCTC--CTTCTTCTCCTCTGTGAAGTGACAC-CCCTAG-TTGT-----------------ACTGTGAGTTAGTG--TAGACGTGTTG----------G-CCCCTG-----GTGTTCTCCTATGCACAGAACCCATTCATGAGAATGGCGAATGT-GGAAGTGTATT-ATTTTGGAAATCTTACAGTTTGTCGGCTTTTATC---CTAAATCCACTGGC---ttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16184954 351 + 83442489 CGGGGTGTTGCTGTTTATTTCTCTTCTCTGGCA--GCCCTCCTTT-CCTTTAGCCTGTTGTCAACACAAGTTAAACAAACAGTGACTGAGCTATGTTCTAGCTGCTTTCTCCAAGATTCACAGAGCCACCACACACCGTAGCTCAGAGATCCTTTCCCCAGGCCTTAGACTTCCT-TTCCTC--CTTCTTCTCCTCTGTGAAGTGACAC-CCCTAG-TTGT-----------------ACTGTGAGTTAGTG--TAGATGTGTTG----------G-CCCCTG-----ATGTTCTCCTATGCATAGAACCCATTCATGAGAATGGCGAATGT-GGAAGTGTATT-ATTTTGGAAATCTTACAGTTTGTCGGCTTTTATC---CTAAATCCACTGGC---ttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4019990 346 + 4267968 CGGGGTGTTGCTGTTTATTTCTCTTCTCTGGCA--GCCCTCCTTT--CTTTAGCCTGTTGTCAACACAAGTTAAACAAACAGTGACTGAGCTATGTTCTAGCTGCTTTCTCCAAGATTCACAGAGCCACCACACACCGTAGCTCAGAGATCCTTTCCCCAGGCCTTAGACTTCCT-TTCCTC--CTTCTT---CTCTGTGACGTGACAC-CCCTAG-TCGT-----------------ACTGTGAGTTAGTG--TAGACGTGTTG----------G-CCCC-G-----ATGTTCTCCTATGCACAGAACCCATTCATGAGAATGGAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAGTTTGTCGGCTTTTATC---CTAAATCCACTGGC---ttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002299 351 - 2193130 TGGGGTGTTGCTGTTTGTTTCTCTTCTCTGGCT--GCCGTCCTTC-CCTTTAGCCTGTTGTCAACACAAGTTAAACAAACACTGACTGAGCTATGTTCTAGCTGCTTTCCCCAAGAATCACAGAGCCACCACACACCGTAGCTCAGAGATCCTTTCCCCAGGCCTTAGACTTCCT-TTCCTC--CTTCTTCTCCTCTGTGAAGTGACAC-CCCTAG-TCGT-----------------ACTGTGAGTCACTG--TAGACGTGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAACCCGTTCATGAGAATGGAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAGTTTGTTGGCTTTTATT---CGAAATCCACTGGC---ttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30073804 351 - 77216781 CGGGGTGTTGCTGTTTGTTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTATTGTCAACACAAGTTAAACAAGCACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTAGTTCAGAGATCCTTTCTCCAGGCCTTAGACTTCCT-TTCCTC--CTGCTTCTCGTCTGTGAAGTGACAT-CCCTAG-TCGT-----------------ACTGTGGGTCAGTG--TAGACATGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTTATC---CTAAATCCACTGGC---ttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27986097 351 - 80997621 CGGGGTGCTGCTGTTTGTTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTATTGTCAACACAAGTTAAACAAGCACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTAGTTCAGAGATCCTTTCTCCAGGCCTTAGACTTCCT-TTCCTC--CTGCTTCTCGTCTGTGAAGTGACAT-CCCTAG-TCGT-----------------ACTGTGGGTCAGTG--TAGACATGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTTATC---CTAAATCCACTGGC---ttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2043810 351 + 10377808 CGGGGTGTTGCTGTTTGTTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTATTGTCAACACAAGTTAAACAAGCACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTAGTTCAGAGATCCTTTCTCCAGGCCTTAGACTTCCT-TTCCTC--CTGCTTCTCCTCTGTGAAGTGACAT-CCCTAG-TCGT-----------------ACTGTGGGTCAGTG--TAGACATGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTTATC---CTAAATCCACTGGC---ttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1928755 350 - 8458610 CGGGGTGTTGCTGTTTATTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTATTGTCAACACAAGTTAAACAAACACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTAGTTCAGAGAT-CTTTCTCCAGGCCTTAGACTTCCT-TTCTTC--CTGCTTCTCCTCTGTGAAGTGACAT-CCCTAG-TTGT-----------------ACTGTGGGTCAGTG--TAGACATGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTTATC---CTAAATCCACTGGC---ttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884273 351 + 75148670 CGGGGTGTTACTGTTTATTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTATTGTCAACACAAGTTAAACAAACACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTAGTTCAGAGATCCTTTCTCCAGGCCTTAGACTTCCT-TTCCTC--CTGCTTCTCCTCTGTGAAGTGACAT-CCCTAG-TCGT-----------------ACTGTGGGTCAGTG--TAGACATGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTTATC---CTAAATCCACTGGC---ttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2113791 351 + 4244037 CGGGGTGTTGCTGTTTATTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTATTGTCAACACAAGTTAAACAAACACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTGGTTCAGAGATCCTTTCTCCAGGCCTTAGACTTCCT-TTCCTC--CTACTTCTCCTCTGTGAAGTGACAT-CCCTAG-TCGT-----------------ACTGTGGGTCAGTG--TAGACATGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GGAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTTATC---CTAAATCCAtttgc---ttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136179 351 + 4569836 CGGGGTGTTGCTGTTTATTTTTCTTCTCTGGCT--GCTCTCCTTC-CCTTTAGCCTGTTGTCAACACAAGTTAAACAAACACTGACTGAGCTATGTTCTAGATGCTTTGCCCAAGATTCACAGAGCCACTGCACACCGTAGTTCAGAGATCCTTTCTCCAGGCCTTAGACTTCCT-TTCCTC--CTGCTTCTCCTCTGTGAAGTGACAT-CCCTAG-TCGT-----------------ACTGTGGGTCAGTG--TAGACGTGTTG----------G-CCCCTG-----ATGTTCTCCTATGCACAGAATCCATTCATGAGAATGAAGAATGT-GAAAGTATATT-ATTTTGGAAATCTTACAATTTATTGGCTTTCATC---CTAAATCCACCGGC---ttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108208 350 - 159171411 CGGGGTGTTCCTGTTTATTCCTCGTCTCTGGCT--GTTCTCCTTC-CCTTTAGCCTGTTGTCAACACAAGCTAAACACACATTGACTGAGCTATGTTCTATATGCTTTCCCCAAGATTCACAGAGCCACTGCACACCGTAGCT--GAGGTCCTTTCCCCAGGCTTTAGACTGCCT-TCACTC--CTGCTTCTCCTCTGTAAAGTGGCAT-CCCCAG-TCAT-----------------ACTGTGAGTCAGTA--TAGACATCCTG----------G-TCCCTG-----ATGTTCTCCTATGCACAGAACCCATTCATGAGAATACAGAATGTGGGAAGTATATT-ATTCGGGAAATCTTAGAGTTTATCAGCTTTTATC---CTAAATCCACTGGC---ttc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1818473 353 + 3513951 CGGGCTGTTGCTCTTTATTCCTCTTCTCTGGCT--GTTCTCCTTC-CCTTTAGCCTGTTGTCAACACAAGCTAAACACACATTGACTGAGCTATGTTCTAGATGCTTTCCCCAAGATTCACAGAGCCACTGCACACCGTAGCT--GAGAGCCTTTCCCCAGGCTCTAGACTGCCT-TCACCT--CTGCTTCTCCTCCGTAGAGTGGCAG-CCCCAG-TCAT-----------------ACTGTGAGTCAGTG--TAGACATCCTG----------G-TCCCTG-----ATGTTCTCCTATGCACAGAACCCATTCATGAGAATACAGAATGTGGGAAGCATATT-ATTTTGGAAATCTTAGAGTTTATCAGCTTTTATC---CTAAATCCACTGGCtttttt i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6984178 340 - 7032639 CAGGGTGTTGCTGTTTATTCCTCTTCTCTGGCT--GTTCTCCTTC-CCTTTAGCCTGTTGTCAACACA----------ACATTGACTGAGCTATGTTCTAGATGCTTTCCCCAAGATTCACAGAGCCACTGCGCACCGTAGCT--GAGATCCTTTCCCCAGGCTTTAGACTGCCT-TCACTC--CTGCTTCTCCTCTGTAAACTGGCAT-CCCCAG-TCAT-----------------ACTGTGAGTCAGTG--TAGACATCCTG----------G-TCCCTG-----ATGTTCTCCTATGCACAGAACCCATTCATGAGAATACAGAATGTGGGAAGTATATT-ATTTTGAAAATCTTAGAGTTTATCAGCTTTTATC---CTAAATCCACTGGC---ttt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22799854 337 + 28711273 GGGGGTGTTGTTGCAAACCTGTCTCCCCT---------CTCCTTCTCCTTTAGCCGATTG-----ACAATCCTGACATACAATGACCGAGTGTTTTCCAAGACACTTTCCCCAAGCCCCACAGAGCCGCTGTACATCAGCTCTCAGGGCTCCCTTCTCCAGGCCTCAGGCCGCTC-CTCCTT--CTGCTTCTCCTCTGTAAAGTGACATCCCCCAA-TCAC-----------------ATTGTGAGTCAATG--TGGATGTCTTG----------G-CCCTTA-----ATGTCCTACTGTGCACAGAGCTCAATCATGAGATT-----ATG--GGAAATGTATTCATTTCAGAAATCTCACAGTTTAAGGACTTTAGCC--TCTAAATCCACTGGT---TCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22067810 282 - 122082543 TGGGGCGTTATTGCTTGTCTCTACCTCC---CT--TTTCTCTCTT-CCCTTTTTCTGTTGTTCACACAGGC--------------CTGTGT--TGATCCAGA---TTTCCCCTAG------------------------------GAG----TTTCTCCAAGATCTACACTCCCTCCTCTTC--CCTCTTCCCTTTTGTAGAATGGCAT-CTCTAG-CCCTAACCTCAACTCCACCAAACTGTATGTCTGTGACTAG----------------------CCTA-----GTCTTCTACTGTGTGCAGGACTCAGTCATAAGAATG-----TGT-GAGGTTCTTTC-CTTCTGGAAGCCTCGAAGTTTACAAGCTCTTATC----------------------- i mm10.chr11 I 4 C 0 s canFam3.chr9 21415074 332 + 61074082 TGGGGTG--------------TCCTCTCT--CT--TCTTTCTTTC-CCTTTAGTGTGTCCTCAACAC----TGACAAAACATTGAAAAAGCTTTTCCTTAGATTTTTCCCCCAGGATCCACAGAGTCACTGCTCAGTAGAGCTCAGAGATCTCTTCTCCAGA-TTCAGACCCCTC-CTCCTCTACTGCTGCTTCTCTGTAAGATGAGAT-CCCCAA----------------------ACT-------AGTG--TAGAAGTCATGCCCCACTCCCA-CCCCCACCACCGTGCTCTGCTATGCACATAATGCAGTCAGGTGAATG-----TG--AGAAGTTTATTAATTTTGGAAATCTCACAGTTTATGGACTTTTATT-CTCTAAATCTACTGGT---TC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 393370 320 - 852752 CGGTGCATGGCTGCTCATCCGTCTTGTCTTGCTCCTCTCTCCTTC-CCTTTAGCCTGTGCTCAACAC-----TGACAAACACTGACAGAGCTTTTTCCCAGAGGGTTTCCCCAAGCTCCACCAAGCCATTGCA----------------------CCCCAGGCCTTAGA-------CTCCTC--CTGGTGCTCCCCTCTAAAGCCACAT-CCCTGGAGCAC-----------------ACTGAGAGCTGGTG--GGGACCTCATG----------GTTCCCCC-----ATGCTCTTCTATGCAAAGAATTCAATCACAAGGATG-----TG--GGAAGCATATTAATTTTGGGAACTTCACAACTGATGGGCGTTTATCACCTTAATGCCACCGCC---TCT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35901236 397 - 65901067 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=-13149.000000 s hg38.chr17_GL383564v2_alt 91279 7 + 133151 c----ttc------------ttt s panTro5.chr17 16277861 11 + 83181570 cttttttc------------ttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16185305 11 + 83442489 cttttttc------------ttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4020336 10 + 4267968 c-tttttc------------ttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002650 12 - 2193130 cttttctc-----------tttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30074155 19 - 77216781 cttttttc----tttttgttttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27986448 18 - 80997621 cttttttc----tttttg-tttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2044161 18 + 10377808 cttttttc----tttttg-tttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1929105 15 - 8458610 cttttttc----ttt----tttc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884624 19 + 75148670 ctttttccttttttt----tttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2114142 15 + 4244037 cttttttc----ttt----tttc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136530 14 + 4569836 cttgtttc----tt-----tttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108558 10 - 159171411 cttttttc-------------tt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1818826 10 + 3513951 ctcttttt-------------tt i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6984518 10 - 7032639 cttttttc-------------tt i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21415406 7 + 61074082 CTTATTT---------------- i canFam3.chr9 C 0 I 10 s dasNov3.JH570468 393690 7 - 852752 -GTATTTA--------------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22068092 0 - 122082543 C e micMur3.chr16 35901236 397 - 65901067 I e otoGar3.GL873537 22800191 0 + 28711273 C e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=1084571.000000 s hg38.chr17_GL383564v2_alt 91286 134 + 133151 tttttagagacagggccttgctctgtcacccaggctggagggcagtggtgcaatcatagctcagtgtaacttcagatcctcagactcctgggctcaagcaaccctct-ccccttagcctcctgaatagctaggaa s panTro5.chr17 16277872 133 + 83181570 tttttagagacagggccttgctctgtcacccaggctggagggtagtggtgcaatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctc--ccccttagcctcctgagtagctaggaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16185316 133 + 83442489 tttttagagacagggccttgctctgtcacccaggctggagggtagtggtgcaatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctc--ccccttagcctcctgagtagctaggaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4020346 134 + 4267968 tttttagagacagggccttgctctgtcacccaggctggagggcagtggtgcaatcatagctcagtgtaacttcagatcctcagattcctgggctcaagcaatcctct-ccccttagcctcctgagtatctaggaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002662 135 - 2193130 tttttagagacagggccttgctctgtcacccaggctggagggcagtggtgcaatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctctcccccttagcctcctgagtagctaggaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30074174 134 - 77216781 tttttagagacaggcccttgctctgttacccaggctggaggacagtggtgcgatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctcc-caccttagcctcctgagtagctaggaA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27986466 134 - 80997621 tttttagagacaggcccttactctgttacccaggctggaggacagtggtgcgatcatagctcagtgtagcctcagatcctcagattcctgggctcaagcaatcctcc-caccttagcctcctgagtagctaggaA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2044179 134 + 10377808 tttttagagacaggcccttgctctgttacccaggctggaggacagtggtgcgatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctcc-caccttagcctcctgagtagctaggaA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1929120 134 - 8458610 tttttagagacaggcccttgctctgttacccaggctggaggacagtggtgcaatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctcc-caccttagcctcctgagtagctaggaA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884643 134 + 75148670 tttttagagacaggcccttgctctgttacccaggctggaggacagtggtgcaatcgtagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctcc-taccttagtctcctgagtagctaggaA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2114157 134 + 4244037 tttttagagacaggcccttgctctgttacctaggctggaggacagtggtgcaatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcttcc-caccttagcctcctgagtagctaggaA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136544 134 + 4569836 tttttggagacaggcacttgctctgttacccaggctggaggacagtggtgcgatcatagctcagtgtaacctcagatcctcagattcctgggctcaagcaatcctcc-caccttagcctcctgagtagctaggaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108568 134 - 159171411 tttttagagacagggtctttctctgtcacccaggctggagggcactggtgcaatcagatctcactgtaacttcagatcctcagattcctgggctctatcaattctcc-caccttagcctcctgagtagctaggag i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1818836 134 + 3513951 tttttagagacagggtctttctctgtcacccaggctggagggcactggtacaatcagagctccctgtaacttcagatccttagattcctgggctcaagcaatcctcc-ctccttagcctcctgagtagctgggaa i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6984528 134 - 7032639 tttttagagacagggtctttctctgtcacccaggctggagggcactggtgcaatcagacctcactgtaacttcagatcctcagattcctgggctcaagcaatcctcc-cactttagcctcctgagtagctaggaa i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22068092 25 - 122082543 ----------------------------------------------------------------------------TCCTCAGATTCCCTGTCTTTGTGAA---------------------------------- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 393697 35 - 852752 TCTTGAAAAA--------------------------------------------------TTAGTGCCTTTTTGGA-------ACTCCTTGG------------------------------------------- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35901236 397 - 65901067 I e canFam3.chr9 21415413 10 + 61074082 I e otoGar3.GL873537 22800191 0 + 28711273 C e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=262467.000000 s hg38.chr17_GL383564v2_alt 91420 34 + 133151 tatagAAGTCTATCCACTGGATCTTTAAACGTAA s panTro5.chr17 16278005 34 + 83181570 tatagAAGTCTATCCACTGGATCTTTAAACATAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16185449 34 + 83442489 tatagAAGTCTATCCACTGGATCTTTAAACATAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4020480 34 + 4267968 tatagAAGTCTATCCACTGGATCTTTAAACATAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002797 34 - 2193130 tatagAAGTCTATCCACTGGATCTTTAAACATAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30074308 34 - 77216781 TGTAGAAGTCTATTCACTGGATCTTTAAACATAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27986600 34 - 80997621 TGTAGAAGTCTATTCACTGGATCTTTAAACATAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2044313 34 + 10377808 TGTAGAAGTCTATTCACTGGATCTTTAAACATAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1929254 34 - 8458610 TGTAGAAGTCTATCCACTGGATCTTTAAACATAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884777 34 + 75148670 TGTAGAAGTCTATCCACTGGATCTTTAAACATAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2114291 34 + 4244037 TGTAGAAGTCTATCCACTGGATCTTTAAACATAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136678 34 + 4569836 tatagAAGTCTATCCACTGGATCTTTAAACATAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108702 34 - 159171411 tacaggAGTCTGTCCACTGGATCTTTAAAAATAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1818970 34 + 3513951 tacaggAGTCTGTCCGCTGGATCTTTAAAAATAA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6984662 34 - 7032639 tacaggAGTCTGTCCACTGGATCTTTAAAAATAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22800191 8 + 28711273 -----------------------TATAAA---AA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22068117 14 - 122082543 -------------------AATAATT-AACATAC i mm10.chr11 C 0 C 0 s dasNov3.JH570468 393732 5 - 852752 ----------TATTC------------------- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35901236 397 - 65901067 I e canFam3.chr9 21415413 10 + 61074082 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=246326.000000 s hg38.chr17_GL383564v2_alt 91454 23 + 133151 AATTACCAGTGCATTTTCTTCCA s panTro5.chr17 16278039 23 + 83181570 AATTACCAGTGCATTTTCTTCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16185483 23 + 83442489 AATTACCAGTGCATTTTCTTCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4020514 23 + 4267968 AATTACCAGTGCATTTTCTTCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002831 23 - 2193130 AATTACCAGTGCATTTTCTTCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30074342 23 - 77216781 AATTACCAGTGCGTTTTCTTCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27986634 23 - 80997621 AATTACCAGTGCGTTTTCTTCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2044347 23 + 10377808 AATTACCAGTGCGTTTTCTTCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1929288 23 - 8458610 AATTACCAGTGCGTTTTCTTCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884811 23 + 75148670 AATTACCAGTGCGTTTTCTTCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2114325 23 + 4244037 AATTACCAGTGCGTTTTCTTCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136712 23 + 4569836 AATTACCAGTGTGTTTTCTTCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108736 23 - 159171411 AATTACCAGTGCCTTTTCCTCCA i calJac3.chr5 C 0 I 9 s saiBol1.JH378271 1819004 23 + 3513951 AATGACCAGTGCCTTTTCCTCCA i saiBol1.JH378271 C 0 I 9 s aotNan1.NW_018502359v1 6984696 23 - 7032639 AATTACCAGTGCCTTTTCCTCCA i aotNan1.NW_018502359v1 C 0 I 9 s otoGar3.GL873537 22800199 23 + 28711273 AATTACCAGTTAGTTTTCCTCCA i otoGar3.GL873537 C 0 I 9 s mm10.chr11 22068131 21 - 122082543 ACTTCCCTGAGGGACCTACTT-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21415423 23 + 61074082 AATTACCAGAGCATTTTCCTCTA i canFam3.chr9 I 10 I 9 e micMur3.chr16 35901236 397 - 65901067 I e dasNov3.JH570468 393737 0 - 852752 C e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=7099021.000000 s hg38.chr17_GL383564v2_alt 91477 503 + 133151 GCTCGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTCCTAGTTGCCTGACTAACCAAAC-CAAAGCAGAGTCAAGGCCAGGCCTATTCCTGCCCAGCCTGTTCCTGACCCTCCTGTGATCACAGATATGAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTAGCCAGGACCTGTTTCACAACTGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCTGAGGAAGTAATTCTGCATACAAAAA-GGGATATGTAGAGAATGACTAATCTAAAAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG s panTro5.chr17 16278062 503 + 83181570 GCTCGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTCCTAGTTGCCTGACTAACAAAAC-CAAAGCAGAGTCAAGGCCAGGCCTATTCCTGCCCAGCCTGTTCCTGACCCTCCTGTGATCACAGATATGAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTAATGGGC----TCAGACTAGCCAGGACCTGTTTCACAACCGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCTGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAATCTAAAAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCGGGAATGAGAGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16185506 503 + 83442489 GCTCGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTCCTAGTTGCCTGACTAACAAAAC-CAAAGCAGAGTCAAGGCCAGGCCTATTCCTGCCCAGCCTGTTCCTGACCCTCCTGTGATCACAGATATGAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTAATGGGC----TCAGACTAGCCAGGACCTGTTTCACAACCGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCTGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAATCTAAAAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4020537 502 + 4267968 GCTAAATGCTGAAAACCTAAACAAAA-GAGATGGCTGTAAAAA-CTACAAACCCTAATTCCTAGTTGCCTGACTAACCAAAC-CAAAGCAGA-TCAAGGCCAGGCCTATTCCTGCCCAGCCTGTTCCTCACCCTCCTGTGATCACAGATATGAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCAGACATCAACGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAAAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTAGCCAGGACCTGTTTCACAACCGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCTGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAATCTAAAAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2002854 503 - 2193130 GCTCGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTCCTAGTTGCCTGACTAACAAAAC-CAAAGCAGAGTCAAGGCCAGGCCTATTCCTGCCCAGCCTGTTCCTGACCCTCCTATGATCACAGATACGAGACCGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTGAAGCAGAACCATGAGCAGGTG-ATTTCCCTGAAGAGTGACGGGC----TCAGACTCGCCAGGACCTGTTTCACAACCACCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCTGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGATAGTGAGTAATCTGAAAACCTGTGATATGAGGTTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30074365 503 - 77216781 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTATAAACCCTAATTCCTAGTTGCCTGACAAACCAAAC-CAAAGCAGAGTCAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACCGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCTTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCGCCAGGGCCTGTTTGATAACTGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGTTCAATTAGCCGAGGAAGTAATTctgcatacaaaaa-tggatatgtagagaatgagtagtctaacaacctgtgatatgagattaggattt------ttctgccagaggcaggaatgagagtg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27986657 502 - 80997621 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTATAAACCCTAATTCCTAGTTGCCTGACAAACCAAAC-CAAAGCAGAGTCAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACCGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCGCCAGGGCCTGTTTGATAACTGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCCGAGGAAGT-ATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAGTCTAACAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2044370 503 + 10377808 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTATAAACCCTAATTCCTAGTTGCCTGACAAACCAAAC-CAAAGCAGAGTCAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACCGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGTAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCGCCAGGGCCTGTTTGATAACTGCCACAGGGTCC-AGGACAGGCCGTCAGTAGAGGCTCAATTAGCCGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAGTCTAACAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1929311 503 - 8458610 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTATAAACCCTAATTCCTAGTTGCCTGACAAACCAAAC-CAAAGCAGAGTCAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACTGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCGCCAGGGCCTGTTTGATAACTGCCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCCGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAGTCTAACAACCTGTGATATGAGATGAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64884834 503 + 75148670 GCTTGATGCTGGAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTATAAACCCTAATTCCTAGTTGCCTGACAAACCAAAC-CAAAGCAGAGTTAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACCGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCACCAGGGCCTGTTTGATAACCACCACAGGGTCC-GGGACAGGCTGTCATTAGAGGCTCAATTAGCTGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAATGAGTAGTCTAACAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2114348 503 + 4244037 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTATAAACCCTAATTTCTAGTTGCCTGACAAACCAAAC-CAAAGCAGAGTCAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACTGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCGCCAGGGCCTGTTTGATAACTGTCACAGGGTCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCCGAGGAAGTAATTctgcatacaaaaa-tggatatgtagagaatgagtagtctaacaacctgtgatatgagattaggattt------ttctgccagaggcaggaatgagagtg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2136735 503 + 4569836 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTCCTAGTTGCCTGACAAACAAAAC-CAAAGCAGGGTCAAGGCCAAGCCTATTCCTGCCCAGCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACTGAGATGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAATCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCATGAGCAGGTG-AGTTCCCTGAAGAGTGATGGGC----TCAGACTCACCAGGGCCTGTTTCATAACCGCCACAGGGTCC-AGGACAGGCTGTCGGCAGAGGCTCAATTAGCCGAGGAAGTAATTCTGCATACAAAAA-TGGATATGTAGAGAAAGAGTAATCTAACAACCTGTGATATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAATGAGAGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46108768 501 - 159171411 GCTTGATGCTG-AAACCTAAACAGAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTTCTAATTGCCTGACAAACCAAGC-TAAAGCAGCATCAAGGCCAAGCCTGTTCCTGCTCACCCTGTTCCTGACCCTCCTATGATCACAGATATGAGACAGAACTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGACGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTG-AATTCCCTGAAGAGTGATGGGC----TCAGACTCGCCAGGGCCTGTTTCATAACCGCCCCAGGATCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCCAAGGAAGTAATGCTACATACAGAAA-GGGATATGTAGAGA-TGAGTAACCTAAAGATCTGTGACATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAGGGAGAGTG i calJac3.chr5 I 9 C 0 s saiBol1.JH378271 1819036 502 + 3513951 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTTCTAATTGCCTGACAAACCAAAC-TAAAGCAGCATCAAGGCCAAGCCTGTTCCTGCTTACCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACAGAGCTGTCCCTGCGGCGGTTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTG-AATTCCCTGAAGAGTGATGGGC----TCAGACTCGCCGGGGCCTGTTTCACAACCGCCACAGGATCC-AGGACAGGCTGTCAGTAGAGGCTCAATTAGCCGAGGAAGTCATTCTACATACAGAAA-GGGATATGTAGAGA-TGAGTAACTTAAAGATCCGTGACATGAGATTAGGATTT------TTCTGCCAGAGGCAGGAAGGAGAGTG i saiBol1.JH378271 I 9 C 0 s aotNan1.NW_018502359v1 6984728 498 - 7032639 GCTTGATGCTGAAAACCTAAACAAAA-GAGATGGCTATAAAAA-CTACAAACCCTAATTTCTAATTGCCTG----ACCAAAC-TAAAGCAGCATCAAGGCCAAGCCTGTTCCTGCTCACCCTGTCCCTGACCCTCCTATGATCACAGATATGAGACTGAGCTGTCCCTGCGGCAGTTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGACGAGCTGACACTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTG-AATTCCTTGAAGAGTGATGGGC----TCAGACGCGTCAGAGCCCGTTTCACAACCGCCACAGGATCC-AGGACAGGCTGTCAGTAGAGGCGCAATTAGCCGAGGAAGTAATTCTACATACAGAAA-GGGATATGTAGAGA-TGAGTAACCTAAAGATCTGTGACACGAGATTAGGATTT------TTCTGCCAGAGGCAGGAAGGAGAGTG i aotNan1.NW_018502359v1 I 9 C 0 s micMur3.chr16 35901633 487 - 65901067 GCTCAATGTTGAAAACCTAAACAAAC-AAGAAGGCTATAAAAC-CTACGAATCGTAACTCCCAGTTGTTTGACAAACCAAAG-CAAAGCGGAGTCAAGGCCAGGCCTGTCTCCGCCTAGCTTGTCCCTGATCCTGCTGTGATCACAGGTACGAGACAGAGCTGTCCCTGCGGCAGCTGGTGGAGTCGGACATCAACGGCCTGCGCAGGATCCTGGACGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTGAAGTTCCCCAAAGAGCGACAGGA----TCAGACTCGCCAGGGCCTGTTTCCCAACCT------------------GGCTGTCAGGGGAAGCTCAATTAGCCAAGGAAGCTATTCTGCAAACACAAA-GGGATCTGCAGAGAATGAGTAATCTAAGATTCAGTGATACGAGATTAGGGTTT------TTCTGCCAGAGGCAGCATTGAGAGTG i micMur3.chr16 I 397 I 311 s otoGar3.GL873537 22800231 502 + 28711273 GCTTGATGTTGAAAACCTAAACAAAT-GAGATGGCTATAAAGC-CTACAAACCCTAATTCCCGGT--GTTGATAAACCAAAACCAAAGCTGAGTCAAGGCCAGGCCTGTTTCTGCCTAGCGTGTCCCTGATTCTGCTGTGATCACAGGTACGAGACGGAGCTGTCCCTGAGGCAGCTGGTGGAGTCGGACATCAACGGCCTTCGCAGGATCCTGGACGAGCTGACCCTGTGCAGGTCTGACCTGGAGGCCCAGGTGGAGTCCCTGAGGGAGGAGCTGCTCTGCCTCAAGCAGAACCACGAGCAGGTAAAGTTCCCCAAGGAGCAGCAGGC----TCAGACTTGTCAGGGCCTGTTTCCCGACCTCCCTGGAGACT--GGACAGGCTGTCAGTGGAAGCTGCATTAGGCAAGGAGGCTGTGCTGCCAACAGAAA-GGGTTCCGAAGAGAATGAGTAACTTAAAATTCAGTGGTGGGAGATGAGGATCT------TTCTGCCAGAAGTAGCAATGAGAGTG i otoGar3.GL873537 I 9 I 1 s mm10.chr11 22068152 496 - 122082543 -CTGGATCTTGACAACTTAAATAGAAGGAGACAGTTATAAAAA-CTAGTATCTGTCATGCCTAGTTATCCAACAAAGCAAAC-CAAAGCAGAGTCTGGGCTAGGCATGCTCCTACCCACTCTATCCCCGATTCTCCTGTGATTGCAGGTACGAGACAGAGCTTAGTCTGCGGCAGCTGGTAGAGGCTGACATCAACAGCCTGCGCAGGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGGCGCAGGTGGAGTCCCTGAAGGAGGAGCTGCTCTGCCTCAAGCAGAATCACGAGCAGGTG-AAGTCTCCCAA-AGTGAAGCACACGGTCAGACTGGCCAGGACATGTTT-GTAACTGCCACGGGCTGTGGGGAGAGGCTGTGAGTTGAGGCTCAATTAGCTCAGAAAGCTGTTCTCCAAACAAAAA-TGTATTTGTGGAGAATGAGTAATCT---------TGATAGGAGATTTGGATTT------TT-TGCCAGAGGCTGGAACAAGAATA i mm10.chr11 C 0 I 1 s canFam3.chr9 21415455 488 + 61074082 GCTCAGTGTTAAAAATCTAAATGTAA-GAGAAGGCTGTAGAGA-CTGCAAGCTCCAACTTCCAGTTATGTGACAAACCAAAC-CAAACCAGAGTCAGGGCCAGGCCCATTCCTGTCTGGTGGGTCCCTGATGCCCCTGT-ATCGCAGGTACGAGACAGAGGTGGGCTTGCGGCAGCTGGTGGAGTCGGACATCAATGGCCTGCGCAGGATCCTGGATGAGCTGACCCTGTGCAAGTCCGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGAGTCTCAAGCAGAACCATGAGCAGGTGAAGTTCCCCAAAGAACAACAGGC----TCAAACTCGCCAAGGCCTGTTTC-CAACTGCCATGGGCTGT-GGGA-------------GGGACTCAACTAACTGAGGAATCTGTCCTCTAAACAAAAA-GGGATTTGTAGAGAATGAGCAATCTAA-AGCCTGTGATATGAGATTAGGATGT------TTCTGCCAGAGGTAGGAATGAGAGTA i canFam3.chr9 I 9 I 1 s dasNov3.JH570468 393737 477 - 852752 ------------AAACCCAAACAAAC-AAGAGAGTTGTAAGAACCCACAGGTCCTGACTTCCAGTTGTCTGACAAACCAAAG-AAAACTAGAGTCAGCACGAGGCCTTTTCCTGCCCGTTCTCTCCCTGATCCCTCTGTGATCACAGGTACGAGACGGAGTTGTCCCTGCGGCAGCTGGTGGAGGCCGACATCAATGGCCTACGCAGGATCCTGGATGAGCTGACCCTGTGCAAGGCTGACCTGGAGGCCCAGGTGGAGTCCCTGAAGGAGGAGCTGCTGTGCCTCAAGCAGAACCACGAGCAGGTG-AGGTTCCC-AAGGGCGACAGGA----CCAGACTTGCCATGTCCTG---------------------C-AGGAGAGTCTGTTGATGAAGCCTCACTTAGCTGAGGAAGCCGTTCTCGAAACAAAAAGGGGATTTGTAAGGAGTGAGTCATCTGAAAATTTGTGATATGAGATTAGGATTTTGCTAATCCTGCCAGAGGCAGGAATGTGATTG i dasNov3.JH570468 C 0 I 1 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=3210923.000000 s hg38.chr17_GL383564v2_alt 91980 310 + 133151 AGGAAGTT--GGCAAGCC----CAGTAGTGAGGAAAGCTGGGTAATGAGGCAGAAGCCACAGCCTCTCCTGTGCCCAGGTTAGAG-TGCAT---GCAGCagcaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccatcaggcagagagggctgagcta-gaa-caaaatgcaattctcttcgttcctgtccagagc-tctttctgctTGCTGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACCATTATGGCTAAGTCAGTTG-GGC-AAAAAAGAAGACGTGTATTTTATGC s panTro5.chr17 16278565 310 + 83181570 AGGAAGTT--GGCAAGCC----CAGTAGTGAGGAAAGCTGGGTAATGAGGCAGCAGCCACAGCCTCTCCTGTGCCCAGGTTAGAG-TGCAC---ACAGCagaaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccatcaggcagagagggctgagctg-gaa-caaaatgcaattctcttcgttcctgtccagagc-tctttctgctTGCTGTTCA---GTGTTGCTTGGAAACAGCCTCGAGCAAAATGCTCACCATTATGGCTAAGTCAGTTG-GGC-AAAAAAGAAGACATGTATTTTATGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186009 310 + 83442489 AGGAAGTT--GGCAAGCC----CAGTAGTGAGGAAAGCTGGGTAATGAGGCAGCAGCCACAGCCTCTCCTGTGCCCAGGTTAGAG-TGCAC---ACAGCagaaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccatcaggcagagagggctgagctg-gaa-caaaatgcaattctcttcgttcctatccagagc-tctttctgctTGCTGTTCA---GTGTTGCTTGGAAACAGCCTCGAGCAAAATGCTCACCATTATGGCTAAGTCAGTTG-GGC-AAAAAAGAAGACATGTATTTTATGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021039 310 + 4267968 AGGAAGTT--GGCAAGCC----CAGTAGTGAGGAAAGCTGGGTAATGAGGCAGAAGCCACAGCGTCTCCTGTGCCCAGGTTAGAG-TGCAC---GCAGCagcaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccatcaagcagagagggctgagctg-gaa-caaaatgcaattctcttcgttcctgtccagagc-tctttctgctTGCTGTTCA---GTGTTGCTTGGAAACAGCCTCGAGCAAAATGCTCACCATTATGGCTAAGTCAGTTG-GGC-AAAAAAGAAGATATGTATTTTATGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2003357 306 - 2193130 AGGAAGTT--GGCAAGCC----CAGTAGTGAGGAAAGCTGAGTAACGAGGCAGCAGCCACAGCCTCTCCTGCACCCAAGTTAGAG-TGCAC---GCAGCagcaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccaccaggcagagaaagctgagctg-gaa-caaaatgcaactctcctcgttcctgtccagagc-tctttc----tgctGTTTA---GTGTTGCTTGGAAACAGCCTCGAGCAAAATGCTCACCGTTATGGCTAAGTCCGTTG-GAC-AAAAAAGAAGACACGTATTTTATGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30074868 303 - 77216781 aggaagtt--ggcaagcc----cagtaatgaggaAAGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCCTGCACCCTGGTTAGAG-TGCAC---ACAGCagcaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccaccaggcagagagggctgagctg-gaa-caaaatgcaactc---tcattcctgtccagagc-tctttc----tgctGTTCA---GCGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACTGTTACGGCTAAGTCAGTTG-GAC-AAAAAAGAAGACATGTATTTTATGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987159 303 - 80997621 AGGAAGTT--GGCAAGCC----CAGTAATGAGGAAAGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCCTGCACCCTGGTTAGAG-TGTAC---ACAGCAGCAATCTTC--TATTCCAATTCTC-CATTT--GTAGCTGGAGAAGCCAGGATGGCCTAGGCCCACCAGGCAGAGAGGGCTGAGCTG-GAA-CAAAATGCAACTC---TCATTCCTGTCCAGAGC-TCTTTC----TGCTGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACTGTTACGGCTAAGTCAGTTG-GAC-AAAAAAGAAGACATGTATTTTATGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2044873 303 + 10377808 AGGAAGTT--GGCAAGCC----CAGTAATGAGGAAAGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCCTGCACCCTGGTTAGAG-TGTAC---ACAGCAGCAATCTTC--TATTCCAATTCTC-CATTT--GTAGCTGGAGAAGCCAGGATGGCCTAGGCCCACCAGGCAGAGAGGGCTGAGCTG-GAA-CAAAATGCAACTC---TCATTCCTGTCCAGAGC-TCTTTC----TGCTGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACTGTTACAGCTAAGTCAGTTG-GAC-AAAAAAGAAGACATGTATTTTATGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1929814 304 - 8458610 AGGAAGTT--GGCAAGCC----CAGTAATGAGGAAAGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCCTGCACCCTGGTTAGAG-TGCAC---ACAGCagcaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccaccaggcagagagggctgagctg-gaa-caaaatgcaactc---tcatgcctgtccagagc-tctttc----tgctGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACTGTTACGGCTAAGTCAGTTG-GACAAAAAAAGAAGACATGCATTTTATGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64885337 300 + 75148670 AGGAAGTT--GGCAAACT-------TAATGAGGAAAGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCCTGCACCCTGGTTAGAG-TGCAC---ACAACAGCAATCTTC--TATTCCAATTCTC-CATTT--GTAGCTGAAGAAGCCAGGATGGCCTAGGCCCACCAGGCAGAGAGGGCTGAGCTG-GAA-CAAAATGCAACTC---TCATTCCTGTCCAGAGC-TCTTTC----TGCTGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACTGTTACGGCTAAGTCAGTTG-GAC-AAAAAAGAAGACATGTATTTTATGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2114851 304 + 4244037 aggaagtt--ggcaagcc----cagtaatgaggaAAGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCCTGCACCCTGGTTAGAG-TGCAC---ACAGCagcaatcttc--tattccaattctc-cattt--gtagctggagaagccaggatggcctaggcccaccaggcagagagggctgagctg-gaa-caaaatgcaactc---tcattcctgtccagagc-tctttc----tgctGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAATGCTCACTGTTACGGCTAAGTCAGCTG-GACAAAAAAAGAAGACATGTATTTTATGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137238 302 + 4569836 AGGAAGTT--GGCAAGCC----CAGTAATGAGGAAAGTTGAGTAACAAGGAAGCAGACACAGCCTCTCCTGCACCCTGGTTAGAG-TGCAC---ACAGCagcaatcttc--tattccaa-tctc-cattt--gtagctggagaagccaggatgacctaggcccatcaggcagagaggactgagctg-gaa-caaaatacaactc---tcattcctgtccagagc-tctttc----tgctGTTCA---GTGTTGCTTGGAAACAGCCTCGAGCAAAATGCTCACTGTTACGGCTAAGTCAGTTG-GAC-AAAAAAGAAGACATGTATTTTATGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46109269 304 - 159171411 AGGAAGTT--GGCAAGTC----CAGTAATGAGGAAAGTTCAGTAACAAGGCAGCAGCCACAGCCCCTCTGGCACCCAGTTTAGGG-TGCAC---GCTGCAGCAATCTTT--TATTCCAATTCTC-CATTT--GTAGCTGGAGAAACCAGGAAGGCATAGGCCCACCAGG--AAGGGggctgagctg-gaa-caaaatgcaactctcctcgttcctatccagagc-tctttc----tgctGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAACACTCACTGTCACGGCTTAGTCAGTTG-GAC-AAAAAAGGAGACATGTATTTTATGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1819538 303 + 3513951 AGGAAGTT--GGCAAGCC----CAGTAATGAGGAACGTTGAGTAACAAGGCAGCAGCCACAGCCTCTCTGGCACCCAGGTTAGGG-TGCAC---GCTGTAGCAATCTTT--TATTCCAATTCTC-CATTT--GTAGCTGGAGAAACCAGGAGGGCACAGGCCCACGAGG--AAGGGGGCTGAGCTG-GAA-CAAAAGGCAACTCTCCTCGTTCCTATCCAGAGC-TC-TTC----TGCTGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAGAACACTCACTGTCATGGCTTAGTCAGTTG-GAC-AAAAAAGAAAACATGTATTTTATGC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6985226 304 - 7032639 AGGAAGTT--GGCAAGCC----CAGTAATGAGTAAAGTTGAGTAACAAGGCCGTAGCCACAGCCTCTCTGGCACCCAGGTTAGGG-TGCAC---GCTGTAGCGATCTTT--TATTCCAATTCTC-CATTT--GTAGCTGGAGAAACCAGGAGGGCATAGACCCACAAGA--AAGTGggctgagctg-gaa-caaaatgcaactctcctcgttcctatccagagc-tctttc----tgctGTTCA---GTGTTGCTTGGAAACAGCCTTGAGCAAAACACTCACTGTCACAGCTTAGTCAGTTG-GAC-AAAAAAGAAGACATGTATTTTATGC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22800734 305 + 28711273 AGGAAGGT--GGCAAGCC----TAGTAATGAGGGAAGGTCAGCGCCAAGGCTGCAGCTACAGCCCCTTCCGTGGCCAGGTCAAAG-CACTG---ACAGTGGAGATCTTTAAAATCCCAGTTCTCTCAGTT--GTAACTGGAGAGAGCAGGGGGCCCAAGGGCCCCAGGGCAGAAAGGGCTGCGCAG-TGC-C------CGGTTCTCCTCACTCCTCCCCAGAGT-TCTTTG----TGCTGCTAATTGGTGTTGCTGGGAAGCAACACTGGGCAAAATGCTCACCATCCTGGCTCAGCCAGTTG-CA--GGGGAAGAAGGCAGGTATTTTCTAC i otoGar3.GL873537 I 1 I 1 s mm10.chr11 22068649 291 - 122082543 AGGAAGTT--GGCTAGCTCAGTCAGTAATGAGGAAAGGTCAGAGCTAAGGCAGCTGCTGTAGACTCTGTCACTCCCCAATGAGAG-TGTTT---GTGGACACCATTGCT--GACTGTGATTCTC-CATTT--TGAATGGCAAGGAGCAGGGTGGCTTAGGGCTGCCCAAC-AAGAGGGCTGAGCTG-GACTCAGAACACAACTCT--TCATTGCCATCCAAAAT-GCTTTT----GGATATCT----GTACTGCTTGGAAGAAATACGGAGTAAGGTGTTT--------------GTCAGTCACCAC-CACACAGGAAACACACA---GGTGC i mm10.chr11 I 1 I 1 s canFam3.chr9 21415944 280 + 61074082 AGGAAATT--GGCAAGGC----CTGTAATGAGGAAAGGCCAGCAACCAGGCAGTGCCCACAGCTTCTTCCACTCCCAGGTCAGAG-CATACCAGGCTGTAGAGATCTTG--TATCCCAATACGC-CATTT-AGCAACTGGAGAGGCCAGGACAG-------CCACCCAGCAGAGAGGGCTCAGCTG-GAA-ACAAAATCAACTCTCTTCCTTC---------------TCC---------TCCA---GTGTTGCCTAGAGGAAATGTTGAGCAAAATGTTCACTGTCACTGTTTTGTCAGTTG--AC----AAAGAAGACGGACATTTTGTGC i canFam3.chr9 I 1 I 1 s dasNov3.JH570468 394215 310 - 852752 AGGAAGTTGGGGCAAATC----CAGGAATGAGGAAAGGTCAGCCACAAGGC---AACCATGGCCTCTTCTGGGCCCAGgtcagaactggatgggactgcagagattttc--tagccccatttcc-cattttTGTGACCAGAGGGAGCAGGATAGCCTCCCATCACAAAGCTGAGAGGATTGGGCTGCAAA-CAAAAGGCAAGTC---TCATTTTATTCCAGAGAGTCTTTC----TTCTCTTCA---GTGTTGCCCAAAAGAAATACTGAGCAAAAGGCTGACCATCATGGTTTGGGCAGTTG-AAT-GATAAAGAATACCTATGGGTTGTGC i dasNov3.JH570468 I 1 C 0 e micMur3.chr16 35902120 311 - 65901067 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=1648770.000000 s hg38.chr17_GL383564v2_alt 92290 137 + 133151 -AACCTGAAATCCAAGAACAATGTAAATGGTGACagttaatattaatcaagtgcttagt-atgtgc----------------------------caaacattgtgctaagtgcttta--ACTCCGGAGG------------CAGttctcatgtta-agatgaagaaatcgaggcttcaagaa s panTro5.chr17 16278875 137 + 83181570 -AACCTGAAATCCAAGAACAATGTAAATGGCGacagttaatattaatcaagtgcttagt-atgtgc----------------------------caaacattgtgctaagtgcttta--actccggagg------------cagttctcatttta-agatgaagaaatcgaggcttcaagaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186319 137 + 83442489 -AACCTGAAATCCAAGAACAATGTAAATGGCGacagttaatattaatcaagtgcttagt-atgtgc----------------------------caaacattgtgctaagtgcttta--acaccggagg------------cagttctcatttta-agatgaagaaatcgaggcttcaagaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021349 137 + 4267968 -AACCTGAAATCCAAGAACAATGTAAATGGTGACagttaatattaatcaagtgtttagt-atgtgc----------------------------caaacattgtgctaagtacttta--actccggagg------------cagttctcatttta-agatgaagaaatcgaggcttcgagaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2003663 137 - 2193130 -AACCTGAAATCCAAGAACAATGTAAATGGtgacagttaatattaatcaagtgcttagt-atgtgc----------------------------caaacattgtgctaagtgcttta--actccgcagg------------cagttctcatttta-agatgaagaaaccgaggcttcaagaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075171 165 - 77216781 -AACCTGAAATCCAAGAACAATGTAAATGGTGACagttaatattaatcaggtgcttagt-atgtgccgaacattnnnnnnnnnnnnnnnnnnnncgaacattgtgctaagtgcttta--actccggagg------------cagttctcatttta-agatgaagaaattgaggcttcaagaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987462 137 - 80997621 -AACCTGAAATCCAAGAACAATGTAAATGGTGACagttaatattaatcaggtgcttagt-atgtgc----------------------------cgaacattgtgctaagtgcttta--ACTCCGGAGG------------CAGTTCTCATTTTA-AGATGAAGAAATTGAGGCTTCAAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045176 137 + 10377808 -AACCTGAAATCCAAGAACAATGTAAATGGTGACagttaatattaatcaggtgcttagt-atgtgc----------------------------cgaacattgtgctaagtgcttta--actccggagg------------cagttctcatttta-agatgaagaaattgaggcttcaagaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930118 137 - 8458610 -AACCTGAAATCCAAGAACAATGTAaatgatgacagttaatatgaatcaggtgcttagt-atgtgc----------------------------cgaacattgtgctaagtgcttta--actctggagg------------cagttctcatttta-agatgaagaaattgaggcttcaagaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64885637 137 + 75148670 -AACCTGAAATCCAAGAACAATGTAAATGGTGACagttaatattaatcaggtgcttagt-atgtgc----------------------------cgaacattgtgctaagtgcttta--ACTCCGGAGG------------CAGTTCTCATTTTA-AGATGAAGAAATTGAGGCTTCAAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115155 137 + 4244037 -AACCTGAAATCCAAGAGCAATGTAaatagtgacagttaatattaatcaggtgcttagt-atgtgc----------------------------cgaacattgtgcttagtgcttta--actctggagg------------cagttctcatttta-agatgaagaaattgaggcttcaagaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137540 133 + 4569836 -AACCTGAAATCCAAGAACAATGTAAATGGTGAcag----tattgatcaggtgcttagt-atgtgc----------------------------cgaatattgtgctaagtgcttta--actctggagg------------cagttctcatttta-agatgaagaaatcgaggcttcaagaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46109573 118 - 159171411 -AACCGGCAATCTGAGAACAATGTAAACGGTGACagttaatattaatcaagtgcttagt-atatgc----------------------------caaacattgtgctaagtgctttaGGACTCCGGAGG------------CAGTTCTCATTTTA-AGATG--------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1819841 135 + 3513951 -AACCAGCAATCCGAGAACCATGTAAACAGTGAc----aatattaatcaagtgcttagt-atatgc----------------------------caaacattgtgctgagtgctgtagaactccggagg------------cagttctcatttta-agatgaagaaattgaggcttcaagaa i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6985530 138 - 7032639 -AACCAGCAATCCGAG-ACGATGTAAACGGTGACagttaatattaatcaagtgcttagt-atatgc----------------------------caaactttgtgctaagtgctttaGAACTCCGGAGG------------CAGTTCTCATTTTA-AGATGAAGAAATTAAGACTTCAAGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35902431 139 - 65901067 -AACCTCCGATCCCAGAACAATGTACATGGTGACAGTTCGTattcatttagggcttatc-atgcac----------------------------caaacattgtgctaagtgctttaggactccggagg------------cagttctcatttta-ggattaagaaattgaggcttcaagaa i micMur3.chr16 I 311 C 0 s otoGar3.GL873537 22801040 133 + 28711273 -AACTTCCAAACCCAGAACA------ATGGtgacaattaacattaaccaagtgctcatt-aggtac----------------------------caaacattatgctaagtgctttaGAACTCCAGAAG------------CAGTTCTCAAGTTA-GGATAAAGAAACTGAGGCTGCAAGAA i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22068941 134 - 122082543 -AACTCTACATCCTAGAATTCTGTATGTAGTGACAGTTAATGCTAACCAAGAGCTTATT-ATGCAC----------------------------TCAAATTAGTGCTAAGCACTTGAGAACTTCAGAAG------------AAA-----AAAAAA-AGATGAGCAATTTGAAGATTCTAGAA i mm10.chr11 I 1 I 366 s canFam3.chr9 21416225 136 + 61074082 -AACTTTAAATACCA----AATGTAaatagtgatagttaatattagttaagagcttact-gtgtgc----------------------------caaacgctatgctaagtgctttggaactccaaagg------------tagttctcattttacagatgaagaacttgaggtttctagaa i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 394525 141 - 852752 AAA---GAATACCCAGAAAGATGAAAATagtaatagctcatattaattgagtgtttattaatttgc----------------------------caaacattgtgctaagtgctttagaacccaaaaggtaagtactagtccagttctcattttacagatgaaacaattgag---------- i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=90421.000000 s hg38.chr17_GL383564v2_alt 92427 7 + 133151 gcttcta s panTro5.chr17 16279012 7 + 83181570 gcttcta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186456 7 + 83442489 gcttcta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021486 7 + 4267968 gcttcta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2003800 7 - 2193130 gcttcta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075336 7 - 77216781 gcttcta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987599 7 - 80997621 GCTTCTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045313 7 + 10377808 gcttcta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930255 7 - 8458610 gcttcta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64885774 7 + 75148670 GCTTCTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115292 7 + 4244037 gcttcta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137673 7 + 4569836 gcttcta i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1819976 7 + 3513951 gcttcta i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6985668 7 - 7032639 GCTTCTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35902570 7 - 65901067 gcttcca i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22801173 7 + 28711273 GCTACCA i otoGar3.GL873537 C 0 I 270 s canFam3.chr9 21416361 7 + 61074082 gcttcta i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 394666 7 - 852752 gcatcta i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22069075 366 - 122082543 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M e calJac3.chr5 46109691 0 - 159171411 C a score=2283574.000000 s hg38.chr17_GL383564v2_alt 92434 197 + 133151 gaagcaatgtattaagtggtagagatgaggttgaatacaaatttgtctgaaatccgcctaagcccAAGTACCAAGCTATGCT-------------------TAGCAGG--GAAGTAAACAGATACTTATTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT s panTro5.chr17 16279019 197 + 83181570 gaaacaatgtattaagtggtagagatgaggttgaatacaaatttgtctgaaatccgcctaagcccaagtaccaagctatgct-------------------TAGCAGG--GAAGTAAACAGATACTTATTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186463 197 + 83442489 gaaacagtgtattaagtggtagagatgaggttgaatacaaatttgtctgaaatccgcctaagcccaagtaccaagctatgct-------------------TAGCAGG--GAAGTAAACAGATACTTATTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021493 197 + 4267968 gaagcaatgtattaagtggtagagatgaggttgaatacaaatttgtctgaaatcagcctaagcccaagtaccaagctatgct-------------------TAGCAGG--GAAGTAAACAGATACTTATTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2003807 197 - 2193130 gaagcaatgtattaagtggtagagatgaggttgaatacaaatttgtctgaaatccacctaagctcaagtaccaagctatgct-------------------TAGCAGG--GAAGTAAACAGATACTTATTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTCT------------GAAGTAAGCGGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075343 197 - 77216781 gaagcaatgtattaagtggtagagattaggttgaatacaaatttgtctgaaatccacctaagcccAAGGACCAAGCTATGCT-------------------CAGCAGG--GAAGTAAACAGATATTTATTGCTTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987606 197 - 80997621 GAAGCAATGTATTAAGTGGTAGAGATTAGGTTGAATACAAATTTGTCTGAAATCCACCTAAGCCCAAGGACCAAGCTATGCT-------------------CAGCAGG--GAAGTAAACAGATATTTATTGCTTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045320 197 + 10377808 gaagcaatgtattaagtggtagagattaggttgaatacaaatttgtctgaaatccacctaagcccAAGGACCAAGCTATGCT-------------------CAGCAGG--GAAGTAAACAGATATTTATTGCTTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACGCTTTAAGTCTCTTTTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930262 197 - 8458610 gaagcaatgtattaagtggtagagattaggctgaatacaaatttgtctgaaatccacctaagcccAAGGACCAAGCTATGCT-------------------CAGCAGG--GAAGTAAACAGATATTTATTGCTTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACGCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64885781 196 + 75148670 GAAGCAATGTATTAAGTGGTAGAGATTAGGTTGAATACAAATTTGTCTGAAATCCACCTAAGCCCAAGGACCAAGCTATGCT-------------------CAGCAGG--GAAGTAAACAGATATTTATTGCTTTCAGC-AA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115299 197 + 4244037 gaagcaatgtattaagtggtagagattgggttgaatacaaatttgtctgaaatccacctaagcccAAGGACCAAGCTATGCT-------------------CAGCAGG--GAAGTAAACAGATATTTATTGCTTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACGCTTTAAGTCTCTTCTATGCCAGGATGGCAGATTTT------------GAAGTAAGCATT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137680 197 + 4569836 gaagcaatgtattaagtggtagagattaggttgaatacaaatttgtctgaaatccacctaagcccAAGGACCAAGCTATACT-------------------CAGCAGG--GAAGTAAACAGGTATTTATTGCTTTCAGCAAA---------ATCTATGCTGGTGGAATCAACAAATCACCCTTTAAGTCTCTTCTGTGCCAGGATGGCAGATTTT------------GAAGTAAGCGTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46109691 196 - 159171411 -AAGCAATGCATTAAGTGGTAGAGATGAGGTTGAATTCAAAGTTGTCTGAAATCCGCCTAAGCCTAAGTACCAAGCTATGTT-------------------TAGCAGT--GAAGTGAACGGATAGTTATTGCTTTCAGCAGA---------ATCTATGCTGGTGGAATTGACAAATCACCCTTTAAGTCTCTTCTCTGTGAGGATGGCAGATTTT------------CAAGTAAGCATT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1819983 196 + 3513951 -aagcaatgcattaagtggtagagatgaggttgaattcgaagttgtctgaAATCCACCTAAGCCTAAGTACCAAGCTATGCT-------------------TAGCAGT--GAAGTGAACGGATAGTTACTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATTGACAAATCACCCTTTAAGTCTCTTCTCTGCGAGGATGGCAGATTTT------------GAAGTAAGCGTT i saiBol1.JH378271 C 0 I 309 s aotNan1.NW_018502359v1 6985675 195 - 7032639 -AAGCAATGCATTAAGTGGTAGAGATGAGGTT-AATTCAAAGTTGTCTGAAATCCACCTAAGCCTAAGTACCAAGCTATACT-------------------TAGCAGT--GAAGTGAACAGATAGTTATTGCCTTCAGCAAA---------ATCTATGCTGGTGGAATTGACAAATCACCCTTTAAGTCTCTTCTCTGCAAGGATGGCAGATTTT------------AAAGTAAGCATT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35902577 197 - 65901067 gaagctataaagtacgtggtagagacaaaaaccaattcaaatttgtctaacatccacttaagcccAAGTCCCAAGCTGTGCT-------------------TAGCAGT--AAGGTGAGTAGAAGCCTATTGCCTTCGGCAAA---------GTCCACACTGGTGGAACCAACAGATCACCAGTTAAGTCTGTGCTGTCCCAGGAGGGCAGATTTT------------GAAGCAAGCATT i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22801450 201 + 28711273 gaaGCTACAAAGTGAGTGGCAGAGATGAAACCCCATTCTACTTTGTTTAACACCCACCTAAG-CCAACCACCAAGCTGTGCT-------------------GAGCAGT--GAGGTGGATAGATG-CTGTTTCCATCAGCGAAACAGGATCTGTTCACACTGGTGGAATCAGCAGGT---CAGTTAAGCCCGTCCTACCCCAGGATGACAGGTTTT------------GGAGTAAGTGTT i otoGar3.GL873537 I 270 C 0 s canFam3.chr9 21416368 207 + 61074082 gaagccatatagtaagtggtagagatggttctcaatttaa----gcctgatgtt-acctaagtccaaGTATCAAGTTATGCTGGCTCTGTTAAGAGA---ATAGCAGG--AAAGTGAACAGATACTTATTTCCTTCAGCAAA---------ATCTAGGTTGATAGAATTGACAAGTCACCAGTTAGGTCTATTTCATCCCA-GATGGTAGGTTCC------------GAAGTAAGCATA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 394673 208 - 852752 gaagctatataTTGAATGGTAGAGATGAGACCCAATTCAAA--TGTCTGACATCCACCCAAGCCCCCGTGCCAAGCTTTACTAGCTCCCTAAAGAGGTTTGTGGCAAAACAAAATGAACAGATACTCATTTCCTTCACTGAA---------ATCTATACTA--------------------CCTAAATCTATGTAATCCCAGGATGGCAGATTTTAGCAGATGGCAGAAAGTGAGCATT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22069075 366 - 122082543 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=297433.000000 s hg38.chr17_GL383564v2_alt 92631 22 + 133151 CTGTATTTCCTCTTTAGCTAGA s panTro5.chr17 16279216 22 + 83181570 CTGTATTTCCTCTTTAGCTAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186660 22 + 83442489 CTGTATTTCCTCTTTAGCTAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021690 22 + 4267968 CTGTATTTCCTCTTTAGCTAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004004 22 - 2193130 CTGTATTTCCTCTTTAGCTAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075540 22 - 77216781 CTGTATTTCCTCTTCAGCTAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987803 22 - 80997621 CTGTATTTCCTCTTCAGCTAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045517 22 + 10377808 CTGTATTTCCTCTTCAGCTAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930459 22 - 8458610 CTGTATTTCCTCTTTAGCTAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64885977 22 + 75148670 CTGTATTTCCTCTTCAGCTAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115496 22 + 4244037 CTGTATTTCCTCTTCAGCTAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137877 22 + 4569836 CTGTATTTCCTCTTCAGCTAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46109887 22 - 159171411 CTGTATTTCCTCTTCAGCCAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1820488 22 + 3513951 cTGTATTTCCTCTTTAGCCAGA i saiBol1.JH378271 I 309 C 0 s aotNan1.NW_018502359v1 6985870 22 - 7032639 CTGTATTTCCTCTTTAGCCAGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35902774 22 - 65901067 CTTCGTTCCTTCTCTAGCCAGA i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22801651 22 + 28711273 CTTTATTTCTTTCTTAGCCAGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21416575 22 + 61074082 CTTTATTTCCTCTTTAGCCAGA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 394881 22 - 852752 CTTTATTTTCTCTTTAGGCAGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22069075 366 - 122082543 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=55067.000000 s hg38.chr17_GL383564v2_alt 92653 5 + 133151 CTCTG s panTro5.chr17 16279238 5 + 83181570 CTCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186682 5 + 83442489 CTCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021712 5 + 4267968 CTCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004026 5 - 2193130 CTCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075562 5 - 77216781 CTCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987825 5 - 80997621 CTCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045539 5 + 10377808 CTCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930481 5 - 8458610 CTCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64885999 5 + 75148670 CTCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115518 5 + 4244037 CTCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137899 5 + 4569836 CTCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46109909 3 - 159171411 --CTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1820510 5 + 3513951 CTCTC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6985892 5 - 7032639 CTCTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35902796 5 - 65901067 CTCTG i micMur3.chr16 C 0 I 163 s otoGar3.GL873537 22801673 5 + 28711273 CCTTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22069441 5 - 122082543 CTTTG i mm10.chr11 I 366 I 2 s canFam3.chr9 21416597 5 + 61074082 CTCTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 394903 5 - 852752 ATCTA i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=1580415.000000 s hg38.chr17_GL383564v2_alt 92658 143 + 133151 TTCTTTTTATT-----ATCCATGCTTAAGAGTCAAACA---TGTgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcccaccatgtatcagctttgagcccaaatcactgaatctct s panTro5.chr17 16279243 143 + 83181570 TTCTTTTTGTT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcccaccatgtatcagctttgagcccaaatcactgaatctct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186687 143 + 83442489 TTCTTTTTGTT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcccaccatgtatcagctttgagcccaaatcactgaatctct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021717 143 + 4267968 TTCTTTTTATT-----ATCCATGCTTAAGAGTCAAACA---TAAgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcccaccatgtatcagctttgagcccaaatcactgaatctct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004031 143 - 2193130 TTCTTTTTATT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctacatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttacataatggcctgccaggtatcagccctgagaccaaatcactgaatctct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075567 143 - 77216781 TTCTTTTCATT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcctgccatgtatcagctctgagcccaaatcactgaatatct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987830 143 - 80997621 TTCTTTTCATT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctatgtgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcctgccatgtatcagctctgagcccaaatcactgaatatct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045544 143 + 10377808 TTCTTTTCATT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataacggcctgccatgtatcatctctgagcccaaatcactgaatatct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930486 143 - 8458610 TTCTTTTCATT-----ATCCATGCTTCAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcctgccatgtatcagctctgagcccaaatcactgaatctct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886004 143 + 75148670 TTCTTTTCATT-----ATCCATGCTTCAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcctgccatgtatcagctctgagcccaaatcactgaatctct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115523 143 + 4244037 TTCTTTTCATT-----ATCCATGCTTCAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcctgccatgtatcagctgtgagcccaaatcactgaatctct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2137904 143 + 4569836 TTCTTTTCATT-----ATCCATGCTTAAGAGTCAAACA---TATgaggctatatgg------tatactagcaaaaacactgaactgggcatttggggaccagagtttaaataatggcctgccatgtatcagctctgagcccaaatcactgaatctct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46109912 143 - 159171411 TTCTTTTTATT-----ACCCATGCTTAAGAGTCATCCA---TATgaggccatatgg------tacactaggaaaaacactgaactgggcatttggggaccagagtttaaatcatggcctgccatgtatcacctctgagcccaaattactgaatctct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1820515 140 + 3513951 TTCTTTTTATT-----ACCCATGCTTAAGAG--AACCA---TATGAGGCCATAC-A------TAAACTAGCAAAAACACTGAACTGGGCATTTGGGGACCAGTGTTTAAATCATGGCTTGCCGTGTATCACCTCTGAGCCCAAATTACTCAATCTCT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6985897 143 - 7032639 TTCTTTTTATT-----ACCCGTGCTTAAGAGTCAACCA---TATgaggccatgtgg------tacactagcaaaaacactgaactgggcatttggggaccagagtttaaatcatggcctgctgtgtatcacctctgagcccaaattactgaatctct i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22801678 120 + 28711273 TCCTTTTCCGT-----ACCCATGCTGGAGAACCAAATA---CAAGA-GCTAT---------------------------TGAACTGGGCATCTGGTGACCAGAGTTTGCACTGTGGTC-ACCACGTCTCAGCTCTGAGGTGAAGCCACTGCCTGTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22069448 153 - 122082543 TTCTTTGTAGTCAGACATCCAAGCTTAAGGAAAAAATAATTTATGG----ATATGGTGGGGATATTTCAGCAAGACATCTGAACTGGGCTATTAGGGAGCAGAATATGAATGGTTGCCGACTCCATCTCAGCTCTGGTACTAAACCATGACATCCCT i mm10.chr11 I 2 C 0 s canFam3.chr9 21416602 129 + 61074082 ACCTTTTTATT-----AGCTGTGGTTAAGAATCAAACC---TAAGAACCTCTGTGG------TATATGAGCAAAAACACTGAACTAGGTGCTTGGGGCTCACAGTGT---------TCTATCACATTTCAGCATGGAGGCCAAATCGCTG-----CC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 394908 143 - 852752 TCCTTGTTATT-----ACCCATGATTAAGAACCAAACA---TAAAAGCCTATGTGG------TATCCTAGCAAAAATATTGAACTGGGTATTAGTGGACCAGAGTACAAATCATGGTCCATCATGTCTTAGCTTTGAGGGCAAATCACTGCACCTCt i dasNov3.JH570468 C 0 I 123 e micMur3.chr16 35902801 163 - 65901067 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=291495.000000 s hg38.chr17_GL383564v2_alt 92801 28 + 133151 ctAAATGAGGAGTGATACATTTAATACA s panTro5.chr17 16279386 28 + 83181570 ctAAATGAGGAGTGATACATTTAATACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186830 28 + 83442489 ctAAATGAGGAGTGATACATTTAATACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021860 28 + 4267968 ctAAATGAGGAGTGATACATTTAATACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004174 28 - 2193130 ctaaATGAGGAGTGATGCATTTAATACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075710 28 - 77216781 ctaaATGAGGAGCGGTGCATTTAATACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27987973 28 - 80997621 ctaaATGAGGAGTGGTGCATTTAATACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045687 28 + 10377808 ctaaATGAGGAGTGGTGCATTTAATACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930629 28 - 8458610 ctAAATGAGGAGTGGTGCATTTAATACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886147 28 + 75148670 ctaaATGAGGAGTGGTGCATTTAATACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115666 28 + 4244037 ctAAATGAGGAGTGGTGCATTTAATACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138047 28 + 4569836 ctaaATGAGGAGTGGTACATTTAATACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110055 28 - 159171411 ttAGATGAGGAGTGGTGCATGGAATACA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1820655 28 + 3513951 CTAGATGAGGAGTGGTGGATGGAATACA i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986040 28 - 7032639 ctAGATGAGGAGTGGTGCATGGAATACA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22801798 28 + 28711273 CTAAATGAGACTCGGTGCATGGAATATG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22069601 28 - 122082543 CTAAATAGAAAGTGTTATATTTAGCATG i mm10.chr11 C 0 C 0 s canFam3.chr9 21416731 28 + 61074082 TTAAATGAGGAGGAGTACTCCAGGGGTA i canFam3.chr9 C 0 I 9 s dasNov3.JH570468 395174 27 - 852752 TTAAATGAGGAGAAACACACTGACTAA- i dasNov3.JH570468 I 123 C 0 e micMur3.chr16 35902801 163 - 65901067 I e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=6273954.000000 s hg38.chr17_GL383564v2_alt 92829 453 + 133151 AAGAGCAGAGGGAAGTCATGGGCTTGAAAGTAG-TTTGTAAAAAGTGGAGTATACAAATTAGTCATTGAATATAGATCCTGGTTAGTGACAGGATCAGAGGGAA-CAAAGTTTCTTGAAAGCTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAAATTTTGCCCTTTCTCCATCAGGAGGTTAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCACTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGGACCCGAG-G--CCCCCCAGGGCCCCGGAGGCAGGGTCTGATCCT---TTCTCCCCTTGG- s panTro5.chr17 16279414 453 + 83181570 AAGAGCAGAGGGAAGTCATGGGCTTGAAAGTTG-TTTGTAAAAAGTGGAGTATACAAATTAGTTATTGAATATAGATCCTGGTTAGTGACAGGATCAGAGGGAA-CAAAGTTTCTTGAAAGCTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAAATTTTGCCCTTTCTCCATCAGGAGGTTAACACTCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGTCCACTCAGGACCCGAG-G--CCCCCCAGGGGCCCGGAGGCAGGGTCTGATCCT---TTCTCCCCTTGG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16186858 453 + 83442489 AAGAGCAGAGGGAAGTCATGGGCTTGAAAGTCG-TTTGTAAAAAGTGGAGTATACAAATTAGTTATTGAATATAGATCCTGGTTAGTGACAGGATCAGAGGGAA-CAAAGTTTCTTGAAAGCTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAAATTTTGCCCTTTCTCCATCAGGAGGTTAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGTCCACTCAGGACCCGAG-G--CCCCCCAGGGGCCCGGAGGCAGGGTCTGATCCT---TTCTCCCCTTGG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4021888 454 + 4267968 AAGAGCAGAGAGAAGTCATGGGCTTGAAAGTAGTTTTGTAAAAAGTGGAGTACACAAATTAGTCATTGAATATAGATCCTGGTTAGTGACAGGATCAGAGGGAA-CAAAGTTTCTTGAAAGCTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAAATTTTGCCCTTTCTCCATCAGGAGGTTAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTTGCCACGCAGGTGGGCA--TCTAAGCATGTGGCCACTCAGGACCCGAG-G--TCCCCCAGGGCCCCGGAGGCAGGGTCTGATCCT---TTCTCCCCTTGG- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004202 453 - 2193130 AAGAGCAGAGAGAAGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATACAAATTAGTCATTGAATCTAGATCCTGGTTAATGACAGGATCAGAGGGAA-CAAAGTTTCTTGAAAGCTTGAGAATGAT---------CAGAAGTTGAATTGCGGTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAAATTTTGCCCTTTCTCCATCAGGAGGTTAATACCCTGCGCTGCCAGCTTGGAGACCGCCTCAATGTGGAGGTGGACGCTGCCCCCGCTGTGGATCTGAACCAGGTCCTGAACGAGACCAGGAGTCAATATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTTGCCACTCAGGACCCGAG-G--TGCCCCAGGGCCCTGGAGACAGAGTCTGATCCT---TTCCCCACTTGG- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30075738 453 - 77216781 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATACAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAGGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGACCCTTTGTGAAATTTAAACTTTTGCCCTTTCTCAATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAG-G--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCTACTTGG- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988001 453 - 80997621 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATACAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAGGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAACTTTTGCCCTTTCTCAATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAG-G--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCTACTTGG- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2045715 453 + 10377808 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATACAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAGGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAACTTTTGCCCTTTCTCAATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAATGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAG-G--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCTACTTGG- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1930657 453 - 8458610 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATACAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAAGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTAAGAATGAT---------CAGAAGTTGAATTGTATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAACTTTTGCCCTTTCTCAATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTAGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTAAACGAGACCAGGAGTCAATATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTTGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAG-G--TGCCCCCGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCCACTTGG- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886175 453 + 75148670 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATACAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAGGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTACGAATGAT---------CAGAAGTTGAATTGCTTTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAACTTTTGCCCTTTCTCAATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGATGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAATATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCGCTCAGGACCCGAG-G--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCTACTTGG- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2115694 453 + 4244037 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGTAGTATACAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAAGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTAAGAATGAT---------CAGAAGTTGAATTGTATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAACTTAAACTTTTGCCCTTTCTCAATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTAAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACATGGCCACTCAGGACCCGAG-G--TGACCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCCACTTGG- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138075 453 + 4569836 AAGGGCAGAGAGAGGTCATGAGCTTGAAAGTAC-TTTGTAAAAAGTGGAGTATGCAGATTAGTCATTGAATATAGATCCTGGTTAATGAGAGGATCAGAGGGAA-CAAAGTTTCCTGAAAACTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCACCAAGATCCTTTGTGAAATTTAAACTTTTGCCCTTTCTCAATCAGGAAGTCAACACCCTGCGCTGTCAGCTTGGAGACCGCCTCAATGTAGAGGTGGACGCTGCCCCTGCTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAAACCAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGGTGGGCA--TCTAAGCACGTGGCCACTCAGGACCCGAG-G--TGCCCCAGGGCCCTGGAGGCAGGGTCTGATCCT---TTCCCCACTTGG- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110083 455 - 159171411 AAGAGCAGAGAGAGGTCATGGGCTTGAAAGTAC-TCTGTAAAAAGTGGAGTATGCAGATTAGTCATTGAATATAGATCCTGGTTAATGGGAGAATCAGAGGGAA-AAAAATTTCTTGAAAGCTTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCAGCAATATCCTTTGTGAGATTTAAAATGTTGCCCTTTCTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAACCAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGCAGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGTACGTGGCCACTCAGGATCTGAG-GACCACCCCAGGACCCTGGAGTCAGGGTCTGATCCT---TTCTCCCCGTGG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1820683 456 + 3513951 AAGAGCAGAGAGAGATCCTGGGCTTGAGAGTAC-TTTGTAAAAAGTGAAGCATGCAGATTAGTCATTGAATATGGATCCTGGTTAATGAGAGGATCAGAGAGAACAAAAATTTCTTGAAAACCTAAGAATGAT---------CAGAAGTTGAATTGCATTCTCTTA-AG----GAGAGCAGCAAGATCCTTTGTGGGATTTAAAATGTTGCCCTTTCTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTGGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCGCTGTGGACCTCAACCAGGTCCTGAACCAGACCAGGAGTCAGTACGAGGCCTTGGTGGACACCAACCGCAGGGAAGTGGAGCAGTGGTTCGCCACGCAGGTGAGCA--TCTAAGCACGCAGTCACTCAGGACCCGAG-GACCACCCCAGGGCCCCGGAGGCAGGGGCTGATCCT---TTCTCCCCTTGG- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986068 455 - 7032639 AAGAGCAGAGAGAGGTCATGGGCTTGAAAGTAC-TTTGTAAAAAGTGGGTTATGCAGATTAGTCATTGAATATAGATCCTGATTAATGAGAGAATCAGAGGGAA-CAAAATTTCTTGAAAGCTTAAGAATGAT---------CAGAAGTTGAATTGCATTCCCTTA-AG----GAGAGCAGCAAGATCCTTCGTGAGATTTAAAATGTTGCCCTTTCTCCATCAGGAGGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCTGCTGTGGACCTCAACCAGGTCCTGAACCAGACCAGGAGTCAGTATGAGGCCCTGGTGGACACCAACCGCAGGGAAGTGGAGCAGTGGTTTGCCACGCAGGTGAGCA--TCTAAGTACGTGGCCACTCAGGACCCGAG-GACCACCCCAGGGCCCCAGAGGCAGGGTCTGATCCT---TTCTCCCCTTGG- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35902964 457 - 65901067 GAGGGCAGACGGAGGTCACAGACTTGAAAGCAC-TTTGT--AAAGTGGACTACTCGGATTAGTCACCGAATATAGAACCTGGTTAACGAGAGGATCAGAGGAAA-CGAAGCTTGCTGAACACTTAAGAATGAA---------CAGAAGCTG-GCTGCATTCTCTCA-AGGAGAGAGAGCACTGGTGTCCTCTGTGAAATTTTAACTTTTGCTCTTTCTCCATCAGGAAGTCAACACCCTGCGCTGCCAGATCGGAGACCGCCTCAACGTGGAGGTGGACGCTGCCCCCACCGTGGACCTGAACCAGGTGCTGAACGAGACCAGGAGCCAGTACGAGGCCCTGGTGGAGACCAACCGCAGGGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGTGTCTCTCAGCATGTGACCACTCAG--CCCCAG-A--CCCCTCAGGGCCCTCGAGGCAGGGTGTGATCCTGCGTCCTCCCCTTGC- i micMur3.chr16 I 163 C 0 s otoGar3.GL873537 22801826 454 + 28711273 GAGAGCAGAGAGAGGTCACAGATATGAAAGCAC-TTTGT--GAAGTGGAATACACAGATTAGTCACTGAGCGTAGAACCTGACTAATGAGAGGTTCTGAGGAAA-TG-AGCTTGTTGAAAGCTTAAGAATAAG---------CAGAAGTTGAACTGCATTCTCTTA-AG----GAGAGCACCAGCAGCCTTTGTGAAATTGTAAATGTTGCCCTTTCTCCATCAGGAAGTCAACACTCTGCGCTGCCAGCTTGGAGATCGCCTCAACGTGGAGGTGGACGCTGCCCCGACTGTGGACCTGAACCGGGTTCTAAATGAGACCAGGTGTCAATACGAGGCCCTGGTGGACACCAACCGCAGGGAAGTGGAGGAATGGTTCACCAGGCAGGTGGGCA--TCTAAGTATGTGGCCACTCAGGCCTCCAGTA--CCCCCCAGGACCCCCAAGGCAGGACCTGATCCCATTTCCTCCCCTTGG- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22069629 441 - 122082543 AAGGGCAGAGTGGGGT-ATGGGCTTGAAGGTGC-TTTGAGAAAGG------AATCAGTTTA-TCACTGACCACAGGG-------AAAAGGATGCTGGGAAGGAA-CAGAA-----TGGAGACTGTAGAAGGATTCAGCGCACCAGATGCCCAAAAGCATCCTCTCA-AG----GAGAGCATCAAGATCCATTGTGATGTTTTGAATTTTCCCTTTCCCCTGCCAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAACGTGGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTACTCAACGAGACCAGGTGTCAGTACGAGGCCCTGGTGGAAACCAACCGCCGGGAAGTGGAGGAATGGTACACCACACAGGTGGGCA--TCTGAGCCCATGGTAACTCAGGAACCGAG-T----CCCCAGGACTGT-AAGGCAGGGTCTGATCCTGT-CCCTCCCCTTGC- i mm10.chr11 C 0 C 0 s canFam3.chr9 21416768 450 + 61074082 AGGGGTGGAAAGAGTTCATGGGTGTGAAAGCAC-TTTGC--AAAGTGAAATACACAGGTTGGTCACTGATTATAGAACACAGTTA-TAAGAGGATCTGATGGAA-CAGAGCTT--TGAAAGCTTAAGAATGAT---------TACAAGCTGATCTGTGCTTTTATA-A-----GAGAGCATCCGAACACTCTGTGATACTTCGCATCTTCCCCTTCCTCCCTCAGGAAGTCAACATCTTGCGCTGCCAGATTGGAGACCGCCTCAACGTGGAGGTGGATGCAGCCCCAACCGTGGACCTGAACCGTGTGCTCAACGAGACCAGGAGTCAGTATGAGGCCCTGGTGGAGACCAACCGCAGGGACGTGGAGGAATGGTTCACCACCCAGGTGGGCA--TCTCAGCACGTGGCCACTCAGGACCCTTG-G--CCCCTCGGGACCCTTGAGGCAAGGTCTGACCCTGTCTTCTCCCCTGTG- i canFam3.chr9 I 9 C 0 s dasNov3.JH570468 395201 453 - 852752 GAAAGATGGAAGAAATCATGGATTTGGAAGCAC-TTTGT--AAAGTGGACTATACAGACTATGCATTAAATGCAGAACACAGTTAATGAAAGGATCAGAGGGAA-CAGGGCTTGTTGAAAGCTCAAG--TTAT---------CAGAAGTTGAATTGCGTTTTCTTAGAG----GTAGGCATCAGGATCCTTTGTGATATTTTATATTTTGCCCTTGCTCCATCAGGAAGCCAACTCCCTGCGTAGCCAGATTGGAGACCGCCTCAATGTGGAGGTGGACGCGGCGCCCACCGTGGACCTGAACCGTGTGCTGAACGAGACCAGGTGCCAGTACGAGGCCCTGGTGGAGACCAACCGCAGGGACGTGGAGGAGTGGTTCATCATGCAGGTGGGTG--CCTAGGTGCATGGCCATGCAGGA-CTGTG-G--CCCCTTGGGGCCCTGGAGGCAGCACCTGATCCTGGCTTCTCCCCTTTGG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=2517810.000000 s hg38.chr17_GL383564v2_alt 93282 138 + 133151 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG s panTro5.chr17 16279867 138 + 83181570 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGTGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16187311 138 + 83442489 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGTGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022342 138 + 4267968 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGAACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004655 138 - 2193130 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCTCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATAGAGCTACAGGCCCAGCACAACCTGG---TG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076191 141 - 77216781 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988454 141 - 80997621 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046168 141 + 10377808 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931110 141 - 8458610 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAACTGCAGTCCTACCAGGCGGAGATCATTGAACTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTATTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886628 138 + 75148670 GTGTTTCAGACTGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116147 141 + 4244037 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGGTATTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138528 138 + 4569836 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTATCCAGCGCAGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110538 138 - 159171411 GTGTTACAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACTTGG---TG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821139 138 + 3513951 GTGTTTCAGACCGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986523 138 - 7032639 GTGTTTCAGACCAAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTACCAGGCGGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903421 138 - 65901067 GTGTTTCAGACCGAGGAGCTGAGCAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGCGCCGCACGGTCAACGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2882465 138 + 8555354 GTGTTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCCGAGCAGCTGCAGTCCTGCCAGGCAGAGATTGTCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAGCATGG---TG i proCoq1.NW_012135969v1 N 0 I 68054 s otoGar3.GL873537 22802280 138 + 28711273 ATTTTACAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACAGTCAATGCCCTGGAGATTGAGCTTCAGGCCCAGCACAACCTGG---TG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070070 138 - 122082543 CTATTGCAGACAGAGGAGTTGAACAAGCAGGTGGTGTCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCCGAGATCATCGAGCTGAGACGCACAGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCATGAACTGG---TG i mm10.chr11 C 0 C 0 s canFam3.chr9 21417218 138 + 61074082 CTATTTCAGACTGAGGAGCTGAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGCACGGTCAACGCCTTGGAGATCGAGCTCCAGGCCCAGCACAACCTGG---TG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 395654 138 - 852752 ACATTTCAGACCGAGGAGCTCAACAAGCAGGTGGTGTCCAGCTCGGAGCAGCTGCAGTCCTCCCAGGCTGAGATCATCGAGCTGAGACGCACGGTCAATGCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGG---TG i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=2229837.000000 s hg38.chr17_GL383564v2_alt 93420 181 + 133151 TGTATTGTTCAGACCTGC----TGGTGAGCG-ATGGGAAC-----------------TTGGGAGGCAGAGTCTTGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-AAGGAGCAGCTCTCTGACACTCTCAAT--------CTTCCCCACCACAGCGAGACTCT s panTro5.chr17 16280005 181 + 83181570 TGTATTGTTCAGACCTGC----TGGTGAGCG-ATGGGAAC-----------------TTGGGAGGCAGAGTCTTGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-AAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16187449 181 + 83442489 TGTATTGTTCAGACCTGC----TGGTGAGCG-ATGGGAAC-----------------TTGGGAGGCAGAGTCTTGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-AAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022480 181 + 4267968 TGTATTGTTCAGACCTGC----TGGTGAGCG-ATGGGAAC-----------------TTGGGAGGCAGAGTCTTGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-AAGGAGCAGCTCTCTGACACTCTCGAT--------CTTCCCCACCACAGCGAGACTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004793 181 - 2193130 TGTATTGTTCAGACCTGC----TGGTGAGCG-ATGGGAAG-----------------TTGGAAGGCAGAGTCCCGGGGATGTGCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-TT-AAGGAGCAGCTCTCTGACACTCTTGAT--------CTTCCCCACCACAGCGAGACTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076332 181 - 77216781 TGTATTGTTCTGACCTGC----TGGTGAGCG-ATGGGAAG-----------------TTGGGAGGCAGAGTCTCGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988595 181 - 80997621 TGTATTGTTCTGACCTGC----TGGTGAGCG-ATGGGAAG-----------------TTGGGAGGCAGAGTCTCGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046309 177 + 10377808 TGTATTGTTCTGACCTGC----TGGTGAGCG-ATGGGAAG-----------------TTGGGAGGCAGAGTCTCGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCC------------CTTCCCCCACACAGCGAGACTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931251 180 - 8458610 TGTATTGTTCTGACCTGC----TGGTGAGCG-ATGGGAAA-----------------TTGGGAGGCAGAGTCCCAGGGATG-CCTTGGGGCCAC--------------------------------------------ACACTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886766 181 + 75148670 TGTATTGTTCAGCCCTGC----TGGTGAGCG-ATGGGAAG-----------------TTGGGAGGCAGAGTCTCGGGGATGCCCTTGGGGCCAC--------------------------------------------ACATTCTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAAGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116288 181 + 4244037 TGTATTGTTCTGACCTGC----TGGTGAGCG-ATGGGAAG-----------------TTGGGAGGCAGAGTCCCGGGGATGCCCCTGGGGCCAC--------------------------------------------ACGCTTTCCTTAGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138666 181 + 4569836 TGTATTGTTCAGCCCTGC----TGGTGAGCG-ATGAGAAG-----------------TTGGGAGGCAGAGTCCTGGGGATGCCCTTGGGGCCAC--------------------------------------------ACACTCTCCTTTGCTCTTGGAGCTTGTGAGTTCTTTGGAACCCCATGGAGGAAC-CTT-AT-TAGGAGCAGCTCTCTGACATTCTTGAT--------CTTCCCCACCACAGCGAGACTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110676 181 - 159171411 TGTATTGTTCAGCCCTGC----TGGTGAGCG-ATGGGACG-----------------TTGGGAGGCAGAGTCCCAGGGCTGCCCTTGGGACCAC--------------------------------------------ACGCTCTCCTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAAGGCTT-TG-AAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821277 181 + 3513951 TGTCTTGTTCAGCCCTGC----TGGTGAGCG-ATGGGACG-----------------TTGGGAGGCAGAGTCCCGGGACTGCCCTTGGGACCAC--------------------------------------------ACGCTCTCCTTAGCTCTTGGAGC-TGTGACTTCCTTGGAGTCCTATGAAGGAAGGCTT-TG-AAGGAGCAGCTCTCTGACATTCCTGAT--------CTTCCCCACCACAGCGAGACTCC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986661 181 - 7032639 TGTATTGTTCAGCCCTGC----TGGTGAGTG-ATGGGATG-----------------TTGGGAGGCAGAGTCCTGGGGCTGCCCTTGGGACCAC--------------------------------------------ACGCTCTCCTTAGCTCTTGGAGC-TGTGACTTCCTTGGAATCCTATGAAGAAATGCTT-TG-AAAGATCAGCCCTCTGACATTCCTGAT--------CTTCCTCACCACAGCGAGACTCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903559 179 - 65901067 TGTGCTGCTCTGGCCTGC----TGGGGAGCC-GGGGCAGC-----------------CGGGGAGGTGGGGTCACGGGGATGCCCTTTGGGCCAC--------------------------------------------AGGCTCTCCTTAG-TGTTGGATCTTGTGAAGTCTTTGGACTACCATGGAGACAC-CCT-TT-AAGGAGCAGCTGTCTGACACGCTTTAT---------GTCCCCCTGACAGAGAAACTCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2950657 181 + 8555354 TGTGCTGCTCAGACCTGC----TGGAGAGCCAGGGGGAGG-----------------CGGGGAGGCGGAGTCACGGGGATGCCCTTTGGGCCAC--------------------------------------------ACGCTCTCCTTAG-TCTTGGATCTGGTGAAGTCTTTGGACCTCCATGGAGAAAC-CCT-TTAAAGGAGCAGCTCTCTGACATGCTTCAT---------CTCCCTCTCACAGAGAAACTCT i proCoq1.NW_012135969v1 I 68054 T 67718 s otoGar3.GL873537 22802418 206 + 28711273 AGTGTGGCTCAGACCTGC----TGGAGAACA-GGGATAGGTCAGGGAGGTTGGGTCATGGGGAGGTGGAGTCACAGGGATGGCCTCTGGGGCAC--------------------------------------------ACAGTCTCCTTAGCTCTGGGATCTTGGGACTTCTTTGGAACCCCATGGGAAAAC-CCT-GT-AAGGAGCAGCTCTCTGATATTCTGTATTTGTTCCCCATCCATCCTCCAGAGAAACTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070208 224 - 122082543 TGTAGTGTCTAGA-CTGC----TGCTGAGCA-GTGTGGAG-----------------TTGGGAGGCAGAGTCACTGGGGTGTCCTTGGGGCTtctctgtctctgtctctgtctctgtctctgtctctgtctctgtctgtctctctTCTTAGCTCTTGAAGCCTGTGACTTCTCTGGAAGTC-ATGCAGAAAC-CTTCAG-AGGGAACAGCTCTGTGACAGCCTTTGT--------CTTCTCCCCCACAGAGAAACTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21417356 130 + 61074082 GGTGTTGTTC----------------------AGGGTAAC----------------------------------------GCCC------------------------------------------------------ATGATTTCCTGAACCCGTGAAGCCTGTGACTTCTCTGAAACCCCATGGAGAAGC-CCT-CT-GGGGAGTGACTCTGTGATATTCTTTGT--------CTTCCCCA-CACAGAGGGACTCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 395792 183 - 852752 TGTGTGACTCAGACCTGCCCTGCGGTGGGAA-GGGCCGGG-----------------TGGGGGACGGGAGTCCCGGGCATCCCCTGGGGACCAG--------------------------------------------GCACTCTCCTTGAC-CTGGATGCTTGTGGCTTCTTTGGAACCACGTAGAGAAAG-GCT-TA-GAGGAGCCCCTCCCTGATGCCCTTCAT---------GTTCCCACCACAGAGAAACTCC i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=278199.000000 s hg38.chr17_GL383564v2_alt 93601 18 + 133151 CTGGAAAACACGCTGACA s panTro5.chr17 16280186 18 + 83181570 CTGGAAAACACGCTGACG i panTro5.chr17 C 0 I 2578 s panPan2.chr17 16187630 18 + 83442489 CTGGAAAACACGCTGACG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022661 18 + 4267968 CTGGAAAACACGCTGACG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004974 18 - 2193130 CTGGAAAACACGCTGACG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076513 18 - 77216781 CTTGAAAACACACTGACG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988776 18 - 80997621 CTGGAAAACACACTGACG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046486 17 + 10377808 CTGGAAAA-ACACTGACG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931431 18 - 8458610 CTGGAAAACACACTGACG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886947 18 + 75148670 CTGGAAAACACGCTGACG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116469 18 + 4244037 CTGGAAAACACACTGACG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138847 18 + 4569836 CTGGAAAACACACTGACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110857 18 - 159171411 CTGGAAAACACGCTGACG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821458 18 + 3513951 CTGGAAAACACACTGACG i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986842 18 - 7032639 CTGGAAAACACGCTGACG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903738 18 - 65901067 CTGGAAAACACGCTGACG i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22802624 18 + 28711273 CTGGAAAACACGCTGACG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070432 18 - 122082543 CTGGAGAACACCCTGACA i mm10.chr11 C 0 C 0 s canFam3.chr9 21417486 18 + 61074082 CTGGAGAACACGCTGACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 395975 18 - 852752 CTGGAAAACACGCTGAAC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2950838 67718 + 8555354 T e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=94042.000000 s hg38.chr17_GL383564v2_alt 93619 6 + 133151 GAGAGC s panTro5.chr17 16282782 6 + 83181570 GAGAGC i panTro5.chr17 I 2578 C 0 s panPan2.chr17 16187648 6 + 83442489 GAGAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022679 6 + 4267968 GAGAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004992 6 - 2193130 GAGAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076531 6 - 77216781 GAGAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988794 6 - 80997621 GAGAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046503 6 + 10377808 GAGAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931449 6 - 8458610 GAGAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886965 6 + 75148670 GAGAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116487 6 + 4244037 GAGAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138865 6 + 4569836 GAGAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110875 6 - 159171411 GAGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821476 6 + 3513951 GAGAGC i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986860 6 - 7032639 GAGAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903756 6 - 65901067 GAGAGC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22802642 6 + 28711273 GAGAGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070450 6 - 122082543 GAGAGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21417504 6 + 61074082 GAGACT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 395993 6 - 852752 GAGACC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2950838 67718 + 8555354 T e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=304009.000000 s hg38.chr17_GL383564v2_alt 93625 16 + 133151 GAGGCCCGCTACAGCT s panTro5.chr17 16282788 16 + 83181570 GAGGCCCGCTACAGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16187654 16 + 83442489 GAGGCCCGCTACAGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022685 16 + 4267968 GAGGCCCGCTACAGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2004998 16 - 2193130 GAGGCCCGCTACAGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076537 16 - 77216781 GAGGCCCGCTACAGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988800 16 - 80997621 GAGGCCCGCTACAGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046509 16 + 10377808 GAGGCCCGCTACAGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931455 16 - 8458610 GAGGCCCGCTACAGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886971 16 + 75148670 GAGGCCCGCTACAGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116493 16 + 4244037 GAGGCCCGCTACAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138871 16 + 4569836 GAGGCCCGCTACAGCG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110881 16 - 159171411 GAGGCCCGCTACAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821482 16 + 3513951 GAGGCCCGCTACAGCT i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6986866 16 - 7032639 GAGGCCCGCTACAGCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903762 16 - 65901067 GAGGCCCGCTACAGCT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2883120 16 + 8555354 GAGGCCCGCTATGGCA i proCoq1.NW_012135969v1 T 67718 C 0 s otoGar3.GL873537 22802648 16 + 28711273 GAAGCCCGCTACAGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070456 16 - 122082543 GAGGCTCGCTACAGCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21417510 16 + 61074082 GAGGCACGCTACAGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 395999 16 - 852752 GAGGCCCGCTACAGCT i dasNov3.JH570468 C 0 C 0 e cebCap1.NW_016107730v1 1866212 3830 + 1920343 M a score=2175595.000000 s hg38.chr17_GL383564v2_alt 93641 116 + 133151 CCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCG s panTro5.chr17 16282804 116 + 83181570 CCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16187670 116 + 83442489 CCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022701 116 + 4267968 CCCAGCTGTCCCAGGTGCAGAGACTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGGGCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2005014 116 - 2193130 CCCAGCTGTCCCAGGTGCAGAGACTGATCACCAATGTGGAGTCCCAGCTGGCGGAGATCCGCAGTGACCTGGAGCGGCAGAACCAGGAGTATCAGGTGCTGCTGGACGTGCGTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076553 116 - 77216781 CCCAGCTGTCCCAGTTACAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988816 116 - 80997621 CCCAGCTGTCCCAGTTACAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTGCGTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046525 113 + 10377808 CCCAGCTGTCCCAGTTACAGGG-CTGATCACCAATGTGGAGT--CAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931471 116 - 8458610 CCCAGCTGTCCCAGTTACAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64886987 116 + 75148670 CCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116509 116 + 4244037 CCCAGCTGTCCCAGTTACAGAGCCTGATCACCAATGTGGAGTCGCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2138887 116 + 4569836 CCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCCCAGCTGGCGGAGATCCTCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46110897 116 - 159171411 CCCAGCTGGCCCAGGTGCAGTGCCTGATCAACAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821498 116 + 3513951 CCCAGCTGTCCCAGGTGCAGAGCATGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1870042 116 + 1920343 CCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAATGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i cebCap1.NW_016107730v1 M 3830 C 0 s aotNan1.NW_018502359v1 6986882 116 - 7032639 CCCAGCTGTCCCAGGTGCAGAGCCTGATCAGCAACGTGGAGTCCCAGCTGGCGGAGATCCGCGGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903778 116 - 65901067 CCCAGCTGTCCCAGGTGCAGTGCATGATCACCAACGTGGAGTCTCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2883136 116 + 8555354 CCCAGCTGTCGCAGGTGCAGTGCATGATCACCAGCGTGGAGTCCCAGTTGGCTGAGATCCGGGCCAACTTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTCCGGGCC i proCoq1.NW_012135969v1 C 0 N 0 s otoGar3.GL873537 22802664 116 + 28711273 CCCAGCTGGCCCAGGTGCAGTGCATGGTGACCAATGTGGAGGCCCAGCTGGCGGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGGGCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070472 116 - 122082543 CCCAGCTGTCCCAGGTGCAGTGCCTGATCACCAATGTGGAGTCCCAGCTTGGTGAGATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAAGTGCTGCTGGACATTCGGTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21417526 116 + 61074082 CTCAGCTGAACCAGGTGCAGTGCATGATCACCAACGTGGAGTCCCAGCTTGCTGAGATCAGGTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGATGTCAAGGCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 396015 116 - 852752 CCCAGCTGGCCCAGGTGCAGTGCCTGATCAGCAGCGTGGAGTCCCAGCTGGCGGAGATCCGGGGCGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTACTGGACGTCCGGGCC i dasNov3.JH570468 C 0 C 0 a score=9643331.000000 s hg38.chr17_GL383564v2_alt 93757 611 + 133151 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTCTCCTTGGGG-CATGTTAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCAAGCTTTTGTTTGGAGGAAGTCCAAGGAGGAACAATATTCTTACACAAAGCCCTTTTAGTATTTTCCAATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCGCCACAACCAATGCATGTGACAAGTCCACTGGGCCCTGTATCTCTAATCCCTGTGGCCTACGTGCTCGGTGTGGGCCTTGCAACACATTTGGGTACTAGAGGCCCCACAACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGACCACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAACCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT s panTro5.chr17 16282920 611 + 83181570 CGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTCTCCTTGGGG-CATGTTAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCAAGCTTTTGTTTGGAGGAAGTCCAAGGAGGAACAATATTCTTACACAAAGCCCTTTTAGTATTTTCCAATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCGCCACAACCAATGCATGTGACAAGTCCACTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACATTTGGGTACTAGAGGCCCCACGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGACCACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAACCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16187786 611 + 83442489 CGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGTGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTCTCCTTGGGG-CATGTTAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCAAGCTTTTGTTTGGAGGAAGTCCAAGGAGGAACAATATTCTTACACAAAGCCCTTTTAGTATTTTCCAATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCGCCACAACCAATGCATGTGACAAGTCCACTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACATTTGGGTACTAGAGGCCCCACGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGACCACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAACCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4022817 611 + 4267968 CGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTCTCCTTGGGG-CATGTTAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCAAGCTTTTGTTTGGAGGAAGTCCAAGGAGGAACAATATTCTTACACAAAGCCCTTTTAGTATTTTCCAATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCGCCACAACCAATGCATGTGACAAGTCCACTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACATTTGGGTACTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGACCACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAACCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGAACTACAGCAGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2005130 611 - 2193130 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGTGAGGACTGCAAGTGAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCAAGCTTTTGTTTGGAGGAAGTCCAAGGAAGAACAATATTCTTACACAAAGCCCTTTTAGTATTTTCCAATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCACCACAACCAATGCATGTGACAAGTCCACTGGGCCCTGTATCTCTAATCCCTGTGGCCTACGTGCTCGGTGCGGGCCTTGCAACACATTTGGGTACTAGAGGCCCCACGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGACCACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAGCCCTGGCTTCCAGGGGTCAACTCTAGC-CTTCCACTGTATTCTCTGGCTTGATTCTTCAGCAT---AAG-C--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30076669 610 - 77216781 CGGCTAGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGAT-GAAATGAATTTATAATTTCGAGCTTTTGTTTGGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCAGTCTCTTCAGCTCATTATAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGTGCCACCACAAATGCATGTGACAAGTCCATTGGACCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAAC-CTCCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27988932 609 - 80997621 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGAT-GAAATGAATTTATAATTTCGAGCTTTTGTTTGGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCAGTCTCTTCAGCTCATTATAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGTGCCACAACAAATGCATGTGACAAGTCCATTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAA-CT-TTCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAAC-CTCCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2046638 609 + 10377808 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGAT-GAAATGAATTTATAATTTCGAGCTTTTGTTTGGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCAGTCTCTTCAGCTCATTATAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGTGCCACAACAAATGCATGTGACAAGTCCATTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCATACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAA-CT-TTCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAAC-CTCCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1931587 610 - 8458610 CGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGGATAGTCTTCTTGAT-GAAATGAATTTATAATTTCGAGCTTTTGTTTAGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCAATCTCTTCAGCTCATTATAC-------TCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCGCCACAACAAATGCATGTGACAAGTCCATTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAGCCCTGTCTTCCAGGGGTCAGCTCTAGC-CTCCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64887103 611 + 75148670 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCGAGCTTTTGTTTGGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCCATCTCTTCAGCTCATTATAC-------TCTAACTTGCTCCAATGATTTTCTGCCCATAGGCTCCCCTCCAACCCCTGCGCCACAACAAATGCATGTGACAAGTCCATTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCGGGAGGAGAAGAAAGACATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAGC-CTCCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACACAGAGAGACCTACAGCAGGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2116625 610 + 4244037 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGGATAGTCTTCTTGAT-GAAATGAATTTATAATTTCGAGCTTTTGTTTGGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCAATCTCTTCAGCTCATTATAC-------TCTAACTTGCTTCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCGCCACAACAAATGCATGTGACAAGTCCACTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAGC-CTCCCACTGTATTCCCTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139003 618 + 4569836 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGCGAGGACTGCAAGTCAGTATGGGGGTAGTAATC-TTTTCCTTGGGG-CGTGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGGAAATGAATTTATAATTTCAAGCTTTTGTTTGGAGGCAGTCCAAAGGAGAACAATATTCTTATACAAAGCCCTTTTATTATTTTCCAATCTCTTCAGCTCATTATACTCTAACTTCTAACTTGCTCCAATGATTTTCTGCCCACAGGCTCCCCTCCAACCCCTGCACCACAACAAATGCATGTGACAAGTCCATTGGGCCCTGTATCTCTAATCCCTGTGGCCCACGTGCTCGGTGCGGGCCTTGCAACACTTTTGGGTGCTAGAGGCCCCATGACCAGGAGGAGAAGAAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAATATCTCCAACAGTGAACACACTTTGGAAAGAGGCAGAAACCT-TTCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCTTGGCTTGATTCTTCAGCAT---AAG-G--CTGCAAA--------ATCTGTCTTCTGAGTCACATAGAGAGACCTACAGCAGGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111013 609 - 159171411 CGGCTGGAGTGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGTGAGGACTGCAAGTGAGTGTGGGGCTAGTAATTATTTTCCTTGGGG-CATGTGAGGTTGCTATGGAGATGAATAGTCTTCTTGATGAAAATAAATTTATAATTTCAAGTTTTTGTTTGGAGGCAGTCCAAAGAAGAACAATATTCTTATACAAAGCCCTTTTAGTATTTTCCTATCTCTTTAGCTCATTTTAC-------TCTAAGTTGATGCGATGATTTTCTGTCCACAGGCTCCCCTGCAACCCCTGTGCCACAACCAATGCATGTGAAAAGCCCATAGGGCCCTGTATCTCGAATCCCTGTGGCGCATGTGCTCGGTGTGGGCCTTGCAACACATTTGGGTGCTAGAGGGCCAACCCCCAGGAGGAGAAGGAAGGCATC--AGTCACACCTCAACTCTACTTCATCCCAACATCTCCAACAGTGACCATGCTTTGGAAAGAGGCGGAAGCCT-TCCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCCTGGCTTGATTGTCCAGCAG---AAG-G--CTGCAAA--------CTCTGTCTTCTGAGTCACAGAGCGAGACCTACAGCAG--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1821614 609 + 3513951 CGGCTGGAGTGTGAGATCAACACGTACCGGAGTCTGCTGGAGAGCGAGGACTGCAAGTGAGTGTGGGGCTAGTAATTATTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGAAAATAAATATATAATCTCAAGCTTTTGTTTGGAGGCAGTCCAAGGAAGAACAATATTCTTACACAAAGCCCTTTTAGTGTTTTCCTATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCCGTCCACAGGCTCCCCTGCAACCCCTGCACTACAACCAATGCATGTGACAAGCCCACAGGGCCCTGTATCTTGAATCCCTGTGGCGCACGTGCTCGGTGAGGGCCTTGCAACACATTTGGGTGCTAGAGGCCCGACCCCCAGGAGGAGAAGGAAGGCATC--AGCCACACCTCAACTCGACTTCATCCCAACATCTCCAACAGTGACCATGCTTTAGAAAGAGGCGGAAGCCT-TCCTATTAGCCCTGGCTTCCAGGGGTCAGCTGTAGC-CTTCCACTGTATTCCCTGGCTTGATTCTCCAGCAT---AAG-G--CTGCAAA--------CTCTGTCTTCTGAGTCGCAGAGAGAGACCTACAGCAG--- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1870158 609 + 1920343 CGGCTGGAATGTGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTGTGGGCCGAGTAATTATTTTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGAAAATAAATTTATAATTTCAAGGTTTTGTTTGGAGGCAGTCCAAGGAAGAACAATATTCTTACACAAAGCCCTTTTAGTATTTTCCTATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGATTTTCTGTCCACAGGCTCCCCTGCAACCCCTGTGCCACAACCAATGCATGTGACAAGCCCACAGGGCCCTGTATCTCGAATCCCTGTGGCGCACGTGCTCGGTGCGGGCCTTGCAACACATTTGGGCGCTAGAGGCCCGACCCCCAGGAGGAGAAGGAAGGCATC--AGTCACACCTCAACTCGACTTCATCCCAACATCTCTAACAGTGACCATGCCTTGGAAAGAGGTGGAAGCCT-TCCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTATTCCCTGGCTTGATTCTCCAGCAT---AAG-G--CTGCAAA--------CTCTGTCCTCTGAGTCACAGAGTGAGACCTACCGCAC--- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6986998 607 - 7032639 CGGCTGGAGTGCGAGATCAACACGTACCGGAGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTGTGGGGCTAGTAATTATTCTCCTTGGGG-CATGTGAGGTTGCTGTGGAGATGAATAGTCTTCTTGATGAAAATAAGTTTATAATTTCAAGGTTTTGTTTGGAGGCAGTCCGAGGAAGAATAATATTCTTACACAAAGCCCTTTTAGTATTTTCCTATCTCTTCAGCTCATTTTAC-------TCTAACTTGCTCCAATGACTTTCTGTCCACAGGCTCCCCTGCAACCCCTGTGCTACAACCAATGCATGTGACAAGCCCACAGGGCCCTGTATCTCGAATCCCTGTGGCGCACGTGCTCGGTACGGGCCTTGCAACACATTTGGATGCTAGAGACCCGACCCCCAGGAGGAGAAGGAAGGCATC--AGTCACACCTCAACTCGAC--CATCCCAACATCTCCAACAGTGACCATGCTTTGGAAAGAGGCGGAAGCCT-TCCTATCAGCCCTGGCTTCCAGGGGTCAGCTCTAGC-CTTCCACTGTGTTCCCTGGCTTGATTGTCCAGCAT---AAG-G--CTGCAGA--------CTCTGTCTTCTGAGTCACAGAGGGAGACTTACAGCAG--- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35903894 597 - 65901067 CGGCTGGAGTGCGAGATCAACACGTACCGGGGCCTGCTGGAGGGTGAAGACTGCAAGTGAGTTTAGGGCTGGCAATT-GTTTCCTTGGGA-CACATGAAGTTGTTGTGGGGCTGAATAGTGTTCTTGATGGAAATGAATTTATAATTCCAAGCTTTTTGTTGGAGACAGTCCAAAGAAG---GATATTCTTACACAAAGCACTTTTAGCATCTTCCTAACTCTTGAGCTCACGTTGC-------TCTA-----------TGGTTTTCTGTCCACAGGCTCCCTTGCAACCCCTGTGCTACAACCAATGCGTGTGACAAGCCCATTGGGCCCTGTGTCCCCAATCCCTGTGCCTCACGTACCTGGTGTGGGCCCTGCAACACCTTTGGGCGCTAGAAGCCCCACCGCCAGGAGGAGGAGAAGGGCATT--GGTCAC-ACCCCACTCAACTTCATCCCAACATCTCCAGCAGGGACCATGCTTTGGACAGAGGCAGAAATCT-TCCTATCAGCCTCGATCTCTGGTGGTCAGCTCTACC-TTTCCCCTGTGTTC-TTAGCTTGATCCTTCAGCAT---AAG-AGACTGCAAG--------ATCTGTCTTCTGCATCATGCAGAGAAACCTACAGCAGGAT i micMur3.chr16 C 0 I 31 s proCoq1.NW_012135969v1 2991590 600 + 8555354 CGGCTGGAGTGCGAGATCAACACGTACCGGGGCCTGCTGGAGAGTGAGGACTGCAAGTGAGTATGGGGCTGGCAATT-GTTTCCTTGGGA-CACATGAGGTTGCTGTGGGGCTGAATAGTTTTCTTGATGGAAATGAATTTATAATTCCAAGCTTTTTGTTGGAGACAGTCCGAGGAAGAACAATATTCTTAGACAAAGCACTTTAAGTATCTTCCTAGCTCTTCAGCTCACGTTAC-------TCTA-----------TGATTTTCTGCCCACAGGCTCCCTTGCAACCCCTGTGCTACAACCAATGCGTGTGACAAGCCCATTGGGCCCTGCGTCCCCAATCCCTGTGCGTCACGTGCCTGGTGTGGACCCTGTAACACCTTTGGGCGCTAGAGGCCCCACTGCCAGGAGGAGGAGAAGGTCATC--GGTCAC-ACCCAACTCACCTTCATCCCAACGTCTCCAGCAGGGACCACGCTTTGGACAGAGGCAGAAATCT-TCCTACCGGCCTCGGTCTCCGGGGGTCAGCTCCAGC-TTTCCCCTGTGTTC-TTAGCTCGATCCTTCAGCAC---AAG-ACACTGCAAA--------ATCTGTCTTCTGAGTCATGCAGAGAAACCTACAGCAGGAT i proCoq1.NW_012135969v1 N 0 I 31 s otoGar3.GL873537 22802780 587 + 28711273 CGGCTGGAGTGCGAGATCGAGACATACCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTGGGGGG-----------------GGGGG-CACATGTAGTTGTTACGGGGATGAACAGTTTTTTTGATGGAAATGAATTTATAGTTCCAAGCTTTTTGTTGGAGACAGC---AAGAAT---GAAACTTTTACACAGGGTGCTTTTAGTGTCTCCCTAGCTTGTCGGCTCATTTTAC-------TCTAACCTGCTGCTGTGATTTTCTGTCCTCAGGCTCCCTTGCAACCCCTGCGCCACAACCAATGCGTGTGACAAGCCCATTGGGCCTTGTGTCTCCAATCCCTGCACCCCACGTGTCCGGTGTGGGCCCTGCAACACCTTTGTGTGCTAGAGGCCCCACTGCCAGGAAGAGGAGAAGGGCATC--ACTCACTCCCCAACTCAACTTCATCCTGACCTCTCCAACAGGCACCCCTCTTTGGACAGAGGCAGAAACAT-TTCTTGCAGCCCCAGCTTCCAGAGATCAGCTCTCAC-TTTCCCCTGTACTC-TTAGCATGATTTTTCAGCCT---AAG-AGTCTGCAAA--------ATACACCTTCTGAGTCACACAGGGAAACACACAACAG--- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22070588 543 - 122082543 CGTCTGGAGTGTGAGATCAACACGTACAGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGTATGGCTGCATGA--C-TTTTCCTTGGGG----------------------TGAGCTGTTTTCTTGGCGGGAGTTAATTTACCCCTTTGCACTTCTACCTGGTGACATCCAAAGGAAAGGCCCTAGCCTGAC----TGTGTTTCTAGTGTCTTCCTGTGTGTTGAACTCACTCTAC-------CCTAACTTTCTCCAATCATTTCCTGTCTCCAGGCTCCCTTGCAATCCCTGTGCCACAACCAATGCTTGTGATAAGCCCATTGGGCCCTGTGTCCCTAACCCTTGTGTCACACGACCTCGATGTGGACCTTGCAACACTTTTGTGCGTTAGAGACGCCATTGCCAGAAGG-GGACAAGGATACC--AGTTACATCGTAATGCCACCCCTTCCCAAGTCCTCAAAGAGTCACCGCAC--TGGACAAAGACGGA-----------CCAG-------TTCTTGGCTTCAGTTCAAGC-CT-AGAGTGTATTTTCTCATTTGATCCTTGGGCAC---AGGAG--ATGCAAA--------GTCTGTCTT------------GGGGAGCCTA--------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21417642 617 + 61074082 CGGCTGGAGTGTGAGATCAACACATACCGGGGTCTGCTGGAGAGTGAGGACTGCAAGTGAGTGGGAAGCTAGTACTG-TTCCCCTTGGGGGTGCATGAGGTTGCTGTGGGAATGAAAAGTCATCTCAATGGAAACAAATCAATAATTTCGAGCTTTTGGTCGGAGGTAGTCTGGGGAAGTGTTATATTCTTACACAAAGTACACTTAATATTTTCCTATCTGTTCAGTTCATTTTCC-------TCTAACTTGCACCAATGGTCTTCTGTCTGCAGGCTTCCCTGCAACCCATGTGCCACAACCAATGCATGTGACAAGCCCATAGGGCCTTGTGTCTCCAATCCTTGTGCCCAACGTGCTTGGTGTGGACCTTGCAACACCTTTGTGCGGTAGTGGCCCTGGTGCCAGGAGGAGGAGAAGGGTTCCAAAGTCACATCTCAACTCTACTTAATACAAGCATCTCCTAAGGTGACCACACTTTGGACAAAGGAAGAA---T-TTCTACCAGTACCAGCTTCTAAGTGTCAACTCT-GC-CTTTCACTGAATTTCCTGGCTGGATCCTTTAGAATGCAAAG-T--CTACTTATCAGCTTCTTCTGTCTTCTGAG-CACATAGAGAAATCTACAGCAG--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 396131 579 - 852752 CGGCTGGAGGGCGAGATCAACACGTACCGGGGCCTGCTGGAGAGCGAGGACTGCAAGTGAGGATGAATTTCTTAATT-TCTTCCTTTGGT-TGCATGAGGGTGCTGTGGGGTTGAGTAA---TCTTGATTGAACTATATACAAAATGTCAAGTTTTTGGTTCA----AGCCCAAAGAAGGACC-----------CAGAGTGTTTTTACTGTCTTTCTACCTCTTCAGCTCATTATAT-------TCTAACTTGCCCCAATGATTTTCTATCTCCAGGCTCCCCTGCAATCCCTGTGCCACGTCCAATGCATGCGACAAGCCCCTTGGACACTGCCCACCCAGTATCTGTGCCCCACGTGCCCGATGCGGACCTTGTAACACATTTGTGTGCTAGGGGCCCTGCTGCCCACAGGAAGA-AAGGGCCTC--AGCCACATCTCAACTCTGCTCCACGCATACATCTCCAACAGTGACCA-GCTGCGGACTAAGGCAGGAACCTCTTCCACTAGCACAAGCTTCTAGCGCTCGGGTCTAGCGCTAAGCCTGAATTCCCAGGCTCAATCCTTTAGCTC-------A-----------------GCCTGTCTTCTGAGCCACATAGA-AAACCTACAACAG--- i dasNov3.JH570468 C 0 C 0 a score=1187204.000000 s hg38.chr17_GL383564v2_alt 94368 105 + 133151 CAAGATCAAGCAATATCTATCACCATAAAGACACATTTGCATA--ACATGTTATACTTGAATAAA-ACTTAAAT-AATACAATTTAGAGAAAATTCCATT-AAATGTGAT s panTro5.chr17 16283531 105 + 83181570 CAAGATCAAGCAATATCTATCATCATAAAGACACATTTGCATA--ACATGTTATACTTGGATAAA-ACTTAAAT-AATGCAATTTAGAGAAAATTCCATT-AAGTGTGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188397 105 + 83442489 CAAGATCAAGCAATATCTATCATCATAAAGACACATTTGCATA--ACATGTTATACTTGGATAAA-ACTTAAAT-AATGCAATTTAGAGAAAATTCCATT-AAGTGTGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023428 105 + 4267968 CATGATCAAGTAATATCTATCATCATAAAGACACATTTGCATA--ACATGTTATACTTGAATAAA-AGTTAAAT-AATGCAATTTAGAGAAAATTCCATT-AAGAGTGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2005741 106 - 2193130 CAAGATCAAGTAATATCTATCATCCTAAAGACACATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCAATTTAGAGAAAATTCCATT-AAGTGTGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077279 106 - 77216781 CAAGATCAAGTAATATCTATCATCATAAAGACGCATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCAATTTAGGGAAAATTCAATT-AATTGTGAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989541 106 - 80997621 CAAGATCAAGTAATATCTATCATCATAAAGACGCATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCAATTTAGGGAAAATTCAATT-AATTGTGAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047247 106 + 10377808 CAAGATCAAGTAATATCTATCATCATAAAGACGCATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCAATTTAGGGAAAATTCAATT-AATTGTGAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932197 106 - 8458610 CAAGATCAAGTAATATCTATCATCATAAAGACACATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCAATTTAGGGAAAATTCAATT-AATTGTGAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64887714 106 + 75148670 CAAGATCAAGTAATATCTATCATCATAAAGACGCATTTACATA--ACATGTTATACTTGAACAAA-ACTTACCTAAATGCGATTTAGAGAAAATTCAATT-AATTGTGAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117235 106 + 4244037 CAAGATCAAGTAATATCTATCATCATAAAAATGCATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCAATTTAGGGAAAATTCAATT-AATTGTGAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139621 106 + 4569836 CAAGATCAAGTAATATCTATCATCATAAAGACGTATTTGCATA--ACATGTTATACTTGAACAAA-ACTTATCTAAATGCGATTTAGAGAAAATTCAATT-AATTGTGAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111622 98 - 159171411 ---GATGAAGTGATAACTATTATCATAAAGACACATTTGCATG--ACATGTTATACTTTAACATA-ATGTATCTAAATGTGATTTA-----GATTCCATT-AAGTGTGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822223 103 + 3513951 ---GATGAAGTAATATCTATGATCATAAAGACACATTTGCATG--ACATGTTATACTTTAACAAA-ATGTATCTAAATGTGATTTAGAGATGATTCCATT-AAGTGTACT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1870767 103 + 1920343 ---GATGAAGTAATATCTATTATCATAAAGACACATTTGCATG--ATGTGTTATACTTTAACAAA-ATGTATCTAAATGTGATTTAGAGATGATTCCATT-AAGTGTGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987605 103 - 7032639 ---GATGAAGTAATATCTATTATCATAAAGACACATTTGCATG--ACATGTTATACTTTAACAAA-ATGTATCTAAATGTGATTTAGAGATGATTCCATT-AAGTGTGCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22803367 92 + 28711273 ---GATCGAGTAACATCTATTATCATAAAGACACATTGGTGTA--ACATGTTATGCTTTAACAAA-A-----------GTGATTCAAAAATAATTACATG-AAGTGTGGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22071131 93 - 122082543 ----------CAATACTCA----CACAAAGCCATATTTACATATGCAATGCTGTGCTTTAATAAA-ACTTCTCTAAATGTGACT-GTAAATAACTCCGTT-GAGTGTGGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21418259 105 + 61074082 ---GATTGGGCAATATCTATTATCACAATTACACACTTGCATA--ACATGTTCTGCTTGAACAAATACTTATTTAAATGTGATTTCAAAATAATCACATGAAAGTGTAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 396710 104 - 852752 ---GATCAAATAATATCTATCATCACAATGCCACATTTACATA--ACAAGTTATGCTTTCACAGATACTTATCTAAATGTGAATTAAAAGTAATTACATT-AAATGGGAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2992190 31 + 8555354 I e micMur3.chr16 35904491 31 - 65901067 I a score=1783391.000000 s hg38.chr17_GL383564v2_alt 94473 116 + 133151 AGAGCTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-GCAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGATGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTGTTATTC------ s panTro5.chr17 16283636 116 + 83181570 AGAGCTGATGGGCATGC-TGTGAAACA-GAACATAATTGG---A-GCAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGATGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTGTTATTC------ i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188502 116 + 83442489 AGAGCTGATGGGCATGC-TGTGAAACA-GAACATAATTGG---A-GCAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGATGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTGTTATTC------ i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023533 116 + 4267968 AGAGCTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-GCAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGATGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTGTTATTC------ i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2005847 116 - 2193130 AGAGCTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-GTAAGTCTTCCTTGTCACTC--TTGGTCTTTGGAGATGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTATTC------ i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077385 116 - 77216781 AAAACTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-ATAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGACGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989647 116 - 80997621 AAAACTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-ATAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGACGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047353 116 + 10377808 AAAACTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-ATAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGACGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932303 116 - 8458610 AAAACTGATCGGCATGC-TATGAAACA-GAACATAATTGG---A-ATAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGACGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64887820 116 + 75148670 AAAACTGATGGGCATGC-TACGAAACA-GAACATAATTGG---A-GTAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGACGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117341 116 + 4244037 AAAACTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-ATAAGTCTTCCTTGTCACTC--TTGGTCTTTGGAGACGCAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139727 116 + 4569836 AAAACTGATGGGCATGC-TATGAAACA-GAACATAATTGG---A-GTAAATCTTCCTTGTCACTC--TTGGTCTTTGGAGACACAATAGAAATCCTTTGTTAACCTCCTAATAAACTCTTTTTC------ i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111720 116 - 159171411 AGAGCCTGTGTGCATGC-TATGAAACA-GAACATAATTGG---A-GTAAATCTTCCTTGTCACTCTTTTGGTCTCTGGAGATGCAATAAAAATCCTTTGTTAACCTCCTAGTAAAC--TTATTC------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822326 116 + 3513951 AGAGCCGGCATGCATGC-TATGAAACA-GGACATAATTGG---A-GTAAATCTTCTTCGTCACTCTTTTGGTCTCTGGAGATGCAATAAAAATCCTTTGTTAACCTCCTAGTAAAC--CTATTC------ i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1870870 115 + 1920343 AATGCTGGTGCGCATGC-TATGAAATA-GAACGTAACTGG---A-GGAAATCTTTTTCGTCACTA-TTTGGTCTCTGGAGATGCAATAAAAATCCTTTGTTTACCTCCTAGTAAAC--TTATTC------ i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987708 116 - 7032639 AGAGCTGGTGCGCATGC-TATGAAACA-GAACATAATTGG---A-ATAAATCTTCTTCGTCACTCTTTTGGTCTCTGAAGATGCAATAAAAATCCTTTGTTAACCTCCTAGTAAAC--TTATTC------ i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35904522 118 - 65901067 AGAGCTGATGGGCATGC-TACAGAACA-GGACATAATTGG---A-ATAAATCTTCCTTGTCACTCTTTTGGTCTTTGGAGATGCAATAAAAACCCTTTGTTTACCTCCTAATAAACTCTTATTC------ i micMur3.chr16 I 31 I 19 s proCoq1.NW_012135969v1 2992221 118 + 8555354 AGAGCTGATGGGCATGC-TACAGAACA-GGACATAATTGG---C-ATAAATATTCCTTGTCACTCTTTTGGTCTTTGGAGATGTAATAACAACCCTTTGTTTACCTCCTAATAAACTCTTATTC------ i proCoq1.NW_012135969v1 I 31 I 6 s otoGar3.GL873537 22803459 109 + 28711273 GGAGCTGTGGGGGGGGC-TATGAAATG-GGACATAATTGG---A-ATGAATCTCTCTTGTCAATCTTTCGGTCTTTGGAGATGCAGTA---------TGTTAACTTCCTAATAAACTCTTATGC------ i otoGar3.GL873537 C 0 I 6 s mm10.chr11 22071224 114 - 122082543 GGATCTGGTTGGCAAGCATGTGAAACA---ACATCAGTGA---ACTTAACTTTTCTTTGTTAAACTTTTTGTCTTTTAA-ATGCAACACACATCCTTTGT---CTTCCCAATAAATTCTTATTC------ i mm10.chr11 C 0 I 6 s canFam3.chr9 21418364 121 + 61074082 GGAGCCAAAAGGCAGGC-TATAAAACT-GAACATAATTGGGAAA-AAAAATCTTCCTTGTCACTCTTTTGGTCTTTAGAGATACAGTAAGGATCCCTTGTTAACTTCCTAATAAACTCTTATTC------ i canFam3.chr9 C 0 I 4 s dasNov3.JH570468 396814 124 - 852752 CGAGTTAATGCACATGC-AATGAAATGGGAACCTAATTAG---A-ATAAATCTCCCTTGTTGCTCTTTTGGTCTTTGGAGATGCA-TGGAAATCCTTTATTAACCTCTTAATAAACTCTTATTCTGGCAC i dasNov3.JH570468 C 0 C 0 a score=209978.000000 s hg38.chr17_GL383564v2_alt 94589 16 + 133151 AAAAGTTATAATTGTC s panTro5.chr17 16283752 16 + 83181570 AAAAGTTATAATTGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188618 16 + 83442489 AAAAGTTATAATTGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023649 16 + 4267968 AAAAGTTATAATTGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2005963 16 - 2193130 AAAAGTTATAATTGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077501 16 - 77216781 AAAAGTTATAATTGTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989763 16 - 80997621 AAAAGTTATAATTGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047469 16 + 10377808 AAAAGTTATAATTGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932419 16 - 8458610 AAAAGTTATAATTGTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64887936 16 + 75148670 AAAAGTTATAATTGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117457 16 + 4244037 AAAAGTTATAATTGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139843 16 + 4569836 AAAAGTTATAATTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111836 16 - 159171411 AAAAGCTATAATTGTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822442 16 + 3513951 AAAAGCTATAATTGTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1870985 16 + 1920343 AAAAGCTATAATTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987824 16 - 7032639 AAAAGCTATAATTGTC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2992345 12 + 8555354 AAAAGCTGTAAT---- i proCoq1.NW_012135969v1 I 6 C 0 s otoGar3.GL873537 22803574 12 + 28711273 AAAAATCATAAT---- i otoGar3.GL873537 I 6 C 0 s mm10.chr11 22071344 16 - 122082543 GAAAATCTGAATTGTC i mm10.chr11 I 6 C 0 s canFam3.chr9 21418489 16 + 61074082 ACAAATATCATTTGTC i canFam3.chr9 I 4 I 1 s dasNov3.JH570468 396938 16 - 852752 AGAAATGATAATTGTC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35904640 19 - 65901067 I a score=635274.000000 s hg38.chr17_GL383564v2_alt 94605 42 + 133151 TGTTTCACTCATTAATTCCAAAATTGGCTGTCTTGTATAAAT s panTro5.chr17 16283768 42 + 83181570 TGTTTCACTCATTAATTCCAAAATTGGCTGTCTTGTATAAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188634 42 + 83442489 TGTTTCACTCATTAATTCCAAAATTGGCTGTCTTGTATAAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023665 42 + 4267968 TGTTTCACTCATTAATTCCAAAATTGGCTGTCTTGTATAAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2005979 42 - 2193130 TGTTTCACTCATTAATTCCAAAATTGGCTGTCTTGTATAAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077517 42 - 77216781 TGTTTCACTCATTAATTCCAAAATTGGTTGTCTTGTATAAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989779 42 - 80997621 TGTTTCACTCATTAATTCCAAAATTGGTTGTCTTGTATAAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047485 42 + 10377808 TGTTTCACTCATTAATTCCAAAATTGGTTGTCTTGTATAAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932435 42 - 8458610 TGTTTCACTCATTAATTCCAAAATTTGTTGTCTTATATAAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64887952 42 + 75148670 TGTTTCACTCATTAATTCCAAAATTGGTTGTCTTGTATAAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117473 42 + 4244037 TGTTTCACTCATTAATTCCAAAATTGGTTGTCTTGTATACAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139859 42 + 4569836 TGTTTCACTCATTAATTCCAAAATTGGTTGTCTTGTATAAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111852 42 - 159171411 TATTTCACTCATTAATTCCGAAATTGGTTGTCTTGCATACAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822458 42 + 3513951 TATTTCACTCATTAATTCTAAAATTGGTTGTCTTGCATACAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871001 41 + 1920343 TGTTTCACTCATTGATTCCAAAATTGG-TGTCTTGCATATGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987840 42 - 7032639 TATTTCACTCATTAATTTCAAAATTGGTTGTCTTGCATACAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35904659 42 - 65901067 TGTTTCACTCATTAATTCCAAAATTAGATGTCTTGTATGAAT i micMur3.chr16 I 19 I 102 s proCoq1.NW_012135969v1 2992357 42 + 8555354 CGTTTCACTCATTAATTCCAAAAATGGGTGTCTTGTGTAAAT i proCoq1.NW_012135969v1 C 0 I 102 s otoGar3.GL873537 22803586 42 + 28711273 TGTTTCACTCATTAATTCCCAAACTGTGTGTACTATAAAAAT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22071360 10 - 122082543 TGTTTCACTC-------------------------------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21418506 42 + 61074082 TTCTTTGTTCATTCATCCCCAAACTGGATGTCTTGTATCAAT i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 396954 42 - 852752 CTTTTTATTCATCAACTCAAAAATTGGTTGTCTTGTACAAGC i dasNov3.JH570468 C 0 C 0 a score=1044710.000000 s hg38.chr17_GL383564v2_alt 94647 87 + 133151 TAAAAAAATAACCAGAGTTTTTCCATCAGATGAAGAGGTTATTCA-CCCCA-TATATGGCCTATGATTTCCTTCAATGGA-AAAGCCTCC- s panTro5.chr17 16283810 87 + 83181570 TAAAAAAATAACCAGGGTTTTTCCATCAGATGAAGAGGTTATTCA-CCCCA-TATATGGTCTATGATTTCCTTCAATGGA-AAAGCCTCC- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188676 87 + 83442489 TAAAAAAATAACCAGGGTTTTTCCATCAGATGAAGAGGTTATTCA-CCCCA-TATATGGTCTATGATTTCCTTCAATGGA-AAAGCCTCC- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023707 87 + 4267968 TAAAAAAATAACCAGGGTTTTTCCATCAGATGAAGAGGTTATTCA-CCCCA-TATATGGTCTATGATTTCCTTCAATGGA-AAAGCCTCC- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006021 85 - 2193130 TAAAAAA--AAACAGTGTTTTTCCATCAGATGAAGAGGTTATTCA-CTCCA-TATATGGTCTATGATTTCCTTCAATGGA-AAAGCCTCC- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077559 86 - 77216781 TTAAAAAATAACCAGTGTTTTTCCATCAGATGAAGGGGTTATTCG-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989821 86 - 80997621 TTAAAAAATAACCAGTGTTTTTCCATCAGATGAAGGGGTTATTCG-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047527 86 + 10377808 TTAAAAAATAACCAGTGTTTTTCCATCAGATGAAGGGGTTATTCG-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932477 86 - 8458610 TTAAAAAATAACCAGTGTTTTTCCATCAGATGAAGGGGTTATTCG-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64887994 86 + 75148670 TTTAAAAATAACCAGTGTTTTTCCATCAGATGAAGGGGTTATTCG-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117515 86 + 4244037 TTAAAAAATAACCAGTGTTTTTCCATCAGATGAAGGGGTTATTCG-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139901 86 + 4569836 TTAAAAAATAACCAGTGTTTTTCCACCAGATGAAGGGGTTATTCA-CCCCA-TATATGGTCTGTGATTTCCTTCAATGG--AAAGTCTCC- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111894 87 - 159171411 TAAAAAAGTAACCAGTGTTTTTCCATCAGATAAAGGGGTTATTCA-CCCCA-TACATGGTCTGTGACTTCCTTAAATGGA-AAAGTCTCC- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822500 82 + 3513951 TAAAAAAA-----AGTGTTTTTCCATCAGATAAAGGGCTTATTCA-CCCCA-TATATGGTCTGTGACTACCTTAAATGGA-AAAGTCTCC- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871042 87 + 1920343 TAAAAAAATAACCAGTGCTTTTCCATCAGATAAAGGGGTTATTCA-CCCCA-TATATGGCCTGTGACTTCCTTAAATGGA-AAGGTCTCC- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987882 87 - 7032639 TAAAAAAATAACCAGTGTTTTTCCATCAGATAAAGGGGTTATTCA-CCCCA-TATATGGTCTGTGACTTCCTTAAATGGA-AAAGTCTCC- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22803628 81 + 28711273 ---AAAAGTCATCAGTGTTTTTCCATCAGATGGGGCAATTATTC----CAA-TATATGGTCTGTGGCTTCCTTCAAAGGA-AAAGGCTAC- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22071370 84 - 122082543 ---AACATTAACCAGTGTTTTCCCACTAGATGGAAGGTCCAGTCACCCCCA-TATATGGCTTGTGATTTCCTTCAAGGA--AAAGCCTCC- i mm10.chr11 C 0 I 1561 s canFam3.chr9 21418548 65 + 61074082 --AAAATGTAAGTGGTGTTCTTTTACCAGATGAAGGGA----TCA----------------TGTGACTTCCTTCAAAAG---GAGTCTCC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 396996 87 - 852752 ---GAAAATGAGTAGTGTTCTTTTATCAGGTGAAGGGGTCATTCA-CCCTATTATATGGTCTGTGATTTCTTTCAAAGGATAGAGACTCTC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2992399 102 + 8555354 I e micMur3.chr16 35904701 102 - 65901067 I a score=204940.000000 s hg38.chr17_GL383564v2_alt 94734 26 + 133151 ATGAAAGA-----------------CTATTAACCCGGATTTAG s panTro5.chr17 16283897 26 + 83181570 ATGAAAGA-----------------CTATTAACCTGGATTTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188763 26 + 83442489 ATGAAAGA-----------------CTATTAACCTGGATTTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023794 26 + 4267968 ATGAAAGA-----------------CTATTAACCTGGATTTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006106 26 - 2193130 ATGAAAGA-----------------CTATTAACCTGGATTTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077645 26 - 77216781 CTGAAAGA-----------------CCATTAACCTGCATTTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989907 26 - 80997621 CTGAAAGA-----------------CCATTAACCTGCATTTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047613 26 + 10377808 CTGAAAGA-----------------CCATTAACCTGCATTTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932563 26 - 8458610 CTGAAAGA-----------------CCACTAACCTGCATTTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888080 26 + 75148670 CTGAAAGA-----------------CCATTAACCTGCATTTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117601 26 + 4244037 CTGAAAGA-----------------CCATTAACCTGCATTTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2139987 26 + 4569836 CTGAAAGA-----------------CCATTAACCTGGATTTAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46111981 26 - 159171411 ATCAAACA-----------------CTGTTAACCTAGATTTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822582 26 + 3513951 ATGAAACA-----------------CTGTTAACCTAGATTTAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871129 25 + 1920343 A-GAAACA-----------------CTGTTAACCTAGATTTAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987969 26 - 7032639 ATGAAACA-----------------CTATTAACCTAGATTTAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22803709 30 + 28711273 ACCAACCA-------------CCCCCTATTGGTCTGGATTTCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21418613 34 + 61074082 GTCAGACATCA---------CCCACCTGTTGATGTGGATTTCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 397083 33 - 852752 ----------AGGCATGGGCATCACCTGTTGATCTGGATTTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992399 102 + 8555354 I e micMur3.chr16 35904701 102 - 65901067 I a score=573041.000000 s hg38.chr17_GL383564v2_alt 94760 37 + 133151 TGTTTGGGAAGAAGGTGGT-GGGAAACAGAATGGCAAA s panTro5.chr17 16283923 37 + 83181570 TGTTTGGGAAGAAGGTGGT-GGGAAACAGAATGGCAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188789 37 + 83442489 TGTTTGGGAAGAAGGTGGT-GGGAAACAGAATGGCAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023820 37 + 4267968 TGTTTGGGAAGAAGGTGGT-GGGAAACAGAATGGCAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006132 37 - 2193130 TGTTTGGGAAGAAGGTGGT-GGGAAAAAGAATGGCAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077671 37 - 77216781 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAACAGCAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989933 37 - 80997621 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAACGGCAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047639 37 + 10377808 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAACGGCAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932589 37 - 8458610 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAACGGCAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888106 37 + 75148670 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAATGGCAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117627 37 + 4244037 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAACGGCAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140013 37 + 4569836 TGTTTGGGAAGAAGGTGGT-GGGAAAGAGAACGGCAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112007 38 - 159171411 TATTTGGGAAGAAGGTGGTGGGGAAGGAGAATGGTAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822608 38 + 3513951 TATTTGGGAAGAAGGTGGTGGGGAAGGAGAATGGCAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871154 38 + 1920343 TATTTGAGAAGGAGGTGGTGGGGAAGGAGAATGGTAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6987995 38 - 7032639 TACTTGGGAAGAAGGTGGTGGGGAAGGAGAATGGCAAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35904803 37 - 65901067 TGTTTGGGAAGAATGAGGT-GGGAAAGAGAATGGCAAA i micMur3.chr16 I 102 I 464 s proCoq1.NW_012135969v1 2992501 37 + 8555354 TGTTTGGGAAGAACGAGGT-GGGAAAGAGAATGGCAAA i proCoq1.NW_012135969v1 I 102 I 331 s otoGar3.GL873537 22803739 37 + 28711273 TGTTTGGGAAGAAGGTGGT-GAGGAAGAGAATGGCAAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21418647 37 + 61074082 TGTGCGTGGGGAAGTTGGT-AGTGAAACAAATGGCAAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 397116 37 - 852752 AGTTTGGGAGGGAGGTGGA-GGGAAAGGGAATGACAAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I a score=268345.000000 s hg38.chr17_GL383564v2_alt 94797 23 + 133151 TTCATATGAAGGTGTCTTTAGAG s panTro5.chr17 16283960 23 + 83181570 TTCATATGAAGGTGTCTTTAGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188826 23 + 83442489 TTCATATGAAGGTGTCTTTAGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023857 23 + 4267968 TTCATATGAAGGTGTCTTTAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006169 23 - 2193130 TTCATATGAAGGTGTCTTTAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077708 23 - 77216781 TTCATATGAAGGTGTCTTTACAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989970 23 - 80997621 TTCATATGAAGGTGTCTTTACAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047676 23 + 10377808 TTCATATGAAGGTGTCTTTACAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932626 23 - 8458610 TTCATATGAAGGTGTCTTTACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888143 23 + 75148670 TTCATATGAAGGTGTCTTTACAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117664 23 + 4244037 TTCATATGAAGGTGTCTTTACAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140050 23 + 4569836 TTCATATGAAGGTGTCTTTAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112045 23 - 159171411 TTCATATGAAAGTGTCCTTAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822646 23 + 3513951 TTCATATGAAAGTGTCTTTAGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871192 23 + 1920343 TTCATATGAAAGTGTCTTTAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6988033 23 - 7032639 TTCACATGAAAGTGTCTTTAGAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22803776 21 + 28711273 GCCACATG--GGAGCCTCTAGAG i otoGar3.GL873537 C 0 I 941 s canFam3.chr9 21418684 23 + 61074082 TCCACATGACAGTATCTACAAAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 397153 21 - 852752 TTCACACCA--GTGTCTTCAAGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I a score=13923.000000 s hg38.chr17_GL383564v2_alt 94820 1 + 133151 A s panTro5.chr17 16283983 1 + 83181570 A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188849 1 + 83442489 A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023880 1 + 4267968 A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006192 1 - 2193130 A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077731 1 - 77216781 A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989993 1 - 80997621 A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047699 1 + 10377808 A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932649 1 - 8458610 A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888166 1 + 75148670 A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117687 1 + 4244037 A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140073 1 + 4569836 A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112068 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822669 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871215 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6988056 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21418707 1 + 61074082 A i canFam3.chr9 C 0 I 2397 s dasNov3.JH570468 397174 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=352728.000000 s hg38.chr17_GL383564v2_alt 94821 32 + 133151 CACAGGAACTATTTATTCTGAAACATTAAGTG s panTro5.chr17 16283984 32 + 83181570 CACAGGAACTATTTATTCTGAAACATTAAGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188850 32 + 83442489 CACAGGAACTATTTATTCTGAAACATTAAGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023881 32 + 4267968 CACAGGAACTATTTATTCTGAAACATTAAGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006193 32 - 2193130 TACAGGAACTACTTATTTTGAAACATTAAGTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077732 32 - 77216781 TACAGGAACTATTTATTTTGAAACATTAAGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27989994 32 - 80997621 TACAGGAACTATTTATTTTGAAACATTAAGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047700 32 + 10377808 TACAGGAACTATTTATTTTGAAACATCAAGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932650 32 - 8458610 TACAGGAACTATTTATTTTGAAACATTAAGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888167 32 + 75148670 TACAGGAACTATTTATTTTGAAACATTAAGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117688 32 + 4244037 TACAGGAACTATTTATTTTGAAACATTAAGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140074 32 + 4569836 TACAGGAACTATTTATTTTGAAACATTAAGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112069 32 - 159171411 TACAGGATTTATTTATTTTGAGACGTTAAGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822670 32 + 3513951 TACAGAAACTATTTATTTTGAGACATGAAGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871216 32 + 1920343 TACAGGAACTATTTATTTTGAGACATTAAGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6988057 32 - 7032639 TACAGGAACTATTTATTTTGAGACATTAAGTG i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 397175 32 - 852752 TAAAAGAATTATTCATTTTGAAATATGAAGTG i dasNov3.JH570468 C 0 I 3194 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e canFam3.chr9 21418708 2397 + 61074082 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=257781.000000 s hg38.chr17_GL383564v2_alt 94853 33 + 133151 GAGGGATCCGAAAACCTTTTGAGT-AAAAAAA--AA- s panTro5.chr17 16284016 33 + 83181570 GAGGGATCTGAAAACATTTTGAGT-AAAAAAA--AA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188882 32 + 83442489 GAGGGATCTGAAAACATTTTGAGT-AAAAAAA--A-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023913 34 + 4267968 GAGGGATCCGAAAACATTTTGAGT-AAAAAAA--AAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006225 34 - 2193130 GAGGGATCCGAAAACATTTGGAGC-AAAAAAA--AAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077764 36 - 77216781 GAGGGATCTGAAAACATTTGGAGT-AAAAAAACCAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27990026 36 - 80997621 GAGGGATCTGAAAACATTTGGAGT-AAAAAAACCAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047732 36 + 10377808 GAGGGATCTGAAAACATTTGGAGT-AAAAAAACCAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932682 36 - 8458610 GAGGGATCTGAAAACATTTGGAGT-AAAAAAACCAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888199 37 + 75148670 GAGGGATCTGAAAACATTTGGAGTAAAAAAAACCAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117720 36 + 4244037 GAGGGATCTGAAAACATTTGGAGT-AAAAAAACCAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140106 36 + 4569836 GAGGGATCTGAAAATATTTGGATT-AAAAAAAACAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112101 32 - 159171411 CAGAGATCTGAAAACATTTGGAAT-AAAAAGA----A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822702 32 + 3513951 CAGGGATCTGAAAACATTTGGAGT-AAAAAGA----A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871248 32 + 1920343 CAGGGATCTGAAAACATTTGGAAT-AAAAAGA----A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6988089 32 - 7032639 CAGGGATCTGAAAACATTTGGAAT-AAAAAGA----A i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e dasNov3.JH570468 397207 3194 - 852752 I e canFam3.chr9 21418708 2397 + 61074082 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=124634.000000 s hg38.chr17_GL383564v2_alt 94886 13 + 133151 ACCTGTACTGAGG s panTro5.chr17 16284049 12 + 83181570 -CCTGTACTGAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188914 12 + 83442489 -CCTGTACTGAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023947 13 + 4267968 ACCTGTACTGAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006259 13 - 2193130 AACTGTACTAAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077800 13 - 77216781 AACTGTACTAAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27990062 13 - 80997621 AACTGTACTAAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047768 13 + 10377808 AACTGTACTAAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932718 13 - 8458610 AACTGTACTAAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888236 13 + 75148670 AACTGTACTAAGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117756 13 + 4244037 AACTGTACTAAGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140142 13 + 4569836 AACTGTACTAAGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112133 13 - 159171411 AACTGTACTAGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822734 13 + 3513951 AACTGTACTAAGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871280 13 + 1920343 AACTGTACTAAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6988121 13 - 7032639 AACTGTACTAATG i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 400401 13 - 852752 atctatatctata i dasNov3.JH570468 I 3194 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e canFam3.chr9 21418708 2397 + 61074082 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=316229.000000 s hg38.chr17_GL383564v2_alt 94899 35 + 133151 TAATATAAATCTATCACCTTAACATATGGTATATA s panTro5.chr17 16284061 35 + 83181570 TAATATAAATCTATCACCTTAACATATGGTATATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188926 35 + 83442489 TAATATAAATCTATCACCTTAACATATGGTATATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023960 35 + 4267968 TAATATAAATCTATCACCTTAACATATGGTATATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006272 35 - 2193130 TAATATAAATCTATCACCTTAATATATGGTATATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077813 31 - 77216781 TAATATA----TATCACCTTAACATATGGTATGTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27990075 31 - 80997621 TAATATA----TATCACCTTAACATATGGTATGTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2047781 31 + 10377808 TAATATA----TATCACCTTAACATATGGTATGTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1932731 31 - 8458610 TAATCTA----TATCACCTTAACATATGGTATGTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888249 31 + 75148670 TAACATA----TATCACCTTAACATATGGTATGTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2117769 31 + 4244037 TAATATA----TATCACCTTAACATATGGTATGTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140155 31 + 4569836 TAATATA----TATCACCTTAACATATGGTATGTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112146 35 - 159171411 TAACACAAATCTATCATCTTAACATACGGTATATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1822747 35 + 3513951 TAATATAAATCTATCACCTTAACATACGGTATATA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871293 35 + 1920343 TAATATAAATCTATTACCTTAACATACGGTATATA i cebCap1.NW_016107730v1 C 0 I 196 s aotNan1.NW_018502359v1 6988134 35 - 7032639 TAATATAAATCTATCACCTTAACATAAGGTATATA i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21421105 34 + 61074082 taatatataatta-catattaatacacatTATATG i canFam3.chr9 I 2397 I 4 s dasNov3.JH570468 400414 32 - 852752 taatttatatctatctcc---atctatatcatcta i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=434674.000000 s hg38.chr17_GL383564v2_alt 94934 50 + 133151 ATCT-CATATACACATATACATAACCACATACC-ATATA-----AGCATATGTacac s panTro5.chr17 16284096 50 + 83181570 ATCT-CATATACACATATACATAACCACATACC-ATATA-----AGCATATGTACAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16188961 50 + 83442489 ATCT-CATATACACATATACATAACCACATACC-ATATA-----AGCATATGTacac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4023995 50 + 4267968 ATCT-CATATACACATATACATAACCACATACC-ATATA-----AGCATATGTacac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006307 44 - 2193130 ATCT-CAT------ATATACATAACCACATACC-ATATA-----AGCATATGTACAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077844 50 - 77216781 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATATGTACAC i rheMac8.chr16 C 0 I 26 s macFas5.chr16 27990106 50 - 80997621 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATATGTACAC i macFas5.chr16 C 0 I 26 s macNem1.NW_012014910v1 2047812 50 + 10377808 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATATGTACAC i macNem1.NW_012014910v1 C 0 I 26 s cerAty1.NW_012006043v1 1932762 50 - 8458610 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATATGTACAC i cerAty1.NW_012006043v1 C 0 I 26 s chlSab2.chr16 64888280 50 + 75148670 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATATGTACAC i chlSab2.chr16 C 0 I 24 s manLeu1.NW_012106252v1 2117800 50 + 4244037 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATATGTACAC i manLeu1.NW_012106252v1 C 0 I 26 s colAng1.NW_012122154v1 2140186 50 + 4569836 ATCT-CATATATACATATACATAACCACATATT-ATATA-----AGCATACGTACAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112181 50 - 159171411 GTCT-CATGTACATATATGCATAAGCACATATC-ATATA-----AGCATATGTACAC i calJac3.chr5 C 0 I 38 s saiBol1.JH378271 1822782 50 + 3513951 GTCT-CATATACACAGATGCATAACCACATATC-ATATA-----GGCATATGTACAC i saiBol1.JH378271 C 0 I 36 s aotNan1.NW_018502359v1 6988169 50 - 7032639 GTCT-CATATACACATGTGCATAACCACATATC-ATATA-----GGCATATGTACAC i aotNan1.NW_018502359v1 C 0 I 32 s canFam3.chr9 21421143 43 + 61074082 attt-agtataattaaatatgtaacaatatatt-aatta-----atc-tat------ i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 400446 56 - 852752 -tctatatctacctacctacctactcacctacctatgtacctaGAGCTCATATTTAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I e cebCap1.NW_016107730v1 1871328 196 + 1920343 I a score=3455706.000000 s hg38.chr17_GL383564v2_alt 94984 337 + 133151 cacacacaca--------------tgcacacacacaACCATGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGGATATAGTGGCCAGGAGGAGT-GTGGGATCTGCTAGGCTGGATGGTGGGGAGGTGCCTTTGG-TTCACCTTCCTCTCTTTGTTCCTGCCTCGGCACTCAAGGACTCCTTGTGACTTTCTGTAGTTCTATGATGTGGGCCTGGAACTCTATGCTGGAGTT-------------CTCTGCTCAGTTGCCTGGG------GTCTGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGGCGGAAAAGTCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG s panTro5.chr17 16284146 337 + 83181570 CACACACACA--------------TGTACACACACAACCATGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGGATATAGTGGCCAGGAGGAGT-GTGGGATCTGCTAGGCTGGATGGTGGGGAGGTGCCTTTGG-TTCACCTTCCGCTCTTTGTTCCTGCCTCGGCACTCAAGGACTCCTTGTGACTTTCTGTAGTTCTATGATGTGGGCCTGGAACTCTATGCTGGAGTT-------------CTCTGCTCAGTTGCCTGGG------GTCTGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGACGGAAAAGTCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189011 335 + 83442489 cacacacaca--------------tg--cacacacaACCATGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGGATATAGTGGCCAGGAGGAGT-GTGGGATCTGCTAGGCTGGATGGTGGGGAGGTGCCTTTGG-TTCACCTTCCTCTCTTTGTTCCTGCCTCGGCACTCAAGGACTCCTTGTGACTTTCTGTAGTTCTATGATGTGGGCCTGGAACTCTATGCTGGAGTT-------------CTCTGCTCAGTTGCCTGGG------GTCTGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGACGGAAAAGTCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024045 337 + 4267968 cacacacaca--------------tgcacacacacaACCATGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGGATATAGTGGCCAGAAGGAGT-GTGGGATCTGCTAGGCTGGATGGTGGGGAGGTGCCTTTCG-TTCACCTTCCTCTCTTTGTTCCTGCCTCGGCACTCAAGGACTCCTTGTGACTTTCTGTAGTTCTATGATGTGGGCCTGGAACTCTATGCTGGAGTT-------------CTCTGCTCAGTCGCCTGGG------GTCTGCATCAGATGATGGAGAACAGTGAGTGGGTTATTTGACGGAAAAGTCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006351 351 - 2193130 CACACACACAGGTGTGCACAGGTGTGCACACACACAACCACGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGGATATAGTGGACAGGAGGAGT-GTGGGATCTGCTAGGCAGGATGGTGGGGAGGTGCCTTTGG-TTCACCTTCCTCTCTTTGTTCCTGCCTCGGCACTCAAGGACTCCTTGTGACTTTCTGTAGTTCTATGATTTGGGCCCGGAACTCTATGCTGGAGTT-------------CTCTGCTCAGTTGCCTGGG------GTCTGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGACAGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30077920 350 - 77216781 cacacacaca--------------cgcacacacacaACCACGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGAATACAGTGGCCAGGAGGAGT-GTGGGGTCTGCTAGGCTGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTTTCTTCGTCCCTGCCTTGGCACTCAAGGACTCCTTGCGACTTTCTGTATTTCTATGACGTGGGCCTGGAACTCTACGCTGGAGTTCTCTGCTAAGTTTCTCTGCTCAGTTGCCTGGG------GTCCGCGTCAGATGATGGGGAACTGTGAGTGGGTTATTTGATGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i rheMac8.chr16 I 26 C 0 s macFas5.chr16 27990182 350 - 80997621 cacacacaca--------------cgcacacacacaACCACGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGAATACAGTGGCCAGGAGGAGT-GTGGGGTCTGCTAGGCTGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTTTCTTCGTCCCTGCCTTGGCACTCAAGGACTCCTTGCGACTTTCTGTATTTCTATGACGTGGGCCTGGAACTCTACGCTGGAGTTCTCTGCTAAGTTTCTCTGCTCAGTTGCCTGGG------GTCCGCGTCGGATGATGGGGAACTGTGAGTGGGTTATTTGATGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i macFas5.chr16 I 26 C 0 s macNem1.NW_012014910v1 2047888 350 + 10377808 cacacacacg--------------cgcacacacacaACCACGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGAATACAGTGGCCAGGAGGAGT-GTGGGGTCTGCTAGGCTGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTTTCTTCGTCCCTGCCTTGGCACTCAAGGACTCCTTGCGACTTTCTGTATTTCTATGACGTGGGCCTGGAACTCTAAGCTGGAGTTCTCTGCTAAGTTCCTCTGCTCAGTTGCCTGGG------GTCCGCGTCAGATGATGGGGAACTGTGAGTGGGTTATTTGATGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i macNem1.NW_012014910v1 I 26 C 0 s cerAty1.NW_012006043v1 1932838 350 - 8458610 cacacacaca--------------tgcacacacacaACCATGCTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGAATACAGTGGCCAGGAGGAGT-GTGGGGTCTGCTAGGCTGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTCTCTTCGTCCCTGCCTTAGCACTCAAGGACTCCTTGCGACTTTCTGTATTTCCATGATGTGGGCCTGGAACTCTACGCTGGAGTTCTCTGCTAAGTTTCTCTGCTCAGTTGCCTGGG------GTCCGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGATGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i cerAty1.NW_012006043v1 I 26 C 0 s chlSab2.chr16 64888354 350 + 75148670 CACATACACA--------------TGCACACACACAACCACGCTGTACTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGAGGAATACAGTGGTCAGGAGGAGT-GTGGGATCTGCTAGGCCGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTCTCTTCGTCCCTGCCTTGGCACTCAAGGACTCCTTGCGACTTTCTGTATTTCTATGATGTGGGCCTGGAACTCTACGCTGGAGTTCTCTGCTAAGTTTCTCTGCTCGGTTGCCTGGG------GTCCGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGACGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i chlSab2.chr16 I 24 C 0 s manLeu1.NW_012106252v1 2117876 350 + 4244037 cacacacaca--------------tgcacacacacaACCACGCTGTGCTGAAATGTT-TAGGTAGAAACTAGGAAGGAGCAGCAAAGGGTAGAGGAATACAGTGGCCAGGAGGAGT-GTGGGGTCTGCTAGGCTGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTCTCTTCGTCCCTGCCTTGGCACTCAAGGACTCCTTGCGACTTTCTGTATTTCTATGATGTGGGCCTGGAACTCTACGCTGGAGTTCTCTGCTAAGTTTCTCTGCTCAGTTGCCTGGG------GTCCGCGTCAGATGATGGAGAACTGTGAGTGGGTTATTTGATGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i manLeu1.NW_012106252v1 I 26 C 0 s colAng1.NW_012122154v1 2140236 350 + 4569836 CACACACACA--------------TGCACACACTCAACCACGATGTGCTGAAATGCT-TAGGTAGAAAGTAGAAAGGAGCAGCAAAGGGTAGTGGAATACAGTGGCCAGGAGGAGT-GTGGGGTCTGCTAGGCTGGATGGTAGGGAGATGCCTTTGG-TTCACCTTCCTCTCCTTGTTCCTGCCTTGGCACTCAAGGATTCCTTGCGACTTTCTGTATTTCTATGATGTGGGCCTGGAACTCTATGCTGCAGTTCTCTGCTAAGTGTCTCTGCTCAGTTGCCTGGG------GTCTGCGGCAGATGATGGAGAACCGTGAGTGGGTTATTTGACGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGCTTTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112269 331 - 159171411 cacacacaca--------------cacacacacacacacacacTGTGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAACAGCAAAGGGTAGAGGGGTATAGTGGCCAGGAGGAGT-GTGGGATCTGCTAGGCTGGATGGTGGAAAGGTGCCTCAGG-TTCCCCTTCCTCTCTTTGTCCCTGCCTCGGTGGTCAAGGATTCCCTGTGACTTTCTG--------TGATGTGGACCTG---TTCTCTGCTGGAGTGCACGC--------TCTTTCTCAGTCGCCTGGG------ATCCACGTCAGGTGATGGGGAACTGTGAGTGGGTTATTGGATGGAAAAGCTTCTTTTGTCCTAGTAAGCCTT-GAGATTTGG i calJac3.chr5 I 38 C 0 s saiBol1.JH378271 1822868 329 + 3513951 cacacacaca--------------cacacacacacacacacGCTGTGCTGAAATGTT-TAGGTAGAAAGTTGGAAGGAGCAGCAAAGGGTAGAGGGGTATAGTTGCCAGGAGGAGT-GTCGGATCTGCTAGGCTGGATGGTGGGATGGTGCCTCGGG-TTCACCTTCCTTTCTTTGTCCCTGCCTTGGTGGTCAAGGACGCCTTGTGATCTTCTG--------TGATGTGGACTTG---TTCTCTGCTGGAGTTTACTC--------TCTTTCTCAGTCGCTTGGG------ATCCACGTCAGGTGATGGAGAACTGTGAGTGGGCTATTGGATGGAAAAGC--CTTTTGTCCTAGTGAGCCTT-GAGATTTGG i saiBol1.JH378271 I 36 C 0 s cebCap1.NW_016107730v1 1871524 331 + 1920343 cacacacaca--------------cacacacacacacacacacTGTGCTGAAATATT-TAGGTAGAAAGTTGGAAGGAGCAGCAAAGGGTAGAGGGGTATAGTGGCCAGGAGGAGT-GTGGGATCTGCTAGGCTGGAGGGTGGGAAGCTGCCTCGGG-TTCACCTTCCTCTCTTGGTCCCTGCCTTGGTGGTCAAGGACTCCTTGCGACTTTCTG--------TGATGTGGATCTG---TTCTCCGCTGGAGTACACTC--------TCTTTCTCAGTCACCTGGG------ATCCGCGTCAGGTGATGGGGAACCGTGAGTGGGTTATTGGATGGAAAAGCCTCCTTTGTCCTAGTGAGCTTT-GAGATTTGG i cebCap1.NW_016107730v1 I 196 C 0 s aotNan1.NW_018502359v1 6988251 330 - 7032639 cacacacaca--------------cacacacacacacacacacTATGCTGAAATGTT-TAGGTAGAAAGTAGGAAGGAGCAGCAAAGGGTAGA-GGGTAGAGTGGCCAGGAGGAGT-GTGGGATCTGCTGGGCTGGATGGTGGGAAGGTGCCTCAGG-TTAACCTTCCTCTCTTTGTCCCTGCCTCGGTGGTCAGGGACTCCTTGTGACTTTGTG--------TGATGTGGACCTG---TTCTCTGCTGGAGTGCACTC--------TTTTACTCAGTCGCCTGGG------ATCCGCGTCAGGTGATGGGGAACTGTGAGTGGGTTATTGGATGGAAAAGCCTCTTTTGTCCTAGTGAGCCTT-GAGATTTGG i aotNan1.NW_018502359v1 I 32 C 0 s canFam3.chr9 21421186 313 + 61074082 --tataaatt--------------taGACACACAC----------------AATATG-TAGGTAGAAAGCAGGAGAGCACAGCAGAGGGTGGA-GGATCTAGTGGTCATGAGAAGTGGCAGGGTTGGCTAGGCTGGATGG-GGGCAGGCGCCTTGGA-TTCACCTTCCTCTTTCTATCCCCTCCTCCACACCCA--GAATCCTGGGACTGCTCCTTAGTCCTCTGACATGGG-CTGGAGCTCTATGCTGGACTGTGCCTT-------CCCTGCTCAGTTGACTGAGGTGTCAGTGTGCTTCAGCTGGTGGAGGACTGTGGCTGGTTTATT---------------CTGTATTTTAGTGAGCCCTGGAGCTTTGG i canFam3.chr9 C 0 I 189 s dasNov3.JH570468 400502 328 - 852752 ------------------------TGTGTGCGCATGTACATGACATCCTGAAAGGTTACAAGTGGGAAGTAGGAAAGGCCAG-GAAGAGTGGAGGGATCAAGTAGCACGAGGGGTG-GTGGGATTTGCCAGGGTGTGTGGTGGGAGAGGGCCACGGGATTGGCCTTGCCCCTTTTGTCCCCTGCCCTGTGCTGACAAGTCCTCGGCACTGTTCTGTTACTCAGGGATAGGGGCCTGGAACCCCCTGCTAGGGCGCACATCCT-----TCGTGCTCAGCGGCCTGAGGCAGCAGTGCACCTCTGAGGATGGGGACCTTTGGTGGGTTTATTCTATAG---------------TTTATTGAGCCCTGGGGCTTTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=959550.000000 s hg38.chr17_GL383564v2_alt 95321 84 + 133151 CCCCACCTGTTTTTATTTATATGCAGTTGGGACCATCATTATGTCACATTACTGCCTTCAGTGGCATCCAGATTTGGCAATGTT s panTro5.chr17 16284483 84 + 83181570 CCCCACCTGTTTTTATTTATATGCCATTGGGACCATCATTCTGTCACATTACTGCCTTCAGTGGCATCCAGATTTGGCAATGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189346 84 + 83442489 CCCCACCTGTTTTTATTTATATGCCATTGGGACCATCATTCTGTCACATTACTGCCTTCAGTGGCATCCAGATTTGGCAATGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024382 84 + 4267968 CCCCACCTGTTTTTATTTATATGCCATTGGGACCATCATTCTGTCACATTACTGCCTTCAGTGGCATCCAGATTTGGCAATGTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006702 84 - 2193130 TCCCACCTGTTTTTATTTATCTGCAGTTGGGACCATCGTTCGCTCACATTACTGCCTTCAGTGGCATCCAGATTTGGCAATGTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078270 84 - 77216781 TCCCACCTGTTTTTATTTAAATGCAGTTGGGACCATCGTTTTGTCACATTACTGCCTTCAGTGGCAACCAGATTTACCAATGTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27990532 84 - 80997621 TCCCACCTGTTTTTATTTAAATGCAGTTGGGACCATCGTTTTGTCACATTACTGCCTTCAGTGGCAACCAGATTTACCAATGTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048238 84 + 10377808 TCCCACCTGTTTTTATTTAAATGCAGTTGGGACCATCGTTTTGTCACATTACTGCCTTCAGTGGCAACCAGATTTACCAATGTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933188 84 - 8458610 TCCCACCTGTTTTTATTTAAATGCAGTTGGGACCATCGTTTTGTCACATTACTGCCTCCAGTGGCAACCAGATTTACCAATGTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888704 84 + 75148670 TCCCACCTGTTTTTATTTAAATGCAGTTGGGACCATCGTTTTGTCACATTACTGCCTTCAGTGGCAACCAGATTTACCAATGTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118226 84 + 4244037 TCCCACCTGTTTTTATTTAAATGCAGTTGGGACCATCGCTTTGTCACATTACTGCCTTCAGTGGCAACCAGATTTACCAATGTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140586 84 + 4569836 TCCCACCTGTTCTTATTTGTATGTAGTTGGGACCATCATTTTGTCACATTACTGCCTTCAGTGGCAACCAGATTTACCAATGTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112600 84 - 159171411 TCCCATGTGTTTTTATTTATATGCAGTTGGGACCATTGTTCTGTCACATTACTGCCTTCAGTGATGTCCAGATTTACCAATGTT i calJac3.chr5 C 0 I 122 s saiBol1.JH378271 1823197 84 + 3513951 TCTCATCCGTTTTTATTTACATGCAGTTGGGGCCATTGTTCTGTCACATTACCGCCTTCAGTGGCGTCCAGGTTTACCAATGTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1871855 84 + 1920343 TCCTATCTGTTTTTATTTATATGCAGTTGGGACCATTGTTCTGTCACATTACTGCCTTCAGTGGTGTCCAGATTTACCAATGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6988581 84 - 7032639 TCCCATCTGTCTTTATTTATATGCAGTTGGGACCATTGTTCTGTCACATTACCGCCTTCAGTGGTGTCCAGATTTACCAATGTT i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21421688 84 + 61074082 cCCCATCCATTTTTATTTGTATGTAGTTGGGATCATCTATCTATCATATTATTGCATTCAGTGGTGTCTACACTTACCAGTGTT i canFam3.chr9 I 189 I 1 s dasNov3.JH570468 400830 84 - 852752 TTCTATGTGTTTTTATTTGTAGGCAGTTGGGTTCATCTTGCAATAATCTTACTGCATTCAGTGGTATCCAGATTTACCAGTGTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=1299818.000000 s hg38.chr17_GL383564v2_alt 95405 120 + 133151 --TAAAAA----AACAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCATTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAGA s panTro5.chr17 16284567 120 + 83181570 --TAAAAA----AACAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCATTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189430 120 + 83442489 --TAAAAA----AACAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCATTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024466 119 + 4267968 --TGAAAA----AACAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCA-TTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006786 120 - 2193130 --TAAAGA----AAGAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCCATGATTGAAATGAAGAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078354 119 - 77216781 --TAAAAA----AACAAAAACAGCAGTCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27990616 119 - 80997621 --TAAAAA----AACAAAAACAGCAGTCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048322 119 + 10377808 --TAAAAA----AACAAAAACAGCAGTCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933272 119 - 8458610 --TAAAAA----AACAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888788 119 + 75148670 --TAAAAA----AACAAAAACAGTAATCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118310 119 + 4244037 --TAAAAA----AACAAAAACAGCAGTCAAGTAAGGAAACCCAAGGCCCAGCCCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140670 119 + 4569836 --TAAAAA----AACAAAAACAGCAATCAAGTAAGGAAACCCAAGGCCCAGCTCACAAATGAGATTGAGTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112806 123 - 159171411 --taaaaaaaCCCACGCAAATGGTAATCAAGTAAGGAAACGCAAGGCCCGGCCTGCAGATGAGACTGATTCTCGTTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i calJac3.chr5 I 122 I 1 s saiBol1.JH378271 1823281 104 + 3513951 --TAAAAA----CACACAAACGGTAATCAAGTA---------------TTACCCTCAGATGAGATTGATTCGCATTTTTCACTTCTCTACTCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i saiBol1.JH378271 C 0 I 192 s cebCap1.NW_016107730v1 1871939 120 + 1920343 --TAAAAAA---AACACAAACGGTAATCAAGGAAGGAAGCCCAAGGCCCGGCCTGCAGATGACATTGATTCTCGTTTTTCACTTCTCTAATCCTACTTTTCTAAATCAATGATTGAAATGAAGAG- i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 6988665 114 - 7032639 --TAAAAA----AACACAAACGGTAATCAAGTAAGGAAACCCAAGGCCCAGCCCGCAGATGAGACTGATTCTCGTTTTTCACTTC-----TCCTACTTTCCTAAATCAATAATTGAAATGAAGAG- i aotNan1.NW_018502359v1 C 0 I 1 s canFam3.chr9 21421773 118 + 61074082 --AAAAAG----AACACAAACAACAATCAAGTGAAGGAACGCAAGGCCCAGCTCACAAAAGAGACTGACTCTTGTTTTCC-TTTCCTGATTCCTACTTTTCTAAATCAGTTTCTGGAATGGAGAG- i canFam3.chr9 I 1 I 1 s dasNov3.JH570468 400914 118 - 852752 CGAAATAA----AACGCAGACTTCAGTCTGGTAAGGGAGTCTAAGACCCAGGCCACAAA-GAGATTGATTCTTGTTTCCC-TTTCCCTATATTCCCTTTTCTAAATCAATTATTGGAACAGAGA-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=3070942.000000 s hg38.chr17_GL383564v2_alt 95525 288 + 133151 TATTGAGAATGGGAACTCTTAATAGAGATTAGAATATCATCAACCTATGAGAACAGGTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATATTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCAAAACCTTCCATTCAGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACAGTTGCTCG-TGGCCACCTTCTTCCCTTAGG----TGC----GGACCAGTCCTCTCTTTTGCGTTAGGGCTAACA-TAGAGAGA s panTro5.chr17 16284687 288 + 83181570 TATTGAGAATGGGAACTCTTAATAGAGATTAGAATATCATCAACCTATGAGAACAGGTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATATTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCAAAACCTTCCATTCAGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACAGTTGCTCG-TGGCCACCTTCTTCCCTTAGG----TGT----GGACCAGTCCTCTCTTTTGTGTTAGGGCTAACA-TAGAGAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189550 288 + 83442489 TATTGAGAATGGGAACTCTTAATAGAGATTAGAATATCATCAACCTATGAGAACAGGTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATATTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCAAAACCTTCCATTCAGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACAGTTGCTCG-TGGCCACCTTCTTCCCTTAGG----TGT----GGACCAGTCCTCTCTTTTGTGTTAGGGCTAACA-TAGAGAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024585 288 + 4267968 TATTGAGAATGGGAACTCTTAATAGAGATTAGAATATCATCAACCTATGAGAACAGGTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATATTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCAAAACCTTCCATTCAGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACAGTTGCTCG-TGGCCACCTTCTTCCCTTAGG----TGT----GGACCAGTCCTCTCTTTTGCATTAGGGCTAACA-TAGAGAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2006906 288 - 2193130 TATTGAGAATGGGAACTCTTAACAGAGATTAGAATTTCATCAACATATGAGAACAGTTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGACATTCTCTCCAAAACTTGCAGACC--------ATATATTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCAAAACCCTCCATTCAGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGCTCG-TGGCCACCTTCTCTCCTTAGG----TGT----GGACCACTCCTCTCTTTTGCTTTAGGGCTAACA-TGGAGAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078473 287 - 77216781 -ATTGAGAATGGGAACTTTTAATAGAGATGAGAATATCCTCAACCTATGAGAACAGGTACAGAGGGGCAGGAGGTAGAGTGGCGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATACTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCCAAACCCTCCATTCAGGGCTGCGGA------TACCAG------AGGGCAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTCGCCTTAAG----TGT----GGACCAGTCCTCTCTCTTGCGTTAGGGTTAACA-TGGAGAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27990735 287 - 80997621 -ATTGAGAATGGGAACTTTTAATAGAGATGAGAATATCCTCAACCTATGAGAACAGGTACAGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATACTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCCAAACCCTCCATTCAGGGCTGCGGA------TACCAG------AGGGCAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTCGCCTTAAG----TGT----GGACCAGTCCTCTCTCTTGCGTTAGGGTTAACA-TGGAGAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048441 287 + 10377808 -ATTGAGAATGGGAACTTTTAATAGAGATGAGAATATCCTCAACCTATGAGAACAGGTACAGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATACTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCCAAACCCTCCATTCAGGGCTGCGGA------TACCAG------AGGGCAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTCGCCTTAAG----TGT----GGACCAGTCCTCTCTCTTGCGTTAGGGTTAACA-TGGAGAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933391 287 - 8458610 -ATTGAGAATGGGAACTTTTAGTAGAGATGAGAATATCCTCAACCTATGAGAACAGGTACAGAGGGGCAGGAGATAGAGTAGGGGTTGGAAATTCTCTCCAAAACTTGCAGATC--------ATATACTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCCAAACCCTCCATTCAGGGCTGCGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTTGCCTTAAG----TGT----GGACCAGTCCTCTCTCTTGCGTTAGGGTTAACA-TGGAGGGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64888907 287 + 75148670 -ATTGAGAATGGGAACTTTTAATAGAGAGGAGCATATCCTCAACCTATGAGAACAGGTACAGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATACTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCCAAACCCTCCATTCAGGGCTGTGGA------AACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTCGCCTTAAG----TGT----GGACCAGCCCTCTCTCGCGCGTTAGGGCTAACA-TGGAGAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118429 287 + 4244037 -ATTGAGAATGGGAACTTTTAATAGAGATGAGAATATCCTCAACCTATGAGAACAGGTACAGAGGGGCAGGAGGTAGAGTAGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------ATATCCTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCCAAACCCTCCATTCAGGGCTGCGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTCGCCTTAAG----TGT----GGACCAGTCCTCTCTCTTGCGTTAGGGTTAACA-TGGAGGGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2140789 287 + 4569836 -ATTGAGAATGGGAACTTTTAATAGAGATGAGAATATCCTCAACCTATGAGAACAGGTAGAGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATTCTCTCCAAAACTTGCAGACC--------CTATACTTAGGTGTGGTAGAGATGTCCAGGG-AAAAATACCCAAAACCCTCCATTCAGGGCTGCGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGCTTG-TGGCCACCTTCTCGCCTTAAG----TGT----CGACCAGTCCTCTCTCTTGCATTAGGGCTAACA-TGGAGAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46112930 293 - 159171411 CATTGAGAATGAGAACTCTTAATA-AGATGAGAATATCATCAACCTATGAGAACAGGTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAATCCTCTCTAAAACTTGCAGACCATATATATATATATTCAGGTGTGATA-AGATGTCCAGGG-AAAAACACCAAAAACCCTGCATTCTGGGCTGTGGA------CACCAG------AGGGCAGCTAAGGAGACCAGCCCTCAACACTTGTTCG-GGGCCACCTTCTCTCCGCAGG----TGT----GGGCCAGTCCTCTCTCTCGCGTTA-GGCTAACA-TGGCGAGA i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1823577 291 + 3513951 TATTAAGAATGAGAACTCTTAATA-AGATGAGAATATCATCAACCTATGAGAACAGGTAGGGAGGGGCAGGAGGTAGAGTGGGGGTTGGAAGTCCTCTCTAAAACTTGCAGACC--ATACATATATATTCAGGTGTGATAGAGATGTTCAGGG-AAAAACATCAAAAACCCTCCA-TCTGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGTTCA-TGGCCACCTTCTCTCCTTAGG----TGT----GGGCCAGTCCTCTCTCTTGCGTTA-GGCTAACA-TGGAGAGA i saiBol1.JH378271 I 192 C 0 s cebCap1.NW_016107730v1 1872060 291 + 1920343 TATTGAGAATGAGAACTCTTACTA-AGATGAGAATATCATCAACCTATGAGAACAGGTAGGGA-GGGCAGGAGGTAGAGTGGGGGTTGGAAATCCTCTCTAAAACTTGCAGACC--ATATATATATATTCAGGTGTGATAGAGACGTCTAGGGAAAAAACACCAAAAACCCTCCA-TCTGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAACACTTGTTCA-TGGCCACCTTCTCTCCTTAGG----TGT----GGGCCAGTCCTCTCTCTTGCATTA-GGCTAACA-TGGAGAGA i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 6988780 294 - 7032639 TACTGAGAATGAGAACTCTTAATA-AGGTAAGAATATCATCAATCTGTGAGAACAGGTAGGGAGGAGCAGGAGGTAGAGTGGGGGTTGGAAATCCTCTCTAAAACTTGCAGACCATATATATATATATTCAGGTGTGATAGAGATGTCCAGGG-AAAAACACCAAAAACCCTCCATTCTGGGCTGTGGA------TACCAG------AGGACAGCTAAGGAGACCAGCCCTCAATGCTTGTTCG-TGGCCACCTTCTGTCGTTAGG----TGT----GGGCCAGTCCTCTCTCTTGCATTA-GGCTAACA-TGGAGAGA i aotNan1.NW_018502359v1 I 1 C 0 s canFam3.chr9 21421892 231 + 61074082 TATTAGGAACAAGAACTCTT-GTAGAAATTAGAA---CACCAACCTATGAAAAAAGGTAGGGCAAGGCGAGAGGTAGAAT-GGAACTAGAGCTTTTATCCCAAACTTACAGGCC--------ATGTACTTAGGC------------------------------------------------------A------TACGTG------AGGACACCTGAGGAGACAGGCCCTCAACATTTGCTCA---GCTCCCTTCCCACCCCGGACATCTCT----GGGCCA-TCCTCTCCCT-GTGTTAGGGCTGACAGTGCTGAGT i canFam3.chr9 I 1 I 1 s dasNov3.JH570468 401032 302 - 852752 CATTAGGAATGGGAGCTCTCAGTAAAGATTAGCACATTATCAACCTACGGCAGCAAGTAGAACAAGGCAGGGGGTAGGGTGGTCCCTGGGATTCTGATCCAGAACTTAC-GACC--------CTATATTTAGGTGTGGTGGAGGGTTCCAGGG-GAAAATCCCCAAAGTCTT-CATTCAGGGTTGTGGATGGACTTATTAAACATTCAGGATACCTGAGGAGACAGGCCCTCAACACCTGTTCACCTGCTACCTTCTCATCTCAGG----TGTCTGAGGGCCAAGCATCTC-CTTGCATCAAGTCTGGCC-TGGAGAGC i dasNov3.JH570468 C 0 I 1 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I e otoGar3.GL873537 22803797 941 + 28711273 I a score=357059.000000 s hg38.chr17_GL383564v2_alt 95813 37 + 133151 ATGCTGAGTCTCAAAGA----TTGGTCACTCGCTACT-CCAT s panTro5.chr17 16284975 37 + 83181570 ATGCTGAGTGTCAAAGA----TTGGTCACTCGCTACT-CCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189838 37 + 83442489 ATGCTGAGTGTCAAAGA----TTGGTCACTCGCTACT-CCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024873 37 + 4267968 ATGCTGAGTCTCAAAGA----TTGGTCACTCGCTACT-CCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007194 37 - 2193130 ACCCTGAGTCTCAAAGA----TTGATCACTCTCTACT-CCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078760 37 - 77216781 ATGCTGAGTCTCAAAGA----TTGATCACTCACTACT-CCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991022 37 - 80997621 ATGCTGAGTCTCAAAGA----TTGATCACTCACTACT-CCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048728 37 + 10377808 ATGCTGAGTCTCAAAGA----TTGATCACTCACTACT-CCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933678 37 - 8458610 ATGCTGAGTCTCAAAGA----CTGATCACTCACTACT-CCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889194 37 + 75148670 ATGCTGAGTCTCAAAGA----TTGATTACTCACTACT-CCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118716 37 + 4244037 ATGCTGAGTCTCAAAGA----TTGATCACTCACTACT-CCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141076 37 + 4569836 ATGCTGAGTCTCAAAGA----TTGATCACTCACTACT-CCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113223 37 - 159171411 ATGCTGAGTCTCAAAGA----CTGACCACTCACTGTT-CCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1823868 37 + 3513951 ATGCTGAGTCTCAAAGA----CTGACCTCTCACTGTT-CCAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872351 38 + 1920343 ATGCTGAGTCTCAAAGC----CTGACCACTCTCTGTTCCCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989074 37 - 7032639 CTGCTGAGTCTCAAAGC----CTGACCACTCACTGTT-CCAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22804738 41 + 28711273 ATGTTGAGCTTCTAAAAGTCTCTGATCACTCACTATG-CTAA i otoGar3.GL873537 I 941 C 0 s canFam3.chr9 21422124 41 + 61074082 GTGCCAGGTCTCTGAAAGGCTCTAGTCACGTGCTAAT-CCAC i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 401335 29 - 852752 ATAAAGGGCCTCTGAAA-----GAGTTTCTGGAT-------- i dasNov3.JH570468 I 1 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992538 331 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I a score=694843.000000 s hg38.chr17_GL383564v2_alt 95850 63 + 133151 -TTGTCTTCA-GCAGCACAGTCCT-ATAGAATGGAGAACAGATGTTCCTGAGGATCTGAGAGTCTG s panTro5.chr17 16285012 63 + 83181570 -TTGTCTTCA-GCAGCACAGTTCT-ATAGAATGGAGAACAGATGTCCCTGAGGATCTGAGAGTCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189875 63 + 83442489 -TTGTCTTCA-GCAGCACAGTTCT-ATAGAATGGAGAACAGATGTTCCTGAGGATCTGAGAGTCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024910 63 + 4267968 -TTGTCTTCA-GCAGCACAATCCT-ATAGAATGGAGAACAGATGTTTCTGAGGATCTGAGAGTCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007231 63 - 2193130 -TTGTCTTCA-GCAGCAGAATCCT-ATAGAATGGAGAATAGATGTTCCTGAGGATCTGAGAGTCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078797 55 - 77216781 -CTGTCTTCA-GCAGCACAATCCTAATAGAATAGAGAATA---------GAGGATCTGAGAGTCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991059 54 - 80997621 -CTGTCTTCA-GCAGCACAATCCT-ATAGAATAGAGAATA---------GAGGATCTGAGAGTCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048765 54 + 10377808 -CTGTCTTCA-GCAGCACAATCCT-ATAGAATAGAGAATA---------GAGGATCTGAGAGTCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933715 54 - 8458610 -CTGTCTTCA-GCAGCACAATCCT-ATAGAATAGAGAATA---------GAGGATCTGAGAGTCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889231 54 + 75148670 -CTGTCTTCA-GCAGCACAACCCT-ATAGAATAGAGAATA---------GAGGATCTGAGAGTCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118753 54 + 4244037 -CTGTCTTCG-GCAGCACAATCCT-ATAGAATAGAGAATA---------GAGGATCTGAGAGTCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141113 54 + 4569836 -TTGTCTTCA-GCAGCACAATCCT-ATAGAATGGAGAATA---------GAGGATCTGAGAGTCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113260 62 - 159171411 -TCGTCCTCA-GCAGCACAATCCT-ATAGAGTGGAGAATAGGTGCTCTTGAGGATC-GAGAGTCTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1823905 63 + 3513951 -TCATCTTCA-GCAGCACAATCCT-ATGGAGTGGAGAATAGGTGCTCCTGAGGATCTGAGAGTCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872389 63 + 1920343 -TTGTCTTCA-GCAGCACAATCCT-ATAGAGTGGAAAATAGGTGCTCCTGAGGATCTGAGAGTCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989111 63 - 7032639 -TCGTCTTCA-GCAGCACAATCCT-ATAGCGTGGAGAATAGGTGCTCCCGAGAATCTAAGAGTCTG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2992869 63 + 8555354 -TTGTCTTCA-GGAGCAGAATCCT-ACAGAATGGAGAACAGGTGGTCCCGAAGATCTGAGAGTCTG i proCoq1.NW_012135969v1 I 331 I 78 s otoGar3.GL873537 22804779 63 + 28711273 -TTGTTTTTA-GGAGAAGAATGCC-ATAGAATGGAAGACACATGGTCCTGAAGATCTGCAAGTCCC i otoGar3.GL873537 C 0 I 6 s canFam3.chr9 21422165 64 + 61074082 -TTGTCCTCAGGGAGCAGACTCCT-AGAGAACAGAGAATAGACATTCCTGTAGCTCTGAGAGTCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 401364 58 - 852752 CTGACCTTAG-GGAGCAGAATCCT-ATAGAGCA------AGATGTTCCCAATAAGCTGAGAGTCTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35904840 464 - 65901067 I a score=362428.000000 s hg38.chr17_GL383564v2_alt 95913 37 + 133151 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATATAAAACAT s panTro5.chr17 16285075 37 + 83181570 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATATAAAACAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189938 37 + 83442489 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATATAAAACAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4024973 37 + 4267968 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATATAAAACAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007294 37 - 2193130 GGCTCCTTT-----TTAGTGGAAGTT-----------------ACTGTATACAAAACAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078852 37 - 77216781 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATACAAAACAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991113 37 - 80997621 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATACAAAACAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048819 37 + 10377808 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATACAAAACAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933769 37 - 8458610 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATACAGAACAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889285 37 + 75148670 GGCTCCTTT-----TTAGTGGAAGAT-----------------CATGTATACAAAACAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118807 37 + 4244037 GGCTCCTTT-----TTCGTGGAAGAT-----------------CATGTATACAAAACAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141167 37 + 4569836 GGCTCCTTT-----TTAGTGGAAGCT-----------------CATGTATACAAAACTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113322 37 - 159171411 TGCCCCTTT-----TTAGTGGAAGAT-----------------CATGCATACAAAACAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1823968 37 + 3513951 TGCCCTTTT-----TTAGTGGAAGAT-----------------TATGCATGCAAAACAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872452 37 + 1920343 TGCCCCTTT-----TTAGTGGAAGAT-----------------CATGCATGCAAAACAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989174 37 - 7032639 TGCCCCTTT-----TTAGTGGAAGAT-----------------CATGCACACAAAACAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22804848 42 + 28711273 GGCTGACTGAAATACTAATTGAAGAC-----------------CACACATACAAAGCCC i otoGar3.GL873537 I 6 C 0 s canFam3.chr9 21422229 13 + 61074082 --------T-----GCCCCAGAAGAC--------------------------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 401422 54 - 852752 TGTCCCTTT-----TCAGTAGAGGACCACTGTTAATTGAGGACCACAAGCACAAAACAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2992932 78 + 8555354 I e micMur3.chr16 35904840 464 - 65901067 I a score=477535.000000 s hg38.chr17_GL383564v2_alt 95950 33 + 133151 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT s panTro5.chr17 16285112 33 + 83181570 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16189975 33 + 83442489 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025010 33 + 4267968 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007331 33 - 2193130 TTCTCTATTTGAGTTTGGAAGAGAAGAATCAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078889 33 - 77216781 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991150 33 - 80997621 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048856 33 + 10377808 TTATTTATTTGAGTTTGGAAGAGAAGAATCAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933806 33 - 8458610 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889322 33 + 75148670 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118844 33 + 4244037 TTCTTTATCTGAGTTTGGAAGAGAAGAATCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141204 33 + 4569836 TTCTTTATTTGAGTTTGGAAGAGAAGAATCAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113359 29 - 159171411 TTC----TTTGAGTTTGGAAGAGAAGAATCAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824005 29 + 3513951 TTC----TTTGAGTTTGGAAGAGAAGAATCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872489 29 + 1920343 TTC----TTTGAGTTTGGAAGAGAAGAATCAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989211 29 - 7032639 TTC----TTTGAGTTTGGAAGAGAAGAATCAGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35905304 33 - 65901067 TTCTTTATTTGGGTTTGGCAGAGAAGAATCAGT i micMur3.chr16 I 464 I 36 s proCoq1.NW_012135969v1 2993010 33 + 8555354 TTCTTTATTTGGGTTTGGCAGAGAAGAATCAGT i proCoq1.NW_012135969v1 I 78 C 0 s otoGar3.GL873537 22804890 33 + 28711273 TTCTTTATTTGAGCTTTACAGAGAAGAAATAAT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21422242 32 + 61074082 -TCCATCTTTGACTTTGCCAGAGAAGAATTAGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 401476 26 - 852752 -------CATGAGTTTGACAAAGAAGGTGCAGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I a score=288577.000000 s hg38.chr17_GL383564v2_alt 95983 32 + 133151 AGAAAAGGTCTTTATAAACTTTAA----AAATAACC s panTro5.chr17 16285145 32 + 83181570 AGAAAAGGTCTTTATAAACTTTAA----AAATAACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190008 32 + 83442489 AGAAAAGGACTTTATAAACTTTAA----AAATAACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025043 23 + 4267968 AGAAAAGGT---------CTGTAA----AAATAACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007364 32 - 2193130 AGAAAAGGTCTTTATCAACTTTAA----AAATAACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078922 36 - 77216781 AGAAAAGGTCTTTATCAACTTTAAAAATAAATAACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991183 36 - 80997621 AGAAAAGGTCTTTATCAACTTTAAAAATAAATAACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048889 36 + 10377808 AGAAAAGGTCTTTATCAACTTTAAAAATAAATAACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933839 36 - 8458610 AGAAAAGGTCTTTATCAACTTTAAAAATAAATAACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889355 36 + 75148670 AGAAAAGGTCTTTATCAACTTTAAAAATAAATAACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118877 36 + 4244037 AGAAAAAGTCTTTATCAACTTTAAAAATAAATAACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141237 36 + 4569836 AGAAAAGGTCTTTATCAACTTTAAAAATAAATAACC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113388 36 - 159171411 AGAAAGTATCTTTATCAACTTTCAAAATAAATAATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824034 36 + 3513951 AGAAAATATCTTTATCAACTTTCAAAATAAATAATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872518 36 + 1920343 GGAAAATATCTTTATCAACTTTCAAAATAAATAATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989240 32 - 7032639 AGAAAATATCTTTATCAACTTTCA----AAATAACG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2993043 32 + 8555354 AGAACATATTTTCACCAACTTTAAAAATAAAT---- i proCoq1.NW_012135969v1 C 0 I 4 s otoGar3.GL873537 22804923 13 + 28711273 AG-------------------TAGAAATAAGT---- i otoGar3.GL873537 C 0 I 4 s canFam3.chr9 21422274 34 + 61074082 AGATAATAGTTTTATCAACTTTAA--GTGATTAACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 401502 28 - 852752 AGAAAATATTTTTATCAAGT--------GAATAATG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35905337 36 - 65901067 I a score=1426073.000000 s hg38.chr17_GL383564v2_alt 96015 96 + 133151 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCTTGCTTGGAAGGAGGAGATAAAT-AA s panTro5.chr17 16285177 96 + 83181570 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTCATCATGAATGTCTGCTGCTTGCTTGGAAGGAGGAGATAAAT-AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190040 96 + 83442489 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTCATCATGAATGTCTGCTGCTTGCTTGGAAGGAGGAGATAAAT-AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025066 96 + 4267968 TGGATAGGATACAGATTTCTATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCTTGCTTGGAAGGAGGAGATAAAT-AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007396 96 - 2193130 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAAAGTCTGCTGCTTGCTTGGAAGGAGGAGATAAAT-AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30078958 96 - 77216781 TGGATAGGATACAGAATTCAATTAAATCAATGTAGAAAGTCACCTCAT-CGTTAATCATGAATGTCTGCTGCCTGCTTGGAAGGGGGAGATAAAT-AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991219 96 - 80997621 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CGTTAATCATGAATGTCTGCTGCCTGCTTGGAAGGGGGAGATAAAT-AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2048925 96 + 10377808 TGGATAGGATACAGAATTCAATTAAATCAATGTAGAAAGTCACCTCAT-CGTTAATCATGAATGTCTGCTGCCTGCTTGGAAGGGGGAGATAAAT-AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933875 96 - 8458610 TGGATAGGATATAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCCTGCTTGGAAGGGGGAGATAAAT-AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889391 96 + 75148670 TGGAGAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCCTGCTTGGAAGGAGGAGATAAAT-AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2118913 96 + 4244037 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCCTGCTTGGAAGGAGGAGATAAAT-AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141273 96 + 4569836 TGGATAGGATACAGATTTCAATTAAATCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCTTGCTTGGAAGGAGGAGATAACT-AG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113424 97 - 159171411 TGGTTAGGATACAGATTTCAATTAAGTCAATGTAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCTTGCTTGGAAGGAGGAAATAAATAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824070 97 + 3513951 TGGATAGGATACAGATTTCAATTAAGTCAATGTAGAAAGTCACCTCAT-CATTAATCATGAACGTCTGCTGCTTGCTTGGAAGGAGGAGATAAATAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872554 96 + 1920343 TGGATAGGATACAGATTTCAATTAAGTCAATATAGAAAGTCACCTCAT-CATTAATCATGAATGTCTGCTGCTTGCTT-GAAGGAGGAGATAAATAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989272 97 - 7032639 TGGATAGGATACAGATTTCAATTAAGTCAATGTAGAACGTCACCTCAT-CATTAATCATGAATGTCTGCTGCTTGCTTGGAAGAAGGAGACAAATAAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35905373 95 - 65901067 TGGATATGATACAGATTTCAATTAAATCAATGTGG-AAGTCACATTAT-CGTTAATCATGAATGTCTGTGGCTTACTTGGAATGAGGAGATAAAT-AA i micMur3.chr16 I 36 I 149 s proCoq1.NW_012135969v1 2993079 96 + 8555354 TGTATATGATACAGATTTCAATTAAATCAATGTGGAAAGTCACATTAT-TGTTAATAATGAATGTCTGCTGCTTGCTTGGAGTGAGGAGATAAAT-AA i proCoq1.NW_012135969v1 I 4 I 1 s otoGar3.GL873537 22804940 70 + 28711273 GGAATATGATACAGATTCAA--TAAATCAATGTGGACAGCCACATTGT-TATTAAT------------------------AGTGAGGAGATAAGT-AA i otoGar3.GL873537 I 4 I 1 s canFam3.chr9 21422308 92 + 61074082 TGGTTACAATACAGATCTCAATTAAAGTAATGCAGAAAGTCAC----T-TATTAATAATGAATGTCTGCTGCTTGCTTAGAATAAGAAGAGAAAG-AA i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 401530 97 - 852752 GGGAAATAATAGTGATCTCAACAAAATCAACATAGAAAGTCACATGATATATTAATAATGAATGTCTGCTATTTGCTTAAAATGAGGAGAGCCAG-AA i dasNov3.JH570468 C 0 I 1 e mm10.chr11 22071454 1561 - 122082543 I a score=723912.000000 s hg38.chr17_GL383564v2_alt 96111 63 + 133151 TGGGTTCAGAATCCTTTCTTTCTCTCT-T----------GTATATTTCAGCAACAATGCAGAGGCAGG--------------AAAAAA s panTro5.chr17 16285273 63 + 83181570 TGGGTTCAGAACGCTTTCTTTCTCTCT-T----------GTATATTTCAGTAACAATGCAGAGGCAGG--------------AAAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190136 63 + 83442489 TGGGTTCAGAACGCTTTCTTTCTCTCT-T----------GTATATTTCAGTAACAATGCAGAGGCAGG--------------AAAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025162 63 + 4267968 TGGGTTCAGAACGCTTTCTTTCTCTCT-T----------GTATATTTCAGCAACAATGCAGAGGCAGG--------------AAAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007492 63 - 2193130 TGGGTTCAGAATGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAATGCAGAGGCAGG--------------AAAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079054 67 - 77216781 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAAAGCAGAGGCAGG----------AAAAAAAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991315 67 - 80997621 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAAAGCAGAGGCAGG----------AAAAAAAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049021 69 + 10377808 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAAAGCAGAGGCAGG--------AAAAAAAAAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1933971 64 - 8458610 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAAAGCAGAGGCAGG-------------AAAAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889487 77 + 75148670 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GAATATTTCAGCAACAAAGCAGAGGCAGGGaaaaaaaaaaaaaaaaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119009 65 + 4244037 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAAAGCAGAGGCAGG------------AAAAAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141369 65 + 4569836 TGGGTTCAGAACGCTCTCTTTCTCTCT-T----------GTATATTTCAGCAACAAAGCAGAGGCAGG------------AAAAAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113521 62 - 159171411 TAGGTTCAGAATGCTGTCTTTCTCTCT-T----------GTATATTTCAGCAACAGTGCAGAGGCAGC---------------AAAAA i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1824167 62 + 3513951 TAGGTTCAGAATGCTGTCTTTCTCTCT-T----------GTGTATTTCAGCAACAGTGCAGAGGCAGG---------------AAAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1872650 62 + 1920343 TAGGTACAGAACACTGTCTTTCTCTCT-T----------GTATATTTCAGCAACAGTGCAGAGGCAGG---------------AAAAA i cebCap1.NW_016107730v1 C 0 I 315 s aotNan1.NW_018502359v1 6989369 62 - 7032639 TAGGTTCAGAATGCTGTCTTTCTCTCT-T----------GTTTATTTCAGCAACAGTGCAGAGGCAGG---------------AAAAA i aotNan1.NW_018502359v1 C 0 I 1 s proCoq1.NW_012135969v1 2993176 60 + 8555354 TGGGTTTGGAACTCTCTCTCT---TTT-T----------TTATCTTTCAGCAACAACACAGAGGCAAA--------------CAAAGA i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22805011 53 + 28711273 TAGGTTTGAAATGCTCTC---------------------TTGTATTTCAGCAACAACACAGAGGCAAA--------------AAAAGA i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21422401 73 + 61074082 TAGGTCTGGAACTCttttttttttttt-tttttttttAATTGTCTTTCAGCAGTGACACAGAAGGAGG--------------GAAAGA i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 401628 64 - 852752 TGGGTCCCAAATtctctctctctctctct----------ctctctttcAGTAGCAACACAGAGGCAGG----------TTCTGA---- i dasNov3.JH570468 I 1 I 6 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35905468 149 - 65901067 I a score=5841.000000 s hg38.chr17_GL383564v2_alt 96174 2 + 133151 AA s panTro5.chr17 16285336 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190199 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025225 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007555 2 - 2193130 AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079121 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991382 2 - 80997621 AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049090 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934035 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889564 2 + 75148670 aa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119074 2 + 4244037 AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141434 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113584 1 - 159171411 A- i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1824229 1 + 3513951 A- i saiBol1.JH378271 C 0 C 0 s aotNan1.NW_018502359v1 6989432 1 - 7032639 A- i aotNan1.NW_018502359v1 I 1 I 314 s proCoq1.NW_012135969v1 2993236 2 + 8555354 AA i proCoq1.NW_012135969v1 C 0 I 2 s otoGar3.GL873537 22805064 2 + 28711273 AA i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21422474 2 + 61074082 AA i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 401698 2 - 852752 AA i dasNov3.JH570468 I 6 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35905468 149 - 65901067 I e cebCap1.NW_016107730v1 1872712 315 + 1920343 I a score=72891.000000 s hg38.chr17_GL383564v2_alt 96176 8 + 133151 A-----GCAAGAA s panTro5.chr17 16285338 8 + 83181570 A-----GCAAGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190201 8 + 83442489 A-----GCAAGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025227 8 + 4267968 A-----GCAAGAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007557 8 - 2193130 A-----GCAAGAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079123 8 - 77216781 A-----GCAAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991384 8 - 80997621 A-----GCAAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049092 8 + 10377808 A-----GCAAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934037 8 - 8458610 A-----GCAAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889566 8 + 75148670 a-----GCAAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119076 8 + 4244037 A-----GCAAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141436 8 + 4569836 A-----GCAAGAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113585 8 - 159171411 A-----TCAAGAA i calJac3.chr5 C 0 I 307 s saiBol1.JH378271 1824230 8 + 3513951 A-----TCAAGAA i saiBol1.JH378271 C 0 I 307 s proCoq1.NW_012135969v1 2993240 13 + 8555354 AAAACCACAAGAA i proCoq1.NW_012135969v1 I 2 C 0 s otoGar3.GL873537 22805068 8 + 28711273 A-----GTAAGAA i otoGar3.GL873537 I 2 C 0 s canFam3.chr9 21422479 8 + 61074082 A-----ACAAGAT i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 401700 7 - 852752 G-----GTAGGG- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35905468 149 - 65901067 I e aotNan1.NW_018502359v1 6989433 314 - 7032639 I e cebCap1.NW_016107730v1 1872712 315 + 1920343 I a score=653538.000000 s hg38.chr17_GL383564v2_alt 96184 55 + 133151 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGGCTTTCCCAGGTGCAAACTTA s panTro5.chr17 16285346 55 + 83181570 TTCTTAAAGGCAAGGTTCTGTTATTCAACCCTGGGCTTTCCCAGATGCAAACTTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190209 55 + 83442489 TTCTTAAAGGCAAGGTTCTGTTATTCAACCCTGGGCTTTCCCAGATGCAAACTTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025235 55 + 4267968 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGTGCTTTCCCAGGTGCAAACTTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007565 55 - 2193130 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGGCTTTCCCAGGTGCAAACTTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079131 55 - 77216781 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGACTTTCCCAGGTGCAAGTTTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991392 55 - 80997621 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGACTTTCCCAGGTGCAAGTTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049100 55 + 10377808 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGACTTTCCCAGGTGCAAGTTTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934045 55 - 8458610 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGACTTTCCCAGGTGCAAGTTTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889574 42 + 75148670 TTCTTAAAGGCGAGGTT-------------CTGGGCTTTCCCAGGTGCAAGCTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119084 55 + 4244037 TTCTTAAACGCGAGTTTCTGTTATTCAACCCTGGGCTTTCCCAGGTGCAAGCTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141444 55 + 4569836 TTCTTAAAGGCGAGGTTCTGTTATTCAACCCTGGGCTTTCCCAGGTGCAAGCTTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113900 53 - 159171411 TTCTTAAAGGAGAGCTCCTGTAATTCAACTCTGGG--CTCCCAGGTGTAGATTTA i calJac3.chr5 I 307 C 0 s saiBol1.JH378271 1824545 55 + 3513951 TTCTTAAAGATGAGCTTCTGCAATTCAACCCTGGGCTCTCCCAGGTGTGGACTTA i saiBol1.JH378271 I 307 C 0 s cebCap1.NW_016107730v1 1873027 55 + 1920343 TTCTTAAAGGTGAACTTCTGTAATTCAACCCTGGGCTCTCCCAGGTGTAGACTTA i cebCap1.NW_016107730v1 I 315 C 0 s aotNan1.NW_018502359v1 6989747 55 - 7032639 TTCTTAAAGGTGAGCTTCTGTAATTCAACCCTGGGCTCTCCCAGGTGTAGACTTA i aotNan1.NW_018502359v1 I 314 C 0 s proCoq1.NW_012135969v1 2993253 55 + 8555354 CTCTCAAAGGTAAGGGTCTGATATTCAACCCTGGGCTCTTCCTGGTTTAAACTTA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22805076 54 + 28711273 CTCTTAAAGGTAAGTGTCTG-TATTCAACTCTGGGCTCTTCCAGATTTAAACTTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21422487 54 + 61074082 CTCTTACTAA-GAATTCCTTTCAGTCAGCTCTGGGCTCTCCCAGGTTTAGGGTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 401707 51 - 852752 ----TAAAAGTAAGGTTCTGCTATTCAACCCTTGGCTGTCCTGGATTAAAACTGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35905468 149 - 65901067 I a score=442993.000000 s hg38.chr17_GL383564v2_alt 96239 33 + 133151 ATTTCTCCTTTCTGCAG--GTTCCCAGGTCTGCAG s panTro5.chr17 16285401 33 + 83181570 ATTTCTCCTTTCCACAG--GTTCCCAGGTCTGCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190264 33 + 83442489 ATTTCTCCTTTCCACAG--GTTCCCAGGTCTGCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025290 33 + 4267968 ATTTCTCCTTTCCACAG--GTTCCCAGGTCTGCCG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007620 33 - 2193130 ATTTTTCCTTTTCACAG--GTTCCCAGGTCTGCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079186 33 - 77216781 GTTTCTCTTTTCCACAG--GTTCCCAGGTCTGCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991447 33 - 80997621 GTTTCTCTTTTCCACAG--GTTCCCAGGTCTGCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049155 33 + 10377808 GTTTCTCTTTTCCACAG--GTTCCCAGGTCTGCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934100 33 - 8458610 GTTTCTCTTTTCCACAG--GTTCCCAGGTCTGCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889616 33 + 75148670 ATTTCTCTTTTCCACAG--GTTCCCAGGTCTGCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119139 33 + 4244037 ATTTCTCTTTTCCACAG--GTTCCCAGGTCTGCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141499 33 + 4569836 GTTTCTCTTTTCCACAG--GTTCTCAGGTCTGCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113953 33 - 159171411 ATTTCTCCTTTCCACAG--GTTCCCAGGTCTGCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824600 33 + 3513951 TTTTCTCCTTTCCACAG--GTTCCCAGGTCTGCAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873082 33 + 1920343 ATTTCTCCTTTCCACAG--GTTCCCAGGTCTGCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989802 32 - 7032639 A-TTCTCCTTTCCACAG--GTTCCCAGGTCTGCAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35905617 33 - 65901067 ATTTCTCCTTTCTGCAG--GGTCCCTGGTCCACAG i micMur3.chr16 I 149 C 0 s proCoq1.NW_012135969v1 2993308 33 + 8555354 ATTTCTCCTTTCCACGG--GGTCCCAGGTCCACAA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22805130 33 + 28711273 ATTTCTCCTTTTTGAGG--AGTCCCAGGTCACCAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21422541 31 + 61074082 ATTTCTCC-TCCCATAA--GACCCCA-GCCCACCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 401758 31 - 852752 ----ATGTTTTCtgcggtcacccctcgggctgaag i dasNov3.JH570468 C 0 I 980 e mm10.chr11 22071454 1561 - 122082543 I a score=911211.000000 s hg38.chr17_GL383564v2_alt 96272 64 + 133151 TCGCTGAGGTCATCAGCTCCTCGAGCCAGGCCTTCTCAGAAAACAGTGCTCTGAGGGGAGAGGC s panTro5.chr17 16285434 64 + 83181570 TCGCTGAGGTCATCAGCTCCTCGAGCCAGGCCTTCTCAGAAAACAGTGCTCTGAGGGAAGAGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190297 64 + 83442489 TCGCTGAGGTCATCAGCTCCTCGAGCCAGGCCTTCTCAGAAAACAGTGCTCTGAGGGAAGAGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025323 64 + 4267968 TCGCTGAGGTCATCAGCTCCTCGAGCCAGGCCTTCTCAGAAAACAGTGCTCTGAGGGGAGAGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007653 64 - 2193130 TCGCTGAGGTCATCAGCCCCTAGAGTCAGGCCTTCTCAGAAAACAGTGCTCTGAGGGGAGAGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079219 61 - 77216781 TCTCTGAGGTCATTAG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991480 61 - 80997621 TCTCTGAGGTCATTAG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049188 61 + 10377808 TCTCTGAGGTCATTAG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934133 61 - 8458610 TCTCTGAGGTCATTAG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889649 61 + 75148670 TCTCTGAGGTCATTAG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119172 61 + 4244037 TCTCTGAGGTCATTAG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141532 61 + 4569836 TCTCTGAGGTCATTGG---CTAGAGCCAGGCCTTCTCAGAAAACACTGCTCTGAGGGGAGAGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46113986 64 - 159171411 TCGCTGAGGTCATCAGCTCCTAGAGCCAGGCCTTCTCAGAAAACAGTGCTCTGAGGGGAGAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824633 64 + 3513951 TCGCTGAGGTCATCAGCTCCTAGAGCCAGGCCTTCTCAGAAAACAGGGCTCTGAGGGGAGAGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873115 64 + 1920343 TCGCTGAGGTCATCAGCTCCTAGAGCCAGGTCTTCTCAGAAAACAGTGCTCTGAGGAGAGAGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989834 64 - 7032639 TCGCTGAGGTCATCAGCTCCTAGAGCCAGGCCTTCTCAGAAAACAGCGCTCTGAGGGGAGAGAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35905650 64 - 65901067 TCGCTGAGGCCATCAGCCCCTGGGGCGAGGCCCTCTCTGAAAACGGTGCTCTCGGGGCAGAGGC i micMur3.chr16 C 0 I 2 s proCoq1.NW_012135969v1 2993341 64 + 8555354 TCGCTGAGGCCATCAGCCCCTAGGGCCAGGCCCTCTCAGAAAGCAGTGATCTAAGGACAGAGGC i proCoq1.NW_012135969v1 C 0 I 2082 s otoGar3.GL873537 22805163 60 + 28711273 ----TGAGGTCATTAGTTCCTAGAGCCAGGCTTGCTCCTAAAACAGTGCTCTCAGGGCAGAGGC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21422572 50 + 61074082 TTGCTGAGGTCAACCGTT-CCAGAGCCGGGCCTTCCCAGAAAACTGTGCTC------------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 402769 63 - 852752 TCACTGAGGACATTAGTTCCTAGAGCCAATCCTTCTCAGACAATGAAGCTCTCAGAGGAGAGG- i dasNov3.JH570468 I 980 C 0 e mm10.chr11 22071454 1561 - 122082543 I a score=667056.000000 s hg38.chr17_GL383564v2_alt 96336 54 + 133151 CCATAGCAAGGAAGCAAGGAAACAAGACCCTGGGAAATGTCTCCTAATCCCTGC s panTro5.chr17 16285498 54 + 83181570 CCATAGCAAGGAAGCAAGGAAATCAGACCCCAGGAAATGTCTCCTAATCCCTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190361 54 + 83442489 CCATAGCAAGGAAGCAAGGAAATCAGACCCCAGGAAATGTCTCCTAATCCCTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025387 54 + 4267968 CCATAGCAAGGAAGCAAGGAAACCAGACCCCGGGAAATGTCTCCTAATCCCTGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007717 54 - 2193130 CCATAGCAAGGAAGCAAGGAAACCAGAATACGGGAAATGTCTCCTAATCCCTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079280 54 - 77216781 CCATAACAAGGAAGCAAGGAAACCAGAACCCAGGAAATGTCTCCTAATCCCTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991541 54 - 80997621 CCATAACAAGGAAGCAAGGAAACCAGAACCCAGGAAATGTCTCCTAATCCCTGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049249 54 + 10377808 CCATAACAAGGAAGCAAGGAAACCAGAACCCAGGAAATGTCTCCTAATCCCTGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934194 54 - 8458610 CCATAACAAGGAAGCAAGGAAACCAGAACCCAGGAAATGTCTCCTAATCCCTGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889710 54 + 75148670 CCATAACAAGGAAGCAAGGAAACCAGAACCCAGGAAATGTCTCCTAATCCCTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119233 54 + 4244037 CCATAACAAGGAAGCAAGGAAACCAGAACCCAGGAAATGTCTCCTAATCCCTGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141593 54 + 4569836 CCATAGCAAGGAAGCAAGGAAACCAGAAACCAGGAAATGTCTCCTAATCCCTGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114050 53 - 159171411 TCACAGCAAGGAAGCAAGGAAACTAGAACCT-GGAAATGTCTCTTAATCCCTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824697 53 + 3513951 TCATAGCAAGGAAGCAAGGAAACCAGAACCT-GGAAATGTCTCTTAATCCCCGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873179 53 + 1920343 TCATAGCAAGGAAGCAAGGAAACCAGAACCT-GGAAATGTCTCTTAATCCCCGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989898 53 - 7032639 TCATAGCAAGGAAGCAAGGAAACCAGAAGCT-GGAAATGTCTCTTAATCCCTGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35905716 53 - 65901067 ACAT-GCAAGGAAGCCGGGAAAGCAGCCCCTGGGGAACGTCTCCTGATCCCTGC i micMur3.chr16 I 2 I 2067 s otoGar3.GL873537 22805223 48 + 28711273 CCAT-GTAGGAA-----GGGACCCAGAAGCTGAGCACCATCTCCTGACCCCTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21422622 48 + 61074082 CCATAGCAAGAAAGCAACAGCATCAGAACCCAGAGACTGCCGCCTAAC------ i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 402832 53 - 852752 TCATGGCAAGAAAGCAAGGGAATCAGAACCTGGGAAAT-TTTCCTAATCCATAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I a score=4897001.000000 s hg38.chr17_GL383564v2_alt 96390 454 + 133151 CCCAC----CCTTCCCTGTGAAATAAACCATGATGGCGCTGGGCTATGAGTCTTACCCACTAGGAGATGGTGTGGGATGCTGTGATG-AGA--------AGAAGAATTATGGCTTGTTTTG-GAGGCAACA-TTTTTTGGTCCTGGTTTTGG--ATATATTGTTGACTCCCCTGACCATCAGAGTCCTCCTTTTGAGAGA---CCTGGCCTGGCAGCATTGT--------GGGGTTGTGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATGGTACCTATGTAAGACTCAGTATTC-TTGTTGTTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGATCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGCCTCCTA-ACAGCCTGTTTGCTCCTATTTTTGACAGATGTGAACCGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag s panTro5.chr17 16285552 454 + 83181570 CCCGC----CTCTCCCTGTGAAATAAACCATGATGGCGCTGGGCTATGAGTCTTACCCACTAGGAGATGGTGTGGGATGCTGTGACG-AGA--------AGAAGAATTATGGCTTGTTTTG-GAGGCAACA-TTTTTTGGTCCTGGTTTTGG--ATATATTGTTGACTCCCCTGACCATCAGAGTCCTCCTTTTGAGAGA---CCTGGCCTGGCAGCATTGT--------GGGGTTGTGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATGGTACCTATGTAAGACTCAGTATTC-TTGTTGTTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGATCTACTTTTGATATTGTCTAGTCCCAGCAAAACATTCTACTCAGCCTCCTA-ACAGCCTGTTTGCTCCTATTTTTGACAGATGTGAACCAAGCTCCTA-TTGTCTCAGTTTggagagcttgccttagag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190415 454 + 83442489 CCCGC----CTCTCCCTGTGAAATAAACCATGATGGCGCTGGGCTATGAGTCTTACCCACTAGGAGATGGTGTGGGATGCTGTGACG-AGA--------AGAAGAATTATGGCTTGTTTTG-GAGGCAACA-TTTTTTGGTCCTGGTTTTGG--ATATATTGTTGACTCCCCTGACCATCAGAGTCCTCCTTTTGAGAGA---CCTGGCCTGGCAGCATTGT--------GGGGTTGTGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATGGTACCTATGTAAGACTCAGTATTC-TTGTTGTTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGATCTACTTTTGATATTGTCTAGTCCCAGCAAAACATTCTACTCAGCCTCCTA-ACAGCCTGTTTGCTCCTATTTTTGACAGATGTGAACCAAGCTCCTA-TTGTCTCAGTTTggagagcttgccttagag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025441 453 + 4267968 CCCGC----CCCTCCCTGTGAAATAAACCATGATGGCACTGGGCTATGAGTCTTACCCACCAGGAGATGGTGTGGGATGCTGTGATG-AGA--------AGAAGAATTATGGCTTGTTTTG-GAGGCAACA-TTTTTTGGTCCTGGTTTTGG--ATATATTGTTGACTCCCCTGACCATCAGAGTCCTCC-TTTGAGAGa---cctggcctggcagcattgt--------ggggttgtgaagatcccc--------tgtgtatggaagtgctttataaatggtgcagcatggtacctatgtaagACTCAGTATTC-TTGTTGTTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGATCTAACTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGCCTCCTA-ACAGCCTGTTTGCTCCTATTTTTGACAGATGTGAACCGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2007771 455 - 2193130 CCCAC----CCCTCCCTGTGAAATAAACCATGATGGCACTGGGCTATGAGTCTTACCCACTAGGAGATGGTGTGGGATGCTGTGATG-AGA--------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGG--ATATATTGTTGACTCTCCTGACCATCAAAGTCCTCTTTTCGAGAGa---cctggcctggcagcctctt--------gggtttgtgaagatcccc--------tgtgtatggaagtactttataaatggtgcagcacggtacctatgtaaggctcagtattc-ttGTCATTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGATCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGCCTCCTACAAAGCCTGTTTGCTCCTATTTTTGACGGAGGTGAACTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079334 449 - 77216781 CCTGC----CCCTTCCTGTGAAATAAACCATGATGGTGCCGGGCTATGAGTCTTACCCACTAGGAGATGGTGTAGGATGCTGTGATG------------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGAATATATATTGTTGGCTGCCCTGACCATCAGAGCCCTCTTTTCGAGAGA--------cctggcagcctcgt--------ggagttgtgaagatcccc--------tgtgtatgcaagtactttataaatggtgcagcatggtacctatgtaaggctcagtattc-ttGCCATTGA-CACTTTGACCTTGAATATGAATTCCT-GGGCTCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAGTCTGTTTGCTCCTATTTTTGATAGACATGAACTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27991595 449 - 80997621 CCTGC----CCCTTCCTGTGAAATAAACCATGATGGTGCCGGGCTATGAGTCTTACCCACTAGGAGATGGTGTAGGATGCTGTGATG------------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGAATATATATTGTTGGCTGCCCTGACCATCAGAGCCCTCTTTTCGAGAGA--------CCTGGCAGCCTCGT--------GGAGTTGTGAAGATCCCC--------TGTGTATGCAAGTACTTTATAAATGGTGCAGCACGGTACCTATGTAAGGCTCAGTATTC-TTGTCATTGA-CACTTTGACCTTGAATATGAATTCCT-GGGCTCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAGTCTGTTTGCTCCTATTTTTGATAGACATGAACTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049303 449 + 10377808 CCTGC----CCCTTCCTGTGAAATAAACCATGATGGTGCCGGGCTATGAGTCTTACCCACTAGGAGATGGTGTAGGATGCTGTGATG------------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGAATATATATTGTTGGCTGCCCTGACCATCAGAGCCCTCTTTTCGAGAGA--------CCTGGCAGCCTCGT--------GGAGTTGTGAAGATCCCC--------TGTGTATGCAAGTACTTTATAAATGGTGCAGCACGGTACCTATGTAAGGCTCAGTATTC-TTGTCATTGA-CACTTTGACCTTGAATATGAATTCCT-GGGCTCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAGTCTGTTTGCTCCTATTTTTGATAGACATGAACTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934248 449 - 8458610 CCTGC----CCCTTCCTGTGAAATAAACCATGATGGTGCCGGGCTATGAGTCTTACCCACTAGGAGATGGTGTAGGATGCTGTGATG------------AGAAGAATCATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGAATATATATTGTTGGCTGCCCTGACCATCAGAGTCCTCTTTTCGAGAGA--------cctggcagcctcgt--------ggagttgtgaagatcccc--------tgtgtatgcaagtactttataaatggtgcagcacggtacctatgtaaggctcagtattc-ttGTCATTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAATCTGTTTGCTCCTATTTTTGATAGACATGAACTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64889764 446 + 75148670 CCTGC----CCCTTCCTGTGAAATAAACCATGATGGTGCCGGGCTGTGAGTCTTACCCACTAGGAGATGGTGTAGGATGCTGTGATG------------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGG--GTATATTGTTGGCTGCCCTGACCATCAGAGTCCTCTTTTCGAGAGA--------CCTGGCAGCCTCGT--------GGGGTTGTGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCACGGTACCTATGTAAGGCTCAGTATTC-TTGTCATTGA-CACTTTGACCTTGAATATGAATTCCT-GGGATCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAGTCTGTTTGCTCCTA-TTTTGATAGACACGAGCTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119287 447 + 4244037 CCTGC----CCCTTCCTGTGAAATAAACCATGATGGTGCCAGGCTATGAGTCTTACCCACTAGGAGATGGTGTAGGATGCTGTGATG------------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGG--GTATATTGTTGGCTGCCCTGACCATCAGAGTCCTCTTTTCGAGAGA--------cctggcagcctcgt--------ggggttgtgaagatcccc--------tgtgtatggaagtgctttataaatggtgcagcacggtacctatgtaaggctcagtattc-ttGTCATTGA-CACTTTGACTTTGAATACAAATTCCT-GGGCTCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAGTCTGTTTGCTCCTATTTTTGATAGACATGAACTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2141647 447 + 4569836 CCTGC----CCCTTCCTGTGAAATAAACCATAATGGCGCTGGGCTATGAATCATACCCACTAGGAGATGGTGTAGGATACTGTGATG------------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGG--ATATATTGTTGACTGCCCCGACCATCAGAGTCCTCTTTTTGAGAGA--------CCTGGCAGCCTTGT--------GAGGTTGTGAAGATCCCC--------TGTGTATGGAAGTACCTTATAAATGGTGCAGCACGGTACCTATGTAAGGCTCAGTATTC-TTGTCATTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGAGTCTAAGTTTGACATTGTCTAGTCCCAGTAAAACATTCTACTCAGTCTCCTACAAAGTCTGTTTGCTCCTATTTTTGATAGACACGAAGTGAGCTCCTA-TTGTCTCAGTTTggagagcttgcctgagag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114103 429 - 159171411 CCTGC----CCCTCCCTGTGAAATAAACCATGATGGCTCTGGGCTGTGAGTCTTACTCACTGGGATATGGTGTGGGATGCTGTGATG-AGA--------CAAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTGGTTTTGC------------------CCTGACCTTCAGACTCCTCTTTTTGAGAGA--------CTGCCAAGCCTTGT--------GGGGTTGGGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATAGTACCTGTGTAAAGCCCAGTATTC-TTGTCATTGA-CACTCTGACCTTGAATACAAATTCCT-GGGCTCCTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTTCTCAGCCTCCTACAAAGCCCATTTGCTCCTATTTTTGATGGATGTGAACTAAGCTGCTA-TTTTCTCAGTTTggagagcttgcct----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1824750 424 + 3513951 CCGGC----CCCTCCCTGTGAAATAAACCATGATGGTGCTGGGCTGTGAGTCTTACTCACTGGGACATGGTGTGGGATGTTGTGATG-AGA--------AGAAGAATTATGGCTTATTTTG-AAGGCAGCA-TTTTTGGGTCCTGGTTTTGC------------------CCTGACCTTCAGACTCCTTTTTTTGAGAGA--------CTGCCCAGCCTTGT--------GGGGTTGGGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATAGTAC----GTAAAGCTCAATATTC-TTGTCATTGA-CACTTTGACCTTGAATACGAATTCCT-GGGTTCTTGGGGTCTAAGTTTGATATTGTCTAGTGCCAGTGAAACATTCTACTCAGCCTCCTACAAAGCCCATTTGCTCCTATTTTTGACGGATGTGAACT-GGCTGCTA-TTTTCTCAGTTTGGAGAGCTTGCCT----- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873232 428 + 1920343 CCCGC----CCCTCCCTGTGAAATAAACCATGATGGCGCTGGGCTGTGAGTCTTACTTACTGGGAGATGGTGTGGGATGCTGTGATG-AGA--------AGAAGAATTATGGCTTGTTTTG-GAGGCAGCA-TTTTTGGGTCCTTGTTTTGC------------------CCTGACCTTCAGACTCCTCTTTTTGAGAGA--------CTGCCCAGCCTTGT--------GGGGTCAGGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATAGTACCTACGTAAAGCTCAGTATTT-TTGTCATTGA-CACTTTGACCTTGAATACAAATTCCT-GGGGTCTTGGGGTCTGAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGCCTCCTACATAGCCCATTTGCTCCTATTTTTGACGGATGTGAACT-GGCTGCTA-TTTTCTCAGTTTGGAGAGCTTGCCT----- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6989951 429 - 7032639 CCTGC----CCCTCCGTGTGAAATAAACCATGATGGCGCTGGGCTGTGAGTCTTACCCACTGGGAGATGGTGTGGGATGCTGTGATG-AGA--------AGAATGATTATGGCTTGTTTTG-GAGGCAGGA-TTTTCGGGTCCTGGTTTTGC------------------CCTGACCTTCAGACTACTCTTTTTGAGAGA--------CTGCCCAGCCTTGT--------GGGGTTGGGAAGATCCCC--------TGTGTATGGAAGTGCTTTATAAATGGTGCAGCATAGTACCTATGTAAAGCTCAGTATTC-TTGTCATTGA-CACTTTGACCTTGAATACGAATTCCT-GGGCTCTTGGGGTCTAAGTTTGATATTGTCTAGTCCCAGTAAAACATTCTACTCAGCCTCCTACAAAGCCCATTTGCTCCTATTTTTGACGGATGTGAACTGAGCTGCTA-TTTTCTCAGTTTggagagcttgcct----- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22805271 432 + 28711273 CCTGC----C----CATGTGAAATGCACAATGATGGTGCTGGGCAGC-AGTCTTACCCATGAGGGCACAGGGTGGGGTGTAGCGATGTTGT--------GGAAGAATTATGGGGTG-TTTG-GAGGGAAAA-TTTCTGGGTCCTGGCTTTGG--ATAAGGCATTAACCTCCCTAACTCTGAGACTTTTCACTGAGAGAGA--------CCTGCTGCCCCCCCACATCCCGGGGGCTGTGATAATCCCC--------TGCATGTGGAAGCATCTTGCAGGGAGTGAAGCTCTTTGCACACGTAAGTCTTAGTATTC-TTGTCATTGA-TGCTTTAGCCTTGAATACTAATTCCT-GGTGTCTCTGGGTCTAATTTTGAGATTGTC-AACTCCAATAAAACATGTTACTCAGCCTCCTA--------------------CTTTGATTAGTGTGACCCAGGTACCTG-CTTTCTGAGTTTGGAGATCTTGCCTGAGAG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21422670 422 + 61074082 CCCACTCTGCCCTCTGTGTGAAGTCAGCAGTGATGGGGCTGGGCAATGGGTCTCACCTGCT-GATGACAGTGTGACCCACTG-GATG-ACAGTTACAATAGAAGAATTATGGATTGTTTTG-GAGGCAAAA-TCTTTGAGTTCTTATTTTGA--ACAAGTTGTCAGCTTCTCCAGCTTCCAGA-------------------------C----------TGT--------GTGATGGT-------CTC--------TGTGTATGGAAGTACTTTGTAAATGCCACAGCTCA-----CACATAAGCCTTACTATTTATTGCTATTGATCCCTTTGACCTTGAATATTGATTCCT-GAGCTCTCAGAGTCTAATTTTGAGGTGATTTGTTCTCAGTGGAGCATCCCACTCAGCCTCCTA--CAGTCCTTTTGTTCCTGCCTTTGACAGATGTAACCTGGGCTCCTGTTTTTCCCAGCTTGGAGAGCTCCACCAAAAG i canFam3.chr9 C 0 I 395 s dasNov3.JH570468 402885 423 - 852752 TCTGC----TCCTGCATATGAACTAGACCATGATGGAGCTGGGC-ATATATTGTACCTACTGGGTGACAGTGTGAA-------GCCT-ACT--------GGTAGAATTGTGGGTTATTTGGAAAGGCAAAATTTTTTGGGTCCTGAATTTGG--ATAGATTGTTAACCTCC--------------------TTTGAGAGAGCacttggtctgccaatctcatgca-----ggtgtcatgatgatcacctgggaaaatgtgcaagggggcactttgtaaatgacacagtactG---------AAGGCTTAGTG----TTGCCATTGA---------CTTGGAGTACTTATTCTTGGGGCTTTCAGGCTCTACTTTTGAGATTGTCTATTTCCAATAAATC-TTCTACTCAGCCTCCTCCAAGGTGCCTTTGCTCTTGCCTTCAACAGGTGTGACCTGGACTCCTC-TTTTCCCCATTTGGGGAGCTTGCCTGAAAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I a score=15300.000000 s hg38.chr17_GL383564v2_alt 96844 1 + 133151 g s panTro5.chr17 16286006 1 + 83181570 g i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190869 1 + 83442489 g i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025894 1 + 4267968 g i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008226 1 - 2193130 g i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079783 1 - 77216781 g i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992044 1 - 80997621 g i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049752 1 + 10377808 g i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934697 1 - 8458610 g i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890210 1 + 75148670 g i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119734 1 + 4244037 g i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142094 1 + 4569836 g i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114532 1 - 159171411 g i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1825174 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873660 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6990380 1 - 7032639 g i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22805703 1 + 28711273 G i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 403308 1 - 852752 G i dasNov3.JH570468 C 0 I 5559 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e canFam3.chr9 21423092 395 + 61074082 I a score=24024.000000 s hg38.chr17_GL383564v2_alt 96845 2 + 133151 tg s panTro5.chr17 16286007 2 + 83181570 tg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190870 2 + 83442489 tg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025895 2 + 4267968 tg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008227 2 - 2193130 tg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079784 2 - 77216781 tg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992045 2 - 80997621 tg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049753 2 + 10377808 tg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934698 2 - 8458610 tg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890211 2 + 75148670 tg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119735 2 + 4244037 tg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142095 2 + 4569836 cg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114533 2 - 159171411 tg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1825175 2 + 3513951 TG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873661 2 + 1920343 TG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6990381 2 - 7032639 tg i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22805704 2 + 28711273 TG i otoGar3.GL873537 C 0 I 3951 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e canFam3.chr9 21423092 395 + 61074082 I a score=2006923.000000 s hg38.chr17_GL383564v2_alt 96847 212 + 133151 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagagctttccagagagagggacagaaagtcaaggaagggagggagtaaggcagttgcctttgaagaagggagcaaggccagggcatcgggagtgatgagtaggggaggaacaatcagcctgtatgtgtgggcagtggccagggtacatgggggctcgccagttc s panTro5.chr17 16286009 212 + 83181570 acatttgcattgagacctcaagacagagaagaaacagagcagagggaaagagctttccagagagagggacagaaagtcaaggaagggagggagtaaggcagatgcctttgaagaagggagcaaggccagggcatcgggagtgatgagtaggggaggaacaatcagcctgtatgtgtgggcagtggccagggtacatgggggctcgccagttc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16190872 212 + 83442489 acatttgcattgagacctcaaaacagagaagaaacagagcagagggaaagagctttccagagagagggacagaaagtcaaggaagggagggagtaaggcagatgcctttgaagaagggagcaaggccagggcatcgggagtgatgaataggggaggaacaatcagcctgtatgtgtgggcagtggccagggtacatgggggctcgccagttc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4025897 212 + 4267968 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagaactttccagagagagggacagaaagtcaaggaagggagggagtaaggcagatgcctttgaagaagggagcaaggccagggcatcgggagtgatgagtaggggaggaacaatcagcctgtatgtgtgggcagtggccagGGTATATGGGGGCTCGCCAGTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008229 206 - 2193130 acatttgcattgagacctgaaaacagagaagaaac--agcagagggaaagagctttccagagagagggacagcaagtcaagga----agggagtgaggcagatgcctttgaaggagggagtaaggccagggcatctggagtgatgagtaagggaggagcaatcagcctgtatgtgtgggcagtggccagggtacatgggggctcaccagttc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079786 208 - 77216781 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagagctttccagagagggggacagcaagtcaagga----aaggagtgaggcggatgcctctgaaggagggagcaaggccagggcatctagagtgatgagtaggggaggagcaatcggcctgtaagtattggcagtggccagggtacatgggggctcgccagctc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992047 208 - 80997621 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagagctttccagagagggggacagcaagtcaagga----aaggagtgaggcggatgcctctgaaggagggagcaaggccagggcatctagagtgatgagtaggggaggagcaatcggCCTGTAAGTATTGGCAGTGGCCAGGGTACATGGGGGCTCGCCAGCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049755 208 + 10377808 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagagctttccagagagggggacagcaagtcaagga----aaggagtgaggcggatgcctctgaaggagggagcaaggccagggcatctagagtgaggagtaggggaggagcaatcggCCTGTAAGTATTGGCAGTGGCCAGGGTACATGGGGGCTCGCCAGCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934700 208 - 8458610 acatttgcattgagacctgaaaacagagaggaaacagagcagagggaaagagctttccagagagggggacagcaagtcaagga----aaggagtgaggcggatgcctctaaaggagggagcaaggcccgggcatctagagtgatgagtaggggaggagcaatcggcctgtacgtgtgggcagtggccagggtacatgggggctcgccagctc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890213 208 + 75148670 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagagctttctagagagggggacagcaagtcaagga----aaggagtgaggcggatgcctctgaaggagggaacaaggccagggcatctagagtgatgagtaggggagaAGCAATCGGCCTGTACGTGTGGGCAGTGGCCAGGGTACATGGGGGCTCGCCAGCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119737 208 + 4244037 acatttgcattgagacctgaaaacagagaagaaacagagcagagggaaagagctttccagagagggggacagcaagtcaagga----aaggagtgaggcggatgcctctgaaggagggagcaaggccagggcatctagagtgatgagtaggggaggagcaatcggcctgtacgtgtgggcagtggccagggtacatgggggctcgccagctc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142097 208 + 4569836 acatttgcattgagacctgaaaacagagaaaaaacagagcagagggaaagagctttccagagtgggggacagcaagtcaagga----agggagtgaggcggatgcatctgaagaagggaacaaggccagggcatctagagtgatgagtaggggaggagcaatcagtctgtacgtgtgggcagtggccagggtacatgggggctcgccagctc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114535 207 - 159171411 acatttgtattgagacctgaaaacagagaagaaacacagcagagggaaagagctttccagaaagagggatggcaagtcaagga----agggagtgaggtggctgcctttgaaggag-gagcaaggccagggcctctagagtggtaagtaggggagaAGCCATCAGCCTGTGTGTGTAGGCGACTGCCAGGGTACATGGGGGCTCACCAGCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1825177 202 + 3513951 ACATTTGTATTGAGACCTGAAAACAGAGAAGAAACACAGCAGAGGGAAAGAGCATTCCAGAGACAGGGATGGCAAGTCAAGGA----GGGGAGTGAGGTGGATGCCTTTGAAGGAG------AGAGCAAGGCCTCTGGAGTGATAAGTAGGGGAGAAGCCATCAGCCTGTATGTGTCGGTAACCACCAAGGTACATCGGGGCTCACCAGCTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873663 207 + 1920343 ACATTTGTATTGAGACCTGAAAACAGAGAAGAAACACAGCAGAGGGAAAGAGCTTTCCAGAGAGAGGGATGGCAAGTCAAGGA----AGGGAGTGAGGTGGATGCCTTTGAAGGAGGGAGCAAGGCCAGGGCCTCTGGAGTGTTAAGTA-GGGAGAAGCCATCAGCCTGTATGTGTAGGGAACCGCCAGGGTACACGGGGGCTCACCAGCTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6990383 208 - 7032639 acatttgtattgagacctgaaaacagagaagaaacacagcagaagggaagagctttccagagagagggatggcaagtcaagga----agggagtgaggtggatgcctttgaaggagggagcaaggccagggcctctggagtggtaagtaggggagaAGCCATCAACCTGTACGTGCAGGCAACTGCCAGGGTACATGGGGGCTCACCAGCTC i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e canFam3.chr9 21423092 395 + 61074082 I e otoGar3.GL873537 22805706 3951 + 28711273 I a score=939403.000000 s hg38.chr17_GL383564v2_alt 97059 85 + 133151 tgtggaggatccgatttcatttcaagggaagaggaaagccttgggagagttaaaaggatgaatttgattgacacttttattaaaa s panTro5.chr17 16286221 85 + 83181570 tgtggaggatccgatttcatttcaagggaagaggaaagccttgggagagttaaaaggatgaatttgattgacacttttattaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191084 85 + 83442489 tgtggaggatccgatttcatttcaagggaagaggaaagccttgggagagttaaaaggatgaatttgattgacacttttattaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026109 85 + 4267968 TGTGGAGGATCCAATTTCATTTCAAGGGAAGAGGAAAGCCTTGGGAGAGTTAAAAGGATGAATTTGATGGACACTTTTATTAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008435 85 - 2193130 tgtggaggatccgatttcatttcaagggaagaggaaagccttgggagagttaaaaggatgaatttgattgacacttttattaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30079994 85 - 77216781 tgcggggaatccgatttcatttcaaggcaagaggaaagccttgggagagttaaaagggttaatttgattgacacttttgttaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992255 85 - 80997621 TGCGGGGGATCCGATTTCATTTCAAGGCAAGAGGAAAGCCTTGGGAGAGTTAAAAGGGTTAATTTGATTGACACTTTTGTTAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2049963 85 + 10377808 TGCGGGGGATCCGATTTCATTTCAAGGGAAGAGGAAAGCCTTGGGAGAGTTAAAAGGGTTAATTTGATTGACACTTTTGTTAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934908 85 - 8458610 tgcgggggatccgatttcatttcaagggaagaggaaagccttgggagagttaaaaggattaatttgattgacacttttgttaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890421 85 + 75148670 TGCGGGGGATCCGATTTCATTTCAAGGGAAGAGGAAAGACTTGGGAGAGTTAAAAGGATTAATTTGATTGACACTTTTGTTAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2119945 85 + 4244037 tgcgggggatccgatttcatttcaagggaagaggaaagccttgggagagttaaaaggattaatttgattgacactttttttaaaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142305 85 + 4569836 tgcgggggatccaatttcatttcaagggaagaggaaagccttgggagagttaaaaggattaatttgattgacacttttattaaaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114742 85 - 159171411 TGCGGAGGATCTGATTTCATTTCAATGGAAGAAGAAAGCCTTGGGAGAGTTAAAAGGATGAATCTGATTGATACCTTTATTAAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1825379 85 + 3513951 TGCAGAGGATCTGATTTCATTTCAAGGGAAGAAGAAAGCCTTGGGAGAGTTAAAAGGATGAATTTGATTGACACCTTTATTAAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873870 85 + 1920343 TGCGGAGGATCTGATTTCATTTCAAGGGAAGAAGAAAGCCTTGGGAGAGTTAAAAGGATGAATGTGATTGACACCTTTATTAAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6990591 85 - 7032639 TGCGGAGGATCTGATTTCATTTCAAGGGAAGAAGAAAGCCTTGGGAGAGTTAAAAGGATGAGTTTGATTGGCACCTTTATTAAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22809657 85 + 28711273 tgtgtctggtcTGATTTTATTTTGAGTAAAGAGAGAAGCATTAAGAGAGTTAAAAGGATGGTTTTGATTGACACCTTTATGAACA i otoGar3.GL873537 I 3951 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e canFam3.chr9 21423092 395 + 61074082 I a score=1674744.000000 s hg38.chr17_GL383564v2_alt 97144 155 + 133151 ggagtgcattggcagctgaatggaaaataggttTACTGAACACTAACATTTAAAGTTTCAGGGTAGTGGATGACAATTACAAGTCAGGTATGTC------TTCTtttatgtttcaaagaagaatcactgacatctaacaacaactgctcacatttctcatc s panTro5.chr17 16286306 155 + 83181570 ggagtgcattggcagctgaatggaaaataggttTGCTGAACACTAACATTTAAAGTTTCGGGGTAGTGGATGACAATTACAAGTCAGGTATGTC------TTCTtttatgtttcaaagaagaatcactgacatctaacaacaactgctcacatttctcatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191169 155 + 83442489 ggagtgcattggcagctgaatggaaaataggttTGCTGAACACTAACATTTAAAGTTTCGGGGTAGTGGATGACAATTACAAGTCAGGTATGTC------TTCTtttatgtttcaaagaagaatcactgacatctaacaacaactgctcacatttctcatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026194 155 + 4267968 GGAGTGCATTGGCAGCTGAATGGAAAATAGGTTTACTGAACACTAACATTTAAAATTTCGGGGTAGTGGATGACAATTACAAGTCAGGTATGTC------TTCTTTCAtgtttcaaagaagaatcactgacatctaacaacaactgctcacatttctcatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008520 152 - 2193130 ggagtgcgttggcagctgaatggaaaataggttTACTGAACACTAACATTTAATGTTTCAGGGTAGTGGATGACAGTTACAAGTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcactgacatct---aacaactgctcacatttctcatc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080079 152 - 77216781 ggagcgtgttggcagctgaatggaaaataggttTACTGAACACTAATGTTTAAAGTTTCGTGATAGTGGATGACAGTTACAATTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcaccgacatct---aacgactgctcacctttctcatc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992340 152 - 80997621 GGAGCGTGTTGGCAGCTGAATGGAAAATAGGTTTACTGAACACTAATGTTTAAAGTTTCGTGATAGTGGATGACAGTTACAATTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcaccgacatct---aacgactgctcacctttctcatc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050048 152 + 10377808 GGAGCGTGTTGGCAGCTGAATGGAAAATAGGTTTACTGAACACTAATGTTTAAAGTTTCGTGATAGTGGATGACAGTTACAATTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcaccgacatct---aacgactgctcacctttctcatc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1934993 152 - 8458610 ggagcgtgttggcagctgaatggaaaataggttTACTGAACACTAACGTTTAAAGTTTCGTGATAGTGGATGACAGTTACAATTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcactgacatct---aacgactgctcacctttctcatc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890506 152 + 75148670 GGAGCGTGTTGGCAGTTGAATGGAAAATAGGTTTACTGAACACTAACGTTTAAAGTTTCGTGATAGTGGATGACAGTTACAATTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcactgacatct---aacgactgctcacctttctcatc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120030 152 + 4244037 ggagcgtgttggcagctgaatggaagataggctTACTGAACACTAACGTTTAAAGTTTCGTGATAGTGGATGACAGTTACAATTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcactgacatct---aatgactgctcacctttctcatc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142390 152 + 4569836 ggagcgtgttggcagctgaatggaaaataggttTACTGAACACTAACGTTTAAAGTTTCGGGGTAGTGGATGACAGTTACAAGTCAGGTATGTC------TTTTtttatgtttcaaagaagaatcactgacatct---aatgactgctcacctttctcatc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114827 153 - 159171411 GGAGTGTGTTGACAGCTGAATGGAAAATAGGTTTGCTGAACACTAACATTTAAAGTTTCAGGGTAGTGGATGACAGTTATAAGTCAGATATGTCC-----TTTTTTTGTGTTTCAAAGAAGAATAACTGACATCT---AACAACTGCTCACATTTCTCATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1825464 153 + 3513951 GGAGTGCATTGGCGGCTGAATGGAAAATAGGTTTGCTGAACACTAACATTTAAAGTTTCAGGGTAGTGGATGACAGTTATAAGTCAGATATGTCC-----CTTTtttgtgtttgaaaaaagaatagctggcatct---aacaagtgctcacatttctcatc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1873955 154 + 1920343 GGAGTGCGTTGGCAGCTGAATGGAAAATAGGTTTGCTGAACACTAACATTTAAAGTTTCAGGGTAGTGGATGACAGTTATAAGTCAGATATGTCCT----TTTTtttgtgtttcaaagaagaataactgacatct---aacaactgctcacatttctcatc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6990676 151 - 7032639 GGAGTGCGTCGGCAGCTGAATGGAAAATAGATTTGCTGAACACTAACATTTAAAGTTTCAGGGTAGTGGATGACAGTTAT--GTCAGATATGTCC-----TTTTtttgtgtttcaaagaagaataactgacatct---aacaactgctcacatttctcatc i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22809742 153 + 28711273 GGAGCACTTTGGCAGCCAAGTGGGAAATAGGTTTAGCAAACAATAGCATTTAGAACTTCCGGGTAGTGGAAGACAGTTGCAAGTTGGATGCATTG-----TGTTGttttgtttcaaagaagagtcactgacatct---aacaactgctcatattccccatc i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21423487 142 + 61074082 GGAGCACTTCAGTGGCTGAGTGCAGAA----------------TAATACTTAAAGCTGGGGGAGTATGGGGGACAGTTAC-AGTCAAATGCTTTGTTCTGTTTTGTTTTGCTTTAGAGAAGAGTCACTG-CGTCACG-Cacaactgctcacattcctcatc i canFam3.chr9 I 395 I 208 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I a score=197023.000000 s hg38.chr17_GL383564v2_alt 97299 16 + 133151 aaaaacaggagagtct s panTro5.chr17 16286461 16 + 83181570 aaaaacaggagagtct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191324 16 + 83442489 aaaaacaggagagtct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026349 16 + 4267968 aaaaacaggagagtct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008672 16 - 2193130 aaaaacaggagagtct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080231 16 - 77216781 aaaaacaggggagtct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992492 16 - 80997621 aaaaacaggggagtct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050200 16 + 10377808 aaaaacaggggagtct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935145 16 - 8458610 aaaaacaggggagtct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890658 16 + 75148670 aaaaacaggggagtct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120182 16 + 4244037 aaaaacaggggagtct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142542 16 + 4569836 aaaaacaggggagtct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46114980 16 - 159171411 AAACACAGGAGAGTCT i calJac3.chr5 C 0 I 582 s saiBol1.JH378271 1825617 16 + 3513951 aaacacaggagagtct i saiBol1.JH378271 C 0 I 600 s cebCap1.NW_016107730v1 1874109 16 + 1920343 aaacacaggagagtcT i cebCap1.NW_016107730v1 C 0 I 588 s aotNan1.NW_018502359v1 6990827 16 - 7032639 aaacacaggagagtct i aotNan1.NW_018502359v1 C 0 I 584 s otoGar3.GL873537 22809895 16 + 28711273 aaaaacaggagagtca i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21423837 16 + 61074082 agaaacaggaaaatca i canFam3.chr9 I 208 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I a score=1536664.000000 s hg38.chr17_GL383564v2_alt 97315 236 + 133151 ggcagcaggcaccaaaagtcccaagaatggctccaactataaaaggatatgaggatgacatgatctgtcccttgttattgcaaaatgcacactgacaacttgatgaagttatgtgccaggcaggtgggccccggccccaccaggctcctcgctgagcctgctgcaggtgtgcagaggtagctttccctcactctcac---tttttttttt----taaacttgtagggacaagcacaggactga s panTro5.chr17 16286477 235 + 83181570 ggcagcaggcaccaaaagtcccaagaatggctccaactataaaaggatatgaggatgacatgatctgtcccttgttattgcaaaatgcacactgacaacttgatgaagttatgtgccaggcaggtgggccccggccccaccaggctcctcgctgagcctgctgcaggtgtgcagaggtagcgttccctcactctcac---tttttttttt-----aaacttgtagggacaagcacaggactga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191340 234 + 83442489 ggcagcaggcaccaaaagtcccaagagtggctccaactataaaaggatatgaggatgacatgatctgtcccttgttattgcaaaatgcacactgacaacttgatgaagttatgtgccaggcaggtgggccccggccccaccaggctcctcgctgagcctgctgcaggtgtgcagaggtagcgttccctcactctcac---ttttttttt------aaacttgtagggacaagcacaggactga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026365 235 + 4267968 ggcagcaggcaccaaaagtcccaagaatggctccaactataaaaggatatgaggatgacatgatctgtcccttgttattgcaaaatgcacactgacaacttgatgaagttatgtgccaggcaggtgggccccggccccaccaggctcctcgctgagcctgctgcaggtgtgcagaggtagcgttccctcactctcac---tttttttttt-----aaacttgtagggacaagcacaggactga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008688 237 - 2193130 ggcagcaggcaccaaaagtcccaagaatggctccaactataaaaggatatgaggatgacatggcttgtcccttatgattgcaaaatgcacactgacaacttgatgaagtcacacgccaggcaggtgggccccagccccgccaagctcctcgctgagcctgctgcaggtgtgcagaggtagcgttctctcactctcac---tctttttttt---ttaaacatgtagggacaagcacaggactga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080247 242 - 77216781 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacacggcctgtccctcgttattgcaaaatgcacaccaacaacttgatgaagttacgcgccaggcaggtgggccccggccccgccgggctcctggctgagcctgctgcagctgtgcagaggtagcgttccctcaccctcac-tttttttttttttttttaaacatgtagggacaagcacaggactga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992508 240 - 80997621 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacacggcctgtcccttgttattgcaaaatgcacaccaacaacttgatgaagttacgcgccaggcaggtgggccccggccccgccgggctcctggctgagcctgctgcagctgtgcagaggtagcgttccctcaccctcac---tttttttttttttttaaacatgtagggacaagcaccggactga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050216 240 + 10377808 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacacggcctgtcccttgttattgcaaaatgcacaccaacaacttgatgaagttacgcgccaggcaggtgggccccggccccgccgggctcctggctgagcctgctgcaggtgtgcagaggtagcgtttcctcaccctcac---tttttttttttttttaaacatgtagggacaagcacaggactga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935161 240 - 8458610 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacacggcctgtcccttgttattgcaaaacgcacaccaacaacttgatgaagttacgcgccaggcaggtgggccccggccccgccgggctcctggctgagcctgctgcaggtgtgcagaggtagcgttccctcaccctcac---tttttttttttttttaaacatgtagggacaagcacaggactga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890674 240 + 75148670 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacacggcctgtcccttgttattgcaaaatgcacaccaacaacttgatgaagttacgtgccaggcaggtgggccccggccccaccgggctcctggctgagcctgcagcaggtgtgcagaggtagcgttccctcaccctcac---tttttttttttttttaaacatgtagggacaagcacaggactga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120198 240 + 4244037 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacacggcctgtcccttgttattgcaaaatgcacaccaacaacttgatgaagttacgcgccaggcaggtgggccccggccccgccgggctcctggctgagcctgctgcaggtatgcagaggtagcgttccctcaccctcac---tttttttttttttttaaacatgtagggacaagcacaggactga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142558 243 + 4569836 ggaagcaggcaccaaaagtcacaagaatggctccaactctaaaaggatatgaggatgacatggcctgtcccttgttattgcaaaatgcacaccaacaacttgatgaagttacgcgccaggcaggtgggccccggccccgccgggctcctggttgagcctgctgcaggtgtgcagaggtagcgttccctcaccctcactttttttttttttttttttaacatgtagggacaagcacaggactga i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22809911 207 + 28711273 gataagaagtggcccacatcacaaggatcactcaaactataaaaagatatgatcatgacatggcctgCCTGTTGTGATCATGAAACTCAGCCTGGCATC-TGAGGAGGGCATGTGCC-------------------------GGCTCCCGTGGGAGAC-----CAGGTGTGTGGAGGCAGTGTTCTTTCTCTCTCTC---ACTTTCACTT--GCTTGACGTGTGGGGACAAGCTCTGGGCTGA i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21423853 230 + 61074082 gacaagaagtgccaaaagtttcaagaactgctaaaactgtaagaagatatgatcatgatgtggcctgtcccttgttattgcaaaacttgtgctgacacctttacatggacaggtgccaagcaggttggccctggcctggccaggctcttatctgagcccatggcaagtatgca-aggtagtgtt--ctcattctttc---tcatttttcc-------acatacagggacaagcacaggtcaga i canFam3.chr9 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e aotNan1.NW_018502359v1 6990843 584 - 7032639 I e cebCap1.NW_016107730v1 1874125 588 + 1920343 I e saiBol1.JH378271 1825633 600 + 3513951 I e calJac3.chr5 46114996 582 - 159171411 I a score=21294.000000 s hg38.chr17_GL383564v2_alt 97551 3 + 133151 aat s panTro5.chr17 16286712 3 + 83181570 aat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191574 3 + 83442489 aat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026600 3 + 4267968 aat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008925 3 - 2193130 aat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080489 3 - 77216781 aat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992748 3 - 80997621 aat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050456 3 + 10377808 aat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935401 3 - 8458610 aat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890914 3 + 75148670 aat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120438 3 + 4244037 aat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142801 3 + 4569836 aat i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21424083 3 + 61074082 aat i canFam3.chr9 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e otoGar3.GL873537 22810118 1 + 28711273 I e aotNan1.NW_018502359v1 6990843 584 - 7032639 I e cebCap1.NW_016107730v1 1874125 588 + 1920343 I e saiBol1.JH378271 1825633 600 + 3513951 I e calJac3.chr5 46114996 582 - 159171411 I a score=6780.000000 s hg38.chr17_GL383564v2_alt 97554 6 + 133151 gtaaag s panTro5.chr17 16286715 6 + 83181570 gtaaag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191577 6 + 83442489 gtaaag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026603 6 + 4267968 gtaaag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008928 6 - 2193130 gtaaag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s canFam3.chr9 21424086 6 + 61074082 ttaagg i canFam3.chr9 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e otoGar3.GL873537 22810118 1 + 28711273 I e aotNan1.NW_018502359v1 6990843 584 - 7032639 I e cebCap1.NW_016107730v1 1874125 588 + 1920343 I e saiBol1.JH378271 1825633 600 + 3513951 I e calJac3.chr5 46114996 582 - 159171411 I e macNem1.NW_012014910v1 2050459 0 + 10377808 C e colAng1.NW_012122154v1 2142804 0 + 4569836 C e manLeu1.NW_012106252v1 2120441 0 + 4244037 C e chlSab2.chr16 64890917 0 + 75148670 C e cerAty1.NW_012006043v1 1935404 0 - 8458610 C e rheMac8.chr16 30080492 0 - 77216781 C e macFas5.chr16 27992751 0 - 80997621 C a score=734179.000000 s hg38.chr17_GL383564v2_alt 97560 866 + 133151 tgtagggggagcccttgaaactattgctatggaataaaagatgaaatgctcctgattattgtaaatacaaagttgcatgcaggattgtgtaaagacaatgccaggctggactaccagaataagccaacagcgtgtgatgtgcttccccctgcagag--tctatgaacggaagggcaggcagggatgtttcacatcaccaagattcctatcccagaaaagcagatgttcatagctctgagaacggaatgcgacccttgaggagagcctataaacggacgcatgaggggtgcatgttcatatggataagatagggctataaatgccctcatcttgccacagctcttctaggcctctttagggttaaggcattctcccttctgagaatttctggtctaacctgttgtctagcttcacgtcctgtttctatggattgtttgtaaccagcttttgctgcaactgttactgctgattaatatcttgctaatcacaggttatggaaacactgtgtttctgttttaaggctctgttagaaattactgatgcacatactatattgtaaattcttatctctgtatattgtacttctgcatacagatgttatgttaaagaattgcttcatccccatgtgacca------tctcacctcataatcaaatgacccgaaatccctcac-taacctacccccaccctcactaaacttaataacaaatgctatatttatatccagtgc-attggtggcatcgcaggaccagaaggcggtgaccccccggacccagctttcactatcttgtgtgtgtctattctttctcaacctgccaatcctcctgggaacaaagag-----ccccattgcattgcagattgctggccagatcctgc s panTro5.chr17 16286721 863 + 83181570 tgtagggagagcccttgaaactattgctatggaataaaagatgaaatgctcctgattattgtaaatacaaagttgcatgcgggattgtgtaaagacaatgccaggctggactaccagaataagccaacagcacgtgatgtgcttccccctgcagagagtctatgaacggaagtgcaggcagggatgtttcacatcaccaagattcctatcccagaaaagcagatgttcataactctgagaacggaatgcgacccttctggagagcctataaacggacgcatgaggggtgcatgttcatatggataagatagggctataaatgccctcatcttgccacagctcttctaggcctctttagggttaaggcatactcccttctgagaatttctggtctaacctgttgtctagcttcacatcctgtttttatggattgtttgtaaccagcttttgctgcaactcttactgctgattaatatcttggtaatcataggttatggaaagactgtgtttctgttttaaggctctgttagaaattactgatgcacatactatattgtaaattcttatctctgtatattgtacttctccatacagatgttatgttaaagaattgcttcatccccatgtgacca------tctcacctcataatcaaatgacccgaaatccctcac-taacctacccccac----actaaacttaataataaatgctatatttatatccagtgc-at-ggtggcatcacaggaccagaaggcggtgaccccccggacccagctttcactatcttgtgtgtgtctattctttctcaacctgccaatcctcctgggaacaaagag-----ccccgttgcattgcagattgctggccagatcctgc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16191583 863 + 83442489 tgtagggagagcccttgaaactattgctatggaataaaagatgaaatgctcctgattattgtaaatacaaagttgcatgcgggattgtgtaaagacaatgccaggctggactaccagaataagccaacagcacgtgatgtgcttccccctgcagagagtctatgaacggaagtgcaggcagggatgtttcacatcaccaagattcctatcccagaaaagcagatgttcataactctgagaacggaatgcgacccttctggagagcctataaatggacgcatgaggggtgcatgttcatatggataagatagggctataaatgccctcatcttgccacagctcttctaggcctctttagggttaaggcatactcccttctgagaatttctggtctaacctgttgtctagcttcacatcctgtttttatggattgtttgtaaccagcttttgctgcaactcttactgctgattaatatcttggtaatcataggttatggaaagactgtgtttctgttttaaggctctgttagaaattactgatgcacatactatattgtaaattcttatctctgtatattgtacttctgcatacagatgttatgttaaagaattgcttcatccccatgtgacca------tctcacctcataatcaaatgacccgaaatccctcac-taacctacccccac----actaaacttaataataaatgctatatttatatccagtgc-at-ggtggcatcacaggaccagaaggcggtgaccccccggacccagctttcactatcttgtgtgtgtctattctttctcaacctgccaatcctcctgggaacaaagag-----ccccgttgcattgcagattgctggccagatcctgc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4026609 868 + 4267968 tgtagggagagcccttgaaactattgctatggaataaaagatgaaatgctcctgattattgtaaatacaaagttgcatgcaggattgtgtaaagacaatgccaggctggactaccagaataagccaacagcgcgtgatgtccttccccctgcagagagtctatgaacggaagtgcaggcagggatgtttcacatcaccagtattcctatcccagaaaagcagatgtttatagctctgagaacggaatgcgacccttgtggagagcctataaatggacgcatgaggggtgcatgttcatatggataagatagggctataaatgccctcatcttgccacagctcttctaggcctctttagggttaaggcatactcccttctgagaatttctggtctaacctgttgtctagcttcacatcctgtttctatggattgtttgtaaccagcttttgctgcaactgttactgctgattaatatcttgctaatcataggatatggaaagactgtgtttctgttttaaggctctgttagaaattactgatgcacatactatattgtaaattcttatctctgtatattgtacttctgcatacagatgttatgttaaagaattgcttcatccccatgtgacca------tctcacctcatattcaaatgacctgaaatccctcac-taacctacccccaccctcactaaacttaataataaatgctatatttatatccagtgc-attggtggcatcgcaggaccagaaggcggtgaccccccggacccagctttcactatcttgtgtgtgtctattctttctcaacctgccaatcctcctgggaacaaagag-----ccccgttgcattgcagattgctggccagatcctgc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2008934 868 - 2193130 tgtagggagaccccttgaaactattgctatggaatgtaagatgaaatgctcctgattattgtaaatacaaagttgcatgcaggattgtgtaaagacaatgccaggttgtactgccagaataagccaacagcgcatgatatgattctccctgcagagagcctatgaatggaagtgcaggcagggaggtttcacatcaccaagatttctatcccagaaaagcagatgttcatagctctgggaatggaatgtgacccttgtggagagcctataaatgaacgcatgaggggcacttgttcatatggataacatagggctataaacgccctcatcttgccagggctcttctaggcctctttagggttaaggcatactcccttctgagaatttctggtctaacctgttgtctagcttcacgtcctgtttctatggattgtttgtaaccaacttttgctgcaactgttactgctgattaatatcttgataatcataagttatggaaagactgtgtttctgttttaatgctctgttagaaattactgatgcac-tactatattgtaaattcttatctctgtatattgtacttctgcatacagatgttatgtt-aagaattacttcatccccatgtgaagagaagtttctcatct--------aaagttccttaatacctcacataacctacccccgccttcactaaacttaatagtaaatggtg---gtatatccagtgcaattggtggcattgcaggaccagaaggtggtgaccccctggtcccagctttcactatcttgtgtgtgtctattctttcttgacctgctgatcctcctgggaacaaagaaatagcccctgttgcattgcaggctgctggccagatcccgt i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e canFam3.chr9 21424092 0 + 61074082 C e otoGar3.GL873537 22810118 1 + 28711273 I e aotNan1.NW_018502359v1 6990843 584 - 7032639 I e cebCap1.NW_016107730v1 1874125 588 + 1920343 I e saiBol1.JH378271 1825633 600 + 3513951 I e calJac3.chr5 46114996 582 - 159171411 I e macNem1.NW_012014910v1 2050459 0 + 10377808 C e colAng1.NW_012122154v1 2142804 0 + 4569836 C e manLeu1.NW_012106252v1 2120441 0 + 4244037 C e chlSab2.chr16 64890917 0 + 75148670 C e cerAty1.NW_012006043v1 1935404 0 - 8458610 C e rheMac8.chr16 30080492 0 - 77216781 C e macFas5.chr16 27992751 0 - 80997621 C a score=5504.000000 s hg38.chr17_GL383564v2_alt 98426 4 + 133151 aata s panTro5.chr17 16287584 4 + 83181570 aata i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192446 4 + 83442489 aata i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027477 4 + 4267968 aata i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009802 4 - 2193130 aata i nomLeu3.chrUn_GL397460_1 C 0 C 0 s calJac3.chr5 46115578 4 - 159171411 AATT i calJac3.chr5 I 582 C 0 s saiBol1.JH378271 1826233 4 + 3513951 aatt i saiBol1.JH378271 I 600 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e canFam3.chr9 21424092 0 + 61074082 C e otoGar3.GL873537 22810118 1 + 28711273 I e aotNan1.NW_018502359v1 6990843 584 - 7032639 I e cebCap1.NW_016107730v1 1874125 588 + 1920343 I e macNem1.NW_012014910v1 2050459 0 + 10377808 C e colAng1.NW_012122154v1 2142804 0 + 4569836 C e manLeu1.NW_012106252v1 2120441 0 + 4244037 C e chlSab2.chr16 64890917 0 + 75148670 C e cerAty1.NW_012006043v1 1935404 0 - 8458610 C e rheMac8.chr16 30080492 0 - 77216781 C e macFas5.chr16 27992751 0 - 80997621 C a score=33840.000000 s hg38.chr17_GL383564v2_alt 98430 3 + 133151 gta s panTro5.chr17 16287588 3 + 83181570 gta i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192450 3 + 83442489 gta i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027481 3 + 4267968 gta i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009806 3 - 2193130 gta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080492 3 - 77216781 gta i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992751 3 - 80997621 gta i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050459 3 + 10377808 gta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935404 3 - 8458610 gta i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890917 3 + 75148670 gta i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120441 3 + 4244037 gta i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142804 3 + 4569836 gta i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115582 3 - 159171411 GTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826237 3 + 3513951 gta i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874713 3 + 1920343 gta i cebCap1.NW_016107730v1 I 588 C 0 s aotNan1.NW_018502359v1 6991427 3 - 7032639 gta i aotNan1.NW_018502359v1 I 584 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e canFam3.chr9 21424092 0 + 61074082 C e otoGar3.GL873537 22810118 1 + 28711273 I a score=63226.000000 s hg38.chr17_GL383564v2_alt 98433 6 + 133151 aagcct s panTro5.chr17 16287591 6 + 83181570 aagcct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192453 6 + 83442489 aagcct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027484 6 + 4267968 aagcct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009809 6 - 2193130 aagcct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080495 6 - 77216781 aagcct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992754 6 - 80997621 aagcct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050462 6 + 10377808 aagcct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935407 6 - 8458610 aagcct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890920 6 + 75148670 aagcct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120444 6 + 4244037 aagcct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142807 6 + 4569836 aagcct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115585 6 - 159171411 AAGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826240 6 + 3513951 aagccc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874716 6 + 1920343 aggccc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991430 6 - 7032639 aagccc i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21424092 6 + 61074082 aagatc i canFam3.chr9 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I e otoGar3.GL873537 22810118 1 + 28711273 I a score=857476.000000 s hg38.chr17_GL383564v2_alt 98439 83 + 133151 agggaggatttacagcctccccagtcaaagatgtatttacaaa------aaattca-aacacttgctcagctgcggcctggatgtgatgg s panTro5.chr17 16287597 83 + 83181570 agggaggatttacagcctccccagtcaaagatgtatttacaaa------aaattca-aacatgtgctcagctgcggcctggatgtgatgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192459 83 + 83442489 agggaggatttacagcctccccagtcaaagatgtatttacaaa------aaattca-aacatgtgctcagctgcggcctggatgtgatgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027490 83 + 4267968 agggaggatttacagcctccccagtcaaagatgtatttacaaa------aaattca-aacacgtgctcagctgcggcctggatgtgatgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009815 83 - 2193130 agggaagatttacagcctccccagtcaaagacgtatttacaaa------aaattca-aatatgtgctcagctgcggcctggatgtgatgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080501 84 - 77216781 agggaagatgtacagcctccccagtcaaagacatatttacaaaa-----aaactca-aacacgtgctcagCTGCGGCCTGGATGTGATGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992760 84 - 80997621 agggaagatgtacagcctccccagtcaaagacatatttacaaaa-----aaactca-aacacgtgctcagCTGCGGCCTGGATGTGATGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050468 84 + 10377808 agggaagatgtacagcctccccagtcaaagacatatttacaaaa-----aaactca-aacacctgctcagCTGCGGCCTGGATGTGATGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935413 84 - 8458610 agggaagatgtacagcctccccagtcaaagacatatttacaaaa-----aaaatca-aacatgtgctcagctgtggcCTGGATGTGATGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64890926 84 + 75148670 agggaagatgtacagcctccccagtcaaagacatatttacaaaa-----aaattcg-aacgtgtgGTCAGCTGCGGCCTGGATGTGATGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120450 84 + 4244037 agggaagatgtacagcctccccagtcaaagacatatttacaaaa-----aaaatca-aacacgtgctcagCTGCGGCCTGGATGTGATGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142813 84 + 4569836 agggaagatgtacagcctccccagtcaaagacatatttacaaag-----aaatgca-aacacgtgctcagctgcgggctggatgtgacgg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115591 83 - 159171411 AGGGAAGATTTACAGCATCCCCAATCAAAGGCATATTTACAAG------AAATTCA-AACACATGCTCAGCTGTGGCCTGGACGTGACAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826246 83 + 3513951 agggaagatttacagcgtccccagtcaaagacatatttacaag------aaattca-aacacgtgctcagctgtggcCTGGACGTGACAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874722 83 + 1920343 agggaagatttacagcatccccagtcaaagacgtatttacaag------aaactca-aacacatgctcaactgcagcctggacgtgatag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991436 83 - 7032639 agggaagatttacagcgtccccagtcaaagacatatttacaag------aaattca-aacacgtgctcagctgcggcctggacgtgacaa i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810119 78 + 28711273 AGGAAAGATTTACAGCTTCCC----CCAAGACATACTGAACAA------GAAATTA-AGTATGAGCTTGGCAGTTGCCAGGAAACG-TCA i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21424098 88 + 61074082 agggaaaatgtatagcttctgc-gtcgaagacagatttataagatttatatgtttataaaacgtgctcagc-acggcagagaaatattgg i canFam3.chr9 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I e dasNov3.JH570468 403309 5559 - 852752 I a score=448759.000000 s hg38.chr17_GL383564v2_alt 98522 62 + 133151 catctacaca--------------agatgacttcctgcagcggc-acaaatgaagctgtgggggatcccgacgagct s panTro5.chr17 16287680 62 + 83181570 catctacaca--------------agatgacttcctgcagcggc-acaaatgaagctgtgggggatcccgacgagct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192542 62 + 83442489 catctacaca--------------agatgacttcctgcagcggc-acaaatgaagctgtgggggatcccgacgagct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027573 62 + 4267968 catctacaca--------------agatgacttcctgcagcggc-acaaatgaagctgtgggggatcccgacgagct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009898 61 - 2193130 catctacaca--------------agatgacttcctgcagcggc-acaaatgaagctgt-ggggatcccgacgagct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080585 46 - 77216781 TATCTACACA--------------AGGTGACTTCCTGCAGCGTC-AT----------------GACCCCCGCCAGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992844 46 - 80997621 TATCTACACA--------------AGGTGACTTCCTGCAGCGTC-AT----------------GACCCCCGCCAGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050552 46 + 10377808 TATCTACACA--------------AGGTGACTTCCTGCAGCGTC-AT----------------GACCCCCGCCAGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935497 46 - 8458610 TATCTACACA--------------AGATGACTTCCTGCAGCGTC-AT----------------GACCCCCGCGAGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891010 43 + 75148670 TATCTACACA--------------AGATGACTTCCTGCAGCGTC-AC----------------GACCCCCACGA--- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120534 46 + 4244037 TATCTACACA--------------AGATGACTTCCTGCAGCGTC-AT----------------GACCCCGGCAAGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142897 47 + 4569836 tatctacaca--------------agatgacttcctgcagcgtcaac----------------gacccccacaagct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115674 62 - 159171411 CATCTATACA--------------AAATGACTTCCTGTAGCGGC-ACAAGTGAAGCTGTGGGTGACCCCGACAAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826329 62 + 3513951 CATCTACACA--------------AGATGACTTCCTACAGTGGC-ACACATGAAACTGTGGGTGACCCCGAAGAGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874805 62 + 1920343 catctacaca--------------agatgacttcctgcagtggc-acaagtgaagctgtgggtgaccccgaagagct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991519 62 - 7032639 catctacaca--------------agatgacttcctgcagtggc-acaagtgaagctgtgggtgaccccgaagagcc i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810197 70 + 28711273 CATCTATACATCTAGATGAAGTCTATATGACTTCATGTGGCAGT-AC----AGAGCTATTGGTGACCCCAGTGAA-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424186 62 + 61074082 tgtctacagg--------------acatggcttcctgaggcagc-acaaatgaagttggtgatggccctaatgagct i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 408868 60 - 852752 cgtttcccCa--------------aaatgactttatatggcaac-ccaaatgaaggtgatggtggcacctgtgtt-- i dasNov3.JH570468 I 5559 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2993405 2082 + 8555354 I e micMur3.chr16 35905769 2067 - 65901067 I a score=374497.000000 s hg38.chr17_GL383564v2_alt 98584 29 + 133151 aaagctt-ggg-tgtggcacatgggagtgaa s panTro5.chr17 16287742 29 + 83181570 aaagctt-ggg-tgtggcacatgggagtgca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192604 29 + 83442489 aaagctt-ggg-tgtggcacatgggagtgca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027635 29 + 4267968 aaagctt-ggg-tgtggcacatgggagtgca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009959 29 - 2193130 aaagctt-ggg-tgtggcacatgggagcgta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080631 29 - 77216781 AAGGCTT-GGG-TGTGGCACATGGGAGTGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992890 29 - 80997621 AAGGCTT-GGG-TGTGGCACATGGGAGTGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050598 29 + 10377808 AAGGCTT-GGG-TGTGGCACATGGGAGTGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935543 29 - 8458610 AAGGCTT-GGG-TGTGGCACATGGGAGTGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891053 26 + 75148670 ---GCTT-GGG-TGTGGCACATGGGAGTGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120580 29 + 4244037 AAGGCTT-GGG-TGTGGCACATGGGAGTGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142944 29 + 4569836 aaggctt-ggg-tgtggcacatgtgagtgcg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115736 29 - 159171411 GAAGCCT-GGG-TGTGGCACAGGGGAGTGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826391 29 + 3513951 GAAGCCT-GGG-TGGGGCACATGGGAGTGTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874867 29 + 1920343 gaagcct-ggg-tgtggcacatgggagtgta i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991581 29 - 7032639 gaagtct-ggg-tgtggcacatgggagtgtg i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2995487 29 + 8555354 aaagctt-ggg-tgtggcacattggagtggg i proCoq1.NW_012135969v1 I 2082 I 2 s otoGar3.GL873537 22810267 29 + 28711273 AAAGCTT-GGG-TGTGCCACATCAGAGCATG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424248 30 + 61074082 aaagcttagaa-tgtgacacactGgtgtgtg i canFam3.chr9 C 0 I 22 s dasNov3.JH570468 408928 28 - 852752 aaagctt-gggctgtgacacattggaatg-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35905769 2067 - 65901067 I a score=1069417.000000 s hg38.chr17_GL383564v2_alt 98613 70 + 133151 tgtgtttaaagttttaaaagtggttaaaaGGTG-AAAAAAGAAAGGCT----AGAAACCAAACCTCAGAAAAATC s panTro5.chr17 16287771 70 + 83181570 tgtgtttaaagttttaaaagtggttaaaaGGTG-AAAAAAGAAAGGCT----AGAAACCAAACCCCAgaaaaatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192633 70 + 83442489 tgtgtttaaagttttaaaagtggttaaaaGGTG-AAAAAAGAAAGGCT----AGAAACCAAACCCCAGAAAAATC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027664 70 + 4267968 tgtgtttaaagttttaaaagtggttaaaaGGTG-AAAAAAGAAAGGCT----AGAAACCAAACTCCAGAAAAATC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2009988 70 - 2193130 tgtgttTAAAGTTTTAAAAGTGGTTAAAAGGTG-AAAAAAGAAAGGCT----AGAAACCAAACCCCAGAAAAATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080660 70 - 77216781 TGTGTTTAAAGTTTTAAAAGCGGTTAAAAGGCG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAgaaaaatc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992919 70 - 80997621 TGTGTTTAAAGTTTTAAAAGCGGTTAAAAGGCG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAGAAAAATC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050627 70 + 10377808 TGTGTTTAAAGTTTTAAAAGCGGTTAAAAGGCG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAGAAAAATC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935572 70 - 8458610 TGTGTTTAAAGTTTTAAAAGCGGTTAAAAGGCG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAgaaaaatc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891079 70 + 75148670 TGTGTTTAAAGTTTTACAAGTGGTTAAAAGGCG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAGAAAAATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120609 70 + 4244037 TGTGTTTAAAGTTTTAAAAGCGGTTAAAAGGCG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAgaaaaatc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2142973 70 + 4569836 tgtgttTAAAGTTTTAAAAGTGGTTAAAAGGTG-CAAAAAGAAAGGCT----AGAAACCAAACCCCAgaaaaacc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115765 70 - 159171411 TGTGTTTAAAGTTTTACAAGTGGTTAAAAGGTG-AAAAAAGGAAGGGT----AGAAACCAAGCCCCAGAAAAATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826420 70 + 3513951 TGTGTTTAAAGTTTTACGAGTGGTTAAAAGGTG-AAAAAAGGAAGGGT----AGAAACCAAGCCCCAGAAAAAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874896 70 + 1920343 tgtgttCAAAGTTTTACAAGTGGTTAAAAGGTA-AAAAACGGAAGGGT----AGAAACCAAGCCCCAGAAAAATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991610 70 - 7032639 tgtgtttaaagttttacaagtggttaaaaGGTG-AAAAAAGGAAGGGT----AGAAACCAAGCCCCAGAAAAATC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35907836 71 - 65901067 tgtgtttaaagttttaaaaatggttaaaaGAAGAAAAAAAGAAAGGCT----GGAAACCAAGTCCCAGAAAAATC i micMur3.chr16 I 2067 I 956 s proCoq1.NW_012135969v1 2995518 70 + 8555354 tgagtttaatgttttaaaaatggttaaaaGAAG-AAAAAAGAAAGGCT----AGAAACCAAATCCCAGAGAAATC i proCoq1.NW_012135969v1 I 2 C 0 s otoGar3.GL873537 22810296 74 + 28711273 TGTGTTTAAAGTTTTAAAAATGGTTAGAAGAAG-AAAAAGGAAAGACTAGAAAGAAACCAAGTCCCAGAAAAATA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424300 68 + 61074082 tgtgtTTAAAATTTTAAAAATGGTTAAAAGATG-AAAAGAGAAAA--T----ACAAAGCAAGCCCCAGAAAAATC i canFam3.chr9 I 22 C 0 s dasNov3.JH570468 408956 50 - 852752 tgtgCTTAAACT-----------------GAtg-gaaaaagga---ct----gtacatcaagccccagaaaaatc i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I a score=252540.000000 s hg38.chr17_GL383564v2_alt 98683 19 + 133151 ATGCAT-TTGAAAGTGACTG s panTro5.chr17 16287841 19 + 83181570 atgcgt-ttgaaagtggctg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192703 19 + 83442489 ATGCAT-TTGAAAGTGACTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027734 19 + 4267968 ATGCAT-TTGAAAGTGACTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010058 19 - 2193130 ATGCAT-TTGAAAGTGACTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080730 19 - 77216781 atgcat-ttgaaagtgactg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27992989 19 - 80997621 ATGCAT-TTGAAAGTGACTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050697 19 + 10377808 ATGCAT-TTGAAAGTGACTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935642 19 - 8458610 atgcat-ttgaaagtgactg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891149 19 + 75148670 ATGCAT-TTGAAAGTGACTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120679 19 + 4244037 atgcat-ttgaaagtggctg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143043 19 + 4569836 atgcat-ttgaaagtgactg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115835 19 - 159171411 ATGCAT-TTGAAAATgactg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826490 19 + 3513951 ATGCAT-TTGAAAATGACTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874966 19 + 1920343 ATGCAT-TTGAAAATGACTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991680 19 - 7032639 ATGCAT-TTGAAAATGACTG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2995588 19 + 8555354 TTGTGT-TTGAAAATGACTG i proCoq1.NW_012135969v1 C 0 I 394 s otoGar3.GL873537 22810370 18 + 28711273 --GAGTAATGAAAATTGCTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424368 19 + 61074082 TTGGGT-TTGAAAAAGATTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409006 19 - 852752 ctgggt-ttgaaacctactg i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35907907 956 - 65901067 I a score=1371752.000000 s hg38.chr17_GL383564v2_alt 98702 128 + 133151 CTTTAGTTTTCAATCTGGTTTCAGTCTTG-TAACCTCTATCTGTATCTCAGCCTGCATTGTGTTA-CTATGctttt-taagccacggtttcttaaactgaaaa--tgggagactaataaccacctcacttttt s panTro5.chr17 16287860 128 + 83181570 ctttagttttcaatctggtttcagtcttg-taacctctatctgtatctcagcctgcattgtgtta-ctatgctttt-taagccacggtttcttaaactgaaaa--tgggagactaataaccacctcacttttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192722 128 + 83442489 CTTTAGTTTTCAATCTGGTTTCAGTCTTG-TAACCTCTATCTGTATCTCAGCCTGCATTGTGTTA-CTATGctttt-taagccacggtttcttaaactgaaaa--tgggagactaataaccacctcacttttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027753 128 + 4267968 CTTTAGTTTTCAATCTGGTTTCAGTCTTG-TAACCTCTATCTGTATCTCAGCCTGCATTGTGTTA-CTATGctttt-taagccacggtttcttaaactgaaaa--tgggagactaataaccacctcatttttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010077 129 - 2193130 CTTTAGTTTTCAATCTGGTTTCAGTCTTGTTAACCTCTGTCTGTATCTCAGCCTACAGTGTgtta-ctaggctttt-taaaccatggtttcttgaactgaaag--tgggagactaataaccacctcatttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080749 128 - 77216781 ttttagttttcaatctggtttcagtctta-taacttctatctgtatctcagcctaaagtgtgtta-ctaggctttt-taagccaaggtttcttaaactgaaaa--tgggagactaataactacctcattttct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993008 128 - 80997621 TTTTAGTTTTCAATCTGGTTTCAGTCTTA-TAACTTCTATCTGTATCTCAGCCTGAAGTGTGTTA-CTAGGCTTTT-TAAGCCAAGGTTTCTTAAACTGAAAA--TGGGAGACTAATAACTACCTCATTTTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050716 128 + 10377808 TTTTAGTTTTCAATCTGGTTTCAGTCTTA-TAacttctatctgtatctcagcctgaagtgtgtta-ctaggctttt-taagccaaggtttcttaaactgaaaa--tgggagactaataactacctcattttct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935661 128 - 8458610 ttttagttttcaatctggtttcagtctta-taacttctacctgtatctcagcctgaagtgtgtta-ctaggctttt-taagccaaggtttcttaaactgaaaa--tgggagactaataactacctcattttct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891168 128 + 75148670 TTTTAGTTTTCAATCTGGTTTCAGTCTTA-TAACCTCTATCTGTATCTCAGCCTGAAGTGTGTTA-CTAGGCTTTT-AAAGCCACGGTTTCTTAAACTGAAAA--TGGGAGACTAATAACCACCTCATTTTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120698 128 + 4244037 ttttagttttcaatctggtttcagtctta-taacttctatctgtatctcagcctgaagtgtgtta-ctaggctttt-taagccaaggtttcttaaactgaaaa--tgggagactaataactacctcattttct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143062 128 + 4569836 ttttagttttcaatctggtttcagtcttg-taacctctaactgtatctcagcctgaagtgtgcta-ctaggctttt-aaagccacgggttcttaaactgaaaa--tgggagactaataaccacctcattttct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46115854 119 - 159171411 ctttag-------tctggtttcaggcttg-taacctctatctgtatctcagcccaca--gtgtta-ctaggcttct-tgagcctcagttttttaaactgaaaa--cgagagactaataatcacctcatatttt i calJac3.chr5 C 0 I 299 s saiBol1.JH378271 1826509 126 + 3513951 CTTTAGTTTTTAATCTGGTTTCAGTCTTG-TAACCTCTATCTGTATCTCAGCCCACA--GTgtta-ctaggcttct-tgagcttcagttttttaaactgaaaa--tgagagactaataatcacctcatttttt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1874985 126 + 1920343 CTTTAGTTTTTAATCTGGTTTCAGTCTTA-TAACCTCTATCTGTATGTCAGCCCACA--GCGTTA-CTAGGCTTCT-TGAGCCTCAGTTTTTTAAACTGAAAA--TGAGAGACTCATAATCACCGCAtttttt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6991699 126 - 7032639 CTTTAGTTTTTAATTTGGTTTCAGTCTTG-TAACCTCTATCTGTATCTCAGCCCACA--GTgtta-ctaggcttct-tgaccctcagttttttaaactgaaaa--tgagagactaataatcacctcatttttt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810388 118 + 28711273 ATTTAGTTTTTGATGTGAATTC--------TAACTTCTGTCAGTATCTCAGCCCTCAGTGTgtca-cttgacctctctcggcctcagtttcttaagctataaa------aggataaccgcttcctcgccttta i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21424387 123 + 61074082 CTTTAGTTTTCAATCTGAATT-------G-TAACCTCTACCTGAATCTTACCATTCAGTGTgtca-cggggcctgtctgagcctcagtttcttaatctgtaaagtggggagaataatgaccactttgtagct- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409025 124 - 852752 ctttagttttctatctgaatt-------g-aaacctttctctgaaccccagtcctcagtgtggtatttgggctctc-caagcctcagtttcttaatttgtgaagtggggtaaacaataaccatcccatagttt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I a score=22502.000000 s hg38.chr17_GL383564v2_alt 98830 3 + 133151 ---ttt s panTro5.chr17 16287988 3 + 83181570 ---ttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192850 3 + 83442489 ---ttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027881 3 + 4267968 ---ttt i gorGor5.CYUI01015385v1 C 0 I 1 s nomLeu3.chrUn_GL397460_1 2010206 3 - 2193130 ---ttt i nomLeu3.chrUn_GL397460_1 C 0 I 2 s rheMac8.chr16 30080877 3 - 77216781 ---ttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993136 3 - 80997621 ---TTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050844 3 + 10377808 ---ttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935789 3 - 8458610 ---ttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891296 3 + 75148670 ---TTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120826 3 + 4244037 ---ttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143190 3 + 4569836 ---ttt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116272 3 - 159171411 ---ttt i calJac3.chr5 I 299 I 5 s saiBol1.JH378271 1826635 3 + 3513951 ---ttt i saiBol1.JH378271 C 0 I 305 s cebCap1.NW_016107730v1 1875111 3 + 1920343 ---ttt i cebCap1.NW_016107730v1 C 0 I 181 s aotNan1.NW_018502359v1 6991825 3 - 7032639 ---ttt i aotNan1.NW_018502359v1 C 0 I 313 s otoGar3.GL873537 22810507 2 + 28711273 ---tt- i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21424510 3 + 61074082 ---ttt i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409149 3 - 852752 aaa--- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I a score=70116.000000 s hg38.chr17_GL383564v2_alt 98833 9 + 133151 -aaataaagg s panTro5.chr17 16287991 9 + 83181570 -aaataaggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192853 9 + 83442489 -aaataaggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027885 9 + 4267968 -agataaggg i gorGor5.CYUI01015385v1 I 1 C 0 s nomLeu3.chrUn_GL397460_1 2010211 9 - 2193130 -aaataaagg i nomLeu3.chrUn_GL397460_1 I 2 C 0 s rheMac8.chr16 30080880 9 - 77216781 -aaataaggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993139 9 - 80997621 -AAATAAGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050847 9 + 10377808 -aaataaggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935792 9 - 8458610 -aaataaggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891299 9 + 75148670 -AAATTAGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120829 9 + 4244037 -aaataaggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143193 9 + 4569836 -aaataaggg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116280 9 - 159171411 -aaacaaggc i calJac3.chr5 I 5 C 0 s saiBol1.JH378271 1826943 9 + 3513951 -aaacaaggc i saiBol1.JH378271 I 305 C 0 s otoGar3.GL873537 22810509 9 + 28711273 -ttagaaggc i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21424513 9 + 61074082 -aaataaaga i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409152 9 - 852752 aaaacaagg- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e aotNan1.NW_018502359v1 6991828 313 - 7032639 I e cebCap1.NW_016107730v1 1875114 181 + 1920343 I a score=12376.000000 s hg38.chr17_GL383564v2_alt 98842 1 + 133151 t s panTro5.chr17 16288000 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192862 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027894 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010220 1 - 2193130 t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080889 1 - 77216781 t i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993148 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050856 1 + 10377808 t i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935801 1 - 8458610 t i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891308 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120838 1 + 4244037 t i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143202 1 + 4569836 t i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116289 1 - 159171411 t i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826952 1 + 3513951 t i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875295 1 + 1920343 T i cebCap1.NW_016107730v1 I 181 C 0 s canFam3.chr9 21424522 1 + 61074082 t i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409161 1 - 852752 t i dasNov3.JH570468 C 0 I 1 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e otoGar3.GL873537 22810518 1 + 28711273 I e aotNan1.NW_018502359v1 6991828 313 - 7032639 I a score=470031.000000 s hg38.chr17_GL383564v2_alt 98843 35 + 133151 agaatcagattatgtt-gcaaagatgctcaacccaa s panTro5.chr17 16288001 35 + 83181570 agaatcagattatgtt-gcaaagatgctcaacccaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192863 35 + 83442489 agaatcagattatgtt-gcaaagatgctcaacccaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027895 35 + 4267968 agaatcagattatgtt-gcaaagatgctcaacccaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010221 35 - 2193130 agaatcagattatgtt-gcaaagatgctcaacccaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080890 35 - 77216781 agaatgagattatgtt-gcaaagatgctcaacccaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993149 35 - 80997621 AGAATGAGATTATGTT-GCAAAGATGCTCAACCCAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050857 35 + 10377808 agaatgagattatgtt-gcaaagatgctcaacccaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935802 35 - 8458610 agaatgagattatgtt-gcaaagatgctcaacccaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891309 35 + 75148670 AGAATGAGATTATGTT-GCAAAGGTGCTCAACCCAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120839 35 + 4244037 agaatgagattatgtt-gcaaagatgctcaacccaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143203 35 + 4569836 agaatgagattatgtt-gcaaaggtgctcagcccaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116290 35 - 159171411 agaatgagattatgtt-gcaaaggtgctcaacccaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826953 35 + 3513951 agaatgagattatgtt-gcaagggtgctcaacccaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875296 35 + 1920343 AGAATGAGATTACGTC-GCAAAGGTGCTCGACCCAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992141 35 - 7032639 agaatgagattatgtt-gcaaaggtgctcaacccaa i aotNan1.NW_018502359v1 I 313 C 0 s otoGar3.GL873537 22810519 36 + 28711273 ggaatgagattatgttggtaaagatgcttaacccga i otoGar3.GL873537 I 1 I 2 s canFam3.chr9 21424523 36 + 61074082 gggatgagattacgttggtaaaggtgcttaactcaa i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409163 36 - 852752 ggaatgaaattatgttggtcaaggtgctgagcccaa i dasNov3.JH570468 I 1 I 2 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I a score=1287671.000000 s hg38.chr17_GL383564v2_alt 98878 121 + 133151 ccagatacatcataagtgtcc-ag-taaatggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CATCACAGGGTCTCCACAGCCTTGAGAATAAAAGGTTT s panTro5.chr17 16288036 121 + 83181570 ccagatacatcataagtgtcc-ag-taaatggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CATTACAGGGTCTCCACAGACTTGAGAATCAAAGGTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16192898 121 + 83442489 ccagatacatcataagtgtcc-ag-taaatggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CATTACAGGGTCTCCACAGACTTGAGAATCAAAGGTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4027930 121 + 4267968 ccagatacatcgtaagtgtcc-ag-taaatggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CATTACAGGGTCTCCACAGCCTTGAGAATCAAAGGTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010256 120 - 2193130 ccagatacatcgtaagtgtcc-ag-taaatggagttcctattCACTT-CTTAGCAGC----------------CCTGCATTCTGACTCCTTTCCTGTTGCT----CAGGACAGGGTCTCCACAGACTTGAGAATCAAAGGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30080925 121 - 77216781 ctagatacattgtaggtgtcc-ag-taaacggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CAGGACACAGACTCCACAGCCTTGAGAATCAAAGGTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993184 121 - 80997621 CTAGATACATTGTAGGTGTCC-AG-TAAACGGAGTTCCTATTCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CAGGACACAGACTCCACAGCCTTGAGAATCAAAGGTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2050892 121 + 10377808 ctagatacattgtaggtgtcc-ag-taaacggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CAGGACACAGACTCCACAGCCTTGAGAATCAAAGGTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935837 121 - 8458610 ctagatacattgtaggtgtcc-ag-taaagggagttcctattCACTTCCTTAGCAAC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CAGGACACAGACTCCACAGCCTTGAGAATCAAAGGTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891344 121 + 75148670 CCAGATACACCATAGGTGTCC-AG-TAAACGGAGTTCCTATTCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CAGGACACAGACTCCACAGCCTTGAGAATCAAAGGTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120874 121 + 4244037 cgagatacattgtaggtgtcc-ag-taaacggagttcctattCACTTCCTTAGCAGC----------------CCTGCATTCTGACCCCTTTCCTATTGCT----CAGGACACAGACTCCACAGCCTTGAGAATCAAAGGTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143238 122 + 4569836 ccggatacatcgtaggtgtcc-agttaaatggagttcctattCACTTCCTTAGCAGT----------------GCTGCATTCTGACCCCTTTCCTGTTGCT----CAGGACACGGACTCCACAGCCTTGAGAATCAAAGGTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116325 121 - 159171411 ccagatacatcgtaggtgtgt-ag-taaatggagttcctattCACTTCCTTAGCAGT----------------CCTGCATTCTGACTTCTTTCCTATTACT----CAGGACACGGACTCCACAGCCTTGAGAATAAAAGGTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1826988 121 + 3513951 ccagatacatcgtaggtgtgc-ag-taaatggagttcCCATTCACTTCCTTAGCAGT----------------CCTGCATTCTGACTTCTTTCCTATTACT----CAGGACACGGACTCCACAGCCTTGAGAATAAAAGGTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875331 121 + 1920343 CCAGATACGTCGTAGGTGTGC-AG-TAAATGGAGTTCCTATTCACTTCCTTAGCAGT----------------CCTGCATTCTGACTTCTTTCCTATTATT----CACGACACGGACTCCACAGCCTTGAGAATAAAAGGTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992176 121 - 7032639 ccagatacatcgtaggtgtgt-ag-taaatggagttcctattCACTTCCTTAGCAGT----------------CCTGCATTCTGACTTCTTTCCTATTACT----CAGGACATGGACTCCACAGCCTTGAGAATAAAAGATTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810557 140 + 28711273 cctgagttataccaggtgccc-ag-taaatggaaatattattCACTTCCTTAGGGGCCCAAGGAGACTGTATTCCTGCACCCTGACCCC-TTCCCATTACTCAGGCAGGACAGGGACTCCACATGGTGAACACTGAAAGGTTT i otoGar3.GL873537 I 2 C 0 s dasNov3.JH570468 409201 118 - 852752 cccagcacaaagaaggtgggtgag-gaagggtagcctctgttCCCT--CTTAGCCAT----------------ACTGAGAAATCATCCCTATCCCATTGCT----CAGCCCAGAAAATT--CAGTCTTGAGAGTCAACAGTGT i dasNov3.JH570468 I 2 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e canFam3.chr9 21424559 0 + 61074082 C a score=1340886.000000 s hg38.chr17_GL383564v2_alt 98999 116 + 133151 TGCTCATTTGAGTCCTTCAGTAACCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAAATTGAGGGTTGTAGAAGACAGGCCAGATG-GGACAAGAAACTGAAGAATCTGAGCTCGAGGG s panTro5.chr17 16288157 116 + 83181570 TGCTCATTTGAGTCCTTCAGTAACCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAAATTGAGGGTTGTAGAAGACAGGCCAGATG-GGACAAGAAACTGAAAAATCTGAGCTTGAGGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193019 116 + 83442489 TGCTCATTTGAGTCCTTCAGTAACCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAAATTGAGGGTTGTAGAAGACAGGCCAGATG-GGACAAGAAACTGAAAAATCTGAGCTCGAGGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028051 116 + 4267968 TGCTCATTCGAGTCCTTCAGTAACCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAAATTGAGGGTTGTAGAAGACAGGCCAGATG-GGACAAGAAACTGAAGAATCTGAGCTCGAGGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010376 116 - 2193130 TGCTCATTGGAGTCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAAATTGAGGGTTGTAGAAGACGGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTTGAGGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081046 116 - 77216781 CCCTCATTCGAGCCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTCCTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTTGAGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993305 116 - 80997621 CCCTCATTCGAGCCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTCCTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTTGAGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051013 116 + 10377808 CCCTCATTCGAGCCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTCCTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTTGAGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1935958 116 - 8458610 CGCTCATTCGAGCCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTCCTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTCGAGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891465 116 + 75148670 CGCTCATTCGAGCCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTCCTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTCCAGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2120995 116 + 4244037 CGCTCATTCGAGCCCTTCAGTACCCAGGTGAGA-ATCTAGTTTCAGGTCTTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-GGGCAAGAAACTGAAGAATCTGAGCTCGAGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143360 116 + 4569836 TGTTCATTCGAGCCCTTCAGTACCCAGGTGCGA-ATCTAGTTTCAGGTCCTCTCAAACTGAGGGTTGTAGAAGACAGGCCAGACG-CGGCAAGAAACTGAAGAATCTGAGCTCGAGGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116446 116 - 159171411 TGCTCACGCCAGCCCTTCAGGACCCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAGATTGCGGGTTGCAGAATACTGGCCGGACA-GGGCGAGAAACGGAAGAATCTGAGCTCAAGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827109 116 + 3513951 TGCTCATTCCAGCTCTTCAGAACCCAGGTGAGA-ATCTAGTTTCAGGTTCTCTCAAATAGAGGGTTATAGAATACTGGCCGGACA-GGGCAAGAAACTGAAGCATCTGAGCTCAAAGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875452 116 + 1920343 TGCTCATTCCAGCCCTTCAGGACCCAGGTGAGA-ATATAGTTTCAGTTTCTCTCAAATTGAGGGTTGTAGAATACTGGCCGGACA-GGGCAAGAAACTGTAGAATCTGAGCTCAAAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992297 116 - 7032639 TACTCATTCCAGCCCTTCAGGACCCAGGTGAGA-ATCTAGTTTCAGCTTCTCTCAAATTGAGAGTTGTAGAATACCGGCCGGACA-GGGCAAGAAACTGAAGAATCTGAGCTCAAAGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810697 108 + 28711273 AGCAGACCAGAGCCCTTTGGTACTCAGGTAGGA-AACT-GCTTCAAGTTTCCTCAAGTTGAGGGCGGTAGAAGACTGGTTGGCTG-GGGCAAGGAGCTG-AGGATCTGGGAC------ i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424559 118 + 61074082 tgcTGATTCAAGTCCTTTGGCATCCAGGTTAGGTGCCTGGTTTCAAGTTTCCTCAAGTTGAGGGCTGTAGAAAACTGGCTGGATGCAAGCAAGAGGCTGAGGAATCTGAGCTTGAGGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409319 92 - 852752 TGCTGACTTGAGCCCTTTAGCACCCAGGAAAGG-AACTCATTTCAAGATCCCTCAAATTGA-------------------------GGGCAAAGGGCCGAGGAGTCTGAGCTCCAGGC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2995607 394 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I a score=372351.000000 s hg38.chr17_GL383564v2_alt 99115 26 + 133151 CTGAGAATCAGAGAGAAATGAATTCA s panTro5.chr17 16288273 26 + 83181570 CTGAGAATCAGAGAGAAATGAATTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193135 26 + 83442489 CTGAGAATCAGAGAGAAATGAATTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028167 26 + 4267968 CTGAGAATCAGAGAGAAATGAATTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010492 26 - 2193130 CTGAGAATCACAGAGAAATGAATTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081162 26 - 77216781 CTGAGAATCAGAGAGAAAAGAATTCG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993421 26 - 80997621 CTGAGAATCAGAGAGAAAAGAATTCG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051129 26 + 10377808 CTGAGAATCAGAGAGAAAAGAATTCG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936074 26 - 8458610 CTGAGAATCAGAGAGAAAAGAATTCG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891581 26 + 75148670 CTGAGAATCAGAGAGAAAAGAATTCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121111 26 + 4244037 CTGAGAATCAGAGAGAAAAGAATTCG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143476 26 + 4569836 CCGAGAATCAGAGAAAAAAGAATTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116562 26 - 159171411 CTAAGAATCAGAGAGAAATGAATTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827225 26 + 3513951 CTGAGAATCAGAGAGAAATGAATTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875568 26 + 1920343 CTGAGAATCAGAGAGAAATGAATTTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992413 26 - 7032639 CTGAGAATCAGAGAGAAATGAATTCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2996001 26 + 8555354 CTGAGAATCAGAGAGAAATGACTTCA i proCoq1.NW_012135969v1 I 394 I 499 s otoGar3.GL873537 22810805 24 + 28711273 CTAAGAATCAGAGGG--ATGACTTCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424677 26 + 61074082 CTGAGAATCAGAGTTAAATGAATTCA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409411 26 - 852752 CTGAGAGCCAGGGATAAATGGATTCA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e micMur3.chr16 35907907 956 - 65901067 I a score=32661.000000 s hg38.chr17_GL383564v2_alt 99141 2 + 133151 GA s panTro5.chr17 16288299 2 + 83181570 GA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193161 2 + 83442489 GA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028193 2 + 4267968 GA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010518 2 - 2193130 GA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081188 2 - 77216781 GA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993447 2 - 80997621 GA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051155 2 + 10377808 GA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936100 2 - 8458610 GA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891607 2 + 75148670 GA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121137 2 + 4244037 GA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143502 2 + 4569836 GA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116588 2 - 159171411 GA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827251 2 + 3513951 GA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875594 2 + 1920343 GA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992439 2 - 7032639 GA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810829 2 + 28711273 GA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424703 2 + 61074082 GA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 409437 2 - 852752 GA i dasNov3.JH570468 C 0 I 9 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I a score=265824.000000 s hg38.chr17_GL383564v2_alt 99143 25 + 133151 TGTGCCTG-----------------------------------CATGCATCtgtgtgggt s panTro5.chr17 16288301 25 + 83181570 TGTGCCTG-----------------------------------CATGCATCtgtgtgggt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193163 25 + 83442489 TGTGCCTG-----------------------------------CATGCATCtgtgtgggt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028195 25 + 4267968 TGTGCCTG-----------------------------------CATGCATCtgtgtgggt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010520 25 - 2193130 TGTGCCTG-----------------------------------CATGCATCtgtgtgggt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081190 25 - 77216781 TGTGCCTG-----------------------------------CATGCATCTGCGTGGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993449 25 - 80997621 TGTGCCTG-----------------------------------CATGCATCTGCGTGGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051157 25 + 10377808 TGTGCCTG-----------------------------------CATGCATCTGCGTGGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936102 25 - 8458610 TGTGCCTG-----------------------------------CATGCATCTGCGTGGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891609 25 + 75148670 TGTGCCTG-----------------------------------CATGCATCTGTGTGGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121139 25 + 4244037 TGTGCCTG-----------------------------------CATGCATCTGCGTGGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143504 25 + 4569836 TGTGCCTG-----------------------------------CATGCATCtgtgtgggt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116590 25 - 159171411 TGCGGCTG-----------------------------------CGTGCATCTGTGTGGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827253 25 + 3513951 TGTGGCTG-----------------------------------CGTGCATCTGTGTGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875596 25 + 1920343 TGTGGCTG-----------------------------------CGTGCATCTGTGTGGGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992441 25 - 7032639 TGTGGCTG-----------------------------------TGTGCATCTGTGTGGGT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810831 60 + 28711273 TGTGCATGGGACACGCTTACATGCCTGTGTTTGTGTGCACAGCCATACACCtgtgtgtct i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424705 22 + 61074082 CGTGCTCG-----------------------------------TTTGCATGTGTGTG--- i canFam3.chr9 C 0 C 0 e mm10.chr11 22071454 1561 - 122082543 I e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e dasNov3.JH570468 409439 9 - 852752 I a score=1448108.000000 s hg38.chr17_GL383564v2_alt 99168 140 + 133151 ctgtgcacctatgct--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGAAACTGGTGGTATTTTTGCTGATTATAACAATCAGAATTTTCAAATGGAAAGATAAAAGT s panTro5.chr17 16288326 140 + 83181570 ctgtgcacctatgct--t------------------------------------------------------------------------------------------------gtgtgtgtgaatgcaggtgtg----tgtgcgtgctgtgGTAGGAGGAAGATGGCTAATTATGATTATGAAACTGGTGGTATTTTTGCTGATTATAACAATCAAAATTTTCAAATGGAAAGATAAAAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193188 140 + 83442489 ctgtgcacctatgct--t------------------------------------------------------------------------------------------------gtgtgtgtgaatgcaggtgtg----tgtgcgtgctgtgGTAGGAGGAAGATGGCTAATTATGATTATGAAACTGGTGGTATTTTTGCTGATTATAACAATCAAAATTTTCAAATGGAAAGATAAAAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028220 140 + 4267968 ctgtgcacctatgct--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTACGATTATGaaactggtggtatttttgctgattataacaatcagaattttcaaatggaaagataaaagt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010545 140 - 2193130 ctgtgcacctatgct--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtttg----tgtgcatgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGAAACTGGTGGTATTTTCGCTGATTATAACAATCAGAATTTTCAAATGGAAAGATAAAAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081215 135 - 77216781 CTGTGCACCTATGCT--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGaaactggtggcattttcgctgattataacaatcagaattttcaaatggaaagat-----t i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27993474 135 - 80997621 CTGTGCACCTATGCT--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGAAACTGGTGGCATTTTCGCTGATTATAACAATCAGAATTTTCAAATGGAAAGAT-----T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051182 135 + 10377808 CTGTGCACCTATGCT--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGaaactggtggcattttcgctgattataacaatcagaattttcaaatggaaagat-----t i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936127 135 - 8458610 CTGTGCACCTATGCT--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGaaactggtggcattttcgctgattataacaatcagaattttcaaatggaaagat-----t i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64891634 231 + 75148670 CTGTGCACCAATGCT--TGTGTGTGTGCGTGCAGGTGTGTGTGCGTGCAGGTGTGTGTGAGTGCAGGTGTGTGTGCGTGCAGGTGTGTGTGCGTGCAGGTGTGTGTGCGTGCAGGTGTGTGTGAGTGCAGGTGTG----TGTGCGTGCTGTGTTAGGAGGAAGATGGCTAATTATGATTATGAAACTGGTGGCATTTTTGCTGATTATAACAATCAGAATTTTCAAACGGAAAGAT-----T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121164 135 + 4244037 CTGTGCACCTATGCT--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGaaactggtggcattttcgctgattataacaatcagaattttcaaatggaaagat-----t i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2143529 135 + 4569836 ctgtgcacctatgct--t------------------------------------------------------------------------------------------------gtgtgtgtgagtgcaggtgtg----tgtgcgtgctgtgtTAGGAGGAAGATGGCTAATTATGATTATGaaactggtggcattttcgctgattataacaatcagaattttcaaatggaaagat-----t i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116615 138 - 159171411 CTGTGCACCTATGCCAgt------------------------------------------------------------------------------------------------gtgtgtgtgtgt----gtgtg----tgtgagtgCTAGGTTAGGAGGAAGATGGCTAATTGTGATTACGAAACTGGTGGTATTTTCACTGATTATAACAAGCAGAATTTTCAAATGGAAAGATAAAAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827278 136 + 3513951 CTGTGCACCTATGCC--t------------------------------------------------------------------------------------------------gtgtgtgtgtgt----gtgtg----tgtgagtgCTGGGTTAGGAGGAAGATGGCTAATTATGATTACGAAACTGGTGGTACTGTCGCTGATTATAACAATCAGAATTTTCAAATGGAAAGATAAAAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875621 128 + 1920343 CTGTGCGCCTATGCC----------------------------------------------------------------------------------------------------------TGTgt----gtgtg----tgtgagtgctgggttaggaggaagatggctaattatgattacgaaactggtggtattttcgctgattataacaatcagaattttcaaatgggaagataaaagt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992466 128 - 7032639 CTGTGCACCTATGCC----------------------------------------------------------------------------------------------------------TGTGT----ATGTG----TGTGAGTGCTGGGTTAGGAGGAAGATGGCTAATTATGATTACGAAACTGGTGGTATTTTCACTGATTATAACAATCAGAATTTTCAAATGGAAAGATAAAAGT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22810891 143 + 28711273 atgtgcacctacgcg--t------------------------------------------------------------------------------------------------atgaatgtgagtgcaggtgtgtgcatgtgtgtgtTATGCTAGGAGGAAGCTGGCTAGTTATAATTATTAAGTTGGTGGTGTTGCCACTGATTATAATACTCAGAATTTTCAAATGGG-AGATAAAAGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22073015 120 - 122082543 CTCTCCACTTGTGTT--T------------------------------------------------------------------------------------------------GTGTGTGT-----------------TGTTATTGTTGTGTTAGGAGGACATTT-----CTATGATCAGCACAC--GTGGTATTTTCACCAATGACAATCATCAGAATTGTCCCAGGGGAGGACAGAAGC i mm10.chr11 I 1561 C 0 s canFam3.chr9 21424727 106 + 61074082 -----------------------------------------------------------------------------------------------------------------------------------CATG-----ACATGTGTCAACTTAAGAGGCAGGCAAATAGTTGAGACTAGTAAACTAGTGGCCTTTTTGCAGATTATAGCAATCAGAATTTTCCAACAGGAAGatacaagt i canFam3.chr9 C 0 I 4 e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e dasNov3.JH570468 409439 9 - 852752 I a score=660065.000000 s hg38.chr17_GL383564v2_alt 99308 62 + 133151 AAAGCACAGAGCtggtggtgtcaaagtcataggaattttagtcac-------tttatgggaactggttt-- s panTro5.chr17 16288466 62 + 83181570 AGAGCACAGAGCtggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactggttt-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193328 62 + 83442489 AGAGCACAGAGCtggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactggttt-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028360 62 + 4267968 aaagcacagagctggtggtgtcaaagtcataggaatttcagtcaa-------tttatgggaactcgttt-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010685 62 - 2193130 AAAGCACAGAGCTGTTAgtgtcaaagtcataggaatttcagtcac-------tttaggggaactggttt-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081350 62 - 77216781 aaagcacagagctggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactgattt-- i rheMac8.chr16 C 0 I 305 s macFas5.chr16 27993609 62 - 80997621 AAAGCACAGAGCtggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactgattt-- i macFas5.chr16 C 0 I 306 s macNem1.NW_012014910v1 2051317 62 + 10377808 aaagcacagagctggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactgattt-- i macNem1.NW_012014910v1 C 0 I 301 s cerAty1.NW_012006043v1 1936262 62 - 8458610 aaagcacagagctggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactgattt-- i cerAty1.NW_012006043v1 C 0 I 316 s chlSab2.chr16 64891865 62 + 75148670 AAAGCACAGAGCtggtggtgtcaaagtcataggaatttcagtcac-------tttatgggaactgattt-- i chlSab2.chr16 C 0 I 306 s manLeu1.NW_012106252v1 2121299 62 + 4244037 aaagcacagagctggtggtgtcaaagtcataggaatttcaatcac-------tttatgggaactgattt-- i manLeu1.NW_012106252v1 C 0 I 313 s colAng1.NW_012122154v1 2143664 62 + 4569836 aaagcacagagctggtggtatcaaagtcataggaatttcagtcac-------tttatgggaactgattt-- i colAng1.NW_012122154v1 C 0 I 310 s calJac3.chr5 46116753 62 - 159171411 AAAGCATAGAGCTGGTGGTGTCAAAGTCAGAGGAATTTCAGGCAC-------TTTATGGGAACTGGTTT-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827414 62 + 3513951 AAAGCATAGAGCtggtggtgtcaaagtcagaggaatttcagtcac-------tttatgggaactggttt-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875749 61 + 1920343 aaagcatagagccggtggtgtcaaagtcagaagaa-tacagacat-------tttatgcgaactggctt-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992594 62 - 7032639 AAAGCACAGAGCtggtggtatcaaagtcagaggaatttcaggcac-------tttatgggaactggttt-- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22811034 56 + 28711273 AAAGCACAGATATGATGGTATCAAAG----AGTAATTGTAGTCAC-------TTCTTG-GAGCTGATT--- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22073135 62 - 122082543 AAAGCATGGGTCTATCAGTGTCAATG---------TTTCGGTTATTGTTTCATTCATGGTAGCTGAAAATA i mm10.chr11 C 0 C 0 e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e dasNov3.JH570468 409439 9 - 852752 I e canFam3.chr9 21424833 4 + 61074082 I a score=1613048.000000 s hg38.chr17_GL383564v2_alt 99370 152 + 133151 ccacttatgcctattttctacacaggaaaccaacaatt-aagtgtatcattaaaGGCCTGGGTAAAATTTAAC---------GTGTTTGTATTTCCTGTTAATAATTATTTCAGACCTGCACATGCTGACTTCA-TC-TTGGTTGGTTGTGGAGGCTGACTGAC s panTro5.chr17 16288528 152 + 83181570 ccacttatgcctattttctacacaggaaaccaacaatt-aagtgtatcattaaaGGCCTGGGTAAAATTTAAC---------GTGTTTGTATTTCCTGTTAATAATTATTTCAGACCTGCACATGCTGACTTCA-TC-TTGGTTGGTTGTGGAGGCTGACTGAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193390 152 + 83442489 ccacttatgcctattttctacacaggaaaccaacaatt-aagtgtatcattaaaGGCCTGGGTAAAATTTAAC---------GTGTTTGTATTTCCTGTTAATAATTATTTCAGACCTGCACATGCTGACTTCA-TC-TTGGTTGGTTGTGGAGGCTGACTGAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028422 152 + 4267968 ccacttatgcctattttctacacaggaaaccaacaatt-aagtgtatcattaaaGGCCTGGGTAAAATTTAAC---------GTGTTTGTATTTCCTGTTAATAATTATTTCAGACCTGCACATGCTGACTTCA-TC-TTGGTTGGTTGTGGAGGCTGACTGAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010747 152 - 2193130 ccacttatggctattttctacacaggaaagcagtaatt-aagtatatcattaaaggtctgggtaaaatttaac---------gtatttgtaTTTCCTGCTAATAATTATTTCAGACCTGCACATGCTGACTTCG-TC-TTGGTTGGTTGTGGAGGCTGGCTGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081717 151 - 77216781 ccacttatgcctattttctacacaggaaagcaacaatt-aagtatatcattaaaagcctgggtaaaatttaac---------ctatttgtatttcattttaataattatttcagacctgcac-tgctgactttg-tc-ttggttggtcgtggagactggctgac i rheMac8.chr16 I 305 C 0 s macFas5.chr16 27993977 151 - 80997621 ccacttatgcctattttctacacaggaaagcaacaatt-aagtatatcattaaaagcctgggtaaaatttaac---------ctatttgtatttcatttTAATAATTATTTCAGACCTGCAC-TGCTGACTTTG-TC-TTGGTTGGTCGTGGAGACTGGCTGAC i macFas5.chr16 I 306 C 0 s macNem1.NW_012014910v1 2051680 151 + 10377808 ccACTTATGCCTATTTTCTACACAGGAAAGCAACAATT-AAGTATATCATTAAAAGCCTGGGTAAAATTTAAC---------CTATTTGTATTTCATTTTAATAATTATTTCAGACCTGCAC-TGCTGACTTTG-TC-TTGGTTGGTCGTGGAGACTGGCTGAC i macNem1.NW_012014910v1 I 301 C 0 s cerAty1.NW_012006043v1 1936640 152 - 8458610 ccacttatgcctattttctacacaggaaagcaacaatt-aagtatatcattaaaagcctgggtaaaatttaac---------ctatttgtatttcattttaataattatttcagacctgcacatgctgactttg-tc-ttggttggtcgtggagactggctgac i cerAty1.NW_012006043v1 I 316 C 0 s chlSab2.chr16 64892233 152 + 75148670 ccacttatgcctattttctacacaggaaagcaacaatt-aagtatatcattaaaAGCCTGGGTAAAATTTAAC---------CTATTTCTATTTCATTTTAATAATTATTTCAGACCTGCACATGCTGACTTTG-TC-TTGGTTGGTCGTGGAGACTGGCTGAC i chlSab2.chr16 I 306 C 0 s manLeu1.NW_012106252v1 2121674 152 + 4244037 ccACTTATGCCTATTTTCTACACAGGAAAGCAACAATT-AAGTATATCATTAAAAGCCTGGGTAAAATTTAAC---------CTATTTGTATTTCATTTTAATAATTATTTCAGACATGCACATGCTGACTTTG-TC-TTGGTTGGTCGTGAAGACTGGCTGAC i manLeu1.NW_012106252v1 I 313 C 0 s colAng1.NW_012122154v1 2144036 152 + 4569836 ccacttatgcctattttctacacaggaaagcaacaatt-aagtatatcattaaaagcctgggtaaaatttaac---------ctatttgtatttcattttaataattatttcagacctgcacatgctgactttg-tc-ttggttggtcgtggagactggctgac i colAng1.NW_012122154v1 I 310 C 0 s calJac3.chr5 46116815 149 - 159171411 CCACGTATGCCCATTTTCTACACAGGAAAGCAACACTTAAAGTATATCATTAAAGTCCTGGGTAAAATGTA-------------ATTTGTATTTCGTTTTAATGATTATTTCAGATCTGCACATGCTGACTTCG-TC-TTGATTGGTTGTGGAGCCTGGCTGAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827476 153 + 3513951 ccaggtatgcccattttctacacaggaaagcaacacttaaagtatatcattaaaGTCCTGGGTACAATGTAAC---------TTATTTGTATTTCGTTTTAATAATTATTTCAGGCCTGCACACGCTGGCTTCA-TC-TTGGTTGGTCGTGGAGCCTGGCTGAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875810 153 + 1920343 ccacgtatgcctattttctacataggaaagcaacacttaaagtatatcattaaaGTCCTGGGTAAAATGTAGC---------GTATTTGTATTTCGTTTTAATAGTTATTTCAGACCTGCACAGGCTGACTTCG-TC-TTGGTTGGTTGTGGAGCCTGGCTGAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992656 153 - 7032639 ccacatgcgcccattttctacacaggaaagcaacacttaaagtatatcattaaagtcctgggtaaaatgtaac---------gtatttgtatttcgttttaataattatttcagacctgcacatgctgacttcg-tc-ttggttggttatggagcctggctgac i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22811090 145 + 28711273 -----------------CTCCACTGGAAAGCAACAATT-AAGTTTCTCACGAAAGACCTGGGTAAAATTAATTTTGGATTTGGTATTTGGATTTTTTAAAAAATAACAATTCATACCTGCATGTGCTGACTTCG-TCGTTGGTTGGTTGTGGAGCCCAGCTGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22073197 142 - 122082543 GCCCTTATGCCTATTTTCCATTCAAAAATGCAACAGTT-AAGTTTATCACTGAAGGCCTGGTAAAAATGTTAC---------ATATCTGTATCTCAT-----------TTTCGTATCTTTCCATGCTAAATACATTC-TTAGTTGGTTGTAGGATATGGGTGGC i mm10.chr11 C 0 I 437 e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e dasNov3.JH570468 409439 9 - 852752 I e canFam3.chr9 21424833 4 + 61074082 I a score=416802.000000 s hg38.chr17_GL383564v2_alt 99522 39 + 133151 TGCTGGCTGCT--GTGAAACATGAGGGT-TACCAAGACCCTG s panTro5.chr17 16288680 39 + 83181570 TGCTGGCTGCT--GTGAAACATGAGGGT-TACCAAGATCCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193542 39 + 83442489 TGCTGGCTGCT--GTGAAACATGAGGGT-TACCAAGATCCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028574 39 + 4267968 TGCTGGCTGCT--GTGAAACATGAGGGT-TACCAAGACCCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010899 39 - 2193130 TGCTGGCCACT--GTGAAATATGAGGGT-TACCAAGACCCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081868 39 - 77216781 tgctggccact--gtgaaacatgagggT-TACCAAGACCCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994128 39 - 80997621 TGCTGGCCACT--GTGAAACATGAGGGT-TACCAAGACCCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051831 39 + 10377808 TGCTGGCCACT--GTGAAACATGAGGGT-TACCAAGACCCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936792 39 - 8458610 tgctggccact--gtgaaacatgagggT-TGCCAAGACCCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892385 39 + 75148670 TACTGGCCACT--GTGAAACACGAGGGT-TGCCAAGACCCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121826 39 + 4244037 TGCTGGCCACT--GTGAAACATGAGGGT-TGCCAAGACCCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144188 39 + 4569836 tgctggccact--gtgaaacatgagggT-TACCAAGACCCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46116964 39 - 159171411 TGCTGGCCACT--GGGAAACATGAGGGT-TGCCAAGACCTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827629 39 + 3513951 TGCTGGCCACT--GGGAAACATGAGGGT-TGCCAAGACCCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1875963 39 + 1920343 TGCTGGCCACT--GGGAAACATGAGGGT-TGCCAAGACCCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992809 39 - 7032639 tgctGGCCACT--GGGAAGCATGAGGGT-TGCCAAGACCCTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22811235 41 + 28711273 TGCTGACTGCTGAGAGAAGTGTGAGGATGTACCCAGACACC- i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22073339 437 - 122082543 I e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e dasNov3.JH570468 409439 9 - 852752 I e canFam3.chr9 21424833 4 + 61074082 I a score=903841.000000 s hg38.chr17_GL383564v2_alt 99561 102 + 133151 AGAGCAGAGG----GTGTGTGGTCCATTGTCAAAGAGCCAGGGGGACACGTGG--GAGGGTCACTGCGGGAAGTG-ACTGCAGGCCATGC---ATGGTAATGCACAGGTATG s panTro5.chr17 16288719 102 + 83181570 AGAGCAGAGG----GTGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGTGG--GAGGGTCACTGCGGGAAGTG-ACTGCAGGCCATGC---ATGGTAATGCACAGGTATG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193581 102 + 83442489 AGAGCAGAGG----GTGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGTGG--GAGGGTCACTGCGGGAAGTG-ACTGCAGGCCATGC---ATGGTAATGCACAGGTATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028613 102 + 4267968 AGAGCAGAGG----GTGTGTGGTCCATTGTCAAAGAGCCAGGGGGACACGTGG--GAGGGTCACTGCAGGAAGTG-ACTGCAGGCCATGC---ATGGCTATGCACAGGTATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2010938 102 - 2193130 ACAGCAGAGA----GTGTGTGGTCCATTGTCAAAGAGCCAGGGGGACACGTGG--GAGGGTCACTGCGGGAAGTG-ACCACAGGCCATTC---ATGGTAATGCACCAGTATG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30081907 102 - 77216781 AGAGCAGACA----CCGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAGTG-ACCACAGGCCATGC---ATGGTAATGCACAGGTATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994167 102 - 80997621 AGAGCAGACA----CCGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAGTG-ACCACAGGCCATGC---ATGGTAATGCACAGGTATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051870 102 + 10377808 AGAGCAGAGA----CCGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAGTG-ACCACAGGCCATGC---ATGGTAATGCACAGGTATG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936831 102 - 8458610 AGAGCAGAGA----CCGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAATG-ACCACAGGCCATGC---ATGGTAGTGCACAGGTATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892424 102 + 75148670 AGAGCAGAGA----CCGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAGTG-ACCACAGGCCATGC---ATAGTAGTGCACAGGTATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121865 102 + 4244037 AGAGCAGAGA----CCGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAGTG-ACCACAGGCCATGC---ATGGTAGTGCACAGGTATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144227 102 + 4569836 AGAGCAGAGA----CTGTGTGGTCCATTGTCAAAGAGCCAGGGGGACATGGGG--GAGGGTCACCATGGGAAGTG-ACCACAGGCCATGC---ATGGTAGTGCACAGGTATG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117003 89 - 159171411 AGAGCAGAGA----CTGTGTGGTCCATTGTCAAAGAGCCAAAGGGACACAGGG--GATGGTCACCACG--------------GGCCATGC---ACGGTAATGCACAGGTATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827668 89 + 3513951 AGAGCAGAGA----GCGTGTGGTCCATTGTCAAAGAGCCAGAGAGACATGGGG--GAAGGTCACCACG--------------GGCCATGC---ACGGTAATGCACAGGTATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876002 89 + 1920343 AGAGCAGAGA----GTGTGTGGTCCATTGTCAAAGAGCCAGAGGGACACAGGG--GACGGTCACCACG--------------GGCCATGC---ACGGTAATGCACAGGTATG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992848 89 - 7032639 AGAGCAGAGA----GTGTGTGGTCCATTGTCAAAGAGCCAGAGGGACACGGGG--GACGGTCACCACG--------------GGCCATGC---ACGGTAATGCACAGGTATG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22811276 69 + 28711273 AGGGCAGAGC----GTG------------------------AAGGGCATCAGG-----GGTCACTGTCAGAAGGGCACCACAGGCTGAAT---GCGTCAGTACCC------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22073776 107 - 122082543 AGAGAAGAGATGATGTGTGTGACCTGTGGCTGAAAGCCCAGGTGGAGAGGAGGCCAGAGGTCCCATTGGG--GTG-GCCCTAG--CATGCTGTGTGGCAAGCAGTAGACAAT i mm10.chr11 I 437 C 0 e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e dasNov3.JH570468 409439 9 - 852752 I e canFam3.chr9 21424833 4 + 61074082 I a score=2177048.000000 s hg38.chr17_GL383564v2_alt 99663 207 + 133151 ACCAGCACAG--AGGGACATGCCTCTAAGAAGGGTGCACTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTGAA-TGCTTTCTTGGTAA------GTGCTTAATTAGATTGG-TTCCCCACG---GCAGCATTTTATGAACTGAAGTGCATAGACAC-TTCAAGGGGCT-ATAAGAGGGAAAATATTCCATGGGTTAGAGATGGAG-AGAGG-AGCATCT s panTro5.chr17 16288821 207 + 83181570 ACCAGCACAG--AGGGACGTGCCTCTAAGAAGGGTGCACTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTGAA-TGCTTTCTTGATAA------GTGCTTAATTAGATTGG-TTCCCCACG---GCAGCATTTTATGAACTGAAGTGCATAGACAC-TTCAAGGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGCATCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193683 207 + 83442489 ACCAGCACAG--AGGGACGTGCCTCTAAGAAGGGTGCACTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTGAA-TGCTTTCTTGATAA------GTGCTTAATTAGATTGG-TTCCCCACG---GCAGCATTTTATGAACTGAAGTGCATAGACAC-TTCAAGGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGCATCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028715 204 + 4267968 ACCAGCACAG--AGGGACGTGCCTCTAAGAAGGGTGCACTCT--GGGGC-AGGGAAAGGACATAGAT--GAGAGTTTGAA-TGCTTTCTTGATGA------GTGCTTAATTAGATTGG-TTCCCCACG---GCAGCACTTTATGAACTGAAGTGCATAGACAC-TTCAAGGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGCATCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011040 194 - 2193130 ACCAGCACAG--AGGGACGTGCCTCTAAGAAGGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-C-CCTTCTTGCTAA------ATGCTTAATTAGATTGG-TTCCCCAAG---GCAGCATTTTATGAAC------------ACAC-TTCAAGGGTCT-ATGAGGGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-CGCATCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082009 207 - 77216781 ACCGTCACAG--AGGGACGTGCCTCTAAGAACGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATTAGATTGG-TTCCCCAAG---GCAGCATTTCATGAATGGAAGTGCATAGACAT-TTCAGCGGGCT-ATGAGAGGGAAAATATTCCACGGGTGAGAGATGGAG-AGAGG-AGCATGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994269 207 - 80997621 ACCGTCACAG--AGGGACGTGCCTCTAAGAACGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATTAGATTGG-TTCCCCAAG---GCAGCATTTCATGAATGGAAGTGCATAGACAT-TTCAGCGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGCATGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2051972 207 + 10377808 ACCGTCACAG--AGGGACGTGCCTCTAAGAACGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATTAGATTGG-TTCCCCAAG---GCAGCATTTCATGAATGGAAGTGCATAGACAT-TTCAGCGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGCATCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1936933 207 - 8458610 AGCGTCACAG--AGGGACGTGCCTCTAAGAAGGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATCAGATTGG-TTCCCCAAG---GCAGCATTTCATGAACGGAAGTGCATAGACAC-TTCAGCGGGCT-ATGCGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGAATCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892526 207 + 75148670 ACCGTCACAG--AGGGACGTGCCTCTAAGAAGGGTGCATTCTG-GGGGC-AGGGAAAGGACTTAGATGAAAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATTAGATTGG-TTCCCCAAG---GCAGCATTTCATGAACGGAAGTGCATAGACAC-TTCAGTGGGCT-ATGCGAGGGAAAATATTCTACGGGTGAGAGATGGAG-AGAGG-AGCATCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2121967 207 + 4244037 ACCGTCACAG--AGGGACGTGCCTCTAAGAAGGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATCAGATTGG-TTCCCCAAG---GCAGCATTTCATGAACGGAAGTGCATAGACAC-TTCAGCGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGG-AGCATCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144329 207 + 4569836 ACCGTCACAG--AGGGATGTGCCTCTAAGAAGGGTGCATTCTG-GGGGC-AGGGAAAGGACATAGATGAGAGAGTTTCAA-CCCGTTCTTGATAA------ATGCTTAATTAGATTGG-TTCCCCAAG---GCAGCATTTCATGAACTGAAGTGCAGAGACAC-TTCAGTGGGCT-ATGAGAGGGAAAATATTCCGTGGGTGAGAGATGGAG-AGAGG-AACATCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117092 207 - 159171411 ACCAGCACAG--AAGGACGTTCTTGTAAGAAGGGTGCACTCTG-GGGGC-AGAGAGAGGGCATGGATGACAGAGTTTCGG-TCCATTCTCGATAA------ATGCTCAATTAGATTGG-TTCTCCATG---GCAGCATATCATGAACCAAAGTGCAGAGACAC-TTCAGAGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGA-AGCATCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827757 209 + 3513951 ATCAGCACAG---AGGATGTTCTTGTAAGAATGGTGCACTCTG-GGGTC-AGGGAGAGGGCATGGATGACAGAGTTTTGG-TCCATTCTTGATAA------ATGCTCAATTAGATTGG-TTCTCCAGGGCAGCAGCATATCATGAACCGAAGTGCAGAGACAC-TTCAGAGGGCT-ATGAGAGGGAAAGTATTCCACGGGTGAGAGATGGAG-AGAGA-AGCATCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876091 207 + 1920343 ACCAGCACAG--AGGGACGTTCTTGTAAGAAGGGTGCACTCTG-GGGGC-AGGGAGAGGGCATGGATGGCAGAGTTTTGA-TCCATTCTCGATAA------ATGCTCAATTAGATTGG-CTCTCCACG---GCAGCATATCATGAACCGAAGTGCAGAGAAAC-TTCAGAGGGCT-ATGAGGGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGA-AGCATCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6992937 207 - 7032639 ACCAGCACAG--AGGGACGTTCTTGTAAGAAGGGTGCACTCTG-GGGGC-AGGGGGAGGGCATGGATGACAGAGTTTCCA-TCCATTCTTGATAA------ATGCTCAATTAGATTGG-TTCTCCATG---GCAGCATATCATGAACCAAAGTGCAGAGACAC-TTCAGAGGGCT-ATGAGAGGGAAAATATTCCATGGGTGAGAGATGGAG-AGAGA-AACATCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22811345 192 + 28711273 ACCAACACA--------------------AATGGTGCACTCTGCGGGGT-GGGAAGAGGGCTTAGCTCACAGAGTTTCAAGTCCATTCTCAATAA------ATGCTCCA-CAGATGGA-TTCTCCAAG---CCAGCACATCTTGGACTGAAAAGAAAATTCCC-TCAGGTTGGCTGGTGGAAAGGATGATATTCTAAGGGTGGGAGATGGGGTGGGGA-AGTGTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22073883 214 - 122082543 CCCCACCCAG--AGTGAAATCTTTCTGAGAAAGGCATTCTATG-GGGGCGAGGGAGATGAGAAAGATGAAGGCATCAAGA-C-CGCTCTTGGCCACACTCCATGTCCAATTAG-CAGC-AACTCCACA---GCATCTTATCTTAAGTGGCAATGCGGAGACATGGGCGGTGGACAGGTGGGAGGCAAGAGAGTCCTTGGCTGGG-GATGGGT-TGAGGAAGTACCC i mm10.chr11 C 0 C 0 s dasNov3.JH570468 409448 208 - 852752 ACCAACACAGGGAAGGACATTGCTCCGAGAAGTGTGGACTCTG-TGGCT-GGGGAGAGGACACAGCTGGGAGAGTTTTAAGTCTGTTCTTGATAA------ATGCCTAATTACATTGGTTTCCTCAAG---GCACCATGTCTTGAACTGAAATGCAGAGAAAC-AGC--TGGGCT---GGTGGGAGAGATATTCCATGGGTGGGAGATGAGGTGGGGA-AGTAACG i dasNov3.JH570468 I 9 C 0 e proCoq1.NW_012135969v1 2996027 499 + 8555354 I e micMur3.chr16 35907907 956 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=852181.000000 s hg38.chr17_GL383564v2_alt 99870 58 + 133151 AGAATTTTGCAACTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT s panTro5.chr17 16289028 58 + 83181570 AGAATTTTGCAACTGAGATTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193890 58 + 83442489 AGAATTTTGCAACTGAGATTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028919 58 + 4267968 AGAATTTTGCAACTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011234 58 - 2193130 AGAATTTTGCAACTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082216 58 - 77216781 GGAATTGTGCAGCTGAGCTTTGGTGAGCTCT------------------------GTTTCACATGTGGATGTC----AAGGATTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994476 58 - 80997621 GGAATTGTGCAGCTGAGCTTTGGTGAGCTCT------------------------GTTTCACATGTGGATGTC----AAGGATTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052179 58 + 10377808 GGAATTGTGCAGCTGAGCTTTGGTGAGCTCT------------------------GTTTCATATGTGGATGTC----AAGGATTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937140 58 - 8458610 GGAATTGTGCAGCTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892733 58 + 75148670 GGAATTGTGCAGCTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122174 58 + 4244037 GGAATTGTGCAGCTGAGCTTTGGTGAGCTCT------------------------GTTTCACATGTGGATGTC----AAGGATTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144536 58 + 4569836 GGAATTGTGCAACTGAGTTTTGGTGAGCTCT------------------------GTTTCCCATTTGGATGTC----AAGGATTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117299 58 - 159171411 AGAGTTTTGCAACGGAGCTTTAGTGAGCTCT------------------------GTTTCACATTCGGATGTC----AAGGATTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1827966 58 + 3513951 AGAGTTTTGCAACTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTC i saiBol1.JH378271 C 0 I 264 s cebCap1.NW_016107730v1 1876298 58 + 1920343 AGAGTTTTGCAACTCAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i cebCap1.NW_016107730v1 C 0 I 259 s aotNan1.NW_018502359v1 6993144 58 - 7032639 AGAGTTTTGCAACTGAGCTTTAGTGAGCTCT------------------------GTTTCACATTTGGATGTC----AAGGATTTT i aotNan1.NW_018502359v1 C 0 I 252 s micMur3.chr16 35908863 58 - 65901067 AGAATCTTGCAGCTGAGATGTGGTGAGCTCT------------------------GTTGGACATTTGGATGTC----AAGGATTTT i micMur3.chr16 I 956 C 0 s proCoq1.NW_012135969v1 2996526 58 + 8555354 AGAATCTTGCAGCTGAGATGTGGTGAGCTCT------------------------GCTGGACATTTGGATGTG----AAGGGTTTT i proCoq1.NW_012135969v1 I 499 C 0 s otoGar3.GL873537 22811537 58 + 28711273 GGAATTTTGCAAATGGGATATGGTGAGCTCT------------------------GTTTGCCATTTGGATGTC----ACGGATTTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22074097 62 - 122082543 AGAATCTGGGCAATAAGATTTGGTGAGTTTC------------------------ACTCAGCATTTGGATGCAAGGGAAGGGTTTT i mm10.chr11 C 0 C 0 s dasNov3.JH570468 409656 82 - 852752 AGAATCTTAAAGCTGAGATTTGATGGGCTGTGCACTAATAGGATTGGCCCCTGGGGTTTGACATTTGGGTATC----AAGGAATTT i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21424833 4 + 61074082 I a score=218455.000000 s hg38.chr17_GL383564v2_alt 99928 15 + 133151 AGAAAAGCAGATGTC s panTro5.chr17 16289086 15 + 83181570 AGAAAAGCAGATGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193948 15 + 83442489 AGAAAAGCAGATGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028977 15 + 4267968 AGAAAAGCAGATGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011292 15 - 2193130 AGAAAAGCCGATGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082274 15 - 77216781 AGAAAAGCCGGTGTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994534 15 - 80997621 AGAAAAGCCGGTGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052237 15 + 10377808 AGAAAAGCCGGTGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937198 15 - 8458610 AGAAAAGCCGGTGTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892791 15 + 75148670 AGAAAAGCCGGTGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122232 15 + 4244037 AGAAAAGCCGGTGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144594 15 + 4569836 AGAAAAGCTGGTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117357 15 - 159171411 AGAAAAACAGATGtc i calJac3.chr5 C 0 I 564 s saiBol1.JH378271 1828288 15 + 3513951 AGAAAAGCAGATGTC i saiBol1.JH378271 I 264 C 0 s cebCap1.NW_016107730v1 1876615 15 + 1920343 AGAAAAGCAGATGTC i cebCap1.NW_016107730v1 I 259 C 0 s aotNan1.NW_018502359v1 6993454 15 - 7032639 AGAAAAGCAGATGTC i aotNan1.NW_018502359v1 I 252 C 0 s micMur3.chr16 35908921 15 - 65901067 AGAAAGGTGGATGTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2996584 15 + 8555354 AGAAAGGCAGATGTC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22811595 15 + 28711273 AGAAGGGCAGATGTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22074159 15 - 122082543 TAAAAAGTGAACGAG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 409738 15 - 852752 AGAAAAGTGAATGTC i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21424833 4 + 61074082 I a score=51224.000000 s hg38.chr17_GL383564v2_alt 99943 3 + 133151 TGC s panTro5.chr17 16289101 3 + 83181570 TGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193963 3 + 83442489 TGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028992 3 + 4267968 TGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011307 3 - 2193130 TGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082289 3 - 77216781 TGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994549 3 - 80997621 TGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052252 3 + 10377808 TGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937213 3 - 8458610 TGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892806 3 + 75148670 TGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122247 3 + 4244037 TGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144609 3 + 4569836 TGC i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1828303 3 + 3513951 TGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876630 3 + 1920343 TGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993469 3 - 7032639 TGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35908936 3 - 65901067 TGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2996599 3 + 8555354 TGC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22811610 3 + 28711273 TGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22074174 3 - 122082543 TGC i mm10.chr11 C 0 I 638 s dasNov3.JH570468 409753 3 - 852752 TGA i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21424833 4 + 61074082 I e calJac3.chr5 46117372 564 - 159171411 I a score=32661.000000 s hg38.chr17_GL383564v2_alt 99946 2 + 133151 CT s panTro5.chr17 16289104 2 + 83181570 CT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193966 2 + 83442489 CT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028995 2 + 4267968 CT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011310 2 - 2193130 CT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082292 2 - 77216781 CT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994552 2 - 80997621 CT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052255 2 + 10377808 CT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937216 2 - 8458610 CT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892809 2 + 75148670 CT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122250 2 + 4244037 CT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144612 2 + 4569836 CT i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1828306 2 + 3513951 CT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876633 2 + 1920343 CT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993472 2 - 7032639 CT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35908939 2 - 65901067 CT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2996602 2 + 8555354 CT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22811613 2 + 28711273 CT i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 409756 2 - 852752 CT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e canFam3.chr9 21424833 4 + 61074082 I e calJac3.chr5 46117372 564 - 159171411 I a score=381548.000000 s hg38.chr17_GL383564v2_alt 99948 27 + 133151 CACTGCTGTCTGTTTAACTGAAGG-TTT s panTro5.chr17 16289106 27 + 83181570 CACTGCTGTCCGTTTAACTGAAGG-TTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193968 27 + 83442489 CACTGCTGTCCGTTTAACTGAAGG-TTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4028997 27 + 4267968 CACTGCTGTCCGTTTAACTGAAGG-TTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011312 28 - 2193130 TACTGCTGTCCGTTTAACTGAGGGCTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082294 27 - 77216781 CACTGCTGTCCGTTTAACTGAAGG-TTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994554 27 - 80997621 CACTGCTGTCCGTTTAACTGAAGG-TTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052257 27 + 10377808 CACTGCTGTCCGTTTAACTGAAGG-TTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937218 27 - 8458610 CACTGCTGTCCATTTAACTGAAGG-TTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892811 27 + 75148670 CACTGCTATCCGTTTAACTGAAGG-TTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122252 27 + 4244037 CACTGCTGTCCGTTTAACTGAAGG-TTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144614 27 + 4569836 CACTGCTGTCCATTTAACTGAAGG-TTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117936 27 - 159171411 cACTGCTGTGCATTTAACTGAGGG-TTC i calJac3.chr5 I 564 C 0 s saiBol1.JH378271 1828308 27 + 3513951 CACTGCTGTGCGTTTAACTGAGGG-TTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876635 27 + 1920343 CACTGCTGTGTGTTTAACTGAGGG-TTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993474 27 - 7032639 CACTGCTGTGCGTTTAACTGAGGG-TTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35908941 27 - 65901067 TATTGCTCTGTGTTTAACTGAGGG-TTT i micMur3.chr16 C 0 I 317 s proCoq1.NW_012135969v1 2996604 27 + 8555354 TACTGCTCTGCGTTTAACTGAGGG-TTT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22811615 27 + 28711273 TCCTGCTCTGTGTTTAACTGAGGG-TTT i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 409758 27 - 852752 TATTGCTATGCCTTTAACCAAGGC-TTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e canFam3.chr9 21424833 4 + 61074082 I a score=307864.000000 s hg38.chr17_GL383564v2_alt 99975 25 + 133151 ACACTTGTGCTCTGAGATTGTTACT s panTro5.chr17 16289133 25 + 83181570 ACACTTGTGCTCTGAGATTGTTACT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16193995 25 + 83442489 ACACTTGTGCTCTGAGATTGTTACT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029024 25 + 4267968 ATACTTGTGCTCTGAGATTGTTACT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011340 25 - 2193130 ACACTTGTGCCCTGAGATTGTTACT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082321 25 - 77216781 ACACTTGTGCTCTAAGATTGTTACT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994581 25 - 80997621 ACACTTGTGCTCTAAGATTGTTACT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052284 25 + 10377808 ACACTTGTGCTCTAAGATTGTTACT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937245 25 - 8458610 ACACTTGTGCTCTAAGATTGTTACT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892838 25 + 75148670 ACACTTGTGCTCTAAGATTGTTACT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122279 25 + 4244037 ACACTTGTGCTCTAAGATTGTTACT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144641 25 + 4569836 ACACTTGTGCTCTAAGATTGTTACT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117963 25 - 159171411 ATACTTGTGCTTTGAGATTATTACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828335 25 + 3513951 ATACTTGTGCTTTGAGATTATTACT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876662 25 + 1920343 ATGCTTGTGCTTTGAGATTATTACT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993501 25 - 7032639 ATACTTGTGCTTTGAGATTATTACT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2996631 25 + 8555354 GCATTCCTGCCCTGAGATTGGTACT i proCoq1.NW_012135969v1 C 0 I 208 s otoGar3.GL873537 22811642 25 + 28711273 GCATTCCTGCCCTGAGATTGGTACT i otoGar3.GL873537 C 0 I 2 s dasNov3.JH570468 409785 25 - 852752 GCCTTTCTGTTATGAGGTTGGTAAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e micMur3.chr16 35908968 317 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=512440.000000 s hg38.chr17_GL383564v2_alt 100000 55 + 133151 AAAACAGAaagag--------------------gaaggagaagaagaggaggacgagggggaaggagagagaatg s panTro5.chr17 16289158 55 + 83181570 AAAACAGAAAgag--------------------gaaggagaagaagaggaggacgagggggaaggagggagaatg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194020 55 + 83442489 AAAACAGAAAgag--------------------gaaggagaagaagaggaggacgagggggaaggagggagaatg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029049 55 + 4267968 AAAACAGAAAgag--------------------gaaggagaagaagaggaggacgagggggaaggagggagaatg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011365 55 - 2193130 AAAACAGAAAGGg--------------------gaaggagaagaagaggaggacgagtgggaaggagggagaatg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082346 55 - 77216781 Aaaacagagagag--------------------aaaggagacaaagaggagcacgaggaggaaggagggagaatg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994606 55 - 80997621 Aaaacagagagag--------------------aaaggagacaaagaggagcacgaggaggaaggagggagaatg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052309 55 + 10377808 AAAACAGAGAGAG--------------------AAAGGAGACAAAgaggagcacgaggaggaaggagggagaatg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937270 55 - 8458610 Aaaacagagagag--------------------aaaggagacaaagaggagcacgaggaggaaggagggagagtg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892863 55 + 75148670 AAAACAGAGAAAG--------------------AAAGGAGACAAAgaggagcacgaggaggaaggagggagaatg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122304 55 + 4244037 AAAACAGAGAGAG--------------------AAAGGAGACAAAgaggagcacgaggaggagggagggggaatg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144666 55 + 4569836 AAAACAGAGAGAG--------------------AAAGGAGACAAAgaggagcacgaggaggaaggagggagaatg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46117988 51 - 159171411 AAaagagaaagag--------------------gaaggag---aagaggaggataagggggaaggag-gagaatg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828360 51 + 3513951 AAAAGAGAGAGag--------------------gaaggag---aagaggagggagagggggaaggag-gagaatg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876687 51 + 1920343 AAAAgagaaagag--------------------gaaggag---aagaggaggacgagggggaaggag-gagaatg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993526 48 - 7032639 AAaagagaaagag--------------------gaagaag---aagagga---cgaggaggaaggag-gagaatg i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22811669 75 + 28711273 AAGATGGAAATGGGGGGTGGGGGGAAGgaaagagaaggaaaggagaaggaggaagagagggaAGTAGGCAGAAAG i otoGar3.GL873537 I 2 I 426 s dasNov3.JH570468 409810 53 - 852752 --AAAACAAAGAG--------------------AAAGGAAGAGGGGGTGGggaaggaaggaaggaaggaaggaag i dasNov3.JH570468 C 0 I 2 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2996656 208 + 8555354 I e micMur3.chr16 35908968 317 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=503332.000000 s hg38.chr17_GL383564v2_alt 100055 62 + 133151 agtg----aggaaggaaggaagaaaggcagggaggaa--------------------------gaaaggagg--agaagaagaaaaaAACAAAA s panTro5.chr17 16289213 62 + 83181570 agtg----aggaaggaaggaagaaaggcagggaggaa--------------------------gaaaggagg--agaagaagaaaAAAACAAAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194075 62 + 83442489 agtg----aggaaggaaggaagagaggcagggaggaa--------------------------gaaaggagg--agaagaagaaaAAAACAAAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029104 66 + 4267968 agtgaggaaggaaggaaggaagaaaggcagggaggaa--------------------------gaaaggagg--agaagaagaaaAAAACAAAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011420 62 - 2193130 actg----aggaaggaaggaagaaaggcagggaggaa--------------------------gaaaggagg--agaagaagaaaaaAACAAAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082401 55 - 77216781 agtg--------aggaaggaagaaaggcagggaggaa--------------------------gaaaggagg-----aggagaaaaaaacaaaC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994661 55 - 80997621 agtg--------aggaaggaagaaaggcagggaggaa--------------------------gaaaggagg-----aggagaaaaaaacaaaC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052364 55 + 10377808 agtg--------aggaaggaagaaaggcagggaggaa--------------------------gaaaggagg-----aggagAAAAAAACAAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937325 55 - 8458610 agtg--------aggaaggaagaaaggcaaggagaaa--------------------------gaaaggagg-----aggagaaaaaaacaaaC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892918 54 + 75148670 agtg--------agtaaggaagaaaggcagggaggaa--------------------------gaaaggagg-----aggagAAAAAAAC-AAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122359 55 + 4244037 agtg--------aggaaggaagaaaggcagggaggaa--------------------------gaaaggagg-----aggagAAAAAAACAAAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144721 55 + 4569836 agtg--------aggaaggaagaaaggcagggaggaa--------------------------gaaaggagg-----aggagAAAAAAACAAAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118039 55 - 159171411 agTG----aggaaggaaggaagaa--------aggca--------------------------ggaggaagg-agggaGAAGAATAAAGCAAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828411 63 + 3513951 agtg----aggaaggaaggaaggaagaaaggcaggga--------------------------ggaagaagg-gaggaGAAGAATAAAGCAAAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876738 54 + 1920343 agtg----aggaaggaagaaaggg--------aggaa--------------------------gaagggagg--aggagaagAATAAAGCAAAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993574 61 - 7032639 agtg----aggaaggaaggaagaaaggcagggaggaa--------------------------ggagggagg--agaagaagAATAAAGCAAA- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22812170 63 + 28711273 aggg----aagaaggaagtgaggaaggaaagaaggga--------------------------ggaaggaagggaggagggaaAGAAAATAAA- i otoGar3.GL873537 I 426 I 6 s dasNov3.JH570468 409865 88 - 852752 agga----aggaaggaaggaaggaaggaaggaaggaaaacaggcaggcagaggaagtgagggtggaaggaag--agaggaaAAAGAAAAAAAAA i dasNov3.JH570468 I 2 I 511 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2996656 208 + 8555354 I e micMur3.chr16 35908968 317 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=6392.000000 s hg38.chr17_GL383564v2_alt 100117 1 + 133151 T s panTro5.chr17 16289275 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194137 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029170 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011482 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082456 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994716 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052419 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937380 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892972 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122414 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144776 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118094 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828474 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876792 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2996656 208 + 8555354 I e micMur3.chr16 35908968 317 - 65901067 I e dasNov3.JH570468 409953 511 - 852752 I e canFam3.chr9 21424833 4 + 61074082 I e otoGar3.GL873537 22812233 6 + 28711273 I e aotNan1.NW_018502359v1 6993635 0 - 7032639 C a score=386467.000000 s hg38.chr17_GL383564v2_alt 100118 35 + 133151 G-TCTATTGCAGTTGTCTTAGGCATTTAGTGAATTG s panTro5.chr17 16289276 35 + 83181570 G-TCTATTGCAGTTGTCTTAGGCATTTAGTGAATTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194138 35 + 83442489 G-TCTATTGCAGTTGTCTTAGGCATTTAGTGAATTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029171 35 + 4267968 G-TCTATTGCAGTTGTCTTAGGCATTTAGTGAATTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011483 35 - 2193130 G-TCTGTTGTAGTTGTCTTAGGCATTTAGTAAATTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082457 36 - 77216781 GTTCTATTGCAGTTGTCTTAGGCGTTTAGTAAATTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994717 36 - 80997621 GTTCTATTGCAGTTGTCTTAGGCGTTTAGTAAATTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052420 36 + 10377808 GTTCTATTGCAGTTGTCTTAGGCGTTTAGTAAATTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937381 35 - 8458610 G-TCTATTGCAGTTGTCTTAGGCGTTTAGTAAATTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64892973 35 + 75148670 G-TCTATTGCAGTTGTCTTAGGCATTTAGTAAGTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122415 36 + 4244037 GTTCTATTGCAGTTGTCTTAGGCGTTTAGTAAATTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144777 35 + 4569836 G-TCTATTGCAGTTGTCTTAGGCATTTAGTAAATTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118095 35 - 159171411 A-TCTATTGCAGTTGTCTTAGGCATTTAGTAAATTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828475 35 + 3513951 A-TCTATTGCAGTTGTCTGAGGCATTCAGTAAATTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876793 35 + 1920343 A-TCTATTGCAGTTGTCTTAGGCATTCAGCAAATTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993635 33 - 7032639 ---CTATTGCAGTTGTCTTAGGCATTTAGTAAATTG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2996864 35 + 8555354 -GTCTATTGCAGTTGTCCTAGGCAGTTAGTGAATTG i proCoq1.NW_012135969v1 I 208 C 0 s otoGar3.GL873537 22812239 25 + 28711273 -ATCTATTGCAGCTGTC----------AGTGAATTG i otoGar3.GL873537 I 6 C 0 e mm10.chr11 22074177 638 - 122082543 I e micMur3.chr16 35908968 317 - 65901067 I e dasNov3.JH570468 409953 511 - 852752 I e canFam3.chr9 21424833 4 + 61074082 I a score=46026.000000 s hg38.chr17_GL383564v2_alt 100153 3 + 133151 TCA s panTro5.chr17 16289311 3 + 83181570 TCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194173 3 + 83442489 TCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029206 3 + 4267968 TCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011518 3 - 2193130 TCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082493 3 - 77216781 TCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994753 3 - 80997621 TCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052456 3 + 10377808 TCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937416 3 - 8458610 TCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893008 3 + 75148670 TCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122451 3 + 4244037 TCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144812 3 + 4569836 TCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118130 3 - 159171411 TCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828510 3 + 3513951 TCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876828 3 + 1920343 TCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993668 3 - 7032639 TCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 2996899 3 + 8555354 TCA i proCoq1.NW_012135969v1 C 0 I 28 s otoGar3.GL873537 22812264 3 + 28711273 CCA i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 410464 3 - 852752 TCA i dasNov3.JH570468 I 511 C 0 e mm10.chr11 22074177 638 - 122082543 I e micMur3.chr16 35908968 317 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=263074.000000 s hg38.chr17_GL383564v2_alt 100156 31 + 133151 ----G-TTTTTTTGCTTGGTCGTTTTTTGTGGCCCT s panTro5.chr17 16289314 31 + 83181570 ----G-TTTTTTTGCTTGGTCATTGTTTGTGACCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194176 31 + 83442489 ----G-TTTTTTTGCTTGGTCATTGTTTGTGACCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029209 32 + 4267968 ----GTTTTTTTTGCTTGGTCGTTGTTTGTGGCCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011521 31 - 2193130 ----G-TTCTTTTGCTTGGTCGTTGTTTGTGGCCCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082496 31 - 77216781 ----G-TTTTTTTACTTGGTCGTTGTTTGCCGCCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994756 31 - 80997621 ----G-TTTTTTTACTTGGTCGTTGTTTGCCGCCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052459 31 + 10377808 ----G-TTTTTTTACTTGGTCGTTGTTTGCCGCCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937419 31 - 8458610 ----G-TTTTTTTGCTTGGTCGTTGTTTGCCGCCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893011 31 + 75148670 ----G-TTTTTTTGCTTGGTCGTTGTTTGCTGCCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122454 31 + 4244037 ----G-TTTTTTTACTTGGTCGTTGTTTGCCGCCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144815 31 + 4569836 ----G-TTTTTTTGCTTGGTCATTGTTTGCCGCCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118133 30 - 159171411 ----G-CTT-TTTGCTTGGTTGTTGTTTGCTGCCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828513 30 + 3513951 ----G-CTT-CTTGCTTGGTTGCTGTTTGCCGCCCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876831 30 + 1920343 ----G-CTT-TTCGCTTGGTTGTTGTTTGCCGCCCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993671 29 - 7032639 ----G-CTT--TTGCTTGGTTATTGTTTGCTGCCCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22812267 27 + 28711273 ------CTATGTCACTTGGTGTTCACTTGTACC--- i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 410467 35 - 852752 GTTTA-CTTGATCACTTGGTCTTTGTTCATGGCTCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2996902 28 + 8555354 I e micMur3.chr16 35908968 317 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=223436.000000 s hg38.chr17_GL383564v2_alt 100187 17 + 133151 GTTTCTGTCACTACCTT s panTro5.chr17 16289345 17 + 83181570 GTTTCTGTCACTACCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194207 17 + 83442489 GTTTCTGTCACTACCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029241 17 + 4267968 GTTTCTGTCACTACCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011552 17 - 2193130 GTTTCTGTCACTACCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082527 17 - 77216781 GTTTCTGTCACTACCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994787 17 - 80997621 GTTTCTGTCACTACCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052490 17 + 10377808 GTTTCTGTCACTACCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937450 17 - 8458610 GTTTCTGTCACTACCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893042 17 + 75148670 GTTTCTGTCACTACCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122485 17 + 4244037 GTTTCTGTCACTACCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144846 17 + 4569836 GTTTCTGTCACTACCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118163 17 - 159171411 ATTTCTGTCATTCCCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828543 17 + 3513951 ATTTCTGCCATTCCCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876861 17 + 1920343 ATTTCTGCCATTCCCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993700 17 - 7032639 ATTTCTGTCATTCCCTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35909285 17 - 65901067 GTTTCTGCCACTCCTTT i micMur3.chr16 I 317 C 0 s proCoq1.NW_012135969v1 2996930 17 + 8555354 GTTTCTGCCACTCCTTT i proCoq1.NW_012135969v1 I 28 C 0 s otoGar3.GL873537 22812294 12 + 28711273 ATTTCTGCCACG----- i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 410502 17 - 852752 ATTTCTACCACCTTCTT i dasNov3.JH570468 C 0 I 418 e mm10.chr11 22074177 638 - 122082543 I e canFam3.chr9 21424833 4 + 61074082 I a score=1127551.000000 s hg38.chr17_GL383564v2_alt 100204 83 + 133151 GCCTTTGTCTCC-ATTTCTAACCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC s panTro5.chr17 16289362 83 + 83181570 GCCTTTGTCTCC-ATTTCTAACCCCATGTTCACCCCTTCGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194224 83 + 83442489 GCCTTTGTCTCC-ATTTCTAACCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029258 82 + 4267968 GCC-TTGTCTCC-ATTTCTAACCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011569 83 - 2193130 GCCATTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082544 83 - 77216781 GCCTTTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994804 83 - 80997621 GCCTTTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052507 83 + 10377808 GCCTTTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937467 83 - 8458610 GCCTTTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATGCAACTTTTCTGGTTCTGGCCTTGGGTGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893059 83 + 75148670 GCCTTTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122502 83 + 4244037 GCCTTTGTCTCC-ATTTCTAGCCCCATGTTCACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144863 83 + 4569836 GCCTTTGTCTCC-ATTTCTAGCCCCACGTTCATCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118180 83 - 159171411 GTCTTTGTCTCC-ATTTCTAGCCCCATGTTTACCCCTTGGATTTAATGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828560 83 + 3513951 GCCCTCGTCTCC-ATTTCTAGCCCCATGTTTACTGCTTGGATTTAATGGTCGATCCAGCTTCTCTGGTTCCGGCCTTGGGTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876878 83 + 1920343 GCCTTTGTCTCC-TTTTCTAGCCCCATGTTTACCCCTTGGATTTAGTGGTAGATCCAGCTTTTCTGGTTCTGGCCTTGGGTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993717 55 - 7032639 GCCTTTGTCTCC-ATTTCTAGCCCTATGTTTACCCCTTGGATTTAATGGTAGATCC---------------------------- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35909302 83 - 65901067 GCCTTTGTCTCC-ACCTCTAGTCCCATGTTTGCCCCTTGGATTTAAGGGTGGTTCCACTTTTTCAGGTTCTGGCCTTGGGTGCC i micMur3.chr16 C 0 I 232 s proCoq1.NW_012135969v1 2996947 83 + 8555354 GCCTTTGTCTCC-ACTTCTAGTCCCATGTTTGCCCCTTGGATTTAATGGTGGTTCCACCATTTCAGGGTCTGGCCTTGGGTGCC i proCoq1.NW_012135969v1 C 0 I 209 s otoGar3.GL873537 22812306 50 + 28711273 ----------------TCTAGTCCCAAGTTTGCCTCTTGAATTTAATGGT------------------TCTGGTCTTTGCTGTC i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 410937 84 - 852752 GCTCCTGTCTCCTAATTCTAGTTCCAAGTTAGCCCCTTGGATTTAATGGTAGGTCCAACTTTTTTAGTTCTACCCGTTGTTGCC i dasNov3.JH570468 I 418 C 0 e mm10.chr11 22074177 638 - 122082543 I e canFam3.chr9 21424833 4 + 61074082 I a score=1213380.000000 s hg38.chr17_GL383564v2_alt 100287 139 + 133151 TCCAGGGCATTATTTG-CCCCTATTCTCTCTAGCTTTTCCTAATTCTGGCCTTTGATGCCTCCTGATATATG-CCCCCATTCTCTCTAGCTTTTTCTGCTCTTGGCC-TCTCAGCCAGGTCTGCAATAACCCCTGTGC-------------ACCA s panTro5.chr17 16289445 139 + 83181570 TCCAGGGCATTATTTG-CCCCTATTCTCTCTAGCTTTTCCTAATTCTGGCCTTTGATGCCTCCTGATATATG-CCCCCATTCTCTCTAGCTTTCTCTGCTCCTGGCC-TCTCAGCCAGGTCTGCAATAACCCCTGTGC-------------ACCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194307 139 + 83442489 TCCAGGGCATTATTTG-CCCCTATTCTCTCTAGCTTTTCCTAATTCTGGCCTTTGATGCCTCCTGATATATG-CCCCCATTCTCTCTAGCTTTCTCTGCTCCTGGCC-TCTCAGCCAGGTCTGCAATAACCCCTGTGC-------------ACCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029340 140 + 4267968 TCCAGAGCATTATTTGCCCCCTATTCTCTCTAGCTTTTCCTAATTCTGGCCTTTGATGCCTCCTGATATATG-CCCCCATTCTCTCCAGCTTTTTCTGTTCTTGGCC-TCTCAGCCAGGTCTGCAATAACCCCTGTGC-------------ACTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011652 139 - 2193130 TCCAGGGCATTATTTG-CCCCTATTCTCTCTAGCTTTTCCTAATTCTGGCCTTTGATGCCTCCTGATATGTG-CCCCCATTCTCTCTAGCTTTTTCTGCTCTTGGCC-TCTCAGCCAGGTCTGCAGTAACCCCTGTGC-------------ACCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082627 140 - 77216781 TCCAGGGCATTATTGG-CCCCTATTCTCTCTAACTTTTCCTGGTTCTGGCCTTTGGTGCCTCCTGATATCTGCCCCCCATTCTCTCTAGCTTTTTCTGCTCTTGACC-TCTTAACCAGGTCTGCAGTAACCGCTGTGC-------------ACCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27994887 140 - 80997621 TCCAGGGCATTATTGG-CCCCTATTCTCTCTAACTTTTCCTGGTTCTGGCCTTTGGTGCCTCCTGATATCTGCCCCCCATTCTCTCTAGCTTTTTCTGCTCTTGACC-TCTTAACCAGGTCTGCAGTAACCGCTGTGC-------------ACCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052590 140 + 10377808 TCCAGGGCATTATTGG-CCCCTATTCTCTCTAACTTTTCCTGGTTCTGGCCTTTGGTGCCTCCTGATATCTGCCCCCCATTCTCTCTAGCTTTTTCTGCTCTTGACC-TCTTAACCAGGTCTGCAGTAACCGCTGTGC-------------ACCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937550 140 - 8458610 TCCAGGGCATTATTGG-CCCCTATTCTCTCTAACTTTTCCTGGTTCTGGCCTTTGGTGCCTCCTGATATCTGCCCCCCATTCTCTCTAGCTTTTTCTGCTCTTGACC-TCTTAACCAGGTCTGCAGTAACCGCTGTGC-------------ACCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893142 140 + 75148670 TCCAGGGCATTATTGG-CCCCTATTCTCTCTAACTTTTCCTGGTTCTGACCTTTGGTGCCTCCTGATATCTGCCCCCCATTCTCTCTAGCTTTTTCTGCTCTTGACC-TCTTAACCAGGTCTGCAGTAACCGCTGTGC-------------ACCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122585 140 + 4244037 TCCAGGGCATTATTGG-CCCCTATTCTCTCTAACTTTTCCTGATTCTGGCCTTTGGTGCCTCCTGATATCTGCCCCCCATTCTCTCTAGCTTTTTCTGCTCTTGACC-TCTTAACCAGGTCTGCAGTAACCGCTGTGC-------------ACCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2144946 139 + 4569836 TCCAGGGCATTATTGG-TCCCTATTCTCTCTAACTTTTCCTGGTTCTGGCCCTTGGTGCCTCCTGATATCTG-CCCCCATTCTCTTTAGCTTTTTCTGCTCTTGATC-TCTTAACTAGGTCTGCAGTAACTGCTGTAC-------------ACCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118263 152 - 159171411 TCTAGGACATACTTTG-CCCCTATTCTCTCTAGCTTTTCCTAGTTCCGGCCTTTGGTGCCTCCTGACATCTG-TCCCCATTCTCTCTAGCTTTTTCTGTTCTTGGTC-TCTCAGCCAGGTCTGTAGTAACCTACATGCAGGAAAGACTAGAACCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828643 152 + 3513951 TCTAGGACATAATTTG-CCCCTATTCTCTCTAGCTTTTCCTGGTTCTGGCCTTTGGTGTCTCCTGATTTCTG-TCCCTATTCTCTCTAGCTTTTTCTGTTCTTGGCC-TCTCAGCCAGGTCTGTAGTAACCTACGCGCTGGAAAGGCTAGAACCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1876961 150 + 1920343 TCCAGGACATAATTTG-CCCCTATTATCTCTAGCTTTTCCTGGTT-TGGCCTTT-GTGCCTCCTGATCTCTG-TCCCCATTCTCTCTAGCTTTTTCTGTTCTTGGCC-TCTCAACCAGGTCTGTAGTAACCTACATGCTGGAAAGCCTAGAACCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993772 122 - 7032639 -------------------------------AACTTTTTCTGGTTCTGGCCTTTGGTGCCTCCTGATATCTG-TCCCCATTCTCTCTAACTTTTTATGTTCTTGACC-TCTCAGCCAGGTCTGTAGTAACCCACGTGCTGGAAAGGCTAGAACCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22812356 62 + 28711273 -CCAGGACATTATTTG-CCTCTGTTC--------------------------------------------TG--------------TAGCTCTGCCTGCTCTTGGCC-TCCCAGCAGGG------------------C-------------ATC- i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 411021 68 - 852752 -CCTGGACATTATTTA-T----------------------------------------------------TG-----CATTCTC--CAGCTTTCCCAGCTCTTGGCCACCCCAGTCAGGTGGACAGTAG-------------------------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2997030 209 + 8555354 I e micMur3.chr16 35909385 232 - 65901067 I e canFam3.chr9 21424833 4 + 61074082 I a score=2009871.000000 s hg38.chr17_GL383564v2_alt 100426 175 + 133151 TTAATGGTttagagaaaggctctctctctgggtggatgcagcctgta-ggtgcctgatttggcaagcagca--------cataagctc-------gtctccatccc-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAACCCATGCAGCCAGCTCAAAA s panTro5.chr17 16289584 175 + 83181570 TTAATGGTttagagaaaggctctctctctgggtggatgcagcctgta-ggtgcctggtttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAACCCATGCAGCCAGCTCAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194446 175 + 83442489 TTAATGGTttaaagaaaggctctctctctgggtggatgcagcctgta-ggtgcctggtttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAACCCATGCAGCCAGCTCAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029480 175 + 4267968 TTAATGGTttggagaaaggctctctctctgggtggatgcagcctgta-ggtgcctgatttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgcATTGGAACAACCCATGCAGCCAGCTCAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011791 175 - 2193130 TTAATGGTttagagaaagtctctctctctgggtgaacgcagcctgta-ggtgcctggtttggcaagcagca--------cataagctg-------gtcttcatcct-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAACCCATGCAGCCAGCTCAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082767 175 - 77216781 TTAATGGTttagagaaaggctcgctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcggca--------cataagctg-------gtctccatccc-------accctgcggctgggtgctcttgtgcctggcacagctcatacctgcgtattgctgccttgGAACAATCCATGCAGCTGGCTCAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995027 175 - 80997621 TTAATGGTttagagaaaggctcgctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcggca--------cataagctg-------gtctccatccc-------accctgcggctgggtgctcttgtgcctggcacagctcatacctgcgtattgctgccttgGAACAATCCATGCAGCTGGCTCAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052730 175 + 10377808 TTAATGGTttagagaaaggctcgctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcggctgggtgctcttgtgcctggcacagctcatacCTGCGTATTGCTGCCTTGGAACAATCCATGCAGCTGGCTCAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937690 175 - 8458610 TTAATGGTttagagaaaggctccctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcggctgggtgctcttgtgcctggcacagctcatacctgcgtattgctgccttgGAACAATCCATACAGCTGGCTCAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893282 173 + 75148670 TTAATGGTttagagaaagg--ctctctctgggtggaagcagcctgca-ggtgcctggtttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcaactgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAATCCATGCAGCTGGCTCAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122725 175 + 4244037 TTAATGGTttagagaaaggctctctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcagca--------cataagctg-------gtctccatccc-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAATCCATACAGCTGGCTCAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145085 175 + 4569836 TTAATGGTttagagaaaggctctctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcagca--------cataagctg-------gtctctatccc-------accctgcagctgggtgctcttgtgcctggcacagctcatacctgcatattgctgccttgGAACAATCCATGCAGCTGACTCAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118415 182 - 159171411 TTGATggattagagaaaggttccctctctgggtggatgcagcctgca-ggtgcctagtttggcaagcagcacataagctcataagctg-------gtctccatccc-------a-cctgcagctgggtgctcttgcgcctggcacagctcatacctgcatattgctgccttgAAACAACCCATGCAGCCTGCTTAAAA i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1828795 174 + 3513951 TTGATGGTttagagaaaggctccctctctgggtggatgcagcctgca-ggtgcctggtttggcaagcagca--------cataggctg-------gtctccatccc-------a-cctgcagctgggtgctcttgcgcctggcacagctcatacctgcatattgccaccttgAAACAACCCATGCAGCCTGCTTAAAA i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1877111 174 + 1920343 TTAATGGTttagagaaaggctccctctctgggtggatgcagcctgca-ggtgcctggtttggcaatcagca--------cataagctg-------gtctccatccc-------a-cctgcagctgggtgctcttgtgcctggcatagctcatacctgcgtattgccaccttgAAACAACCCATGCAGCCTGCTTAAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6993894 172 - 7032639 TTGATGGTttagagaaaggctccctctctgggtggatgcagcctgca-ggtgcctgctttggcaagcagca--------cataagctg-------gtctccatccc-------a-cctgcagctgggtgctctt--gcctggcacagctcatacctgcatattgccgccttgAAACAACCCATGCAGCCTGCTTAAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22812418 119 + 28711273 ----------AGAGAAAGGTCCTCTCTGTGGATGGATGCAGCTTAGATGGTGACTTGCACAGCAGGCAGCT----------------G-------GTCT--------------ACCCCACAGCT-GGTGCTCTTTTCCCTGGCACTGCACACAACTACAAGTGGCAA------------------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21424837 174 + 61074082 ttggtgacttgaagaaaggc-ctctttctggctagacacatcccaca-ggtgcctggtctaggaaggagca--------caggcgctgccctttagcttccatgtg-------accctaccactgggtgttcttttatctgcaattg-------ctgcacatggcagccttgGGAATAACCACGCAGCCTGCTCGCAG i canFam3.chr9 I 4 C 0 s dasNov3.JH570468 411089 161 - 852752 TGAATGAAGTAGAGTGAGGctccctctctgg-tggacatagccc-ca-ggtacctgatctggcaagcagtg--------catcagctg-------gttttcaacctttctgcagtcccacagctgggtgctatt--------------ttacaactgcaT-TTGGCACCTTGAAGCAACCATTTGGGCCTGCTT---- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2997030 209 + 8555354 I e micMur3.chr16 35909385 232 - 65901067 I a score=10035.000000 s hg38.chr17_GL383564v2_alt 100601 1 + 133151 C s panTro5.chr17 16289759 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194621 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029655 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011966 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082942 1 - 77216781 C i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995202 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052905 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937865 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893455 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122900 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145260 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1877285 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 I 4 s aotNan1.NW_018502359v1 6994066 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 I 3 s otoGar3.GL873537 22812537 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21425011 1 + 61074082 T i canFam3.chr9 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2997030 209 + 8555354 I e micMur3.chr16 35909385 232 - 65901067 I e dasNov3.JH570468 411250 0 - 852752 C e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=14776.000000 s hg38.chr17_GL383564v2_alt 100602 5 + 133151 TTCAT s panTro5.chr17 16289760 5 + 83181570 TTCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194622 5 + 83442489 TTCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029656 5 + 4267968 TTCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011967 5 - 2193130 TTCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082943 5 - 77216781 CTCGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995203 5 - 80997621 CTCGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052906 5 + 10377808 CTCGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937866 5 - 8458610 CTTGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893456 5 + 75148670 CTCGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122901 5 + 4244037 CTCGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145261 5 + 4569836 CCCGT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22812538 2 + 28711273 TT--- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21425012 5 + 61074082 CTGGC i canFam3.chr9 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e proCoq1.NW_012135969v1 2997030 209 + 8555354 I e micMur3.chr16 35909385 232 - 65901067 I e dasNov3.JH570468 411250 0 - 852752 C e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=111984.000000 s hg38.chr17_GL383564v2_alt 100607 13 + 133151 CCCTGGAC--TCCAT s panTro5.chr17 16289765 13 + 83181570 CCCTGGAC--TCCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194627 13 + 83442489 CCCTGGAC--TCCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029661 13 + 4267968 CCCTGGAC--TCCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011972 13 - 2193130 CCCTGGAC--TCCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30082948 13 - 77216781 CCCTGGAC--TCCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995208 13 - 80997621 CCCTGGAC--TCCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052911 13 + 10377808 CCCTGGAC--TCCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937871 13 - 8458610 CCCTGGAC--TCCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893461 13 + 75148670 CCCTGGAC--TCCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122906 13 + 4244037 CCCTGGAC--TCCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145266 13 + 4569836 CCCTGGAC--TCCAG i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2997239 13 + 8555354 CCCTGGAC--TCCAC i proCoq1.NW_012135969v1 I 209 I 1 s otoGar3.GL873537 22812540 9 + 28711273 ----GGAC--ACCCT i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21425017 13 + 61074082 CCCCGGAC--CCCAT i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 411250 14 - 852752 -CATGGACAATCCTC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e micMur3.chr16 35909385 232 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=662016.000000 s hg38.chr17_GL383564v2_alt 100620 74 + 133151 CTGGCCATTGTCCCTGCTAGATTAGAGCTTGAGTCAGACAGTTTAAATAATTTTGAGGAATTCTCTCATTTTTT- s panTro5.chr17 16289778 73 + 83181570 CTGGCCATTGTCCCTGCTAGATTAGAGCTTGAGTCAGACAGTTTAAATAATTTTGAGAAATTCTCTCATTTTT-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194640 73 + 83442489 CTGGCCATTGTCCCTGCTAGATTAGAGCTTGAGTCAGACAGTTTAAATAATTTTGAGAAATTCTCTCATTTTT-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029674 73 + 4267968 CTGGCCATTGTCCCTGCTAGATTAGAGCTTGAGTCAGACAGTTTAAATAATTTTGAGGAATTCTCTCATTTTT-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2011985 73 - 2193130 CCGGCCATTGTCCCTGCTAGATTAGAGCTTGAGTCAGACAGTTTAAATAATTTTGAAGAAttttctctttttt-- i nomLeu3.chrUn_GL397460_1 C 0 I 302 s rheMac8.chr16 30082961 73 - 77216781 CCGGCCATTGTCCCTGCTAGATTAGCACGTGAGTCAGACAGTTTAAATAATTTTGAAGAATGTTCACATTTTT-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995221 73 - 80997621 CCGGCCATTGTCCCTGCTAGATTAGCACGTGAGTCAGACAGTTTAAATAATTTTGAAGAATGTTCACATTTTT-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052924 73 + 10377808 CCGGCCATTGTCCCTGCTAGATTAGCACGTGAGTCAGACAGTTTAAATAATTTTGAAGAATGTTCACATTTTT-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937884 73 - 8458610 CCGGCCATTGTCCCTGCTAGATGAGCACTTGAGTCAGACAGTTTAAATAATTTTGAAGAATTTTCACATTTTT-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893474 73 + 75148670 CCGGCCATTGTCCCTGATAGATTAGCGCTTGAGTCAGACAGTTTAAATAATTTTGAAGAATTTTCACATTTTA-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122919 73 + 4244037 CCGGCCATTGTCCCTGCTAGATTAGCACTTGAGTCAGACAGTTGAAATAATTTTGAAGAATTTTCACATTTTT-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145279 73 + 4569836 CCGGCCATTCTCCCTGCTAGATTAGCACTTGAGTCAGAGAGTTTAAATAATTTTGAAGAATCTTCACATTTTT-- i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35909617 73 - 65901067 CTGGCCACTGTCCCTGCCAGATTGGCCCTCAACTCAGACAGTTTAAATAATTTTGAAAAATTTTCACATTTTA-- i micMur3.chr16 I 232 C 0 s proCoq1.NW_012135969v1 2997253 73 + 8555354 CAGGCCATTGTCCCTGACAGATTGGCCCTCGAGTCAGACAGTTTAAATAATTTTGAAAACTTTTCACATTTTA-- i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22812550 72 + 28711273 TGGGCCATTGT-CCTGCTAGATTGGCCCTCAAGTCAGGCAGTTTAAATAATTTCGAAGGATCCTCACATTTTA-- i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21425031 73 + 61074082 CAGGTTACTGTCTCTCCTAGATTGGTCCTCAAGTCAAATAGTGTATATAATATTGAAGAATTTTCATATTTCT-- i canFam3.chr9 I 1 I 1 s dasNov3.JH570468 411264 72 - 852752 CCAGTGATTGACCATGCTCCATCAGTCCTCAAGTTGGATAGTTTAAATAACTCTGAAGA--TTTCACATTTCT-T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=568531.000000 s hg38.chr17_GL383564v2_alt 100694 58 + 133151 AAACTGATCCTTGTGGTACTTTTATGGCAGACGTAAAGTAGGCACACAAT---------------AAGTGCTC s panTro5.chr17 16289851 58 + 83181570 AAACTGATCCTTGTGGTACTTTTATGGCAGACACAAAGTAGgcacacaat---------------aggtgctc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194713 58 + 83442489 AAACTGATCCTTGTGGTACTTTTATGGCAGACACAAAGTAGgcacacaat---------------aggtgctc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029747 58 + 4267968 AAACTGATCCTTGTGGTATTTTTATGGCAGACATAAAGTAGgcacacaat---------------aggtgctc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2012360 58 - 2193130 AAACTGATCCTTGTGGTACTTTTACGGCAGAcacaaagttggcacacaat---------------aggtgctc i nomLeu3.chrUn_GL397460_1 I 302 C 0 s rheMac8.chr16 30083034 58 - 77216781 AAACTGATCCTTGTGGTACTTTTATAGCAGACACAAAGTAGGCACACAAC---------------AGGTGCTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995294 58 - 80997621 AAACTGATCCTTGTGGTACTTTTATAGCAGACACAAAGTAGGCACGCAAT---------------AGGTGCTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2052997 58 + 10377808 AAACTGATCCTTGTGGTACTTTTATAGCAGACACAAAGTAGGCACACAAT---------------AGGTGCTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1937957 58 - 8458610 AAACTGATCCTTGTGGTACTTTTATGGCAGACACAAAGTAGgcacacaat---------------aggtgctc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893547 58 + 75148670 AAACTGATCCTTGTGGTACTTTTATGGCAGACACAAAGTAGGCACACAAT---------------AGGTGCTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2122992 58 + 4244037 AAACTGATCCTTGTGGTACTTTTATAGCAGACACAAAGTAGgcacacaat---------------aggtgctc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145352 58 + 4569836 AAACTGATCCTTGTGGTACTTTTATGGCAGACACAAAGTAGgcacacaat---------------aggtgctc i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35909690 58 - 65901067 AGACCTATCTTTGTAGCACCTTTATGGTAGACACAAAGTAGGCACATAAT---------------AGGTGCTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2997326 58 + 8555354 AAACCAATCTTTGTAGTACCTTGATGGTGGAcacaacgtaggcacataat---------------aggtgctc i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22812622 52 + 28711273 ------ACCTTTGTAGTACTTTTATGGCAGACACAAAGTAGGCACGTAAT---------------AGGGGCTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21425105 72 + 61074082 -AACTGATCCTCATGTGCCTTTTATGGCAGACATGTAGGAAGCACATGATCTATTATGTCCACCCAGGTGTTT i canFam3.chr9 I 1 I 132 s dasNov3.JH570468 411336 56 - 852752 -AAGTGATCCATGTAGTATCTTTATGGCAGATCCATA-CAAGCACATAAC---------------AGGTGTTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=1568087.000000 s hg38.chr17_GL383564v2_alt 100752 179 + 133151 AACAAATAATTA--ATAATCTGCCTGCCTGAAATGCATAAcctatttagggcagatgaggaaatgaggcatagaggggttGCTTGAGCAATACTATGCAGCAAAAAATG-TT-TTTGTTTATCAACAGAAGACGCACTTAGGCAA--CT-GAGAAGAGCAGGAAACATGTGGGTACATGATTGTCT s panTro5.chr17 16289909 179 + 83181570 aacaaataatta--ataatctgCCTGCCTGAAATGCATAAcctatttagggcagatgaggaaatgaggcatagaggggttGCTTGAGCAATACTATGCAGCAAAAAATA-TT-TTTGTTTATCAACAGAAGACGCACTTAGGCAA--CT-GAGAAGAGCAGGAAACATGTGGGTACATGATTGTCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194771 179 + 83442489 aacaaataatta--ataatctgCCTGCCTGAAATGCATAAcctatttagggcagatgaggaaatgaggcatagaggggttGCTTGAGCAATACTATGCAGCAAAAAATA-TT-TTTGTTTATCAACAGAAGACGCACTTAGGCAA--CT-GAGAAGAGCAGGAAACATGTGGGTACATGATTGTCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029805 179 + 4267968 aacaaataatta--ataatctgCCTGCCTGAAATGCATAAcctatttagggcagatgaggaaatgaggcatagaggggttGCTTGAGCAATACTATGCAGCGAAAAATG-TT-TTTGTTTATCAACAGAAGGCGCACTTAGGCAA--CT-GAGAAGAGCAGGAAACATGTGGGTACATGATTGTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2012418 176 - 2193130 aacaaataattA--ATAATCTGCCTGCCTGAAATGCATAACCTATTTAGAGcagatgaggaaatgaggcatagaggggttgcttgagcaatgccatgcagcAAAAAATG-TT-TTTGTTTATCAACAGAAGACGCACTTAGGCAA--CT-G---AGAGCAGGAAACATGTGGGTACATGATTGTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083092 177 - 77216781 AACAAATAATTA--ATAATCTGCCTGCCTGAAATGCGTAACCTATTTAGGGCAGAGAAGGAGATGAGGCATAGAGGTGTTGCTTGAGCAATGTCATGCAGCAAAACAAG-TT-TTTGTTTATCAACAGAAGATGCACTTAGGCAA--CT-GAGAAGAGCAGTAAAC--GTGTGTACAGGATTGTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995352 179 - 80997621 AACAAATAATTA--ATAATCTGCCTGCCTGAAATGCGTAACCTATTTAGGGCAGAGAAGGAGATGAGGCATAGAGGTGTTGCTTGAGCAATGTCATGCAGCAAAACAAG-TT-TTTGTTTATCAACAGAAGATGCACTTAGGCAA--CT-GAGCAGAGCAGTAAACATGTGTGTACAGGATTGTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053055 177 + 10377808 AACAAATAATTA--ATAATCTGCCTGCCTGAAATGCGTAACCTATTTAGGGCAGAGAAGGAGATGAGGCATAGAGGTGTTGCTTGAGCAATGTCATGCAGCAAAACAAG-TT-TTTGTTTATCAACAGAAGATGCACTTAGGCAA--CT-GAGAAGAGCAGTAAAC--GTGTGTACAGGATTGTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938015 179 - 8458610 aacaaataatta--ataatctgCCTGCCTGAAATGCATAACCTATTTAGGGCAGAGAAGGAGATGAGGCATAGAGGTGTTGCTTGAGCAATGTCATGCAGCAAAACAAG-TT-TTTGTTTATCAACAGAAGATGCACTTAGGCAA--CT-GAGAAGAGCAGTAAACATGTGTGTACAGGATTGTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893605 179 + 75148670 AACAAATAATTA--ATAATCTGCCTACCTGAAATGCATAACCTATTTAGGGCAGATGAGGAGATGACGCATAGAGGTGTTGCTTGAGCAATGTCATGCAGCAAAACAAG-TT-TTTGTGTATCAACAGAAGATGCACTTAGGCAA--CT-GAGAAAAGCAGTAAACATGTGTGTACAGGATTGTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123050 179 + 4244037 aacaaataatta--ataatctgCCTGCCTGAAATGCGTAACCTATTTAGGGCAGAGAAGGAGATGAGGCATAGAGGTGTTGCTTGAGCAAGGTCATGCAGCAAAACAAG-TT-TTTGTTTATCAACAGAAGATGCACTTAGGCAA--CT-GAGAAGAGCAGTAAACATGTGTGTACAGGATTGTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145410 179 + 4569836 aacaaataatta--ataatctgCCTGCCTGAAATGCATAAcctatttagggcagatgaggagatgaggcatagaggtgttgcttgagcaatgtcatgcagcAAAACAAG-TT-TTTGTTTATCAACAGAAGATGCACCTAGGCAA--CT-GAGAAGAGCAGTAAACATGTGTGTACAGGATTGTCT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35909748 179 - 65901067 AACAAATAATTA--AGCACCTGCCTGCCCCAAattaataacccctttaggtcagacgaagaaacggagcacagaggggttgcttgagcaatgttatgcagc-AGAAATG-TT-TTTATTCACCTGCAGAAGATGCATGTAGGTGGCTCT-GAGAAGAGCAGGAAACGTGTAGGCACACGAGTGTC- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 2997384 180 + 8555354 aacaaataattA--AGCACCTGCCTGCCTGAAattaataacccctttaggtcagacgaggaaacggagcatagaggggttgctcgagcaatgttatgcagcAAAAAATG-TT-TTTATTCACCTGCAGAAGATGCGTGTAGGTGGCTCT-GAGGAGAGCAGGAAACATGTAGGTACACGAGCGCC- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22812674 178 + 28711273 AGCAAATAAGTA--AGTGCCTGCCTGCTGGAAATTAATAACCCATTTAGATCAGATGAAAGAA---AGCAGAGAGAGGCTGCATGAGCAGCATCAGGCAGCCAAAAATG-TTGTCTGTTCACCTGCGGAAGGTGCACGTAGGAGGCTCT-GAGAAGAGCAGGAGACGTGTAGGAACACGAGTGCC- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21425309 183 + 61074082 AACATGTAACAAATATAACTTGCCTGCCTGAGATTAATAACTCATTTAGGACAGATGAAGGAATGAAGCACAGAAAGGTTGCTTGAGGAATGCCACACAGCAAAAAGTGCTT-TTCATTCATTGGGAGCAGAAGCCTTTGGGTGA--CTAGAGAAGAAGAGAAACTATGTAGGCACATGATTGGCA i canFam3.chr9 I 132 C 0 s dasNov3.JH570468 411392 161 - 852752 AACAAATAATTA--ACAACCTGCCTGACTGAAATCAATAACCCATGTAAGGCAGATGAACAAA--------------------TACATAATGTTAAGCAGCAAGAAACG-TT-TTTATTTATCAGCAAGATATGCACTTGGGTGACTCT-GAGAAGAGCGGGAAACATGTAGACACATGATTGTCT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22074177 638 - 122082543 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=2640998.000000 s hg38.chr17_GL383564v2_alt 100931 280 + 133151 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTTTCTCAAACTTGACGC--TGTTCTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAACCATGACACTCATAGGATTAGACGTGCAACTTCATGGTGAAAGAACTTT-GGTGGCAAGAAC----AGGGGTACAGAATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AAGAACTAAAGTGGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTC----TCAG------AGGTGCTTAAGTGTAAACC s panTro5.chr17 16290088 280 + 83181570 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTTTCTCAAACTTGATGC--TGTTCTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAACCATGACATTCATAGGATTAGACGTGAAACTTCATGGTGAAAGAACTTT-GGTGGCAAGAAC----AGGGGTACACAATGCAACATTTGAACGAAGCCCAACAGTAAACAGAAACT-----AAGAACTAAAGTGGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTC----TCAG------AGATGCTTAAGTGTAAACC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16194950 280 + 83442489 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTTTCTCAAACTTGATGC--TGTTCTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAACCATGACATTCATAGGATTAGACGTGAAACTTCATGGTGAAAGAACTTT-GGTGGCAAGAAC----AGGGGTACACAATGCAACATTTGAACGAAGCCCAACAGTAAACAGAAACT-----AAGAACTAAAGTGGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTC----TCAG------AGATGCTTAAGTGTAAACC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4029984 280 + 4267968 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTTTCTCAAACTTGACGC--TGTTCTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAACCACGACACTCATAGGATTAGACGTGAAACTTCATGGTGAAAGAACTTT-GGTGGCAAGAAC----AGGGGTACAGAATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AAGAACTAAAGTGGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTC----TCAG------AGGTGCTTAAGTGTAAACC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2012594 280 - 2193130 TTTTTCGAATGAGAAGGGAATAATTCTTCCTTTTCTCAAACTTGACGC--TGTTCTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAACCATGACATTCATAGGATTAGACGTGAAAGTTCATGGTGAAAGAACTTT-GGTGGCAAGAAC----AGGGGTACAGGATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AAGAACTAAAGTGGTTTGCCCACACAAGGATTGAATTTTTGCCAAGGGTTTTTCCAG---TTC----TCAG------AGGTGCTTAAGTGTAAACC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083269 280 - 77216781 TTTTTCTAACGAGAAGGGAGTAATTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTCATAGGATTAGATGTGAAACTTCATGGTGAAATAACTTT-AGTGGCAAGAAC----AGGGGTACAGAATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AGGAACTAAACTAGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTT----TCAG------AGGTGCTTAAGCATAAACC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995531 280 - 80997621 TTTTTCTAACGAGAAGGGAGTAATTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTCATAGGATTAGATGTGAAACTTCATGGTGAAATAACTTT-AGTGGCAAGAAC----AGGGGTACAGAATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AGGAACTAAACTAGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTT----TCAG------AGGTGCTTAAGCATAAACC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053232 280 + 10377808 TTTTTCTAACGAGAAGGGAGTAATTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTCATAGGATTAGATGTGAAACTTCATGGTGAAATAACTTT-AGTGGCAAGAAC----AGGGGCACAGAATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AGGAACTAAACTAGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTT----TCAG------AGGTGCTTAAGCATAAACC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938194 280 - 8458610 TTTTTCTAATGAGAAGGGAGTAGTTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTCACAGGATTAGATGTGAAACTTCATGGTGAAATAACTTT-AGTGGCAAGAAC----AGGGGTACAGAATGTAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AGGAACTAAACTGGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTT----TCAG------AGGTGCTTAAGCATAAACC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64893784 280 + 75148670 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTGGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTCATAGGATTAGATGTGAAACTTCATGGTGAAATAACTCT-GGTGGCAAGAAC----AGGGGTACAGAATGCAACATTTGAACCCAGCCCAACAGTAAACAGAAACT-----AGGAACTAAACTGGTTTGCCCACACGACGATTGAATTTGTGCCAAGGGTTCTTCCAG---TTT----TCAG------AGGTGCTTAAGTATAAACC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123229 280 + 4244037 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTCACAGGATTAGATGTGAAACTTCATGGTGAAATAACTTC-AGTGGCAAGAAC----AGGGGTACAGAATGTAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AGGAACTAAACTGGTTTGCCCACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTT----TCAG------AGGTGCTTAAGCATAAACC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145589 278 + 4569836 TTTTTCTAATGAGAAGGGAGTAATTCTTCCTTCTCTCAACCTTGACGC--TGTTTTTTGAAGGCAGTATGTTATTCTTAGAT------------TAACAATCATGACACTC--AGGATTAGATGTGAAACTTCATGGTGAAATAACTTT-GGTGGCAAGAAC----AGGGGTACAGAATGCAACATTTGAACCAAGCCCAACAGTAAACAGAAACT-----AAGAACTAAACTGGTTTGCCTACACAAAGATTGAATTTGTGCCAAGGGTTTTTCCAG---TTT----TCAG------AGGTGCTTAAGTATAAACC i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35909927 293 - 65901067 TTTCTCTAATGAGAAGGGAGTGATTCCTTCTCCTTTTATCCTTGACACTATGTTCTTTGAAGG-AGTATGTTGTTCCTACAT------------TAACAACCATGACACTCACAGGATGAGACACGAAACTACATTGTGAAAGGACTTT-GGTGACATGAACAGGAAGGGGTACAGAGTGCAACTTTTGAAACAAGCTCAATGGAAAACAGAAATTAAGTAAAGAACTTAAGTGGTTTGACCGCACAAAGACAGAACGCATGCCAAGAATTTTTCCAGTTCTTC----TCAG------AGGTGCTTAAGCGTAGACC i micMur3.chr16 C 0 I 82 s proCoq1.NW_012135969v1 2997564 294 + 8555354 TTTTTCTAATGAGAAGGGAGGGATTCCTTCTTCCTTTAACCCTGACACTGTGTTCTTTGGAGGAAATATGTTGTTCCTACAT------------TAACAACCATGAAACTCACAGGATGGGACATGAAACTTCATTGTGAAAGGACTCT-GGTGACATGAACAGGAACGGGTACAGAGTGCAACTTTTGAAACAAGCTCAATATAAAACAGAAAGTAAGTAAAGAACTAAAGTGGTTTGACCACACAAAGACAGAACTTATGCTAAGAATTTTTCCAGTTCTTC----TCAG------TGGTGCTTAAGCGTAGACC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22812852 273 + 28711273 TGTTTCTAATGAGAAGCGAGTAATTCCTTCTTCTTTTAATC-TGACACGATGTTTTTTGAAGGAAATATGCTATTCTTCCAT------------TAACAACCTTGACACTCACAGGATTAGACATGAAACTTCATTGTGAAAGAACTTT-GGTGACATGAAC--------------CATGAAACTTTTGAAA------CAATATAAAACAGAAATTAAGTAAAGCACTAAAGTGGTTTGACCACACAAAGATGGACTCCATGCCAAGGATTTTTCCACTTCTTC----TCAG------AGGTACTTCAGCATAGACC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22074815 276 - 122082543 TTTGTCTGATGAGAAAGGGACACACCCTCCTCCTTTTCACCTGGGCACTGTGTTCTTTGAAGGAGGAATGGCTTTCCCATGT------------TAACAACAGTGG-----ACAGGACTAGGCATGGAACTAGCTTTTGAAAGCATTTC-GGTGATGAGAAC----AGAGTTGCAGAG---ATCTTTTGAATGAAGCTTGCTGCAAAGGAGAAATT-----GAGAACTTAAGTGATTTGGCCACGGAATGACTGGGTTGGTGCCAG----TCCTCCTG---CCT----GCGGTTCACCAAATGCTTGAGGCAAGAGG i mm10.chr11 I 638 C 0 s canFam3.chr9 21425492 284 + 61074082 -GTTTCTAATGA-AAGGGAGTAATTCCCCTTTCTCTTAACCCTGGTGCTGTGTGCTTTGAAGGCAG-GTGTTGTTCCTACAT------------TAATAACCACAACACTCACAGGATTGGACATG-AACTTCAT-ATGAAATAGTGTT-GGTGACAGGAAC----AGGGGTATGGAGTGCAACTTTTGAATTAAGCCCAGCAC--AATACAAATTAAGTAAAGAGCTAAAGTGGTTTTAATACACAAAGGTGGAATTCATGCCAAGAGTTTGACCAG---TTCTGTTTTGG------AGGTGCTTAAGTGGAGACC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 411553 260 - 852752 ------------------------TTTCCCTTCTCTAAACCTTGGCACTGTGTTCTTTTAA-GCTGTATGTTACTCCTATATAGTAGGAGTATAGGACATTCCT-ATAGTCACAGGATTGGACATGCAATTTCATTGTGAAAGAACTTTGGGTGACAAAAAC----AAAGGTGCAGAGTGTAAC-TTGGAATTAAGACTAATATAAAGCAGAGATTAAGGAAAGAACTAAAGTGGTTTTAGCATACAAAGGTTGAACTCATGCCAATGAGTTTTCCAGATATTC----TTGG------AGG---------------- i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=198590.000000 s hg38.chr17_GL383564v2_alt 101211 34 + 133151 CAGAAAGTTACCTGACATGC-----T-----CACGTCCCTGTGT s panTro5.chr17 16290368 34 + 83181570 CAGAAAGTTGCCTGACATGC-----T-----CACATCCCTGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195230 34 + 83442489 CAGAAAGTTGCCTGACATGC-----T-----CACATCCCTGTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030264 34 + 4267968 CAGAAAGTTACCTGACATGC-----T-----CATGTCCCTGTGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2012874 34 - 2193130 CAGAAAGTTGCCTGACATGC-----T-----CACGTCCCTGTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083549 34 - 77216781 CAGAAAGTTGCCTGACATAC-----T-----CACATCCCTGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995811 34 - 80997621 CAGAAAGTTGCCTGACATAC-----T-----CACATCCCTGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053512 34 + 10377808 CAGAAAGTTGCCTGACATAC-----T-----CACATCCCTGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938474 34 - 8458610 CAGAAAGTTGCCTGACATGC-----T-----CACATCCCTGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894064 34 + 75148670 CAGAAAGTTGCCTGACATGC-----T-----TACGTCCCTGTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123509 34 + 4244037 CAGAAAGTTGCCTGACATGC-----T-----CACATCCCTGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145867 34 + 4569836 CAGAAAGTTGCCTGACATGG-----T-----CACGTCCCTGTGG i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2997858 34 + 8555354 CAGAAAGTGCCCTGATGTGC-----T-----TGGGTCACAGTGC i proCoq1.NW_012135969v1 C 0 I 49 s otoGar3.GL873537 22813125 36 + 28711273 CAGAAGTTTCCCCAATGAGTCCTTGT-----TAGAACACAG--- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075091 28 - 122082543 CAGGAGCTTGTGTG----GC-----T-----CATGGTTCCAC-- i mm10.chr11 C 0 C 0 s canFam3.chr9 21425776 29 + 61074082 -CCAAAGGTGACTGTCATG------T-----CACAGAACTG--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 411813 36 - 852752 -AGAAAGTTGTCTGACCTGC-----TATGTCCAAGGTGCTGG-- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35910220 82 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=244422.000000 s hg38.chr17_GL383564v2_alt 101245 51 + 133151 CTCCGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCTGCCCCTTT s panTro5.chr17 16290402 51 + 83181570 CTCTGTGA-TATGCTGAGACTGCAAAG-------TTTCGGTCTGGTC-----TGCTCCCCTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195264 51 + 83442489 CTCTGTGA-TATGCTGAGACTGCAAAG-------TTTCGGTCTGGTC-----TGCTCCCCTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030298 51 + 4267968 CTCCGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCTGCCCCTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2012908 51 - 2193130 CTCCATGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCTGCCCGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083583 50 - 77216781 CTCCGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCCGCCC-TCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995845 50 - 80997621 CTCCGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCCGCCC-TCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053546 50 + 10377808 CTCCGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCCGCCC-TCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938508 50 - 8458610 CTCTGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCTGCCC-TCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894098 50 + 75148670 CTCCGTGA-TGTGCTGAGACTGCAAAG-------CTTTGGTCTGGTC-----TGCTGCCC-TCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123543 50 + 4244037 CTCTGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCTGCCC-TCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145901 50 + 4569836 CTCTGTGA-TATGCTGAGACTGCAAAG-------TTTTGGTCTGGTC-----TGCTGCCC-TCT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813161 51 + 28711273 CTTAGCGA-AGGGCTGGGACCAGGATG-------CTCTGATCTGGTCCCC-TTGCTCCTC---- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075119 30 - 122082543 -------------CCAGGACCT---AG-------CTTCATCCCTTCA-----CGCTCA------ i mm10.chr11 C 0 C 0 s canFam3.chr9 21425805 53 + 61074082 CCCAGTAACTGAGCCAAGATTTGAAAG-------CTTTAATTTTGCCCC---TGTGGCTCGTC- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 411849 59 - 852752 -CCAGGGACTGGGCCAAGACTTGAAAGCGTCACTCGTCACTCTGGTTACCATTGCTCTTC---- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2997892 49 + 8555354 I e micMur3.chr16 35910220 82 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=1324366.000000 s hg38.chr17_GL383564v2_alt 101296 137 + 133151 TTTCCATAGA-GCTCT--------AGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACAAT-----GTGAGGCATCCATTCTAGAAAGTTTTGAA-TTCTAATTGAGAGAGTCAGGATGTTTCTA s panTro5.chr17 16290453 136 + 83181570 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAA-CTC---AGGGCCTGTTGAATCAAAGGTGGTCAAATGTAACAAT-----GTGAGGCATCCATTCTAGAAAGTTTTGAA-TTCTAATTGAGAGAGTCAGGATGTTTCTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195315 136 + 83442489 TTTTCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAA-CTC---AGGGCCTGTTGAATCAAAGGTGGTCAAATGTAACAAT-----GTGAGGCATCCATTCTAGAAAGTTTTGAA-TTCTAATTGAGAGAGTCAGGATGTTTCTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030349 137 + 4267968 TTTCCATAGA-GCTCT--------AGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAGATGTAACAAT-----GTGAGGCATCCATTCTAGAAAGTTTTGAA-TTCTAATTGAGAGAGTCAGGATGTTTCTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2012959 137 - 2193130 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACAAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTCTAATTGAGAAAGTCAAGATGTTTCTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083633 137 - 77216781 TTTCCATAGA-GCTCT--------GGCCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGTCTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27995895 137 - 80997621 TTTCCATAGA-GCTCT--------GGCCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGTCTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053596 137 + 10377808 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGTCTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938558 137 - 8458610 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGTCTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894148 137 + 75148670 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGTCTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123593 137 + 4244037 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAAGCTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGCCTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2145951 137 + 4569836 TTTCCATAGA-GCTCT--------GGGCATCTCTTGCTAGACATAAAACTC---AGGGGCTGTTGAATCAAAGGTGGTCAAATGTAACCAT-----GTGAGGCATCCATTCTAGAAAGTTTTGGA-TTATAATTGAGAGAGTCAGGATGTGTCTA i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35910302 137 - 65901067 TGTCCACAGA-GGACT--------GGGCACCCCTTGCAGGACATAAAGCTC---AGGGGCTTGGGAATCAAAGCTGATCAAATGTAACAAC-----ATAAGGCATACATTCTAGAAAGTTTTGGA-TTCCAACTGAGAGAGTCAGGGTGTGTCTA i micMur3.chr16 I 82 I 91 s proCoq1.NW_012135969v1 2997941 137 + 8555354 TGTCCACAGA-GGACT--------GGGCACCTCTTGCAGGACATAAAGCTC---AGGGGCTTTTCAATCCAAGCTGATCAAATGTAACAAC-----ATAAGGCATACATTCTAGAAAGTTTTGGA-TTCCAACTGAGAGAATCAGAGTGTGTCAA i proCoq1.NW_012135969v1 I 49 C 0 s otoGar3.GL873537 22813212 137 + 28711273 TGTCCACAGA-GGACT--------AGGCATCTCTCGCTAGATGTAAAGCTC---AGGGGCTTCAGGGTCAAAGCTGATCAAATGCGACAAC-----ATGAGGTGTACATTGTAGAAAGTTTTGGA-TTCCAGTTGTGAAAGGCAGGCTGCTTCTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075149 149 - 122082543 --TCCTTACT-GATCTCAAAGATGAGGCTTCTGTGGTTAGACGGAAGGCTC--AAGGGGCATTTGAACTAAGGCTGGCTGAATGCAACAATAACACGGGAGCTGTGCATTAAAGAAAGGTTTAGA-TTCTAACAGAGAGAACCAGGGTGTGATGA i mm10.chr11 C 0 I 4 s canFam3.chr9 21425858 116 + 61074082 TCTCTACAGAGGGGCT--------GGGCATCTCTTG------------CTT---AG---------AAGTAAAGCTGGCCAAAGGTGATCAA-----ACGAGGTACACATTCTAGAAAGTTTTGGAGTTTTAATT--GAAAATCAGGCTGTGTTTA i canFam3.chr9 C 0 I 3 s dasNov3.JH570468 411908 140 - 852752 TCTCTCCAGC-ATGCT--------GGGCACTTCTTGCAGAAAAGAAAATGCTGAAATGGCTTTTGAACCAAAGCTGATCAAAGGTAACAAA-----GTAAGGTGTACGTTCTAGAAAGTTCTGGA-TTTTAATAGTCAGAGTGAGGGCTCTGTCA i dasNov3.JH570468 C 0 C 0 e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=387098.000000 s hg38.chr17_GL383564v2_alt 101433 60 + 133151 ---AACTTTTTCTTTTTCTT--TTCCCTTTAGTGATCATTAGGTTAAGCTGTGACTGATCACAAG s panTro5.chr17 16290589 60 + 83181570 ---AATTTTTTCTTTTTCTT--TTCCCTTTAGTGATCATTAGGTTAAGCTGTGACTGATCACAAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195451 60 + 83442489 ---AATTTTTTCTTTTTCTT--TTCCCTTTAGTGATCATTAGGTTAAGCTGTGACTGATCACAAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030486 60 + 4267968 ---AATTTTTTCTTTTTCTT--TTCGCTTTAGTGATCATTAGGTTAAGCTGTGACTGATCACAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013096 60 - 2193130 ---AATTTTTTCTTTTTCTT--TTCCCTTTAGTGATCATTAGGTTAAGCTGTGACTGATCACAAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083770 58 - 77216781 ---AATTTTTTCTTTT--TT--TCCCCTTTAGTGATCATTAGGTTAAGCCATGACTGATCACAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996032 58 - 80997621 ---AATTTTTTCTTTT--TT--TCCCCTTTAGTGATCATTAGGTTAAGCTATGACTGATCAGAAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053733 58 + 10377808 ---AATTTTTTCTTTT--TT--TCCCCTTTAGTGATCATTAGGTTAAGCTATGACTGATCACAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938695 58 - 8458610 ---AATTTTTTCTTTT--TT--TCCCCTTTAGTGATCATTAGGTTAAGCTATGACTGATCACAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894285 58 + 75148670 ---AATTTTTTCTTTT--TT--TCCCCTTTAGTGATCATTAGGTTAAGCTATCACTGATCACAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123730 58 + 4244037 ---AATTTTTTCTTTT--TT--TCCCCTTTAGTGATCATTAGGTTAAGCTATGACTGATCACAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146088 58 + 4569836 ---AATTTTTTCTTTT--TT--ACCCCTTTAGTGATCATTAGGTTAAGCTATAACTGATCACAAG i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998078 51 + 8555354 ----------CATTTT--TC--CCTCTGGTAGTGAGCATTAGTTCAAGCTGTGACTGACAGCAAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22813349 53 + 28711273 ----------CACTCG--CCCACCCCTTTTAATGACCATTAGCTTAAGCTGTAAGTGAGAATAAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075302 52 - 122082543 ---AATGTTCTA------CT--TTTCGTTTAGTGAGCATTAGACT--GCATTAATTGATAATAAG i mm10.chr11 I 4 C 0 s canFam3.chr9 21425977 41 + 61074082 ---AATCTTTTTTTTT--TT--TCC-----------------ATTAAATTGTGACTAACAGTAAA i canFam3.chr9 I 3 C 0 s dasNov3.JH570468 412048 55 - 852752 AAGAAGCATTTCCTTT--AC--TC------AATGAACATTACATTACTCTGTGTCTGATGACAAC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35910439 91 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=261540.000000 s hg38.chr17_GL383564v2_alt 101493 33 + 133151 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTTT s panTro5.chr17 16290649 33 + 83181570 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195511 33 + 83442489 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030546 33 + 4267968 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013156 33 - 2193130 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083828 33 - 77216781 TAAAGACCTGGTG-AAAAAGTGAACTGCTTGTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996090 33 - 80997621 TAAAGACCTGGTG-AAAAAGTGAACTGCTTGTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053791 33 + 10377808 TAAAGACCTGGTG-AAAAAGTGAACTGCTTGTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938753 33 - 8458610 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894343 33 + 75148670 TAGAGACCTGGTG-AAAAAGTGAACTTCTTGTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123788 33 + 4244037 TAAAGACCTGGTG-AAAAAGTGAACTTCTTTTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146146 33 + 4569836 TAAAGACCTGGTG-AAAAAGTGAACTTCTTGTAT i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998129 33 + 8555354 TGAAGATCTGGTG-TAAGAGGGAACCTCTTGGTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22813402 33 + 28711273 TGAAGACCTGGTA-TAAAAGTGACCCTCTTGGTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21426018 30 + 61074082 TGAAGACCTGGT----AAAGTAAATCTCTTGGTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412103 34 - 852752 TGAAGAGCTGTTGAAAAAAATGACCCCCTTATTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e micMur3.chr16 35910439 91 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=1257484.000000 s hg38.chr17_GL383564v2_alt 101526 141 + 133151 GGACTAACAAGTTCTCTCAAATTCACACTAATTGTACATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCA-TGTTTATGTTtatatttttaaagaa----cttagacttgta-atacatttataaaaccataaaatgctagaa s panTro5.chr17 16290682 141 + 83181570 GGACTAACAAGTTCTCTCAAATTCACACTAATTGTACATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCA-TGTTTATGTTtatatttttaaagaa----cttagacttgta-atacatttacaaaaccataaaatgctagaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195544 136 + 83442489 GGACTAACAAGTTCTCTCAAATTCACACTAATTGTACATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCA-TGTTTACGTTTATA-TTTTAAAGAA----CTTAGACTT-----TACATTtacaaaaccataaaatgctagaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030579 141 + 4267968 GGACTAACAAGTTCTCTCAAATTCACACTAATTGTACATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCA-TGTTTATGTCTATATTTTTAAAGAA----CTTAGACTTGTA-ATACATTTACAAAACCATAAAATGCTAGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013189 141 - 2193130 GGACCAACAAGTTCTCTCAAATTCACACTAATTATATATCCAATTAGAG-GAGCTGATTG----AAAAATACCAGTTCA-GGTTTATGTTtatatttttaaagaa----cttagacttgta-atacatttacaaaaccataaaatgctagaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30083861 143 - 77216781 GGACCAACAAGTTCTCTCAAATTCACACTAATTGTATATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CCTAGACTTGTGTATACATTTACAAAACCATAAAATGCTAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996123 143 - 80997621 GGACCAACAAGTTCTCTCAAATTCACACTAATTGTATATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CCTAGACTTGTGTATACATTTACAAAACCATAAAATGCTAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053824 143 + 10377808 GGACCAACAAGTTCTCTTAAATTCACACTAATTGTATATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CCTAGACTTGTGTATACATTTACAAAACCATAAAATGCTAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938786 143 - 8458610 GGACCAACAAGTTCTCTCAAATTCACACTAATTGTATATCCAGTTAGAG-GAGTTGATTG----AAAAATACCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CCTAGACTTGTGTATACATTTACAAAACCATAAAATGCTAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894376 143 + 75148670 GGACCAACAAGTTCTCTCAAATTCACACTAATTGTATATCCAATTAGAG-GAGTTGATTG----AAAAATGCCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CCTAGACTTGTGTATACATTTACAAAACCATAAAATGCTAGAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123821 143 + 4244037 GGACCAACAAGTTCTCTCAAATTCACACTAATTGTATATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CCTAGACTTGTGTATACATTTACAAAACCATAAAATGCTAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146179 143 + 4569836 GGACCAACAAGTTCTCTCAAATTCACACTAATTGTATATCCAATTAGAG-GAGTTGATTG----AAAAATACCAGTTCATTGTTTATGTTAATATTTTTAAAGAA----CTTAGACTTGTGTATATGTTtacaaaaccataaaatgctagaa i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35910530 150 - 65901067 GGACTAAGGAGTTCTCTCAAACTCACACGAATTGCATATCCAATTAAAT-CAGTCGACTGAAAAAAAAATACCAGTTCA-TGTGTATGCCTAGATTTAAAAAAAAAACCCTTGAACTTGTATATGCATTTATAAAACCATAAAATGCTAGAA i micMur3.chr16 I 91 I 118 s proCoq1.NW_012135969v1 2998162 144 + 8555354 GGACCAAGGAGTTCTCTCAAATTCACATGAATTGCATATCCAATTAAAT-CAGCTGATTG---AAAAAATACCAGTTCA-TGTTTATGCCTAGAATTTAAAAAAAA---CTCGAACTTGTATATGCATTTATAAAACCATAAAATGCTAGAA i proCoq1.NW_012135969v1 C 0 I 2 s otoGar3.GL873537 22813435 142 + 28711273 GGACCAAGGAGTTCTTTCAAACGCACACTAATTGCACATCCAATTAAAT-CAGTCAATTG---ACAAAATACCAGTTTA-AGTTTATGGTTAGATTTTAAAAAA-----TCTAGACTTATATATGCCTTTATAAAATCATGAGATACTAGAA i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21426048 142 + 61074082 GAACCAATCAGTTCTTTTAGACTCATACCAATTGCATATCCAATTACAT-AAGAAGATTA---AAAGAATACTAGTTAC-TGTTTACTCCTACA-TTAAAAAAAT----CTTGGACATGTATAGACATTTATAAAAGTACAAAGTGCTAACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412137 139 - 852752 GAACCAAGGAGATCTTGCAAACACACACTAATTACATATCCAATTAAAACGAATCGGTCG----AATAAGACTAGTTAA-TGTTTATGTCTACATTTTTATGT------CTTGGGCATGTT-ATACATTTATAAAGATATGAAATGCTAGA- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=618919.000000 s hg38.chr17_GL383564v2_alt 101667 73 + 133151 ggacat-----------------acatatcaaatgtataattgtgtttgtctctgagaagaagagattggaataagaatggatatggaag s panTro5.chr17 16290823 73 + 83181570 ggacat-----------------acatatcaaatgtataattgtgtttgtctctgggaagaagagattggaatgagaatggatataaaag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195680 73 + 83442489 ggacat-----------------acatatcaaatgtataattgtgtttgtctctgggaagaagagattggaatgagaatggatataaaag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030720 73 + 4267968 CGACAT-----------------ACTTATCAAATGTATAATTGTGTTTGTCTCTGAGAAGAAGAGATTGGAATAAGAATGGATATGAAAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013330 73 - 2193130 ggacat-----------------acatatcaaatgtataattgtgtttgtctctgggaagaagagattggaatgagtatggatgtgaaag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084004 73 - 77216781 GGACAT-----------------ACATATCAAATGTATAATTGTGTTTGTCTCTGGGAAGAAGAGATTGGAATGAAAATGGATGTGAAAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996266 73 - 80997621 GGACAT-----------------ACATATCAAATGTATAATTGTGTTTGTCTCTGGGAAGAAGAGATTGGAATGAAAATGGATGTGAAAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2053967 73 + 10377808 GGACAT-----------------ACATATCAAATGTATAATTGTGTTTGTCTCTGGGAAGAAGAGATTGGAATGAAAATGGATGTGAAAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1938929 73 - 8458610 GGACAT-----------------ACATATCAAATGTATAATTGTGTTTGTCTCTGGGAAGAAGAGATTGGAATGAGAACGGATGTGAAAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894519 73 + 75148670 GGACAT-----------------ACATATCAAATGTATAATTGTGTTTGTCTCTGGGAAGAAGAGATTGGAATGAGAATGGATGTGAAAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2123964 73 + 4244037 GGACAT-----------------ACATATCAAATGTATAATTGTGTTTGTCTCTGGGAAGAAGAGATTGGAATGAGAACGGATGTGAAAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146322 73 + 4569836 ggacat-----------------acatatcaaatgtataattgtgtttgtctctgggaagaagagattggaatgagaatggatgtgtaag i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998308 73 + 8555354 ATATGT-----------------ATATATTAAATTCATGATTATAATTGTCTCTGGTAAGAAAAGATGGGGACAAGAATGAGTATGAAAG i proCoq1.NW_012135969v1 I 2 C 0 s otoGar3.GL873537 22813579 89 + 28711273 ATGTATATATACAAAATGTGTACATATATAAAATTCATGATTGTATTTAATTCTGGTGAGAAAAAAT-GGAATAAGAATGAGTGTGAAAG i otoGar3.GL873537 I 2 I 1840 s canFam3.chr9 21426190 73 + 61074082 GAATGT-----------------ACCTATTAAATTCACTATTGTGTTTGTGTCTGGGAAGAAGGGATTGGAATGTGGATAGCTATGAAAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412276 71 - 852752 --GTAT-----------------ATATATTAAATTCATGATTGTGTCTGTCTCTGGGAAAAAGGGATTGGGATAAGAATGGATATGAATG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e micMur3.chr16 35910680 118 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=226276.000000 s hg38.chr17_GL383564v2_alt 101740 26 + 133151 tcaaagaagttctcaatgctgtattt s panTro5.chr17 16290896 26 + 83181570 tcaaggaagttctcaatgctgtattt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195753 26 + 83442489 tcaaggaagttctcaatgctgtattt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030793 26 + 4267968 TCAAGGAAGTTCTCAATGCTGTATTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013403 26 - 2193130 tcaaggaagttctcagtgctgtattt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084077 26 - 77216781 TCAAGGAAGTTCTCAATGCTGTATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996339 26 - 80997621 TCAAGGAAGTTCTCAATGCTGTATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054040 26 + 10377808 TCAAGGAAGTTCTCAATGCTGTATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939002 26 - 8458610 TCAAGGAAGTTCTCAATGCTGTATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894592 26 + 75148670 TCAAGGAAGTTCTCAATGCTGTATTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124037 26 + 4244037 TCAAGGAAGTTCTCAATGTTGTATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146395 26 + 4569836 tcaaggaagttctcaatgctgtattt i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998381 26 + 8555354 TCAAGGAAGTTCTCGATGTTATCTTT i proCoq1.NW_012135969v1 C 0 I 13 s otoGar3.GL873537 22815508 26 + 28711273 TCAAAGAAGTTCTTGATGTTATCTTT i otoGar3.GL873537 I 1840 I 13 s canFam3.chr9 21426263 23 + 61074082 TCA---AAGTTCTCTATGTGATCTTT i canFam3.chr9 C 0 I 39 s dasNov3.JH570468 412347 26 - 852752 TTAAAAAAGACCTAAATGTTATTTTT i dasNov3.JH570468 C 0 I 13 e mm10.chr11 22075354 0 - 122082543 C e micMur3.chr16 35910680 118 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=84585.000000 s hg38.chr17_GL383564v2_alt 101766 8 + 133151 cttaattt s panTro5.chr17 16290922 8 + 83181570 cttaattt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195779 8 + 83442489 cttaattt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030819 8 + 4267968 CTTAATTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013429 8 - 2193130 cttaattt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084103 8 - 77216781 CTTGATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996365 8 - 80997621 CTTGATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054066 8 + 10377808 CTTGATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939028 8 - 8458610 CTTGATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894618 8 + 75148670 CTTGATTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124063 8 + 4244037 CTTGATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146421 8 + 4569836 cttgattt i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35910798 8 - 65901067 CTTGATTT i micMur3.chr16 I 118 C 0 s proCoq1.NW_012135969v1 2998420 8 + 8555354 CTTGATTT i proCoq1.NW_012135969v1 I 13 C 0 s otoGar3.GL873537 22815547 8 + 28711273 CTTGATTT i otoGar3.GL873537 I 13 C 0 s canFam3.chr9 21426325 8 + 61074082 atttattt i canFam3.chr9 I 39 I 130 s dasNov3.JH570468 412386 8 - 852752 TTTAATTT i dasNov3.JH570468 I 13 C 0 e mm10.chr11 22075354 0 - 122082543 C e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=1226759.000000 s hg38.chr17_GL383564v2_alt 101774 149 + 133151 taAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTGGGTAGGAAAGCACAAGTTGTAAAATA-TATTTTCTC----------TGTTCTTTTTTTTTTT----------------TGACTAGATGTTTGTTTT------------AAAGTATTTTATTGCTATTAAAAGA--AAACA s panTro5.chr17 16290930 148 + 83181570 taaacc---------cactt--------------------------------------------------agagcaaatatg----------------aaaaaata-ttaacagccacagattctgggtaggaaagcacaagttgtaaaata-tattttctc----------tgttcttttttTTTTT-----------------GACTAGATGTTTGTTTT------------AAAGTATTTTATTGCTATTAAAAGA--AAACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195787 148 + 83442489 taaacc---------cactt--------------------------------------------------agagcaaatatg----------------aaaaaata-ttaacagccacagattctgggtaggaaagcgcaagttgtaaaata-tattttctc----------tgttcttttttTTTTT-----------------GACTAGATGTTTGTTTT------------AAAGTATTTTATTGCTATTAAAAGA--AAACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030827 147 + 4267968 TAAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTGGGTAGGAAAGCACAAGTTGTAAAATG-TATTTTCTC----------TGTTCTTTTTTTTTT------------------GACTAGATGTTTGTTTT------------AAAGTATTTTATTGCTATTAAAAGA--AAACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013437 144 - 2193130 taaacc---------cactt--------------------------------------------------agagcaaatacg----------------aaaaaata-ttaacagccacagattctgggtaggaaagcacaagttttaaaata-tattttctc----------tgttctttttttt--------------------gactagatgtttgtttt------------aaa-tattttatTGCTATTaaaaga--aaaca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084111 148 - 77216781 TAAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTGGGTAGGAAAGCACAAGTTTTAAAATA-TATTTTCTC----------TGTTCTTTATTTTTTT-----------------GACTAGCTGTTTGTTTT------------AAAGTATTTTATTGCTATTaaaaga--aaaca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996373 148 - 80997621 TAAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTGGGTAGGAAAGCACAAGTTTTAAAATA-TATTTTCTC----------TGTTCTTTATTTTTTT-----------------GACTAGCTGTTTGTTTT------------AAAGTATTTTATTGCTATTaaaaga--aaaca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054074 148 + 10377808 TAAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTGGGTAGGAAAGCACAAGTTTTAAAATA-TATTTTCTC----------TGTTCTTTATTTTTTT-----------------GATTAGCTGTTTGTTTT------------AAAGTATTTTATTGCTATTaaaaga--aaaca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939036 148 - 8458610 TAAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTGGGTAGGAAAGCACAAGTTTTAAAATA-TATTTTCTC----------TGTTCTTTATTTTTTT-----------------GACTAGCTGTTTGTTTT------------AAAGTATTTTATTGCTATTAAAAGA--AAACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894626 148 + 75148670 TAAACC---------CACTT--------------------------------------------------AGAGCATATATG----------------AAAAAATA-TTAACAGCCACAAATTCTGGGTAGGAAAGCACAAGTTTTAAAATA-TATTTTCTC----------TGTTCTTTATTTTTTT-----------------GACTATCTGTTTGTTTT------------AAAGTATTTTATTGCTATTAAAAGG--AAGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124071 148 + 4244037 TAAACC---------CACTT--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TTAACAGCCACAGATTCTAGGTAGGAAAGCACAAGTTTTAAACTA-TATTTTCTC----------TGTTCTTTATTTTTTT-----------------GACTAGCTGTTTGTTTT------------AAAGTATTTTATTGCTATTaaaaga--aaaca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146429 148 + 4569836 taaacc---------cactt--------------------------------------------------agagcaaatatg----------------aaaaaata-ttaacagccacagattctaggtaggaaagcacaagttttaaaata-tattttctc----------tgttctttATTTCTTT-----------------GACTAGCTGTTTGTTTT------------AAAGTATTTTATTGCTATTaaaaga--aaaca i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35910806 149 - 65901067 TAAGCC---------CACTG--------------------------------------------------AGAGCGAATGTG----------------AAAAAATA-TGAACAGACACTAATCTTG----GGGAAGCACAGGTTTAAAAATA-TATTTTCTC----------TGTCCCTTTTTTCTTTTGTT------------TGACTAGCTGTTTTTTTA------------AAAGTATTTTATTGCTATTAAAACA--AAACA i micMur3.chr16 C 0 I 651 s proCoq1.NW_012135969v1 2998428 145 + 8555354 TAAACC---------CACTG--------------------------------------------------AGAGCAAATATG----------------AAAAAATA-TGAACAGCCACTAATCTTG----GGAAAGCACAGTTTT-AAAATA-TATTTTCTC----------TGTCCTTTTTTTCTTTTGCT------------TGACTAGTTTTTTTTT---------------AAGTATTTTATTGCTATTAAAACA--AAACC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22815555 157 + 28711273 TAAGCC---------CCCTT--------------------------------------------------GGAGAAAATATG----------------AAAAAATA-TTAACAGTCATTAATTTTG----GAAAAGCACAGGTTT-GAAATA-GAGtttctctttgcttttttattctttcttttttttttt------------tGACTAGCTATTTTTG-G------------AAAGCATTTTCTTACCATTCATATA--AAACA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21426463 206 + 61074082 tgaaccaaaggcagacacttaactgacagagccacccaggtgccACAATATTTACTTGATTTTTAAACACAGAGAAAATATG----------------AAAAAAAATTTAACTGCTGCTCATCCTGAGTAGAGAAGCAGGGGTTTTACAATA-TAGTTTCTC----------TGTTCTTTTTTTTAAT-----------------GCTTAGATTTTTTTAAA------------AAAA----TTGTTGCTATCAAAATATGAAACA i canFam3.chr9 I 130 C 0 s dasNov3.JH570468 412394 194 - 852752 TAAACC---------CACTT--------------------------------------------------AGGGAAAATATGAAACTAACAAACAAACAAAAACCA-AAAACAACTACTAATCCTGGGTAAGGAAACACAGGTTTACAAACACTTTTTTCCA----------CGTTTTTTTTTTCTCTTTTCTTTAAGAAAAAATGCCAAGGTTTCTTTCTTTCTTTTTTTCAGAAAGTAGATTCTTGCTATTAAAACC--AAAGA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=346706.000000 s hg38.chr17_GL383564v2_alt 101923 45 + 133151 AAATACAAAAGAATTGGATGGAAAAGCA--AAGGCTAATCTCTTTAT s panTro5.chr17 16291078 45 + 83181570 AAATACAAAAGAATTGGATGGAAAAGCA--AAGGCTAATCTCTTTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195935 45 + 83442489 AAATACAAAAGAATTGGATGGAAAAGCA--AAGGCTAATCTCTTTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4030974 45 + 4267968 AAATACAAAAGAATTGGATGGAAAAGCA--AAGGCTAATCTCTTTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013581 45 - 2193130 aaatgcaaaagaattggatggaaaagca--aagGCTAATCTCTTTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084259 45 - 77216781 aaatgcaaaagaattggatggaaaagca--aagGCTAATCTCTTTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996521 45 - 80997621 aaatgcaaaagaattggatggaaaagca--aagGCTAATCTCTTTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054222 45 + 10377808 aaatgcaaaagaattggatggaaaagca--aagGCTAATCTCTTTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939184 45 - 8458610 TAATGGAAAAGAATTGGATGGAAAAGCA--AAGGCTAATCTCTTTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894774 45 + 75148670 AAATGCAAAAGAATTGGATGGAAAAGCA--AAGGCTAATCTCTTTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124219 45 + 4244037 aaatgcaaaagaattggatggaaaagca--aagGCTAATCTCTTTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146577 41 + 4569836 aaatgcaaaagaat----tggaaaagca--aaggctaaTCTCTTTAT i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998573 43 + 8555354 CAACACAAAAGAATAGAATGGAAAAGCA--A--GCTAATCTCTTTAT i proCoq1.NW_012135969v1 C 0 I 61 s otoGar3.GL873537 22815712 26 + 28711273 CAACAGAAAAGAAT-------------------GCTCATCTCTAT-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21426669 43 + 61074082 AAACACAAGAGAACTGGATGGAAAAGTG--A--GCTAATCCCTTCAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412588 47 - 852752 AAACACAAAAGAATTGGGTGGAAAAAAAGCAAAACTCTTCTCTTTAT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=386349.000000 s hg38.chr17_GL383564v2_alt 101968 52 + 133151 TTCAGCCACTAATAATTGTGGTAATCCTGGGTGTTAATCCTTGAAGTCTTCA s panTro5.chr17 16291123 52 + 83181570 TTCAGTCACTAATAATTGTGGTAATCCTGGGTGTTAATCCTTGAAGTCTTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16195980 52 + 83442489 TTCAGCCACTAATAATTGTGGTAATCCTGGGTGTTAATCCTTGAAGTCTTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031019 52 + 4267968 TTCAGCCACTAATAATTGTGGTAATCCTGGGTGTTAATCCTTGAAGTCTTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013626 52 - 2193130 TTCAGCCACTAATAATTGTGGTAATCCTGGGTGTTAAACCTTGAAGTCTTCA i nomLeu3.chrUn_GL397460_1 C 0 I 125 s rheMac8.chr16 30084304 52 - 77216781 TTCAGCCATTAATAATTGTGGTAATCCTGGGTGTTAAACCTTGAAGTCTTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996566 52 - 80997621 TTCAGCCATTAATAATTGTGGTAATCCTGGGTGTTAAACCTTGAAGTCTTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054267 52 + 10377808 TTCAGCCATTAATAATTGTGGTAATCCTGGGTGTTAAACCTTGAAGTCTTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939229 52 - 8458610 TTCAGCCATTAATAATTGTGGTAATCCTCGGTGTTAAACCTTGAAGTCTTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894819 52 + 75148670 TTCAGCCATTAATAATTGTGGTAATCCTGGGTGTGAAACCTTGAAGTCTTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124264 52 + 4244037 TTCAGCCATTAATAATTGTGGTAATCCTCGGTGTTAAACCTTGAAGTCTTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146618 52 + 4569836 TTCAGCCATTAATAATTGTGGTAATCCTGGGTGTTAAACCTTGAAGTCTTCA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22815738 34 + 28711273 TTCGGCCAGTGA------------------GTGTTAGAGCTTGAATTTGTAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21426712 52 + 61074082 TTCAGCCAATGATGACTGTGGTAATCCTGGGTATTAGACCTTGGAGTCTTAC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412635 51 - 852752 TTCAGCTAATGATAACAAT-GTAACCCTGGGTGTCAGACTTTGGAGTCTTAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998616 61 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=76779.000000 s hg38.chr17_GL383564v2_alt 102020 11 + 133151 TGGCATTGCTG s panTro5.chr17 16291175 11 + 83181570 TGGCATTGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196032 11 + 83442489 TGGCATTGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031071 11 + 4267968 TGGCATTGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30084356 11 - 77216781 TAGCATTGCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996618 11 - 80997621 TAGCATTGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054319 11 + 10377808 TAGCATTGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939281 11 - 8458610 GGGCATTGCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894871 11 + 75148670 TGGCATTGCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124316 11 + 4244037 GGGCATTGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146670 11 + 4569836 TGGCATTGCTG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22815772 11 + 28711273 CAGCATTGCTG i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21426764 11 + 61074082 TGGTGGTGCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412686 11 - 852752 TGACATTGCTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998616 61 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e nomLeu3.chrUn_GL397460_1 2013678 125 - 2193130 I a score=381028.000000 s hg38.chr17_GL383564v2_alt 102031 47 + 133151 TTTATCTGGTGGAAACTTATGACGCTTAGAATAGGCTGAGTAACCTG s panTro5.chr17 16291186 47 + 83181570 TTTATCTGGTGGAAACTTATGACGGTTAGAATAGGCTGAGTAACCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196043 47 + 83442489 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031082 47 + 4267968 TTTATCTGGTGGAAACTTATGACGCTTAGAATAGGCTGAGTAACCTG i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30084367 47 - 77216781 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996629 47 - 80997621 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054330 47 + 10377808 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939292 47 - 8458610 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894882 47 + 75148670 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124327 47 + 4244037 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146681 47 + 4569836 TTTATCTGGTGGAAACTTATGATGCTTAGAATAGGCTGAGTAACCTG i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998677 47 + 8555354 TTTACCTGGTGGAAACTTACGATGCTCCGAACAGGCTGGGTAACCTG i proCoq1.NW_012135969v1 I 61 I 108 s otoGar3.GL873537 22815783 47 + 28711273 TGTACCTGGTGGAAACTTATGATGCTAAGAATAGGCTGAGTAACCTG i otoGar3.GL873537 C 0 I 7 s canFam3.chr9 21426775 47 + 61074082 CTTACCTGATGGAAACACCTGGTGCTAAGGATAGGCTGAATAACCAG i canFam3.chr9 C 0 I 7 s dasNov3.JH570468 412697 40 - 852752 TGTGCTTGATGGAAACTTAT---GCTTAGAAAAGGCTGAGTAA---- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e nomLeu3.chrUn_GL397460_1 2013678 125 - 2193130 I a score=173404.000000 s hg38.chr17_GL383564v2_alt 102078 33 + 133151 TAATATCTTGTGTTTGACCCAGGACA-CCACAGT s panTro5.chr17 16291233 33 + 83181570 TAATATCTTGTGTTTGACCCAGGACA-CCACAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196090 33 + 83442489 TAATATCTTGTGTTTGACCCAGGACA-CCACAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031129 33 + 4267968 TAATGTCTTATGTTTGACCCAGGACA-CCACAGT i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30084414 33 - 77216781 TAACGTCTTGTGTTTGGCCCAGGACA-CCATAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996676 33 - 80997621 TAACGTCTTGTGTTTGGCCCAGGACA-CCATAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054377 33 + 10377808 TAACGTCTTGTGTTTGGCCCAGGACA-CCATAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939339 33 - 8458610 TAACGTCTTGTGTTTGGCCCAGGACA-CCACAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894929 33 + 75148670 TAACGTCTTGTGTTTGGCCCAGGACA-CCACAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124374 33 + 4244037 TAACGTCTTGTGTTTGGCCCAGGACA-CCACAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146728 33 + 4569836 TAACGTCTTGTGTTTGGCCCAGGACA-CCACAGT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22815837 34 + 28711273 AGAGTTCATGTGTTTGGTCCTGGACACCCACAGG i otoGar3.GL873537 I 7 I 4 s canFam3.chr9 21426829 28 + 61074082 TTCATTCTTGTATTTGATTCTGGCCA-TC----- i canFam3.chr9 I 7 C 0 s dasNov3.JH570468 412737 16 - 852752 ------------------CCAGGACACCCACATC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e nomLeu3.chrUn_GL397460_1 2013678 125 - 2193130 I a score=73374.000000 s hg38.chr17_GL383564v2_alt 102111 10 + 133151 CCCAGGCACA s panTro5.chr17 16291266 10 + 83181570 CTCAGGCACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196123 10 + 83442489 CCCAGGCACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031162 10 + 4267968 CCCAGGCACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013803 10 - 2193130 CCCAGGCACA i nomLeu3.chrUn_GL397460_1 I 125 C 0 s rheMac8.chr16 30084447 10 - 77216781 CCCAGGCACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996709 10 - 80997621 CCCAGGCACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054410 10 + 10377808 CCCAGGCACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939372 10 - 8458610 CCCAGGCACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894962 10 + 75148670 CCCAGGCACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124407 10 + 4244037 CCCAGGCACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146761 10 + 4569836 CCCAGGCACA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22815875 6 + 28711273 GCCAGG---- i otoGar3.GL873537 I 4 T 2520 s canFam3.chr9 21426857 10 + 61074082 CACAGCCACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412753 10 - 852752 CACAGCCACA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=9660.000000 s hg38.chr17_GL383564v2_alt 102121 2 + 133151 AA s panTro5.chr17 16291276 2 + 83181570 AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196133 2 + 83442489 AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031172 2 + 4267968 AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013813 2 - 2193130 AT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084457 2 - 77216781 AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996719 2 - 80997621 AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054420 2 + 10377808 AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939382 2 - 8458610 AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894972 2 + 75148670 AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124417 2 + 4244037 CA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146771 2 + 4569836 AA i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21426867 2 + 61074082 AG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412763 2 - 852752 AA i dasNov3.JH570468 C 0 T 709 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e otoGar3.GL873537 22815881 2520 + 28711273 T e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=14129.000000 s hg38.chr17_GL383564v2_alt 102123 8 + 133151 GTGGTTAA- s panTro5.chr17 16291278 8 + 83181570 GTGGTTAA- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196135 8 + 83442489 GTGGTTAA- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031174 8 + 4267968 GTGGTTAA- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013815 8 - 2193130 GTAGTTAA- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084459 7 - 77216781 GCGGTTA-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996721 7 - 80997621 GCGGTTA-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054422 7 + 10377808 GCAGTTA-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939384 7 - 8458610 GCGATTA-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894974 7 + 75148670 GCGGTTA-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124419 7 + 4244037 GCGGTTA-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146773 7 + 4569836 GCGGTTA-- i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21426869 8 + 61074082 ATGATGG-A i canFam3.chr9 C 0 T 882 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e dasNov3.JH570468 412765 709 - 852752 T e otoGar3.GL873537 22815881 2520 + 28711273 T e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=16687.000000 s hg38.chr17_GL383564v2_alt 102131 3 + 133151 TTT s panTro5.chr17 16291286 3 + 83181570 TTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196143 3 + 83442489 TTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031182 3 + 4267968 TTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013823 3 - 2193130 TTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084466 3 - 77216781 TTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996728 3 - 80997621 TTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054429 3 + 10377808 TTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939391 3 - 8458610 TTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894981 3 + 75148670 TTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124426 3 + 4244037 TTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146780 2 + 4569836 -TT i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e dasNov3.JH570468 412765 709 - 852752 T e canFam3.chr9 21426877 882 + 61074082 T e otoGar3.GL873537 22815881 2520 + 28711273 T e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=61670.000000 s hg38.chr17_GL383564v2_alt 102134 11 + 133151 TTTTCTTTTTT s panTro5.chr17 16291289 11 + 83181570 TTTTCTTTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196146 9 + 83442489 TTT--CTTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031185 11 + 4267968 TTTTCTTTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013826 11 - 2193130 TTTTCTGTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084469 11 - 77216781 TTTTCTTTTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996731 11 - 80997621 TTTTCTTTTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054432 11 + 10377808 TTTTCTTTTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939394 11 - 8458610 TTTTCTTTTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894984 11 + 75148670 TTTTCTTTTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124429 11 + 4244037 TTTTCTTTTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146782 11 + 4569836 TTTTCTTTTTT i colAng1.NW_012122154v1 C 0 C 0 s dasNov3.JH570468 412056 11 - 852752 TTTCCTTTACT i dasNov3.JH570468 T 709 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426877 882 + 61074082 T e otoGar3.GL873537 22815881 2520 + 28711273 T e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=107875.000000 s hg38.chr17_GL383564v2_alt 102145 18 + 133151 CCCATTAATGATCATTAG s panTro5.chr17 16291300 18 + 83181570 CCCATTAATGATCATGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196155 18 + 83442489 CCCATTAATGATCATTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031196 18 + 4267968 CCCATTAATGATCATTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013837 18 - 2193130 CCCTTTAATAATCATTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084480 18 - 77216781 CCCTTTAGTGAACATTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996742 18 - 80997621 CCCTTTAGTGAACATTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054443 18 + 10377808 CCCTTTAGTGAACATTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939405 18 - 8458610 CCCTTTAGTGAACATTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64894995 18 + 75148670 CCCTTTAGTGATCATTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124440 18 + 4244037 CCCTTTAGTGAACATTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146793 18 + 4569836 CCCTTTAGTGAAAATTAG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813361 18 + 28711273 CCTTTTAATGACCATTAG i otoGar3.GL873537 T 2520 C 0 s dasNov3.JH570468 412067 13 - 852752 -----CAATGAACATTAC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426877 882 + 61074082 T e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=526258.000000 s hg38.chr17_GL383564v2_alt 102163 74 + 133151 GTTAAGCTGTGACTGATAACAAGTGAAGACCTAGTAAAATAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT s panTro5.chr17 16291318 74 + 83181570 GTTAAGCTGTGACTGATAACAAGTGAAGACCTAGTAAAATAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196173 74 + 83442489 GTTAAGCTGTGACTGATAACAAGTGAAGACCTAGTAAAATAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031214 74 + 4267968 GTTAAGCTGTGACTGATAACAAGTGAAGACCTAGTAAAATAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013855 73 - 2193130 G-TAAGCTGTGACTGATAACAAGCAAAGACCTGGTAAAATAGTGAACTTCTTTGGTTGGACCAACAAGTTCTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084498 74 - 77216781 GTTAAGCTGTGACTGATTACAAGCGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996760 74 - 80997621 GTTAAGCTGTGACTGATTACAAGCGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054461 74 + 10377808 GTTAAGCTGTGACTGATTACAAGCGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939423 74 - 8458610 GTTAAGGTGTGACTGATTACAAGCGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895013 71 + 75148670 GTTAAGCTGTGACTGATCACAAGCGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGAC---CGAGTTCTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124458 74 + 4244037 GTTAAGGTGTGACTGATTACAAGCGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146811 74 + 4569836 GTTAAGCTGTGACTGATCACAAGTGAAGACCTGCTAAAACAGTGAACTTCTTTGGTTGGACCAACGAGTTCTAT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813379 73 + 28711273 CTTAAGCTGTAAGTGAGAATAAGTGAAGACCTGGTATAAAAGTGACCCTC-TTGGTGGGACCAAGGAGTTCTTT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21425995 70 + 61074082 ATTAAATTGTGACTAACAGTAAATGAAGACCTGGTAA---AGTAAATCTC-TTGGTTGAACCAATCAGTTCTTT i canFam3.chr9 T 882 C 0 s dasNov3.JH570468 412080 74 - 852752 ATTACTCTGTGTCTGATGACAACTGAAGAGCTGTTGAAAAAAATGACCCCCTTATTTGAACCAAGGAGATCTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075354 0 - 122082543 C e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=602994.000000 s hg38.chr17_GL383564v2_alt 102237 74 + 133151 CAAACTCACACAAATTGTATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCATGTTTATGTTTGTATTT s panTro5.chr17 16291392 74 + 83181570 CAAACTCACACAAATTGTATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCATGTTTATGTTTGTATTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196247 74 + 83442489 CAAACTCACACAAATTGTATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCATGTTTATGTTTGTATTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031288 74 + 4267968 CAAACTCACACAAATCGTATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCATGTTTATGTTTGTATTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2013928 74 - 2193130 CAAACTCACACAAATCATATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCATGTTTATGTTTGTATTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084572 74 - 77216781 CAAACTCACACAAATGGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGTCAGTTCATGTTTATGTTTGTATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996834 74 - 80997621 CAAACTCACACAAATGGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGTCAGTTCATGTTTATGTTTGTATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054535 74 + 10377808 CAAACTCACACAAATGGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGTCAGTTCATGTTTATGTTTGTATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939497 74 - 8458610 CAAACTCACACAAATTGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCACGTTTATGTTTGTATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895084 74 + 75148670 CAAACTCACACAAATTGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCATGTTTATGTTTGTATTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124532 74 + 4244037 CAAACTCACACAAATTGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGTCAGTTCATGTTTATGTTTGTATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146885 74 + 4569836 CAAACTCACACAAATTGCATATCCAATTAAAG-AAGTTGATTGA-AA-AATGCCAGTTCACATTTATGTTTGTATTT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813452 75 + 28711273 CAAACGCACACTAATTGCACATCCAATTAAAT-CAGTCAATTGACAA-AATACCAGTTTAAGTTTATGGTTAGATTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075354 74 - 122082543 CAATCTTATATTAATTACACACTCAGTTAAAT-AAATAGATTGA-AA-AATATCTGCTCATGGATCTACCAAGATTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21426065 74 + 61074082 TAGACTCATACCAATTGCATATCCAATTACAT-AAGAAGATTAA-AAGAATACTAGTTACTGTTTACTCCTACATT- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 412154 75 - 852752 CAAACACACACTAATTACATATCCAATTAAAACGAATCGGTCGA-AT-AAGACTAGTTAATGTTTATGTCTACATTT i dasNov3.JH570468 C 0 I 625 e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=102011.000000 s hg38.chr17_GL383564v2_alt 102311 24 + 133151 AAAAAAA-T----------------------------CTTAGACTTGTATATA s panTro5.chr17 16291466 24 + 83181570 AAAAAAA-T----------------------------CTTAGACTTGTATATA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196321 24 + 83442489 AAAAAAA-T----------------------------CTTAGACTTGTATATA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031362 23 + 4267968 AAAAAAA-T----------------------------CTTAGA-TTGTGTATA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014002 24 - 2193130 AAAAAAA-C----------------------------CTTAGACTTGTATATA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084646 23 - 77216781 AAAAAAA-A-----------------------------GTAGACTTGCATATA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996908 23 - 80997621 AAAAAAA-A-----------------------------GTAGACTTGCATATA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054609 24 + 10377808 AAAAAAA-A----------------------------CGTAGACTTGCATATA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939571 25 - 8458610 TAAAAAA-AA---------------------------TGTAGACTTGCATATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895158 24 + 75148670 AAAAAAACC-----------------------------ATAGACTTGCATATA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124606 23 + 4244037 TAAAAAA-A-----------------------------GTAGACTTGCATATA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146959 24 + 4569836 AAAAAAC-A----------------------------CGTAGACTTGCATATA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813527 23 + 28711273 TAAAAAA-T-----------------------------CTAGACTTATATATG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075428 52 - 122082543 TAAAAAC-AAAACAACCCCCAAACCAAAAACCAAAACCTTATATTTGTATATT i mm10.chr11 C 0 C 0 s canFam3.chr9 21426139 24 + 61074082 AAAAAAA-T----------------------------CTTGGACATGTATAGA i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e dasNov3.JH570468 412229 625 - 852752 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=317092.000000 s hg38.chr17_GL383564v2_alt 102335 44 + 133151 CATTTAAAAAACCATAAAATGCTAGAAGGACATACATATGAAAT s panTro5.chr17 16291490 44 + 83181570 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196345 44 + 83442489 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031385 44 + 4267968 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014026 44 - 2193130 CATTTACAAAACCATAAAATGCTAGAAGGACATATATATGAAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084669 44 - 77216781 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996931 44 - 80997621 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054633 44 + 10377808 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939596 44 - 8458610 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895182 44 + 75148670 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124629 44 + 4244037 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2146983 44 + 4569836 CATTTACAAAACCATAAAATGCTAGAAGGACATACATATGAAAT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813550 44 + 28711273 CCTTTATAAAATCATGAGATACTAGAATGATGTATATATACAAA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22075480 32 - 122082543 CATTTATAAAGC--TACAATGCt------atgtatgtatg---- i mm10.chr11 C 0 C 0 s canFam3.chr9 21426163 44 + 61074082 CATTTATAAAAGTACAAAGTGCTAACAGAATGTACCTATTAAAT i canFam3.chr9 C 0 I 889 s dasNov3.JH570468 412854 17 - 852752 CCTTTTAAAAAATATAA--------------------------- i dasNov3.JH570468 I 625 C 0 e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=155797.000000 s hg38.chr17_GL383564v2_alt 102379 28 + 133151 GTATGC-------------------------------------ATTAATGTATATTAAATGTATG s panTro5.chr17 16291534 28 + 83181570 GTATGC-------------------------------------ATTAATGTATATTAAATGTGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196389 28 + 83442489 GTATGC-------------------------------------ATTAATGTATATTAAATGTATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031429 28 + 4267968 GTATGC-------------------------------------ATTAATGTATATTAAATGTATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014070 65 - 2193130 GTATGCACtaatgtatattaaatgtattaatgtattaatgtatattaatgtatattaaatgtatG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084713 28 - 77216781 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27996975 28 - 80997621 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054677 28 + 10377808 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939640 28 - 8458610 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895226 28 + 75148670 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124673 28 + 4244037 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147027 28 + 4569836 TTATGC-------------------------------------ATTAATGTATATTAAATGTATG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22813594 24 + 28711273 ATGTGT-----------------------------------------ACATATATAAAATTCATG i otoGar3.GL873537 C 0 I 2263 s mm10.chr11 22075512 27 - 122082543 -tgtgc-------------------------------------atgtatctatatatgattcatc i mm10.chr11 C 0 C 0 s dasNov3.JH570468 412871 22 - 852752 --CTGC-------------------------------------TTTATTACA----AGAAGTATG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426207 889 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=224469.000000 s hg38.chr17_GL383564v2_alt 102407 43 + 133151 TCCTTCTGGCATTTTATGGTT--TTGTAAATGTA-TACACAAATCT s panTro5.chr17 16291562 43 + 83181570 TCCTTCTGGCATTTTATGGTT--TTGTAAATGTA-TACACAAATCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196417 43 + 83442489 TCCTTCTGGCATTTTATGGTT--TTGTAAATGTA-TACACAAATCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031457 43 + 4267968 TCCTTCTGGCATTTTATGGTT--TTGTAAATGTA-TACACAAGTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014135 43 - 2193130 TCCTTCTAGCATTTTATGGTT--TTGTAAATGTA-TACACAAGTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084741 43 - 77216781 TCCTTCTAGCATTTTATGGTT--TTGCAAATGTA-TATACAACTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997003 43 - 80997621 TCCTTCTAGCATTTTATGGTT--TTGCAAATGTA-TATACAACTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054705 43 + 10377808 TCCTTCTAGCATTTTATGGTT--TTGCAAATGTA-TATACAACTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939668 43 - 8458610 TCCTTCTAGCATTTTATGGTT--TTGCAAATGTA-TATGCAACTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895254 43 + 75148670 TCCTTCTAGCATTTTATGGTT--TTGTAAATGTA-TATACAACTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124701 43 + 4244037 TCCTTCTAGCATTTTATGGTT--TTGCAAATGTA-TATGCAACTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147055 43 + 4569836 TCCTTCTAGCATTTTATGGTT--TTGTAAATGTA-TATACAACTCT i colAng1.NW_012122154v1 C 0 C 0 s mm10.chr11 22075539 19 - 122082543 ----------------tattt--atatatatata-tat-------- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 412893 26 - 852752 -----------------GGTTTCTTTTGAAAGCACCACACAAA--- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426207 889 + 61074082 I e otoGar3.GL873537 22813618 2263 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=103710.000000 s hg38.chr17_GL383564v2_alt 102450 17 + 133151 AAGTGATGGC-AATGACA s panTro5.chr17 16291605 17 + 83181570 AAGTGATGGC-AATGACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196460 17 + 83442489 AAGTGATGGC-AATGACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031500 17 + 4267968 AAGTGATGGC-AATGACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014178 17 - 2193130 AAGTGATGGC-AATGACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084784 18 - 77216781 AAGTGATGGCAAATGACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997046 18 - 80997621 AAGTGATGGCAAATGACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054748 18 + 10377808 AAGTGATGGCAAATGACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939711 18 - 8458610 AAGTGATGGCAAATGATA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895297 18 + 75148670 AAGTGATGGCAAATGACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124744 18 + 4244037 AAGTGATGGCAAATGACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147098 18 + 4569836 AAGTGATGGCAAATGACA i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22815881 18 + 28711273 AATTGATGGCAGATGACA i otoGar3.GL873537 I 2263 C 0 s mm10.chr11 22075558 17 - 122082543 atataATGTT-AATGACA i mm10.chr11 C 0 I 1614 s dasNov3.JH570468 412919 1 - 852752 -----------------A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426207 889 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=264722.000000 s hg38.chr17_GL383564v2_alt 102467 41 + 133151 TTTGTTCAGACCCCTCCAATAAGGTATTTGTATAAAGGTAC s panTro5.chr17 16291622 41 + 83181570 TTTGTTCAGACCCCTCCAATAAGGTATTTGTATAAAGGTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196477 41 + 83442489 TTTGTTCAGACCCCTCCAATAAGGCATTTGTATAAAGGTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031517 41 + 4267968 TTTGTTCAGACCCCTCCAATAAGGTATTTGTATAAAGGTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014195 41 - 2193130 TTTGTTCAGACCCCTCCAATAAGGTATTTGTATAAAGGTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084802 41 - 77216781 TTTGTCCAGATCCCTCCAATAAGGTATTTGTGTGAAGGTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997064 41 - 80997621 TTTGTCCAGATCCCTCCAATAAGGTATTTGTGTGAAGGTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054766 41 + 10377808 TTTGTCCAGATCCCTCCAATAAGGTATTTGTGTGAAGGTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939729 41 - 8458610 TTTGTCCAGATCCCTCCAATAAGGTATTTGTGTAAAGGTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895315 41 + 75148670 TTTGTCCAGATCCCTCTAATAAGGTATTTGTGTAAAGGTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124762 41 + 4244037 TTTGTCCAGATCCCTCCAATAAGGTATTTGTGTGAAGGTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147116 41 + 4569836 TTTGTCCAGATCCCTCCAATAAGGTATTTGTGTAAAGGTAT i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22815899 41 + 28711273 TTTGTCTATGCTCCTCCAATAAGGTATTTGTGTAAAGGTAT i otoGar3.GL873537 C 0 I 1 s dasNov3.JH570468 412920 22 - 852752 TTTGTTCA--------taatga-gtgttttt---------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2998724 108 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426207 889 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=482316.000000 s hg38.chr17_GL383564v2_alt 102508 77 + 133151 TGTAATTTTCATACTTACTATGATAAGGATAAGG----TTAAGCGAGTCAAAGGTCACTTTATAAAAAATCTAGCTGCTTT s panTro5.chr17 16291663 77 + 83181570 TGTAATTTTCATACTTACTATGATAAGGGTAAGG----TTAAGCGAGTCAAAGGTCACTTTATAAAAAATCTAGCTGCTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196518 77 + 83442489 TGTAATTTTCATACTTACTATGATAAGGATAAGG----TTAAGCGAGTCAAAGGTCACTTTATAAAAAATCTAGCTGCTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031558 77 + 4267968 TGTAATTTTCATACTTACTATGATAAGGATAAGG----TTAAGCGAGTCAAAGGTCACTTTATAAAAAATGTAGCTGCTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014236 71 - 2193130 TGTGATTTTCATACTTACTATGA------TAAGG----TTAAGTGAGTCAAAGGCCACTTTATAAAAAATCTAACTGCTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084843 76 - 77216781 TGTGATTTTCATACTTACTATGATAAGGATAAGG----TCAGGTGAGTCAAACGTCACTTTATAAAAAG-CTAACTGCTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997105 76 - 80997621 TGTGATTTTCATACTTACTATGATAAGGATAAGG----TCAGGTGAGTCAAACGTCACTTTATAAAAAG-CTAACTGCTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054807 77 + 10377808 TGTGATTTTCATACTTACTATGATAAGGATAAGG----TCAGGTGAGTCAAACGTCACTTTATAAAAAACCTAACTGCTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939770 77 - 8458610 TGTGATTTTCATACTTACTATGATAAGGATAAGG----TCAGGTGAGTCAAAGGTCACTTTATAAAAAACCTAACTGCTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895356 77 + 75148670 TGTGATTTTCATACTTACTATGATAAGGATAAGG----TCAGGTGAGTCAAACGTCACTTTATAAAAAACCTAACTGCTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124803 77 + 4244037 TGTGATTTTCATACTTACTATGATAAGGATAAGG----TCAGGTGAGTCAAAGGTCACTTTATAAAAAACCTAACTGCTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147157 77 + 4569836 TGTGATTTTCATACTTCCTATGATAAGGATAAGG----TCGGGGGAGTCAAAGGTCACTTTATAAAAAACCTAACTGCTTT i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998832 81 + 8555354 TGTAAATTTCATAGTTACTATGATAAGGACAATGAAGGTCAAGGGATTCAAAGGCCACTTTATAAAAAATCTAACTGCTTT i proCoq1.NW_012135969v1 I 108 C 0 s otoGar3.GL873537 22815941 75 + 28711273 TGTAATTTTCATACTTAGTATGGTAAGAGCAAAG------AAGGGGGTCTAAGGCCACTTTAGCAAACATCTAAATGCTTT i otoGar3.GL873537 I 1 C 0 s dasNov3.JH570468 412942 14 - 852752 -------------ccttctgtgatgga------------------------------------------------------ i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e micMur3.chr16 35910955 651 - 65901067 I e canFam3.chr9 21426207 889 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=342988.000000 s hg38.chr17_GL383564v2_alt 102585 49 + 133151 TTTACAATAATTTAAAGCTCTCCTGGAAACACTA--TACAAGGTTTAAACA s panTro5.chr17 16291740 49 + 83181570 TTTACAATAATTTAAAGCTGTCCTGGAAACACTA--TACAAGGTTTAAACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196595 49 + 83442489 TTTACAATAATTTAAAGCTCTCCTGGAAACACTA--TACAAGGTTTAAACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031635 49 + 4267968 GTTACAATAATTTAAAGCTCTCCTGGAAACACTA--TACAAGGTTTAAACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014307 49 - 2193130 GTAACAATAATTTAAAGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084919 49 - 77216781 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997181 49 - 80997621 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054884 49 + 10377808 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939847 49 - 8458610 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895433 49 + 75148670 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124880 49 + 4244037 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTA--TACAAGGTTTAAACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147234 49 + 4569836 GTTACAATAATTTAAGGCTCTCCTGGAAGCACTG--TACAAGGTTTAAACA i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2998913 49 + 8555354 AGCACAAGAATTTGGGGTTCTCCTGGAAGCACCA--TGCAAGATTTAAACA i proCoq1.NW_012135969v1 C 0 I 133 s otoGar3.GL873537 22816016 48 + 28711273 AGCACAAGAATTT-GGGTTCTCTTGGAAGTACGA--TACAAGACATGAGGG i otoGar3.GL873537 C 0 I 2 s canFam3.chr9 21427096 42 + 61074082 TGTACACTCATTT-------CCATGGAAGCACTG--CATGAGATTTATGTA i canFam3.chr9 I 889 I 2 s dasNov3.JH570468 412956 22 - 852752 ---------------------ctgggaagcaccatttccaaag-------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=814011.000000 s hg38.chr17_GL383564v2_alt 102634 133 + 133151 ATGAGTATTTAAACAATGAGCCCCTCTATGATGGACTGGGAAGCACCATGTGTCAAGAGGAGCATGGCAATGCTATTAACC--ATAGAAGCATCAAT-----AAAATATGTGTAT-GTTGCCAATGAGGACCACATTTGGG s panTro5.chr17 16291789 132 + 83181570 ATGAGTATTTAAACAATGAGCCCCTCTATGATGGACTGGGAAGCACCATGTG-CAAGAGGAGCATGGCAATGCTATTAACC--ATAGAAGCATCAAT-----AAAATATGTGTAT-GTTGCCAATGAGGACCACATTTGGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196644 133 + 83442489 ATGAGTATTTAAACAATGAGCCCCTCTATGATGGACTGGGAAGCACCATGTGTCAAGAGGAGCATGGCAATGCTATTAACC--ACAGAAGCATCAAT-----AAAATATGTGTAT-GTTGCCAATGAGGACCACATTTGGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031684 133 + 4267968 ATGAGTATTTAAACAATGAGCCCCTCTATGATGGACTGGGAAGCACCATGTCTCAAGAGGAGCATGGCAATGCTATTAACC--ATAGAAGCATCAAT-----AAAATATGTGTAT-GTTGCCAATGAGGACCACATTTGGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014356 124 - 2193130 ATGAGTATTTC---------CCCCTCTATGATGGACTGGGAAGCACCATGTCTCAAGAGGAGCATGGCAATGCTATTAACC--ATAGAAGCATCAAT-----AAAATATGCATAT-GTTACCAATGAGGACCACATTTGGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30084968 124 - 77216781 ATGAGTATTTC---------CCCCTCTCTGATGGACTGGGATGCACTATGTCTCAAGGGGAGTATGGCGATGCTATTAACC--ATAGAAGCATCAAT-----AAAATACGTGTGT-GTTACCAATGGGGACCACATTTGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997230 124 - 80997621 ATGAGTATTTC---------CCCCTCTCTGATGGACTGGGATGCACTATGTCTCAAGGGGAGTATGGCGATGCTATTAACC--ATAGAAGCATCAAT-----AAAATACGTGTGT-GTTACCAATGGGGACCACATTTGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2054933 124 + 10377808 ATGAGTATTTC---------CCCCTCTCTGATGGACTGGGATGCACTATGTCTCAAGGGGAGCATGGCTATGCTATTAACC--ATAGAAGCATCAAT-----AAAATACGTGTGT-GTTACCAATGGGGACCACATTTGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1939896 124 - 8458610 ATGAGTATTTC---------CCCCTCTCTGATGGACTGGGATGCACTATGTCTCAAGGGGAGCATGGCGATGCTATTAACC--ATAGAAGCATCAAT-----AAAATACGTGTGT-GTTACCAATGGGGACCACATTTGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895482 124 + 75148670 ATGAGTATTTC---------CCCCTCTATGATGGACTGGGATGCACTATGTCTCAAGGGGAGCATGGCGATGCTATTAACC--ATAGAAGCATCAAT-----AAAATACGTGTAT-GTTACCAATGGGGACCACATTTGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2124929 124 + 4244037 ATGAGTATTTC---------CCCCTCTCTGATGGACTGGGATGCACTATGTCTCAAGGGGAGCATGGCGATGCTATTAACC--ATAGAAGCATCAAT-----AAAATACGTGTGT-GTTACCAATGGGGACCACATTTGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147283 124 + 4569836 ATGAGTATTTC---------CCCCTCTCTGATAGACTGGGATGCACCATGTCTCAAGGGGAGCATGGCGATGCTATTAACC--ATAGAAGCATCAAT-----AAAACACGTGTAT-GTTACCAACGGGGACCACATTTGGG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22816066 132 + 28711273 ATGAGTATGTC---------CCCCTCCATAAGAGACTGGGGAGGACCACATCTAAAGAGGAGCATGGTGATGTGATGCCCTCAATGAGAGCATGTACTGTTGATAACAAGTGCATAGTTACCAACAATGACTTCCTCAGGG i otoGar3.GL873537 I 2 I 223 s canFam3.chr9 21427140 125 + 61074082 ATGAGTACATC---------CTTCTCTCTGATGGACTGGGAAGCACCATATCCAAACACAAATATGTACATGCTCTCAACC--AGAAAAGCATCAAT-----AAGATAAGTGTATGGTTGCCAAGAGGGACCACCTGTGGG i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 412978 77 - 852752 --------------------------------------agaagtac-------------------agaaatgctcccaatt--agggcagcatcaac-----aaaacaagtgtgtggttaccaagggtgactgcattCGAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2998962 133 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=60838.000000 s hg38.chr17_GL383564v2_alt 102767 11 + 133151 TTGGTTCGTTT s panTro5.chr17 16291921 11 + 83181570 TTGGTTCGTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196777 11 + 83442489 TTGGTTCGTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031817 11 + 4267968 TTGGTTCGTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014480 11 - 2193130 TTGGTTCGTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085092 11 - 77216781 TCGGTTCATTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997354 11 - 80997621 TCGGTTCATTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055057 11 + 10377808 TCGGTTCATTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940020 11 - 8458610 TCGGTTCATTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895606 11 + 75148670 TCGGTTCATTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125053 11 + 4244037 TCGGTTCATTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147407 11 + 4569836 TCAGTTCATTT i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21427265 11 + 61074082 TATGCAAGTTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 413055 11 - 852752 CAGGTGAGTTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2998962 133 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=335621.000000 s hg38.chr17_GL383564v2_alt 102778 44 + 133151 CTC--TAAGATATCTG-TCTAGCCGATTCATTGTCTCAGGACATTTT s panTro5.chr17 16291932 44 + 83181570 CTC--TAAGATATCTG-TCTAGCTGATTCATTGTCTCAGGACATTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196788 44 + 83442489 CTC--TAAGATATCTG-TCTAGCTGATTCATTGTCTCAGGACATTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031828 44 + 4267968 CTC--TAAGATATCTG-TCTAGCTGATTCATTGTCTCAGGACATTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014491 44 - 2193130 CTC--CAAGATATCTG-TCTAGCTGATTCATTGTCTTAGGATATTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085103 46 - 77216781 CTCTTTAAGATATCTG-TCTAGCGGATTCATTGTCTTAGGATATTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997365 46 - 80997621 CTCTTTAAGATATCTG-TCTAGCGGATTCATTGTCTTAGGATATTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055068 46 + 10377808 CTCTTTAAGATATCTG-TCTAGCGGATTCATTGTCTTAGGATATTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940031 46 - 8458610 CTCTTTAAGATATCTG-GCTAGCGGATTCATTGTCTTAGGATATTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895617 46 + 75148670 CTCTTTAAGATATCTG-TCTAGCGGATTCATTGTCTTAGGATATTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125064 46 + 4244037 CTCTTTAAGATATCTG-TCTAGCGGATTCATTGTCTTAGGATATTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147418 44 + 4569836 CTC--TAAGATATCTG-TCAAGCGGATTCATTGTCTTAGGATATTTT i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 2999095 44 + 8555354 CTC--TACGATACCTG-TCTAGTTGATTCGTTGTCTTAGGACATTTT i proCoq1.NW_012135969v1 I 133 I 97 s canFam3.chr9 21427276 45 + 61074082 GTC--TAAGATATCTGATCTCATGAATTCATGGTCTTAGGAAACTTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 413066 44 - 852752 CTC--TAAGACAACAG-TCTAGCTGATTCATTGTCCTAGGAAACTTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e micMur3.chr16 35910955 651 - 65901067 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=689957.000000 s hg38.chr17_GL383564v2_alt 102822 99 + 133151 GTTGCCCAGGATGCAGTTTTCTCTTTCAAATACACATCCCTGATTTTTACTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA s panTro5.chr17 16291976 99 + 83181570 GTTGCCCAGGATGCAGTTTCCTCTTTCAAATACACATCCCTGATTTTTACTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196832 99 + 83442489 GTTGCCCAGGATGCAGTTTCCTCTTTCAAATACACATCCCTGATTTTTACTGAGAATATCTTCTAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031872 99 + 4267968 GTTGCCCAGGATGCAGTTTCCTCTTTCAAATACACATCCCTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014535 99 - 2193130 GTTGCCCAGGATGGACTTTCCTCTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085149 99 - 77216781 GCTGTCCAGGATGGAGTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997411 99 - 80997621 GCTGTCCAGGATGGAGTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055114 99 + 10377808 GCTGTCCAGGATGGAGTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940077 99 - 8458610 GCTGCCCAGGATGGAGTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895663 99 + 75148670 GCTGCCCAGGATGGAGTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125110 99 + 4244037 GCTGCCCAGGATGGAGTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGAATATCTTCCAATGATATTT-TCTTTGTCAGAAATTTTGCAAATAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147462 99 + 4569836 TCTGCCCAGGATGGACTTTCCTTTTTCAAATACACATCCTTGATTTTTATTGAGCATGTCTTCCAATGATATTT-TCTTTGTCGGAAATTTTGCAAATAA i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21427321 96 + 61074082 CCTGCTCAAAATGGAGTTTCTTTTTTCAAATGCAAATCCTTGATTTTAACTAAGAATATCTTCTGGCTGGATCT---TTTGTCAGAAATTTTAC-AATAA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 413110 96 - 852752 CCTACTCAGAATGGAGTTT----TTTCAAATACAAATCTTTGATTTTTATTGAGAATAACTGCCAGTGGCATCCCTCCTGGTCCAAAATTTTACCAATAG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999139 97 + 8555354 I e micMur3.chr16 35910955 651 - 65901067 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=169336.000000 s hg38.chr17_GL383564v2_alt 102921 22 + 133151 AAGTAGAAAGAAAAAAGGGATT s panTro5.chr17 16292075 22 + 83181570 AAGTAGAAAGAAAAAAGGGATT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196931 22 + 83442489 AAGTAGAAAGAAAAAAGGGATT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031971 22 + 4267968 AAGTAGAAAGAAAAAAGGGATT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014634 22 - 2193130 AAGTAGAAAGAAAAAAGGGATT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085248 22 - 77216781 AAGTAGAAAGAGAAAAGGGATT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997510 22 - 80997621 AAGTAGAAAGAGAAAAGGGATT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055213 22 + 10377808 AAGTAGAAAGAGAAAAGGGATT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940176 22 - 8458610 AAGTAGAAAGAGAAAAGGGATT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895762 22 + 75148670 AAGTAGAAAGAGAAAAGGGATT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125209 22 + 4244037 AAGTAGAAAGAGAAAAGGGATT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147561 22 + 4569836 AAGTAGAAAGAGAAAAGGGAGT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35911606 22 - 65901067 AAGCAGAAAGAAAAATGGAGTT i micMur3.chr16 I 651 C 0 s proCoq1.NW_012135969v1 2999236 22 + 8555354 AAGCAGAAAGAAAAATGGGGTT i proCoq1.NW_012135969v1 I 97 C 0 s canFam3.chr9 21427417 18 + 61074082 AAGTAGAAAG----GAgggatc i canFam3.chr9 C 0 I 707 s dasNov3.JH570468 413206 13 - 852752 GAGTAATGAGTGC--------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=368496.000000 s hg38.chr17_GL383564v2_alt 102943 37 + 133151 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT s panTro5.chr17 16292097 37 + 83181570 TGTGGAGAGAGAGTCCCAAGATGGCAGGTGATGCAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196953 37 + 83442489 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4031993 37 + 4267968 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014656 37 - 2193130 TGTGGAGAGAAAGTTCCAAGATGGCAGGCGATGGAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085270 37 - 77216781 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997532 37 - 80997621 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055235 37 + 10377808 AGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940198 37 - 8458610 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895784 37 + 75148670 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125231 37 + 4244037 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147583 37 + 4569836 TGTGGAGAGAGAGTTCCAAGATGGCAGGTGATGGAGT i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35911628 37 - 65901067 TGTAGAGGGAGAGTTCCAAGATGCCAGGTGATGGAGT i micMur3.chr16 C 0 I 4144 s proCoq1.NW_012135969v1 2999258 37 + 8555354 TGTGGAGGGAGAGTTCCAAGATGCCGGGTGATGGAGT i proCoq1.NW_012135969v1 C 0 I 2980 s canFam3.chr9 21428142 37 + 61074082 TGGAGAGAGAGAGTTTGAAGATGGCAGGTAATGGAAC i canFam3.chr9 I 707 C 0 s dasNov3.JH570468 413219 37 - 852752 TGTGGTGGGAGGATTCCAAGATGTCAGGTAATGGGGT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=1806305.000000 s hg38.chr17_GL383564v2_alt 102980 275 + 133151 TTATGGTGGCATATGTGCCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGACCATCTTTTCCAGTCCTTACACCACTCTGACGTTAGT-AACTCTAAAGCATTGCA-TACGTTTGCCTTCAGGGCTAGCTGAGGGGGCTTCTTTCCTCTCTCCTTCAAGAAAGGAGAGAGGGAAGAGGGTCTCTTGCTTCTCTACTCCTAG-CTTCTTGCTGATGGGAAA s panTro5.chr17 16292134 275 + 83181570 TTATGGTGGCATGTGTGCCCCAAAC--AAAATGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTAAACATGGACCATCTTTTCCAGTCCTTACATCACTCTGACGTTAGT-AACTCTAAAGCATTGCA-TACGTTTGCCTTCAGGGCTAGCTGAGGGGGCTTCTTTCCTCTCTCCTTCAAGAAAGGAGAGAGGGAAGAGGGTCTCTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16196990 275 + 83442489 TTATGGTGGCATGTGTGCCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGACCATCTTTTCCAGTCCTTACACCACTCTGACGTTAGT-AACTCTAAAGCATTGCA-TATGTTTGCCTTCAGGGCTAGCTGAGGGGGCTTCTTTCCTCTCTCCTTCAAGAAAGGAGAGAGGGAAGAGGGTCTCTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4032030 275 + 4267968 TTATGGTGGCATGTGTGCCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGACCATCTTTTCCAGTCCTTACACCACTCTGACGTTAGT-AACTCTAAAGCATTGCA-TACGTTTGCCTTCAGGGCTAGCTGAGGGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGAGAGGGAAGAGGGTCTCTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014693 275 - 2193130 TTATGGTGGCATGTATGCCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGACCATCTTGTCCAGTCCTTACACCACTCTGACAGTAGT-AACTCTAAAGCATTGCA-TACGTTTGCCTTCAGGGCTAGCTGAGAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGAGAGGGAAGAGGGCCTCTTGCTTCTCTCCTCCCAG-CTTCTTGCTGATGGGAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085307 274 - 77216781 TTATGGTGGCATGTGTACCCCAAAC--AAAACGCAGGCCTGGGAAAGGCCTGGATAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGATCATCTTTTCCAGTCCTTACACCACTCCGATGTTAGT-AACTCTAAAGTATT-CA-TACGTTTGCCTTCAGGGCTAGCCGACAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGACAGGGAAGAGGGCCTCTTGCTTTTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997569 274 - 80997621 TTATGGTGGCATGTGTACCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGATAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGATCATCTTTTCCAGTCCTTACACCACTCCGGTGTTAGT-AACTCTAAAGTATT-CA-TACGTTTGCCTTCAGGGCTAGCCGACAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGACAGGGAAGAGGGCCTCTTGCTTTTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055272 274 + 10377808 TTATGGTGGCATGTGTACCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGATAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGATCATCTTTTCCAGTCCTTACACCACTCCGATGTTAGT-AACTCTAAAGTATT-CA-TACGTTTGCCTTCAGGGCTAGCCGACAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGACAGGGAAGAGGGCCTCTTGCTTTTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940235 274 - 8458610 TTATGGTGGCATGTGTACCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGGGAGGGAGTGTGGATTCAACATGGATCATCTTTTCCAGTCCTTACACCACTCCGATGTTAGT-AACTCTAAAGTATT-CA-TACGTTTGCCTTCAGGGCTAGCCGAGAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGACAGGGAAGAGGGCCTCTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64895821 274 + 75148670 TTATGGTGGCATGTGTACCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAACGGGAGGGAGTGTGGATTTAACATGGATCATCTTTTCCAGTCCTTACACCACTCTGATGTTAGT-AACTCTAAAGTATT-CA-TACGTTTGCCTTCAGGGCTAGCCAAGAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGACAGGGAAGAGGGCCTCTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125268 274 + 4244037 TTATGGTGGCATGTGTACCCCAAAC--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCTTTTCCTGGAAATAGGAGAC-TGGGAATGAGAGGGAGTGTGGATTCAACATGGATCATCTTTTCCAGTCCTTACACCACTCCGATGTTAGT-AACTCTAAAGTATT-CA-TACGTTTGCCTTCAGGGCTAGCCGAGAGGGCTTCTTTCCTCTCTCCTTCCAGTAAGGAGACAGGGAAGAGGACCACTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147620 275 + 4569836 TTATGGTGGCATGTGTACCCCAAAT--AAAACGCAGGCCTGGGAAGGGCCTGGACAGCATTTCCTGGAAATAGGAGAC-TGGGAACGGGAGGGAGTGTGGATTCAACATGGATCATCTTTTCCAGTCCTTACACCACTCTGATGTTAGT-AACTCTAAAGTATTGCA-TACGTTTGCCTTCAGGGCTAGCCGAGAGGGCTTCTTTCCTCTCTCCTTCAAGTAAGGAGAGAGGGAAGAGGGCCTCTTGCTTCTCTCCTCCTAG-CTTCTTGCTGATGGGAAA i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21428179 222 + 61074082 TGGTGGTGGCATGTATGCTTCAAACATAAAATACAGGCCTGGGAAGA-----------TTTTCCTGGAAATAGGAGAC--------------AAGTGTGCATTCAGCATGGACCATCTTTTCTGACTTTCACACTTCTCTGACTTCAAT-AAGCCAGAGGTATTGCATTAAATTTTCCCTCATGGCCAGCTAAGAGGGCT--TGTCCTCCTTCCTTCAAATAA------------------------------TTCCCCTAA-GTTCTTGCTAATGAGTAA i canFam3.chr9 C 0 I 10173 s dasNov3.JH570468 413256 221 - 852752 CTGTGGTGGCACATATGGACCAAACATAAAATACAGGTCTTGG--------------------------GTAGGAGACTTGGGAATGGAGGTGAGTG-GGATTCAACACCAACAATCCCTTCTGGTCCTCACACCTCCCTGACTTTAATAAACCCTTAAGTACTGAATTAAGTTTGCATTTAGGGCTAGCAGAGAGGGC---CTTTCACTTTCCTTCAAATA------------------------------TTTCTCCTAGCCTTTTTGCTCATGGGCAA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=27222.000000 s hg38.chr17_GL383564v2_alt 103255 5 + 133151 CTTCA s panTro5.chr17 16292409 5 + 83181570 CTTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16197265 5 + 83442489 CTTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4032305 5 + 4267968 CTTGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014968 5 - 2193130 CTTGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085581 5 - 77216781 Cttga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997843 5 - 80997621 Cttga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055546 5 + 10377808 Cttga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940509 5 - 8458610 CTTGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64896095 5 + 75148670 Cttga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125542 5 + 4244037 CTTGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147895 5 + 4569836 Cttga i colAng1.NW_012122154v1 C 0 C 0 s dasNov3.JH570468 413477 5 - 852752 TTTCA i dasNov3.JH570468 C 0 I 9355 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=20630717.000000 s hg38.chr17_GL383564v2_alt 103260 3596 + 133151 GAgtttcccatgagaatctaatgccttatgatctgtcactgtctcccatcacccccagatgggatcatgtagttgcaggaaaacaaactcaaggctcccactgatcctacattatggttagttgtgtaattttttcattgtatattacaatatattaatagtagaaataaagtgcacaataaatgtaatgggcttgaatcagccccaaatcataactttccctctcctcggcccatgggaaagttgttttccatgaaactggtctctggtaccaaaaaggctggggaccactgGTGTAAATGCTTCTAAGAATAGATAAGCAACTTAAGGTTTACAGGGTACTAAAAATATGGGTTTAAATGCTAATAAAACTGGATGCACATGAAAACACTCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGCCCCCTGGACCTCCTGTCcacagcacacccctgca--acacacacacacat--------------gcacatacatacat--------gtgcacatacctgcacacatacacacacaTGCTGTGCTTCATGCCCTCACTAAGGTGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTGCCTTCTCTGCAGACCATGCTTCAATCTCTTTCTTGGCTTTCCCTGTTAGTGAAAGAGACAAGCAGAGCCCCAGCATGTATCTGACTGCTTAGGGTCCAACCCAAGCTCACAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCAAAAAGAGGCATCAGCTTTTGGTGGAGACTTGAGCCCGGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGCCATCAAAAGTTTTATTCTTCAAGAGAAGGAGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTTAGTGCATGTGTGGGCAGGTGATGGTGACCTACAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTCATGCGCAtctctccctgtctctctctctaccttttatgtctctctccttatctctctccccacactccctctcagcctcctctgtctctgtctctctccccatctctctttctctctctcactcctttcttcccatgtctctttctctctccttct---ccacttctctctccctcctcctctccctctctGCCACTGTTCAGGCTCCTGCCCACCCCTCCCTGCTGTGCAGAGAGGCACACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAAGGCTGCCGGGACTTGGTCCCAGTACAGTGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGGGTGTGCTTGTGCTCTCTTGGGTGGGCACCCCACTCTCCAGGAAGCAGAAGCTGCAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCCGAGGCCAAAACAGAGGACACCTGCCAAGGCCCCACCCTGCTCCAgggttggggtagaggtaggggtagtggtggggATGAGAGCAGCCACTGCAATCTGGTccctgcccagcatcctgccctgcaccctgccatgcaaggcctcctctgccaccctttccctgcccCTCACCATCTTCACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCCTGGATCCAGGAACTAAGAGCAACCACTGGGCTCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGACAAATCTTGGCTCTCACTTATGCCCCCCC--GCAAGCCAGCCACACTCTGCCCCCACTCCCCCCA------------CTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCCCCCTCCCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCCACCCTTCCTGGGTGCCCCTCTATTGTCTGCTTGCCTAGATGTCTTAACCTCATTTTACCAAGCTAGAACAAATAACAGGGATGAGCCCCCAGCCTCTCCCAGGAAGATTTGGCAAAATGCTCTCCTTTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAACAAGAAGGGCAAGGAGCCCAGTTTTATGACCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACTCTCCTTTTGAGGAAGCAGGCCCCAACCCTAGGAAGCAGCAGATGGGGGCACACAGGCAGAGCTTCCGCAAGCTGTAGATCAGGGTCAGCAGATCTGCATTCAGCTTTAGCCCCAGGGGAGCTGCAAGAC---GTGAGACACtgataggtttggctctgtgtccccacccaaatctcattttgagctgtaatccccatgtgtcaagggaggaacctcatgggaggtgattgtattatagggggctgggttcccccatgctgttcccctgatagtgagtgagttctcaggagagcagatggttttaaagcatggcacttcctcgtttt----ctcactccctcctgctgccttgtgaagaagatgcccgcttccccttcgccttccaccatgattgcaagctttctgaactgtgagtcaattcaacctctttccttgataaattacccagtctcaggtatttcttcatagcagtgtgaaaacaaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTTCTGAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCCTGGTCTTTCTTTTCCCCTCATGAGGCCCAAGTGATCTGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCGACCTCCTTTCCTGACCCTCAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTGTCTCTCCTCATACTGGTAGCAACTTCTTCCAAGACCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCGCTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGGTGGGCCAATGGATGAATGGATGGATGAGTGGGACAGTAGTCCAGGGAGGATGTCCCTGTCTGTCCAGTTTGCATCGGCTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtctggcttcTATATGGCTCATGGGGCCTGTGGActggtctctccttttccctccagaccccatccccattaagtccatgagcaaatcatgtaggtgacatcctcacaatgatcctgaggtgactctactcaccatctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccctctcctccctgctggtgtggtgtggcctgttaacacctgagccgcagctgaacccacttctggctaggaccctctgctggctccctggctgctctgagtgacagctagagccttgcaacagcctcagccattgaacctgggacttctgtccctgagctctctgctgcttgcctctgctcacaccaggacaga s panTro5.chr17 16292414 3593 + 83181570 GAgtttcccatgagaatctaatgccttatgatctgtcactgtctcccatcacccccagatgggatcatgtagttgcaggaaaacaaactcaaggctcccactgatcctacattatggttagttgtataattttttcattgtatattacaatatattaatagtagaaataaagtgcacaataaatgtaatgggcttgaatcagccccaaatcatccctttccctctcctcaacccatgggaaagttgttttccatgaaactggtctctggtaccaaaaaggttggggaccactgGTGTAAATGCTTCTAAGAATAGATAAGCAACTTAAGGTTTACAGGGTACTAAAAATATGGGTTTAAATGCTAATAAAACTGGATGCACATGAAAACACTCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGACCCCTGGACCTCCTGTCcacagcacacccctgca--acacacacacacat--------------gcacatacatacat----acatgtgcacatacctgcacacacacacacacaTGCTGTGCTTCATGCCCTCACTAAGGTGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTCCTTGTTCTCCTGGTGTTTGCACAAGTGCCTTCTCTGCAGACCATGCTTCAATCTCTTTCTTGGTTTTCCCTGTTAGTGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCACAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCAAAAAGAGGCATCAGCTTTTGGTGGAGACTTGAGCCTGGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGCCATCAAAAGTTTTATTCTTCAAGAGAAGGAGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTTAGTGCATGTGTGGGCAGGTGATGGTGACCTACAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTCATGTGCAtctctccctgtctctct----accttttatatctctctccttatctctctccccacactccctctcagcctcctctgtctct------ctccccatctctctttctctctctcactcctttcttcccatgtctctttctctctccttcttctccacttctctctccctccttctctccctctctGCCACTGTTCAGGCTCCTGCCCACCCCTCCCTGGCGTGCAGAGAGGCACACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCCGGGCCTTGGTCCCAGTACAGTGCCCCCACCTCCCAGTGCCCTCAAGGTCAAGGGTGTGGGGTGTGCTTGTGCTCTCCTGGGTGGGCACCCCACTCTCCAGGAAGCAGAAGCTGCAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCCGAGGCCAAAATAGAGGACACCTGCCAAGGCCCCACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGAGAGCAGCCACTGCAATCTGGTccctgcccagcatcctgccctgcaccctgccatgcaaggcctcctctgccaccctttccctgcccCTCACCATCTTCACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCCTGGATCCAGGAACTAAGAGCAACCACTGGGCTCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGACAAATCTTGGCTCTCACTTATGCTCCCCC--CAAAGCCAGCCACACTCTGCCCCCTCTCCCCCCA------------CTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCCCCCTCCCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCCACCCTTCCTGGGTGCCACTCTATTGTCTGCTTGCCTAGATGTCTTAATCTCATTTTACCAAGCTAGAACAAATAACAGGGATGAGCCCCCAGCCTCTCCCAGGAAGATTTGGCAAAATGCTCTCCTTTTAGAAGCAGGAGCAGTGACAGGACCTAGGGACGACCCGAGGCTTGTCACCCAAGCAACAAGAAGGGCAAGGAGCCCAGTTTTATGACCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCAACCCCAGGAAGCAGCAGATGGGGGCACACAGGCAGAGCTTCCGCAAGCTGTAGATCAGGGTCAGCAGATCTGCATTCAGCTTCAGCCCCGGGGGAGCCGCAAGAC---GTGAGACACtgataggtttggctctgtgtccccacccaaatctcattttgagctgtaatccccatgtgtcaagggaggaacctcatgggaggtgattgtattatagggggctgggttcccccatgctgttcccctgatagtgagtgagttctcaggagagcagatggttttaaagcatggcacttcctcgtttt----ctcactcactcctgctgccttgtgaagaagatgcccgcttccccttcgccttccaccatgattgcaagttttctgaactgtgagtcaattcaacctctttccttgataaattacccagtctcaggtatttcttcatagcagtgtgaaaacaaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTTCTGAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCCTGGTCTTTCTTTTCCCCTCATGAGGCCCAAGTGATCTGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCTGAGCTCCTTTCCTGACCCTCAGGCTGGCTGATATGCTCTCTGGTTCCTGGAGGAAACTGATTGTCTCTCCTCATACTGGTAGCAACTTCTTCCAAGACCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCGCTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGGTGGGCCAATGGATGAATGGATGGATGAGTGGGACAGTAGTCCAGGGAGGATGTCCCTGTCTGTCCAGTTTGCATCGGCTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtctggttccTATATGGCTCATGGGGCCTGTGGACtggtctctccttttccctccagaccccatccccattaagtccatgagcaaatcatgtaggtgacatcctcacaatgatcctgaggtgactctactcaccacctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccctctcctccctgctggtgtggtgtggcctgttaacacctgagccacagctgaacccacttctggctaggaccctctgctggctccctggctgctctgagtgacagctagagccttgcaacagcctcagccattgaacctgggacttctgtccctgagctctctgctgcttgcctctgctcacaccaggacaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16197270 3601 + 83442489 GAgtttcccatgagaatctaatgccttatgatctgtcactgtctcccatcacccccagatgggatcatgtagttgcaggaaaacaaactcaaggctcccactgatcctacattatggttagttgtataattttttcattgtatattacaatatattaatagtagaaataaagtgcacaataaatgtaatgggcttgaatcagccccaaatcatccctttccctctccttggcccatgggaaagttgttttccatgaaactggtctctggtaccaaaaaggttggggaccactgGTGTAAATGCTTCTAAGAATAGATAAGCAACTTAAGGTTTACAGGGTACTAAAAATATGGGCTTAAATGCTAATAAAACTGGATGCACATGAGAACACTCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGACCCCTGGACCTCCTGTCcacagcacacccctgca--acacacacacacat--------------gcacatacatacatacatacatgtgcacatacctgcacacacacacacacaTGCTGTGCTTCATGCCCTCACTAAGGTGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTGCCTTCTCTGCAGACCATGCTTCAATCTCTTTCTTGGTTTTCCCTGTTAGTGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCACAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCAAAAAGAGGCATCAGCTTTTGGTGGAGACTTGAGCCCGGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGCCATCAAAAGTTTTATTCTTCAAGAGAAGGAGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTTAGTGCATATGTGGGCAGGTGATGGTGACCTACAGTTTGCACTGGGAACTACGATCAAGAGTGACCTGACCTCTGCTCATGCGCAtctctccctgtctctctctctaccttttatgtctctctccttatctctctccccacactccctctcagcctcctctgtctct------ctccccatctctctttctctctctcactcctttcttcccatgtctctttctctctccttcttctccacttctctctccctcctcctctccctctctGCCACTGTTCAGGCTCCTGCCCACCCCTCCCTGCCGTGCAGAGAGGCACACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCCGGGCCTTGGTCCCAGTACAGTGCCCCCATCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGGGTGTGCTTGTGCTCTCCTGGGTGGGCACCCCACTCTCCAGGAAGCAGAAGCTGCAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCCAAGGCCAAAACAGAGGACACCTGCCAAGGCCCCACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGAGAGCAGCCACTGCAATCTGGTccctgcccagcatcctgccctgcaccctgccatgcaaggcctcctctgccaccctttccctgcccCTCACCATCTTCACCCCTAGAAAGCCCCGGGCACAGGCTCCAGAAATCTCCCTGGATCCAGGAACTAAGAGCAACCACTGGGCTCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGACAAATCTTGGCTCTCACTTATGCTCCCCC--CAAAGCCAGCCACACTCTGCCCCCTCTCCCCCCA------------CTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCCCCCTCCCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCCATCCTTCCTGGGTGCCACTCTATTGTCTGCTTGCCTAGATGTCTTAACCTCATTTTACCAAGCTAGAACAAATAACAGGGATGAGCCCCCAGCCTCTCCCAGGAAGATTTGGCAAAATGCTCTCCTTTTAGAAGCAGGAGCAGTGACAGGACCTAGGGACGACCCGAGGCTTGTCACCCAAGCAACAAGAAGGGCAAGGAGCCCAGTTTTATGACCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCAACCCCAGGAAGCAGCAGATGGGGGCACATAGGCAGAGCTTCCGCAAGCTGTAGATCAGGGTCAGCAGATCTGCATTCAGCTTCAGCCCCGGGGGAGCTGCAAGAC---GTGAGACACtgataggtttggctctgtgtccccacccaaatctcattttgagctgtaatccccatgtgtcaagggaggaacctcatgggaggtgattgtattatagggggctgggttcccccatgctgttcccctgatagtgagcgagttctcagaagagcagatggttttaaagcatggcacttcctcgtttt----ctcactcactcctgctgccttgtgaagaagatgcccgcttccccttcgccttccaccatgattgcaagttttctgaactgtgagtcaattcaacctctttccttgatgaattacccagtctcaggtatttcttcatagcagtgtgaaaacaaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTTCTGAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCCTGGTCTTTCTTTTCCCCTCATGAGGCCCAAGTGATCTGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGTCTGTCTAGCTGGTGGAGAGGCTGAGCTCCTTTCCTGACCCTCAGGCTGGCTGATATGTTCTCTGGTTCCTGGAGGAAACTGATTGTCTCTCCTCATACTGGTAGCAACTTCTTCCAAGACCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGGTGGGCCAATGGATGAATGGATGGATGAGTGGGACAGTAGTCCAGGGAGGATGTCCCTGTCTGTCCAGTTTGCATCGGCTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtctggttccTATATGGCTCATGGGGCCTGTGGACtggtctctccttttccctccagaccccatccccattaagtccatgagcaaatcatgtaggtgacatcctcacaatgatcctgaggtgactctactcgccacctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccctctcctccctgctggtgtggtgtggcctgttaacacctgagccacagctgaacccacttctggctaggaccctctgctggctccctggctgctctgagtgacagctagagccttgcaacagcctcagccattgaacctgggacttctgtccctgagctctctgctgcttgcctctgctcacaccaggacaga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4032310 3595 + 4267968 GAGTTTTCCatgagaatctaatgccttatgatctgtcactgtctcccatcacccccagatgggatcatgtagttgcaggaaaacaaactcaaggctcccactgatcctacattatggttagttgtataattttttcattgtatattacaatgtattaatagtagaaataaagtgcacaataaatgtaatgggcttgaatcagccccaaatcatccctttccctctccttggcccatgggaaagttgttttccatgaaactggtctctggtaccaaaaaggttggggaccactgGTGTAAATGCTTCTAAGAATAGATAAGCAACTTAAGGTTTACAGGGTACTAAAAATATGGGTTTAAATGCTAATAAAACTGGGTGCACATGAAAACACTCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGGGCTGCCCCCTGGACCTCCTGTCcacagcacacccctgca--acacacacgcacat--------------gcacatacatacat----acatgtgcacatacctgcacacatacacacacaTGCTGTGCTTCATGCCCTCACTAAGGTGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTGCCTTCTCTGCAGACCATGCTTCAATCTCTTTCTTGGCTTTCCCTGTTAGTGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCAAAAAGAGGCATCAGCTTTTGGTGGAGACTTGAGCCCGGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGCCATCAAAAGTTTTATTCTTCAAGAGAAGGAGTTCTCAGGGGCTGTGGGAAGCAGGCACAGAGCTCTTTAGTGCATGTGTGGGCAGGTGATGGTGACCTACAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACctctgctcatgctcatctctccctgtctctctctctaccttttatgtctctctccttatctctctccccacactccctctcagcctcctctgtctct------ctccccatctctctttctctctcttactcctttcttcccatgtctctttctctctccttct---ccacttctctctccctcttcttctccctctctGCCACTGTTCAGGCTCCTGCCCACCCCTCCCTGCCGTGCAGAGAGGCGCATGCAGGACTCCTAGTCTACCTTCCAGGGCACACGCACAGGGCTGCTGGGCCTTGGTCCCAGTACAGTGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGGGTGTGCTTGTGCTCTCCTGGGTGGGCACCCCACTCTCCAGGAAGCAGAAGCTTCAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAACAGAGGACTCCTGCCAAGGCCCCACCCTGCACCAgggttggggtagaggtaggggtagtggtgggggtGAGAGCAGCCACTGCAATCTGGTccctgcccagcatcctgccctgcaccctgccatgcaaggcctcctctgccaccctttccctgcccCTCACCATCTTCACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCCTGGATCCAGGAAGTAAGAGCAACCACTGGGCTCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGACAAATCTTGGCTCTCACTTATGCCCCCCCCTCCAAGCCAGCCACACTCTGCCCCCACTCCCCCCA------------CTTCCTGACTTTAGCTCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCCCCCTCCCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCTGCCACCCACCCTTCCTGGGTGCCACTCTATTGTCTGCTTGCCTAGATGTCTTAACCTCATTTTACCAAGATAGAACAAATAACAGGGATGAGCCCCCAGCCTCTCCCAGGAAGATTTGGCAAAATGCTCTCCTTTTAGAAGCAGGAGCAGTGACAGGACCTAGGGACGACCCGAGGCTTGTCACCCAAGCAACAAGAAGGGCAAGGAGCCCAGTTTTATGACCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCAACCCCAGGAAGCAGCAGACAGGGGCACACAGGCAAAGCTTCCACAAGCTGTAGATCAGGGTCAGCAGATCTGCATTCAGCTTCAGCCCCGGGGGAGCTGCAAGAC---GTGAGACGCtgataggtttggctctgtgtccccacccaaatctcattttgagctgtaatccccatgtgtcaagggaggaacctcatgggaggtgattgtattatagggggctgggttcccccatgctgttcccctgatagtgagtgagttctcaggagagcagatggttttaaagcatggcacttcctcgtttt----ctcactccctcctgctgccttgtgaagaagatgcccgcttccccttcgccttccaccatgattgcaagttttctgaactgtgagtcaattcaacctctttccttgataaattacccagtctcaggtatttctttatagcagtgtgaaaacaaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTTCTGAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCCTGGTCTTTCTTTTCCCCTCATGAGGCCCAAGTGACCTGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCGAGCTCCTTTCCTGACCCTCAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTATCTCTCCTCATACTGGTAGCAACTTCTTCCAAGACCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCGCTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGGTGGGCCAatggatgaatggatggatgaatggGACAGTAGTCCAGGGAGGATGTCCCTGTCTGTCCAGTTTGCATCGGTTCCTGTGCAgtcacatagctccctgctagctgagttgaaatt-aaacccattcagtctggctccTATATGGCTCATGGGGCCTGTGGACtggtctctccttttccctccagaccccatccccattaagtccatgagcaaatcatgtaggtgacatccttacaatgatcctgaggtgactctactcaccacctgccttctcccacctagtctgagcacccttcattacttacctggaccagccagctggcccccctctcctccctgctggtgtggtgtggcctgttaacacctgagccacagctgaacccacttctggctaggaccctctgctggctccctggctgctctgagtgacagctagagccttgcaacagcctcagccattgaacctgggacttctgtccctgagctctctgctgcttgcctctgttcacaccaggacaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2014973 3588 - 2193130 GAGTCTCCC--gagaatctaatgccttatgatctgtcactgtctcccatcatccccagatgggatcatgtagttgcaggaaaacaagctcaaggctcccactgatcctacattatggctagttgtataattttttcattgtatattacaatgtattaatagtagaaataaagtgcacaataaatgtaatgggcttgaatcagcctcaattcatccctttccctctcctcagcccatgggaaagttgttttccattaaactggtctctggtaccaaaaaggttggggaccactgGTGTAAATGCTTCTAAGAATAGATAAGCAACTCAAGGTTTACATGGTACTAAAAATATGGGTTTAAATGCTAATAAGACTGGATGCACATGAAAACACTCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGCCCCCTGGACCTCCTGTCCACAGCTCACCCCTGCA--acacacacacacat--------------gcacatacatacat----acatgtgcacatacctgcacacatacacacacaTGCTGTGCTTCATGCCTTCACTAATGTGGCATGGGAAGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGCCTTCTTGTTCTCCTGGTGTTTGCACAAGTGCCTTCTCTGTAAACTATGCTTCAATCTCTTTCTTGGCTTTCCCTCTTAGTGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGTTTAGGGTCCAACCCAAGTTCATAAGCTTCTTGGGGAGCCTAGTGAGATGAAGGCACCGCAGAGCCTCCCAAAAAGAGGCATCAGCTTTTGGTGGAGCCTTGAGCCCAGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAATCCAATGAGGAATGGCAGCCATCAAAAGCTTTATTCTTGAAGAGAAAGGGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTTAGTGCATGTGTGGGCAGGTGATGGCGACCTACAGTTTGCACTGGAAACTAAGATCAAGAGTGACCTGACCTCTGCTCATGCCCGtccctccctgtctctctctctaccttttatgtctctctccttatctctctccccacactccctctcagcctcctctgtctct------ctccccgtctctctttctctctctcactcctttcttcccatgtctctttctctctccttcttctccacttctctctccctccttctctcgctctctGCCACTGTTCAGGCTCCTGCCCCACCCCCCC----GTGCAGAGAGGTACACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCAGGGCCTTGGTCCCAACACAGTGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGGGTGTGCTTGTGCTCTCCTGGGTGGGCACCCCACTCTCCAGGAAGCAGAAGCTGCAGGTCACTACTAGCTTGAGTGGCACGCCTATTGGACTACTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAACAGAGGACAGCTGCCAAGGCCCCACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGAGAGCAGCCACTGCAATCTGGTccctgcctggcatcctgccctgcaccctgccatgcaatgcctcctctgccaccctttccctgcccCTCACCATCTCCACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCCTGGATCCAGGAACTAAGAGCAACCACTGGGCTCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGACAAATCTTGGCTCTCACTTATGCCTCCCC--CCAAGCCAGCCACACTCTGTCCCCACACCCCCCA------------CTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCCCCCTCCCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCGGCCACCCACCCTTCCTGGGTGCCACTCTATTGTCTGCTTTCCTAGATGTCTTAACCTCATTTTACCAAGATAGAACAAATAACAGGGATGAGCCCCCAGCCTCTCCCAGGAAGATTTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGA-CCGAGGCTTGTCACCCAAGCAGCAAGAAGGGCAAGGAGCCCAGTTTTATGACCTCATCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGATGGGGGCTCACAGGCAGAGCTTCCGCAAGCTGTAGAGCAGGGCCAGCAGATCTGCACTCAGCTTCAGCCCCGTGGGAGCTGCAAGACAGAGTGAGACCCtgataggtttggctctgtgtccccacccaaatctcattttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattgtattataggtggctgggttcccccatgctgttcccctgatagtgagtgagttctcaggagagcagatggttttaaagcatggcacttcctcattttctcactcactccctcctgctgccttgtgaagatggtgcctgtttcccctttgccttccaccatgattgtaagttttctgaactgtgagtcaatttaacctctttccttgataaattacccaatctcaggtatttcttcatagcagtgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTGAGGCCACCAGCTGCCCCCATGTTCTTCCTCTGCCCACTGGTCTTTC-TTTCCCCTCATGAGGCCCAAATGATCTGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGACGCCGAGCTCCTTTCCTGACCCTGAGCCTGGCTGATATGCTCTCTGGATCCTGGAAGAAACTGATTGTTTCTCCTCATACTGGTAGCAACTTCTTCCAAGACCACAAAGCTGGAAAACTGGTCTTTTTGCTGTCTCCGCTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGGTGGGCCAatggatgaatggatggatgaatggGACAGTAGTCCAGGGAGGATGTCCCTGTCTGTCCAGTTTGCATCGGCTCCTGTGCAGTCAC--AGCTCACTGCTAGCTGAGTTGAAATTAAAACCCATTCATTCTGGCTCCTATGTGGCTCATGGGGCCTGTGGActggactgtccttttccctccagaccccatccccattaaatccatgagcaaatcatgcaggtgacatcttcacaatgatcctgaggtgacactactcaccacctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccctctcctccccgctggtgtggtgtggcctgttaacacctgagccacagctgagcccacttctggctaggaccctctgctggctccctggctgctctgagtga-agctagagccttgcaacagcctcagccattgaacctgggacttctgtccctgagctgtcggctgctcgcctctgctcacaccaggccaga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30085586 3607 - 77216781 gagtttcccatgagaatctcatacctgatgatctgtcactgtctcccatcacccccagatgggatcatgtagatgcaggaaaacaagctcaaggctcccaccgatcctacattatggtgagttgtataattttttcattgtatattacaatgtattaatagtagaaatgaagtgcacaataaatgtaatgggcttgaatcagccccaaatcatcccctcccctctccttggcccgtgggaaagttgttttccacaaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATAGATAAGTAACTTAAGGTTTACATGGTACCAAAAATATGGGTTTAAATGCTAATAAATCTGGATGCACATGAAAACA-TCTCTTGCTGTGGTCCAGGGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCTGGACCTGCTGTCcacagcacacccctgca--acacacacacacacacgtgaacacacacacatgcacatacat----acctgttcagatacctgcacacatatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTACACAAGTACCTTCTCTGCAGACCATGCTTCAATCTCTTTTTTAACTTTCCCTCTTAATGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGACCCTCCCGAAAAGAGGCATCAGCTTTTGGTGGAACCTTGAGCCCAGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAACCGAGTGAGGAATGGCAGTCATCAAAAGTTTTACTCTTCAAGAGAAGGGGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTCAGTGCACGTGTGGGCAGGTGACGGTGACCTGCAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTTATGCCCAtctctccctgtctctgt----accttttatgtctctctccttatctctctccccatgctacctctcagcctcctctgtctct------ctccccatctctcttcctttctctaactcctttctccccatgtctctttctgtctccttcttttgcacgtctctctcccttctcctctccctcgctGCCACTGTTCAGGCTCCTGTCCCACCTCCCG----GCGCAGAGAGGTGCACGCAGGACTCCTAGGCTACTTTCCAGGGCACACGCACAGGGCTGCAAGGCATTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGAGTGTGCTTGTGCTCTCCTGGTTGGGCACCGCACGCTCCAGGAAGCAGAAGCTGTAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAGCAGAGGGCACCTGCCAAGGCCCTACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGGGAGCAGTCACTGCAATCTGGTCCTTGCCCGGCATCCTGCCGTGAACTCTGCCATGCAAGGCCTTCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCTACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCTTGGATCCAGGAACTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGTTTCAGCCACACCCACTGCATGCTGACAGATCTTGGCTCTCACTTATGCCCCACC--CCAAGCCAGCCACACTCTGCCCCCACACCCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGCGCTGCCTCCTGGTAACCTTTCTCCCTCGCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CCCTTCCCAGGAGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCATTTTACCAAGATAGAACAAACAACA-GGACGAGCCCCCGGCCTCTCCCAGGAAGATCTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCCAGAAGGGCAGGGAGCCCAGTTTTATGCCCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGAGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGAAGGGGGTGCACAGGCAGAGCCCCCGCAAGCTGTAGAGCAGGGTCAGCAGTTCTGCACTCAGCTTCAGCCCCTGGGGAGCTGCAAGACAGAGTGAGACCCtgataggtttggctctgtgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattggattatagggggccgggttcccccatgttgttcccctgatagtgagtcagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactcactccctcctgctgccttgtgaagaaggtgcctgcttcccctttgccttccatcatgattgtaagtttcctgaactgtgagtcaattcaacctctttctttgataaattacccagtctccggtatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTTAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCGTGGTCTTTCCTTTCCCCTCATGAGGCCCAAGTGATCCGCATGGCCAGCCCCAGCCCAAGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCGAGCTCCTTTCCTGACTCCGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTCTCTCTCCTCATACTGGTAGCAACTGCTTCCAAGATCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGACGGGCCAatggatgaatggatggatgaat-ggaCAGTAATCCAGGGAGGATGTCCCCGTCTGTTCAGTTTGCACTGGTTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtc-----------tggctcatggggcctgtgGActggactctccttttccctccaca-cccatccccattcagtccatgagtaaatcatacaggtgacaccttcacaatgatcctgaggtgacactactcatcgcctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccatctcctccccgctggtgtggtgtggcctgttaacaccagagccacagctgagcctgcttctggccaggatcctctgctggctccccagctgctctgagtaacagctagagccttgcaacagcctcagccattgaacctgggacttctctccctgagctgtctgctgctcgcctctgctcacaccaggtcaga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 27997848 3605 - 80997621 gagtttcccatgagaatctcatacctgatgatctgtcactgtctcccatcacccccagatgggatcatgtagatgcaggaaaacaagctcaaggctcccaccgatcctacattatggtgagttgtataattttttcattgtatattacaatgtattaatagtagaaatgaagtgcacaataaatgtaatgggcttgaatcagccccaaatcatcccctcccctctccttggcccgtgggaaagttgttttccacgaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATAGATAAGTAACTTAAGGTTTACATGGTACTAAAAATATGGGTTTAAATGCTAATAAATCTGGATGCACATGAAAACA-TCTCTTGCTGTGGTCCAGGGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCTGGACCTGCTGTCcacagcacacccctgca--acacacacacacac--gtgaacacacacacatgcacatacat----acctgttcagatacctgcacacatatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTACACAAGTACCTTCTCTGCAGACCATGCTTCAATCTCTTTTTTAACTTTCCCTCTTAATGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCGAAAAGAGGCATCAGCTTTTGGTGGAACCTTGAGCCCAGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAACCGAGTGAGGAATGGCAGTCATCAAAAGTTTTACTCTTCAAGAGAAGGGGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTCAGTGCACGTGTGGGCAGGTGACGGTGACCTGCAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTTATGCCCAtctctccctgtctctgt----accttttatgtctctctccttatctctctccccatgctacctctcagcctcctctgtctct------ctccccatctctcttcctttctctaactcctttctccccatgtctctttctgtctccttcttttgcacgtctctctcccttctcctctccctcgctGCCACTGTTCAGGCTCCTGTCCCACCTCCCG----GCGCAGAGAGGTGCACGCAGGACTCCTAGGCTACTTTCCAGGGCACACGCACAGGGCTGCAAGGCATTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGAGTGTGCTTGTGCTCTCCTGGGTGGGCACCGCACGCTCCAGGAAGCAGAAGCTGTAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAGCAGAGGGCACCTGCCAAGGCCCTACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGGGAGCAGTCACTGCAATCTGGTCCTTACCCGGCATCCTGCCGTGAACTCTGCCATGCAAGGCCTCCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCTACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCTTGGATCCAGGAACTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGTTTCAGCCACACCCACTGCATGCTGACAGATCTTGGCTCTCACTTATGCCCCACC--CCAAGCCAGCCACACTCTGCCCCCACACCCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGCGCTGCCTCCTGGTAACCTTTCTCCCTCGCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CCCTTCCCAGGAGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCATTTTACCAAGATAGAACAAACAACA-GGACGAGCCCCCGGCCTCTCCCAGGAAGATCTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCCAGAAGGGCAGGGAGCCCAGTTTTATGCCCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGAGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGAAGGGGGTGCACAGGCAGAGCCCCCGCAAGCTGTAGAGCAGGGTCAGCAGTTCTGCACTCAGCTTCAGCCCCTGGGGAGCTGCAAGACAGAGTGAGACCCtgataggtttggctctgtgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattggattatagggggccgggttcccccatgttgttcccctgatagtgagtcagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactcactccctcctgctgccttgtgaagaaggtgcctgcttcccctttgccttccatcatgattgtaagtttcctgaactgtgagtcaattcaacctctttctttgataaattacccagtctccggtatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTTAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCGTGGTCTTTCCTTTCCCCTCATGAGGCCCAAGTGATCCGCATGGCCAGCCCCAGCCCAAGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCGAGCTCCTTTCCTGACTCCGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTCTCTCTCCTCATACTGGTAGCAACTGCTTCCAAGATCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGACGGGCCAatggatgaatggatggatgaat-ggaCAGTAATCCAGGGAGGATGTCCCCGTCTGTTCAGTTTGCACTGGTTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtc-----------tggctcatggggcctgtgGActggactctccttttccctccaca-cccatccccattcagtccatgagtaaatcatacaggtgacaccttcacaatgatcctgaggtgacactactcatcgcctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccatctcctccccgctggtgtggtgtggcctgttaacaccagagccacagctgagcctgcttctggccaggatcctctgctggctccccagctgctctgagtaacagctagagccttgcaacagcctcagccattgaacctgggacttctctccctgagctgtctgctgctcgcctctgctcacaccaggtcaga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2055551 3603 + 10377808 gagtttcccatgagaatctcatacctgatgatctgtcactgtctcccatcacccccagatgggatcatgtagatgcaggaaaacaagctcaaggctcccaccgatcctacattatggtgagttgtataattttttcattgtatattacaatgtattaatagtagaaatgaagtgcacaataaatgtaatgggcttgaatcagccccaaatcgtcccctcccctctccttggcccgtgggaaagttgttttccacgaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATGGATAAGTAACTTAAGGTTTACATGGTACTAAAAATATGGGTTTAAATGCTAATAAATCTGGATGCACATGAAAACA-TCTCTTGCTGTGGCCCAGGGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCTGGACCTGCTGTCcacagcacacccctgca--acacacacacacac----gaacacacacacatgcacatacat----acatgttcagatacctgcacacatatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTACACAAGTACCTTCTCTGCAGACCATGCTTCAATCTCTTTTTTAACTTTCCCTCTTAATGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCGAAAAGAGGCATCAGCTTTTGGTGGAACCTTGAGCCCAGGAAGGTGGGACATCATGGTTCATCAAAGACACAACCAAAACCGAGTGAGGAATGGCAGTCATCAAAAGTTTTACTCTTCAAGAGAAGGGGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTCAGTGCACGTGTGGGCAGGTGACGGTGACCTGCAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTTATGCCCAtctctccctgtctctgt----accttttatgtctctctccttatctctctccccatgctacctctcagcctcctctgtctct------ctccccatctctcttcctttctctaactcctttctccccatgtctctttctgtctccttcttttgcacgtctctctcccttctcctctccctcgctGCCACTGTTCAGGCTCCTGTCCCACCCCCCG----GCCCAGAGAGGTGCACGCAGGACTCCTAGGCTACTTTCCAGGGCACACGCACAGGGCTGCAAGGCATTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGAGTGTGCTTGTGCTCTCCTGGGTGGGCACCGCACGCTCCAGGAAGCAGAAGCTGTAGGTCACTGCTGTCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAGCAGAGGGCACCTGCCAAGGCCCTACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGGGAGCAGTCACTGCAATCTGGTCCTTGCCCGGCATCCTGCCGTGAACTCTGCCATGCAAGGCCTCCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCTACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCTTGGATCCAGGAACTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGTTTCAGCCACACCCACTGCATGCTGACAGATCTTGGCTCTCACTTATGCCCCACC--CCAAGCCAGCCACACTCTGCCCCCACACCCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGCGCTGCCTCCTGGTAACCTTTCTCCCTCGCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CCCTTCCCGGGAGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCATTTTACCAAGATAGAACAAACAACA-GGACGAGCCCCCGGCCTCTCCCAGGAAGATCTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCCAGAAGGGCAGGGAGCCCAGTTTTCTGCCCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGAGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGAAGGGGGTGCACAGGCAGAGCCCCCGCAAGCTGTAGAGCAGGGTCAGCAGTTCTGCACTCAGCTTCAGCCCCTGGGGAGCTGCAAGACAGAGTGAGACCCtgataggtttggctctgtgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattggattatagggggccgggttcccccatgttgttcccctgatagtgagtcagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactcactccctcctgctgccttgtgaagaaggtgcctgcttcccctttgccttccaccatgattgtaagtttcctgaactgtgagtcaattcaacctctttctttgataaattacccagtctccggtatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTTAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCGTGGTCTTTCCTTTCCCCTCATGAGGCCCAAGTGATCCGCATGGCCAGCCCCAGCCCAAGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCGAGCTCCTTTCCTGACTCCGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTCTCTCTCCTCATACTGGTAGCAACTGCTTCCAAGATCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGACGGGCCAatggatgaatggatggatgaat-ggaCAGTAGTCCAGGGAGGATGTCCCCGTCTGTTCAGTTTGCACTGGTTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtc-----------tggctcatggggcctgtgGActggactctccttttccctccaca-cccatccccattcagtccatgagtaaatcatacaggtgacaccttcacaatgatcctgaggtgacactactcatcgcctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccatctcctccccgctggtgtggtgtggcctgttaacaccagagccacagctgagcctgcttctggccaggatcctctgctggctccccagctgctctgagtaacagctagagccttgcaacagcctcagccattgaacctgggacttctctccctgagctgtctgctgctcgcctctgctcacaccaggtcaga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1940514 3574 - 8458610 gag------------------------------tgtcactgtctcccatcacccccagatgggatcatgtagatgcaggaaaacaagctcaaggctcccactgatcctacattatggtgagttgtataattttttcattgtatattacaatgtattaatagtagaaataaagtgcaccataaatgtaatgggcttgaatcagccccaaatcatcccttcccctctccttggcccatgggaaagttgttttccatgaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATAGATAAGTAACTTAAGGTTTACATGGTACTAAAAATATGGATTTAAATGCTAATAAATCTGGATACACATGAAAACA-TCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCTGGACCTGCTGTCCACAGCACGCCCCTGCA--acacacacacacac--atgaacacacacacatgcacatacat----acatgttcagacacctgcacacatatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTACCTTCTCTGCAGACCATGCTTCAATCTCTTTTTTGACTTTCCCTCTTAGTGAAAGAGAGAAGCAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCGAAAAGAGGCATCAGCTTTTGGTGGAACCTTGAGCCCAGGAAGGTGAGACATCACGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGTCATCAAAAGTTTTATTCTTCAAGAGAAGGGGTTCTCAGGGGCTGTGGGCAGCGGGCACAGAGCTCTTCAGTGCACGTGTGGGCAGGTGACGGTGACCTACAGTTTGCATTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTCATGCCCAtctctccctgtctctgt----accttttatgtctctcttcttatctctctccccatactacctctcagcctcctctgtctct------ctccccatctctcttcctctctctaactcctttctccccatgtctctttctgtctccttcttttgcacatctctctcccttctcctctccctctctGCCACTGTTCAGGCTCCTGTCCCACCCCCCG----GCGCAGAGAGGTGCACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCAAGGCCTTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGAGTGTGCTTGTGCTCTCCTGGGTGGGCACCGCACGCTCCAAGAAGCAGAAGCTGTAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAGCAGAGGGCACCTGCCAAGGCCCTACCCTGCACCAgggttggggtagaagtaggggtagtggtggggATGGGAGCAGTCACTGCAATCTGGTCCTTGCCCGGCATCCCGCCCTGAACTCTGCCATGCAAGGCCTCCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCTACCCCTAGAAAGCCCCAGGCACAAGCTCCAGAAATCTCCTTGGATCCAGGAACTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGGGTCAGCCACACCCACTGCATGCTGACAGGTCTTGGCTCTCACTTATGCCCCACC--CCAAGCCAGCCACACTCTGCCCCCACACCCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCTCCCTCGCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CCCTTCCCGGGAGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCCTTTTACCAAGATAGAACAAACAACA-GGATGAGCCCCCGGCCTCTCCCAGAAAGATCTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCAAGAAGGGCAGGGAGCCCAGTTTTATGCCCTCACCTTGGGAGGACGTGGCCAGGGCTCCACAAGGCCCTGTAGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGACCCCACCCCCAGGAAGCAGCAGAAGGGGGTGCACAGGCAGAGCTCCCGCAAGCTGTAGAGCAGGGTCAGCAGTTCTGCACTCAGCTTCAGCCCCTGGGGAGCTGCAAGACAGAGTGAGACCCtgatagggttggctctgtgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattggattatagggggccgggttcccccatgttgttcccctgatagtgagtgagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactcactccctcctgctgccttgtgaagaaggtgcctgcttcccctttgccttccaccatgattgtaagtttcctgaactgtgagtcaattcaacctctttctttgataaattacccagtctccggtatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTTAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCTGTGGTCTTTCCTTTCCCCTCATGAGGCCCAAGTGATCCGCATGGCCAGCCCCAGCCCAAGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCAAGCTCCTTTCCTGA-TCCGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTCTCTCTCCTCATACTGGTAGCAACTGCTTCCAAGATCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGATGGGCCAatggatgaatggatggatgaat-ggaCAGTAGTCCAGGGAGGATGTCCCCGTCTGTTCAGTTTGCACTGGTTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtc-----------tgactcatggggcctgtgGActggactctccttttccctccaca-cccatccccattcagtccgtgagtaaatcatacaggtgacaccttcacaatgatcctgaggtgacactactcatcgcctgccttctcccacctagtttgagcacccttcattacttacctggaccagccagctggcccccatctcctccccgctggtgtggtgtggcctgttaacaccagagccacagctgagcctgcttctggccaggatcctctgctggctccccagctggtctgagtaacagctagagccttgcaacagcctcagccattgaacccgggacttctctccctgagctgtctgctgctcgcctctgctcacaccaggtcaga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64896100 3597 + 75148670 gagtttcccatgagaatctaatgcctgatgatctgtcactgtctcccatcacccccagatgggatcatgtagatgcaggaaaacaagctcaaggctcccacggatcctacattgtggtgagttgtataattttttcattgtatgttacaatgtattaatagtagaaataaagtgcaccataaatgtaatgggcttgaatcagccccaaatcatcccttcccctctccttggcccatgggaaagttgttttccacgaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATAGATAAGTAACTTAAGGTTTACATGGTACTAAAAATATGGGTTTAAATGCTAATAAATCTGGATGCACATGAAAACA-TCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCTGGACCTGCTGTCcacagcacacccctgcaacacacacacacacac--atgaacacacacacatgcacatacat----acatgttcagacacctgcacacatatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCAT-GGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTACATTCTCTGCAGACCATGCTTCAATCTCTTTTTTAACTTTCCCTCTTAACGAAAGAGAGAAGCAGAGCCCCAGCACGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCAAAAAGAGGCATCAGCTTTTGGTGGAACCTTGAGCCCAGGAAGGTGGGACATCACGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGTCATCAAAAGTTTTATTCTTCAAGAGAAGGGGTTCTCAGGGGCTGTGGGCAGCACGCACAGAGCTCTTCAGTGCACGTGTGGGCAGGTGACGGTGACCTGCAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTCATGCCCATTtctccctgtctctgt----accttttatgtctctctccttatctctctccccatgctacctctcagcctcctctgtctct------ctccccatctctcttcctctctctaactcctttctccccatgtctctttctgtctccttcttttgcacgtccctctcccttctcctctccctctctGCCACTGTTCAGGCTCCTGTCCCACCCCCCG----GCGCAGAGAGGTGCACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCAAGGCCTTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGAGTGTGCTTGTGCTCTCCTGGGTGGGCACCGCACGCTCCAGGAAGCAGAAGCTGTAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAGCAGAGGGCACCTGCCAAGGCCCTACCCTGCACCAAggttggggtagaggtaggggtagtggtggggATGGGAGCAGCCACTGCAATCTGGTCCTTGCCCGGCATCCTGCCCTGAACTCTGCCATGCAAGGCCTCCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCTACCCCTAGAAAGCCCCAGGCACAAGCTCCAGAAATCTCCTTGGATCCAGGAACTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGTGTCAGTCACACCCACTGCATGCTGACAGATCTTGGCTCTCACTTATGCCCCACC--CCAAGCCAGCCACACTCTGCCCCCACAACCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCTCCCTCGCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CCCTTCCCGGGAGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCATTTTACCAAGATAGAACAAACAACA-GGATGAGCCCCCGGCCTCTCCCAGGAAGATCTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCAAGAAGGGCAGGGAGCCCAGTTTTATGCCCTCACCTTGGGAGGACGTGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTTCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGAAGGGGGTGCACAGGCAGAGCTCCCTCAAGCTGTAGAGCAGGGTCAGCAGTTCTGCACTCAGCTTCAGCCCCTGGGGAGCTGCAAGACAGAGTGAGACCCtgataggtttggctctttgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaagaacctcatgggaggtgattggattatagggggctgggttcccccatgttgttcccctgatagtgagtgagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactccctccctcctgctgccttgtgaagaaggtgcctgcttcccctttgccttccaccatgattgtaagtttcctgaactgtgagtcaattcaacctctttctttgataaattacccagtctccgatatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGATGCCTTCTCCTTAGGCCACCAGCTGCCCCCATG---CTCCTCTGCTCCCTGGTCTTTCTGGTCCCCTCATGAGGCCCAAGTGATCCGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCTGAGCTCCTTTCCTGACCCTGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTCTCTCTCCTCATACTGGTAGCAACTGCTTCCAAGACCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGATGGGCCAatggatgaatggatggatgaat-ggaCAGTAGTCCAGGGAGGATGTCCCCGTCTGTTCAGTTTGCACTGGCTCCTGTGCAGTCACATAGCTCCCTGCTAGCTGAGTTGAAATTAAAACCCATTCAGTC-----------TGGCTCATGGGGCCTGTGGActggactctccttttccctccgca-cccatccccattaagtccatgagtaaatcatacaggtgacaccttcacaatgatcctgaggtgacgctactcatcgcctgccttctcccacctagtttgagcacccttcattacttacctggaCCAGCCAGCTGGCCCCCATCTCCTCCCCACTGGTGTGGTGTGGCCTGTTAACACCAGAGCCACAGCTGAGCCCActtctggtcaggatcatctgctggctccccagctgctctgagtaacagctagagcgttgcaacagcctcagccattgaacctgggacttctctccctgagctgtctgccgctctccccggctcgcaccaggccaga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2125547 3575 + 4244037 gag------------------------------tgtcactgtctcccatcacccccagatgggatcatgtagatgcaggaaaacaagctcaaggctcccacggatcctacattatggtgagttgtataattttttcattgtatattacaatgtattaatagtagaaataaagtgcaccataaatgtaatgggcttgaatcagccccaaatcatcccttcccctctccttggcccatggaaaagttgttttccacgaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATAGATACGTAACTTAAGGTTTACATGGTACTAAAAATACGGGTTTAAATGCTAATAAATCTGGATGCACATGAAAACA-TCTCTTGCTGTGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCTGGACCTGCTGTCcacagcacacccctgca--acacacacacacac--atgaacacacacacatgcacatacat----acatgttcagacacctgcacacatatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTACCTTCTCTGCAGACCATGCTTCAATCTCTTTTTTGACTTTCCCTCTTAGTGAAAGAGAGAAGTAGAGCCCCAGCATGTATCCGACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCGAAAAGAGGCATCAGCTTTTGGTGGAACCTTGAGCCCAGGAAGGTGGGACATTACGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGTCATCAAAAGTTTTATTCTTCAAGAGAAGGAGTTCTCAGGGGCTGTGGGCAGCAGGCACAGAGCTCTTCAGTGCACGTGTGGGCAGGTGACGGCGACCTGCAGTTTGCACTGGGAACTAAGATCAAGAGTGACCTGACCTCTGCTCATGCCCAtctctccctgtctctgt----accttttatgtctctcttcttatctctctccccatgctacctctcagcctcctctgtctct------ctccccatctctcttcctctctctaactcctttctccccatgtctctttctgtctccttcttttgcacgtctctctcccttctcctctccctctctGCCACTGTTCAGGCTCCTGTCCCATCCCCCG----GCGCAGAGAGGTGCACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCAAGGCCTTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGCCCTCAAGGTCAGGGGTGTGGAGTGTGCTTGTGCTCTCCTGGGTGGGCACCGCACGCTCCAAGAAGCAGAAGCTGTAGGTCACTGCTGGCTTGAGTGGCACGCCTATTGGACTGCTGGCTTCCAACCTGTGATCTGCTGAGGCCAAAGCAGAGGGCACCTGCCAAGGCCCTACCCTGCACCAgggttggggtagaggtaggggtagtggtgggAATGGCAGCAGCCACTGCAATCCGGTCCTTGCCCGGCATCCCGCCCTGAACTCTGCCATGCAAGGCCTCCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCCACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCTTGGATCCAGGAACTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGATAGGTCTTGGCTCTCACTTATGCCCCACC--CCAAGCCAGCCACACTCTGCCCCCACACCCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGCGCTGCCTCCTGGTAACCTTTCTCCCTCGCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CTCTTCCCGGGAGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCATTTTACCAAGATAGAACAAACAACA-GGATGAGCCCCCGGCCTCTCCCAGGAAGATCTGGCAAAACGCTCTCCATTTAGAAGCAGGAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCAAGAAGGGCAGGGAGCCCAGTTTTATGCCCTCACCTTGGGAGGACATGGCCAGGGCTCCACAAGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGAAGGGGGTGCACAGGCAGAGCTCCCGCAAGCTGTAGAGCAGGGTCAGCAGTTCTGCACTCAGCTTCAGCCCCTGGGGAGCTGCAGGACAGAGTGAGACCCtgatagggttggctctgtgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattggattatagggggccgggttcccccatgttgttcccctgatagtgagtgagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactcactccctcctgctgccttgtgaagaaggtgcctgcttcccctttgccttccaccatgattgtaagtttcctgaactgtgagtcaattcaacctctttctttgataaattacccagtctccggtatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTTAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCGTGGTCTTTCTTTTCCCCTCATGAGGCCCAAGTGATCTGCATGGCCAGCCCCAGCCCAAGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGAGAGGCCGAGCTCCTTTCCTGACTCCGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAGACTGATTCTCTCTCCTCATACTGGTAGCAACGGCTTCCAAGATCACAAAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGATGGGCCAatggatgaatggatggatgaat-ggaCAGTAGTCCAGGGAGGATGTCCCCGTCTGTTCAGTTTGCACTGGTTCCTGTGCAgtcacatagctccctgctagctgagttgaaattaaaacccattcagtc-----------tgactcatggggcctgtgGActggactctccttttcccttcaca-cccatccccattcagtccgtgagtaaatcatacaggtgacaccttcacaatgatcctgaggtgacactactcatcgcctgccttctcccacctagtttgagcacccttcattacttatctggaccagccagctggcccccatctcctccccgctggtgtggtgtggcctgttaacaccagagccacagctgagcctgcttctggccaggatcctctgctggctccccagctggtctgagtaacagctagagccttgcaacagcctcagccattgaacctgggacttctctccctgagctgtctgctgctcgcctctgctcacaccaggtcaga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2147900 3596 + 4569836 gagtttcccatgtgaatctaatgcctgatgatctgtcactgtctcccatcacccctagatgggatcatgtagatgcaggaaaacaagctcaaggctcccactgatcctacattatggtgagttgcataattttttcattgtatattgcaatgtattaatagtagaaataaagtgcacaataaatgtaatgggcttgaatcagccccaaatcatcccttcccctctccttggcccatgggaaagttgttttccacaaaactggtctctggtgccaaaaaggttggggactgctgGTGTAAATGCTTCTAAGAATAGATAAGCAACTTAAGGTTTACATGGTACTAAAAATATGGGTTTCAATGCTAATAAATCTGGAGGCACATGAAAACA-TCTCTTGCTGCGGTCCAGTGAATCTTGACCATTCTATCACAGAGACTTGCAGCTTTGAGTTGGAGCTGTCCCCCGGACCTCCTGTCcacagcacacccgtgca--acacacacacacac--atgaacacacacacatgcacatacat----acatgttcagatacctgcacacacatacacacaTGCTGTGCTTCATGCCCTCACTAAGATGGCATGGGAGGGAATGAGTGTTTTTAAGAGAAATGAAGACAACTCAGGCTTCTTGTTCTCCTGGTGTTTGCACAAGTGCCTTCTCCACAGACCATGCTTCAGTCTCTTTCTTAGTTCTCCTTCTTACTGAA--AGAGAAGCAGAGCCCCAGCATGTATCCAACTGCTTAGGGTCCAACCCAAGTTCATAAGCTTCCTGGGGAGCCTAGTGAGATGAAGGTACTGCAGAGCCTCCCAAAAAGAGACATCAGCTTTTGGTGGAAGCTTGAGCCCGGGAAGGTGGGACATTATGGTTCATCAAAGACACAACCAAAATCCAGTGAGGAATGGCAGTCATCAAAAGTTTTATTCTTCAAGAGAAGGGGTTCTCAGGGGCTGTAGGCAGCAGGCACAGAGCTCTTTAGTGCACATGTGGGCAGGTGACGGTGACCTACAGTTTGCACTGGGAACTAAGATCAAGAGTGACTTGACctctgctcatgtccatctctccctgtctctct----accttttatgtctctctccttatctctctccccatgctacctctcagcctcctctgtctct------ctccccatctctcttcctctctctaactcctttctccccatgtctctttctgtctccgtcttttccacgtctctctcccttctcctctccctctctGCCACTGTTCAGGCTCCTGTCCCATCCCCCG----GTGCAGAGAGGTGCACGCAGGACTCCTAGGCTACCTTCCAGGGCACACGCACAGGGCTGCAAGGCCTTGGTCCCAGCACAGCGCCCCCACCTCCCAGTGGCCTCAAGGTCAGGGGTGTGGGGTGTGCTTGTGCTCTCCTGGGTGGGCACCGCACGCTCCAGGAAGCAGAAGCTGCAGGTCACTGCTGGCTCGAGTGGCACGCCTATTGGACTGCTGGCTTCCATCCTGTGATCTGCTGAGGCCAAAGTAGAGGGCACCCGCCAAGGCCCTACCCTGCACCAgggttggggtagaggtaggggtagtggtggggATGGGAGCAGCCACTGCAATCCGGTCCTTGCCCGGCATCCTGCCCTGAACTCTGCCATGCAAGGCCTCCTCTGCCACCCTTTCCCTGCCCCTCACCATCTCCACCCCTAGAAAGCCCCAGGCACAGGCTCCAGAAATCTCCCTGGATCCAGAAGCTAAGAGCAACCACTGGGCCCCACAGCCCCTAGGCCAGGTGTCAGCCACACCCACTGCATGCTGACTGATCTTGGCTCTCACTTATACCCCACC--CCAAGCCAGCCACACTCTGCCCCCACACCCCCCAGCATAACCACCTCTTCCTGACTTTAGCCCTGACTGACAGTGCTGCCTCCTGGTAACCTTTCTCCCTCCCCACAAGGTCCAGGCAAGCCCAAATGCCAGCACCCGCCACCC-CCCTTCCGGGGTGCCACTCTATTGTCTGCTTGTCTAGATGTCTCAACCTCATTTTACCAAGATAGAACAAACAACA-GGATGAGCCCCCAGCCTCTCCCAGGAAGATTTGGCAAAACGCCCTCCATTTAGAAGCA-GAGCAGTGACAGGACCTAGGGATGACCCGAGGCTTGTCACCCAAGCAGCAAGAAGGGCAGGGAGCCCAGTTTTATGCCCTCACCTTGGGAGGACGTGGCCAGGGCTCCACAGGGCCCTGTGGGGGGCTGGCAGGAGAACAGATCCACCCTCCTTTTGAGGAAGCAGGCCCCACCCCCAGGAAGCAGCAGAAGGGGGCGCACAGGCAGAGCTCCCGCAAGCTGTAGAGCAGGGCCAGCAGTTCTGCACTCAGCCTCAGCCCCTGGGGAGCTACAAGACAGAGTGAGACCCtgataggtttggctctgtgtccccacccaaatctcatcttgagctgtaatccccatgtgtcaagggaggaacctcgtgggaggtgattggattatagggggctgggttcccccatgttgttcccctgatagtgagtgagttctcagaagagcagatggtttcaaagcatggcacttcctcgttttctcactcactccctcctgctgccttgtgaagaaggtgcctgcttcttctttgccttccaccatgattgtaagtttcctgcactgtgagtcaattcaacctctttctttgataaattacccagtctccggtatttctttatagcagcgtg-----aaaacaaactaagacaGACCCCTTCTCTGAGGTGCCTTCTCCTTAGGCCACCAGCTGCCCCCATGCTCCTCCTCTGCCCCGTGGTCTTTCTTTTCCCCTCATGAGGCCCAAGTGATCCGCATGGCCAGCCCC------AGCCCCATCCTACTGCAGGCCTGTCTAGCTGGTGGACAGGCTGAGCTCCTTTCCTGACTCTGAGGCTGGCTGATATGCTCTCTGGATCCTGGAGGAAACTGATTCTCTCTCCTCATACTGGTAGCAACTGCTTCCAAGACCACACAGCTGGAAAACTGGTCTTTTTGTTGTCTCCACTTGCTAGGGCTGTAGTTGGGACAGTACTAGAGATAGGCCAatggatgaatggatggatgaat-ggaCAGTAGTCCAGGGAGGATGTCCCTGTCTGTTCAGTTTACACTGGCTCCTGTGCAgtcacaaagctccctgctagctgagttgaaattaaaacccattcagtc-----------tggctcatggggcctgtgGActggactctccttttccctccaca-cccatccccattaagtccatgagtaaatcatataggtgacaccttcacaatgatcctgaggtgacactactcatcacctgccttctcccacctagtctgagcgcccttcattacctacctggaccagccagctggcccccatctcctccctgctggtgtggtgtggcctggtaacaccagagccacagctgagcccgcttctggccgggatcctctgctggctccccagctgctctgagtaacggctagagccttgcaacagcttcagccattgaacctgggacttctctccctgagctgtctgctgctcgcctctgctcacaccaggccaga i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=5693628.000000 s hg38.chr17_GL383564v2_alt 106856 1226 + 133151 tgcaggcttcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttgggtgacccaccacctcctgcaaacattgctcgaaccttgcctcgtcaatgaggactacaaccccggccacgcatctagaaGGCATCCAGCACAGAGTATGTGCTCAATACACAGACAAAGCAGGACAATACATGAGACAACTGTCCCTCTCCCAGGCCCCTGGGAAATGCTG-GGATGGGGAAGATATTCAGATGTCAAGAggaatagggcccagtgtcttgattctcattccagtgctcttcctgttcaCAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGGCCGCTGAGCATCTTACCCACCCACAGCCTTTCCCAGTGTTCTGGGAGAT-AAACAGCTGTCTCCTATATTGTCCTGGATCCCTGGAGGATGGGCCAGGCTTGGAGGTGGAAGAAGAGCTCAGTGGGGAGGGGGCCGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCCCCAAATCTGCATCAGGGCAGATGAGTAGAGCTGCACTCTCCCAACCTGCTCATGTTGGCCTTTTGTGATCTTTCATTTTG-CCCCATCCGCGTTGCCCTTAGGTATTCATTGCTACCTGTTATCACTGGAATAAAAATGGCCATGGGCATTCTGCCCTTCCTCCACCTCCCTCTTCTCCATCCCTTCTTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGGCCCCttctagatgcatggccagggttgtcctcattgatgaagcaaggtttgagcaaggtttgtaggaggtgatgggtcagccaagcagttttctaggcagagagcattccaggcagcgggaatggcttgtgcaaaggccctgaggcaggagcatgattggcatgcctgaggcccagaggggaagcctgcatctggcctggtgtgagctaggggagagcaggagatagctcagggagagaaggcccaggttcaatgacctgaggccactgcaaggcttcagctctcccttggagcagctggggagccattgag-------------cagagCAAGAGCCAAACTGAACGGGTTCCAATTTCAGCTTAGCTATCAGGGAGCTATGTGACTGCACCAGGTCCAGGCGGACCCACCTGTACATGAGTGACAGCACCC s panTro5.chr17 16296007 1199 + 83181570 tgcaggcttcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttgggtgacccaccacctcctgcaaacattcctcgaaccttgccttgtcaatgaggactacaaccccggccacgcatctagaaGGCATCCAGCACAGAGTATGTGCTCAATACACAGACAAAGCAGGACAATACATGAGAAAACTGTCCCTCTCCcaggcccctgggaaatgctg----------------------------aggaatagggcccagtgtcttgattctcattccagtgctcttcctgttcaCAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGGCCGCTGAGCATCTTCCCCACCCACAGCCTTTCCCAGTGTTCTGGGAGAT-AAACAGCTGTCTCCTATATTGTCCTGGATCCCTGGAGGATGGGCCAGGCTTGGAGGTGGAAGAAGAGCTCAGTGGGGAGGGGGCGGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCCCCAAATCTGCATCAGGGCAGATGAGTAGAGCTGCACTCTCCCAATCTGCTCATGTTGGCCTTTTGTGATCTTTGATTTTG-CCCCATCCGCGTTGCCCTTAGGTATTCATTGCTGCCTGTTATCACTGGAATAAAAATGGCCATGGGCATTCTGCCCTTCCTCCACCTCCCTCTTCTCCATCCCTTCTTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGGCCCCttctagatgcatggccagggttgtcctcattgatgaagcaaggtttgagcaaggtttgtaggaggtgatgggtcagccaagcagttttctaggcagagagcattccaggcagcgggaatggcttgtgcaaaggccctgaggcaggagcatgattggcatgcctgaggcccagaggggaagcctgcatctggcctggtgtgagctaggggagagcaggagatagctcagggagagaaggcccaggttcaatgacctgaggccactgcaaggctttagctctcccttggagcagctagggagccattgAG-------------CAGTGCAAGAGCCAAACCGAAAGGGTTCCAATTTCAGCTTAGCTATCAGGGAGCTATGTGACTGCACCAGGTCCAGGCGGACCCACCTGTACATGAGTGACAGCACCC i panTro5.chr17 C 0 I 1 s panPan2.chr17 16200871 1200 + 83442489 tgcaggcttcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttgggtgacccaccacctcctgcaaacattcctcgaaccttgccttgtcaatgaggactacaaccccggccacgcatctagaaGGCATCCAGCACAGAGTATGTGCTCAATACACAGACAAAGCAGGACAATACATGAGACAACTGTCCCTCTCCcaggcccctgggaaatgctg----------------------------aggaatagggcccagtgtcttgattctcattccagtgctcttcctgttcaCAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGGCTGCTGAGCATCTTCCCCACCCACAGCCTTTCCCAGTGTTCTGGGAGATAAAACAGCTGTCTCCTATATTGTCCTGGATCCCTGGAGGATGGGCCAGGCTTGGAGGTGGAAGAAGAGCTCAGTGGGGAGGGGGCCGAGAAGAGGCTGCCCAGAGGTGACACATCTGGAGTCCCCAAATCTGCATCAGGGCAGATGAGTAGAGCTGCACTCTCCCAACCTGCTCATGTTGGCCTTTTGTGATCTTTGATTTTG-CCCCATCCGCGTTGCCCTTAGGTATTCATTGCTACCTGTTATCACTGGAATAAAAATGGCCATGGGCATTCTGCCCTTCCTCCACCTCCCTCTTCTCCATCCCTTCTTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGGCCCCttctagatgcatggccagggttgtcctcattgatgaagcaaggtttgagcaaggtttgtaggaggtgatgggtcagccaagcagttttctaggcagagagcattccaggcagcgggaatggcttgtgcaaaggccctgaggcaggagcatgattggcatgcctgaggcccagaggggaagcctgcatctggcctggtgtgagctaggggagagcaggagatagctcagggagagaaggcccaggttcaatgacctgaggccactgcaaggcttcagctctcccttggagcagctggggagccattgAG-------------CAGTGCAAgagccaaactgaatgggttccaatttcagcttagctatcagggagctatgtgacTGCACCAGGTCCAGGCGGACCTACCTGTACATGAGTGGCAGCACCC i panPan2.chr17 C 0 I 1 s gorGor5.CYUI01015385v1 4035905 1226 + 4267968 tacaggcttcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttgggtgacccaccacctcccgcaaacattgctcgaaccttgcctcgtcaatgaggactacaaccccggccacgcatctagaaGGCATCCAGCACAGAGTATGTGCTCAATACACAGACAAAGCAGGACAATACATGAGACAACTGTCCCTCTCCCAGGCCCCTGGGAAATGCTG-GGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGTGTCTTGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAACACTGAGATGAGTTTCAAGGGCTGCTGAGCATCTTCCCCACCCACAGCCTTTCCCAGTGTTCTGGGAGAT-AAACAGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGCTTGGAGGTGGAAGAAGAGCTCAGTGGGGAGGGGGCCAAAAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCCCCAAATCTACATCAGGGCAGATGAGTAGAGCTGCACTCTCCCAACCTGCTCATGTTGGCCTTTTGTGATCTTTGATTTTG-CCCCATCCGCGTTGCCCTTAGGTATTCATTGCTACCTGTTATCACTGGAATAAAAATGGCCATGGGCATTCTGCCCTTCCTCCACCTCCCTCTTCTCCATCCCTTCTTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGGCCCCttctagatgcatggccagggttgtcctcattgatgaagcaaggtttgagcaaggtttgtaggaggtgatgggtcagccaagcagttttctaggcagagagcattccaggcagcgggaatggcttgtgcaaaggccctgaggcaggagcatgattggcatgcctgaggcccagaggggaagcctgcatctggcctggtgtgagctaggggagagcaggagatagctcagggagagaaggcccaggttcaatgacctgaggccactgcaaggctttagctctccctcggagcagctggggagccattgAG-------------CAGTGCAAgagccaaactgaacgggttccaatttcagcttagctatcagggagctatgtgacTGCACCAGGTCCAGGCGGACCCACCTGTACATGAGTGACAGCACCC i gorGor5.CYUI01015385v1 C 0 I 1 s nomLeu3.chrUn_GL397460_1 2018561 1226 - 2193130 cgcatacttcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttgggtgacccaccacctcctgcaaaccttgctcgaaccttgcctcgtcaatgaggactacaaccccggccatgcatctagaaGGCATCCAGCACAGAGTGTGTGCTCAATACACAGATGAAGCAGGACAATACGTGAGACAGCTGTCCCTCTCCCAGGACCCTGGGAAATGCTT-GGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGTGTCTGGGTTCTCATTCCAGTACTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAAGGCCACTGAGCATCTTCCCCACCCACAGCTTTTCCCAGTGTCCTGGGAGAT-GCACAGCTGACTCCTGTGTTGTCCTGGATCCCTGGAGGATGGGCCAGGCTTGGAGGTGGAAGAAGACTTCAGTGGGGAGGGGGCCGAGAAGGGGTTGCCCAGAGGCGACACATCTGGAGTCCCCAGATCTGCATCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGTTGGCCTTTTGTGATCTTTGGTTTTG-CCCCATCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTATCACTGGAATAAAAATGGCCATGGGCATTTTGCCCTTCCTCCACCTCCCTCTTCTCCATCCCTTCCTTCTTCGTCTGTGTATTGAGCACATACCCTGTGCTAGGTGCCttctagatgcatggccagggttgtcctcattgatgaagcaaggtttgagcaaggtttgtaagaggtgatgagtcagccaagcagttttctaggcagagagcattccaggcagcgggaatggcttgtgcaaaggccctgaggcaggagcatgattggcatgcctgaggcccagaggggaggcctgcatctggcctggtgtgagctaggggagagcaggagatagctcagggagagaaggcccaggttcaatgacctgaggccactgcaaggctttagctctcactcggagcagctggggagccattgAG-------------CAGTGCAAGAGCCAAACCGAATGGGTTCCAGTTTCAGCTTGGCTATCAGGGAGCTATGTGACTGCACCAGAGCCAGGCAGACCCACCTGTACATGATTGACAGCACCC i nomLeu3.chrUn_GL397460_1 C 0 I 1 s rheMac8.chr16 30089193 1219 - 77216781 tgcagacctcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaaaatatctgcttggatgacccgtcacctcctgcaaaccttatttgaacctttcctcatcaatgagacctacaaccctggccaTGCATCT-GAAGGCATCCAGCACAT-GCAT---CTCAATACACAGACGAAGCAGGACAATACATGAGACAGCTGTCCCTCTCCCAGGACCCTGGGAAATGCTGGGGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGCATCTGGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGCCCACTGAGCATCCTCCCTACCCACAGCCTTTCCTAGTGTCCTGGGAGAT-GCACGGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGTTTGGAAGTAGAGGAAGAGCTCAGTGGGGAGGGGGTTGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCTCCAAATCTGCACCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGTTGGCCTTTTGTGATCTTTGGTTTTGCCCCCGTCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTA-CACTGGAATAAAAATGACCATCAGCATTCTGCCCTTCCTCCACCGCCCTCTTGTCCATCCCTTCCTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGACGCCttctagatgcatggccaggcttgtcctcattgacgaagcaaggtttgagcaaggtttgtaggaggtgatgggtgagccaagcaattttctaggcagagagcattc----------------tctgtgcaaaggccctgaggcaggagcatgaccggcatgcctgaggcccagaggggaagcctgcatctggcctggtgagagctaggggagatcgggagaccgctcagggagagaaggcccaggttcaatgacctgaggccattgcaaggctttagctctcactcaaagcagctggggagccattgagagagctGGGGAGCCAGTGCGAgagccaaactgaatgggttccaatttcagctcagctagcaggaagctatgtgactgcaccagggccaggcaaacccacctgtgcatgagtGACAGCACCC i rheMac8.chr16 C 0 I 1 s macFas5.chr16 28001453 1219 - 80997621 tgcagacctcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaaaatatctgcttggatgacccgtcacctcctgcaaaccttatttgaacctttcctcatcaatgagacctacaaccctggccaTGCATCT-GAAGGCATCCAGCACAT-GCAT---CTCAATACACAGACGAAGCAGGACAATACATGAGACAGCTGTCCCTCTCCCAGGACCCTGGGAAATGCTGGGGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGCATCTGGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGCCCACTGAGCATCCTCCCTAGCCACAGCCTTTCCTAGTGTCCTGGGAGAT-GCACGGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGTTTGGAAGTAGAGGAAGAGCTCAGTGGGGAGGGGGCTGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCTCCAAATCTGCACCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGTTGGCCTTTTGTGATCTTTGGTTTTGCCCCCGTCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTA-CACTGGAATAAAAATGACCATCAGCATTCTGCCCTTCCTCCACCGCCCTCTTGTCCATCCCTTCCTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGACGCCttctagatgcatggccaggcttgtcctcattgacgaagcaaggtttgagcaaggtttgtaggaggtgatgggtgagccaagcaattttctaggcagagagcattc----------------tctgtgcaaaggccctgaggcaggagcatgaccggcatgcctgaggcccagaggggaagcctgcatctggcctggtgagagctaggggagatcaggagacagctcagggagagaaggcccaggttcaatgacctgaggccattgcaaggctttagctctcactcaaagcagctggggagccattgagagagctGGGGAGCCAGTGCGAgagccaaactgaatgggttccaatttcagctcagctagcaggaagctatgtgactgcaccagggccaggcaaacccacctgtgcatgagtGACAGCACCC i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 2059154 1219 + 10377808 tgcagacctcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttggatgacccgtcacctcctgcaaacgttatttgaacctttcctcatcaatgagacctacaaccctggccaTGCATCT-GAAGGCATCCAGCACAT-GCAT---CTCAATACACAGACGAAGCAGGACAATACATGAGACAGCTGTCCCTCTCCCAGGACCCTGGGAAATGCTGGGGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGCATCTGGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGCCCACTGAGCATCCTCCCTACCCACAGCCTTTCCTAGTGTCCTGGGAGAT-GCACGGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGTTTGGAAGTAGAGGAAGAGCTCAGTGGGGAGGGGGCTGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCTCCAAATCTGCACCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGTTGGCCTTTTGTGATCTTTGGTTTTGCCCCCGTCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTA-CACTGGAATAAAAATGACCATCAGCATTCTGCCCTTCCTCCACCGCCCTCTTGTCCATCCCTTCCTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGACGACttctagatgcatggccaggcttgtcctcattgacgaagcaaggtttgagcaaggtttgtaggaggtgatgggtgagccaagcaattttctaggcagacagcattc----------------tctgtgcaaaggccctgaggcaggagcatgaccggcatgcctgaggcccagaggggaagcctgcatctggcctggtgagagctaggggagatcaggagacagctcagggagagaaggcccaggttcaatgacctgaggccattgcaaggctttagctctcactcaaagcagctggggagccattgagagagctGGGGAGCCAGTGCGAgagccaaactgaatgggttccaatttcagctcagctagcaggaagctatgtgactgcaccagggccaggcaaacccacctgtgcatgagtGACAGCACCC i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1944088 1193 - 8458610 tgcagacctcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttggatgacccgtcacctcctgcaaaccttatttgaacctttcctcatcaatgagacctacaaccctggccaTGCATCT-GAAGGCATCCAGCACAT-GCAT---CTCAATACACAGACGAAGCAGGACAATACATGAGACAGCTGTCCCTCTCCCAGGACCCTGGGAAATGCTGGGGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGCATCTGGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGGCCACTGAGCATCCTCCCTACCCACAGCCTTTCCTAGTGTCCTGGGAGAT-GCACGGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGTTTGGAAGTAGAGGAAGAGCTCAGTGGGGAGGGGGCTGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCTCCAAATCTGCACCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGCTGGCCTTTTGTGATCTTTGGTTTTGCCCCCGTCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTA-CACTGGAATAAAAATGACCATCAGCATTCTGCCCTTCCTCCACCGCCCTCTTGTCCATCCCTTCCTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGACGCCttctagatgcatggccaggcttgtcctcattgacgaagcaaggtttgagcaaggtttgtaggaggtgatgggtgagccaagcaattttctaggcagagagcattc----------------tctgtgcaaaggccctgaggcagga-------------gcctgaggcccagaggggaagcctgcatctggcctggtgagagctaggggagatcaggagacagctcagggagagaaggcccaggttcaatgacctgaggccattgcaaggctttagctctcactcaaagcagctggggagccattgAG-------------CAGTGccagagccaaactgaatgggttccaatttcagctcagctagcagggagctatgtgactgcaccagggccaggcaaacccacctgtgcatgagtGACAGCACCC i cerAty1.NW_012006043v1 C 0 I 12 s manLeu1.NW_012106252v1 2129122 1210 + 4244037 tgcagacctcccctctgggcctcaggcatgccggtcatgctcctgcctcagggcctttgcatgagtcattcccactgcctggaatgctctctgccaagatatctgcttggatgacccgtcacctcctgcaaaccttatttgaacctttcctcatcaatgagacctacaaccctggccaTGCATCT-GAAGGCATCCAGCACAGAGTATGTGCTCAATACACAGACGAAGCAGGACAATACATGAGACAGCTGTCCCTCTCCCAGGACCCTGGGAAATGCTGGGGATGGGGAAGATGTTCAGATGTCAAGAGGAATAGGGCCCAGCATCTGGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCACATTTGGAGCAAAACTGAGATGAGTTTCAAGGGCCACTGAACATCCTCCCTACCCACAGTCTTTCCTAGTGTCCTGGGAGAT-TCATGGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGTTTGGAAGTAGAGGAAGAGCTCAGTGGGGAGGGGGCTGAGAAGGGGCTGCCCAGAGGTGACACATCTGGAGTCTCCAAACCTGCACCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGTTGGCCTTTTGTGATCTTTGGTTGTGCCCCCGTCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTA-CACTGGAATAAAAATGACCATCAGCATTCTGCCCTTCCTCCACTGCCCTCTTGTCCATCCCTTCCTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGACGCCttctagatgcatggccaggcttgtcctcattgacgaagcaaggtttgagcaaggtttgtaggaggtgatgggtgagccaagcaattttctaggcagagagcattc----------------tctgtgcaaaggccctgaggcaggagcatgaccggcatgcctgaggcccagaggggaagcctgcatgtggcctggtgagagctaggggagatcaggagacagctcagggagagaaggcccaggttcaatgacctgaggccattgcaaggctttagctctcactcaaagcagctggggagccattgAG-------------CAGTGccagagccaaactgaatgggttccagtttcagctcagctagcagggagctatgtgactccaccagggccaggcaaacccacctgtgcatgagtGACAGCACCC i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2151496 1211 + 4569836 tgcagacttcccctctgggcttcaggcatgccggtcatgctcctgcctcagggcctttgcatgagccattcccactgcctggaatgctctctgccaagatatctgcttggatgacccatcacctcctgcaaaccttatttgaacctttcctcatcaatgagacctacaaccctggccaTACATCT-GAAGGCATCCAGCACAGAGTATGTGCTCAATACACAGACGAAGCAGGACAATACATGAGACAGCTATCCCTCTCCCAGGACCCTGGGAAATGCTGTGGATGGGGAAGATGTTCAGACGTCAAGAGGAATAGGGCCCAGCGTCTGGGTTCTCATTCCAGTGCTCTTCCTGTTCACAGGAGTGGCAGGGCTGCGCATTTGGAGCAAAACTGAGATGAGTTTCAAGGGCCACTGAGCATCCTCCCTACCCACAGCCTTTCCCAGTGTCCTGGGAGAT-GCACGGCTGTCTCCTGTATTGTCCTGGATCCCTGGAGGATGGGCCAGGTTTGGAAGTGGAGGAAGAGCTCAGTGGGAAGGGGGCTGAGAAGGGGCTGCCCAGAGGTGGCACATCTGGAGTCTCCAAATCTGCACCAGGGCAGATGAGTAGAGCTGCACTCTCCCACCCTGCTCATGTTGGCCTTTTGTGATCTTTGGTTTTGCCCCCGTCTGCGTTGCCCTTAGGTATTCATTGCTACCTGTTATCATTGGAATAAAAATTACCATCAGCATTCTGCCCTTCCTCCACCGCCCTCTTCTCCATCCTTTCCTTCTTCATCTGTGTATTGAGCACATACCCTGTGCTGGATGCCTTCTAGAGGCAtggccaggcttgtcctcgttgacgacgcaaggtttgagcaaggtttgtagggggtgatgggtcagccaagcaattttctaggctgagagcattc----------------tttgtgcaaaggccctgaggcaggagcatgaccggcatgcctgaggcccagaggggaagcctgcatctggcctggtgtgagctaggggagatcaggagacagctcagggagagaaggcccaggttcaatgaactgaggccattgcaaggctttagctctcactcaaagcagctggggagccattgag-------------cagagCGAgagccaaactgaatgggttccaatttcagctcagctagcagggagctatgtgactgcaccagggccaggcaaacccacctgtgcatgagtGACAGCACCC i colAng1.NW_012122154v1 C 0 I 1 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C a score=35948.000000 s hg38.chr17_GL383564v2_alt 108082 12 + 133151 ACAGGGTCCAGA s panTro5.chr17 16297207 12 + 83181570 ACAGGGTCCAGA i panTro5.chr17 I 1 C 0 s panPan2.chr17 16202072 12 + 83442489 ACGGGGTCCAGA i panPan2.chr17 I 1 C 0 s gorGor5.CYUI01015385v1 4037132 12 + 4267968 ACAGGGTCCAGA i gorGor5.CYUI01015385v1 I 1 C 0 s nomLeu3.chrUn_GL397460_1 2019788 12 - 2193130 ACAGGGTCCAGA i nomLeu3.chrUn_GL397460_1 I 1 C 0 s rheMac8.chr16 30090413 12 - 77216781 ACGGGTTCCAGA i rheMac8.chr16 I 1 C 0 s macFas5.chr16 28002673 12 - 80997621 ACGGGTTCCAGA i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2060374 12 + 10377808 ACGGGTTCCAGA i macNem1.NW_012014910v1 I 1 C 0 s manLeu1.NW_012106252v1 2130333 11 + 4244037 ATGGGTTCCAT- i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2152708 12 + 4569836 ACGGGTTCCAGA i colAng1.NW_012122154v1 I 1 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C e cerAty1.NW_012006043v1 1945281 12 - 8458610 I a score=11693321.000000 s hg38.chr17_GL383564v2_alt 108094 2488 + 133151 GCTCACATGTCCATGGGTCCAGCTCAGTGCCTGGCATGCCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTCTTGCTTTGGAATGCACGCAGACACTGGGCAAGTATATATGGAGCTTTTAATCTCTGCCTGACACCAGAGACACATCCACAGACTGACCGAGTTTCCTGCCCTTGTGCTGCACTCCCCTTGAGGAGACAGACGACGGTGACATGCAAGGAGCTAAGATGTCAGGACACTGAGCTGTGAACGAGGCAAGCAGGGGCTGAGGGATGGAGGAGACAGGGTGGTGGCAGGTGGGGGTGGCCGGGATGGCTGGAGCCTGGGACCAAGGTAGGTTCCTGCACTGCTCTGCGTGGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAGGCTGGCACTGTGCATCCCCTTCCCCACTGCTGAAGATGCCGCC----TAGGGTGGGCTCACAGTCTTTGGGGAGTTAAGAACCATCCTGATCCTAGAGAAGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGAGCCTCTCATCCTCCCCATAGCCTTTGCATTGGGCAGTGAAGGCGTTTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCACTTGGGGTGTCAGCTTtcatctcacttagtcctcacgggggcc-tgcaaagtaagggtcaccatcggcccaatttacagatgaggacactgaggttcagagaagttacatgatttgcccaaagtgacacagctactaagtggctgaatgggattgaatccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCACGGATGAGCAGG-----------TAAAGTGAAACAAACACTTTAGAAAGCTTACCTGAGGGTGAGGGGGCAGGCAATTGAGCCTTCTGTGGGGTCCGAAATGTTTAcagttgtctctctgcgtacgtcgggaatcagtttcaccacctcccacaaataccaaaatccacagatgctccagtcttgatataaaatggtacagtatttgcatataacctaagcacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagatagcaacatttcagtccgtgccagaatgcatatagaatggtggtcccataaggttata------------atggagctgCCCTATACAGGTGTACCATCTCTAAAAATTGATATCTAAAAagagatggggtctttttatgttgcccagactagtctagaacttctgggctcaagtgatcctcccggcatggtctctcaaagtgctgggattat-aggcatgaaccactacatctggccaggtgtaccaatttttttttttttttatcatttatactgtatttttatcattcttttctgtgtttagatacacaaatagccatcattgtgttaccactacctatggtactcagtatggtaacatgctgcagaggtttggagcccaggagcaatcagctctaccattcagccaaggtgtgtGTTTGGTTGCAACCTCTgaaggaagctaaggaggaatgacctaaagacagaaggtgagtccgaggtgggatcctgggacaggtaccagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATATTAATATAGTGACAGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttttt-aagagagaaagtctcattctgtcgcccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatctcttgggctcaagcgatcctcctgcttcagcctcctgattaggtgggactataggcacacgccaccatgcctggctccttatttttttttttttttttttttaacttttctccagggatagggtctacctatgttgcccaggctggtctcaaactccaggactcaaatgaaccttaacctcctgccttggcctctcaaactgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggggcagctggacggaaggtgtcggagtacactataatgccttttcagtttttctatatatctaaaatcatttcaaaagtaaacatttattttaaaaCATGGACGTGGTTATCCTTCCATGAGTGTAAAGTACAAAAGGCAGGCTCATGGTGTTGTCAGAAGTCAGAACACTGGTTGCAGGGCTGGGGGCGC----AGAGGCTGGGTTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTTAGAGCTGTGCACTTTCTTCATAAATTTTCATAAGTTTAACAAAAAAGTAAAACGAGGATGGGAAGCTTGTTTGGGTTGTGGG s panTro5.chr17 16297219 2476 + 83181570 GCTCACATGTCCATGGGTCCAGCTCAGTGCCTGGCATGCCGAGAGTACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTCTTGCTTTGGAATGCACTCAGACACTGGGCAAGTATATATGGAGCTTTTAATCTCTGCCTGACACCAGAGACACATCCACAGACTGACCGAGTTTCCTGCCCTTGTGCTGCACTCCCCTTGAGGAGACAGACGACGGTGAAATGCAAGGAGCTAAGATGTCAGGACACTGAGCTGTGAAGGAGGCAAGCAGGGGCTGAGGGATGGAGGCGACAGGGTGGTGGCAGGTGGGGGTGGCCGGGATGGCTGGAGCCTGGGACCAAGGTAGGTTCCTGTGCTGCTCTGCGTGGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAGGGTGGCACAGTGCATCCC-TTCCCCACTGCTGAAGATGCTGCC----TAGGGTGGGCTCACAGTCTTTGGGGAGTTAAGAACCATCCTGATCCTAGAGAAGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGAGCCTCTCATCCTCCCCATAGCCTTTGCATTGGGCAGTGAAGGCGTTTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCACTTGGGGTGTCAGCTTtcatctcacttagtcctcatgggggccctgcaaagtaagggtcaccatcggcccaatttacagatgaggacactgaggttcagagaagttacacgatttgcccaaagtgacacagctactaagtggctggatgggattgaatccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCACGGATGAGCAGG-----------TAAAGTGAAACAAACACTTTAGAAAGCTTACCTGAGGGTGAGGGGGCAGGCAATTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctctgcgtacgtcgggaatcagtttcaccacctcccacaaataccaaaatccacagatgctccagtcttgatataaaatggtacagtatttgcatataacctaagcacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagatagtaacatttcagtccgtgccagaatgcatatagaatggtggtcccataaggttata------------atggagctgCCCTATACAGGTGTACCATCTCTAAAAATTGATATCTAAAAagagatggggtctttttatgttgcccagactagtctagaacttctgggctcaaatgatcctcccggcatggtctcccaaagtgctgggattat-aggcacgaaccactactcctggccaggtgtaccaattttttttttta---atcatttatactgtatttttatcatccttttctgtgtttagatacacaaatagccaccgttgtgttaccactacctatggtactcagtatggtaacatgctgcagaggtttggagcccaggagcaatcagctctaccattcagccaaggtgtgtgtttggttgtagcctctgaaggaagctaaggaggaatgacctaaagacagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATATTAATATAGTGACAGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttttttaagagataaagtctcattctgtcgcccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatctcttgggctcaagcgatcctcctgcttcagcctcctgattaggtgggactataggcacacgccaccatgcctggctcctt----------ttttttttttttaacttttctccagggatagggtctacctatgttgcccaggctggtctcaaactccaggactcaaatgaaccttaacctcctgcctcggcctctcaaattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggggcagctggacggaaggtgtcggagtacactataatgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaCATGGAGGTGGTTATCCTTCCATGAGTGTAAAGTACAAAAGGCAGGCTCATGGTGTTGTCAGAAGTCAGAACACTGGTTGCAGGGCTGGGGGCGC----AGAGGCTGGGTTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTTAGAGCTGTGCACTTTCTTCATAAATTTTCATAAGTTTAACAAAAAAGTAAAACGAGGATGGGAAGCTTGTTTGGGTTGTGGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16202084 2474 + 83442489 GCTCACATGTCCATGGGTCCAGCTCAGTGCCTGGCATGCCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTCTTGCTTTGGAATGCACGCAGACACTGGGAAAGTATATATGGAGCTTTTAATCTCTGCCTGACACCAGAGACACATCCACAGACTGACCGAGTTTCCTGCCCTTGTGCTGCACTCCCCTTGAGGAGACAGATGACGGTGACATGCAAGGAGCTAAGATGTCAGGACACTGAGCTGTGAAggaggcaggcaggggctgagggatggaggcggcagggtggtggcaggtgggggtggccgggatggctggagcctgggaCCAAGGTAGGTTCCTGCACTGCTCTGCGTGGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAGGGTGGCACAGTGCATCCCCTTCCCCACTGCTGAAGATGCCGCC----TAGGGTGGGCTCACAGTCTTTGGGGAGTTAAGAACCATCCTGATCCTAGAGAAGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGAGCCTCTCATCCTCCCCATAGCCTTTGCATTGGGCAGTGAAGGCGTTTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCACTTGGGGTGTCAGCTTtcatctcacttagtcctcatgggggccctgcaaagtaagggtcaccatcggcccaatttacagatgaggacactgaggttcagagaagttacacgatttgcccaaagtgacacagctactaagtggctgaatgggattgaatccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCACGGATGAGCAGG-----------TAAAGTGAAACAAACACTTTAGAAAGCTTACCTGAGGGTGAGGGGGCAGGCAATTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctctgcgtacgtcgggaatcagtttcaccacctcccacaaataccaaaatccacagatgctccagtcttgatataaaatggtacagtatttgcatataacctaagcacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagatagcaacatttcagtccgtgccagaatgcatatagaatggtggtcccataaggttata------------atggagctgCCCTATACAGGTGTACCATCTCTAAAAATTGATATCTAAAAagagatggggtctttttatgttgcccagactagtctagaacttctgggctcaaatgatcctcccggcatggtctcccaaagtgctgggattat-aggcacgaaccactactcctggccaggtgtaccaattttttttaa-----atcatttatactgtatttttatcatccttttctgtgtttagatacacaaatagccaccgttgtgttaccactacctatggtactcagtatggtaacatgctgcagaggtttggagcccaggagcaatcagctctaccattcagccaaggtgtgtgtttggttgtagcctctgaaggaagctaaggaggaatgacctaaagacagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATACTAATATAGTGACAGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttttt-aagagataaagtctcattctgtcgcccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatctcttgggctcaagcgatcctcctgcttcagcctcctgattaggtgggactataggcacacgccaccatgcctggcttcct----------ttttttttttttaacttttctccagggatagggtctacctatgttgcccaggctggtctcaaactccaggactcaaatgaaccttaacctcctgcctcggcctctcaaattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggggcagctggacggaaggtgtcggagtacactataatgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaCATGGAGGTGGTTATCCTTCCATGAGTGTAAAGTACAAAAGGCAGGCTCATGGTGTTGTCAGAAGTCAGAACACTGGTTGCAGGGCTGGGGGCAC----AGAGGCTGGGTTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTTAGAGCTGTGCACTTTCTTCATAAATTTTCATAAGTTTAACAAAAAAGTAAAACGAGGATGGGAAGCTTGTTTGGGTTGTGGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4037144 2474 + 4267968 GCTCACATGTCCATGGGTCCAGCTCAGTGCCTGGCAGGCCGAGAATACTTGGGTAATGCCAACTAAGGACTTTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTCCTGCTTTGGAATGCACACAGACACTGGGCAAGTATATATGGAGCTTTTAATCTCTGCCTGACACCA---ACACATCCACAGACTGACCGAGTTTCCTGCCCTTGTGCTGCACTCCCCTTGAAGAGACAGATGACGGTGACATGTAAGGAGCTAAGATGTCAGGATGCTGAGCTGTGAAGGAGGCAAGCAGGggctgagggatggaggcgacagggtggtggcgggcgggggtggctgggatggctggagcctgggaCCAAGGTAGGTTCCTGCACTGCTCTGCGTGGGAACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAGGGTGGCACAGTGCATCCCCTTCCCCACTGCTGAAGATGCCGCC----TAGGGTGGGCTCACAGTCTTTGGGGAGTTGAGAGCCATCCTGATCGTAGAGGTGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGAGCCTCTCATCCTCCTCATAGCCTTTGCATTGGGCAGTGAAGGCATCTTCCTGTTGGGTCTGAGGAAGGGAGAAGTGGTGTCACTTGGGGTGTCTGCTTtcatctcacttagtcctcatgggggccctgcaaggtaagggtcaccatcggcccaatttacagatgaggacactgaggttcagagaagttacactatttgcccaaagtgacacagctactaagtggctgaatgggattgaatccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCACGGATGAGCAGG-----------TAAAGTGAAACAAACACTTTAGAAAGCTTACCTGAGGGTGACGGGGCAGGCAATTGAGCCTTCGGTGGGGTCTGAAATGTTTAcagttgtccctccgcgtacgtcgggaatcagtttcaccacctcccacaaataccaaaatccacagatgctccagtcctgatataaaatggtacagtatttgcatataacctaagcacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagatagcaacatttcagtccgtgccagagtgcatatagaatgctggtcccataaggttata------------atggagctgCCCTATACAGGTGTACCATCTCTAAAAATTGACATCTAAAAagagatggggtctttttatgttgcccagactagtctagaacttctgggctcaagtgatcctcccggcatggtctcccaaagtgctgggattat-aggcatgaaccactacacctggccaggtgtaccaatttttttttt-----atcatttatgctgtatttttatgatccttttctgtgtttagatacacaaatagccaccattgtgttaccactacctgtggtactcagtatggtaacatgctgcagaggtttggagcccaggagcaatcagctctaccattcagccaaggtgtgcgtttggttgtagcctctGAAGGAAGCTAAGGAGGAATGACCTAAAGACAGAAGGTGAGTCTGAGGTGGGATCCTGGGACGGGTACTAGAAGTTAAGCAAAAACAGGTGAAATCTGAATGAATTTCACCATATTAATATAGTGACAGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttttt-aagagataaattctcattctgtcgcccaggctggaatgcagtggtgcgatcatagctcactacttcctggatctcttgggctcaagcgatcctcctgcttcaggctcctgattaggtgggactataggcacacgccaccatgcctggctccct-------ttttttttttttttttacttttctccagagatagggtctacctatgttgcccaggctggtctcaaactccaggactcaaatgaaccttaacctcctgccttggcctctcaaattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcatcattaggggcagctggacggaaggtgtcggagtacactataatgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaCATGGAGGTGGTTATCCTTCCATGAGTGTAAAGTACAAAAGGCAGGCTCATGGTGTTGTCAGAAGTCAGAACACTGGTTGCAGGGCTGGGGGCGC----AGAGGCTGGGTTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTTAGAGCTGTGCACTTTCTTCACAAATTTTCATAAGTTTAACAAAAAAGTAAAACGAGGATGGGAAGCTTGTTTGGGTTGTGGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2019800 2476 - 2193130 GCTCACATGTCCATGGGTCCAGCTCAGTGCCTGGCATGCCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTCCTGCTTTGGAATGCACACAGACACTGGGCAAGTATATATGGAGCTTTTAATCTCTCCCTGACACCAGAGACACATCCACAGATTGACCGAGTTTCCTGCCCTTGTGCTGTACTCCCCTTGAGGAGACAGACGACGATT-TGTGTAAGGAGCTAAGATGTCAGGACACTGTGCTGTGAAGGAGGCAAGCAGGGGCTGAGGGATGGAGGAGACAGGGTGGTGGCAGGTGGGGGTGGCCGGGATGGCTGGAGCCCGGGGCCAAGGCAGTTTCCTGCACTGCTCTGCTTGGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAGGGTGGCACAGTGCATCCCCTTCCCCACTGCTGAAGATGCCACC----TAGGGTGGGCTCACAGGCTTTGGGGAGTTGAGAGCCATCCTGATCCTAGAGGTGGTTATTTCTGGAAGCAAAAATCCAGGGTTTGTGCCCCTGGGACAGGGGATCCCTGGAGCCTCACATCCTCCCCATAACCTTTGCATTGGGCAGTGAAGGCGTCTTCCTGTTGAGTCTGAGAAAGGGAGAAGTGGTGTCACTTGGGGTGTCAGCTTtcatctcacttagtcctcatgggggccctgcgaggtaagggtcaccatcagcctaatttacagatgaggacactgaggttcagagaagttacatgatttgcccaaagtgacacagctactaagtggctgaatgggattgaatccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCACGGAAGAGCAGG-----------TAAAGTGAAATAAACACTTTAGAAAGCTTACCTGAGGGTGAGGGGGCAGGCAATTGAGCCTTCTGTGGAGTCTGAAATGTTTAcagttgtccctccacatacgtcgggaatcagtttcaccacctcccacaaataccaaaatccacagatgctccagtcctgatataaaatggtacagtatttgcatataacctaagcacatcttcccatatgctttaaatcatctcaagattacttaCCTATGcaatcatgtgtcagatagcgacatttcagtccgtgccagaatgcatatagaatggtggtcccataaggttata------------atggagctgCCCTATACAGGTGTACCATCTCT-AAAATTGATATCTAAAAagaggtggggtgttttaatgttgcccagactagtctagaacttctgggctcaagtgatcctcccagcatggtctcccaaagtgctgggattat-aggcatgaaccactacacctggccaggtgtaccaatttttttttttttttatcatttatactgtatttttatgatcc-tttctgtgtttagatacacaaatagccaccactgtgttaccattgcctatggtactcagtatggtaacatgctgcagaggtttggagcccaggagaaatcagctctaccattcagccaaggtgtgtGTTTGGTTGAAGCCTCTggaggaagctaaggaggaatgacctaaagacagaaggtgagtctgaggtgggatcctgggacaggtactagaagttaagcaaaaataggtgaaatctgaatgaatttcaccatattaatataatgacggcattaataACCTTAAATAATAGTTGACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttctttt-aagagataaaatctcactctgtcgcccaggctggaaagcagtggtgtgatcatagctcactgcttcctggatctcttgggctcaagcgatcctcctgcctcagcctcctgactaggtgggactataggcacatgctaccatgcctggctcctt--------------tttttttttacttttctccagagatagggtctacctatgttgcccaggctggtctcaaactcctggactcaaatgaacctgaacctcctgccttggcctctcaaattgctgtgattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaactgtgccatggtaatgcaaaatgtcattattaggggcggccggacggagggtgttggagtacactgtaatgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaCACGGAGGTGGTTATCCTTCCATGAGTGTAAAGTACAAAAGGCAGGCTCATGGTGTCGTCAGAAGTCAGAACACTGGCTGCAGGGCTGGGGGCGCTGGGAGAAACTGGGTTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTTAGAGCTGTGCACTTTCTTTATAAATTTTCATAAGTTTAACAAAAAAGTAAAACGTGGATGGAAAGCTTGTTTGGGTGGTGGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30090425 2491 - 77216781 GCTCACATGTCTATGGGTCCAGCTCAGTGCCTGGCCTACCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTTCTGCTTTGGAATGCATGCAGACACTGGGCGAGTACCTATGGAGTTTCTAATCTCTCCCTGACACCAGAGACACATTCACAGGCTGACCAAGTTCCCTGCCCTTGTGCTGCACTCTCCTTGAGGAGACAGATGATGGTGACATGTAAGGAGCTCAGATGTC------CTGAGCTGTGAAGGAGGCAAGCAggggctgagggatggaggtggcagggtgggggcaggtgggggtggccgggATGTCTGGAGCCCAGGGCCAAGGCAGGTTCCTGCACTGCTCTGCTTAGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAAGGTGGCACAGTGTAGCCCCTTCCCCACTGCTGAAGATGCCGCCTTCGTAGGGTGGGCGCACAGGCTTTGGGGAGTTGAGAGCCACCCTGATCCCAGAGGTGGTTATTTCAGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGCAGCCTCGCATCCTCCCCATAACCTTCGCATTGGGTAGTGAAGGCCTCTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCAGTTGGGGTGTCAGCTTtcatctcacttagtcctcacaggggacctgcgaggtaagggccactattggcccaatttacagatgaggatgctgaggttcagagaagttacatgatttacccaaagtgacacagctactaagtggctgaatgggattgaacccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCATGGATGAGCAGGTAAAGTGCTCGTAAAGTGAAACCAACACTTTAGAAAGCTTACCTGGGAGTGAGGGGGCAGGCAACTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctcggcctatgtggggagtcagtttcaccacttcccacaaataccaaaatccgcggatgctccagtcctgatataaaatggtacagtatttgcatataacctaagtacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagacagtgacatttcagtccctgccagaatgcatatagaatggtggtcccataaggttatatgccctatAACCTTGGAGCTGCCATATACAGGTGTACCATCTCTAAAATATGATATCTAAAAACagatggggtctttttatgctgcccagactagtgtagaacttctgggctcaggtgatcctcccagcacagtctcccaaagtgctgggattat-aggcatgaaccaccacacctggccagatgtacca--------ttaaaaaaatcatttatactgtatttttatgatccttttctgtgtttagatacacaaataaccaccattgtgttaccattgcctgtggtactctgtacggtaacatgctgcagaggtttggagcccaggagcaatgagctgtaccattcagccaaggtgtgtgtttggttgtagcctctggaggaagctaaggaggaatgacctaaaggcagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATATTAATATAATGACGGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttt---aagagatgaagtctcactctgtcacccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatcttttgggctcaagcgatcctcctgccttagcctcctgacttggtgggactataggcacacgctaccttgcctggctac-------------ttttttttttaaacttttatccagagataggatctacctatgttgcccaggctggtctcaaactcctggactcaaatgaacctgaacctcctgcctcggcctctcaaattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggtgcagctggatggaagttgtcggagtacactgtagtgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaGATGAAGGTGGTTATCCTTCCATGAGTGTAAAGTTCAAAAGGTAGGCTCATGGTGTCGTCAGAAGTCAGAAGGCTGGGTGCAGGGCTGGGGGCTCTGGGACAGGCTGGGCTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTCAGAGCTGTGCACTTTCTTCATAAATGTTCAAAAGTTTAACCAAAAAGGAAAACGAGGATGGGAAGCTTGTTTGGGATGTGGG i rheMac8.chr16 C 0 I 113 s macFas5.chr16 28002685 2491 - 80997621 GCTCACATGTCTATGGGTCCAGCTCAGTGCCTGGCCTACCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCAACCCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTTCTGCTTTGGAATGCATGCAGACACTGGGCGAGTACCTATGGAGTTTCTCATCTCTCCCTGACACCAGAGACACATTCACAGGCTGACCAAGTTCCCTGCCCTTGTGCTGCACTCTCCTTGAGGAGACAGATGATGGTGACATGTAAGGAGCTCAGATGTC------CTGAGCTGTGAAGGAGGCAAGCAggggctgagggatggaggtggcagggtgggggcaggtgggggtggccgggATGTCTGGAGCCCAGGGCCAAGGCAGGTTCCTGCACTGCTCTGCTTAGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAAGGTGGCACAGTGTAGCCCCTTCCCCACTGCTGAAGATGCCGCCTTCGTAGGGTGGGCGCACAGGCTTTGGGGAGTTGAGAGCCACCCTGATCCTAGAGGTGGTTATTTCAGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGCAGCCTCGCATCCTCCCCATAACCTTCGCATTGGGTAGTGAAGGCCTCTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCAGTTGGGGTGTCAGCTTtcatctcacttagtcctcacaggggacctgcgaggtaagggccactattggcccaatttacagatgaggacgctgaggttcagagaagttacatgatttacccaaagtgacacagctactaagtggctgaatgggattgaacccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCATGGATGAGCAGGTAAAGTGCTCGTAAAGTGAAACCAACACTTTAGAAAGCTTACCTGGGAGTGAGGGGGCAGGCAACTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctcggcctatgtggggagtcagtttcaccacttcccacaaataccaaaatccacggatgctccagtcctgatataaaatggtacagtatttgcatataacctaagtacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagacagtgacatttcagtccctgccagaatgcatatagaatggtggtcccataaggttatatgccctatAACCTTGGAGCTGCCATATACAGGTGTACCATCTCTAAAATATGATATCTAAAAagagatggggtttttttatgctgcccagactagtgtagaacttctgggctcaggtgatcctcccagcacggtctcccaaagtgctgggattat-aggcatgaaccaccacacctggccAGATGTACCA--------TTAAAAAAatcatttatactgtatttttatgatccttttctgtgtttagatacacaaatagccaccattgtgttaccattgcctgtggtactctgtacggtaacatgctgcagaggtttggagcccaggagcaatgagctgtaccattcagccaaggtgtgtgtttggttgtagcctctggaggaagctaaggaggaatgacctaaaggcagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATATTAATATAATGACGGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttt---aagagatgaagtctcactctgtcacccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatcttttgggctcaagcgatcctcctgtctcagcctcctgacttggtgggactataggcacacgctaccttgcctggctac-------------ttttttttttaaacttttatccagagataggatctacctatgttgcccaggctggtctcaaactcctggactcaaatgaacctgaacctcctgcctcggcctctcatattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggtgcagctggatggaagttgtcggagtacactgtagtgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttatttTCAAAGATGAAGGTGGTTATCCTTCCATGAGTGTAAAGTTCAAAAGGTAGGCTCATGGTGTCGTCAGAAGTCAGAAGGCTGGGTGCAGGGCTGGGGGCTCTGGGACAGGCTGGGCTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTCAGAGCTGTGCACTTTCTTCATAAATGTTCAAAAGTTTAACCAAAAAGGAAAACGAGGATGGGAAGCTTGTTTGGGATGTGGG i macFas5.chr16 C 0 I 24 s macNem1.NW_012014910v1 2060386 2493 + 10377808 GCTCACATGTCTATGGGTCCAGCTCAGTGCCTGGCCTACCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTTCTGCTTTGGAATGCATGCAGACACTGGGCGAGTACCTATGGAGTTTCTAATCTCTCCCTGACACCAGAGACACATTCACAGGCTGACCAAGTTCCCTGCCCTTGTGCTGCACTCTCCTTGAGGAGACAGACGATGGTGACATGTAAGGAGCTCAGATGTC------CTGAGCTGTGAAGGAGGCAAGCAGGGGCTGAGGGATGGAGGTGGCAGGGTGGGGGCAGGTGGGGGTGGCCGGGATGTCTGGAGCCCAGGGCCAAGGCAGGTTCCCGCACTGCTCTGCTTAGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAAGGTGGCACAGTGTAGCCCCTTCCCCACTGCTGAAGATGCCGCCTTCGTAGGGTGGGCGCACAGGCTTTGGGGAGTTGAGAGCCACCCTGATCCTAGAGGTGGTTATTTCAGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGCAGCCTCGCATCCTCCCCATAACCTTCGCATTGGGTAGTGAAGGCCTCTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCAGTTGGGGTGTCAGCTTtcatctcacttagtcctcacaggggacctgcgaggtaagggccactattggcccaatttacagatgaggacgctgaggttcagagaagttacatgatttatccaaagtgacacagctactaagtggctgaatgggattgaacccaggtctttctgagatagcccaagctgttGATGGAGCCCTCTGGCTCATGGATGAGCAGGTAAAGTGCTCGTAAAGTGAAACCAACACTTTAGAAAGCTTACCTGGGAGTGAGGGGGCAGGCAACTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctcggcctatgtggggagtcagtttcaccacttcccacaaataccaaaatccacggatgctccagtcctgatataaaatggtacagtatttgcatataacctaagtacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagacagtgacatttcagtccctgccagaatgcatatagaatggtggtcccataaggttatatgccctatAACCTTGGAGCTGCCATATACAGGTGTACCATCTCTAAAATATGATATCTAAAAagagatggggtctttttatgctgcccagactagtgtagaacttctgggctcaggtgatcctcccagcacggtctcccaaagtgctgggattataaggcatgaaccaccacacctggccagatgtacca--------ttaaaaaaatcatttatactgtgtttttatgatccttttctgtgtttagatacacaaatagccaccattgtgttaccattgcctgtggtactctgtacggtaacatgctgcagaggtttggagcccaggagcaatgagctgtaccattcagccaaggtgtgtgtttggttgtagcctctggaggaagctaaggaggaatgacctaaaggcagaaggtgagtccgaggtgggatcctgggacaggtactagaatttaagcaaaaacaggtgaaatctgaatgaATTTCACCATATTAATATAATGACGGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttt---aagagatgaactctcactctgtcacccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatcttttgggctcaagggatcctcctgcctcagcctcctgacttggtgggactataggcacacgctaccttgcctggctac------------tttttttttttaaacttttatccagagataggatctacctatgttgcccaggctggtctcaaactcctggactcaaatgaacctgaacctcctgcctcggcctctcaaattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggtgcagctggatggaagttgtcggagtacactgtagtgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaGATGAAGGTGGTTATCCTTCCATGAGTGTAAAGTTCAAAAGGTAGGCTCATGGTGTCGTCAGAAGTCAGAAGGCTGGGTGCAGGGCTGGGGGCTCTGGGACAGGCTGGGCTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTCAGAGCTGTGCACTTTCTTCATAAATGTTCAAAAGTTTAACCAAAAAGGAAAACGAGGATGGGAAGCTTGTTTGGGATGTGGG i macNem1.NW_012014910v1 C 0 I 113 s cerAty1.NW_012006043v1 1945293 2488 - 8458610 GCTTACATGTCCATGCGTCCAGCTCAGTGCCTGGCCTACCGAGAATACTTGGGAAATGCCAGCTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTTCTGCTTTGGAATGCACGCAGACACTGGGTGAGTACCCACAGAGTTTCTAATCTCTCCCTGACACCGGAGACACATTCATAGACTGACCGAGTTCCTTGCTCTTGTGCTGCACTCTCCTTGAGGAGACAGACAGTGGCGACATGTAAGGAGCTAAGATGTC------CTGAGCTGTGAAGGAGGCAAGCAGGGGCTGACGGATGGAGGTGGCAGGGTGGGGGCAGGTGGGGGCGGCCGGGATGTCTGGAGCCCAGGGCCAAGGCAGGTTCCTGCACTGCTTTGCTTAGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAAGGTGGCACAGTGCAGCCCCTTCCCCACTGTTGAAGATGCCGCCTTCGTAGGGTGGGTGCACAGGCTTTGGGGAGTTGAGAGCCACCCTGATCCTAGAGGTGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGGGCCTCGCATCCTCCCCATAACCTTCGCATTGGGTAGTGAAGGCCTCTACCTTC----ACTGAGGTAGGGAGAAGTGGTGTCACTTGGGGTGTCAGCTTtcatctcacttagtcctcacaggggccctgcgaggtaagggccaccatcagcccaatttacagatgaggacgctgaggttcagagaagttacatgatttacccaaagtgacacagctactaagtggctgaatgggatggaacccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCATGGATGAGCAGGTAAAGTGCTCGTAAAGTGAAACCAACACTTTAGAAAGCTTACCTGGGAGTGAGGGGGCAGGCAACTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctcggcctatgtggggagtcagtttcaccacttcccacaaataccaaaatccacggatgctccagtcctgatataaaatggtacagtatttgcatataacctaagtacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagacagtgacatttcagtccctgccagaatgcacatagaatggtggtcccataaggttatatgccctatAACCTTGGAGCTGCCATATACAGGTGTACCATCTCTAAAATATGATATCTAAAAagagatggggtctttttatgctgcccagactagtgtagaacttctgggctcaggtgatcctcccagcacggtctcccaaagtgctgggattgt-aggcatgaaccaccacacctggccagatgtacca--------ttaaaaaaatcatttatactgtatttttatgatccttttctgtgtttagatacacaaatagccaccattgtgttaccattgcctgtggtactctgtacggtaacatgctgcagaggtttggagcccaggagcaatgagctgtaccattcagccaaggtgtgtgtttggttgtagcctctggaggaagctaaggaagaatgacctaaaggcagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATATTAATATAATGACGGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcacccatgttaaattccttaatttttttt---aagagatgaagtctcgctctgtcacccaggctggaatgcagtggtgcgatcacagctcactgcttcctggatcttttgggctcaagcgatcctcctgcctcagcctcctgacttggtgggactataggcacacgctaccttgcctggctac------------ttttttttttaaaacttttatccagagataggagctacctatgttgcccaggctggtctcaaactcctggactcaaatgaacctgaacctcctgcctcggcctctcaaattgctgggattacaggtgtgagccaccacacctggcctaaatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggtgcagctggatggaagttgtcggagtacactatagtgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaGATGAAGGTGGTTATCCTTCCATGAATGTAAAGTTCAAAAGGTAGGCTCATGGTGTCGTCAGAAGTCAGAAGGCTGGGTGCAGGGCTGGGGGCGCTGGGACAGGCTGGGCTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTCAGAGCTGTGCACTTTCTTCATAAATGTTCAAAAGTTTAACCAAAAAGGAAAACGAGGATGGGAAGCTTGTTTGGGATGTGGG i cerAty1.NW_012006043v1 I 12 I 113 s manLeu1.NW_012106252v1 2130344 2491 + 4244037 GCTTACATGTCCATGGGTCCAGCTCAGTGCCTGGCCTACCGAGAATACTTGGGAAATGCCAGCTAAGGACTGTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTTCTGCTTTGGAACACATGcagacactgggtgagtacctacagagtttctaatctctccctgacaccagagacacattcatagactgaccgagttccttgcccttgtgctgcactctccttgaggagacagacaATGGCGACATGTAAGGAGCTAAGATGTC------CTGAGCTGTGAAGGAGGCAAGCAGGGGCTGACGGATGGAGGTGGCAGGGTGGGGGCAGGTGGGGGTGGCCGGGATGTCTGGAGCCCAGGGCCAAGGCAGGTTCCTGCACTGCTTTGCTTAGGGACCTAGCTGGGCTCTGAGTCATGAGGACAGACAGTGGCCAGGGTGAAGGTGGCACAGTGCAGCCCCTTCCCCACTGCTGAAGATGCCGCCTTCGTAGGGTGGGCGCACAGGCTTTGGGGAGTTGAGAGCCACCCTGATCCTAGAGGTGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGGGCCTCGCATCCTCCCCATAACCTTCGCATTGGGTAGTGAAGGCCTCTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCAGTTGGGGAGTCAGCTTtcatctcacttagtcctcacaggggccctgcgaggtaaggggcaccatcggcccaatttacagatgaggacgctgaggttcagagaagttacatgatttacccaaagtgacacagctactaagtggctgaatgggatggaacccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCATGGATGAGCAGGTAAAGTGCTCGTAAAGTGAAACCAACACTTTAGAAAGCTTACCTGGGAGTGAGGGGGCAGGCAACTGAGCCTTCTGTGGGGTCTGAAATGTTTAcagttgtccctcggcctatgtggggagtcagtttcaccacttcccacaaataccaaaatccacggatgctccagtcctgatataaaatggtacagtatttgcatataacctaagtacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagacagtgacatttcagtccctgccagaatgcatatagaatggtggtcccataaggttatatgccctatAACCTTGGAGCTGCCATATACAGGTGTACCATCTCTAAAATATGATATCTAAAAagagatggggtctttttatgctgcccagactagtgtagaacttctgggctcaggtgatcctcccagcacggtctcccaaagtgctgggattgt-aggcatgaaccaccacacctggccagatgtacca--------ttaaaaaaatcatttatactgtatttttatgatccttttctgtgtttagatacacaaatagccaccattgtgttaccattgcctgtggtactctgtacggtaacatgctgcagaggtttgaagcccaggagcaatgagctgtaccattcagccaaggtgtgtgtttggttgtagcctctggaggaagctaaggaggaatgacctaaaggcagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaaTTTCACCATATTAATATAATGACGGCATTAATAACCTTAAATAATAGTTAACATTATTAttcagttaacaggattgcactcatgttaaattccttaatttttttt---aagagatgaagtctcactctgtcacccaggctggaatgcagtggtgcgatcatagctcactgcttcctggatcttttgggctcaagtgatcctcctgcctcagcctcctgacttggtgggactataggcacacgctaccttgcctggctac------------ttttttttttaaaacttttctccagagataggatctacctatgttgcccaggctggtctcaaactcctggactcagatgaacctgaacctcctgcctcggcctctcaaattgctgggattacaggtgtgagccaccacacctggcct-aatttcttaatttggacaaatgtgccatggtaatgcaaaatgtcattattaggtgcagctggatggaagttgtcagagtacactatagtgccttttcagtttttctgtatatctaaaatcatttcaaaagtaaacgtttattttaaaaGATGAAGGTGGTTATCCTTCCATGAGTGTAAAGTTCAAAAGGTAGGCTCATGGTGTCGTCAGAAGTCAGAAGGCTGGGTGCAGGGCTGGGGGCGCTGGGACAGGCTGGGCTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTCAGAGCTGTGCACTTTCTTCATAAATGTTCAAAAGTTTAACCAAAAAGGAAAACGAGGATGGGAAGCTTGTTTGGGATGTGGG i manLeu1.NW_012106252v1 C 0 I 113 s colAng1.NW_012122154v1 2152720 2498 + 4569836 GCTCAGACGTCCATGGGTCCAGCTCAGTGCCTGGCCTACCGAGAATACTTGGGAAATGCCAACTAAGGACTCTCACCTCAGGAGGGTCTCTTCTCATTTCCAAAGCTGTCTTCTGCTTTGGAATGCATGCAGACACTGGGCAAGTACCTACGGAGTTTCTAATCTCTCCCTGACACCAAAGACACATTCATAGAGTGACCGAGTTCCCTGCCCTTGTGCTGCACTCTCCTTGAGGAGACAGACAATGGCGACATGTAAGGAGCTAAGATGTC------CTGAGCTGTGAAGGAGGCAAGCAGGGGCTGAGGGATGGAGGTGGCAGGGTGGGGGCAGGTGGGGGTGGCCGGGATGTCTGGAGCCCAGGGCCAAGGCAGGTTCCTGCACTGCTCTGCTTAGGGACCTAGCTGGGCTCTGAGTCATGAGGGCAGACAGTGGCCAGGGTGAAGGTGGCACAGTGCAGCCCCTTCCCCACTGCTGAAGATGCCGCCTTCGTAGGGTGGGCGCACAGGCTTTGGGGAGTTGAGAGCCACCCTGATCCTAGAGGTGGTTATTTCTGGAAGCAAAAATCCAGGGTTTATGCTCCTGGGACAGGGGATCCCTGGGGCCTCGCATCCTCCCCATAACCTTCGCACTGGGTAGTGAAGGCCTCTTCCTGTTGAGTCTGAGGAAGGGAGAAGTGGTGTCAGTTGGGGTGTCAGCTTtcatctcacttagtcctcacaggggccctgcgaggtaagggccaccatcggcccaatttacagatgaggactctgaagttcagagacgttacatgatttacccaaagtgacacagctactaagtggctgaatgggattgaacccaggtctttctgagacagcccaagctgttGATGGAGCCCTCTGGCTCATGGATGAGCAGGTAAAGTGCTCATAAAGTGAAACCAACACTTTAGAAAGCTTACCTGGGGGTGAGGGGGCAGGTAACTGAGTCTTCTGTGGGGCCTGAAATGTTTAcagttgtccctcggcctatgtggggaatcagtttcaccacttcccacaaataccaaaatccacggatgctccagtcctgatataaaatggtacagtatttgcatataacctaagtacatcttcccatatgctttaaatcatctctagattacttaCCTATGcaatcatgtgtcagatagtgacatttcagtccctgccagaatacatatagaatggtggtcccataaggttatatgccctatAACCCTGGAGCTGCCATCTACAGGTGTACCATCTCTAAAATATGATATCTAAAAagagatggggtctttttatgctgcccagattagtctagaacttctgagctcaggtgatcctcccagcacggtctcccaaagtgctgggattatagggcatgaaccaccatacctggccagatgtacca-------tttaaaaaaatcatttatactgtatttttatgatccttttctgtgttcagatacacaaatagccaccattgtgttaccattgcctatggtactctgtacggtaacatgctgcagaggtttggagcccaggagcaatgagctgtaccattcagccaaggtgtgtGTTTGGTTGTCGCCTCTggaggaagctaaggaggaatgacctaaaggcagaaggtgagtccgaggtgggatcctgggacaggtactagaagttaagcaaaaacaggtgaaatctgaatgaatttcaccatattaatataatgacggcattaataaccttaaataatagttaacattattattccattaacaggattgcacccatgttaaattccttaatttttttt---aagagataaagtctcactctgtcacccacgctggaatgcagtggtgcgatcatagctcactgcttcctggatcttttgggttcaagcgatcctcctgcctcagcctcctgacttgatgggactataggcacacgctaccatgcctggctactt--------tttttttttttttaaacttttctccagagataggatctacctatgttgcccaggctggtctcaaactcctggactcaaatgaacctgaacctcctacctcggcctctcaaattgttgggattgcaggtgtgagccaccacacctggcctaaatttcttagtttggacaaatgtgccatggtaatgcaaaatgtcattattaggtgcagctggatggaagctgtcggagtacactatagtgacttttcagtttttctgtatatctaaaatcatttcaaaagtaaacatttattttaaaaGATGAAGGTGGTTATCCTTCCATGAGTGTAAAGTACAAAAGGTAGGCTCATGGTGTCGTCAGAAGTCAGAAGGCTGGGTGCAGGGCTGGGGGTGCTGGGACAGGCTGGGCTGGCTTTGTGATCTGGGGGCTGATGTGTTCCATCTGTTAATGTCTTCAGAGCGGTGCACTTTCTTCATAAATGTTCAAAAGTTTAACCAAAAAGTAAAACGAGGATGGGAAGCTTATTTGGGATGTGGG i colAng1.NW_012122154v1 C 0 I 113 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C a score=5698.000000 s hg38.chr17_GL383564v2_alt 110582 5 + 133151 GCCTC s panTro5.chr17 16299695 5 + 83181570 GCCTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16204558 5 + 83442489 GCCTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4039618 5 + 4267968 GCCTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022276 5 - 2193130 GCCTT i nomLeu3.chrUn_GL397460_1 C 0 I 101 s macFas5.chr16 28005200 5 - 80997621 GCCCT i macFas5.chr16 I 24 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e macNem1.NW_012014910v1 2062879 113 + 10377808 I e colAng1.NW_012122154v1 2155218 113 + 4569836 I e manLeu1.NW_012106252v1 2132835 113 + 4244037 I e chlSab2.chr16 64899697 0 + 75148670 C e cerAty1.NW_012006043v1 1947781 113 - 8458610 I e rheMac8.chr16 30092916 113 - 77216781 I a score=3250.000000 s hg38.chr17_GL383564v2_alt 110587 8 + 133151 ---------------GGGAGTGT------- s panTro5.chr17 16299700 8 + 83181570 ---------------GGGAGTGT------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16204563 8 + 83442489 ---------------GGGAGTGT------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4039623 8 + 4267968 ---------------GGGAGTGT------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022382 8 - 2193130 ---------------gggagtgt------- i nomLeu3.chrUn_GL397460_1 I 101 C 0 s macFas5.chr16 28005205 30 - 80997621 GGCCCAGATGCTTCTAGAAGCCTGGAGGGA i macFas5.chr16 C 0 I 54 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e macNem1.NW_012014910v1 2062879 113 + 10377808 I e colAng1.NW_012122154v1 2155218 113 + 4569836 I e manLeu1.NW_012106252v1 2132835 113 + 4244037 I e chlSab2.chr16 64899697 0 + 75148670 C e cerAty1.NW_012006043v1 1947781 113 - 8458610 I e rheMac8.chr16 30092916 113 - 77216781 I a score=826969.000000 s hg38.chr17_GL383564v2_alt 110595 172 + 133151 ACTGCTGCTTGTCCCTAGCTGTGAATGGGGTGCCCTGGTCGGAAGCAGTGCTGTGTGCACTgcagggccggcaagtgcatgtccacgttgtggctcagtgcagtgaaagccaatctcagccccttccgcagtgtggtcagcctgccagtaggtggccagctggtccttctgg s panTro5.chr17 16299708 172 + 83181570 ACTGCTGCTTGTCCCTAGCTGTGAATGGGGTGCCCTGGTCGGAAGCAGTGCTGTGTGCACTgcagggccggcaagtgcatgtccacattgtggctcagtgcagtgaaagccaatctcagccccttccgcagtgtggtcagcctgccagtaggtggccagctggtccttctgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16204571 172 + 83442489 ACTGCTGCTTGTCCCTAGCTGTGAATGGGGTGCCCTGGTCGGAAGCAGTGCTGTGTGCACTgcagggccggcaagtgcatgtccacattgtggctcagtgcagtgaaagccaatctcagccccttccgcagtgtggtcagcctgccagtaggtggccagctggtccttctgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4039631 172 + 4267968 ACTGCTGCTTGTCCCTAGCTGTGAATGGGGTACCCTGGTCGGAAGCAGTGCTGTGTGCACTgcagggccggcaagtgcatgtccacgttgtggctccgtgcagtgaaagccaatctcagccccttccgcagtgtggtcagcctgccagtaggtggccagctggtccttctgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022390 172 - 2193130 acTGCTGCTTGTCCCTAGCTGTGAATGGGGTGCCCTGGTCAGAAGCAGTGCTGTGTGCACTgcagggctggcaagtgcatgtccacgttgtggctcagggcagtgaaagccagtctcagccccttccgcagtgtggtcagcctgccagtaggtggccagctggtcctcccgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30093029 172 - 77216781 ACTGCTGCTTGTCCTTAGCTGTGAATGGGATACCCTGGTCGGAAGCAGTGCTGTGTGCACTGCAGGGCCCACAAGTCCATGTCCACATGGCGGCTCAGTGCAGTGAAAGCCAATCTCAGCCCCTTCTGCAGTGTGGTCAGCCTGCCAGTAGGTGGCCACCTGGTCCTCCTGG i rheMac8.chr16 I 113 I 17 s macFas5.chr16 28005289 169 - 80997621 ACTGCTGCTTGTCCTTAGCTGTGAATGGGATACCCTGGTCGGAAGCAGTGCTGTGTGCACTGCAGGGCCCACAAGTCCATGTCCACATGGCGGCTCAGTGCAGTGAAAGCCAATCTCAGCCCCTTCTGCAGTGTGGTCAGCCTGCCAGTAGGTGGCCACCTGGTCCTCC--- i macFas5.chr16 I 54 C 0 s macNem1.NW_012014910v1 2062992 172 + 10377808 ACTGCTGCTTGTCCTTAGCTGTGAATGGGATACCCTGGTCGGAAGCAGTGCTGTGTGCACTGCAGGGCCCACAAGTCCATGTCCACATGGCGGCTCAGTGCAGTGAAAGCCAATCTCAGCCCCTTCTGCAGTGTGGTCAGCCTGCCAGTAGGTGGCCACCTGGTCCTCCTGG i macNem1.NW_012014910v1 I 113 I 17 s cerAty1.NW_012006043v1 1947894 172 - 8458610 actgctgcttgtCCTTAGCTGTGAATGGGATACCCCGGTCGGAAGCAGTGCTGTGTGCACTGCAGGGCCCACAAGTCCATGTCCACATGGCGGCTCAGTGCAGTGAAAGCCAATATCAGCCCCTTCTGcagtgtggtcagcctgccagtaggtggccagctggtcctcctgg i cerAty1.NW_012006043v1 I 113 C 0 s manLeu1.NW_012106252v1 2132948 172 + 4244037 actgctgcttgtCCTTAGCTGTGAATGGGATACCCTGGTCGGAAGCAGTGCTGTGTGCACTGCAGGGCCCACAAGTCCATGTCCACATGGCGGCTCAGTGcagtgaaagccaatctcagccccttctgcagtgtggtcagcctgccagtaggtggccagctggtcctcctgg i manLeu1.NW_012106252v1 I 113 C 0 s colAng1.NW_012122154v1 2155331 171 + 4569836 actgctgcttgtCCTTAGCTGCAAATGGGGTGCCCTGGTCGGAAGCAGTGCTGTGTGCACTGC-GGGCCCAcaagtccatgtccacatggtggctcagtgcagtgaaagccaatcccagccccttctgtagtgtggtcagcctgccagtaggtggccagctggtcctcctgg i colAng1.NW_012122154v1 I 113 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C a score=47788.000000 s hg38.chr17_GL383564v2_alt 110767 15 + 133151 gaaatggtgccatcc s panTro5.chr17 16299880 15 + 83181570 gaaatggtgccatcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16204743 15 + 83442489 gaaatggtgccatcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4039803 15 + 4267968 gaaatggtgccatcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022562 15 - 2193130 gaaatggtgccatcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28005458 11 - 80997621 ----TGGTGCCATCC i macFas5.chr16 C 0 I 9 s cerAty1.NW_012006043v1 1948066 15 - 8458610 gaaatggtgccatCC i cerAty1.NW_012006043v1 C 0 I 9 s manLeu1.NW_012106252v1 2133120 15 + 4244037 gaaatggtgccatCC i manLeu1.NW_012106252v1 C 0 I 9 s colAng1.NW_012122154v1 2155502 15 + 4569836 gaaatggtgccatcc i colAng1.NW_012122154v1 C 0 I 22 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e macNem1.NW_012014910v1 2063164 17 + 10377808 I e chlSab2.chr16 64899697 0 + 75148670 C e rheMac8.chr16 30093201 17 - 77216781 I a score=7306.000000 s hg38.chr17_GL383564v2_alt 110782 9 + 133151 caggggttg s panTro5.chr17 16299895 9 + 83181570 caggggttg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16204758 9 + 83442489 caggggttg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4039818 9 + 4267968 caggagttg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022577 9 - 2193130 cagcggttg i nomLeu3.chrUn_GL397460_1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e macNem1.NW_012014910v1 2063164 17 + 10377808 I e colAng1.NW_012122154v1 2155517 22 + 4569836 I e manLeu1.NW_012106252v1 2133135 9 + 4244037 I e chlSab2.chr16 64899697 0 + 75148670 C e cerAty1.NW_012006043v1 1948081 9 - 8458610 I e rheMac8.chr16 30093201 17 - 77216781 I e macFas5.chr16 28005469 9 - 80997621 I a score=507804.000000 s hg38.chr17_GL383564v2_alt 110791 384 + 133151 ggtgtgaatctgttttccacagacaaggcgctcagcagtggtgtcagcctggtgagccttggtaagggcatgtgcaggatgctgagcctctcccgtccccatgcccgtctcatggccacttgctctgcgggcccatccagcaagcatggtggctgggaaagaagccggctccatccacagggcatgctgttttgcccacctcaggaccaagagtattctctgtagtaattctctttggtgggagcactgggaacatgaacaacagataccttcagagtctgagcTGCTGAGGTGAGGGCTGCAGGGTGCCCTGCTGTCAGGAGAGCCTGCACTGGCAGCTGGAAGG------CACGTGGTGGTGGCACCTGCTGTGGCTGCAGCAGTGGC s panTro5.chr17 16299904 384 + 83181570 ggtgtgagtctgttttccacagacaaggtgctcagcagtggtgtcagcctggtgagccttggtaagggcatgtgcaggatgctgagcctctcccgtccccatgcccgtctcatggccacttgctctgcgggcccatccagcaagcatggtggctgggaaagaagccggctccatccacagggcatgctactttgcccacctcaggaccaagagtattctctgtagtaattctctttggtgggagcactgggaacatgaacaacagataccttcagagtctgagcTGCTGAGGTGAGGGCTGCAGGGTGCCCTGCTGTCAGGAGAGCCTGCACTGGCAGCTGGAAGG------CACGTGGTGGTGGCGCCTGCTGTGGCTGCAGCAGTGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16204767 383 + 83442489 ggtgtgagtctgttttcc-cagacaaggtgctcagcagtggtgtcagcctggtgagccttggtaagggcatgtacaggatgctgagcctctcccgtccccatgcccgtctcatggccacttgctctgcgggcccatccagcaagcatggtggctgggaaagaagccggctccatccacagggcatgctactttgcccacctcaggaccaagagtattctctgtagtaattctctttggtgggagcactgggaacatgaacaacagataccttcagagtctgagcTGCTGAGGTGAGGGCTGCAGGGTGCCCTGCTGTCAGGAGAGCCTGCACTGGCAGCTGGAAGG------CACGTGGTGGTGGCGCCTGCTGTGGCTGCAGCAGTGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4039827 384 + 4267968 ggtgtgagtctcttttccacagacgaggcgctcagcagtggtgtcagcctggtgagccttggtaagggcatgtgcaggatgctgagcctctcccgtccccatgcccgtctcatggccacttgctctgcgggcccatccagcaagcatggtggctgggaaagaagccggctccatccacagggcatgctgttttgcccatctcaggaccaagagtattctctgtagtaattctctttggtgggagcactgggaacatgaacaacagataccttcagagtctgagcTGCTGAGGTGAGGGCTGCAGGGTGCCCTGCTGTCAGGAGAGCCTGCACTGGCAGCTGGAAGG------CACGTGGTGGTGGCACCTGCTGTGGCTGCAGCAGTGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022586 390 - 2193130 ggtgtgagtctgttgtccacagacagggcgctcagcagtggtgtcagcctggtgagccttggcaagggcatgtgcaggatgctgagcctctcccgtccccatgcccgtctcatggccactggctccgcgggcccacccagcaagcacggtggctgggaaagaagctggctgcatccacagggcatgctgttttgcccacctaaggaccaagggtattctctgtagtaattctctttggtgggagcactgggaacatgaacaacagataccttcagagtctgagcTGCTGAGGCGAGGGCTGCAGGGTGCCCTGCTGTCAGGAGAGCCTGCACTGGCAGCTGGAAGGCAGTACCACGTGGTGGTGGTGCCTGCTGCACCTGCAGCAGTGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s colAng1.NW_012122154v1 2155539 384 + 4569836 ggtgtgaatctcttgtccacagaccgggcgctcagcagtggtgtcagcctggtgagccttggcaagagcatgtgcaggatgctgagcctctcctgtccccatacctgtctcatggccatttgctccatgggcccacccagcaagcgtggtggctgggaaagaagccggctccatccacggggcatgccgttctgcacacctcaggaccaagagcatcctccgtagtaattctctttggtgggagtacctggaacgtgaacaacagataccttcagagtctgagcttctgaggcgaggGCTGCAGGGTGCCCTGCTGTCAGGAGAGCCTGCACGGGCAGCTGGAAGG------CACGTGGAGGTGGTGCCTGCTGCAGCTGCAGCAGTGGC i colAng1.NW_012122154v1 I 22 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e macNem1.NW_012014910v1 2063164 17 + 10377808 I e manLeu1.NW_012106252v1 2133135 9 + 4244037 I e chlSab2.chr16 64899697 0 + 75148670 C e cerAty1.NW_012006043v1 1948081 9 - 8458610 I e rheMac8.chr16 30093201 17 - 77216781 I e macFas5.chr16 28005469 9 - 80997621 I a score=5015094.000000 s hg38.chr17_GL383564v2_alt 111175 1044 + 133151 TGCAAGGCTTCGAGATCTCTCCCCGGTTCTGTAAGGTGAATTGTGACAATGCAGAGCTCTGCAGTGCCAGGGTCCCCTGCATGGTCATGCTGACTGCAGCTGGGAGCCCACCACAGCCCTGGTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGGCCACTCTTGGCCTGGGTATTGTGCCCCAGGTCCATACTGCTGGCTGTCTGGGGCTGCAGGGATGCCGTGCTCACGTC--TCTCTCTTGTGGCCTTGATGGGACCAGCTTCCCCATTGAATGGGATCTTCCAAGGTATCTGGGGCTGCGGGGAAGCTGGTGGGTGCCACCCTGGTTCCTTCCAGATACAGGTGCCCATGTTGCAGT--GGGGGTATCTCCTGATCTCCTTCTTAGTCCTGATGGGCCTGGGCAGGGCCTGGTGTCGAGGTCCCCATGGGCTTCCTGGGCTAGGTCTGTCCCATGGTCCCAGGGCTGTCCAGGACACATTTGGAGGGGACACGGGCCCAACAGCCCTGTTCGAAATCATAATGGGGAAACCAAGGGCTCACCACGTCCGAGTCCATTGGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGTCTGGGCACACCCTGGGATAGCCCCACCAAGACAGGACAGGGTGTGAAAGGAAGAGGCACCCATGGCGGGGAAGCTGACCAAATGCACTGCTGGAAGTGGGCTTGTGGGCCTGGAGGAGCCTGCCTACTCCCCTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCCAGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGATATGGTCAGCATCTCCAGTGAGCCCATGCAGATCTTTCCGGGTCAGGCCCCACCTGCCTGGGTCTCTAGAGTCCTCAGGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGAAAGCTGTATGGGCATGGGAGGTGGCT s panTro5.chr17 16300288 1044 + 83181570 TGCAAGGCTTCGAGATCTCTCTCCGGTTCTGTAAGGTGAATTGTGACAATGCAGAGCTCTGCAGTGCCAGGGTCCCCTGCATGGTCATGCTGACTGCAGCTGGGAGCCCACCACAGCCCTGGTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGGCCACTCTTGGCCTGGGTATTGTGCCCCAGGTCCATACTGCTGGCTGTCCGGGGCTGCAGGGATGCCGTGCTCACGTC--TCTCTCTTGTGGCCTTGATGGGACCAGCTTCCCCATTGAATGGGATCTTCCAAGGTATCTGGGGCTGCGGGGAAGCTGGTGGGTGCCACCCTGGTTCCTTCCAGATACAGGTGCCCATGGTGCAGT--GGGGGTATCTCCTGATCTCCTTCTTAGTCCTGATGGGCCTGGGCAGGGCCTGGTGTTGAGGTCCCCATGGGCTTCCTGGGCTAGGTCTGTCCCATGGTCCCAGGGCTGTCCAGGACACATTTGGAGGGGACACGGGCCCAACAGCCCTGTTCAAAATCATAATGGGGAAACCAAGGGCTCACCACATCCGAGTCCATTGGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAAGACAGGACAGGGTGTGAAAGGAAGAGGCACCCATGGCAGGGAAGCTGACCAAATGCACTGCTGGAAGTGGGCTTGCGGGCCTGGAGGAGCCTGCCTACTCCCCTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCCAGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGATATGGTCAGCATCTCCAGTGAGCCCATGCAGATCTTTCCGGGTCAGGCCCCACCTGCCTGGGTCTCTAGAGTCCTCGGGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAAGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTATGGGCACGGCAGGTGGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16205150 1044 + 83442489 TGCAAGGCTTCGAGATCTCTCTCCGGTTCTGTAAGGTGAATTGTGACAATGCAGAGCTCTGCAGTGCCAGGGTCCCCTGCATGGTCATGCTGACTGCAGCTGGGAGCCCACCACAGCCCTGGTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGGCCACTCTTGGCCTGGGTATTGTGCCCCAGGTCCATACTGCTGGCTGTCCGGGGCTGCAGGGATGCCGTGCTCACGTC--TCTCTCTTGTGGCCTTGATGGGACCAGCTTCCCCATTGAATGGGATCTTCCAAGGTATCTGGGGCTGCGGGGAAGCTGGTGGGTGCCACCCTGGTTCCTTCCAGATACAGGTGCCCATGGTGCAGT--GGGGGTATCTCCTGATCTCCTTCTTAGTCCTGATGGGCCTGGGCAGGGCCTGGTGTCGAGGTCCCCATGGGCTTCCTGGGCTAGGTCTGTCCCATGGTCCCAGGGCTGTCCAGGACACATTTGGAGGGGACACGGGCCCAACAGCCCTGTTCAAAATCATAATGGGGAAACCAAGGGCTCACCACATCCGAGTCCATTGGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAAGACAGGACAGGGTGTGAAAGGAAGAGGCACCCATGGCAGGGAAGCTGACCAAATGCACTGCTGGAAGTGGGCTTGCGGGCCTGGAGGAGCCTGCCTACTCCCCTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCCGGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGATATGGTCAGCATCTCCAGTGAGCCCATGCAGATCTTTCCGGGGCAGGCCCCACCTGCCTGGGTCTCTAGAGTCCTCGGGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTATGGGCACGGCAGGTGGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4040211 1044 + 4267968 TGCAAGGCTTCGAGATCTCTCCCCGGTTCTGTAAGGTGAATTGTGACAATGCAGAGCTCTGCAGTGCCAGGGTCTCCTGCATGGTCATGCTGACTGCAGCTGGGAGCCCACCACAGCCCTGGTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGGCCACTCTTGGCCTGGGTATTGTGCCCCAGGTCCATACTGCTGGCTGTCCGGGGCTGCAGGGATGCCGTGCTCATGTC--TCTCTCTTGTGGCCTTGATGGGACCAGCTTCCCCATTGAATGGGATCTTCCAAGATATCTGGGGCTGCGGGGAAGCTGGTGGGTGCCACCCTGGTTCCTTCCAGATACAGGTTCCCATGTTGCAGT--GGGGGTATCTCCTGATCTCCTTCTTAGTCCTGATGGGCCTGGGCAGGGCCTGGTGTCGAGGTCCCCATGGGCTTCCTGGGCTAGGTCTGTCCCATGGTCCCAGGGCTATCCAGGACACATTTGGAGGGGACACGGGCCCAACAGCCCTGTTCGAAATCATAATGGGGAAACCAAGGGCTCACCACATCCGAGTCCATTGGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAAGACAGGACAGGGTGTGAAAGGAAGAGGCACCCATGGCGGGGAAGCTGACCAAATGCGCTGCTGGAAGTGGGCTTGTGGGCCTGGAGGAGCCTGCCTACTCCCCTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCCGGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGATATGGTCAGCATCTCCAGTGAGCCCATGCAGATCTTTCCGGGTCAGGCCCCACGTGCCTGGGTCTCTAGAGTCCTCAGGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTATGGGCACAGCAGGTGGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2022976 1045 - 2193130 TGCAAGGCATCGGGATCTCTCCCCGGTTCTGTGAGGTGAATTGCAACAGTGCAGAGCTCTGCAGTGCCAGGGTCCCCTGCATGGTCATGCTGACTGCAGCTGGGAGCCCACCACAGCCCTGGTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGGCCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCCATACTGCTGGCTGTCCGGGGCTGCGGGGATGCCGTGCTCACATC--TCTCTCTTGGGGCCTTGATGGGACCAGCTTCCCCACTGAATGGAATCTTCCAAGGTATCTGGGGCTGCGGGGAAGCTGGTGGGTGCCACCCTGGCTCCTTCCAGATACAGGTGCCCATGTTGCAGTGGGGGGGTATCTCCTGATCTCCCTCTTAGTCCTGATGGGCCTGGGCGGGGCCT-GTGTTGAGGTCCCCATGGGCTTCCTGGGCTAGGTCTGTCCCATGGTCCCAGGGCTGTCCAGGACACATTTGGAGGGGACACAGGCCCAACAGCCCTGTTGGAAATCATAATGGGGAATCCAAGGGCTCGCCACATCCGAGTCCATTGGGAGCCGAGGTAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCTGAGGTCCTCCCTGAGCTGGGGCTAGGCTGGGCACACCCCGGGATAGCCCCACCAGGACAGGACAGGGTGTAAAAGGAGGAGGCACCCATGGCGGGGAAGCTGACCAGATGTGCTGCTGGAAGTGGGCTTGTGGGCCTGGAGGGGCCTGCCCACTCCCCTTGCAGAGGGTCTTCCTGCCACACGGTGAAGACGGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGATGTGGTCAGCAACTCCAGTGAGCCCATGCAGATCTTTCGGGGTCAGGCCCCACCTACCTGGGTCTCTAGAGTCCTCGGGGTCTCTGTGTGGCCCCTGTGGCCTGACAGGACATGCTTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCTGCCTGGGGTGTGGAAGCTGTAGGGGCATGGCAGGTGGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30093218 1042 - 77216781 TGCAAGGCTTCGGGATCCCTTCCCGGTTCTGTGAGGTGAATTGTGACAGTGCAGAGCTCTGCAGTGCCAGGGTCGCCTGCATGGTCATGCTGACTGCAACTGGGAGCCCACCACAGCCCTGCTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGACCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCTATGCTGCTGGCTGTCCGGGGCTGCAGGGATGCCATGCTCACCTCTTTCTCTCTCGTGGCCTTGATGGGACCAGCTTTCCCATTGAATGGGATCTTCCAAGGTGTC--GGGCTGCGGGGAAGCTGGCAGGTGCCACCCTGGCTCCTTCCAGATACAGGTGTCCATGTTGCAGT--GGGGGTATCTCCTGACCTCCCTCTTAGTCCTGAAGGGCCTGGGCAGGGTCTGGTGTTGGGGTCCCCGTGGGCTTCCTGGGTTAGGCCTGTCCCATGGTCCT-GGGCTGTCCAGGACACATTCGGAGGGGACATGGGCCCAGCAGCCCTGTTGGAAATCATAATAGGGGAACCAAGGGCTCCCCACATCCGAGTCTGTCAGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAGGACAGGACAGGGTGTGAAAGGAGGAGGCACTCATGGCGGGGAAGCTGACCAGATGTGCTGCTGGAACCGCGCTAGTGGGCCTGGAGGGGCCTGCCCACCCCACTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCTGGCTCAGGCCTGGGTGCCGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGGCGTGGTCAGCATCTCCAGTGAGCCCATGCAGTTCTTTCT-GATCAGGCCCCACCTTTCTGGGTCTCTAGAGTCCTCGAGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTCGGGGCATGGCAGGTGGCT i rheMac8.chr16 I 17 C 0 s macFas5.chr16 28005478 1042 - 80997621 TGCAAGGCTTCGGGATCCCTTCCCGGTTCTGTGAGGTGAATTGTGACAGTGCAGAGCTCTGCAGTGCCAGGGTCGCCTGCATGGTCATGCTGACTGCAACTGGGAGCCCACCACAGCCCTGCTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCGGACCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCTATGCTGCTGGCTGTCCGGGGCTGCAGGGATGCCATGCTCACCTCTTTCTCTCTCGTGGCCTTGATGGGACCAGCTTTCCCATTGAATGGGATCTTCCAAGGTGTC--GGGCTGCGGGGAAGCTGGCAGGTGCCACCCTGGCTCCTTCCAGATACAGGTGTCCATGTTGCAGT--GGGGGTATCTCCTGACCTCCCTCTTAGTCCTGAAGGGCCTGGGCAGGGTCCGGTGTTGGGGTCCCCGTGGGCTTCCTGGGTTAGGCCTGTCCCATGGTCCT-GGGCTGTCCAGGACACATTCGGAGGGGACATGGGCCCAGCAGCCCTGTTGGAAATCATAATAGGGGAACCAAGGGCTCCCCACATCTGAGTCTGTCAGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAGGACAGGACAGGGTGTGAAAGGAGGAGGCACTCATGGCGGGGAAGCTGACCAGATGTGCTGCTGGAACCGCGCTAGTGGGCCTGGAGGGGCCTGCCCACCCCACTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCTGGCTCAGGCCTGGGTGCCGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGGCGTGGTCAGCATCTCCAGTGAGCCCATGCAGTTCTTTCT-GATCAGGCCCCACCTTTCTGGGTCTCTAGAGTCCTCGAGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTCGGGGCATGGCAGGTGGCT i macFas5.chr16 I 9 C 0 s macNem1.NW_012014910v1 2063181 1042 + 10377808 TGCAAGGCTTCGGGATCCCTTCCCGGTTCTGTGAGGTGAATTGTGACAGTGCAGAGCTCTGCAGTGCCAGGGTCGCCTGCATGGTCATGCTGACTGCAACTGGGAGCCCACCACAGCCCTGCTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGACCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCTATGCTGCTGGCTGTCCGGGGCTGCAGGGATGCCATGCTCACCTCTTTCTCTCTCGTGGCCTTGATGGGACCAGCTTTCCCATTGAATGGGATCTTCCAAGGTGTC--GGGCTGCGGGGAAGCTGGCAGGTGCCACCCTGGCTCCTTCCAGATACAGGTGTCCATGTTGCAGT--GGGGGTATCTCCTGACCTCCCTCTTAGTCCTGAAGGGCCTGGGCAGGGTCCGGTGTTGGGGTCCCCGTGGGCTTCCTGGGTTAGGCCTGTCCCATGGTCCT-GGGCTGTCCAGGACACATTCGGAGGGGACATGGGCCCAGCAGCCCTGTTGGAAATCATAATAGGGGAACCAAGGGCTCCCCACATCCGAGTCTGTCAGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAGGACAGGACAGGGTGTGAAAGGAGGAGGCACTCATGGCGGGGAAGCTGACCAGATGTGCTGCTGGAACCGTGCTAGTGGGCCTGGAGGGGCCTGCCCACCCCACTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCTGGCTCAGGCCTGGGTGCCGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGGCGTGGTCAGCATCTCCAGTGAGCCCATGCAGTTCTTTCT-GATCAGGCCCCACCTTTCTGGGTCTCTAGAGTCCTCGAGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTCGGGGCATGGCAGGTGGCT i macNem1.NW_012014910v1 I 17 C 0 s cerAty1.NW_012006043v1 1948090 1042 - 8458610 TGCAAGGCTTCGGGATCTCTTCCCAGTTCTGTGAGGTGAATTGTGACAGTGCAGAGCTCTGCAGTGCCAGGGTCGCCTGCATGGTCATGCTGACTGCAACTGGGAGCCCACCACAGCCCTGCTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGACCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCTATGCTGCTGGCTGTCCAGGGATGCAGGGATGCCATGCTCACCTCTTTCTCTCTCGTGGCCTTGATGGGACCAGCTTTCCCATTGAATGGGATCTTCCAAGGTGTC--GGGCTGCGGGGAAGCTGGCAGGTGCCACCCTGGCTCCTTCCAGATACAGGTGTCCATGTTGCAGT--GGGGGTATCTCCTGACCTCCCTCTTAGTCCTGAAGGGCCTGGGCAGGGTCCGGTGTTGGGGTCCCCGTGGGCTTCCTGGGTTAGGCCTGTCCCATGGTCCT-GGGCTGTCCAGGACACATTCGGAGGGGACATGGGCCCAGCAGCCCTGTTGGAAATCATAATAGGGGAACCAAGGGCTCCCCACATCCGAGTCTGTCAGGAGCTGAGGCAGGGAGTTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAGGACAGGACAGGGTGTGAAAGGAGGAGGCACTCATGGCGGGGAAGCTGACCAGATGTGCTGCTGGAACTGCGCTAGTGGGCCTGGAGGGGCCTGCCCACCCCACTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCTGGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAACAGGCGTGGTCAGCATCTCCAGTGAGCCCATGCAGTTCTTTCT-GATCAGGCCCCACCTTTCTGGGTCTCTAGAGTCCTCGAGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTCGGGGCATGGCAGGTGGCT i cerAty1.NW_012006043v1 I 9 C 0 s manLeu1.NW_012106252v1 2133144 1030 + 4244037 TGCAAGGCTTCGGGATCTCTTCCCGGTTCTGTGAGGTGAATTGTGACAGTGCAGA------------CAGGGTCGCCTGCATGGTCATGCTGACTGCAACTGGGAGCCCACTACAGCCCTGCTACCCCTCTCTTCCCAGGGCTGGGGTCTAGGCCAGACCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCTATGCTGCTGCCTGTCCGGGGCTGCAGGGATGCCATGCTCACCTCTTTCTCTCTCGTGGCCTTGATGGGACCAGCTTTCCCATTGAATGGGATCTTCCAAGGTGTC--AGGCTGCGGGGAAGCTGGCAGGTGCCACCCTGGCTCCTTCCAGATACAGGTGTCCATGTTGCAGT--GGGGGTATCTCCTGACCTCCCTCTTAGTCCTGAAGGGCCTGGGCAGGGTCCAGTGTTGGGGTCCCCATGGGCTTCCTGGGTTAGGCCTGTCCCATGGTCCT-GGGCTGTCCAGGACACATTCGGAGGGGACATGGGCCCAGCAGCCCTGTTCGAAATCATAATAGGGGAACCAAGGGCTCCCCACATCCGAGTCTGTCAGGAACTGAGGCAGGGAGCTCCACTGCAGGTACCTCCAGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAGGACAGGACAGGGTGTGAAAGGAGGAGGCACTCATGGCGGGGAAGCTGACCAGATGTGCTGCTGGAACTGCGCTAGTGGGCCTGGAGGGGCCTGCCCACCCCACTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCTGGCTCAGGCCTGGGTGCTGAGGACCCTTGCTTGGGTTTGGCTGAAAGGAAAACAGGCGTGGTCAGCATCTCCAGTGAGCCCATGCAGTTCTTTCT-GATCAGGCCCCACCTTTCTGGGTCTCTAGAGTCCTCGAGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTGTGTGCCGCCTGGGGTGGGGAAGCTGTCGGGGCATGGCAGGTGGCT i manLeu1.NW_012106252v1 I 9 C 0 s colAng1.NW_012122154v1 2155923 1043 + 4569836 TGCAAGGCTTCGGGATCTTTTCCCGGTTCTGTGAGGTGAATTGTGACAGTGCAGAGCTCTGCAGCGCCAGGGTCGCCTGCATGGTCATGCTGACTGCAACTGGGAGCCCACCACAGCCCTGATACCCCTCTCTTCCCAGGGCTGGGGACTAGGCCAGGCCCCTCTTGGCCTGGGAATTGTGCCCCAGGTCCATGCTGCTGGCTGTCTGGGGTTGTGGGGATGCCATGCTCACCTCTTTCTCTCTTGTGGCCTTGATGAGACCAGCTTCCCCATTGAATGGGATCTTCCAAGGTGTC--GGGCTGCGGGGAAGCTGGCAGGTGCCACCCTGGCTCCTTCCAGATATAGGTGTCCATGATGCAGT--GGGGGTATCTCCTGACCTCCCTCTTAGTCCTGATGGGCCTGGGCAGGGCCTGGTGTTGGGGTCCCCATGGGCTTCCTGGGCTAGGCCTGTCCCATGGCCCTGGGGCTGTCCAGGACACATTTGGAGGGGACATGGGCCCAGCAGCCCTGTTCGAAATCATAATGGGGGAACCAAGGGCTCCCCACATCCGAGTCTGTCAGGAGCTGAGGCAGGGAGTTCCACTGCAGATACCTCCCGGAAACCCGAGGTCCTCCCTGAGCTGGGGCCAGGCTGGGCACACCCTGGGATAGCCCCACCAGGACAGGGCAGGGTGTGAAAGGAGGAGGCACTCATGGCAGGGAAGCTGACCAAATGTGCTGCTGGAACCGCGCTAGTGGGCCTGGAGGGGCCTGCCCACCCCACTTGCAGAGGGTCTTCCTGCCACACGGTGAAGCCGGCTCAGGCCTGGGTGCCAAGGACCCTTGCTTAGGTTTGGCTGAAAGGAAAAGAGGCGTGGTCAGCATCTCCAGTGAGCCCATGCAGTTCTTTCT-GATCAGGCCCCACCTTCCCGGGTCTCTAGAGTCCTCGAGGTCTCTGTGTGGCCCCCGTGGCCTGACAGGACACGCCTGTAGGCTGCTGATCCCAGAGGGAGGGAGTATGTGCCACCTGGGGTGGCGAAGCTGTTGGGGCATGGCAGGTGGCT i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C a score=8499093.000000 s hg38.chr17_GL383564v2_alt 112219 2163 + 133151 CCTGGGACTGCCTTCTGGGACTGCCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGGCCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTTGGTTGTCACCCAGCCCCCTTGTCACCTCACATGGGGACCTATCTCCACAGTGGGTGAGAGGACCCGGACACAGGGCCCTTTCTGCCCTCCTGGGCTGCCCAGTCCATGCCGGGACTGACTGTTCCCACAGCTGGCTGAACTCTTGGCTCTGGCTCTGGGCCAGGGGTCCCACCCGTGCCCTCTCCCTGAATGCTCTGGGAGTCAGGGACACCAATTCCCTTGTCTCCCTGGCTCGAGACTTGTTTTTCTGGCACCCTTGGAAGGGTGTGCAGGAGTGAGGGTCCTCTGCTGCTCTCTGAGTCTGTCAGTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGCCTGGCTCTTCCAATGCCCTTGAGGGCCATTTGAGGGGGAGGGCAGGACAA--TGGAAAGTGGGAGGGGGTTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGTGTGCACAGCACTGAGTACCAGTACACACGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGCATCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCACAGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTTGGTGGGGGGACTGGGTATTGGAGCCTTCCTGGGGGTGGCAGGTCCCCATGCTTCCTGGTAGTTTCCTTACAGAGCACAGAGGCCTGAAGGTGCCTAAGAACTGCATCACTGTCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGCGCCCACAGGCCAGACCTGGAAGCCTTCATGAGGTGCTCTAGGGACA-GGGTGAGGATCAGGCCAGGAAAGTTCCCTGGGAGGCGTCAGAGCCGACACCCCATTGCCACCTCTGTCGTCTCCCACTGGGTGGTGCCGGATCATTTTGTGGCCACAACAGGGGTGCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGCAGGGAAGTGCTTGCCACACTCCCGACTTTCATCTGGGTCACGTGCGGGATGGGCTCGGCATCACTGTGCCCTG-CCCTGCTCACCAGGCCAGACCTTCTTCTGGGCTGGAGCAGAGAAACATGGGGACAGTGTGAGGAAGCTGCCCTTGGGCCAGTCGGGGTCTGACCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTGAAGGCAGTGCGTGCCATTGGCATCAACACCTGTTCCTTTCTACCAAATACACCCTCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACA-CAGGTGTGGGAGGCCCTGGCTCGTCCAGGCTGGAGGCTGGTGGCTGGATCTGGGCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGACCCCTCCAGGAGGCTGGGTCTGGCTTCCCTGAGCCCTCCCAAGTTAGGTCCTGGGTCAGTCTATCCATGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCTTGGGCAGAGGGCCTTGCTTGTGTGTCCTACAGGGACCTGCCTGAGCCTCCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGAAGTAGAGCACTGCAGGGCAAGGAGGGTCCCTGAGCCACGGTCTCCCTGTGCCTCCTTATCCCATTGATCACCCTCTGTAGAAGCCAAGCTAATGAGGAACCTTGAGCACATAGCCCTTCCGTGTCCCGACAGGAGGAACAGAGGTGCTCAGGGCCCCCTAGCCTGCCCTAAAAACCTCCTTCTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAGTACTGGGTGGTGTCCAGGGCTCCCCACAACACCTTCCCCCTTCCTGCATTCCCAGTGGACACACTGCCCTCAGCCCTGCTCTGCAGGAGCTGGGCCCCTGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACCCAACTCCCAGTACATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC s panTro5.chr17 16301332 2164 + 83181570 CCTGGGACTGCCTTCTGGGACTGCCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGCTGGGCCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTTGGTTGTCACCCAGCCCCCTTGTCACCTCACATGGGGACCTATTTCCACAGTGGGTGAGAGGACCCGGACACGGGGCCCTTTCTGCCCTCCTGGGCTGCCCAGTCCATGCCGGGACTGACTGTTCCCACATCTGGCTGAACTCTTGGCTCTGGCTCTGGGCCAGGGGTCCCACCCGTGCCCTCTCCCTGAATGCTCTGAGAGTCAGGGACACCAATTCCCTTGTCTCCCTGGCTCGAGACTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCCGGAGTGAGGGTCCTCTGCCGCTCTCTGAGTCTGTCAGTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGCCTGGCTCTTCCAATGCCCTTGAGGGCCATTTGAGGGGGAGGGTGGGACAA--TGGAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACACGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGCGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCACAGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTCAGTGGGGGGACTGGGTATTGGAGCCTTCCTGGGGGTGGCAGGTCCCCATGCTTCCTGGTAGTTTCCTTACAGAGCACAGAGGCCTGAAGATGCCTAAGAACTGCATCACTGTCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGCGCCCACAGGCCAGACCTGAAAGCCTTCATGAGGTGCTCTAGGGACA-GGGTGAGGATCAGGCCAGGAAAGTTCCCTGGGAGGCGTCAGAGCCGACACCCCATTGCCACCTCTGTCGTCTCCCACTGGGTGGTGCCGGATCGTTTTGTGGCCACCACAGGGGTGCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGCAGGGAAGTGCTCGCCACACTCCCGACTTTCATCTGGGTCACGTGCGGGATGGGCTCGGCATCACTGTGCCCTG-CCCTGCTCACCAGGCCAGACCTTCTTCTGGGCTGGAGCAGAGAAACATGGGGACAGTGTGAGGAAGCTGCCCTTGGGCCAGGCGGGGTCTGACCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTAAAGGCAGTGCGTGCCATTGGCATCAACACCTGTTCCTCTCTACCAAATACACCCTCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAGCAGGTGTGGGAGGCCCTGGCTCTTCCAGGCTGGAGGCTGGTGGCTGGATCTGGGCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGACCCCTCCAGGAGGCTGGATCTGGCTTCCCTGAGCCCTCCCAGGTTAGGTCCTGGGTCAGTCTGTCCATGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCTTGGGCAGAGGGCCTTGCTTGTGTGTCCTACAGGGACCTGCCTGAGCCTCCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGAAGTAGGGCACTGCAGGGCAAGGAGGGTCCCTGAGCCACGGTCTCCCTGTGCCTCCTTATCCCATTGATCACCCTCTGTAGAAGCCTAGCTAATGAGGAACCTTGAGCACATAGCCCCTCCGTGTCCCGACAGGAGGAACAGAGGTGCTCAGGGCCCCCTGGCCTGCCCTAAAAACCTCCCTCTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAGTACTGGGTGGTGTCCAGGGCTCCCCACAACACCTTCCCCCTTCCTGCATTCCCAGTGGACACACTGCCCTCCGCCCTGCTCTGCAGGAGCTGGGCCCCTGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACCCAACTCCCAGTGCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16206194 2164 + 83442489 CCTGGGACTGCCTTCTGGGACTTCCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTATCACCCTCATCCCAGGGCTGCTGGGCCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTTGGTTGTCACCCAGCCCCCTTGTCACCTCACATGGGGACCTATCTCCACAGTGGGTGAGAGGACCCGGACACGGGGCCCTTTCTGCCCTCCTGGGCTGCCCAGTCCATGCCGGGACTGACTGTTCCCACATCTGGCTGAACTCTTGGCTCTGGCTCTGGGCCAGGGGTCCCACCCGTGCCCTCTCCCTGAATGCTCTGGGAGTCAGGGACACCAATTCCCTTGTCTCCCTGGCTCGAGACTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCCGGAGTGAGGGTCCTCTGCCGCTCTCTGAGTCTGTCAGTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGCCTGGCTCTTCCAATGCCCTTGAGGGCCATTTGAGGGGGAGGGTGGGACAA--TGGAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACATGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGCGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCACAGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTCGGTGGGGGGACTGGGTATTGGAGCCTTCCTGGGGGTGGCAGGTCCCCATGCTTCCTGGTAGTTTCCTTACAGAGCACAGAGGCCTGAAGGTGCCTAAGAACTGCATCACTGTCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGCGCCCACAGGCCAGACCTGAAAGCCTTCATGAGGTGCTCTAGGGACA-GGGTGAGGATCAGGCCAGGAAAGTTCCCTGGGAGGCGTCAGAGCCGACACCCCATTGCCACCTCTGTCGTCTCCCACTGGGTGGTGCCGGATCGTTTTGTGGCCACCACAGGGGTGCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGCAGGGAAGTGCTCGCCACACTCCCGACTTTCATCTGGGTCACGTGCGGGATGGGCTCGGCATCACTGTGCCCTG-CCCTGCTCACCAGGCCAGACCTTCTTCTGGGCTGGAGCAGAGAAACATGGGGACAGTGTGAGGAAGCTGCCCTTGGGCCAGGCGGGGTCTGACCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCCGAACCTTAAAGGCAGTGCGTGCCATTGGCATCAACACCTGTTCCTCTCTACCAAATACACCCTCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAGCAGGTGTGGGAGGCCCTGGCTCTTCCAGGCTGGAGGCTGGTGGCTGGATCTGGGCCCCCT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGACCCCTCCAGGAGGCTGGATCTGGCTTCCCTGAGCCCTCCCAAGTTAGGTCCTGGGTCAGTCTGTCCATGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCTTGGGCAGAGGGCCTTGCTTGTGTGTCCTACAGGGACCTGCCTGAGCCTCCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGAAGTAGGGCACTGCAGGACAAGGAGGGTCCCTGAGCCACGGTCTCCCTGTGCCTCCTTATCCCATTGATCACCCTCTGTAGAAGCCAAGCTAATGAGGAACCTTGAGCACATAGCCCCTCCGTGTCCCGACAGGAGGAACAGAGGTGCTCAGGGCCCCCTGGCCTGCCCTAAAAACCTCCCTCTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAGTACTGGGTGGTGTCCAGGGCTCCCCACAACACCTTCCCCCTTCCTGCATTCCCAGTGGACACACTGCCCTCCGCCCTGCTCTGCAGGAGCTGGGCCCCTGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACCCAACTCCCAGTGCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4041255 2233 + 4267968 CCTGGGACTGCCTTCTGGGACTGCCTCCCAGAGTTCAGGCTCGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGGCCTGGGATAGAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTTGGCTGTCACCCAGCCCCCTTGTCACCTCACATGGGGACCTATCTCCACAGTGGGTGAGAGGACCCGGACACGGGGCCCTTTCTGCCCTTCTGGGCTGCCCAGTCCATGCCGGGACTGACTGTTCCCACATCTGGCTGAACTCTTGGCTCTGGCTCTGGGCCAGGGGTCCCACCCGTGCCCTCTCCCTGAATGCTCTGGGAGTCAGGGACACCAATTCCCTTGTCTCCCTGGCTCGAGACTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCAGGAGTGAGGGTCCTCTGCCGCTCTCTGAGTCTGTCAGTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGCCTGGCTCTTCCAATGCCCTTGAGGGCCATTTGAGGGGGAGGGCGGGACAA--TGGAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCTCCTCCTGCGTGCACAGCACTGAGTACCAGTACACACGCACTGAGCGCCTGCCCTGAGGACCGGTTGGCCTCCTGCGTGCACAGCACTGAGTACCAGTACACACGCACTGAGCGCCTGCCCTGAGGACCGGTTGGCCTCCTGCACTTACTTAGCGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCACAGGCACTCCCCCACTACTGACTGCCCCAGAAGGTGACTCGGTGGGGGGACTGGGTATTGGAGCCTTCCTGGGGGTGGCAGGTCCCCATGCTTCCTGGTAGTTTCCTCACAGAGCACAGAGGCCTGAAGGTGCCTAAGAACTGCATCACTGTCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACACGCCCACAGGCCAGACCTGGAAGCCTTCATGAGGTGCTCTAGGGACA-GGGTGAGGATCAGGCCAGGAAAGTTCCCTGGGAGGTGTCAGAGCTGACACCCCATTGCCACCTCTGTCGTCTCCCACTGGGTGGTGCCGGATCGTTTTGTGGCCACCACAGGGGTGCAGAATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGCAGGGAAGTGCTCGCCACACTCCCGACTTTCAGCTGGGTCACGTGTGTGATGGGCTCGGCATCACTGTGCCCTGCCCCTGCTCACCAGGCCAGACCTTCTTCTGCGCTGGAGCAGAGAAACATGGGGACAGTGTGAGGAAGCTGCCCTTGGGCCAGTCGGGGTCTGACCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTAAAGGCAGTGCGTGCCATTGGCATCAACACCTGTTCCTCTCTACCAAATACACCCTCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAGCAGGTGTGGGAGGCCCTGGCTCTTCCAGGCTGGAGGCTGGTGGCTGGATCTGGGCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGACCCCTCCAGGAGGCTGGGTCTGGCTTCCCTGAGCCCTTCCAAGTTAGGTCCTGGGTCAGTCTGTCCATGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCTTGGGCAGAGGGCCTTGCTTGTGTGTCCTACAGGGACCTGCCTGAGCCTCCTGTGGGCTGAGGGTGAGCCAGACCCCTGGGCTGGGGAAGTAGGGCACTGCAGGGCAAGGAGGGTCCCTGAGCCACGGTCTCCCTGTGCCTCCTTATCCCATTGACCACCCTCTGTAGAAGCCAAGCTAATGAGGAACCTTGAGCACATAGCCCTTCCGTGTCCTGACAGGAGGAACAGAGGTGCTCAGGGCCCCCTGGCCTGCCCTAAAAACCTCCCTCTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAGTACTGGGTGGTGTCCTGGGCTCCCCACAACACCTTCCCCCTTCCTGCATTCCCAGTGGACACACTGCCCTCAGCCCTGCTCTGCAGGAGCTGGGCCCCTGTCCCTGTTCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACCCAACTCCCAGTGCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30094260 2145 - 77216781 -------------CCTGGGACTACCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGACCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTGGGCTGTCACTCAGCCCCCTTGCCACCTCACATGGGGACCTGTCTCCACAGTGGGTGAGAGGACCTGGACACGGGGCCCTTTCTGCCCTCCTGAGCTGCCCAGTCCCTGCCAGGACTGACTGTTCCCACATCTGGCTAAACTCTTGGCACTGGCTCTGGGCCAGGGGTCCCACCCATGCCCTCTCCCTGAATGCTCTGGAGGTCAAGGACACCAATTCCCTTGTCTCCCTGGCTCAAGGCTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTCACTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGTCTGGCTCCTCCAGTGCCCTTGAGGGCCATTTGAGGGGCAGGGCGGGACAATGTGAAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACATGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGAGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCCTGGGCACTCCCCAACTATTGACTGCCCCAGAAGGTGACTCGGTGAGAGGACTGGGTACTGGAGCCTACCCTGGGGTGGCAGGTCCCCATGCTTTCTGGTAGTTTCCT-------CACAGAGGCCCAAAGGTGCATAAGAACTGCGTCACCATCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGTGCCCCCAGGCCAGACCTGGAAAACTTCATGAGGTGCTCTAGGGACA-GGGTGGGAATCAGGCCGGGAAAGTTCCCTGGGAGGTGTCAGAGCCCATACCCCATTGCCACCTCTGTCATCTCCCACTGGGTGGTGCTGGACCCTTTTGTGGCCACCCCAGGGGTCCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGTGGGGAACTGCTTGCCACACTTCCGACTTTCATCTGGGTCACGTGTGGGATGGGCTCGGTGTCACTGTGCCCTG-ACCTGCCCACCAGGCCAGACCTCCTTCTGGGCTGGAGCAGAGGAACATGGGGACAGTGTGAATAAGCTGCCCTTGGGCCAGTCGGAGTCTGATCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTCAAGTCAGTGCATGTCATCGGCATCAACACCTGTTCCCCTCTACCAAATACATGCCCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAACAGGCATGGGAGGCCCTGGTGCTTCCAGGCTGAAGGCTAGAGACTGGATCTGGTCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGATCCCTCCAGGAGGCTGGGTCTAGCTTCCCGGAGCCCTCCCAAGTCAGGTCCTGGGCCAGTCTGTCCACGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATAACCCCTCCTGGGCAGAGGGCTTTGCTTGTGTGTCCTACAGGGACCTTCCTGCGCCTTCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGGAGCAGGACACTGCAGGGCAAGGAGGGTCCCTGAGCCA-GGTCTCCCTGTGCCTCCTTACCCCATCAATCACCCTCTGGAGAAGCCAAGCTAGTGAGGAACCTTGAGTGCAGAGCCCTTCCGTGTCCCAACGGGAGGAACAGAGGTGCTCAGGGCCCCCTGGGTTGCCCTAAAAACCTCCCTTTTCTAGGGCCTTCTGAAGACCCTTCCCCAAGTGCAGAACACTAGGCGGTGTCCAGGGCTCCCCACAGCACCTTCCCCCTTCCTGCACTCCCGGTGGACACAACGCCCTTAGCCCTGCTCTGCGGGAGCTGGGCTCCAGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACTCAACTGCCAGCCCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTGTCACCAGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28006520 2145 - 80997621 -------------CCTGGGACTACCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGACCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTGGGCTGTCACTCAGCCCCCTTGCCACCTCACATGGGGACCTGTCTCCACAGTGGGTGAGAGGACCTGGACACGGGGCCCTTTCTGCCCTCCTGAGCTGCCCAGTCCCTGCCAGGACTGACTGTTCCCACATCTGGCTAAACTCTTGGCACTGGCTCTGGGCCAGGGGTCCCACCCATGCCCTCTCCCTGAATGCTCTGGAGGTCAAGGACACCAATTCCCTTGTCTCCCTGGCTCAAAGCTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTCACTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGTCTGGCTCCTCCAGTGCCCTTGAGGGCCATTTGAGGGGCAGGGCGGGACAATGTGAAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACATGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGAGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCCTGGGCACTTCCCCACTATTGACTGCCCCAGAAGGTGACTCGGTGAGAGGACTGGGTACTGGAGCCTGCCCTGGGGTGGCAGGTCCCCATGCTTTCTGGTAGTTTCCT-------CACAGAGGCCCAAAGGTGCATAAGAACTGCGTCACCATCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGTGCCCCCAGGCCAGACCTGGAACACTTCATGAGGTGCTCTAGGGACA-GGGTGGGAATCAGGCCGGGAAAGTTCCCTGGGAGGGGTCAGAGCCCATACCCCATTGCCACCTCTGTCATCTCCCACTGGGTGGTGCTGGACCCTTTTGTGGCCACCCCAGGGGTCCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGTGGGGAACTGCTTGCCACACTTCCGACTTTCATCTGGGTCACGTGTGGGATGGGCTCGGTGTCACTGTGCCCTG-ACCTGCCCACCAGGCCAGACCTCCTTCTGGGCTGGAGCAGAGGAACATGGGGACAGTGTGAGTAAGCTGCCCTTGGGCCAGTCGGAGTCTGATCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTCAAGTCAGTGCATGTCATCGGCATCAACACCTGTTCCCCTCTACCAAATACATGCCCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAACAGGCATGGGAGGCCCTGGCGCTTCCAGGCTGAAGGCTGGAGACTGGATCTGGTCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGATCCCTCCAGGAGGCTGGGTCTAGCTTCCCGGAGCCCTCCCAAGTCAGGTCCTGGGCCAGTCTGTCCACGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCCTGGGCAGAGGGCTTTGCTTGTGTGTCCTACAGGGACCTTCCTGCGCCTTCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGGAGCAGGACACTGCAGGGCAAGGAGGGTCCCTGAGCCA-GGTCTCCCTGTGCCTCCTTACCCCATCAATCACCCTCTGGAGAAGCCAAGCTAGTGAGGAACCTTGAGTGCAGAGCCCTTCCGTGTCCCAACGGGAGGAACAGAGGTGCTCAGGGCCCCCTGGGTTGCCCTAAAAACCTCCCTTTTCTAGGGCCTTCTGAAGACCCTTCCCCAAGTGCAGAACACTAGGCGGTGTCCAGGGCTCCCCACAGCACCTTCCCCCTTCCTGCACTCCCGGTGGACACAACGCCCTTAGCCCTGCTCTGCGGGAGCTGGGCTCCAGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACTCAACTGCCAGCCCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2064223 2145 + 10377808 -------------CCTGGGACTACCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGACCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTGGGCTGTCACCCAGCCCCCTTGCCACCTCACATGGGGACCTGTCTCCACAGTGGGTGAGAGGACCTGGACACGGGGCCCTTTCTGCCCTCCTGAGCTGCCCAGTCCCTGCCAGGACTGACTGTTCCCACATCTGGCTAAACTCTTGGCACTGGCTCTGGGCCAGGGGTCCCACCTGTGCCCTCTCCCTGAATGCTCTGGAGGTCAAGGACACCAATTCCCTTGTCTCCCTGGCTCAAGGCTTGTTTTCCTGGCACCCTTGGAAAGGTGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTCACTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGTCTGGCTCCTCCAGTGCCCTTGAGGGCCATTTGAGGGGCAGGGCGGGACAATGTGAAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACATGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGAGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCCTGGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTCGGTGAGAGGACTGGGTACTGGAGCCTACCCTGGGGTGGCAGGTCCCCATGCTTTCTGGTAGTTTCCT-------CACAGAGGCCCAAAGGTGCATAAGAACTGCGTCACCATCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGTGCCCCCAGGCCAGACCCGGAAAACTTCATGAGGTGCTCTAGGGACA-GGGTGGGAATCAGGCCGGGAAAGTTCCCTGGGAGGGGTCAGAGCCCATACCCCATTGCCACCTCTGTCATCTCCCACTGGGTGGTGCTGGACCCTTTTGTGGCCACCCCAGGGGTCCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGTGGGGAACTGCTTGCCACACTTCTGACTTTCATCTGGGTCACGTGTGGGATGGGCTCGGTGTCACTGTGCCCTG-ACCTGCCCACCAGGCCAGACCTCCTTCTGGGCTGGAGCAGAGGAACATGGGGACAGTGTGAGTAAGCTGCCCTTGGGCCAGTCGGAGTCTGATCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTCAAGTCAGTGCATGTCATCGGCATCAACACCTGTTCCCCTCTACCAAATACATGCCCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAACAGGCATGGGAGGCCCTGGCGCTTCCAGGCTGAAGGCTGGAGACTGGATCTGGTCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGATCCCTCCAGGAGGCTGGGTCTAGCTTCCCGGAGCCCTCCCAAGTCAGGTCCTGGGCCAGTCTGTCCACGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCCTGGGCAGAGGGCTTTGCTTGTGTGTCCTACAGGGACCTTCCTGCGCCTTCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGGAGCAGGACACTGCAGGGCAAGGAGGGTCCCTGAGCCA-GGTCTCCCTGTGCCTCCTTACCCCATCAATCACCCTCTGGAGAAGCCAAGCTAGTGAGGAACCTTGAGTGCAGAGCCCTTCCGTGTCCCAACGGGAGGAACAGAGGTGCTCAGGGCCCCCTGGGTTGCCCTAAAAACCTCCCTTTTCTAGGGCCTTCTGAAGACCCTTCCCCAAGTGCAGAACACTAGGCGGTGTCCAGGGCTCCCCACAGCACCTTCCCCCTTCCTGCACTCCCGGTGGACACAACGCCCTTAGCCCTGCTCTGCGGGAGCTGGGCTCCAGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACTCAACTGCCAGCCCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1949132 2143 - 8458610 -------------CCTGGGACTACTTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGACCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTGGGCTGTCACCCAGCCCCCTTGCCACCTCACATGGGGACCTGTCTCCACAGTGGGTGAGAGGACCTGGACACGGGGCCCTTTCTGCCCTCCTGAGCTGCCCAGTCCCTGCCAGGACTGACTGTTCCCACGTCTGGCTAAACTCTTGGCACTGGCTCTGGGCCAGGGGTCCCACCCGTGCCCTCTCCCTGAATGCTCTGGAGGTCAAGGACACCAATTCCCTTGTCTTCCTGGCTCAAGGCTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTCACTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGTCTGGCTCCTCCAGTGCCCTTGAGGGCCATTTGAGGGGCAGGGCGGGACAATGTGAAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACACGCACTGAGCGCCTGCCCTGAGGACCGG-GGGCCTCCCGCACTTACTTAGAGTCCAGGAGGAAGAGGAGGCAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCCTGGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTCGGTGAGAGGACTGGCTACTGGAGCCTACCCTGGGGTGGCGGGTCCCCATGCTTTCTGGTAGTTTCCT-------CACAGAGGCCCAAAGGTGCATAAGAACTGCGTCACCATCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGTGCCCCCAGGCCAGACCTGGAAAACTTCATGAGGTGCTCTAGGGGCA-GGGTGGGAATCAGGCCGGGAAAGTTCCCTGGGAGGGGTCAGAGCCCATACCCCATTGCCACCTCTGTCATCTCCCACTGGGTGGTGCTGGACCCTTTTGTGGCCACCCCAGGGGTCCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGTGGGGAACTGCTTGCCACACTCCCGACTTTCATCTGGGTCACGTGTGGGATGGGCTCAGTGTCACTGTGCCCTG-ACCTGCCCACCAGGCCAGACCTCCTTCTGGGCTGGAGCAGAGGAACATGGGGACAGTGTGAGTAAGCTGCCCTTGGGCCAGTCGGAGTCTGATCCCAGAGCTTCCCAGGCCCCACTGGGCACACGTGGACTCACTCCTCTGAACCTTCAAGTCAGTGCATGTCATCGGCATCAACACCTGTTCCCCTCCACCAAATACATGACCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAACAGGCATGGGAGGCCCTGGCGCTTCCAGGCTGAAGGCTGGAGACTGGATCTGGTCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGATCCCTCCAGGAGGCTGGGTCTAGCTTCCCGGAGCCCTCCCAAGTCAGGTCCTGGGCCAGTCTGTCCACGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCCTGGGCAGAGGGCTTTGCTTGTGTGTCCTACAGGGACCTTCCTGCGCCTTCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGGAGCAGGACACTGCAGGGCAAGGAGGGTCCCTGAGCCA-GGTCTCCCTGTGCCTCCTTACCCCATCAATCACCCTCTGGAGAAGCCAAGCTAGTGAGGAACCTTGAGTGCAGAGCCCTTCCGTGTCCCAACGGGAGGAACAGAGGTGCTCAGGGCCCCCTGGGTTGCCCTAAAAACCTCCCTTTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAACACTGGACGGTGTCCAGGGCTCCCCACAGCACCTT-CCCCTTCCTGCACTCCCGGTGGACACAATGCCCTTAGCCCTGCTCTGCGGGAGCTGGGCTCCAGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACTCAACTGCCAGCCCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2134174 2144 + 4244037 -------------CCTGGGACTACCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGACCTGGGATACAGTCCCCAGTCAGAACTCAGGTGGGAGGGGCCTGGGCTGTCACCCAGCCCCCTTGCCACCTCACATGGGGACCTGTCTCCACAGTGGGTGAGAGGACCTGGACACGGGGCCCTTTCTGCCCTCCTGAGCTGCCCAGTCCCTGCCAGGACTGACTGTTCCCACATCTGGCTAAACTCTTGGCACTGGCTCTGGGCCAGGGGTCCCACCCGTGCCCTCTCCCTGAATGCTCTGGAGGTCAAGGACACCAATTCCCTTGTCTCCCTGGCTCAAGGCTTGTTTTCCTGGCACCCTTGGAAGGGTGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTCACTGCTTGCAGGGAGGGGCGGGGGCTCCCCCAAATAGGCCTGGCTCCTCCAGTGCCCTTGAGGGCCATTTGAGGGGCAGGGCGGGACAATGTGAAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCC-------------------------------------------------------------------CCTCCTGCGTGCACAGCACTGAGTACCAGTACACACGCACTGAGCGCCTGCCCTGAGGACCGGGGGGCCTCCTGCACTTACTTAGAGTCCAGGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGGCCCAGGTTTGGGGTCCTGGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTCGGTGAGAGGACTGGGTACTGGAGCCTACCCTGGGGTGGCAGGTCCCCATGCTTTCTGGTAGTTTCCT-------CACAGAGGCCCAAAGGTGCATAAGAACTGCGTCACCATCCAGGGCCCAGGTTTGGGGGAACTGGTCCTGAAAACGTGCCCCCAGGCCAGACCTGGAAAACTTCATGAGGTGCTCTAGGGACA-GGGTGGGAATCAGGCCGGGAAAGTTCCCTGGGAGGGGTCAGAGCCCATACCCCATTGCCACCTCTGTCATCTCCCACTGGGTGGTGCTGGACCCTTTTGTGGCCACCCCAAGGGTCCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGGAGGCCTGGGTGGGGAACTGCTTGCCACACTCCCGACTTTCATCTGGGTCACGTGTGGGATGGGCTCGGTGTCACTGTGCCCTG-ACCTGCCCACCAGGCCAGACCTCCTTCTGGGCTGGAGCAGAGGAACATGGGGACAGTGTGAGTGAGCTGCCCTTGGGCCAGTCGGAGTCTGATCCCAGAGCTTCCCAGGCCCCACTGGACACACGTGGACTTACTCCTCTGAACCTTCAAGTCAGTGCATGTCATCGGCATCAACACCTGTTCCCCTCTACCAAATACATGCCTCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAACAGGCATGGGAGGCCCTGGCGCTTCCAGGCTGAAGGCTGGAGACTGGATCTGGTCCCACT-GGGGCTTCAGTCCCCCAGAGTCAGTGACCCTCCCCATGAGGGTCATCTGATCCCTCCAGGAGGCTGGGTCTAGCTTCCCGGAGCCCTCCCAAGTCAGGTCCTGGGCCAGTCTGTCCACGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGGGGGATGACCCCTCCTGGGCAGAGGGCTTTGCTTGTGTGTCCTACAGGGACCTTCCTGCGCCTTCTGTGGGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGGAGCAGGACACTGCAGGGCAAGGAGGGTCCCTGAACCT-GGTCTCCCTGTGCCTCCTTACCCCATCAATTACCCTCTGGAGAAGCCAAGCTAGTGAGGAATCTTGAGTGCAGAGCCCTTCCGTGTCCCAACGGGAGGAACAGAGGTGCTCAGGGCCCCCTGGGTTGCCCTAAAAACCTCCCTTTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAACACTGGGCGGTGTCCAGGGCTCCCTACAGCACCTT-CCCCTTCCTGCACTCCCGGTGGACACAACGCCCTTAGCCCTGCTCTGTGGGAGCTGGGCTCCAGTCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACTCAACTGTCAGCCCATGGAGAACCCCACGTCCCAGGTCAGGCGCTGGCTGGGACTCAGCCTCTCACCAGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2156966 2136 + 4569836 -------------CCTGGGACTACCTCCCAGGGTTCAGGCTGGCTGGGGGCTTCCTGCCTTACCACCCTCATCCCAGGGCTGTTGGGCCTGGGATACAGTCCCTAGTCAGAACTCAGGTGGGAGGGGCCTGGGCTGTCAGCCAACCCCCTTGCCACCTCACATGGGGACCAGTCTCCACAGTGGGTGAGAGGACCTGAACAAGGGGCCCTTTCTGCCCTCCTGAGCTGTCCAGTCCATGCCAGGACTGACTGTTCCCACATCTGGCTGAACTCTTGGCACTGGCTCTGGGCCAGGGGTCCCACCCATGCCCTCTCCCTGAATGCTCTGGAGGTCAGGGACACCAATTCCCTTGTCTCCCTGGCTCAA---TTGTTTTCCTGGCACCTTTGGAAGGGTGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTCAGTGCTTGCAGGGAGGGCCGGGGGCTCCCCCAAATAGGTCTGGCTCCTCCAGTGCCCTTGAGGGCCATTTGAGGGGCAGGGCGGGACAACGTGAAAAGTGGGAGGGGGCTTGTTGGAGAGTCTTGCCCACA-------------------------------------------------------------------------TCCTGCGTGCACAGCACTGAGTACCACTACACATGCACTGAGTGCCTGCCCTGAGGACCGGTGGGCCTCCTGCACTTACTTAGAGTCCAAGAGGAAGAGGAGGAAGAAAAGATGTAAGAGGAAGACCCAGGTTTGGGGTCCTGGGCACTCCCCCACTATTGACTGCCCCAGAAGGTGACTCGGTGAGAGGACTGGGTACTGGAGCCTACCCTGGGGTGGCAGGTCCCTATGCTTTCTGGTAGTTTCCT-------CACAGAGGCTCAAAGGTGCATAAGAACTGCATCACCATCCAGGGCCCAGGTTTGGAGGAACTGGTCCCGAAAACGTGCCCACAGGCCAGACCTGGAAAACTTCATGAGGTGCTCTAGGGACACGGGGGGGAATCAGGTCGGGAAAGTTCCCTGGGAGGGGTCAGAGCCCATACCCCATTGCCACTTCTGTCTTCTCCCACTGGGTGGTGCCAGACCCTTTAGTGACCACCCCAGGGGTCCAG-ATGTGCACAGGAGGCTGTGGTTTGGGGAAGGCCTGGGTGGGGAACTGCTTGCCACACTCCCGACTTTCATCTGAGTCACGTGCGGGATGGGCTCGGTGTCACTGTGCCCTG-ACCTGCCCACCAGGCCAGACCTCCTTCTGGGCTGGAGCAGAGGAACATGGGGACAGTGTGAGTAAGCTGTCCTTGGGCCAGTCGGAGTCTGATCCCAGAGCTACCCAGGCCCCACTGGGCACACGTGGACTTACTCCTCTGAACCTTAAAGTCAGTGCATGTCATCGGCATCAACACCTGTTCCCCTCTACCAAATACATGCCCCACAGGCTTAGGGTGAGCCCGAGAGAGATCTGTGGGGACAGTAGGCGTGGGAGGCCCTGGCGCTTCCAGGCTGGAGGCTGGGGACTGGATCTGGTCCCACTGGGGGCTTCAGTCCCCCAGAGTCAGTGAGCCTCCCCATGAGGGTCATCTGATCCCTCCAGGAGGCTGGGTCTAGCTTCCCTGAGCCCACCCAAGTCAGGTCCTGGGCCAGTCTGTCCATGAGGCTGGGCCTGAGCCCTGGCCTCTGCTGAGTGATGACCCCTCCTGGACAGAGGGCTTTGCTTGTGTGTCCTACGGGGACCTTCCTGAGCCTTCTGT-GGCTGGGGGTGAGCCAGACCCCTGGGCTGGGGTAGCAGGACACTGCAGGGCAAGGAGGGTCCCTGAGCCA-GGTCCCCCTGTGCCTCCTTACCCCATCAATCA-CCTCTGGAGAAGCCAAGCTAGTGAGGAACCTTGAGTGCATAGCCCTTCCGTGTCCCAACGGGAGGAACAGAGGTGCTCAGGGCCCCTTGGGCTGCCCTAAAATCCTCCCTTTTCTAGGGCCCTCTGAAGACCCTTCCCCAAGTGCAGAACACTGGGCGGTGTCCAGGGCTCCCCACAACACCTTCCCCCTTCCTGCACTCCCGGTGGACACAATGCCCTTAGCCCTGCTCTGCGGGAGCTGGGCCCCAGTCCCTGTGCCTCTGTCTCCTCTAGGGCAGGAAAGGTAACTCAACTGCCAGCCCATGGAGAACCCCACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCTCTCACCAGCC i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C e nomLeu3.chrUn_GL397460_1 2024021 0 - 2193130 C a score=6980232.000000 s hg38.chr17_GL383564v2_alt 114382 1487 + 133151 CCACGAGGGGCTCCAGCACCCCCGACTCCTCTGGCCCCATGGGATGCTGGGCCTCTAGGGAAGAGTCGAGGGGACCATAAACTCACCAAGTGCCTCATGGTCTTGGGGTGTGACGTGGGTACCACATGCTCCTGGTGGTCTTGGAGCCCCTGGACCCCTGTGCCATTTGGGCTGTGGAATCCTGAGAAGCCTCCAGCCCATCATGAAATCAGAGCCTGTTCCCAAGATGTGGAACTGTCGGCTGGAATTGCTGGGCAGCTGCAAAGGCCCATGAACACCGGGCCTCCCACCCTCCCACCTGGTGACCCCACCATGCGGCCTTGGCCCTGGGGAAGAGGGATGGGAACATCCTCTGGAGCCTGGCCGGAGGTGCTCCTGGAGGCCTCCTGGGCCCGGGTGCTAGGAAGGCAAGGCTGACTTTGAGGCCATGACAGAGGGC-GGGAAGAACTGGGTGGGTGCTGGGTTTCGTGGTCGTCTCCTGGAAGTGGGGTCGGGCCAGGGTACATGGGAAGGGGAGATGCTGCCATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTCACGGAGGGGACAGTCAGTTGCACAGAATCAGAGCCAGAGGGTGTGGCTCCAGGCCACAGAGGGCAGCCACGGGGGGATAAGATGTCCTCTGTTGATGGAGATAAAAGGCGTCTCATTTGGGGCCTGGGGGTACCTGTGTAGCCCTGGGGGTATCCGTTCAGTCCTGGGCTTCTGTGGGGCCCTCAGCAGAGACATTCTAAAGGCTCCAGATAAGTTGGCGACACAGGAAGGTGCCTTCACTAAAAGTGGAGGTCACCTGGCCAGGGTGGCTGAGAAAAATCAGCCCGAGACGGGACAGGTGCCACCCAGGGTGGGTAGCCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCACCCTGCTGAGGTTTAGGGATCCTGGCCTGAGACTTGCCTGGTGTACCCAGGGTGCATCCAGGGCCCATCCCACCCGACATTCCCAAGCCCTCACAGGGTCTGACCTCCCG--------------------GCATCCACCTGCCTCTCCCTGCACTCCAGCCACCCACCCTGCTTGTTCCCCAATTTCTGCCATCCTGT-CAACCCAGAGATGGTGAATGTTTCCCCAGCCACCCTGGCCCTTCTTTGATCCTTGTCCTGTCAGAACCCCCGAGTGATACTCCCCAGATCTGTTCACATGCCTGCCTTGTCTGCTCTCTCATTGGGCTGCCGATGGCTGCTGGGGAGATGCCAAGGGTGACATGGGTGACCGAGGACCCCACAGATGGCCAGGATGGCTTCCCTGCCCCACCTCCAGCCTCACCTGGCTCT-TGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGCCTGACTGTCCTCTCCCACTGTCCCGCCTGCCTTAAGTCAGTCTCCCCCATCACTT s panTro5.chr17 16303496 1488 + 83181570 CCACGAGGGGCTCCAGCACCCCCGACTCCTCTGGCCCCATGGGATGCTGGGCCTCTAGGGAAGAGTCGAGGGGACCATAAACTCACCAAGTGCCTCATGGTCTTGGGGTGTGGCGTGGGTACCACATGCTCCTGGTGGTCTTGGAGCCCCTGGACCCCTGTGCCATTTGGGCTGTGGAATCCTGAGAAGCCCCCAGCCCATCATCAAATCAGAGCCTGTTCCCAAGATGTGGAACTGTCGGCTGGAATTGCTGGGCAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTCCCACCTGGTGACCCCACCATGCGGCCTTGGCCCTGGGGAAGAGGGATGGGAACATCCTCTGGAGCCTGGCCGGAGGTGCTCCTGGAGGCCTCCTGGGCCAGGGTGCTAGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGGC-GGGAAGAACTGGGTGGGTGCTGGGTTTTGTGGTCGTCTCCTGGAAGTGGGGTCGGGCCAGGGGACATGGGAAGGGGAAATGCTGCCATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTCACGGAGGGGACAGTCAGTTGCACAGAATCAGAGCCAGAGGGTGTGGCTCCAGGACACAGAGGGCAGCCACAGGGGGATAAGATGCCCTCTGTTTATGGAGATAAAAGGCGTCTCATTTGGGGCCTGGGGGTACCTGTGTAGCCCTGGGGGTATCCGTTCAGTCCTGGGCTTCTGTGGGGCCCTCAGCAGAAACATTCTAAAGGCTCCAGATAAGTTGGTGACACAGGAAGGTGCCTTAACTAAAAGTGGAGGTCACCTGGCCAGGGTGGCTGAGAAAAATCAGCCCGAGACGGGACAGGTGCCACCCAGGGTGGGTAGCCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCACCCTGCTGAGGTTTAGGGACCCTGGCCTGAGACTTGCCTGGTGAACCCAGGGTGCGTCCAGGGCCCATCCCACCCGACATTCCCAAGCCCTCACAGGGTCTGACCTCCCG--------------------GCATCCACCTGCCTCTCCCTGCACTCCAGCCACCCACCCTGCTTGTTCCCCAATTTCTGCCATCCTGTCCAACCCAGAGACGGTGAATGTTTCCCCAGCCACCCTGGCCCTTCTTTGATCCTTGTCCTGTCAGAACCCCCGAGTGATACTCCCCAGATCTGTTCACATGCCTGCCTTGTCTGCTCTCTCATTGGGCTGCCGACGGCTGCTGGGGAGATGCCAAGGGTGACATGGGTGACCGAGGACCCCACAGATGGCCAGGATGGCTTCCCTGCCCCACCTCCAGCCTCACCTGGCTCT-TGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGCCTGACTGTCCTCTCCCACTGTCCCGCCTGCCTTAAATCAGTCTCCCCCATCACTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16208358 1488 + 83442489 CCACGAGGGGCTCCAGCACCCCCGACTCCTCTGGCCCCATGGGATGCTGGGCCTCTAGGGAAGAGTCGAGGGGACCATAAACTCACCAAGTGCCTCATGGTCTTGGGGTGTGGCGTGGGTACCACATGCTCCTGGTGGTCTTGGAGCCCCTGGACCCCTGTGCCATTTGGGCTGTGGAATCCTGAGAAGCCCCCAGCCCATCATCAAATCAGAGCCTGTTCCCAAGATGTGGAACTGTCGGCTGGAATTGCTGGGCAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTCCCACCTGGTGACCCCACTATGCGGCCTTGGCCCTGGGGAAGAGGGATGGGAACATCCTCTGGAGCCTGGCCGGAGGTGCTCCTGGAGGCCTCCTGGGTCAGGGTGCTAGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGGC-AGGAAGAACTGGGTGGGTGCTGGGTTTCGTGGTCATCTCCTGGAAGTGGGGTCGGGCCAGGGGACATGGGAAGGGGAAATGCTGCCATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTCACGGAGGGGACAGTCAGTTGCACAGAATCAGAGCCAAAGGGTGTGGCTCCAGGACACAGAGGGCAGCCACAGGGAGATAAGATGCCCTCTGTTGATGGAGATAAAAGGCGTCTCATTTGGGGCCTGGGGGTACCTGTGTAGCCCTGGGGGTATCCGTTCAGTCCTGGGCTTCTGTGGGGCCCTCAGCAGAGACATTCTAAAGGCTCCAGATAAGTTGGTGACACAGGAAGGTGCCTTCACTAAAAGTGGAGGTCACCTGGCCAGGGTGGCTGAGAAAAATCAGCCCGAGACGGGACAGGTGCCACCCAGGGTGGGTAGCCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCACCCTGCTGAGGTTTAGGGACCCTGGCCTGAGACTTGCCTGGTGAACCCAGGGTGCATCCAGGGCCCATCCCACCCGACATTCCCAAGCCCTCACAGGGTCTGACCTCCCG--------------------GCATCCACCTGCCTCTCCCTGCACTCCAGCCACCCACCCTGCTTGTTCCCCAATTTCTGCCATCCTGTCCAACCCAGAGACGGTGAACGTTTCCCCAGCCACCCTGGCCCTTCTTTGATCCTCGTCCTGTCAGAACCCCCGAGTGATACTCCCCAGATCTGTTCACATGCCTACCTTGTCTGCTCTCTCATTGGGCTGCCGACGGCTGCTGGGGAGATGCCAAGGGTGACATGGGTGACCGAGGACCCCACAGATGGCCAGGATGGCTTCCCTGCCCCACCTCCAGCCTCACCTGGCTCT-TGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGCCTGACTGTCCTCTCCCACTGTCCCGCCTGCCTTAAGTCAGTCTCCCCCATCACTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4043488 1519 + 4267968 CCATGAGGGGCTCCAGCACCCCCGACTCCTCTGG-CCCATGGGATGCTGGGCCTCTAGGGAAGAGTCGAGGGGACCATAAACTCACCAAGTGCCGCATGGTCTTGGGGTGTGACGTGGGTACCACATGCTCCTGGTGGTCTTGGAGCCCCTGGACCCCTGTGCCATTTGGGCTGTGGAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTGTTCCCAAGATGTGGAACTGTC-GCTGGAATTGCTGGGCGGCTGCAGAGGCCCATGAACACTGGGCCTCCCACCCTCCCACCTGGTGACCCCACCATGCGGCCTTGGCCCTGGGGAAGAGGGATGGGAACATCCTCTGGAGCCTGGCCGGAGGTGCTCCTGGAGGCCTCCTGGGCCAGGGTGCTAGGAAGGCAAGGCTGACTTTGAGGCCATGACAGAGGGC-GGGAAGAACTGGGTGGGTGCTGGGTTTCGTGGTCGTCTCCTGGAAGTGGGGTCGGGCCAGGGGACATGGGAAGGGGAGATGCTGCCATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTCAGGGAGGGGACAGTCAGTTGCACAGAATCAGAGCCAGAGGGTGTGGCTCCAGGACACAGAGGGCAGCCACAGGGGGATAAGATGCCCTCTGTTGATGGAGATAAAAGGCATCTCATTTGGGGCCT-GGGGTACCTGTGTAGCCCTGGGGGTATCCGTTCAGTCCTGGCCTTCTGTGGGGCCCTCAGCAGAGACATTCTAAAGGCTCCAGATAAGTTGGCGACACAGGAAGGTGCCTTCACTAAAAGTGGAGGTCACCTGGCCAGGGTGGCTGAGAAAAATCAGCCCGAGACGGGACAGGTGCCACCCAGGGTGGGTAGCCGGGACCTGACAGGAATCCCTCAGGGAGTGACCACATCACCCTGCTGAGGTTTAGGGACCCTGGCCTGAGACTTACCTGGTGTACCCAGGGTGCATCCAGGGCCCATCCCACCCGACATTCCCAAGCCCTCACAGGGTCTGACCTCCCGGCATCCACCTGCCTCTCCCTGCATCCACCTGCCTCTCCCTGCACTCCAGCCACCCACCCTGCTTGTTCCCCAGTTTCTGCCATCCTGTCCAACCCAGAGACGGTGAATGTTTCCCCAGCCACCCTGGCCCTTCTTTGATCCTTGTCCTGTCAGAACCCCCGAGTGATACTCCCCAGATCTGTTCACATGCCTGCCTTGTCTGCTCTCTCATTGGGCTGCCGACGGCTGCTGGGGAGATGCCAAGGGTGACATGGGTGACCAAGGACCCCACAGATGGCCAGGATGGCTTCCCTGCCCCACCTCCAGCCTCACCTGGCTCT-TGGAGCCCTTGGCTGCCAGCCCTCGGCTGTCAGCCCTCAGCTTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGCCTGACTGTCCTCTCCCACTGTCCTGCCTGCCTTAAGTCAGTCTCCCCCATCACTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2024021 1478 - 2193130 CCACGAGGGGCCCC----------ACTCCTCTGGCCCCATGGGATGCAGGGCCTCTAGGGAAGAGTCGAGGGGACCATAAACTCACTGAGTACCTCATGGTCTTGGGGTGTGATGTGGGTACCACATGCTCCTGGTGGTCTTGGAGCCCCTGGACCCTTGTGCCATTTGGGCTGTGGAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAATTGCTGGGCAGCTGCAGAGGCCCATGAACACCAGGCCTCCCATCCTCCCACCTGGTGACCCCACCACGTGGCCTTGGCCCTAGGGAAGAGGGGTGGGAACATCCCCTGGAGCCTGGCTGGAGGTGCTCCTGGAGGCCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCTATGACAGAGGGC-GGGAAGAACTGGGTGGGTGCTGGGTTTTGTGGTCGTCTCCTGGAAGTGGGGTTGGGCCAGGGGACATGGGAAGGGGAGATGCTGCCATCTGGGCTTCATCGACCCCTCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGTAGGGCAGGAGGACCCTCAGGGAGGGGACAGTCAGCTGCACAGAATCAGAGCCAGAGGGTGTGGCTCCAGGACACAGAGGGCAGCCACGGGGGGATAAGATGCCCTCTGTTGATGGGGATAAAAGGCGTCTCACTCGGGGCCTGGGGGTACCTGTGTAGCCCTGGGGGTATCCGTTCAGACCTGGGCTTCTGTGGGGCCCTCAGCAGAGACATTCTAAAGGCTCCAGACAAGTTGGCGACACAGGAAGGTACCTTCACTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCGAGATGGGACGGGTGCCGCCCAGGGTGGGTGGACGGGCCCTGACAGGAGTCCCTCAGAGAGTGACCACATCACCCCGCTGGGGTTTAGGGAGCCTGGCCTGAGACCTGCCTGGTGTACCCAGGGTGCACCCAGGGCCCATCCCATCCGACATTCCCAAGCCCTCACAGGGTCTGACCCCCCG--------------------ACGTCCACCTGCCTCTCCCTGCACCCCAGCCACCCACCCTGCTTGTTCCCCAATTTCTGCCATCCTGTCCAACCCAGAGACAGTGAATGTTTCCCCAGCCACCCTGGCCCTTCTTTGATCCTTGTCCTGTCAGAACCCCCGAGTGAGACTCCCCAGATCTGCTCACATGCCTGCCTTGTCTGCTCTCTCACTGGGCTGCCGGCGGCTGCTGGGGAGATTCCAAGGGTGAGGTGGGTGACCTAGGACCCCACAGATGGCCAGGATGGCGTCCCTGCCCCACCTCCAGCCACACCTGCCTCT-TGGAACCCTT--------------GGCTGTCAGCCCTCATCCTGATCCCATACACTGAAACAGCTGGTATTGGGGCGCCTGAATGTCCTCCCCCAATGTCCTGCCTGCCACAACTCTGTCTTCCCCATCAATT i nomLeu3.chrUn_GL397460_1 C 0 M 591 s rheMac8.chr16 30096405 1476 - 77216781 CCACGAGGGGCTCCAGCACCCCTGACTCCTCTGGCCCCACGGGACGCAGGGCCTCTAGGGAAGAGTGGAGGGGACCATAAAC----------CCTCAAGGTCTTGGGGTGTGACGCGGGTACCACATGCTCCTGGTGGTCTTGGAGTCCCTGGACCCTTGTACCATTTGGGCTGTGGAATCCTGAGAAGCCCCTAGCCCATCAAGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAATGGCTGAGTAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTCCCATCTGGGGACCCCACCATGCGTCCTTGGCCCTGGGGAGGAAGGGTGGGAACATCCCCTGGAGCCTGGCTGGAGGTGCTCCTGGAGGTCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGACGGGGGGGAACTGGGTGGGTGCTGGGTTTTGTGGTCATCTCCTGGAAGTAGGGTCGGTCCAGGTGACATGCGAAGGGGAGATGCTGACATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTTAGGGAGGGGACAGTCAGCTGCACAGAATCAGAGCCAGAGGATGTGGCTCCAAGACACAGAGGGCGGCCGTGGAGGGACGAGATGCCCTCTGTTGATGGGGATAAAAGGTGTCTCACTCAGGGCCTGGGGGTACCCGTTTAGCCCTGGGGGTACCCGTTCAGACCTGGGCTTCTGTGGGACCCTCAGCAGAGACACTCTAAAGGCTCCAGACAAGCTGGCGACACAGGAAGGTGCTTTCGCTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCAAGACAGGATGGGTGCTGCCCAGGGTGGGTGGCCAGGCTCTGACAGGAGTCCCTCAGGGAGCGACCACATCACCCTACTGGGGTTTAGGGAGCCTGCCCTGAGACCTGTCTGGTGTTCCCAGGGTGCACCCAGGGCCCATCCCACCCGACGTTCCCAAGTCCTCCCAGGGTCTGACCTCCCG--------------------GCGTCCACCTGCCTCTCCCTGCACCCCAGTCACCCACTCTGCTTGTTCCCCGATTTCTGCCATCCTGTCCAACCCAGAGACTGTGAATGTTTCTCCAGCCACCCTGGCCCTTCTTTGACCCTGGTCCTGTCAGAATGCCCGAGTGAGACTCCCCAGATCTGTTCACATG-CTGCCTTGTCTGCTTTCTCACTGGGCTGCTGACCGCTGCTGGGGAGATGCCAAGGGTGACGTGGGTGACCAAGG--CCCACAGATGGCCAGGATGGCTTCCCAGCCCCACCTCCAGCCTCACCTGGCTCTTTGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGTCTGGCTGTCCTCCTCCACTGTCCTGCCTGCCCCAAGAC-GTCTCCCCCATCACTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28008665 1475 - 80997621 CCACGAGGGGCTCCAGCACCCCTGACTCCTCTGGCCCCACGGGACGCAGGGCCTCTAGGGAAGAGTGGAGGGGACCATAAAC----------CCTCATGGTCTTGGGGTGTGACGCGGGTACCACATGCTCCTGGTGGTCTTGGAGTCCCTGGACCCTTGTACCATTTGGGCTGTGGAATCCTGAGAAGCCCCTAGCCCATCAAGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAATGGCTGAGTAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTCCCATCTGGGGACCCCACCATGCGTCCTTGGCCCTGGGGAGGAAGGGTGGGAACATCCCCTGGAGCCTGGCTGGAGGTGCTCCTGGAGGTCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGAC-GGGGGGAACTGGGTGGGTGCTGGGTTTTGTGGTCATCTCCTGGAAGTAGGGTCGGTCCAGGTGACATGCGAAGGGGAGATGCTGACATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTTAGGGAGGGGACAGTCAGCTGCACAGAATCAGAGCCAGAGGATGTGGCTCCAAGACACAGAGGGCGGCCGTGGAGGGACGAGATGCCCTCTGTTGATGGGGATAAAAGGTGTCTCACTCAGGGCCTGGGGGTACCCGTTTAGCCCTGGGGGTACCCGTTCAGACCTGGGCTTCTGTGGGACCCTCAGCAGAGACACTCTAAAGGCTCCAGACAAGCTGGCGACACAGGAAGGTGCTTTCACTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCAAGACAGGATGGGTGCTGCCCAGGGTGGGTGGCCAGGCTCTGACAGGAGTCCCTCAGGGAGCGACCACATCACCCTACTGGGGTTTAGGGAGCCTGCCCTGAGACCTGTCTGGTGTTCCCAGGGTGCACCCAGGGCCCATCCCACCCGACGTTCCCAAGTCCTCCCAGGGTCTGACCTCCTG--------------------GCGTCCACCTGCCTCTCCCTGCACCCCAGTCACCCACTCTGCTTGTTCCCCGATTTCTGCCATCCTGTCCAACCCAGAGACTGTGAATGTTTCTCCAGCCACCCTGGCCCTTCTTTGACCCTGGTCCTGTCAGAATGCCCGAGTGAGACTCCCCAGATCTGTTCACATG-CTGCCTTGTCTGCTTTCTCACTGGGCTGCTGACCGCTGCTGGGGAGATGCCAAGGGTGACGTGGGTGACCAAGG--CCCACAGATGGCCAGGATGGCTTCCCAGCCCCACCTCCAGCCTCACCTGGCTCTTTGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGTCTGGCTGTCCTCCTCCACTGTCCTGCCTGCCCCAAGAC-GTCTCCCCCATCACTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2066368 1475 + 10377808 CCACGAGGGGCTCCAGCACCCCTGACTCCTCTGGCCCCACGGGATGTAGGGCCTCTAGGGAAGAGTGGAGGGGACCATAAAC----------CCTCATGGTCTTGGGGTGTGACGCGGGTACCACATGCTCCTGGTGGTCTTGGAGTCCCTGGACTCTTGTACCATTTGGGCTGTGGAATCCTGAGAAGCCCCTAGCCCATCAAGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAATGGCTGAGTAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTTCCATCTGGGGACCCCACCATGCGTCCTTGGCCCTGGGGAGGAAGGGTGGGAACATCCCCTGGAGCCTGGCTGGAGGTGCTCCTGGAGGTCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGAC-GGGGGGAACTGGGTGGGTGCTGGGTTTTGTGGTCATCTCCTGGAAGTAGTGTCGGTCCAGGTGACATGTGAAGGGGAGATGCTGACATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTTAGGGAGGGGACAGTCAGCTGCACAGAATCAGAGCCAGAGGATGTGGCTCCAAGACACAGAGGGCGGCCGTGGAGGGACGAGATGCCCTCTGTTGATGGGGATAAAAGGTGTCTCACTCAGGGCCTGGGGGTACCCGTTTAGCCCTGGGGGTACCCGTTCAGACCTGGGCTTCTGTGGGACCCTCAGCAGAGACACTCTAAAGGCTCCAGACAAGCTGGCGACACAGGAAGGTGCTTTCGCTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCAAGACAGGATGGGTGCTGCCCAGGGTGGGTGGCCAGGCTCTGACAGGAGTCCCTCAGGGAGCGAGCACATCACCCTACTGGGGTTTAGGGAGCCTGCCCTGAGACCTGTCTGGTGTTCCCAGGGTGCACCCAGGGCCCATCCCACCCGACGTTCCCAAGTCCTCCCAGGGTCTGACCTCCTG--------------------GCGTCCACCTGCCTCTCCCTGCACCCCAGTCACCCACTCTGCTTGTTCCCCGATTTCTGCCATCCTGTCCAACCCAGAGACTGTGAATGTTTCTCCAGCCACCCTGGCCCTTCTTTGACCCTGGTCCTGTCAGAATGCCCGAGTGAGACTCCCCAGATCTGTTCACATG-CTGCCTTGTCTGCTTTCTCACTGGGCTGCTGACCGCTGCTGGGGAGATGCCAAGGGTGACGTGGGTGACCAAGG--CCCACAGATGGCCAGGATGGCTTCCCAGCCCCACCTCCAGCCTCACCTGGCTCTTTGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGTCTGGCTGTCCTCCTCCACTGTCCTGCCTGCCCCAAGAC-GTCTCCCCCATCACTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1951275 1473 - 8458610 CCACGAGGGGTTCCAGCACCCCTGACTCCTCTGGCCCCACGGGACGCAGGGCCTCTAGGGAAGAGTGGAGGGGACCATAAAC----------CCTCATGGTCTTGGGGTGTGACGCGGGTACCACATGCTCCTGGTGGTCTTGGAGTCCCTGGACCCTTGTACCATTTGGGCTGTGGAGTCCTGAGAAGCCCCTAGCCCATCAAGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAATGGCTGAGTAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTCCCATCTGGGGACCCCACCATGCGTCCTTGGCCCTGGGGAGGAAGGGTGGGAACATCCCCTGGAGCCTGGCTGGAGGTGCTCCTGGAGGTCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGAC-AGGGGGAACTGAGTGGGTGCTGGGTTTTGTGGTCATCTCCTGGAAGTAGGGTCGGTCCAGGTGACATGCGAAGGGGAGATGCTGACATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTTAGGGAGGGGACAGTCAGCTGCACAGAATCAGAGCCAGAGGATGTGGCTCCAAGACACAGAGGGCGGCCGTGGAGGGACGAGATGCCCTCTGTTGATGGGGATAAAAGGTGTTTCACTCAGGGCCTGGGGGTACCCGTTTAGCCCTGGGGGTACCCGTTCAGACCTGGGCTTCTGTGGGACCCTCAGCAGAGACACTCTAAAGGCTCCAGACAAGCTGGCGACACAGGAAGGTGCTTTCGCTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCAAGACAGGATGGGTGCTGCCCAGGGTGGGTGGCCAGGCTCTGACGGGAGTCCCTCAGGGAGCGACCACATCACCCTACTGGGGTTTAGGGAGCCTGGCCTGAGACCTGTCTGGTGTTCCCAGGGTGGACCCAGGGCCCATCCCACCCGACGTTCCCAAGTCCTCCCAGGGTCTGACCTCCCG--------------------GCGTCCACCTGCCTCTCCCTGCACCC--GTCACCCACTCTGCTTGTTCCCCAATTTCTGCCATCCTGTCCAACCCAGAGACTGTGAATGTTTCTCCAGCCACCCTGGCCCTTCTTTGACCCTGGTCCTGTCAGAATGCCCGAGTGAGACTCCCCAGATCTGTTCACATG-CTGCCTTGTCTGCTTTCTCACTGGGCTGCTGACCGCTGCTGGGGAGATGCCAAGGGTGACGTGGGTGACCAAGG--CCCACAGATGGCCAGGATGGCTTCCCAGCCGCACCTCCAGCCTCACCTGGCTCTTTGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGTCTGGCTGTCCTCCTCCACTGTCCTGCCTGCCCCAAGAC-GTCTCCCCCATCACTT i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2136318 1457 + 4244037 CCACGAGGGGCTCCAGCACCCCTGACTCCTCTGGCCCCACGGGACGCAGGGCCTCTAGGGAAGAGTGGAGGGGACCATAAAC----------CCTCATGGTCTTGGGGTGTGACGCGGGTACCACATGCTCCTGGTGGTCTTGGAGTCCCTGGACCCTTGTACCATTTGGGCTGTGGAGTCCTGAGAAGCCCCTAGCCCATCAAGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAACGGCTGAGTAGCTGCAGAGGCCCATGAACACCGGGCCTCCCACCCTCCCATCTGGGGACCCCACCATGCGTCCTTGGCCCTGGGGAGGAAGGGTGGGAACATCCCCTGGAGCCTGGCTGGAGGTGCTCCTGGAGGTCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGAC-GGGGGGAACTGGGTGGGTGCTGGGTTTTGTGGTCATCTCCTGGAAGTAGGGTCGGTCCAGGTGACATGCGAAGGGGAGATGCTGACATCTGGGTTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTTAGGGAGGGGACAGTCAGCTGCACAGAATCAGAGCCAGAGGATGTGGCTCCAAGACACAGAGGGCGGCCGTGGAGGGACGAGATGCCCTCTGTTGATGGGGATAAAAGGTGTCTCACTCAGGGCCTGGGGGTACCCATTTAGCCCTGGGGTTACCCGTTCAGACCTGGGCTTCAGTGGGACCCTCAGCAGAGACACTCTAAAGGCTCCAGACAAGCTGGCGACACAGGAAGGTGCTTTCGCTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCAAGACAGGATGGGTGCTGCCCAGGGTGGGTGGCCAGGCTCTGACAGGAGTCCCTCAGGGAGCGACCACATCACCCTACTGGGGTTTAGGGAGCCTGGCCTGAGACCTGTCTGGTGTTCCCAGGGTGCACCCAGGGCCCATCCCACCCGACGTTCCCAAGTCCTCCCAGGGTCTGACCTCCCG--------------------GCGTCCACCTGCCTCTCCCTGCACCCCAGTCACCCACTCTGCTTGTTCCCCGATTTCTGCCATCCTGTCCAACCCAGAGACTGTGAATGTTTCTTCAGCCACCCTGGCCCTTCTTTGACCCTGGTCCTGTCAGAATGCCCGAGTGAGACTCCCCAGATCTGTTCACATG-CTGCCTTGTCTGCTTTTTCACTGGGCTGCTGACCGCTGCTGGGGAGA------------------TGACCAAGG--CCCACAGATGGCCAGGATGGCTTCCCAGCCCCACCTCCAGCCTCACCTGGCTCTTTGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGTCTGGCTGTCCTCCTCCACTGTCCTGCCTGCCCCAAGAC-GTCTCCCCCATCACTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2159102 1484 + 4569836 CCACGAGGGGCTCCAGCACCCCCGACTCCTCTGGCCCCACGGGACGCAGGGCCTCTAGGGAAGAGTGGAGGGGACCATAAACTCACCGAGTGCCTCATGGTCTTGGGGTGTGATGCGGGTACCACATGCTCCTGGTGGTCTTGGAGCCCCTGGACCCTTGTACCATTTGGGCTGTGGAATCCTGAGAAGCCCCTAGCCCATCAAGAAATCAGAGCCTGTTCCCAAGATGTGGAGCTGTCAGCTGGAACGGCTGGGTAGCTGCAGAGGTGCATGAACACCGGGCCTCCCACCCTCCCATCGGGTGACCCCACCATGCATCCTTGGCCCTGGGGAGGAAGCGTGGGAACATCCCCTGGAGCATGGCTGGAGGTGCTCCTGGAGGCCTCCTGGGCCAGGGTGCTGGGAGGGCAAGGCTGACTTTGAGGCCATGACAGAGGAC-GGGAGGAACTGGGTGGATGCTGGGTTTCGTGGTCGTCTCCTGGAAGTAGGGTCGGGCCAGGGGACATGGGAAGGGGAGATGCTGACATCTGGGCTTCATCGACCCATCTGTGGGCACCAAGGGCAGCTGGAGCCTGGCCAGCAGGAGGGCAGGAGGACTCTCAGGGAGGGGACAGTCAGCTGCACAGAATCAGAACCAGAGGATGTGACTCCAGGACACAGAGGGCAGCTGTGGGGGGATGAGATGCCCTCTGTTGATGGGGATAAAAAGTGTCTCACTTAGGGCCTGGGGGTACCCGTTTAGCCCCGGGGGTACCCATTCAGACCTGGGCTTCTGTGGGACCCTCAGCAGAGACATTCTAAAGGCTCCAGACAAGCTGGCGACACAGGAAGGTGCTTTCGCTGAAAGTGGAGATCACCTGGCCAGGGTGGCTGAGAAAAGTCAGCCCAAGACAGGATGGGTGCTGCCCAGGGTGGGTGGCCAGGCGCTGACAGGAGTCCCTCAGGGAGTGACTACATCACCCCACTGGGGTTTAGGGAGCCTGGCCTGAGACCTGTCTGGTGTTCCCAGGGTGCACCCAGGGCCCATCCCACCTGACGTTCCCAAGTCCTGCCAGGGTCTGACCTCCTG--------------------GCGTCCACCTGCCTCTCCCTGCACCCCAGTCACCCACTCTGCTTGTTCTCCGATTTCTACCATCCTGTCCAACCCAGAGACTGTGAATGTTTCTCCAGCCACCCTGGCCCTTCTTTGACCCTGGTCCTGTCAGAATCCCCGAGTGAGACTCCCCAGATCTGTTCACATG-CTGCCTTGTCTGCTTTCTCACTGGGTTACCGATGGCTGCTGGGGAGATGCCAA-GGTGACGTGGGTGACCAAGG--CCCATAGATGGCCAGGATGGCTTCCCAGCCCCACCTCCAGCCTCACCTGGCTCTATGGAGCCCTT--------------GGCTGTCAGCCCTCAGCCTCCTCCCAGACACTGCAGCAGCTGGGATTGGGGCGCCTGGCTGTCCTCCTCCACTATCCTGCCTGCCCCAAGAT-GTCTCCCCCATCACTT i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C a score=3057051.000000 s hg38.chr17_GL383564v2_alt 115869 790 + 133151 TCTGCACACCGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCACGCAGAGCCTTGGGGACTGACCGGCTCCCTCTGCTGGGACTCTGCTGACGAGTCCCAGGTGAGTTGGTG-TTTTTGGCTCCACCCCTTCTGTCATCCTCACCAGACCATCGGCTCCTTTGGGGTGCATTTCAGAAGTGGCACAGCCCATAAGCTCACTCCCACCCCACCTTCCCTGGGATCCTCTGTTTCTCTATCCTATGACCCCCGAGGGATCAGCTCCAGGCTGGGCTCCTACCTGGCCCCAGATTCCTTCCCAGCACCAGATCCAGGGCCTTTAGCCACAAGCTCTGCTGCTTCCCTGGTCTCACCGTGAGACGCCCAGAACATGGCCCTACCCATCTTCTCCCCCATTCCCCCAGGGCCACAGCCCTCATTCTCCCCATGCCCTTCCCCATGGGGAATGGGGAAGAAGAC-AGGCAGGTGGGCCCTCAGAGATCTGCCGGACAACTGCCCCCAGGCTGGGCCAAGCATCCCCTCACCCTGTGGCCACAACCCTTGGATCTCAGAAAGTGGACAGGGCCAGACCCTCAGGCTGCCCCCCTCCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCGCTCCCTAGATGAACCACGCTCCCTAGATGGGCCACGCACCTCTGGCCTAACAACGACCATGGGCTGGACCTGCAGGGGTGCCAGGGAGGAGTTCTGGCCCTGAAAAGGAGGTTGGCTGGAG s panTro5.chr17 16304984 790 + 83181570 TCTGCACACCGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCACGCAGAGCCTTGGGGACTGACCGGCTCCCTCTGCTGGGACTCTGCTGACGAGTCCCAGGTGAGTTGGTG-TTTTTGGCTCCACCCCTTCTGTCATCCTCACCAGACCATTGGCTCCTTTGGGGTGCATTTCAGAAGTGGCACAGCCCATAAGCTCACTCCCACCCCACCTCCCCTGGGATCCTCTGTTTCTCTATCCTATGACCCCCGAGGGATCAGCTCCAGGCTGGGCTCCTACCTGGCCCCAGATTCCTTCCCAGCACCAGATCCAGGGCCTTTAGCCACAAGCTCTGCTGCCTCCCTGGTCTCACCGTGAGACGCCCAGAACATGGCCCTACCCATCTTCTCCCCCATTCCCCCAGGGCCACAGCCCTCATTCTCCCCATGCCCTTCCCCATGGGGAATGGGGAAGAAGAC-AGGCAGGTGGGCCCTCAGAGACCTGCCGGACAACTGCCCCCAGGCTGGGCCAAGCATCCCCTCACCCTGTGGCCACAACCCTTGGATCTCAGAAAGTGGACAGGGCCAGACCCTCAGGCTGCCCCCCTCCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCGCTCCCTAGATGAGCCACGCTCCCTAGATGGGCCACGCACCTCTGGCCTAACAACGACCATGGGCTGGACCTGCAGGGGTGCCAGGGAGGAGTTCTGGCCCTGAAAAGGAGGTTGGCTGGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16209846 790 + 83442489 TCTGCACACCGTGCTGTCCAGGCCAACTGGAAGCAGAGTCTCTGGAAAGCCACGCAGAGCCTTGGGGACTGACCGGCTCCCTCTGCTGGGACTCTGCTGACGAGTCCCAGGTGAGTTGGTG-TTTTTGGCTCCACCCCTTCTGTCATCCTCACCAGACCATCGGCTCCTTTGGGGTGCATTTCAGAAGTGGCACAGCCCATAAGCTCACTCCCACCCCACCTCCCCTGGGATCCTCTGTTTCTCTATCCTATGACCCCCGAGGGATCAGCTCCAGGCTGGGCTCCTACCTGGCCCCAGATTCCTTCCCAGCACCAGATCCAGGGCCTTTAGCCACAAGCTCTGCTGCCTCCCTGGTCTCACCGTGAGATGCCCAGAACATGGCCCTACCCATCTTCTCCCCCATTCCCCCAGGGCCACAGCCCTCATTCTCCCCATGCCCTTCCCCATGGGGAATGGGGAAGAAGAC-AGGCAGGTGGGCCCTCAGAGACCTCCCGGACGACTGCCCCCAGGCTGGGCCAAGCATCCCCTCACCCTGTGGCCACAACCCTTGGATCTCAGAAAGTGGACAGGGCCAGACCCTCAGGCTGCCCCCCTCCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGACCTAGCCCTCTCTCCATTCCTACCCGCTCCCTAGATGAGCCACGCTCCCTAGATGGGCCACGCACCTCTGGCCTAATAACGACCATGGGCTGGACCTGCAGGGGTGCCAGGGAGGAGTTCTGGCCCTGAAAAGGAGGTTGGCTGGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4045007 789 + 4267968 TCTGCCCACCGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCACGCAGAGCCTTGGGGACTGACCGGCTCCCTCTGCTGGGACTCTGCTGACGAGTCCCAGGTGAGTTGGTGTTTTTTGGCTCCACCCCCTCTGTTATCCTCACCAGACCATCGGCTCCTTTGGGGTGCATTTCAGAAGTGGCACAGCCCATAAGCTCACTCCCACCCCACCTCCGCTGGGATCCTCTGTTTCTCTATCCTATGACCCCCGAGGGATCAGCTCCAGGCTGGGCTCCTACCTGGCCCCAGATTCCTTCCCAGCACCAGATCCAGGGCCTTTAGCCACAAGCTCTGCTGCCTCCCTGGTCTCACCGTGAGACACCCAGAACATGGCCCTGCCCATCTTCTCCCCCATTCCCCCAGGGCCACAGCCCTCATTCTCCCCATGCCCTTCCCCATGGGGAATGGGGAAGAAGAC-AGGCAGGTGGGCCCTCAGAGACCTGCCGGACAACTGCCCCCAGGCTGGGCCAAGCATCCCCTCACCCTGTGGCCACAACCCTTGGATCTCAGAAAGTGGACAGGGCCAGACCCTCAGGCTG-CCCCCTCCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCGCTCCCTAGATGAGCCACGCTCCCTAGATGGGCCACACACCTCTGGCCTAACAACGACCATGGGCTGGACCTGCA-GGGTGCCAGGGAGGAGTTCTGGCCCTGAAAAGGAGGTTGGCTGGAG i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30097881 776 - 77216781 TCTGCCCACTGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCATGCAGAGCCCTGGGGACTGGCCGGCTCCCTCTGCTGAG-----------GAGTCCCAGGTGAGTTGGTG-TGTTTGACCCCACCCCACCTGTTATCCTCACCAGACCATTGGCTACTTTGGGGTGCACTTCAGAAGTGGCACAGCGCATAAGCTCACTCCCACCCCATCTCCCCTGGGATCCTCTGTTTCTCCATCCTATGATCCCCGAGGGATCAGCTCCAGGCTGGGC-CCTACCTGGCCCCAGATCCCTTCCCAGCACCATACTCAGGGTCTTTAGCCATAAGCTCTGCTGCCTCCCTGGCCTCACCATGAGATGCCCAGAACATGGCCCTCCCCATCTTTTCCCCCATTCCCCCAGGGCCACAGCCCTCACTCTCCCCATGCCTTTCCCCATGGGGAATGGGAAAGAAGAA-GGGTAAGTGGGCCCTCAGAGACCTGCAGGACAACTGCACCCAGGCTGGGCCAGTCATCCCCTCACCCTGTGGCCACAACTCCTGGATGTTAGAAAGTGGACAGGGCCAGACCCTCAGGCTG-CCCCCTTCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGAACTAGCCCTCTCTCCATTCCCACCCACTCCCTAGATGAGCCACGTTCCCTAGATGGGCCACACACCTCTGGCCT-ACAATGACCATGGGCTGGACCTGCAGGGGAGCCAGGGAGGAGTTCTGGCCCTGAATAGGAGGTTGGCAGGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28010140 776 - 80997621 TCTGCCCACTGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCATGCAGAGCCCTGGGGACTGGCCGGCTCCCTCTGCTGAG-----------GAGTCCCAGGTGAGTTGGTG-TGTTTGACCCCACCCCACCTGTTATCCTCACCAGACCATTGGCTACTTTGGGGTGCACTTCAGAAGTGGCACAGCGCATAAGCTCACTCCCACCCCATCTCCCCTGGGATCCTCTGTTTCTCCATCCTATGATCCCCGAGGGATCAGCTCCAGGCTGGGC-CCTACCTGGCCCCAGATCCCTTCCCAGCACCATACTCAGGGTCTTTAGCCACAAGCTCTGCTGCCTCCCTGGCCTCACCATGAGATGCCCAGAACATGGCCCTCCCCATCTTTTCCCCCATTCCCCCAGGGCCACAGCCCTCACTCTCCCCATGCCTTTCCCCATGGGGAATGGGAAAGAAGAA-GGGTAAGTGGGCCCTCAGAGACCTGCAGGACAACTGCACCCAGGCTGGGCCAGTCATCCCCTCACCCTGTGGCCACAACTCCTGGATGTTAGAAAGTGGACAGGGCCAGACCCTCAGGCTG-CCCCCTTCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGAACTAGCCCTCTCTCCATTCCCACCCACTCCCTAGATGAGCCACGTTCCCTAGATGGGCCACACACCTCTGGCCT-ACAATGACCATGGGCTGGACCTGCAGGGGAGCCAGGGAGGAGTTCTGGCCCTGAATAGGAGGTTGGCAGGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2067843 776 + 10377808 TCTGCCCACTGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCATGCAGAGCCCTGGGGACTGGCCGGCTCCCTCTGCTGAG-----------GAGTCCCAGGTGAGTTGGTG-TGTTTGACCCCACCCCACCTGTTATCCTCACCAGACCATTGGCTACTTTGGGGTGCACTTCAGAAGTGGCACAGCGCATAAGCTCACTCCCACCCCATCTCCCCTGGGATCCTCTGTTTCTCCATCCTATGATCCCCGAGGGATCAGCTCCAGGCTGGGC-CCTACCTGGCCCCAGATCCCTTCCCAGCACCATACTCAGAGTCTTTAGCCACAAGCTCTGCTGCCTCCCTGGCCTCACCATGAGATGCCCAGAACATGGCCCTCCCCATCTTTTCCCCCATTCCCCCAGGGCCACAGCCCTCACTCTCCCCATGCCTTTCCCCATGGGGAATGGGAAAGAAGAA-GGGTAAGTGGGCCCTCAGAGACCTGCAGGACAACTGCACCCAGGCTGGGCCAGTCATCCCCTCACCCTGTGGCCACAACTCCTGGATGTTAGAAAGTGGACAGGGCCAGACCCTCAGGCTG-CCCCCTTCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCACTCCCTAGATGAGCCACGCTCCCTAGATGGGCCACACACCTCTGGCCT-ACAATGACCATGGGCTGGACCTGCAGGGGAGCCAGGGAGGAGTTCTGGCCCTGAATAGGAGGTTGGCAGGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1952748 776 - 8458610 TCTGCCCACTGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCATGCAGAGCCCTGGGGACTGGCCGGCTCCCTCTGCTGAG-----------GAGTCCCAGGTGAGTTGGTG-TGTTTGACCCTACCCCACCTGCTATCCTCACCAGACCATTGGCTACTTTGGGGTGCACTTCAGAAGTGGCACAGCGCATAAGCTCACTCCCACCCCACCTCCCCTGGGATCCTCTGTTTCTCCATCCTATGATCCCCGAGGGATCAGCTCCAGGCTGGGC-CCTACCTGGCCCCAGATCCCTTCCCAGCACCATACTCAGGGTCTTTAGCCACAAGCTCTGCTGCCTCCCTGGCCTCACCATGAGATGCCCAGAACATGGCCCTCCCCATCTTTTCCCCCATTCCCCCAGGGCCACAGCCCTCACTCTCCCCATGCCTCTCCCCATGGGGAATGGGAAAGAAGAT-GGGTAAGTGGGCCCTCAGAGACCTGCAGGACAACTGCACCCAGGCTGGGCCAGTCATCCCCTCACCCTGTGGCCACAATTCCTGGATGTTAGAAAGTGGACAGGGCCAGACCCTCAGGCTG-CCCCCTTCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCGAGGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCGCTCCCTAGATGAGCCACGCTCCCTAGATGGGCCACACACCTCTGGCCT-ACAATGACCATGGGCTGGACCTGCAGGGGAGCCAGGGAGGAGTTCTGGCCCTGAATAGGAGGTTGGCAGGAG i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2137775 776 + 4244037 TCTGCCCACTGTGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCATGCAGAGCCCTGGGGACTGGCCAGCTCCCTCTGCTGAG-----------GAGTCCCAGGTGAGTTGGTG-TGTTTGACCCCACCCCACCTGTTATCCTCACCAGACCATTGGCTACTTTGGGGTGCACTTCAGAAGTGGCACAGCGCATAAGCTCACTCCCACCCCACCTCCCCTGGGATCCTCTGTTTCTCCATCCTATGATCCCCGAGGGATCAGCTCCAGGCTGGGC-CCTACCTGGCCCCAGATCCCTTCCCAGCACTATACTCAGGGTCTTTAGCCACAAGCTCTGCTGCCTCCCTGGCCTCACCATGAGATGCCCAGAACATGGCCCTCCCCATCTTTTCCCCCATTCCCCCAGGGCCACAGCCCTCACTCTCCCCATGCCTCTCCCCATGGGGAATGGGAAAGAAGAT-GGGTAAGTGGGCCCTCAGAGACCTGCAGGACAACTGCACCCAGGCTGGGCCAGTCATCCCCTCACCCTGTGGCCACAACTCCTGGATGTTAGAAAGTGGACAGGGCCAGACCCTCAGGCTG-CCCCCTTCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAGGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCGCTCCCTAGATGAGCCACGCTCCCTAGATGGGCCACACACCTCTGGCCT-ACAATGACCATGGGCTGGACCTGCAGGGGAGCCAGGGAGGAGTTCTGGCCCTGAATAGGAGGTTGGCAGGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2160586 758 + 4569836 TCTGCCCACCATGCTGTCCAAGCCAACTGGAAGCAGAGTCTCTGGAAAGCCATGCAGAGCCTTGGGGATTGGCCGGCTCCCTCTGCTGAG-----------GAGTCCCAGGTGAGTTGGTG-TTTTTCACCCCACCCCACCTGTTATCCTCACCAGACCATTGGCTACTTTGGGGTGCACTTCAGAAGTGGCACAGCACATAAGCTCACTCCCACCCCACCTCCCCTGGGATCCTCTGTTTCTCCATCCTATGATCCCCAAGGGATCAGCTCCAGGCTGGGC-CCTCCCTGGCCCCAGATCCCTTCCCAGCACCATACTCAGGGTCTTTAGCCACAAGCTCTGCTGCCTCCCTAGCCTCAACATGAGATGCCCAGAACATGGCCCTCCCTATCTTTTCCCCCATTCCCCCAGGGCCACAGCCCTCACTCTCCCCATGCCTTTCCCCATGGGGAATGGGAAAGAAGATGGGGTAGGTGGGCCCTCAGAGACCTGCAGGACAACTGCACCCAGGCTGGGCCAGTCATCCCCTCACGCTGTGGCCACAACTCCTGGATGTCAGAAAGTGGACAGGGCCAGACCCTCAGGCTG--CCCCTTCTCTTGTGCTAACTTGGAGACAGAACTGCTGAGAGCCCAAGGGCCTGACCTAGCCCTCTCTCCATTCCCACCCGCTCCCTAGATGAGCCACG------------------CACCTCTGGCCT-ACAATGACCATGGGCTGGACCTGCAGGGGAGCCAGGGAGGAGTTCTGGCCCTGAATAGGAGGTTGGCAGGAG i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C e nomLeu3.chrUn_GL397460_1 2025499 591 - 2193130 M a score=2810873.000000 s hg38.chr17_GL383564v2_alt 116659 592 + 133151 CCAGGTAGACACATCTTGCCTCAGAAAGGCCTTTCTAAGGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAAGGGATGAGGACTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATGTCAGCATAGTGAGGCCCCATGTCCGCTGGCAGCCCAGCTGGGCATCCCTGCAACTCAGAGGGAGCCAGGGTGAGGGGTCCAAGATAAAGGGTGCATGTGTTGCTTCTCTGGCCAGATCCGGCTGCCCTACTCATGTGTGCAGCCAGTTCCTCATCACTCTCACTCCTGGGTCCCAGGGCCAGCATCAGAGCCTCTGTGGGTGCTCCCTAACTTCAGCCCTCCCCACCCAGCATGGT---------------GGAGTGGAGAGGCAAAAAGTTGAGGGTTGAAGGC-AGAGGACAGAGGGCAGTGAATGGTTAACGCCTGAGCCACAGCTGAGCCTtcctctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcattgaacctgggccttcttcttcccctgagctgtctgccgctctcccctgctcac-----accagaccagaccaga s panTro5.chr17 16305774 592 + 83181570 CCAGGTAGACACATCTTGCCTCAGAAAGGCCTTTCTAAGCGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAAGGGATGAGGACTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATGTCAGCATACTCAGGCCCCATGTCCGCTGGCAGTCCAGCTCGCCATCCCTGCAACTCAGAGGGAGCCAGGGTGAGGGGTCCAAGATAAAGGGTGCATGTGTTGCTTCTCTGGCCAGATCCGGCTGCCCTACTCATGTGTGCAGCCAGTTCCTCATCACTCTCACTCCTGGGTCCCAGGGCCAGCATCAGAGCCTCTGTGGGTGCTCCCTAACTTCAGCCCTCCCCACCCAGCATGGT---------------GGAGTGGAGAGGCAAAAAGTTGAGGGTTGAAGGC-AGAGGACAGAGGGCAGTGAATGGTTAACGCCTGAGCCACAGCTGAGCCTtcctctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcattgaacctgggccttcttcttcccctgagctgtctgccgctctcccctgctcac-----accagaccagaccaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16210636 592 + 83442489 CCAGGTAGACACATCTTGCCTCAGAAAGGCCTTTCTAAGGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAAGGGATGAGGACTCACTGCAGAATCTCAAGGCGATCAGTGCCTTTGTAGATGTCAGCATACTCAGGCCCCATGTCCGTTGGCAGCCCAGCTCGGCATCCCTGCAACTCAGAGGGAGCCAGGGTGAAGGGTCCAAGATAAAGGGTGCATGTGTTGCTTCTCTGGCCAGATCCGGCTGCCCTACTCATGTGTGCAGCCAGTTCCTCATCACTCTCACTCCTGGGTCCCAGGGCCAGCATCAGAGCCTCTGTGGGTGCTCCCTAACTTCAGCCCTCCCCACCCAGCATGGT---------------GGGGTGGAGAGGCAAAAAGTTGAGGGTTGAAGGC-AGAGGACAGAGGGCAGTGAATGGTTAACGCCTGAGCCACAGCTGAGCCTtcctctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcattgaacctgggccttcttcttcccctgagctgtctgccgctctcccctgctcac-----accagaccagaccaga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4045796 592 + 4267968 CCAGGTAGACACATCTTGCCTCAGAAAGGCCTTTCTAAGGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAAGGGATGAGGACTCACTGCAGAATACCAAGGCGATCAGTGCCTTTGTAGATGTCAGCATACTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCGGCATCCCTGCAACTCAGAGGGAGCCAGGGTGAGGGGTCCAAGATAAAGGGTGCATGTGTTGCTTCTCTGGCCAGATCTGGCTGCCCTACTCATGTGTGCAGCGAGTTCCTCATCACTCTCACCCCTGGGTCCCAGGGCCAGCATCAGAGCCTCTGTGGGTGCTCCCTAACTTCAGCCCTCCCCACCCAGCATGGT---------------GGAGTGGAGAGGCAAAAAGTTGAGGGTTGAAGGC-AGAGGACAGAGGGCAGTGAATGGTTAACGCCTGAGCCACAGCTGAGCCTtcctctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcattgaacctgggccttcttcttcccctgagctgtctgctgctctcccctgctcac-----accagaccagaccaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026090 596 - 2193130 CCAGGTAGACACATCTTG-CTCAGAAAGGCCTTTCAAAGGGCAAAACCCATCCTTGAGCTGAGACTGGTGCTTTAGGGGGTGAGGATTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATGTCAGCATACTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCAGCATCCCTGCAACTCAGAGGGAGCCAGGGTGAGGAGTCCAAGGTAAAGGGTGCATGTGTCGCTTCTCTGGCCAGATCCGGCTGCCCTACTCATGTGTGCAGCCAGTTCCTCATCACTCTCACCCCTGGGTCCCAGGGCCAGCATCAGAGCATCTGTGGGTGCTCCGTAACTTCAGCCCTCCCCGCCCAGCATggt---------------ggagtggagaggcaaaaagttgagggttgaaggc-agaggacagagggcagtgggtGGTTAACACCTGAGCCACAGCTGAGCCTtcctctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggtctcaggtcattgaacctgggccttcttcttcccctgagctgtctgccgctctcccctgctcacaccagaccagaccagaccaga i nomLeu3.chrUn_GL397460_1 M 591 C 0 s rheMac8.chr16 30098657 600 - 77216781 CCAGGGAAACACATCCTGCCTCAGAAAGGCCTTTCTAAAGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAGGGGGTGAGGACTCACTGCAGAATACCAAGGCGATCAGTGCCTTTGTAGATATCAGCATGCTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCGGCATCCCTGCAACCCAGAGGGAGCCAGGGTGAGGAGTCCAAGGTAAAGGGTGCATGTGTTGCTTCTCTGGCCAAGTCTGGCTGCCCCACTCATGTGTGCACCCAGTTCCTCATCACTCTCACCCCTGGGGCCCAGGGCCAGCATCAGAGCATCTACGGGTGCTCCCTAACTTCAACCCTCCCCACCCAGCATGGTCCTGGGATACACATAGGAGTGGAGGCACAAAAAGTTGAGGATGGAAGGCAAGAGGACAGAGAGCAGTGGGTGGttaacacctgagccacagctgagccttctcctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcgttgaacctgggccgccttcttcccctgagctgtct---gctctcccctgctcac-----acctggccaga----- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28010916 600 - 80997621 CCAGGGAAACACATCCTGCCTCAGAAAGGCCTTTCTAAAGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAGGGGGTGAGGACTCACTGCAGAATACCAAGGCGATCAGTGCCTTTGTAGATATCAGCATGCTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCGGCATCCCTGCAACCCAGAGGGAGCCAGGGTGAGGAGTCCAAGGTAAAGGGTGCATGTGTTGCTTCTCTGGCCAAGTCTGGCTGCCCCACTCATGTGTGCACCCAGTTCCTCATCACTCTCACCCCTGGGGCCCAGGGCCAGCATCAGAGCATCTACGGGTGCTCCCTAACTTCAACCCTCCCCACCCAGCATGGTCCTGGGATACACATAGGAGTGGAGGCACAAAAAGTTGAGGATGGAAGGCAAGAGGACAGAGAGCAGTGGGTGGttaacacctgagccacagctgagccttctcctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcgttgaacctgggccgccttcttcccctgagctgtct---gctctcccctgctcac-----acctggccaga----- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2068619 600 + 10377808 CCAGGGAAACACATCCTGCCTCAGAAAGGCCTTTCTAAAGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAGGGGGTGAGGACTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATATCAGCATGCTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCGGCATCCCTGCAACCCAGAGGGAGCCAGGGTGAGGAGTCCAAGGTAAAGGGTGCATGTGTTGCTTCTCTGGCCAAGTCTGGCTGCCCCACTCATGTGTGCACCCAGTTCCTCATCACTCTCACCCCTGGGGCCCAGGGCCAGCATCAGAGCATCTACGGGTGCTCCCTAACTTCAACCCTCCCCACCCAGCATGGTCCTGGGATACACATAGGAGTGGAGGCACAAAAAGTTGAGGATTGAAGGCAAGAGGACAGAGGGCAGTGGGTGGttaacacctgagccacagctgagccttctcctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcgttgaacctgggccgccttcttcccctgagctgtct---gctctcccctgctcac-----acctggccaga----- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1953524 602 - 8458610 CCAGGGAAACACATCCTGCCTCAGAAAGGCCTTTCTAAAGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAGGGGGTGAGGACTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATATCAGCATGCTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCGGCATCCCTGCAACCCAGAGGGAGCCAGGGTGAGGAGTCCAAGGTAAAGGGTGCATGTGTTGCTTCTCTGGCCAGGTCTGGCTGCCCCACTCATGTGTACACCCAGTTCCTCATCACTCTCACCCCTGGGGCCCAGGGCCAGCATCAGAGCATCTACGGGTGCTCCTTAACTTCAACCCTTCCCACCCAGCATGGTCCTGGGATACACATAGGAGT-GAGGCACAAAAAGTTGAGGATTGAAGGCAAGAGGACAGACGGCAGTGGGTGGttaacacctgagccacagctgagccttcttctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcgttgaacctgggccttcttcttcccctgagcggtctgccgctctcccctgctcac-----accaggccaga----- i cerAty1.NW_012006043v1 C 0 C 0 s manLeu1.NW_012106252v1 2138551 602 + 4244037 CCAGGGAAACACATCCTGCCTCAGAAAGGCCTTTCTAAAGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAGGGGGTGAGGACTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATATCAGCATGCTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCAGCATCCCTGCAACCCAGAGGGAGCCAGGGTGAGGAGTCCAAGGTAAAGGGTGCATGTGTTGCTTCTCTGGCCAGGTCTGGCTGCCCCACTCATGTGTGCACCCAGTTCCTCATCACTCTCACCCCTGGGGCCCAGGGCCAGCATCAGAGCATCTACGGGTGCTCCCTAACTTCAACCCTCCCCACCCAGCATGGTCCTGGGATACACATAGGAGT-GAGGCACAAAAAGTTGAGGATTGAAGGCAAGAGGACAGACGGCAGTGGGTGGttaacacctgagccacagctgagccttcttctacccaggaccctctgctggctctccatctcctctgagtgacagctagagccttgcaacggcctcaggtcgttgaacctgggccttcttcttcccctgagcggtctgccgctctcccctgctcac-----accaggccaga----- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2161344 603 + 4569836 CCAGGGAAACACATCCTGCTTCAGAAAGGCCTTTCTAAAGGCAAAACCCATCCCTGAGCTGAGATTGGTGCTTTAGGGGGTGAGGACTCACTGCAGAATCCCAAGGCGATCAGTGCCTTTGTAGATATCAGCATGCTCAGGCCCCATGTCCGCTGGCAGCCCAGCTCGGCATCTCTGCAACCCAGAGGGAGCCAGGGTGAGGATTCCAAGGTAAAGGGTGCATGTGTTGTTTCTCTGGCCAGGTCTGGCTACCCCACTCATGTGTGCACCCAGTTCCTCATCATTCTCACCCCTGGGGCCCAGGGCCAGTATCAGAGCATCTACGGGTGCTCCCTAACTTCAACCCTCTCCACCCAGCATGGTCCTGGGATGCACATAGGAGTGGAGGCACAAAAAATTGAGGATTGAAGGCAAGAGGACAGAGGGCAGTGGGTGGttaacacctgagccacagctgagccttctcctacccaggaccctctgctggctctccatctcctcggagtgacatctagagccttgcaacggcctcaggtcgttgaacctgggccttcttattcccctgaggggtctgccgctctcccctgctcac-----accaggccaga----- i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I e chlSab2.chr16 64899697 0 + 75148670 C a score=250943.000000 s hg38.chr17_GL383564v2_alt 117251 41 + 133151 tgcagacttcccctctgggcctcaagcatgccaatcacgct s panTro5.chr17 16306366 41 + 83181570 tgcagacttcccctctgggcctcaagcatgccaatcacgct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211228 41 + 83442489 tgcagacttcccctctgggcctcaagcatgccaatcacgct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046388 41 + 4267968 tgcagacttcccctctgggcctcaagcatgccaatcacgct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026686 41 - 2193130 tgcagacttcacctctgggcctcaagcatgccaatcatgct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099257 41 - 77216781 tgcagacttcccctctgggcctcaagcatgccaatcatgct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011516 41 - 80997621 tgcagacttcccctctgggcctcaagcatgccaatcatgct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069219 41 + 10377808 tgcagacttcccctctgggcctcaagcatgccaatcatgct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954126 41 - 8458610 tgcagacttcccctctgggcctcaagcatgccaatcatgct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899697 41 + 75148670 tgcagacttcccctctgggcctcaagcatgccaatcacgct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139153 41 + 4244037 tgcagacttcccctctgggcctcaagcatgccaatcatgct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2161947 41 + 4569836 tgcagacttcccctctgggcctcaagcatgacaatcacgct i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22075575 1614 - 122082543 I e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=42926.000000 s hg38.chr17_GL383564v2_alt 117292 7 + 133151 cctgcct s panTro5.chr17 16306407 7 + 83181570 cctgcct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211269 7 + 83442489 cctgcct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046429 7 + 4267968 cctgcct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026727 7 - 2193130 cctgcct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099298 7 - 77216781 cctgcct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011557 7 - 80997621 cctgcct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069260 7 + 10377808 cctgcct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954167 7 - 8458610 cctgcct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899738 7 + 75148670 cctgcct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139194 7 + 4244037 cctgcct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2161988 6 + 4569836 cc-acct i colAng1.NW_012122154v1 C 0 C 0 s mm10.chr11 22077189 7 - 122082543 CCTTCCT i mm10.chr11 I 1614 C 0 e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e dasNov3.JH570468 413482 9355 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=58980.000000 s hg38.chr17_GL383564v2_alt 117299 10 + 133151 cagggccttt s panTro5.chr17 16306414 10 + 83181570 cagggccttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211276 10 + 83442489 caggaccttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046436 10 + 4267968 cagggccttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026734 10 - 2193130 cagggccttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099305 10 - 77216781 cagggccttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011564 10 - 80997621 cagggccttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069267 10 + 10377808 cagggccttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954174 10 - 8458610 cagggccttt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899745 10 + 75148670 cagggccttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139201 10 + 4244037 cagggccttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2161994 10 + 4569836 cagggccttt i colAng1.NW_012122154v1 C 0 C 0 s mm10.chr11 22077196 6 - 122082543 TAAGAC---- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 422837 9 - 852752 CAGGGATTT- i dasNov3.JH570468 I 9355 C 0 e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816198 223 + 28711273 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=28137.000000 s hg38.chr17_GL383564v2_alt 117309 4 + 133151 gcaa s panTro5.chr17 16306424 4 + 83181570 gcaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211286 4 + 83442489 gcaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046446 4 + 4267968 gcaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026744 4 - 2193130 gcga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099315 4 - 77216781 gcaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011574 4 - 80997621 gcaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069277 4 + 10377808 gcaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954184 4 - 8458610 gcaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899755 4 + 75148670 gcaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139211 4 + 4244037 gcaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162004 4 + 4569836 gcaa i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22816421 4 + 28711273 GCAA i otoGar3.GL873537 I 223 C 0 s mm10.chr11 22077202 1 - 122082543 ---A i mm10.chr11 C 0 C 0 s dasNov3.JH570468 422846 2 - 852752 --GA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 2999295 2980 + 8555354 I e micMur3.chr16 35911665 4144 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=1375352.000000 s hg38.chr17_GL383564v2_alt 117313 170 + 133151 ttttctgtggttctctca-gaaagccagacatagaggagggaagatgggcttcag-----aaacagacagatctgggttcaaatccaagctctgcattgtctgggtaaagtaattgatcaccatgagctccagtttcttcatgcacaaaataaggatattaatac---ttgtgttgagc s panTro5.chr17 16306428 170 + 83181570 ttttctgtggttctctca-gaaagccagacatagaggagggaagatgggcttcag-----aaacagacagatctgggttcaaatccaagctctgcattgtctgggtaaagtaattgatcaccatgagctccagtttcttcatgtacaaaataaggatattaatac---ttgtgttgagc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211290 170 + 83442489 ttttctgtggttctctca-gaaagccagacatagaggagggaagatgggcttcag-----aaacagacagatctgggttcaaatccaagctctgcattgtctgggtaaagtaattgatcaccatgagctccagtttcttcatgtacaaaataaggatattaatac---ttgtgttgagc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046450 170 + 4267968 ttttctgtggttctctca-gaaagccagacatagaggagggaagacgagcttcag-----aaacagacagatctgggttcaaatccaagctctgcattgtctgggtaaagtaactgatcaccatgagctccagtttcttcatgtacaaaataaggatattaatac---ttgtgttgagc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026748 170 - 2193130 ttttctgtgtttctctCA-GAAAGCCAGACAcagaggagggaagatgggcttcag-----aaacagacagatctgggttcaaatccaagctctccatcatctgggtaaagtaattgatcaccatgagctccagtttcttcatgtacaaaataaggatagtaatac---ttgtgttgagc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099319 170 - 77216781 tgttctgtggttctctca-gaaagccagacatagaggaaggaagatgggcttcag-----aaacagacagatctgtgttcaaatccaagctctgcatcgtctgggtaaagtaattgaccaccgtgagctccagtttcttcatgtacaaaataaggataataatac---ttgtgttgagc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011578 170 - 80997621 tgttctgtggttctctcA-GAAAGCCAGACATagaggaaggaagatgggcttcag-----aaacagacagatctgtgttcaaatccaagctctgcatcgtctgggtaaagtaattgaccaccgtgagctccagtttcttcatgtacaaaataaggataataatac---ttgtgttgagc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069281 170 + 10377808 tgttctgtggttctctca-gaaagccagacatagaggaaggaagatgggcttcag-----aaacagacagatctgtgttcaaatccaagctctgcatcgtctgggtaaagtaatcgaccaccgtgagctccggtttcttcatgtacaaaataaggataataatac---ttgtgttgagc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954188 170 - 8458610 tgttctgtggttctctcA-GAAAGCTAGACATagaggaaggaagatgggcttcag-----aaacagacagatctgtgttcaaatccaagctctgcatcgtctgggtaaagtaattgaccaccatgagctccagtttcttcatgtacaaaataaggataataatac---ttgtgttgagc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899759 170 + 75148670 ttttctgtggttctctcA-GAAAGCCAGACAcagaggaaggaggatgggcttcag-----aaaccgacagatctgtgttcaaatccaagctctgcatcgtctgggtaaagtaattgaccaccatgagctccagtttcttcatgtacaaagtaaggataataatac---ttgtgttgagc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139215 170 + 4244037 tgttctgtggttctctcA-GAAAGCTAGACATagaggaaggaagatgggcttcag-----aaacagacagatctgtgttcaaatccaagctctgcatcgtctgggtaaagtaattgaccaccatgagctccagtttcttcatgtacaaaataaggataataatgc---ttgtgttgagc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162008 170 + 4569836 ttttctgtGGTTCTTTCA-GAAAGCCGGACATagaggaaggaagatgggctttag-----aaacagacagatctgtgttcaaatccaagctctgcatcatctgggtaaagtaattgaccaccatgagctccagtttcttcatgtacaaaataaggataataatac---ttgtgttgagc i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 3002275 174 + 8555354 TTTTCTGTGATTCCCTCaggagagccaggcataaaggacggagggtgggcttcag-----aagcagacagatctgggttcaaatccaagctctgcatcttctagttaaagtaaatgatgtccatgagcttcggtgtcctcatgtacaaaatagggatgctaatacttcttgtatttggt i proCoq1.NW_012135969v1 I 2980 C 0 s otoGar3.GL873537 22816425 169 + 28711273 TTTTCTGTGATTCCATTAggaaagccaggtataggggaaggaggatgggattcaa-----aaggagatgggtcagggttcaaat-caagctctgcatcttctggttaaagtaattgatgtccatgatgttcagtttctttgagtaccaagtaaggatactaatac----tgtatttgat i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077203 151 - 122082543 ATTTCTGTAGT--------TAAGggaagaatgtgagaaaggaggatga-cttcag-----gagcaggcagacatggactccagtccaagctttgtatcttctagttaaagaatttgatctccgagagccttagtttacttatatacaaaatgag--------------atggCCTGAGG i mm10.chr11 C 0 I 1 s dasNov3.JH570468 422848 163 - 852752 TTTTTTGTGGTTTCATCAAGAAAGCCTGACAGACAAGATCAagcatgggcttcagcctcagagcagacacatctggcttcaaatccagtatctccaattttctagttaaataattaacttccctgaacctcagtttcctcatgtacaaaataaggataataat---------------- i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35911665 4144 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=529997.000000 s hg38.chr17_GL383564v2_alt 117483 63 + 133151 tatcttgagcattaaccaagaaaacacgtataaagtgctcacagcagggcctggcaTGAGGGA s panTro5.chr17 16306598 63 + 83181570 tatcttgagcattaaccaagaaaacacgtataaagtgctcacagcagggcctggcaTGAGGGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211460 63 + 83442489 tatcttgagcattaaccaagaaaacacgtataaagtgctcacagcagggcctggcaTGAGGGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046620 63 + 4267968 tatcttgagcattaaccaagaaaacacgtataaagtgctcacagcagggcctggcaTGTGGGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026918 63 - 2193130 tatcttgagcattaaccaagaaaacacgtacaaagtgctcacagcagggcctgacaTGTGGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099489 63 - 77216781 tatcttgagcattaaccaagaaaacacctataaagggctcacagcagggcctggcaTGTGGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011748 63 - 80997621 tatcttgagcattaaccaagaaaacacctataaagggctcacagcagggcctggcaTGTGGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069451 63 + 10377808 tatcttgagcattaaccaagaaaacacctataaagtgctcacagcagggcccggcaTGTGGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954358 63 - 8458610 tatcttgagcattaaccaagaaaacacctataaagtgctcacagcagggcccggcaTGTGAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899929 63 + 75148670 tatcttgagcattaaccaagaaaacacctataaagtgctcacagcagggcctggcaTGTGAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139385 63 + 4244037 tatcttgagcattaaccaagaaaacacctataaagtgctcgcagcagggcccggcaTGTGAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162178 63 + 4569836 tatcttgagtattaaccaagaaaacacctataaagtgctcacagcagcgcccagcaTTTGGAA i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35915809 63 - 65901067 tatcttgagcattaactgagaaaacacatataaaatgcctgctgcggggcctggcacacggGT i micMur3.chr16 I 4144 C 0 s proCoq1.NW_012135969v1 3002449 63 + 8555354 tatcttgagcattaaccaataaaacacatataaaaagcctgctgcagggcctggcacatggGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22816594 62 + 28711273 tatctctattgttaatcaagaaaacac-tacaaaatgcctactgcagggcctggcacatggGA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077355 35 - 122082543 GGCCTTGTG--------------------ATTGAATGCTT--------GCCTAGCATGAGGGA i mm10.chr11 I 1 I 76 s dasNov3.JH570468 423011 60 - 852752 ---ctcatgcattaactgagaaaccatatagaaagagcttagtgcagtaactggaacTCGAGA i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=876344.000000 s hg38.chr17_GL383564v2_alt 117546 106 + 133151 GGGACTGA-TAATGTGTCTCCTTTGCTAAGAGATCGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG s panTro5.chr17 16306661 105 + 83181570 GGGAC-GG-TAATGTGCCTCCTTTGCTAAGAGATCGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211523 105 + 83442489 GGGAC-GG-TAATGTGCCTCCTTTGCTAAGAGATCGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046683 106 + 4267968 GGGACTGG-TAATGTGCCTCCTTTGCTAAGAGATCGTTAATTGGATGCATGGTTTAAATTAGTTCTATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2026981 106 - 2193130 GGGACTGG-TAATGTGCCTCCTTTGCTAAGAGATCGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099552 107 - 77216781 GGGACTGGTTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011811 107 - 80997621 GGGACTGGTTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069514 107 + 10377808 GGGACTGGTTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954421 107 - 8458610 GGGACTGGTTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTGGATGCATAGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64899992 107 + 75148670 GGGACTGGTTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTGGATGCATGGTTTAAATTAGTTCCTTGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139448 107 + 4244037 GGGACTGGTTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTGGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162241 107 + 4569836 GGGACTGATTAAGGTGCCCCCTTTGCCAAAAGATGGTTAATTAGATGCATGGTTTAAATTAGTTCCATGTAAATATAATAAGCTTCTCTCATCAAACCAAATTTTTG i colAng1.NW_012122154v1 C 0 C 0 s micMur3.chr16 35915872 105 - 65901067 GGTACTGA-TAATGTACCTCCTTTGCCAAAAGATGGCTAA-TGAACAAACGATTTAAATCAGTTCCACATAAATATAATGAGCTGCTCCCATCAAACCGAGTTTTTG i micMur3.chr16 C 0 I 61 s proCoq1.NW_012135969v1 3002512 105 + 8555354 GGGACTGA-TAATGTGCCTCCTTTGCCAAGAGATGTCTAA-TGAACACACTATTTAAATCAGTTCCACGTAAACATGATAAGCTGCTCGCATCAAACCGAGTTTTTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22816656 106 + 28711273 TGGATTGA-TAATGTGGCTCCTTTGCCAAGAGATCGCTAACTGAGCACATGATTTATATCAATTTCATGTAAATATAATAAACTTCTCACATCACGCCAAGGTATTG i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 423071 78 - 852752 GGAGATGA-TAATGTTCTCCCTTTGCCAAGAGACGGTGAATTGGACACATGATTTAAATCA----------------------------TATCAAATTAAGTTTTTG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22077390 76 - 122082543 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=57245.000000 s hg38.chr17_GL383564v2_alt 117652 10 + 133151 TTGAGTTGCT s panTro5.chr17 16306766 10 + 83181570 TTGACTTGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211628 10 + 83442489 TTGACTTGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046789 10 + 4267968 TTGAGTTGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027087 10 - 2193130 TTGAGTTGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099659 10 - 77216781 TTCAGTTGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011918 10 - 80997621 TTGAGTTGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069621 10 + 10377808 TTGAGTTGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954528 10 - 8458610 TTGAGTTGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900099 10 + 75148670 TTCAGTTGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139555 10 + 4244037 TTCAGTTGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162348 10 + 4569836 TTGAGTTGCT i colAng1.NW_012122154v1 C 0 C 0 s proCoq1.NW_012135969v1 3002617 10 + 8555354 TGGAGCTGCT i proCoq1.NW_012135969v1 C 0 I 2790 s otoGar3.GL873537 22816762 10 + 28711273 TGAAGTTGCT i otoGar3.GL873537 C 0 I 4 s dasNov3.JH570468 423149 2 - 852752 -----TC--- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22077390 76 - 122082543 I e micMur3.chr16 35915977 61 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=37921.000000 s hg38.chr17_GL383564v2_alt 117662 5 + 133151 TCTGG s panTro5.chr17 16306776 5 + 83181570 TCTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211638 5 + 83442489 TCTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046799 5 + 4267968 TCTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027097 5 - 2193130 TCTGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099669 5 - 77216781 TCTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011928 5 - 80997621 TCTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069631 5 + 10377808 TCTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954538 5 - 8458610 TCTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900109 5 + 75148670 TCTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139565 5 + 4244037 TCTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162358 5 + 4569836 TCTGG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22816776 5 + 28711273 TCCTG i otoGar3.GL873537 I 4 C 0 s dasNov3.JH570468 423151 4 - 852752 -CTGG i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22077390 76 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35915977 61 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=124732.000000 s hg38.chr17_GL383564v2_alt 117667 17 + 133151 TGAAT-CTAG---TGTCAGAG s panTro5.chr17 16306781 17 + 83181570 TGAAT-CTAG---TGTCAGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211643 17 + 83442489 TGAAT-CTAG---TGTCAGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046804 17 + 4267968 TGAAT-CTAG---TGTCAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027102 17 - 2193130 TGAAT-CTAG---TGTCAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099674 17 - 77216781 TGAAT-CTAG---TGTCAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011933 17 - 80997621 TGAAT-CTAG---TGTCAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069636 17 + 10377808 TGAAT-CTAG---TGTCAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954543 17 - 8458610 TGAAT-CTAG---TGTCAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900114 17 + 75148670 TGAAT-CTAG---TGTCAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139570 17 + 4244037 TGAAT-CTAG---TGTCAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162363 17 + 4569836 TGAAT-ATAG---TGTCAGAG i colAng1.NW_012122154v1 C 0 C 0 s otoGar3.GL873537 22816781 17 + 28711273 TGAAG-CCAG---CATCAGAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077466 18 - 122082543 TGAACACCAG---AGGCAACG i mm10.chr11 I 76 C 0 s dasNov3.JH570468 423155 20 - 852752 TGAGG-CCAGTATTATCAGAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35915977 61 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I e saiBol1.JH378271 1828969 1 + 3513951 I e calJac3.chr5 46118597 1 - 159171411 I a score=35576.000000 s hg38.chr17_GL383564v2_alt 117684 3 + 133151 CCT s panTro5.chr17 16306798 3 + 83181570 CCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211660 3 + 83442489 CCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046821 3 + 4267968 CCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027119 3 - 2193130 CCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099691 3 - 77216781 CCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011950 3 - 80997621 CCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069653 3 + 10377808 CCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954560 3 - 8458610 CCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900131 3 + 75148670 CCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139587 3 + 4244037 CCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162380 3 + 4569836 CCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118598 2 - 159171411 -CT i calJac3.chr5 I 1 I 1 s saiBol1.JH378271 1828970 2 + 3513951 -CT i saiBol1.JH378271 I 1 I 1 s otoGar3.GL873537 22816798 3 + 28711273 CCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077484 3 - 122082543 CCT i mm10.chr11 C 0 C 0 s dasNov3.JH570468 423175 3 - 852752 CCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35915977 61 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e aotNan1.NW_018502359v1 6994067 3 - 7032639 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I a score=11099.000000 s hg38.chr17_GL383564v2_alt 117687 1 + 133151 G s panTro5.chr17 16306801 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211663 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046824 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027122 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099694 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011953 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069656 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954563 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900134 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139590 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162383 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118601 1 - 159171411 G i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1828973 1 + 3513951 G i saiBol1.JH378271 I 1 C 0 s aotNan1.NW_018502359v1 6994070 1 - 7032639 G i aotNan1.NW_018502359v1 I 3 C 0 s otoGar3.GL873537 22816801 1 + 28711273 G i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077487 1 - 122082543 A i mm10.chr11 C 0 C 0 s dasNov3.JH570468 423178 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35915977 61 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e cebCap1.NW_016107730v1 1877286 4 + 1920343 I a score=586870.000000 s hg38.chr17_GL383564v2_alt 117688 51 + 133151 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAT s panTro5.chr17 16306802 51 + 83181570 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211664 51 + 83442489 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046825 51 + 4267968 TCTTATGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027123 51 - 2193130 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTGGAAGCTGCTTGTGTAATATCAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099695 51 - 77216781 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28011954 51 - 80997621 TCTTGTGAGTGCTTCTAAAGGAAAT---ACTAGAAGCTGCTTGTGTAATATCAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069657 51 + 10377808 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954564 51 - 8458610 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900135 51 + 75148670 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139591 51 + 4244037 TCTTGTGAGTGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGAGTAATATCAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162384 51 + 4569836 TCTTGTGAGCGCTTCTAAAGGAAAC---ACTAGAAGCTGCTTGTGTAATATCAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118602 51 - 159171411 TCTTGTGAGTGCTTCTGAAAGAGAC---ACTGGAAGCTACTTGTGTAACATCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1828974 51 + 3513951 TCTTGTGAGCGCTTCTAAAAGAAAT---ACCAGAAGCTGCTTGTGTAATATCAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877290 51 + 1920343 TCTTGTGAGTGCTTCTAAAAGAAAT---ACTAGCAGCTGCTTGTGTAATATCAT i cebCap1.NW_016107730v1 I 4 C 0 s aotNan1.NW_018502359v1 6994071 51 - 7032639 TCTTGTGAGTGCTTCTAAAAGGAAT---ACTAGAAGCTGCTTGTGTAATATCAC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22816802 36 + 28711273 TCTTGTGAGCGCT------------------GGAAGCTGCATGTGTAATGTCAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077488 52 - 122082543 -CCTATAAAT-TGCCCAGAGCAGTCTGGGCCGGATGCTGTGTATGCAATGTCAG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 423179 47 - 852752 TCTTTTG----CCATGAAAACAAAC---ACCAGAAGCTTCATTTGTAATGTCAT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35915977 61 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I a score=453018.000000 s hg38.chr17_GL383564v2_alt 117739 29 + 133151 GAGATGAACACTAGAGGCTGCCAGAACAG s panTro5.chr17 16306853 29 + 83181570 GAGATGAACACTAGAGGCTGCCAGAACAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211715 29 + 83442489 GAGATGAACACTAGAGGCTGCCAGAACAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046876 29 + 4267968 GAGATGAACACTAGAGGCTGCCAGAACAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027174 29 - 2193130 GAGATGAACACTAGAGGCCGCCAGAACAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099746 29 - 77216781 GAGAGGAACACTAGAGGCCACCAGAACAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012005 29 - 80997621 GAGAGGAACACTAGAGGCCACCAGAACAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069708 29 + 10377808 GAGAGGAACACTAGAGGCCACCAGAACAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954615 29 - 8458610 GAGACGAACACTAGAGGCCACCAGAACAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900186 29 + 75148670 GAGAGGAACACTAGAGGCCACCAGAACAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139642 29 + 4244037 GAGACGAACACTAGAGGCCACCAGAACAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162435 29 + 4569836 GAGAGGAACACTAGAGGCCACCAGAACAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118653 29 - 159171411 AAGATGAACACTAGAGGCCACCAGAACAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1829025 29 + 3513951 GAGATGAACACTAGAGGCCACCAGAACAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877341 29 + 1920343 GAGATGAACGCTAGAGGCCACCAGAACAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994122 29 - 7032639 GAGATGAACACTAGAGGCCACCAGAACAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35916038 29 - 65901067 GAGAGGAACACTAGAGGCCGCCAGAACAG i micMur3.chr16 I 61 I 2667 s otoGar3.GL873537 22816838 29 + 28711273 GAGTGGAACACTAGAGGCCGCCAGAACAG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22077540 29 - 122082543 TAGACGAACACTAGAGGCCGCCAGAATAG i mm10.chr11 C 0 C 0 s dasNov3.JH570468 423226 29 - 852752 CTGCTGAACACTAGAGGTCGCCAGAATAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e canFam3.chr9 21428401 10173 + 61074082 I a score=5844.000000 s hg38.chr17_GL383564v2_alt 117768 2 + 133151 AC- s panTro5.chr17 16306882 2 + 83181570 AC- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211744 2 + 83442489 AC- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046905 2 + 4267968 AC- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027203 2 - 2193130 AC- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099775 2 - 77216781 AT- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012034 2 - 80997621 AT- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069737 2 + 10377808 AT- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954644 2 - 8458610 AT- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900215 2 + 75148670 AC- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139671 2 + 4244037 AT- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162464 2 + 4569836 AT- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118682 2 - 159171411 AT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1829054 2 + 3513951 AT- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877370 2 + 1920343 AT- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994151 2 - 7032639 AT- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22816867 2 + 28711273 GC- i otoGar3.GL873537 C 0 I 27 s mm10.chr11 22077569 2 - 122082543 AG- i mm10.chr11 C 0 C 0 s dasNov3.JH570468 423255 2 - 852752 -CC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I a score=500780.000000 s hg38.chr17_GL383564v2_alt 117770 65 + 133151 GACATGATTGCGTTTTTGATCTCTACATTCTGTTCTTTCTTGTACAGAAACTA--------ttttttt------tattt s panTro5.chr17 16306884 65 + 83181570 GACATGATTGCGTTTTTGATCTCTACATTCTGTTCTTTCTTGTACAGAAACTA--------ttttttt------tattt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211746 66 + 83442489 GACATGATTGCGTTTTTGATCTCTACATTCTGTTCTTTCTTGTACAGAAACTA-------tttttttt------tattt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046907 65 + 4267968 GACATGATTGCGTTTTTGATCTCTACATTCTGTTCTTTCTTGTACATAAACTA--------ttttttt------tattt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027205 67 - 2193130 GACATGATTGCGTTTTTGATCTCTACATTCTGTTCTTTCTTGTACAGAAACTG--------CTTTTTT----AAAAttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099777 70 - 77216781 GGCATGATTGGGTTTTTGATCTCTGCATTCTGTTCTTTCTTGTACATAAACTA--------tttttttttttt-aattt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012036 73 - 80997621 GGCATGATTGGGTTTTTGATCTCTGCATTCTGTTCTTTCTTGTACAGAAACTA------ttttttttttttttaaattt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069739 71 + 10377808 GGCATGATTGGGTTTTTGATCTCTGCATTCTGTTCTTTTTTGTACAGAAACTA--------ttttttttttttaaattt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954646 73 - 8458610 GGCATGATTGGGTTTTTGATCTCTGCATTCCGTTCTTTCTTGTACAGAAACTA------ttttttttttttttaaattt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900217 71 + 75148670 GGCATGATTGGGTTTTTGATCTCTGCATTCTGTTCTTTCTTGTACAGAAACTA--------TTTTTTTAAAAAAAAttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139673 72 + 4244037 GGCATGATTGGGTTTTTGATCTCTACATTCTGTTCTTTCTTGTACAGAAACTA-------ttttttttttttttaattt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162466 79 + 4569836 GGCATGATTGGGTTTTTGATCTCTGCATTCTGTTCTTTCTTGTACAGAAACTAtttctttttttttttttttttaattt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118684 64 - 159171411 GGCATGATTGGGGGTTCGGTCTCTGCATTCTGTTC----TTGTACAGAAACGA--------tttatttttt---tattt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1829056 64 + 3513951 GGCATGACTGGGTTTTTGGTCTCTGCATTCTGTTC----TGGTACAGAAACTA--------tttatctttt---tattt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877372 64 + 1920343 GGCATGATCGGGTTTTTGGTCTCTGCAGTCTGTTC----TTGTACAGAAACTA--------tttatctttt---tattt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994153 64 - 7032639 GGCATGATTGGGTTTTTGGTTTCTGCATTCTGTTC----TTGTACAGAAACGA--------tttatctttt---tattt i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22077571 46 - 122082543 GGCATG--------CTTACTCTCT------TTTTTTTTTTTAAAACCAAAttt--------ttccttt----------- i mm10.chr11 C 0 I 7904 s dasNov3.JH570468 423257 40 - 852752 CACATGCCTAGGAtttt-------------------------taaaaaaacta--------ttattat------tattt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816869 27 + 28711273 I a score=162579.000000 s hg38.chr17_GL383564v2_alt 117835 16 + 133151 attagagacagggtct s panTro5.chr17 16306949 16 + 83181570 attagagatagggtct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211812 16 + 83442489 attagagacagggtct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046972 16 + 4267968 attagagacagggtct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027272 16 - 2193130 attagagacagggtct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099847 16 - 77216781 attagagacagggtct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012109 16 - 80997621 attagagacagggtct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069810 16 + 10377808 attaaagacagggtct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954719 16 - 8458610 attagagacagggtct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900288 16 + 75148670 attagagacagggtct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139745 16 + 4244037 attagagacagggtct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162545 16 + 4569836 attagagacagggtct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118748 16 - 159171411 tttagtgacagggttt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1829120 16 + 3513951 attagcgacagggtct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877436 16 + 1920343 attggcgacagggtct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994217 16 - 7032639 attagcgacagggtct i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 423297 16 - 852752 ttttaaaagaagcttt i dasNov3.JH570468 C 0 I 8902 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816869 27 + 28711273 I a score=1962431.000000 s hg38.chr17_GL383564v2_alt 117851 196 + 133151 cgctccattgcc---------caggctggagtgtagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctgcctcagccttctgagtagctgggactacaggcatgcaccaccacacccagcaaa-tttttt-attttttaattttttgtagaggcaggatCTTGTCAGCAAA s panTro5.chr17 16306965 196 + 83181570 cgctccattgcc---------caggctggaatgtagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctgcctcagccttctgagtagctgggactacaggcatgcaccaccacacccagctaa-tttttt-attttttAATTTTTTGTAGAGGCAGGATCTTGTCAGCAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16211828 196 + 83442489 cgctccattgcc---------caggctggaatgtagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctgcctcagccttctgagtagctgggactacaggcatgcaccaccacacccagctaa-tttttt-attttttAATTTTTTGTAGAGGCAGGATCTTGTCAGCAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4046988 197 + 4267968 cgctccattgcc---------caggctggagtgtagtggcttgatcatggctccttgagctcagtcactgcaggcttgagctcttaggctcaagccatcctcctgcctcagccttctgagtagctgggactacaggcatgcaccaccacacccagctaattttttt-attttttAATTTTTTGTAGAGGCAGGATCTTGTCAGCAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027288 196 - 2193130 tgctccattgcc---------caggctggagtgtagtggcttgatcatggctccttgagctcagccactgcagccttgagctcttaggctcaagcaatcctcctgcctcagccttctgagtagctgggactacaggcatgcaccaccacacccagctaa-tttttt-attttttaattttttgtagaggcaggatCTTGTCAGCAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30099863 195 - 77216781 cgctccattgcc---------caggctggagtgcagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctacttcagccttctgagtagctgggactacaggcatacaccaccacaccc-tctag-tttgtt-attttttaattttttgtagaggcaggatCTTGTCAGCCAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012125 195 - 80997621 cgctccattgcc---------caggctggagtgcagtggcttaatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctacctcagccttctgagtagctgggactacaggcatacaccaccacaccc-tctaa-tttttt-attttttaattttttgtagagacaggatCTTGTCAGCAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2069826 195 + 10377808 cgctccattgcc---------caggctggagtgcagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctacctcagccttctgagtagctgggactacaggcatgcaccaccacaccc-tctag-tttgtt-attttttaattttttgtagaggcaggatCTTGTCAGCAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954735 195 - 8458610 cgctccattgcc---------caggctggagtgcagcggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctacctcagccttctgagtagccgggactacaggcatacaccaccacaccc-tctag-tttttt-attttttaattttttgtagaggcaggatCTTGTCAGCAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900304 195 + 75148670 cgctccattgcc---------caggttggagtgcagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctacctcaaccttctgagtagctggtactacaggcatgcaccaccacaccc-tctaa-tttttt-attttttaattttttgtagaggcaggatCTTGTCAGCAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139761 195 + 4244037 cgctccattgcc---------caggctggagtgcagtggcttggtcatggctccttgagatcagtcactgcagccttgagctcttaggctcaagccatcctcctacctcacccttctgagtagctgggactacaggcatacaccaccacaccc-tctag-tatttt-attttttaattttttgtagaggcaggatCTTGTCAGCAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162561 195 + 4569836 cgctccattgcc---------caggctggagtgcagtggcttgatcatggctctttgagctcagtcactgaagccttgagctcttaggctcaagccatcctcctacctcagccttctgagtagctgggactacaggcatgcaccaccacaccc-tctaa-tttttt-attttttAATTTTTTGTAGAGGCAGGATCTTGTCAGCAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118764 184 - 159171411 cactccgttgccctggagtgacaggctggggtgcagtggcttgatcatggctcc---------------------ttgagctcttaggctcaagccatcctcctgcctcagccttctgagtagctgggactacaggcatgcaccaccacacccagcgaa-tttttt-attttttAATTGTGTGTAGAGGCAGGACCTTGTCAGTAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1829136 196 + 3513951 cactccgttgcc---------caggctggagtgcggtggctttatcatggctccttgagctcagtcactgcagctttgagctcttaggctcaagccatcctcctgcctcagccttctgagtaaccgggactacaggcatgcaccaccacacccagctaa-tttttt-attttttAATTGTGTGTAGAGGCAGGACCTTGTCAGTAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877452 197 + 1920343 cactctgttgcc---------caggctggagtacagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagcccctctcctgcctcagccttctgagtaactgggactacaggcatgcaccgccacacctagctaa-ccttttaattttttAATTGTGTGTAGAGGCAGGACCTTGTCAGTAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994233 196 - 7032639 cactccgttgcc---------cagactggagtgcagtggcttgatcatggctccttgagctcagtcactgcagccttgagctcttaggctcaagccatcctcctgcctcagccttctgagtagctgggaccacaggcatgcaccaccacacccagctaa-tttttt-attttttAATTGTGTGTAGAGGCAGGACCTTGTCAGCAAA i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816869 27 + 28711273 I a score=504118.000000 s hg38.chr17_GL383564v2_alt 118047 62 + 133151 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA---TTTTTT--------TTTTTTTTTGT s panTro5.chr17 16307161 64 + 83181570 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-tttttttt--------tttttttttGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16212024 65 + 83442489 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGAttttttttt--------tttttttttGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4047185 64 + 4267968 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-TTTTTTTT--------TTTTTTTTGGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027484 56 - 2193130 CTTCATTTAATAGGCAGTCAAGTTACCCAATTAGGAAAACTAGAA-----------------TTTTTTTTTGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30100058 54 - 77216781 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-------------------TTTTTTTGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012320 54 - 80997621 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-------------------TTTTTTTGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2070021 54 + 10377808 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-------------------TTTTTTTGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954930 54 - 8458610 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-------------------TTTTTTTGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900499 53 + 75148670 TTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA--------------------TTTTTTGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2139956 55 + 4244037 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA------------------TTTTTTTTGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162756 54 + 4569836 CTTCATTTAATAGGCAGTCAAGTTCCCCAATTAGGAAAACTAGGA-------------------TTTTTTTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46118948 52 - 159171411 CTTCATTTAATAGACACTCAAA-TCCCCAATCAGGGAAACTAGGA--------------------TTTTTTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1829332 53 + 3513951 CCTCATTTAACAGGCACTCAAATTCCCCAATCAGGAAAACTAGGA--------------------TTGTTTGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877649 53 + 1920343 CTTCATTTAATAGGCACTCAAATTCCCCAATCAGGAAAACTAGGA--------------------TGTTTTGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994429 53 - 7032639 CTTCACTTAATAGGCACTCAAATTCCCCAATCAGGAACACTAGGA--------------------TTTTTTGT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22816896 72 + 28711273 CTTCATTAACTAGGCATTCAAATTCCCCAATAAGAAAAAAAACAA-GattttttaaaaaaaattttttattGT i otoGar3.GL873537 I 27 I 9516 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I a score=2198234.000000 s hg38.chr17_GL383564v2_alt 118109 226 + 133151 AAAGCAGTATCTGccacac-accaaagtaaattcctgatggatagcagcattaagtataaaaaatacaaccataaaatagatgaaaataaagcaaatagttgtctgatttggggatggaggagaacttttgaaac--aaaacactaggaaaaaaagatttccctacatagaaagaaatttctgtgcgtaaaaat---atagacacaactaaaagaaagt--gatacaccctggg s panTro5.chr17 16307225 228 + 83181570 AAAGCAGTATCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTATAAAAAATACAACCATAAAATAGATGAAAATAAAGCAAATAGTTGTCTGATTTGGGGATGGAGGAGAACTTTTGAAACATAAAACACTAGGAAAAAAAGATTTCCCTACACAGAAAGAAATTTCTGTGCGTAAAAAT---ATAGACACAACTAAAAGAAAGT--GATACACCCTGGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16212089 228 + 83442489 AAAGCAGTATCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTATAAAAAATACAACCATAAAATAGATGAAAATAAAGCAAATAGTTGTCTGATTTGGGGATGGAGGAGAACTTTTGAAACATAAAACACTAGGAAAAAAAGATTTCCCTACATAGAAAGAAATTTCTGTGCGTAAAAAT---ATAGACACAACTAAAAGAAAGT--GATACACCCTGGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4047249 227 + 4267968 AAAGCAGTATCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTATAAAAAATACAACCATAAAATAGATGAAAATAAAGCAAATAGTTGTCTGATTTGGGGATGGAGGAGAACTTTTGAAACATAAAACACTAGG-AAAAAAGATTTCTCTACATAGAAAGAAATTTCTGTGCGTAAAAAT---ATAGACACAACTAAAAGAAAGT--GATACACCCTGGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027540 222 - 2193130 AAAGCAGTATCTGCCACACAACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTATAAAAAATACAACCATAAAATAGATGAAAATAAAGCAA-------TCTGATTTGGGGATGGAGAAGAACTTTTGAAACATAAAACACTAGGAAAAAAAGATTTCCCTACATAGAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAAGAAAGT--GATACAACCTGGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30100112 227 - 77216781 AAAGCAGTACCTGccacac-accaaagtaaattcctgatggatagcagcattaagtgtaaaaaatacaaccataaaatagatgaaaataaagtgaatagttgtctgatttggggatagaggagaacttttgaaacataaaacaGTAGG-AAAAAAGATTTGCCTACATAGAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATACACCTTGGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012374 227 - 80997621 AAAGCAGTACCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTGTAAAAAATACAACCATAAAATAGATGAAAATAAAGTGAATAGTTGTCTGATTTGGGGATAGAGGAGAACTTTTGAAACATAAAACAGTAGG-AAAAAAGATTTGCCTACATAGAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATACACCTTGGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2070075 227 + 10377808 AAAGCAGTACCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTGTAAAAAATACAACCATAAAATAGATGAAAATAAAGTGAATAGTTGTCTGATTTGGGGATAGAGGAGAACTTTTGAAACATAAAACGGTAGG-AAAAAAGATTTGCCTACATAGAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATACGCCCTGGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1954984 227 - 8458610 AAAGCAGTACCTGCCACAC-ACCAAAGTAAATTCCTAATGGATAGCAGCATTAAGTGTAAAAAATACAACCATAAAATAGATGAAAATAAAGTGAATAGTTGTCTGATTTGGGGATAGAGGAGAACTTTTGAAACATAAAACAGTAGG-AAAAAAGATTTGCCTACATACAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATACACCTTGGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900552 227 + 75148670 AAAGAAGTATCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTGTAAAAAACACAACCATAAAATAGATGAAAATAAAGTGAATAGTTGTCTGATTTGGGGATAGAGGAGAACTTTTGAAACATAAAATGGTAGG-AAAAAAGATTTGCCTACATAGAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATATACCCTGGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2140011 227 + 4244037 AAAGCAGTACCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTGTAAAAAATACAACCATAAAATAGATGAAAATAAAGTGAAGAGTTGTCTGATTTGGGGATAGAGGAGAACTTTTGAAACATAAAACAGTAGG-AAAAAAGATTTGCCTACATACAAAGAGATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATACACCCTGGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2162810 227 + 4569836 AAAGCAGTATCTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGCATTAAGTGTAAAAAATACAACCACAAAATAGATGAAAATAAAGTGAATAGTTGTCTGATTTGGGGATAGAGGAGAACTTTTGAAACATAAAACAGTAGG-AAAAAAGATTTGCCTGCATAGAAAGAAATTTCTGTGCATAAAAAT---ATAGACACAACTAAAATAAAGT--GATACACCCTGGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46119000 230 - 159171411 AAAGCAGTATTTGCCACAC-ACCAAAGTAAATTCCTGATGGATAGCAGTTTTAAGTGTAAAAAATATAGTCATGAAATAGACGAAAATAAAGTGAGTAGTCGTCTGATTTGGGGATGGAGGAGAACTTTTGAAACATAAAACAGCAGG-AAAAAAGATTTGCCTAAATAAAAAGAAAATTCTATGGATAAAAATATCATAGACACAACTAAAAGAAAGTGGGATAgg--ctggg i calJac3.chr5 C 0 I 2247 s saiBol1.JH378271 1829385 233 + 3513951 AAAGCAGTATCTaccatac-accaaagtaaattcctgatggatagcagcattgagtgtaaaaaatacagccatgaaatagatgaaaataaagtgaatagttgtctgatttggggatggaggagaacttttgaaacataaaacaGTAGGAAAAAAAGATTTGCTTACATAAAAAGAAAATTCTATGGATAAAAATATCATAGACACAACTAAAAGAAAGTGGGATACACCCTGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877702 232 + 1920343 AAAGCAGTATCTGCCACAC-ACCAAAGTAAATTCCTGACGGATAGCAGTATTAAGTGTAAAAAACACAGCCAAGAAATAGATGAAAATAAAGTGAATAGT-GTCTGATTTGGGGATGGAGAAGAACTTTTGAAACATAAAACAGTAGGAAAAAAAGATTTGCCTACATAAAAAGAAAATTCCATGCATAAAGGTATCATAGACACAACTAAAAGAAAGTGGGATACACCCTGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6994482 233 - 7032639 AAAGCAGTATCTGccacac-accaaagtcaattcctgatggatagcagtattaagtgtgaaaaatacagccgcgaaatagatgaaaataaagcgaatagttgtctgatttggggatggaggagaatttttgaaacataaaacagtaggaaaaaaagatttgcctacataaaaagaaagttctatggataaaaatatcatagacacgactaaaagaAAGTGGGATGCGCCCTGAG i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816968 9516 + 28711273 I a score=2810961.000000 s hg38.chr17_GL383564v2_alt 118335 343 + 133151 acaaattttgcaacatgtgtgagtgacacaacgaaaagttaatatacctggcataataaaataagttcatataagtaaggtgggaaagatgggtagctaattagaatgagcagataatttctaaaaaggaaataacagtggcctataaaa--atatgcaa-tgataattactaagtacaaataaatactataatgagacttcataattggcctacccaattgacaaaga---------gatttt-aaaaataacaactaatattggcgaaggcactgtgaagtgaacacaaatgaggac-aatttttctggagagtaattAAAAAAATAAtttcaacttttcttttggattcagggg s panTro5.chr17 16307453 343 + 83181570 ACAAATTTTGCAACATGTGTGAGTGACACAACGAAAAGTTAATATACCTGGCATAATAAAATAAGTTCATATAAGTAAGGTGGgaaagatgggtagctaattagaatgagcagataatttctaaaaaggaaataacagtggcctataaaa--atatgcaa-tgataattactaagtacaaataaatactataatgagacttcataattggcctacccaattgacaaaga---------gatttt-aaaaataacaactaatattggcgaaggcactgtgaagtgaatacaaatgaggac-aatttttctggagagtaattAAAAAAATAAtttcaacttttcttttggattcagggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16212317 343 + 83442489 ACAAATTTTGCAACATGTGTGAGTGACACAACGAAAAGTTAATATACCTGGCATAATAAAATAAGTTCATATAAGTAAGGTGGGAAAGATGGGTAGCTAATTAGAATGAGCAGATAATTTCTAAAAAGGAAATAACAGTGGCCTATAAAA--ATATGCAA-TGATAATTACTAAGTACAAATAAATACTATAATGAGACTTCATAATTGGCCTACCCAATTGACAAAGA---------GATTTT-AAAAATAACAACTAATATTGGCGAAGGCACTGTGAAGTGAATACAAATGAGGAC-AATTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4047476 340 + 4267968 ACAAATTTTGCAACATGTGTGAGTGACACAATGAAAAGTTAATATACCTGGC---ATAAAATAAGTTCATATAAGTAAGGTGGGAAAGATGGGTAGCTAATTAGAATGAGCAGATAATTTCTAAAAAGGGAATAACAGTGGCCTATAAAA--ATATGCAA-TGATAATTACTaagtacaaataaatactataatgagacttcataattggcctacccaattgacaaaga---------gatttt-aaaaataacaactaatattggcgaaggcactgtgaagtgaatacaaatgaggac-aatttttctggagagtaattAAAAAAATAAtttcaacttttcttttggattcagggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2027762 340 - 2193130 ACAAATTTTGCAACATGTGTGAGTGACACAACGAAAAGTTAATACACTTGGC---ATAAAATAAGTTCATATAAGTAAGGTGGGAAAGATGGGTAGCTAATTAGAATGAGCAGATAATTTCTAAAAAGGAAATAACAGTGGACTATAAAA--ATATGTAA-TGGCAATTACTAAGTACAAATAAATAGTATAATGAGACTTCATAATTGGCCTACCCAATTGACAAAGA---------GATTTT-AAAAATAATAACTAATATTGGCAAAGGCACTGTGAAGTGAATACAAATGAGGAC-AATTTTTGTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30100339 349 - 77216781 ACAAATTTTGCAACATGTGTGAGTGACACAATGAGAAGTTAATATACTTGGC---AGAAAATAAGTTCATATAAGTAAGGTAGGAAAAATTGGTGACTAATTAGAATGAGCAGATAATTTCCAAAAAGGAAATAACAGTGGCCTATAAAA--ATATGCAA-TGACAAGTACTAAGTACAAACAAATACTATAATGAGACTTCATAATTGGCCTACCCAATTGACAAAGATATTTTAGGTATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGGAC-AATTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012601 349 - 80997621 ACAAATTTTGCAACATGTGTGAGTGACACAATGAGAAGTTAATATACTTGGC---AGAAAATAAGTTCATATAAGTAAGGTAGGAAAAATTGGTGACTAATTAGAATGAGCAGATAATTTCCAAAAAGGAAATAACAGTGGCCTATAAAA--ATATGCAA-TGACAAGTACTAAGTACAAACAAATACTATAATGAGACTTCATAATTGGCCTACCCAATTGACAAAGATATTTTAGGTATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGGAC-AATTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2070302 349 + 10377808 ACAAATTTTGCAACATGTGTGAATGACACAATGAAAAGTTAATATACTTGGT---AGAAAATAAGTTCATATAAGTAAGGTAGGAAAAATGGGTGGCTAATTAGAATGAGCAGATAATTTCCAAAAAGGAAATAACAGTGGCCTATAAAA--ATATGCAA-TGACAAGTACTAAGTACAAACAAATACTATAATGAAACTTCATAATTGGCCTACCCAATTGACAAAGATATTTTAGGTATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGGAC-AATTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1955211 346 - 8458610 ACAGATTTTGCAACATGTGTGAGTGACACAATGAGAAGTTAATATACTTGGC---AGAAAATAAGTTCATATAAGTAAGATAGGAAAAATGGGTGACTAATTAGAATGAGCAGATAATTTCCAAAAAGGAAATAACAGTGGCCTATAAAA--ATATGCAA-TGACAAGTACTAAGTACAAATAAATACT---ATGAGACTTCATAATTGGCCTACCCAATTGACAAAGATATTTTAGGTATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGGAC-AATTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64900779 336 + 75148670 ACAAATTTTGCAACTTGTGTGAGTGACACAATGAAAAGTTAATATACTTGGC---AGGAAATAAGTTCATATAAGTAAGGTAGGAAAAATGGGTGGCTAATTAGAATGAGCAGATAATTTCCAAAAAGGAAATAACAGTGGCCTATAAAC--ATATGCAA-TG-------------ACAAATAAATACTATAATGAGACTTCATAATTGGCCTACCCAATTGACAAAGATATTTTAGGTATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGGAC-AATTTTTCTGGAGAATAATTAAAAAAATAAtttcaacttttcttttgtattcagggg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2140238 349 + 4244037 ACAAATTTTGCAACATGTGTGAGTGACACAATGAAAAGTTAATATACTTGGC---AGGAAATAAGTTCATATAAGTAAGATAGgaaaaatgggtgactaattagaatgagcagataatttgcaaaaaggaaataacagtggcctataaaa--atatgcaa-tgacaagtactaagtacaaataaatactataatgagacttcataattggcctacccaattgacaaagatATTTTAGGTATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGAAC-AATTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2163037 349 + 4569836 ACAAATTTTGCAACATGTGTGAGTGACACAATGAAAAGTTAATACACTTGGC---AGAAAATAAGTTCATATAAGTAAGGTAGGAAAAATGGGTGGCTAATTAGAATGAATAGGTAATTTCCAAAAAGGAAATAACAGTGGCCTATAAAA--ATATGCAA-TGACAAGTACTAAGTACAAATAAATACTATAATGAGACTTCATAATTGGCCTACCCAATTGACACAGATATTTTAGATATTTT-AAAAATAATAACTTATATTGGTGAAAGCACTGTGGAGTGAATACAAATGAGGGT-AGTTTTTCTGGAGAGTAATTAAAAAAATAAtttcaacttttcttttggattcagggg i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1829618 338 + 3513951 ACAAATTTTGCAACGTATG----TGACACAATGAAAAGTTAATATGCTTAGC---ATAAAATAAGTTGATGTAAGTAAGGTGGGAAGGATGGGTAGCTAATTAGAATAGGCAGATAATTTCCaaaaaggaaataacagtggcctgtaaaaacacatgcaattaacaagtaataagcacaaataaatactacaatgagactttataattggcctagccaattgacaaaga---------gattttaaaaaatagtaactaatattggtgaaggcacagtgaaGTGAAAACAAATGAGAAC-TTTTTTTCTGGAGAGTAATT--AAAAATAAtttcaacttttcttttgaaatctgggg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1877934 339 + 1920343 ACAAATTTTGCAACATGTG----TGACACAATGAAACGTTAATATGCCTGGC---ATAAAATAAGTTGATGTAAGTAAGGTGGGAAAGATGGGTAGCTAATTAGAACAAGCAGAAAATTTCCAAAAAGGAAATAACAATGGCCTATAAAAACACATGCAG-TAATAAGTAATAAGCACAAATAAATACTACAATGAGACTTTATAATTGTCCTAGCCAATTGACAAAGA---------GATTTTGAAAAATAGTAACTAATATTGGGGAAGGCACAGTGAAGTGAAAACAAATGAGGACAATTTTTTCTGGAGAGTAATT-AAAAAATAAtttcaacttttcttttgaattctgggg i cebCap1.NW_016107730v1 C 0 I 1448 s aotNan1.NW_018502359v1 6994715 339 - 7032639 ACAAATTTTGCAACATGTG----TGACACAATGAAAAGTTAATATGCTTAGC---ATGAAATAAGTTGATGTAAGTAAGGTGGGAAAGATGGGGAGCTAATTAGAACAagcagaaaatttccaaaaaggaaatgacagtggcctataaaaacatgtgcaa-taacaagtaataagcacaaataaatgctacaatgagactttataattggcctagccaattgacaaaga---------gattttaaaaaatagtaactaatattggtgaaggcacagtgaaGTGAAAACAAATGAGGACAATGTTTTCTGGAGAGTAATT-AAAAAAGAAtttccacttttcttttgaattctgggg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816968 9516 + 28711273 I e calJac3.chr5 46119230 2247 - 159171411 I a score=239450.000000 s hg38.chr17_GL383564v2_alt 118678 31 + 133151 gtatacgtgtaggtttgctacctgggtatat s panTro5.chr17 16307796 31 + 83181570 atatatgtgtaggtttgctacctgggtatac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16212660 31 + 83442489 atatatgtgtaggtttgctacctgggtatac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4047816 31 + 4267968 gtatatgtgtaggtttgctacctgggtatat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2028102 31 - 2193130 gtatacgtgtaggtttgttacctgggtatat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30100688 31 - 77216781 gtatatgtgcaggtttgttacctgggtatat i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012950 31 - 80997621 gtatatgtgcaggtttgttacctgggtatat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2070651 31 + 10377808 gtatatgtgcaggtttgttacctgggtatat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1955557 31 - 8458610 gtatatgtgcaggtttgttacctgggtatat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64901115 31 + 75148670 gtatatgtgcaggtttgttacctgggtatat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2140587 31 + 4244037 gtatatgtgcaggtttgttacctgggtatat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2163386 31 + 4569836 gtatatgtgcaggtttgttacctggttatat i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1829956 31 + 3513951 gcatatgtgcaggtttgttacctgggcatat i saiBol1.JH378271 C 0 I 6 s aotNan1.NW_018502359v1 6995054 31 - 7032639 gcatatgtgcaggtttgttacctgggtatat i aotNan1.NW_018502359v1 C 0 I 1418 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816968 9516 + 28711273 I e cebCap1.NW_016107730v1 1878273 1448 + 1920343 I e calJac3.chr5 46119230 2247 - 159171411 I a score=132914.000000 s hg38.chr17_GL383564v2_alt 118709 23 + 133151 atgctgaggtttgtggtacaatt s panTro5.chr17 16307827 23 + 83181570 atgctgaggtttgtggtacaatt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16212691 23 + 83442489 atgctgaggtttgtggtaaaatt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4047847 23 + 4267968 atgctgaggtctgtggtacaaat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2028133 23 - 2193130 aggctgaagtttgtggtacaatt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30100719 23 - 77216781 atgctgaggtgtatggcacaatt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28012981 23 - 80997621 atgctgaggtgtatggcacaatt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2070682 23 + 10377808 atgctgaggtgtatggcacaatt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1955588 23 - 8458610 atgctgaggtgtatggcacaatt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64901146 23 + 75148670 atgctgaggtgtatggcacaatt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2140618 23 + 4244037 atgctgaggtgtatggcacaatt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2163417 23 + 4569836 atgctgaggtgtatggcacaatt i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1829993 23 + 3513951 aggctgaggtttgtgggactgtt i saiBol1.JH378271 I 6 I 1407 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816968 9516 + 28711273 I e aotNan1.NW_018502359v1 6995085 1418 - 7032639 I e cebCap1.NW_016107730v1 1878273 1448 + 1920343 I e calJac3.chr5 46119230 2247 - 159171411 I a score=9019669.000000 s hg38.chr17_GL383564v2_alt 118732 1573 + 133151 gatctcatcatccagatagtgagcatagtaaccaatagttagtttttctacccttg-ctcctctccttccctttcccctctcatagtctccagtgtctattgttgccatatttacgtccatgtgaattcactgtttagctcccacttgtaagtgagaacacatggtatttagctttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaatgacatgatttttttttttatggccaggtagtattccatggtgtatgtgtgccacattttccttacatagtccactgctgatgggcatttaggctgattctatgtctttgctattgtgaatagtgctgcaatgaacatataagtggatgtgtg-tttttttggtagaacgatttattttcttttggatgtatacccagtgatataatttggatctgtgttcctgcccaaatctcatgttcagttgttaattcccagcgttgcaggtgggtcctggtggga---ggtgattggatcacaggggtgatttctgatgaatggtttagcactagcccccttggttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgccctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaacctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttctaaattacccagtctcaggcatttcttcatagtagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctatttgaagttctttgagaaatctctaaactgcgttccacagtggctgaactaatttacattcccaccaacagtgtataagcggtcccttttctctacaccctcaccaacatctgttg-ttttttgactttttaataattgccattctgactggtgtgagatggtatcttactgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttgaccactcgcatgtcttcttttgagaagtgtctgttcatgtcttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttaagtttttcatagattctggatattagatcttttttggatgcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttactgtgctgaagctctttcatttaaatagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaatgca-ttttttcccaagactagtgttcagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatacagaggttgtttaattcttctgcatatggctagccagttatccca s panTro5.chr17 16307850 1572 + 83181570 gatctcatcatccaggtagtgagcatagtaaccaatagttagtttttctacccttg-ctcccctccttccctttcccctctcatagtccccagtgtctattgttgccatatttacgtccatgtgaattcactgtttagctcccacttgtaagtgagaacacatggtatttagctttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaatgacatga-ttttttttttatggccaggtagtattccatggtgtatgtgtgccacattttctttatatagtccactgctgatgggcatttaggctgattctatgtctttgctattgtgaatagtgctgcaatgaacatataagtggatgtgtg-tttttttggtagaacgatttattttcttttggatgtatacccagtgatatgatttggatctgtgttcctgcccaaatctcatgttcagttgttaattcccagcgttgcaggtgggtcctggtggga---ggtgattggatcacaggggtgatttctgatgaatggtttagcactagcccccttggttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgccctggccatgtgaagtgcaagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaacctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttctaaattacccagtctcaggcatttcttcatagtagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctatttgaagttctttgagaaatctctaaactgcgttccacagtggctgaactaatttacattcccaccaacagtgtataagcggtcccttttctctacaccctcaccaacatctgttg-ttttttgactttttaataattgccattctgactggtgtgagatggtatcttactgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttgaccactcgcatgtcttcttttgagaagtgtctgttcatgtcttttgcccactttttaacagggttatttgttttttccttgttgaattgtttaagtttttcatagattctggatattagatcttttttggatgcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttactgtgctgaagctctttcatttaaatagatcccacttgtcaatttttatttttgttgcatttgtttttgagaacttagtaatgca-ttttttcccaagactagtgttcagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatacagaggttgtttaattcttctgcatatggctagccagttatccca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16212714 1571 + 83442489 gatctcatcatccaggtagtgagcatagtaaccaatagttagtttttctacccttg-ctcccctccttccctttcccctctcatagtccccagtgtctattgttgccatatttacgtccatgtgaattcactgtttagctcccacttgtaagtgagaacacatggtatttagctttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaatgacatga--tttttttttatggccaggtagtattccatggtgtatgtgtgccacattttctttatatagtccactgctgatgggcatttaggctgattctatgtctttgctattgtgaatagtgctgcaatgaacatataagtggatgtgtg-tttttttggtagaacgatttattttcttttggatgtatacccagtgatatgatttggatctgtgttcctgcccaaatctcatgttcagttgttaattcccagcgttgcaggtgggtcctggtggga---ggtgattggatcacaggggtgatttctgatgaatggtttagcactagcccccttggttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgccctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaacctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttctaaattacccagtctcaggcatttcttcatagtagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctatttgaagttctttgagaaatctctaaactgcgttccacagtggctgaactaatttacattcccaccaacagtgtataagcggtcccttttctctacaccctcaccaacatctgttg-ttttttgactttttaataattgccattctgactggtgtgagatggtatcttactgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttgaccactcgcatgtcttcttttgagaagtgtctgttcatgtcttttgcccactttttaacagggttatttgttttttccttgttgaattgtttaagtttttcatagattctggatattagatcttttttggatgcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttactgtgctgaagctctttcatttaaatagatcccacttgtcaatttttatttttgttgcatttgtttttgagaacttagtaatgca-ttttttcccaagactagtgttcggaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatacagaggttgtttaattcttctgcatatggctagccagttatccca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4047870 1570 + 4267968 gatctcatcattcaggtagtgagcatagtaaccaatagttagtttttctacccttg-ctcccctccttccctttcccctctcatagtccccagcgtctattgttgccatatttacgtccatgtgaattcactgtttagctcccacttgtaagtgagaacacatggtatttagctttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaatgacatga-ttttttttttatggccaggtagtattccatggtgtatgtgtgccacattttctttatatagtccactgctgatgggcatttaggctgattctatgtctttgctattgtgaatagtgctgcaatgaacatataagtggatgtgtg-tttttttggtagaacgatttattttcttttggatgtatacccagtgatatgatttggatctgtgttcctgcccaaatctcatgttcagttgttaattcccagcattgcaggtgggtcctggtggga---ggtgattggatcacaggggtgatttctgatgaatggtttagcactagcccccttggttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcttgccctggccatgtgaagtgccagctacccttttcctgctgccatgattgtaagttttctgaggcctccccagaacctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttctaaattacccagtctcaggcatttcttcatagtagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctgtttgaagttctttgagaaatctctaaactgcgttccacagtggctgaactaacttacattcccaccaacagtgtataagcggtcccttttctctacaccctcaccaacatctgttg-ttttttgactttttaataattgccattctgactggtgtgagatggtatcttactgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcac--gtttgttgaccactcacatgtcttcttttgagaagtgtctgttcatgtcttttgcccactttttaacagggtcatttgttttttccttgttgaattgttgaagtttttcatagattctggatattagatcttttttggatgcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttactgtgctgaagctctttcatttaaatatatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaatgca-ttttttcccaagactagtgttcagaatgatgcttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatacagaggttgtttaattcttctgcatatggctagccagttatccca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2028156 1548 - 2193130 g-----atcatccaggtagtgagcatagcaaccaatagttagtttttctacccttg-accccgtccttccctttcccctctcatagtccccagtgtctgttgttgccatatttacgtccatgtgaatccactgtttagctcccacttgtaagtgagaacacatggtatttagctttctgttcttgtactaattcacttaggataatggcctccagctgcatccctgttgctgcaaatgacatga--tttttttttatggccaggtagtattccatggtgtatgtgtgccacattttctttatatagtccactgctgatgggcatttaggctgattctatgtctttgctattgtgaatagtgctgcaatgaacatataagtggatgtgtg-tttttttggtagaaggatttattttcttttggatgtatacccagtgatatgatttgaatttgtgttcctgcccaaatctcatattcagttg-taattcccagtgttggaggtgggtcctggtggga---gatgattggatcacaggggtgatttctgatgaatggtttagcaccagcccccttggttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactatttctcttcctcctgctctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgtctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttctaaattacccagtctcaggcatttcttcatagcagtgcaagaacagactaatacacccagtaatgagattgctgggttgaatggtagttctatttgaagttctttgagaaatctctaaactgcattccacagtggctgaactaatttac-----------------ataagcgatcccttttctctacaccctcaccaacatctgttg-ttttttgactttttagtaattgccattctgaccggtgtgagatggtatcttactgtgattttgatttgcatttctctgataattaatgatgtagagcattttttcacatgtttgttgaccacttgcatgtcttcttttgagaagtgtctgttcgtgtcttttgcccattttttaacggggtcatttgttttttccttgttgaattgtttaagtttttcatggattctggatattagatctttgttggatgcatagtttgtggatattttcttccattctataggttatctgtttactctcttgatagtttcttttgctgtgctgaagctctttcatttaaatagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaataca-ttttttcccaagaatagtgttcagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatctatcttgacttaatttttctatatggtgaaatatagaggttgtttaattcttctgcatatggctagccagttatccca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30100742 1568 - 77216781 gatctcattatccaggtagtgagcatagtaaccaatagttagtttttctacccttg-cccccctccttccctttcccctctgatagttccctgtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatggtatttagttttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaacgacatta---tttttttcatggccaggtagtattccatggtatatgtgtgccacattttctttatacagtccactgctgatgggcatttaggctgattccatgtctttgctgttgtgaatagtgctgcaatgaacatgtaagtggatgtgtg-tttttttagtggaacaatttattttcttttggatgtatacccagtgatatgatttggatctgtgttcctacccaaatctcacgttcagttg-taattcccaatgttggaggttggtcctggtggga---ggttattggatcacaggggggatttatcatgaatggtttagcaccagcccccttagttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgctctggccgtgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttcacaattacccagtctcaggcatttctttatagcagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctattttaagttaattgaggaatttctaaactgcattccacagtagctgaactaatttgcattcccaccaacagtgaataaatggtcccttttttctacaccctcaccaactactgttgtttttttgattttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttggccacttgcatgtcctcttttgagaagtgtctgttcatgacttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttacgtttttcatagattctggatattagatctttgttggattcata-tttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttgttgcgctgaagctctttcatttaattagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaataaattttttccccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatatagaggttgtttaatccttctgcatatggctagccagttatccca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28013004 1567 - 80997621 gatctcattatccaggtagtgagcatagtaaccaatagttagtttttctacccttg-cccccctccttccctttcccctctgatagttccctgtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatggtatttagttttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaacgacatta---tttttttcatggccaggtagtattccatggtatatgtgtgccacattttctttatacagtccactgctgatgggcatttaggctgattccatgtctttgctgttgtgaatagtgctgcaatgaacatgtaagtggatgtgtg-tttttttagtggaacaatttattttcttttggatgtatacccagtgatatgatttggatctgtgttcctgcccaaatctcacgttcagttg-taattcccaatgttggaggttggtcctggtggga---ggttattggatcacaggggggatttatcatgaatggtttagcaccagcccccttagttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgctctggccgtgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttcacaattacccagtctcaggcatttctttatagcagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctattttaagttaattgaggaatttctaaactgcattccacagtagctgaactaatttgcattcccaccaacagtgaataaatggtcccttttttctacaccctcaccaactactgttg-ttttttgattttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttggccatttgcatgtcctcttttgagaagtgtctgttcatgacttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttacgtttttcatagattctggatattagatctttgttggattcata-tttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttgttgtgctgaagctctttcatttaattagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaataaatttttttcccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatatagaggttgtttaatccttctgcatatggctagccagttatccca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2070705 1564 + 10377808 gatctcattattcaggtagtgagcatagtaaccaatagttagtttttctacccttg-cccccctccttccctttcccctctcatagttccctgtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatggtatttagttttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaacgacatga--ttttttttcatggctaggtagtattccatggtatatgtgtgccacattttctttatacagtccactgctgatgggcatttaggctgattccatgtctttgctgttgtgaatagtgctgcaatgaacatgtaagtggatgtgtg-tttttttggtggaacaat---ttttcttttggatgtatacccagtgatatgatttggatctgtgttcctgcccaaatctcatgttcagttg-tgattcccaatgttggaggttggtcctggtggga---ggttattggatcacaggggggatttatcatgaatggtttagcaccagcccccttagttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgctctggccatgtgaagagccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgcctgcatcatgcttcctgtatagcttgtgaaactgtgagccagttaatcctcttttctttcacaattacccagtctcaggcatttctttatagcagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctattttaagttctttgaggaatttctaaactgcattccacagtagctgaactaatttgcattcccaccaacagtgaataaatggtcccttttttctacaccctcaccaactactgttg-ttttttgattttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttggccacttgcatgtcctcttttgagaagtgtctgttcatgacttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttacgtttttcatagattctggatattagatctttgttggattcata-tttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttgttgtgctgaagctctttcatttaattagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaataaa-ttttttcccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatatagaggttgtttaatccttctgcatatggctagccagttatccca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1955611 1567 - 8458610 gatctcattatccaggtagtgagcatagtaaccaatagttagtttttctacccttgccccccctccttccctttcccctctcatagttccctgtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatggtatttagttttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaactacatta----tttttttatggccaggtagtattccatggtatatgtgtgccacattttctttatacagtccactgctgatgggcatttaggctgattccatgtctttgctgttgtgaatagtgctgcaatgaacatgtaagtggatgtgtg-tttttttggtggaacaatttattttcttttggatgtatacccagtgatatgatttcgatctgtgttcctgcccaaatctcatgttcagttg-taattcccaatgttggaggttggtcctggtggga---ggttattggatcacaggggggatttatcatgaatggtttagcaccagctcccttagttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccattctctctcttcctcctgctctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttcacaattacccagtctcaggcatttctttatagcagtgcaagaacagactaatacacccagtaatgggattgctgggttgaatggtagttctgttttaagttctttgaggaatttctaaactgcattccacagtagctgaactaatttacattcccaccaacagtgaataagtggtcccttttttctacaccctcaccaactactgttg-ttttttgattttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttggccacttgcatgtcctcttttgagaagtgtctgttcatgacttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttacgtttttcatagattctggatattagatctttgttggattcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttgttgcgctgaagctctttcatttaattaaatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaataat-ttttttcccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatatagaggttgtttaatccttctgcatatggctagccagttatccca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64901169 1564 + 75148670 gatctcattatccaggtagtgagcatagtaaccaatagtta----ttctacccttg-cccccctccttccctttcccctctcatagttccctgtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatagtatttagttttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaacgacatga--ttttttttcacggccaggtagtattccatgatatatgtgtgccacattttctttatacagtccactgctgacgggcatttaggctgattccatgtctttgctattgtgaatagtgctgcaatgaacatgtaagtggatgtgtg-tttttctggtgtaacgatttattttcttttggatgtatacccagtgatatgatttggatctctgttcctgcccaaatctcacgttcagttg-taattcccaatgttggaggttggtcctggtggga---ggttattggatcacagaggggatttatcatgaatggtttagcaccagcccccttagttgtgacagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgctctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccgattaatcctcttttctttcacaattacccagtctcaggcatttctttatagcagtgcaagaacagactaatacatccagtaatgggattgctgggttgaatggtagttctattttaagttctttgaggaatttttaaactgcgttccacagtggctgaactaatttacattcccaccaacagtgaataagtggtcccttttctctacaccttcaccaacaactgttg-ttttttgactttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgtatttctgtgatgattaatgatgtggagcattttttcacatgtttgttggccacttgcatgtcttcttttgagaagtgtctgttcatgacttttgcccactttttaacagggttgtttgtttttttcttgttgaattgtttatgtttttcatagattctggatattagatctttgttggattcatagtttgtggatattttcttccattctataggttatctgtttaatctgttgatagtttcttttgttgcgctgaagctctttcatttaattagatcccacttgtcaatttttgtttttgttgcatttgtttttgggaacttagtaataaa-tttttccccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatatagaggttgtttaattcttctgcatatggctagccagttatccca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2140641 1556 + 4244037 gatctcattatccaggtagtgagcatagtaaccaatagttagtttttctacccttg-cccccctccttccctttcccctctcatagttccctgtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatggtatttagttttctgttcttgtattaattcacttaggataatggcctccagctgcatccatgttgctgcaaacgacatta---tttttttcatggccaggtagtattccatggtatatgtgtgccacattttctttatacagtccactgctgatgggcattta------------gtctttgctgttgtgaatagtgctgcaatgaacatgtaagtggatgtgtgttttttttggtggaacaatttattttcttttggatgtatacccagtgatatgattcggatctgtgttcctgcccaaatctcacgttcagttg-taattcccaatgttggaggttggtcctggtggga---ggttattggatcacaggggggatttatcatgaatggtttagcaccagccccctttgttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgctctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcctccccagaatctgagaagatgcctgcatcatgcttcctgtatagcttatgaaactgtgagccaattaatcctcttttctttcacaattacccagtctcaggcatttctttatagcagtgcaagaacagactaatacacacagtaatgggattgctgggttgaatggtagttctgttttaagttctttgaggaatttctaaactgcattccacagtagctgaactaatttacattcccaccaacagtgaataagtggtcccttttttctacaccctcaccaactactgttg-ttttttgattttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgcatttctctgatgattaatgatgtggagcattttttcacatgtttgttggccacttgcatgtcctcttttgagaagtgtctgttcatgacttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttacgtttttcatagattctggatattagatctttgttggattcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttcttttgttgcactgaagctctttcatttaattagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagtaataat-ttttttcccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccatcttgagttaatttttctatatggtgaaatatagaggttgtttaatccttctgcatatggctagccagttatccca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2163440 1569 + 4569836 gatctcattatccaggtggtgagcataataaccaatagttagtttttctacccttg-cccccctccttcccttgcccctctcatagttcc--gtgtctattgttaccatatttacatccatgtgcatccactgtttagctcccatttataagtgagaacacatggtatttagttttctgttcttgtattaatttacttaggataatggcctccagctgcatccatgttgctgaaaatgacatga--ttttttttcacggccaggttgtattccatggtatatgtgtgtcacattttctttatacagtccactgctgatgggcatttaggttgattccatgtctttgctattgtgaatagtgctgcaatgaacatgtaagtagatgtgtg-tttttttggtggaacgatttattttcttttggatgtatacccagtgatatgatttggatctgtgttcctgcccaaatctcatgttcagttg-taattcccagtgttggaggttggtcctggtgggaggtggtgattggatcacaggggggatttatcatgaatagtttagcaccagcccccttggttgtgatagtgagtgagttcttgtgagatctggtcatttaaaagtgtgtagcatctccccactctctctcttcctcctgctctggccatgtgaagtgccagctaccctttgcctgctgccatgattgtaagttttctgaggcatccccagaatctgagaagatgcctgcatcatgcttcctatatagcttatgaaattgtgagcgaagcagtcctcttttctttcacaattacccagtctcaggcattcctttatagcagtgcaagaacagactaatacacccagtagtgggattgctgggttgaatggtagttctattttaagttctttgaggaatttctaaactgcgttccacagtggctgaactaatttacattcccaccaacagtgaataagtggtcccttttctctacaccctcaccaacaactgttg-ttttttgactttttaataactgccattctgactggtgtgagatggtatcttattgtggttttgatttgcatttctgtgatgattaatgatgtggagcattttttcacatgtttgttggccacttgcatgtcttcttttgagaagtgtctgttcatgacttttgcccactttttaacagggtcatttgttttttccttgttgaattgtttacatttttcatagattctggatattagatctttgttggattcatagtttgtggatattttcttccattctataggttatctgtttactctgttgatagtttattttgttgtgctgaagctctttcatttaattagatcccacttgtcaatttttgtttttgttgcatttgtttttgagaacttagcaataaa-ttttttcccaagactagtg--cagaatgatgtttcctagtttttcttctaggattcttatagtttgaggccttacatttaaatctttaatccttcttgagttaatttttctatatgatgaaatatagaggttgtttaattcttctgcatatggctagccagttatccca i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816968 9516 + 28711273 I e aotNan1.NW_018502359v1 6995085 1418 - 7032639 I e cebCap1.NW_016107730v1 1878273 1448 + 1920343 I e saiBol1.JH378271 1830016 1407 + 3513951 I e calJac3.chr5 46119230 2247 - 159171411 I a score=5566205.000000 s hg38.chr17_GL383564v2_alt 120305 547 + 133151 gcacca-tttattgaatcgggagtcctttccccaatgcttatttttgttaactttgtcaaagatcaggtggctgtaggtgagcagctttatttccggattctctattctgttccat---tgtatatgtctgtttttgtaccagtaccatgctgttttggttactgtagctttacactatagtttgaaattgggtaac------gtgataccttccactttgt--tctttctgcttaggattgcattggctctttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagTGTTGATTCTGGAGCCatgttgcaacagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcgtaaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttacactcccatcagcaatgtgtgagactatctgtctcttcactccttattacataatgtgttatc s panTro5.chr17 16309422 549 + 83181570 gcacca-tttattgaatcgggagtcctttccccaatgcttatttttgttaactttgtcaaagatcaggtggctgtaggtgagcagctttatttccggattctctattctgttccat---tgtatatgtctgtttttgtaccagtaccatgctgttttggttactgtagccttacactatagtttgaaattgggtaat------gtgataccttccactttgt--tctttctgcttaggattgcattggctctttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagTGTTGATTCTGGAGCCatgttgcaacagatactgtatacttacatcattttatatatatatattgatatatccctgtcgtaaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttacactcccatcagcaatgtgtgagactatctgtctcttcactccttattacacaatgtgttatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16214285 549 + 83442489 gcacca-tttattgaatcgggagtcctttccccaatgcttatttttgttaactttgtcaaagatcaggtggctgtaggtgagcagctttatttccggattctctattctgttccat---tgtatatgtctgtttttgtaccagtaccatgctgttttggttactgtagccttacactatagtttgaaattgggtaat------gtgataccttccactttgt--tctttctgcttaggattgcattggctctttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagTGTTGATTCTGGAGCCatgttgcaacagatactgtatacttatatcattttatatatatatcttgatatatccctgtcgtaaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttacactcccatcagcaatgtgtgagactatctgtctcttcactccttattacacaatgtgttatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4049440 547 + 4267968 gcacca-tttattgaatcaggagtcctttccccactgcttatttttgttaactttgtcaaagatcaggtggctgtaggtgagcagctttatttccggattctctattctgttccat---tgtatatgtctgtttttgtaccagtaccatgctgttttggttactgtagccttacactatagtttgaaattgggtaat------gtgataccttccactttgt--tctttctgcttaggattgcattggctctttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagTGTTGATTCTGGAGCCatgttgtaacagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcgtaaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttacactcccatcagcaatgtgtgagactatctgtctcttcactccttattacacaatgtgttatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2029704 548 - 2193130 gcacca-tttattgaatagggagtcctttccccaatgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagatttatttctggattctctattctgttccat---tgtatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattacagtatagtttgaaattgggtaat------gtgatgccttccactttgt--tctttctgcttaggattgcattggctctttggga-tcttttctggttccacatgaaatttagaatagtttttttcaaattctgttaaaaatgatgttggtagtttgatagtgttgattctgtagCCatgttgcaacagatactgtatacttacatcattt--tatatatatcttgatatacccctgtcataaactctcagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaagttgtaccaatttacactctcatcagcaatgtgtgagactatctgtctcttcattccttattacacaatgtgttatc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30102310 547 - 77216781 gcacca-tttattgaataggcagtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctgggttctctattctgttccat---tatatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattataatatagtttgaaattgggtaat------gtgataccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagtgttgaatctgtagCCAGgttgcaatagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcataaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttaaactcccatcagcaatgtgtgttactatctgtctcttcattccttattacacaatgtgttatc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28014571 547 - 80997621 gcacca-tttattgaataggcagtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctgggttctctattctgttccat---tatatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattatagtatagtttgaaattgggtaat------gtgataccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagtgttgaatctgtagCCAGgttgcaatagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcataaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttaaactcccatcagcaatgtgtgttactatctgtctcttcattccttattacacaatgtgttatc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2072269 547 + 10377808 gcacca-tttattgaataggcagtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctgggttctctattctgttccat---tatatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattatagtatagtttgaaattgggtaat------gtgatgccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagtgttgaatctgtagCCatgttgcaatagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcataaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttaaactcccatcagcaatgtgtgttactatctgtctcttcattccttattacacaatgtgttatc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1957178 547 - 8458610 gcacca-tttattgaatagggggtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctgggttctctattctgttccat---tatatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattatagtatagtttgaaattgggtaat------gtgatgccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattatgttaaaaatgatgttggtagtttgatagtgttgaatctgtagTCatgttgcaatagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcataaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttaaactcccatcagcaatgtgtgttactatctgtctcttcattccttattacacaatgtgttatc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64902733 547 + 75148670 gcacca-tttattgaatagggggtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctgggttctctattctgttccat---tatatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattatattgtactttgaaattgggtaat------gtgatgccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttataatag-ttttttcaaattctgttaaaaatgatgttggtagtttgatagtgttgaatctgtagCCatgttgcaatagatactgtgtacttacatcattt--tatatatatcttgatatatctctgtcataaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttaaactcctatcagcaatgtgtgagactatctgtctcttcattccttattacacaatgtgttatc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2142197 547 + 4244037 gcacca-tttattgaatagggggtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctggattctctattctgttccat---tatatatgtctgtttttgtaccagtaccatgctgttttggttactgtagcattatagtatagtttgaaattgggtaat------gtgatgccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttagaatag-ttttttcaaattatgttaaaaatgatgttggtagtttgatagtgttgaatctgtagCCatgttgcaatagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcataaactcttagaatataaattattggatcaattagtttttgcattggtaattttgatggatattgccataaaggttgtaccaatttaaactcccatcagcagtgtgtgttactatctgtctcttcattccttattacacaatgtgttatc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2165009 543 + 4569836 gtatca-tttattgaatagggagtcctttccccattgcttatttttgttaactttgtcaaagatcagatggctgtaggtgagcagctttatttctgggttctctattctgttccat---tgtatatatctgtttttgtaccagtaccatgttgttttggttactgtagcattatagtatactttgaaattgggcaat------gtgatgccttccactttgt--tctttctgcttaggattgcattggctatttggga-tcttttctggttccatatgaaatttataatgg-gtttttcaaattctgttaaaaatgatgttggtagtttgctagtgttgaatctgtagCCatgttgcagtagatactgtatacttacatcattt--tatatatatcttgatatatccctgtcataaactcttagaatataaattattggatcaattagtttttgcatcggtaattttgatggatactgccataaaggttgtaccaatttaaactcccatcagcaatgtgtgaga----ctgtctcttcattccttattacacaatgtgttatc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46121477 558 - 159171411 gcaccattttattggttagggagttcttt-cccactgcttatttttattaattttgtcaaagatcagatggctgtagttaagcagctttatttctgggttatctattctgttccattggtgtatgtgtctgtttttgtaccagtaccatgctgttttggttactgtagccttatagtatagtttgaagttgggtaatgtgatggtaatgccttccactttgttttttttctgcttaggactgcattggctatctggga-ttttttctggttccatatgaaatttagaatag-ttttttcaaattctgtgaaaaatgatgttggtagtttgatggtgttgaatctgtagCCatgttggaatagatactgtatacttgtatcattt--tacatatatcttgatacatccctgtcataaactcttagaatataaattactggatcaattagtttttgcattggtaattttgctggatattgccataaaggttgtaccaatttccactcctatcagcaatgtgtgagacgatctgtctcttcattccttattacacaatgtgttatc i calJac3.chr5 I 2247 C 0 s saiBol1.JH378271 1831423 554 + 3513951 gcacca-tttattgaatagggactcctttccccactgcttatttttattgactttttcaaagatcagatggctgtagatgagcagctttatttctggattatctattctgttccattggtgtatgtgtttgtttttgtaccagtaccatgctgctttggttactgtagccttgtagtatagtttgaagttgggtaat------gtagtttcttccactttgttatttttctgcttaggactgcattggctatctgggatttttttctggttccatatgaaatttagaatagtttttttcaaattctgtgaaaaacgatgttggtagtttgatagtgttgaatctgtagCCatgttggaatagatactgtatacttatatcattt--tacacacatcttgatacatccctgtcctaaactcttagaatataaattactggatcaattagtttttgcattagtaattttgatggatattgtcataaagtttgtaccaatttacactcccatcagcaatgtgtgagactatctgtctcttcattccttattacacaatgtgttatc i saiBol1.JH378271 I 1407 C 0 s cebCap1.NW_016107730v1 1879721 552 + 1920343 gcacca-tttattgaatagggggtcctttccccactgcttatttttgttaactttgtcaaagattagatggctgtagatgagcagctttatttctgggttatctattctgttccattggtgtatgtgtctgtttttgtaccagtaccatgctgttttggttactatagccttatagtatagtttgaagttgggtaat------ttgatgccttccactttgttttttttctgcttaggactgcattggctatctggga-ttttttctggctccatatgaaatttagaatag-ttttttcaaattctgtgaaaaatgatgttggtagtttgatagtgttgaatctgtagCCatgttggaatagatactgtatacttatatcattt--tacatatatcttgatacatccctgtcataaactcttagaatataaattactggatcaattagtttttgcactggtaattttgatggatattgccataaaggttgtacccatttacagtcccatcagcaatgtgtgagactatctgtctcttcattccttattacacaatgtgttatc i cebCap1.NW_016107730v1 I 1448 C 0 s aotNan1.NW_018502359v1 6996503 552 - 7032639 gcacca-tttattgaatagggagtcctttccccactgcttatttttgttaacgttgtcaaagatcagatggatatagatgagcagttttatttctgggttatctattctgttacattggtgtatgtgtctgtttttgtaccagtaccatgctgttttggttactgtagccttaaagtatagtttgaagtcgggtaat------gtgatgccttccactttgttttttttctgcttaggactgcattggctatctggga-tttttttcggttccatatgaaatttagaatag-ttttttcaaattctgtgaaaaacgatgttgatagtttgatagtgttgaatctgtagCCatgttggaatagatactgtatacttatattattt--tacatatatcttgatacatccctgtcataaactcttagaatataaattactggatcaattagtttttgcatcggtaattttgatggatattgccataaaggttgtaccaatttacactcccatcagcaatgtgtgagactatctgtctcttcattccttattacacaatgtgttatc i aotNan1.NW_018502359v1 I 1418 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21428401 10173 + 61074082 I e otoGar3.GL873537 22816968 9516 + 28711273 I a score=834558.000000 s hg38.chr17_GL383564v2_alt 120852 85 + 133151 aaaatatatgaccttgcaaatctggta----acagataggattttggaattgttttaatctg-cttttctgttattgtgaatgcaactaa s panTro5.chr17 16309971 85 + 83181570 aaaatatatgaccttgcaaatctggta----acagataggattttggaattgttttaatctg-cttttctgttattgtgaatgcaactaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16214834 85 + 83442489 aaaatatatgaccttgcaaatctggta----acagataggattttggaattgttttaatctg-cttttctgttattgtgaatgcaactaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4049987 85 + 4267968 aaaatatatgaccttgcaaatctggta----acagataggattttggaatcgttttaatctg-cttttctattattgtgaatgcaactaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2030252 85 - 2193130 aaaagatatgactttgcaaatctggta----acagataggattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30102857 85 - 77216781 aaaagatatgaccttgcaaatctcata----acagatacgattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28015118 85 - 80997621 aaaagatatgaccttgcaaatctcata----acagatacgattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2072816 85 + 10377808 aaaagatatgaccttgcaaatctcata----acagatatgattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1957725 85 - 8458610 aaaagatatgaccttgcaaatctcata----acagatacgattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64903280 85 + 75148670 aaaagatatgaccttgcaaatcttata----acagataggattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2142744 85 + 4244037 aaaagatatgaccttgcaaatctcata----acagatacaattttggaatagttttaatctg-cttttctgttattgtgaatgcaactaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2165552 85 + 4569836 aaaagatatgaccttgcaaatctcata----acagataggattttgtaatagttgtaatctg-cttttctgttattgtgaatgcaactaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122035 85 - 159171411 aaggggtatgacctttcaaatctgata----acagataggatattggaatagttttaatcta-attttcagttattatgaatgcaactaa i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1831977 86 + 3513951 aaggggcatgaccttgcaaatctgata----acagataggatattggaacagctttaatctattttttctgttattatgaatgcaactaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1880273 75 + 1920343 aagggg----------caaatctgata----acagataggatattggaatagttttaatcta-attttctgttattatgaatgcaactaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6997055 82 - 7032639 aaggggtatgaccttgcaaatctgata----acagatatgatattggaatagttttaatcta-attttctg---ttatgaatgcaactaa i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 39636402 89 - 61074082 AAAAAGTGtgatcttgccaatctgatagtagaaagataggttctgacaatcattttaaattg-cacttctatcattgtgagtgaaattaa i canFam3.chr9 n 10173 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 22816968 9516 + 28711273 I a score=7513839.000000 s hg38.chr17_GL383564v2_alt 120937 681 + 133151 gcaatatttcatatgctcaaatgctattcatattccctcttccatgaattatcttttcatctccattgtcaatttttctactcggttgctggtctttct-ctttgattgatggaaatcctttgtTAAATAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TATGAGTTAC--TTGTATTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTATTCAaataata---ataataataa---------------aatGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgccacaataaatacatttactgctaatactttagttttcc-ttttagtg-ttttttcaaatatctgcatgtaaatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATAATAACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttattttcctctgagactgtttaaacttatttcaaaccctcattccaccttat-gggggaaaaaaataaaagtcagttctatgtaaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATCTGGAGGAGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATCAAATGGAAATTTCA s panTro5.chr17 16310056 681 + 83181570 gcaatatttcatatgctcaaatgctattcatattccctcttccatgaattatcttttcatctccattgtcaatttttctactgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAATAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TATGAGTTAC--TTGTATTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTATTCAaataata---ataataataa---------------aatGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgccacaataaatacatttactgctaatattttagttttcc-ttttagtg-ttttttcaaatatctgcatgtaaatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATAATAACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttattttcctctgagactgtttaaacttatttcaaaccctcattccaccttat-gggggaaaaaaataaaagtcagttctatgtaaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATCTGGAGGAGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATCAAATGGAAATTTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16214919 681 + 83442489 gcaatatttcatatgctcaaatgctattcatattccctcttccatgaattatcttttcatctccattgtcaatttttctactgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAATAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TATGAGTTAC--TTGTATTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTATTCAaataata---ataataataa---------------aatGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgccacaataaatacatttactgctaatattttagttttcc-ttttagtg-ttttttcaaatatctgcatgtaaatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATAATAACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttattttcctctgagactgtttaaacttatttcaaaccctcattccaccttat-gggggaaaaaaataaaagtcagttctatgtaaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATCTGGAGGAGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATCAAATGGAAATTTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050072 685 + 4267968 gcaatatttcatatgctcaaatgctattcatattccctcttccatgaattatcttttcatctccattgtcaatttttctactgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAATAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TACGAGTTACTTTTGTATTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTATTCAaataata---ataataataa---------------aatGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgccacaataaatacatttactgctaatattttagttttcc-ttttagtgtttttttcaaatatctgcatgtaaatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATAATAATAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttattttcctctgagactgcttaaacttatttcaaaccctcattccaccttatggggggaaaaaaataaaagtcagttctgtgtcaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATCTGGAGGAGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATCAAATGGCAATTTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2030337 681 - 2193130 gcaatatttcatatgctcaaatgctattcagattccc-cttccatgaattatcttttcatctccattgtcaatttttctattgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAATAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TATGAGTTAC--TTGTATTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTGTTCAaataata---ataataataa---------------aatGTTCACattataaatttcatacctacacactga-aaatttctaaaaaatacaaaaaa------agagaagaaaataaaaatcatttttcatgccacgataaatacatttactgctaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatgtaaatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATAATAACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttatttttctctgagactgcttaaacttatttcaaaccctcattccatcttat-gggggaaaaaaatagaagtcagctctatgtaaacacagaaatcattcaggatttttcCCTC----CCAACCTTCATCTGGAGGTGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATGCAATGGAAATTTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30102942 675 - 77216781 gcaatatttcatatgctcaaatgctatttatattccctcttccatgaattatcttttcatctccattgtcaatttttctattgggttgctggtctttct-ctttgattgatggaaatctttTGTTAAGTAGAAAATGAAAGC-------------------------AAGCTTTATC------------TATGAGTTAC--ATGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTGTTCAAATACTA---CTACTAATAA---------------AATGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgtcacaataaataca-ttactggtaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatatacatatttatattaatgtagataAGTATCCataaagatatatacat----------------atataaatatatgataACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttatttttctctgggactgcttaaacttatttcaaaccctcattccagcttat-gggggaaaaa-aaaaaagt----tctgtgtaaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTTATGTTTGAATGCAATGGAAATTTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28015203 676 - 80997621 gcaatatttcatatgctcaaatgctatttatattccctcttccatgaattatcttttcatctccattgtcaatttttctattgggttgctggtctttct-ctttgattgatggaaatctttTGTTAAGTAGAAAATGAAAGC-------------------------AAGCTTTATC------------TATGAGTTAC--ATGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTGTTCAAATACTA---CTACTAATAA---------------AATGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgtcacaataaataca-ttactggtaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatatacatatttatattaatgtagataAGTATCCataaagatatatacat----------------atataaatatatgataACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttatttttctctaggactgcttaaacttatttcaaaccctcattccagcttat-gggggaaaaataaaaaagt----tctgtgtaaacacagaaatcattcaggttttctcCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTTATGTTTGAATGCAATGGAAATTTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2072901 675 + 10377808 gcaatatttcatatgctcaagtgctatttatattccctcttccatgaattatcttttcatctccattgtcaatttttctattgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAGTAGAAAATGAAAGC-------------------------AATCTTTATC------------TATGAGTTAC--ATGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTGTTCAAATACTA---CTACTAATAA---------------AATGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgtcacaataaataca-ttactggtaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatgtacatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATGATAACATATATTAGTTACAAATTTCAAAATTCATGTTCTAAGATATGTTAAAAATATATAACTTTATTTTTCTCTGGGACTGCTTAAACTTATTTCAAACCCTCATTCCAGCTTAT-GCAGGGAAAA-AAAAAAGT----TCTGTGTAAACACAGAAATCATTCAGGTTTTCTCCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTTATGTTTGAATGCAATGGAAATTTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1957810 677 - 8458610 gcaatatttcatatgctcaaatgctatttatattccctcttccatgaattatcttttcatctccattgttaatttttctattgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAGTAGAAAATGAAAGC-------------------------AAGCTTTATC------------TATGAGTTAC--ATGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTGTTCAAATACTA---CTACTAATAA---------------AATGTTTACattataaatttcatacctacacacagc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgtcacaataaatacatttactggtaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatgtacatatttatatTAatgtagataagtatccataaagatatatacat----------------atataaatacatgataACAtatattagttacaaatttcaaaattcatgttctaagatacgttaaaaatatataactttatttttctctgggactgcttaaacttatttcaaaccctcattccagcttat-gggggaaaaaaataaaagt----tctgtgtaaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTTATGTTTGAATGCAATGGAAATTTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64903365 677 + 75148670 gcaatatttcatatgcttaaatgctatttatattccctcttccatgaattatcttttcatccccattgtcaatttttctattgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAGTAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TATGAGTTAC--GTGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACATTGTATTCAaataata---ataataataa---------------aatGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgtcataataaatacatttagtggtaatattttagctttcc-ttttagtg-ttttttcaaagatctgcatgtacatatttatatTAATGCAGATAAGTATCCATAAAGACATATACAT----------------ATATACATATATTATAACAtgtattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataacttaatttttctctgagactgcttaaacttatttcaaaccctcattccaacttat-gggggaaaaaaataaaagt----tctgtgtaaacacagaaatcattcaggatttctcCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTTATGTTTGAATGCAATGGAAATTTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2142829 677 + 4244037 gcaatatttcatatgctcaaatgctatttatattccctcttccatgaattatcttttcatctccattgtcaatttttccattgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAGTAGAAAATGAAAGC-------------------------AAGCTTTATC------------TATGAGTTAC--ATGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTGTTCAAATACTA---CTACTAATAA---------------AATGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcatttatcatgtcacaataaatacatttactggtaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatgtacatatttatatTAATGTAGATAAGTATCCATAAAGATATATACAT----------------ATATAAATATATGATAACATATATTAGTTACAAATTTCAAAATTCATGTTCTAAGATACGTTAAAAATATATAACTTTATTTTTCTCTGGGACTGCTTAAACTTATTTCAAACCCTCATTCCAGCTTAT-GGGGGAAAAAAATAAAAGT----TCTGTGTAAACACAGAAATCATTCAGGATTTCTCCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTTATGTTTGAATGCAATGGAAATTTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2165637 677 + 4569836 gcaatagttcatatgctcaaatactatttatattccctctttcatgaattatcttttcatgtccattgtcaatttttctcttgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAGTAGAAAATGAAAGC-------------------------AAGCTTTGTC------------TGTGAGTTAC--ATGTGTTGTTCCCAGGTTTTCATTTGCCTTTGACACTGTATTCAaataata---ataataataa---------------aatGTTTACattataaatttcatacctacacactgc-aaatttctaaaaaatac-aaaaa------agagaagaaaataaaaatcacttattatgtcacaataaatacatttactggtaatattttagttttcc-ttttagtg-ttttttcaaagatctgcatgtacatatttatatTAATGTAGATAAGTATCCATAAAGATATATACGT----------------ATATAAATATATGATAACAtatattagttacaaatttcaaaattcatgttctaagatatgttaaaaatatataactttatttttctctgagactgcttaaacttatttcaaaccctcattccagcttat-ggggggaaaaaataaaagt----tctatgtaaacgcagaaatcatttaggatttctcCCTC----CCAACCTTCATGTGGAGGTGGTATCTGAGCTTTGAGGAGTGTCATGTTTGAATGCAATGGAAATTTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122120 679 - 159171411 gcaatatttcatatgctcaaatgttattcatcttccctcttccatgaattatctcttcatctccattgtcaatttctctattgggttgctggtctttct-ctttgattgatggaaatcctttgttaaatagaaaatgaaagc-------------------------aagctttgtct-------atattatgagttac--atatattgtttccaggttgtcatttgcctttGACACTGTATTCACataattataataataataa---------------aatatttaCattataaatttcatacctacacactgc-aaatttctgaaaaatgc-aaaaa------tgagaagaaaataaaaatcatctatcattccacaataaatatatttagtgctaatattttagttttcc-ttttagtgttttttctaaagatctgcatgtaaatattgatatTAATGTAGATAAATATCCATACAGATATATACAA----------------ATATA--------ATAAC--AGATTagttacaaatttcaaaattcatgttctgagatatgttaaaaatatataactttatttttctctgagactgtctaaacttacttcaaaccctcattccagcttac-gggggaataa-ataaaagtcagttctgtgtaaactcagaaatcattcaggatttctcCCTC----TGTACCTCCACCTGGAAGTGGTGTCTGAGCTTCGAAGGGTGTTATGTTTGAATGCAATGGAAATTTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1832063 685 + 3513951 gcaatatttcatatgctcaaatgctattcatcttccctcttccatgaactatcttttcatctgcattgtcaatttctctattgggttgctggtctttct-cttggattgatggaaatcctttgttaaatagaaaatgaaagc-------------------------aagctttgtct-------atattatgaattac--atatattgtttccacgttgtcatttgcttttGACACTGTATTCACataattttaataataataa---------------aatatttaCattataaatttcatacctacacactgg-aaatttctgaaaaaggc-aaaaa------tgagaagaaaataaaaatgacctatcattccacaaaaaatatgtttagtgctaatattttagttttct-ttttagtg-tttttctaaagatctgcatgtaaatgttgatatTAatgtagataagtatccatacagatatatacat----------------atataaatat---ataACAtatattagttacaaatttcaaaattcatgttctgagatatgttaaaaatacgtaactttatttttctctgagactgcttaaacttacttcaaaccctcattccagcttac-ggggggataa-ataaaagtcagttctgtgtaaactcagaaatcattcaggatttttTCCTT----CAAACCTCCATCTGGAAGTGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATACAATGGAGATTTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1880348 687 + 1920343 gcaatatttcatatgctcaaatgctattcatcttccctcttccatgaactat-ttttcatctgcattgtcaatttctctattgagttgctggtctttct-ctttgattgacggaaatcctttgtTAAATAAAAAATGAAAGC-------------------------AAGCTTTGTCT-------ATATTATGAGTTAC--ATATATTGTTTCCAGGTTGTCATTTGCCTTTGACACTGTATTCACataattataataataataa---------------aataTTTACTttataaatttcatacctacacactgc-aaatttctgaaaaatgc-aaaaa------tgagaagaaaataaaaatcatctatcattccacaataaatatatttagtgctaatattttagttttcc-ttttaatgttttttctaaagatctgcatgtaaacattgatatTAATGTAGATAAGTATCCATACAGATATATACAT----------------ATATAAATATATAATAACAtatattagttacaaatttcaaaattcatgttctgagatatgttaaaaatatataactttatttttctctgagactgcttaaac-tacttcaaaccctcattccagcttac-gagggaataa-ataaaagtcagttctgtgtaaaatcagaaatcattcaggatttctcCCTC----CAAACCTCCATCTGGAAGTGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATGCAATGGAAATTTTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6997137 683 - 7032639 gcaatatttcatatgctcaaatgctattcatcttccttcttccatga---atcttttcatctccattgtcaatttctctattgggttgctggtctttct-ctttgattgatggaaatcctttgtTAAATAGAAAATGAAAGC-------------------------AAGCTTTGTCT-------ATATTATGAGTTAC--ATATATTGTTTCCAGGTTGTCATTTGTCTTTGACACTGTATTCGCATAATT---ATAATAATAA---------------AATATTTACATTATAAATTTCTTACCTACACACTGC-AAATTTCTGAaaaatgc-aaaaa------tgagaagaaaataaaaatcatctatcattccacaataaatatatttagtactaatattttagttttcc-ttttagtgttttttctaaagatctgcatgtaaatattgatatTAATGTAGAAAAGTATCCatacagatatatacat----------------atataaatatataataACAtatattagttacaaatttcaaaattcatgttctgagatatgttaaaaatatgtaactttatttttctctgagactgcttaaacttacttcaaaccctcattccagcttaa-gggggaataa-ataaaagtcagttctgtgtaaactcagaaatcattcaggatttctcCCTC----CAAACCTCCATCTGGAAGTGGTGTCTGAGCTTTGAGGGGTGTTATGTTTGAATGCAATGGAAATTTCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 5885361 618 - 28711273 GTAATAtttcatgtgtttgaaagttattcatgttcccttttctgtgaattttctttccatctccattgtgcatttttctattgtgatgttggtcttttt-ctctgattgatggaactcctttgtcaaacagaaaatcaaag-----------------------------ctttgtcccatttggatgttatgagttat--aaatattttccccagattgtaatttgcctttGACACCATATTCAAATAACA---ATAATAAT------------------ATGTTTGCATTGTAAATTTTATACCAGCATTCTGT-GAATTTCTGAaaaattt-aaaaa-------gagagaaaaataaagatcatctataatcccacaataaggatatttactgctaatactctaattttcc-tttcat---ttattctaaaaatatatgtaagaatattgatatgaatatAGATACATAT--ATATGGTTATATATAT----------------CTATAAA--------AACATACATTAGGCACAAATTTCTAAGTCCATGTTCTAAGGTATATTAAAGATATATCACTATCTTTTTCTTTAATACTGCTTAAAAT----------------------TTAT-------------------T----TCTCTGTAAACTCAAAAATTATTCAAGATTTCTCTCCCACCACCATCCTTCATCTGGAGGTGCTGTTTGAGTTTGGGGGA-------GCTTGGAC--------AGTCTCA i otoGar3.GL873537 n 9516 C 0 s canFam3.chr9 39636491 710 - 61074082 gtaatgttacatgtgcttaaattccatatatgttccctcttatataaattgtctttttgtatccattgcccatttttctgttgggtcattggtctttttactttggttgataggaatgctttgtgaattagaaaataaaagcttgaaaataaaataaaataaaataaaagcttggtc-------tgtattatgatttat--aaatatttttctcaaactgtcattagcctttGATACTATAATTAaataata---ataataataataataataataaaataatGTTTACattatgaacttcatacctgtttattgtggaatttctggaaaatac-aaaaaattaaaagcaagaaaattaaaattcatccataaccctacaacaaagatatt--ctgctaatattctagattccctttttagcactttttctaaagacttacatgtaaatattgacatGGCTGTAGGTAGCtatacataaacatatacatgtataagcatgtataagcatatatatatatatatatatatatCAGGTACAAATTTCTAAATCCATGTTCCAAA---------------------CTATCTTTCTCTAAGACTGCTTAAACCTATTTCCAACCTTCATTCCAGCTTGT-GGGGGAAGAA-----AAGTCAGTTCTGTATAAACTCAGAAATCTCTCAGAATTTTTCCCTC---CCCATCCTTCATCTGGAAATGGCATCTGAGTTTTGTGTG-------GTTTGGACAATATTG-------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 35916067 2667 - 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I a score=533923.000000 s hg38.chr17_GL383564v2_alt 121618 39 + 133151 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGAAT s panTro5.chr17 16310737 39 + 83181570 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGggcat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215600 39 + 83442489 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGggcat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050757 39 + 4267968 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031018 39 - 2193130 TAGCCTTCTAGAGGCTGGCAACAAGTTCATGGTGggcat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30103617 39 - 77216781 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28015879 39 - 80997621 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073576 39 + 10377808 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958487 39 - 8458610 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904042 39 + 75148670 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143506 39 + 4244037 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166314 39 + 4569836 TAGCCTTCAAGAGGCTGGCAACAGGTTCATGGTGGGCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122799 39 - 159171411 TAGCCTTCAAGAGGCTGGCAGTAGGTTCATAGTGggcat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1832748 39 + 3513951 TAGCCTTCAAGAGGCTGGCAGTAGGTTCATGGTGggcat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1881035 39 + 1920343 TGGCCTTCAAGAGGCTGGCAGTAGGTTCATGGTGGGCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6997820 39 - 7032639 TAGCCTTCAAGAGGCTGGCAGTAGGTTCATGGTGGGCAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 29983596 39 + 65901067 TAGCATTCAAGAGGGTGACAACAGGTTCACAGTGGGCAT i micMur3.chr16 n 2667 C 0 s otoGar3.GL873537 5885979 39 - 28711273 TAGCATTAAAGAGGGAGACAAGAGGTTCACAGCAGGCAT i otoGar3.GL873537 C 0 I 138 s canFam3.chr9 39637201 39 - 61074082 CAGCCTTGAAGAGAGTAATAATTGGCTCCCAGTGGGCAT i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e dasNov3.JH570468 423313 8902 - 852752 I a score=257551.000000 s hg38.chr17_GL383564v2_alt 121657 24 + 133151 TTGCT-----------------------------------------------GAAATATACATGGTTCTCT s panTro5.chr17 16310776 24 + 83181570 ttgct-----------------------------------------------gaaatatacatggttctct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215639 24 + 83442489 ttgct-----------------------------------------------gaaatatacatggttctct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050796 24 + 4267968 TTGCT-----------------------------------------------GAAATATACATGGTTCTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031057 24 - 2193130 ttgct-----------------------------------------------gaaatatacatagttctct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30103656 24 - 77216781 CTACT-----------------------------------------------GAAGTATACATGGCCCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28015918 24 - 80997621 CTACT-----------------------------------------------GAAGTATACATGGCCCTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073615 24 + 10377808 CTACT-----------------------------------------------GAAGTATACATGGCCCTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958526 24 - 8458610 CTACT-----------------------------------------------GAAGTATACATGGCCCTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904081 24 + 75148670 CTACT-----------------------------------------------GAAGTATACATGGCCCTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143545 24 + 4244037 CTACT-----------------------------------------------GAAGTATACATGGCCCTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166353 24 + 4569836 CTACT-----------------------------------------------GAAGTATACGTGGCCCTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122838 24 - 159171411 ctgct-----------------------------------------------gaaatatacgtgatcctct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1832787 24 + 3513951 ctgct-----------------------------------------------gaaatatacgtgatcttct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1881074 24 + 1920343 CTGCT-----------------------------------------------GAAATATACAGGATCCTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6997859 24 - 7032639 CTGCT-----------------------------------------------GAAATACACATGATCCTCT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 29983635 24 + 65901067 CTGCT-----------------------------------------------GAAATATCCACGGTCCTCT i micMur3.chr16 C 0 I 73 s otoGar3.GL873537 5886156 71 - 28711273 ttactttgtacatgagaaaaatgaagctcaTGGGCATCAATTCCTTTAACTAGAAAGGTGCATGGTCCTCT i otoGar3.GL873537 I 138 C 0 s canFam3.chr9 39637240 24 - 61074082 CCACT-----------------------------------------------GAAAAACACATGGTTCTCT i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e dasNov3.JH570468 423313 8902 - 852752 I a score=571567.000000 s hg38.chr17_GL383564v2_alt 121681 58 + 133151 CTTACT----CTTGGCCCTATCATCCCTCTC--------ATGGCATCAACCAAGATATTAGAGTTCT--------TTT s panTro5.chr17 16310800 58 + 83181570 cttact----cttggccctatcatccctctc--------atggcatcaactaagatATTAGAGTTCT--------TTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215663 58 + 83442489 cttact----cttggccctatcatccctctc--------atggcatcaactaagatATTAGAGTTCT--------TTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050820 62 + 4267968 CTTACTCTTGCTTGGCCCTATCATCCCTCTC--------ATGGTATCAACTAAGATATTAGAGTTGT--------TTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031081 66 - 2193130 cttact----cttggccccatcatccctctc--------atggcatcaactaaggtATTAGAGTTCTCTCTGATCTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30103680 66 - 77216781 CTTACT----CTTGGCCCAATCATCCCTCTC--------ATGGCATCAACTAAGATATTGGAGTTCTCTCTGATCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28015942 66 - 80997621 CTTACT----CTTGGCCCAATCATCCCTCTC--------ATGGCATCAACTAAGATATTGGAGTTCTCTCTGATCTCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073639 66 + 10377808 CTTACT----CTTGGCCCAATCATCCCTCTC--------ATGGCATCAACTAAGATATTGGAGTTCTCTCTGATCTCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958550 66 - 8458610 CTTACT----CTTGGCCCAATCATCCCTCTC--------ATGGCATCAACTAAGATATTGGAGTTCTCTCTGATCTCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904105 66 + 75148670 CTTACT----CTTGGCCCAATCATCCCTCTC--------ATGGCATCAACTAAGATATTGGAGTTCTCTCTGATCTCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143569 66 + 4244037 CTTACT----CTTGGCCCAATCATCCCTCTC--------ATGGCATCAACTAAGATATTGGAGTTCTCTCTGATCTCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166377 66 + 4569836 CTTACT----CTTGGCCCAATCATCCCTCCC--------ATGGCATCAACTAAGATACTGAAGTTCTCTCTGATCTCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122862 58 - 159171411 cttatt----cttggcccaatcatccctctc--------atgtcatcaactaagacactggatttctctt-------- i calJac3.chr5 C 0 I 8 s saiBol1.JH378271 1832811 58 + 3513951 cttatt----cttggctcaatcgtccctctc--------atggcatcaactaagatactggagttctctc-------- i saiBol1.JH378271 C 0 I 8 s cebCap1.NW_016107730v1 1881098 58 + 1920343 CTTATT----CTTGGCCCAATCATCCCTCTC--------ATGTCATCAACTAAGATACTGGAGTTCTCTC-------- i cebCap1.NW_016107730v1 C 0 I 10 s aotNan1.NW_018502359v1 6997883 58 - 7032639 CTTATT----CTTGGCCCAATCGTCCCTCTC--------ATGTCATCGACTAAGACATTGGAGTTCTCGC-------- i aotNan1.NW_018502359v1 C 0 I 8 s otoGar3.GL873537 5886227 60 - 28711273 CTAACT----CTCTCTC------TCCCTCTCATTGTGCTATGGTATCAACTGAGATACTGGGGTTCTCCC-------- i otoGar3.GL873537 C 0 I 8 s canFam3.chr9 39637264 56 - 61074082 CTTATT----CTTGGTC--ACCATTCTCCTT--------GTGATGGCACCTGAAATATT---TTTCTCCATGT----- i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983659 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I a score=60026.000000 s hg38.chr17_GL383564v2_alt 121739 19 + 133151 AGTCCACAAAAGAACTACA s panTro5.chr17 16310858 19 + 83181570 AGTCCACAAAAGAACTACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215721 19 + 83442489 AGTCCACAAAAGAACTACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050882 19 + 4267968 AGTCCACAAAAGAACTACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031147 10 - 2193130 AGTCCACCAA--------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30103746 10 - 77216781 AGTTCACAAA--------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016008 10 - 80997621 AGTTCACAAA--------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073705 10 + 10377808 AGTTCACAAA--------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958616 10 - 8458610 AGTTCACAAA--------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904171 10 + 75148670 AGTTCACAAG--------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143635 10 + 4244037 AGTTCACAAA--------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166443 10 + 4569836 AGTTCACACA--------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122928 10 - 159171411 agtcCACAAG--------- i calJac3.chr5 I 8 I 7 s saiBol1.JH378271 1832877 10 + 3513951 agtcCACAAA--------- i saiBol1.JH378271 I 8 I 7 s aotNan1.NW_018502359v1 6997949 10 - 7032639 AGTCCACAAA--------- i aotNan1.NW_018502359v1 I 8 C 0 s otoGar3.GL873537 5886295 10 - 28711273 AGTCCATGAA--------- i otoGar3.GL873537 I 8 I 1 s canFam3.chr9 39637320 9 - 61074082 TCTCCATAA---------- i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983659 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e cebCap1.NW_016107730v1 1881156 10 + 1920343 I a score=-7056.000000 s hg38.chr17_GL383564v2_alt 121758 9 + 133151 TCCTCTACG s panTro5.chr17 16310877 9 + 83181570 TCCTCTACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215740 9 + 83442489 TCCTCTACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050901 9 + 4267968 TCCTCTACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031157 1 - 2193130 --------T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30103756 1 - 77216781 --------T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016018 1 - 80997621 --------T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073715 1 + 10377808 --------T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958626 1 - 8458610 --------T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904181 1 + 75148670 --------T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143645 1 + 4244037 --------T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166453 1 + 4569836 --------T i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1881166 9 + 1920343 TCCACAAAT i cebCap1.NW_016107730v1 I 10 C 0 s aotNan1.NW_018502359v1 6997959 1 - 7032639 --------T i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 39637329 1 - 61074082 --------T i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983659 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886305 1 - 28711273 I e saiBol1.JH378271 1832887 7 + 3513951 I e calJac3.chr5 46122938 7 - 159171411 I a score=3141280.000000 s hg38.chr17_GL383564v2_alt 121767 244 + 133151 TCTACATCCTCT---------CATTACCCCATCCAGGCGGCTAGATGGACCTGGTCATCTGACCACCCACTCTCCTGCATTGCAAAAGTCTACTTTGAATTGTATAAGCTAAGCATTGACCTAAGTCATTCTCTCTGCATTTCTACAGTAATAACCCTACCCTGGGGGCAGTAAATATAAAAAGTCCCTACTGCTGCCCAATTTGTGTGGAAAGACCAACAGTGAAATAAATTGCAGAAGAAAAATAACACCA s panTro5.chr17 16310886 244 + 83181570 TCTACATCCTCT---------CATTACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCTCCTGCATTGcaaaagtctactttgaattgtataagctaagcattgacctaagtcattctctctgcatttctacagtaataaccctaccctgggggcagtaaatataaaaagtccctactactgcccaatttgtgtggaaagaccaacagtgaaagaaattgcagaagaaaaataacacca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215749 244 + 83442489 TCTACATCCTCT---------CATTACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCTCCTGCATTGcaaaagtctactttgaattgtataagctaagcattgacctaagtcattctctctgcatttctacagtaataaccctaccctgggggcagtaaatataaaaagtccctactactgcccaatttgtgtggaaagaccaacagtgaaagaaattgcagaagaaaaataacacca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4050910 244 + 4267968 TCTACATCCTCT---------CATTACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCTCCTGCATTGCAAAAGTCTACTTTGAATTGTATAAGCTAAGCATTGACCTAAGTCATTCTCTCTGCATTTCTACAGTAATAACCCTACCCTGGGGGCAGCAAATATAAAAAGTCCCTACTGCTGCCCAATTTGTGTGGAAAGACCAACAGTGAAAGAAATTGCAGAAGAAAAATAACACCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031158 244 - 2193130 TCTACATCCTCT---------CCTTACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATtgcaaaagtctactttgaattgtataagctaagcattgacctaagtcattctctctgcatttctacagtaataactctaccctgggtgcagTAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTGTGGAAAGACCAACAGTGAAAGAAATTGCAGAAGAAAAATGACACCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30103757 243 - 77216781 TCTGCATTCTCT---------CATCACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATtgcaaaagtctactttgaattgcataagctaagcattgacctaagtcattctctctgcatttccacagtaataaccttaccctggggGCAGCAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTATGGAAAGA-CAACAGTGAAAGAAATTGCAGAAGAAAAATAACACCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016019 243 - 80997621 TCTGCATTCTCT---------CATCACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATTGCAAAAGTCTACTTTGAATTGCATAAGCTAAGCATTGACCTAAGTCATTCTCTCTGCATTTCCACAGTAATAACCTTACCCTGGGGGCAGCAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTATGGAAAGA-CAACAGTGAAAGAAATTGCAGAAGAAAAATAACACCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073716 243 + 10377808 TCTGCATTCTCT---------CATCACCCCATCCGGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATtgcaaaagtctactttgaattgcataagctaagcattgacctaagtcattctctctgcatttccacagtaataaccttaccctggggGCAGCAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTATGGAAAGA-CAACAGTGAAAGAAATTGCAGAAGAAAAATAACACCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958627 243 - 8458610 TCTGCATTCTCT---------CATCACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATTGcaaaagtctactttgaattgcataagctaagcattgacctaagtcattctctctgcatttccacagtaataaccttaccctgggggcaGCAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTATGGAAAGA-CAATAGTGAAAGAAATTGCAGAAGAAAAATAACACCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904182 243 + 75148670 TCTGCATCCTCT---------CATCACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATTGCAAAAGTCTACTTCGAATTGCATAAGCTAAGCATTGACCTAAGTCATTCTCTCTGCATTTCCACAGTAATAACCTTACCCTGGGGGCAACAAATACAAAAAGTCCCCACTGCTGCCCAATTTGTGTGGAAAGA-CAACAGTGAAAGAAACTGCAGAAGAAAAATAACACCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143646 243 + 4244037 TCTACATTCTCT---------CATCACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATtgcaaaagtctactttgaattgcataagctaagcattgacctaagtcattctctctgcatttccacagtaataaccttaccctggggGCAGCAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTATGGAAAGA-CAATAGTGAAAGAAATTGCAGAAGAAAAATAACACCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166454 244 + 4569836 TCTACATTCTCT---------CATCACCCCATCCAGGAGGCTAGATGGACCTGGTCATCTGACCACCCACTCCCCTGCATtgcaaaagtctactttgaattgcataagctaagcattgacctaagtcattctctctgcatttctacagtaataaccttaccctggggGCAGCAAATATAAAAAGTCCCCACTGCTGCCCAATTTGTGTGGAAAGACCAACAGTGAAAGAAATTGCAGAAGGAAAATAACACCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46122945 238 - 159171411 ------CCCTCC---------CATCACCCCATTCAGGAGGCTGGATGGACCCAGTCATCTGACCACTCACTCTCCTGCActacaaaagtctactttgagttgcataagctaagcattgacctaagtcattctctctgtatttctatagtaataactctaacctaggggcagtgaatATAAAAAGTCCCCACTGTTGCCCAATTTATGTGGAAAGACCAACAGTGAAAGAAATTGCAGAAGGAAAATAACACCA i calJac3.chr5 I 7 C 0 s saiBol1.JH378271 1832894 247 + 3513951 ------TCCTCCCATCCTCTGCATCACCCCATTCAGGAGGCTAGATGGTCCCAGTCATCTGACCACTCACTCTCCCGCACTACAAAAGTCTACTTTGAGTTGCATAAGCTAAGCATTGACCTAAGTCACTCTCTCTGTATTTCTATAGTAATAACTCTAACCTAGGGGCAGTGAATATAAAAAGTCCCCACTGCTGCCCAATTTGTGTGGAAAGACCAACAGTGAAAGAAATTGCAGAAGGAAAATAACACCA i saiBol1.JH378271 I 7 C 0 s cebCap1.NW_016107730v1 1881175 244 + 1920343 TCTGCATCCTCC---------CATCACCCCATTCAGGAGGCTGGATGGACCCAGTCATCTGACCACTCACTCTCCTGCActacaaaagtctactttgaattgcataagctaagcattgacctaaatcattctctccgtatttctatagtaataactctaacctagaggcagtgaatATAAAAAGTCCCCATCGCTACCCAATTTGTGTGGAAAGACCAACAGTGAAAGAAATTGCAGAAGGAAAATAATACCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6997960 244 - 7032639 TCTGCATCCTCC---------CATCACCCCATTCAGGAGGCTAGATGGGCCCAGTCATCTGACCACTCACTCTCCtgcgctacaaaagtctactttgaattgcataagctaaacattgacctaagtcattctctctgtatttctatagtaagaactctaacctaggggcagtgaatataaaaaggccccactgctgcccaatttgtagggaaagaccaacagtgaaagaaactgcagaaggaaaataacagca i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 29983732 242 + 65901067 TCTGCATCCTCC---------CATCACCCCATCCAGGAGGCTGGCAGGTCCTGGCCATCTGATCACCCACTCTCCTCCACCACAAAGGTCTACTCTGAATTGCATAAGCTAACCATTGACGTAAGTCATTCTTTCTGCATTTCCACAGTAACAAGCCTACGCTAAGGGCAGTGAATA--TAGAGTCCCCACTGCTGCCCAAGACATGAGCAAAGACCAGCAGTGGAAGAAATTGCAGAAGAAAAATAACACCA i micMur3.chr16 I 73 n 73 s otoGar3.GL873537 5886306 236 - 28711273 TCTGCATCCTCC---------TATCACCCCACTCGGGAGGCTGGAAGGTCCTGGGTATCTGACCACCCATTCTGCACTGTCCCAAAGGTCTACTTGGAATT-TATACATTAAGCCTTGACTTAAGTCATTTTCTCTGCATTTCTACAGTAATAATCCTACCCTGAGCACAGTGAATA-GGAAAGTCCCCAGTGCTGCCCAAGTCATGAGCAAAAACCAACAGTGAAAGAAATTACAGAAGAGAAACA------ i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 39637330 240 - 61074082 TCTGCATCCTTC---------CATC-CTCCCTCCAGGAGTCCCAA-GGCCCTCTCTGTCTGACCAGCAACTGTCCTCCAGCACAGAGATCTATTTTGAATTGCATGTACTAAGCACTGACTTGGCTCATTCTCTCTACATTTCTAAAGTAATAACCCTACCCTGGGGGCAGTGACTATAGAAATACCCCACTGATGCCCGAGTCATGAGAAAAGAGTAGCAGGGAAAGAAACTCCAGAATAAAGATAAGAC-- i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e dasNov3.JH570468 423313 8902 - 852752 I a score=1806773.000000 s hg38.chr17_GL383564v2_alt 122011 163 + 133151 CC---ATGAGGACTTCAAGTCCTCATCATGACATGTACATTTACACAATTGAA--ATCATAGTGTATAATTTGAGTTGCACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATGAATTGTTAAA---TATAAAAG-----TATGATAATTTATATTTT-CAAGTTG s panTro5.chr17 16311130 163 + 83181570 cc---atgaggacttcaagTCCTCATCATGACATGTACATTTACACAATTGAA--ATCATAGTGTATAATTTGAGTTGCACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATGAATTGTTAAA---TATAAAAG-----TGTGATAATTTATACTTT-CAAGTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16215993 163 + 83442489 cc---atgaggacttcaagTCCTCATCATGACATGTACATTTACACAATTGAA--ATCATAGTGTATAATTTGAGTTGCACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATGAATTGTTAAA---TATAAAAG-----TGTGATAATTTATACTTT-CAAGTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051154 163 + 4267968 CC---ATGAGGACTTCAAGTCCTCATCATGACATGTACATTTACACAATTGAA--ATCATAGTGTATAATTTGAGTTGCACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATGAATTGTTAAA---TATAAAAG-----TGTGATAATTTATATTTT-CAAGTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031402 166 - 2193130 CCATGATGAGGACTTCAAGTCCTCATCATGACATGTACATTTACACAATAGAA--ATCATAGTGTATAATTTGAGTTGCACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATGAATTGTTAAA---TATAGAAG-----TTTGATAATTTGTATTTT-CAAGTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30104000 161 - 77216781 -----GTGAATACTTCAAGTCCTCATCATGACATGTACATTTACACAATTGAA--ATCACAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATCAATTGTTAAA---TATAAAAG-----TTTGATAATTTATATTTT-CAAGTTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016262 161 - 80997621 -----GTGAATACTTCAAGTCCTCATCATGACATGTACATTTACACAATTGAA--ATCACAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATCAATTGTTAAA---TATAAAAG-----TTTGATAATTTATATTTT-CAAGTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2073959 161 + 10377808 -----GTGAATACTTCAAGTTCTCATCATGACATGTACATTTACACAATTGAA--ATCACAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAAGGCTCATGAGTATATCAATTGTTAAA---TATAAAAG-----TTTGATAATTTATATTTT-CAAGTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1958870 161 - 8458610 -----GTGAATACTTCAAGTCCTCATCATGACATGTACGTTTACACAATTGAA--ATCACAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATCAATTGTTAAA---TATAAAAG-----TTTGATAATTTATATTTT-CAAGTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904425 161 + 75148670 -----GTGAATACTTCAAGTCCTCATCATGACATGTACATTTACACAATTGAA--ATCATAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATCAATTGTTAAA---CATAAAAG-----TTTGATAATGTATATTTT-CAAGTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2143889 161 + 4244037 -----GTGAATACTTCAAGTCCTCATCATGACATGTACATTTACACAATTGAA--ATCACAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATCAATTGTTAAA---TATAAAAG-----TTTGATAATTTATATTTT-CAAGTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166698 161 + 4569836 -----GCGAATACTTCAAGTCCTCATCATGGCATGTACATTTACACAATTGAA--ATCATAGTGTATAATTTGAGTTGTACACTGAATGTTGTACTTAATCTGAGTAAATGCTCATGAGTATATCAATTGTTAAC---TATAAAAG-----TTTGATAATTTATATTTT-CAAGTTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123183 162 - 159171411 -----GTGAATACTTCAAGTCCTCATCATGACATGTACCTTCACACAATTGAA--ATCATAGTGTATAATTTGAGCTGTACACTGAATGTTGTATTTAATCTGAGGAAATGCTTGTGAGtatataaattgttaaa---tataaaag-----tttgataatttatattttCCAAGTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833141 160 + 3513951 -----ATGAATACTTCAAGTCCTCATCATGACATGTACCTTTACACAATTGAA--ATTATAGTG--TAATTTGAGCTGTACACTGAATGTTGTATTTAATCTGAGGAAATGCTTATGAGtatataaattgttaaa---tataaaag-----tttgataatttatattttCCAAGTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1881419 161 + 1920343 -----GTGAATACTT-AAGTCCTCATCATGACATGTACCTTTACACAATTGAA--ATCATAGTGTATAATTTGAGCTGTACACTGAATGTTGCATTTAATCTGAGGAAATTCTTATGAGTATATAAATTGTTGAA---TATAAAAG-----TTTGCTAATTTATATTTTCCAAGTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998204 162 - 7032639 -----gtgaatacttcaagTCCTCATCATGACATGTACCTTTACACAATTGAA--ATCGTAGTGTATAATTTGAGCTGCACACTGAATGTTGTATTTAATCTGAGGAAATGCTGCTGAGTATATAAATTGTTAAA---TATAAAAG-----TTCCATAATTTATATTTTCCAAGTTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 5886542 149 - 28711273 --------------------CCTCATCCTGACACTACTCTTTGTACTATTGAA--ACCACAGTGTACAATTTGGGTTGTACAATAAATACAGTACTTAGCCTGAGAAAATGCTCATGAGTCTATTAATTACTAACTATTATAAGCA-----CCTGAGAAATTGTATTTT-CAAGCTG i otoGar3.GL873537 C 0 n 0 s canFam3.chr9 39637570 170 - 61074082 TC---TTGGATACTCTAGAGTTTCATCTTGACAACTATTTTTACAAAATTGAAATATCAGACTGTGTAAATTGATTTCTACACCAAATATTATGCTTCATCTGAGAATATGCTCATGAAGATGTTGATTGTTAAA---TATAATAAAACTCTGAGAGAAATTATATTTT-CAAGTTG i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I a score=12376.000000 s hg38.chr17_GL383564v2_alt 122174 1 + 133151 T s panTro5.chr17 16311293 1 + 83181570 T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216156 1 + 83442489 T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051317 1 + 4267968 T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031568 1 - 2193130 T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30104161 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016423 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2074120 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959031 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904586 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144050 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166859 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123345 1 - 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833301 1 + 3513951 T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1881580 1 + 1920343 T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998366 1 - 7032639 T i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 39637740 1 - 61074082 T i canFam3.chr9 C 0 n 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886691 0 - 28711273 I a score=542730.000000 s hg38.chr17_GL383564v2_alt 122175 51 + 133151 TCAAACAACCAagtgttcaatatgt--------atacatttatatttactcatttaatc s panTro5.chr17 16311294 51 + 83181570 TCAAACAACCAagtgttcaatatgt--------atacatttatatttactcatttaatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216157 51 + 83442489 TCAAACAACCAagtgttcaatatgt--------atacatttatatttactcatttaatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051318 51 + 4267968 TCAAACAACCAagtgttcaatatgt--------atacatttatatttactcatttaatc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031569 51 - 2193130 TCAAACAACCAAGTGTTCAATATGT--------ATACATTtatatttactaatttaatc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30104162 51 - 77216781 TCAAACAAccaagtgttcaatatgt--------attcatttatatttactcctttaatc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016424 51 - 80997621 TCAAACAAccaagtgttcaatatgt--------atacatttatatttactcctttaatc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2074121 51 + 10377808 TCAAACAAccaagtgttcaatatgt--------atacatttatatttactcctttaatc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959032 51 - 8458610 TCAAACAACCAAGTGTTCAATATGT--------ATACATTtatatttactcatttaatc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904587 51 + 75148670 TCAAACAACCAAGTGTTCAATATGT--------ATACATTtatatttactcatttaatc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144051 51 + 4244037 TCAAACAACCAAGTGCTCAATATGT--------Atacatttatatttactcatttaatc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2166860 51 + 4569836 TCAAACAACCAagtgttcaatatgt--------atacatttatatttactcatttaatc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123346 50 - 159171411 TCAATCAACCAAGTGTTCAATATGT--------Atacatttata-tcactcatttaatc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833302 51 + 3513951 TCAATCAATCAAGTGTTCAATATGT--------ATACATTtatattcactcatttaatc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1881581 51 + 1920343 TCAATCAACCAAATGTTCAATATGT--------ATACATTTATATTCACTCATTTAATC i cebCap1.NW_016107730v1 C 0 I 424 s aotNan1.NW_018502359v1 6998367 51 - 7032639 TCAATCAACCAAGTGTTCAATATGT--------ATACATTtatattcactcatttaatc i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21438574 56 + 61074082 tcaaataa-catgtgcccaatatactgttctaagtac-tttata-taactcatttaata i canFam3.chr9 I 10173 I 3 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886691 0 - 28711273 I a score=2351802.000000 s hg38.chr17_GL383564v2_alt 122226 220 + 133151 aaaacagctctacgacactgctactattattatcctaatttctgttttatagatgaagaaattcaggtacacaggggttaagtaattATGGGAGCAG-CGAGGGGGTGGGTGAGAggcaggagaactgaatggtgagacattggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT s panTro5.chr17 16311345 220 + 83181570 aaaacagctctatgacactgccactattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattATGGGAGCAG-CGAGGGGGTGGGTGAGAggcaggagaactgaatggtgagacattggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216208 220 + 83442489 aaaacagctctatgacactgccactattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattATGGGAGCAG-CGAGGGGGTGGGTGAGAggcaggagaactgaatggtgagacattggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051369 220 + 4267968 aaaacagctctatgacactgccactattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattATGGGAGCAG-CGAGGGGGTGGGTGAGAggcaggagaactgaatggtgagacattggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031620 220 - 2193130 aaaacaactctatgaaactggcactattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattGTGGGAGCAG-TGAGGGGGTGGGTGAGAggcaggagaactgaatggtgagactttggaagatgaggaagactttctact-----cttctgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30104213 220 - 77216781 aaaacagctctatgaaactgtcaccattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaaTCACGGGAGCAG-TGAGGGAGCGGGTGAGAggcaggagaactgaatggtgagccactggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28016475 220 - 80997621 aaaacagctctatgaaactgtcaccattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattACGGGAGCAG-TGAGGGAGCGGGTGAGAggcaggagaactgaatggtgagccactggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i macFas5.chr16 C 0 I 321 s macNem1.NW_012014910v1 2074172 220 + 10377808 aaaacagctctatgaaactgtcaccattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattACGGGAGCAG-TGAGGGAGCGGGTGAGAggcaggagaactgaatggtgagccactggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i macNem1.NW_012014910v1 C 0 I 338 s cerAty1.NW_012006043v1 1959083 220 - 8458610 aaaacaactctatgaaactgtcaccattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattATGGGAGCAG-TGAGGGAGCGGGTGAGAggcaggagaactgaatggtgagccactggaagatgaggaagactttctact-----cttttgtaccttttatcctaggaatgcttgacctcttattaaaataaataaaTAT i cerAty1.NW_012006043v1 C 0 I 313 s chlSab2.chr16 64904638 220 + 75148670 aaaacagctctatgaaactgtcaccattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattACGGGAGCAG-TGAGGGAGTGGGTGAGAggcaggagaactgaatggtgagccactggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144102 216 + 4244037 aaaacagctctatgaaactgtt----ttattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattACGGGAGCAG-TGAGGGAGTGGGTGAGAggcaggagaactgaatggtgagccactggaagatgaggaagactttctact-----cttttgtaccttttatcctgggaatgcttgacctcttattaaaataaataaaTAT i manLeu1.NW_012106252v1 C 0 I 341 s colAng1.NW_012122154v1 2166911 219 + 4569836 aaaacagctctatgaaactggcaccattattatcctaatttctgttttatagatgaagaaattcaggtacagaggggttaagtaattACGGGAGCAG-TGAGGGAGTGGGTGAGAGGCAGTAGAACTGAATGGTGAGCCATTGGAAGATGAGGAAGACTTTCTACT-----CTTTTGTATCTTTTATCCTGGGAATGC-TGACCTCTTATTAAAATAAATAAATAC i colAng1.NW_012122154v1 C 0 I 296 s calJac3.chr5 46123396 219 - 159171411 aaaacgaccctatgaaactggcactattattattttaatttctatttcatagatgaagaaattcaggtacaaaggggttaagtaattATGGGAACAG-TGAGGGGGTGGATGAGAGGCAGGAGAACTGAATGGTGAGACATTGGAAGATGAACTAAACTTTCTA-T-----CTTTTGTACCTTTTACCCTGGGAATGCTTGACCTCTTATTAAAATAAATAAATAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833353 220 + 3513951 aaaacaaccctatgaaactggcagtattattattttaatttctattttatagatgaagaaattcaggtacaaaggggttaagtaattATGGGAACAG-CGAAGGGGCGGGTGAGAGGCAGGAGAACTGAATGGTGAGACATCGGAAGATGAACTAGACTTTCTAGT-----CTTTGGTACCTTTTACCCTGGGAATGCTTTACCTCTTATTAAAATAAATAAATAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882056 220 + 1920343 aaaacaaccctatgaaactggtactattattattttaatttctattttatagatgaagaaattcaggtacaaaggggttaagtaattATGGGAACAG-CGAGGGGGTGGGTGAGAggcaggagaactgaatggtgagacatgggaagatgaactagactttttagt-----cttttgtaccttttaccctgggaatgcttgacctcttattaaaataaataaaTAT i cebCap1.NW_016107730v1 I 424 C 0 s aotNan1.NW_018502359v1 6998418 217 - 7032639 aaaacaaccctatgaaactggcac---tattattttaatttctattttatagatgaagaaattcaggtacaaaggggttatgtaattATGGGAACAG-TGAGGGAGTGGGTGAGAGGCAGGAGAACTGAATGGTGAGACATTGGAAGATGAACTAGACTTTCTAGT-----CTTTTGTACCTTTTACCCTGGGAATGCTTGGCCTCTTATTAAAATAAATAAATAT i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21438633 214 + 61074082 aaaacag-tccatgagagtggcactcttattatcataattaccattttatagatgagaaaattcaggcacagaggggcgaaatgaAATTGAGAGCAGAGGATAGGGTGGGTAAAAggcaagagaactgactggtg-gacacagaaagaggag--agaattttcactgcacacttttcaggcctttctcatgggaatgcatcacctatcgttaaaagaA-------- i canFam3.chr9 I 3 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886691 0 - 28711273 I a score=10500.000000 s hg38.chr17_GL383564v2_alt 122446 1 + 133151 G s panTro5.chr17 16311565 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216428 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051589 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031840 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30104433 1 - 77216781 G i rheMac8.chr16 C 0 I 950 s macFas5.chr16 28017016 1 - 80997621 g i macFas5.chr16 I 321 C 0 s macNem1.NW_012014910v1 2074730 1 + 10377808 g i macNem1.NW_012014910v1 I 338 C 0 s cerAty1.NW_012006043v1 1959616 1 - 8458610 g i cerAty1.NW_012006043v1 I 313 C 0 s manLeu1.NW_012106252v1 2144659 1 + 4244037 G i manLeu1.NW_012106252v1 I 341 C 0 s colAng1.NW_012122154v1 2167426 1 + 4569836 g i colAng1.NW_012122154v1 I 296 C 0 s calJac3.chr5 46123615 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833573 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882276 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998635 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21438847 0 + 61074082 C e otoGar3.GL873537 5886691 0 - 28711273 I e chlSab2.chr16 64904858 0 + 75148670 C a score=198328.000000 s hg38.chr17_GL383564v2_alt 122447 29 + 133151 TAAAAGGATGTGTCggccgggtgcagtgg s panTro5.chr17 16311566 29 + 83181570 TAAAAGGATGTGTCggccgggtgcagtgg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216429 29 + 83442489 TAAAAGGATGTGTCggccgggtgcagtgg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051590 29 + 4267968 TAAAAGGATGTGTCggctcggtgcagtgg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031841 29 - 2193130 TAAAAGGACGTGTCggctgggtgtggtgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28017017 29 - 80997621 taaaagaaTGTGTCggctgggcgtggtgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2074731 29 + 10377808 taaAAGAATGTGTCggctgggcgtggtgg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959617 29 - 8458610 taaaAGGATGTGTTggctgggcgtggtgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904858 16 + 75148670 -------------Gggctgggcatggtgg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144660 29 + 4244037 TAAAAGAATGTGTCggctgggcatggtgg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167427 29 + 4569836 taaaATGATGTGTCggctgggcgcggtgg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123616 29 - 159171411 TAACAGGACCTGTCAgctgggcatggtgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833574 29 + 3513951 TAACAGGACCTGTCggctgggtgtggtgg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882277 29 + 1920343 TAACAGGACCTGTCggctgggtgtggtgg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998636 29 - 7032639 TAACAGAACCTGTCAgctgggcgtggtgg i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21438847 19 + 61074082 ----------TGAgaggcacctgcggtgg i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886691 0 - 28711273 I e rheMac8.chr16 30104434 950 - 77216781 I a score=691748.000000 s hg38.chr17_GL383564v2_alt 122476 73 + 133151 ctcacgcctgtaatcccagcacttc-gggaggccgaggcgggcagatcacttgaggtcaggagatccagaccag s panTro5.chr17 16311595 74 + 83181570 ctcacgcctgtaatcccagcacttcggggaggccgaggcgggcagatcgcttgaggtcaggagatccagaccag i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216458 73 + 83442489 ctcacgcctgtaatcccagcacttc-gggaggccaaggcgggcagatcgcttgaggtcaggagatccagaccag i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051619 73 + 4267968 ctcacgcctgtaatcccagcacttc-gggaggccgaggcgggcagatcacttgaggtcaggagatccagaccag i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031870 73 - 2193130 ctcacgcctgtaatcccagcaattc-aggaggccgaggcgggcagatcacttgaggtcaggagatccagaccag i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105384 73 - 77216781 ctcacgcctgtaatcccagcacttt-gggaggctgacgttggtggatcacctgaggtcaggagatacagaccag i rheMac8.chr16 I 950 C 0 s macFas5.chr16 28017046 73 - 80997621 ctcatgcctgtaatcccagcacttc-gggaggctgaggcgggcagatcacctgaggtcaggagatacagaccag i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2074760 71 + 10377808 ctcacg-ctgtaatcccagcacttc--ggaggctgaggcgggcagatcacctgaggtcaggagatacagaccag i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959646 73 - 8458610 ctcatgcctgtaatcccagcacttc-gggaggccgaggtgggcagatcacctgaggtcaggagatacagaccag i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904874 73 + 75148670 ctcacacctgtaaccccagcacttt-gggaggccgaggcgggcagatcacctgaggtcaggagatacagaccag i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144689 73 + 4244037 ctcatgcctgtaatcccagcacttc-gggaggctgaggcgggcagatcacctgaggtcaggagatacagaccag i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167456 73 + 4569836 ctcatgcctgtaatcccagcacttt-gggaggccaaggcgggcagatcacctgaggtcaggagatccacaccag i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123645 73 - 159171411 ctcatgcctgtagtcccagcacttt-gggaggccgagaggggtggatcacctgaggtcaggagttccagatcgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833603 73 + 3513951 ctcacgcctgtaatcctggcacttt-gggaggccaaggcgggtggatcacctgaggtcaggagttccagatcag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882306 73 + 1920343 ttcatgcctgtaatcctggcacttt-gggaggccgaggtgggtggatcacctgaggtcaggagttccagatcag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998665 73 - 7032639 ctcacacctgtaatcctggcacttt-gggaggccaaggcgggtggatcacctgaggtcaggagttccagatcag i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21438866 72 + 61074082 ctca-gtcagtgaagcatctacctc-ttgattttggctcaggtcatgatctcagggtcgtgggatggagacctg i canFam3.chr9 C 0 I 80 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886691 0 - 28711273 I a score=1714051.000000 s hg38.chr17_GL383564v2_alt 122549 186 + 133151 cctgtgcgacatggcgaaaccctgtctctactaaaaatacagcaattagctgggcttgttggtgcgtgcctgtaatcccaggtacttgggaggctaagtcaggagcatcgtttgagcccaggaggcggaagttgccatgagccaagatcaagctactgcgctccagcctgggcagcagagtgagac s panTro5.chr17 16311669 186 + 83181570 cctgtgcgacatggcgaaatcctgtctctactaaaaatacagcaattagctgggcttgttggtgcgtgcctgtaatcccaggtactcgggaggctaagtcaggagcatcgtttgagcccagggggcggaagttgccatgagccaagatcaagctactgcgctccagcctgggcaacagagtgagac i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216531 186 + 83442489 cctgtgcgacatggcgaaatcctgtctctactaaaaatacagcaattagctgggcttgttggtgcgtgcctgtaatcccaggtactcgggaggctaagtcaggagcatcgtttgagcccaggaggcggaagttgccatgagccaagatcaagctactgcgctccagcctgggcaacagagtgagac i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051692 186 + 4267968 cctgtgcgacatggcgaaaccctgtctctactaaaaatacaacaattagctgggcttgttggtgcgtgcctgtaatcccaggtacttgggaggctaagtcaggagcatcgtttgagcccaggaggcggaagttgccatgagccaagaacaagctactgcgctccagcctgggcaacagagtgagac i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2031943 186 - 2193130 cctgtccaacatggcgaaaccctgtctctactaaaaatacaacaattagctgggcttgtcgttgcatgcctgtaatcccagctacttgggaggctaaggcaggagaattgtttgagcccgggaggcagagggtgccatgagccaagatcaagctactgcactccagcctgggcaacagagtgagac i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105457 186 - 77216781 cctgtccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagccaggcttgtcggtgtgtgcctgtaatcccagcaacttgggaggctaaggcaggagaattgtttgagcccaggaggtggaggttgtagtgagccgagatcaagctactgtactccagcctaggcaacggagtgagac i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017119 186 - 80997621 cctgtccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcttgtcggtgcatgcctgtaatcccagaaacttgggaggctaaggcaggagaattgtttgagcccaggaggtggaggttgcagtgagccaagatcaagctactgtactccagcctgggcaacagagtgagac i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2074831 185 + 10377808 cctgtccaacatggtgaaaccct-tctctactaaaaatacaaaaattagccgggcttgtcggtgcgtgcctgtaatcccagaaacttgggaggctaaggcaggagaattgtttgagcccaggaggtggaggttgcagtgagccaagatcaagctactgtactccagcctgggcaacagagtgagac i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959719 186 - 8458610 cctgtccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcttgtcggtgtgtgcctgtaatcccagcaacttgggaggctaaggcaggagaattgtttgagcccaggaggtggaggttgcagtgagccaagatcaagctactgtactccagcctgggcaacagagtaagac i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64904947 186 + 75148670 cctgtccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcttgtcagtgtgtgcctgtaatcccagcaacttgggaggctaaggcaggagaattgtttgagcccaggaggtggaggttgcagtgagccaagatcaagctactgtactccagcctgggcaacagagtgagac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144762 186 + 4244037 cctgtccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcttgtcggtgcgtgcctgtaatcccagaaacttgggaggctaaggcaggagaattgtttgagcccaggaggtgcaggttgcagtgagccaagatcaagctactgtactccagcctgggcaacagagtgagac i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167529 186 + 4569836 cctgtccaacatggtgaaaccctgtctctactaaaaacacaaaaattagccaggcttgtccacgcgtgcctataatcccagcaacttgggaggctaaggcaggagaattgtttgagcccaggaagtggaggttgcagtgagccaagatcaagctactgtacttcagcctgggcaacagagtgagac i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123718 185 - 159171411 cctgt-caacatggcgaaactctgtctctactaaatatataaaaattagctgggtgtgatggtgtgtgcctgtaattccagctactcaagaggttgaggcaggagaatcatttgagcccaggaggtggaggttgtagtgagccaagatcaagccattgcattccaacctgggggacagaatgagac i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833676 186 + 3513951 cctgtccaacatggtgaaactctgtctctactaaatatataaaaattagccaggtgtgatggtgcgtgcctgtaatcccagctactcaagagattggtacaggaaaatcatttgagcccaggaggtggcggttgtagtgagccaagatcaagccattgcactccaacctgggcgacagaatgagac i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882379 186 + 1920343 cctgtccaacatggcgaaactctatctctactaaacatataaaaattagccaggtgtgatggtgcgtgcctgtaatcccagctactcaagaggttgaggcaggagaatcatttgagcccaggaggctgaggttgtagtgagccaagatcaagccattgcattccaacctgggcgacagaatgaaac i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998738 184 - 7032639 cctgtccaacatggtgaaactctgtctctactaaatatataaaaattagccgggtgtgatggtgcatgcctgtaatcccagctactcaagaggttgaggcaggagaatcatttgagcccaggaggcagaggttgtagtgagccaa-atcaagccattgcattcc-acctgggtgacagaatgagac i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e canFam3.chr9 21438938 80 + 61074082 I e otoGar3.GL873537 5886691 0 - 28711273 I a score=67702.000000 s hg38.chr17_GL383564v2_alt 122735 8 + 133151 tccatctc s panTro5.chr17 16311855 8 + 83181570 tccatctc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216717 8 + 83442489 tccatctc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051878 8 + 4267968 tccatctc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032129 8 - 2193130 tccatctc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105643 8 - 77216781 tctgtctc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017305 8 - 80997621 tctgtctc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075016 8 + 10377808 tctgtctc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959905 8 - 8458610 tctgtctc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905133 8 + 75148670 tctgtctc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144948 8 + 4244037 tctgtctc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167715 8 + 4569836 tctgtctc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123903 8 - 159171411 tccgtctc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833862 8 + 3513951 tctgtctc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882565 8 + 1920343 ccctccaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998922 8 - 7032639 tccatctc i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21439018 8 + 61074082 tctctcta i canFam3.chr9 I 80 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e otoGar3.GL873537 5886691 0 - 28711273 I a score=10141.000000 s hg38.chr17_GL383564v2_alt 122743 17 + 133151 aaaaaaacaaacaaaca------ s panTro5.chr17 16311863 5 + 83181570 aaaaa------------------ i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216725 10 + 83442489 aaaaaaaaaa------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051886 13 + 4267968 aaaaaaaaaaaaa---------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032137 2 - 2193130 aa--------------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105651 17 - 77216781 aaaaaaaaaaaaaaata------ i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017313 16 - 80997621 -aaaaaaaaaaaaaaga------ i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075024 17 + 10377808 aaaaaaaaaaaaaaaaa------ i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959913 17 - 8458610 aaaaaaataaataaata------ i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905141 17 + 75148670 aaaaaaaaaaaaaaaaa------ i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144956 14 + 4244037 ---aaaaaaaaaaaaaa------ i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46123911 6 - 159171411 ----agaaaa------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833870 10 + 3513951 aaaaaaaaaa------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882573 10 + 1920343 aaaaaaaaaa------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998930 7 - 7032639 ---agaaaaa------------- i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22826484 15 + 28711273 --aaaAAGACAGACAAA------ i otoGar3.GL873537 I 9516 C 0 s canFam3.chr9 21439026 23 + 61074082 aaataaataaacaaatcttaaaa i canFam3.chr9 C 0 C 0 e mm10.chr11 22077617 7904 - 122082543 I e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I e colAng1.NW_012122154v1 2167723 0 + 4569836 C a score=-4083.000000 s hg38.chr17_GL383564v2_alt 122760 14 + 133151 aa-------------------------caaaaaaGGACA s panTro5.chr17 16311868 11 + 83181570 ----------------------------aaaaaaGGACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216735 11 + 83442489 ----------------------------aaaaggaaaCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051899 11 + 4267968 ----------------------------aaaaaaGGACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032139 11 - 2193130 ----------------------------aaaaaaGGACG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105668 25 - 77216781 aa-------------aaataaaT-AGAAAAAAAAGGACG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017329 15 - 80997621 aa------------------------aaagaaaaGGACG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075041 15 + 10377808 aa------------------------aaagaaaaGGACG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959930 39 - 8458610 aataaataaataaataaataaataaataaataaaGGACG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905158 26 + 75148670 aa-------------aaaaaaaaaaaaaaaaaaaaGATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144970 26 + 4244037 aa-------------aaaagaaaaaaaaagaaaaGGACG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167723 14 + 4569836 -a------------------------aaaaagaaGGACG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123917 11 - 159171411 ----------------------------aaaaaaaGGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833880 11 + 3513951 ----------------------------aaaaaaaGGCG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882583 11 + 1920343 ----------------------------aaaaaaaaaCG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998937 11 - 7032639 ----------------------------aaaaaaaGGTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22826499 10 + 28711273 TA--------------------------AATAAATG--- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22085521 15 - 122082543 ----------------------AACAGAATAGAAGGA-- i mm10.chr11 I 7904 C 0 s canFam3.chr9 21439049 19 + 61074082 --------------------aaaaaGAATGAAAAGAATG i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e micMur3.chr16 29983974 73 + 65901067 I e dasNov3.JH570468 423313 8902 - 852752 I a score=3082.000000 s hg38.chr17_GL383564v2_alt 122774 1 + 133151 C s panTro5.chr17 16311879 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216746 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051910 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032150 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105693 1 - 77216781 T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017344 1 - 80997621 T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075056 1 + 10377808 T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959969 1 - 8458610 T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905184 1 + 75148670 T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144996 1 + 4244037 T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167737 1 + 4569836 T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123928 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833891 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882594 1 + 1920343 C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998948 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35918734 1 - 65901067 C i micMur3.chr16 I 2667 C 0 s otoGar3.GL873537 22826509 1 + 28711273 C i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22085536 1 - 122082543 C i mm10.chr11 C 0 C 0 s canFam3.chr9 21439068 1 + 61074082 T i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 3002627 2790 + 8555354 I e dasNov3.JH570468 423313 8902 - 852752 I a score=586560.000000 s hg38.chr17_GL383564v2_alt 122775 43 + 133151 G--TCTGC-CATAGACATTGCTGTATTATACT-CA----CTCAGAGGTGCC s panTro5.chr17 16311880 43 + 83181570 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216747 43 + 83442489 G--TCTGC-CATAGACATTGCTGTATTATGCT-CG----CTCAGAGGTGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051911 43 + 4267968 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032151 43 - 2193130 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTGAGAGGTGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105694 43 - 77216781 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017345 43 - 80997621 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075057 44 + 10377808 G--TCTGCGCATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1959970 43 - 8458610 G--TCTGC-CATAGACATTACTGTATTATGCT-CA----CTCAGAGGTGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905185 43 + 75148670 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2144997 43 + 4244037 G--TCTGC-CATAGACATTGCTGTATTATGCT-CA----CTCAGAGGTGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167738 47 + 4569836 G--TCTGC-CATAGACATTGCTGTATTATGCT-CACTCGCTCAGAGGCGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123929 43 - 159171411 A--TCTGC-CATAGACATTGCTGTATTTTGCT-CA----CCCAGAGGTGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833892 43 + 3513951 A--TCTGC-CATAGCCATTGCTGTATTATGCT-CA----CCCAGAGGTGCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882595 45 + 1920343 ACGTCTGC-CATACCCATTTCTGTATTATGCT-CA----CCCAGAGGTGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998949 43 - 7032639 A--TCTGC-CATAGCCATTGCTGTATTATGCT-CA----CCCAGAAGTGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35918735 42 - 65901067 G--TCTGC-CATGGACATTGCTGTGTTATATT-CA----CCCAGAGGTG-T i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3005417 42 + 8555354 G--TCTGC-CACGGACATTGCTGCATTATATT-CA----CCCACAGGTG-C i proCoq1.NW_012135969v1 I 2790 C 0 s otoGar3.GL873537 22826510 42 + 28711273 A--TTTGC-CACGGACATTGGTGCATTATATT-TG----CCCAGAGGTG-T i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22085537 42 - 122082543 --TTGTGT-CATG--TGTTGCTGAATGATGCTGCT----CTCCTGAGTGCC i mm10.chr11 C 0 C 0 s canFam3.chr9 21439069 43 + 61074082 G--TCTAT-TGCGGATATCCCTATATTATACT-TA----CCCAGAGGTGTC i canFam3.chr9 C 0 C 0 e dasNov3.JH570468 423313 8902 - 852752 I a score=4282677.000000 s hg38.chr17_GL383564v2_alt 122818 283 + 133151 CATCTGTGGATGTGGTATGGTGGAAGAAACAGTGGACCAGGAGGGAGAACATCTGGGCCATGGGTCCAATCTACCACGGATGTGTCATCTCTGGGCCTTGGTATCATCTTCTGT--AAAACACAAGTGCTT---GGCAGTG---ATGGTCATGATAGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCCAagttacctgagaaagtt--taaaatatatagcttctcaagctctcataagcac--acattctgatttatcataaggactggaatacagtttgggaatctgtat s panTro5.chr17 16311923 283 + 83181570 CATCTGTGGAtgtggtatggtggaagaaacagtggaccaggagggagaacatctgggccatgggtccaatctaccacggatgtgtcatctctgggccttggtatcatcttctgt--aaaaCACAAGTGCTT---GGCAGTG---ATGGTCATGAGAGGATTAGATTATATCAGTGTTTCCTAAT---------ATAACCCAagttacctgagaaagtt--taaaatacatagcttctcaagctctcataagcac--acattctgatttatcataaggactggaatacagtttgggaatctgtat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16216790 283 + 83442489 CATCTGTGGAtgtggtatggtggaagaaacagtggaccaggagggagaacatctgggccatgggtccaatctaccacggatgtgtcatctctgggccttggtatcatcttctgt--aaaaCACAAGTGCTT---GGCAGTG---ATGGTCATGATAGGATTAGATTATATCAGTGTTTCCTAAT---------ATAACCCAagttacctgagaaagtt--taaaatacatagcttctcaagctctcataagcac--acattctgatttatcataaggactggaatacagtttgggaatctgtat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4051954 283 + 4267968 CATCTCTGGAtgtggtatggtggaagaaacagtggaccaggagggagaacatctgggccatgcgtccaatctaccatggatgtgtcatctctgggccttggtatcatcttctgt--aaaaCACAAGTGCTT---GGCAGTG---ATGGTCATGATAGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCCAagttacctgagaaagtt--taaaatatatagcttctcaagctctcataagcac--acattctgatttatcataaggactggaatacagtttgggaatctgtat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032194 283 - 2193130 CATCTGTGGAtgtggtacagtggaagaaacagtggaccaggagggagaacatctgggccatgggtccaatctaccacggatgtgtcatctctgggcCTTGGTATCATCTTCTGT--AAAACACAAGTGCTT---GGCAGTG---ATGGTCATGATAGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCCgagttacctgagaaagtt--taaaatatatagcttctcaagctctcataagcat--acattctgatttatcataaggactgggatacagtttgggaatctgtat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30105737 283 - 77216781 CATCTGTGGACGTGGTATGGTGGAAGAAACAGTGGACCAGGAGGGCGAACATCTGGGCCATGGGTCCAATTTACCACGGATGTGTCGTCTCTGGGCCTTGGTATCATCTTCTGT--AAAACACAAGTGCTT---GGTGGTG---ATGGTCATAATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCTGAGTTACCTGAGAAAGTT--TAAAATATATAGCTTCTCAAGTTCTCATAAGCAC--ACATTTTGATTTATCATAAGGACTGGAATACAGTTTGGGAATCTGTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017388 283 - 80997621 CATCTGTGGACGTGGTATGGTGGAAGAAACACTGGACCAGGAGGGCGAACATCTGGGCCATGGGTCCAATTTACCACGGATGTGTCGTCTCTGGGCCTTGGTATCATCTTCTGT--AAAACACAAGTGCTT---GGCGGTG---ATGGTCATAATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCTgagttacctgagaaagtt--taaaatatatagcttctcaagttctcataagcac--acattttgatttatcataaggactggaatacagtttgggaatctgtat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075101 283 + 10377808 CATCTGTGGACgtggtatggtggaagaaacactggaccaggagggcgaacatctgggccatgggtccaatttaccacggatgtgtcgtctctgggccttggtatcatcttctgt--aaaaCACAAGTGCTT---GGCGGTG---ATGGTCATAATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCTGAGTTACCTGAGAAAGTT--TAAAATATATAGCTTCTCAAGTTCTCATAAGCAC--ACATTTTGATTTATCATAAGGACTGGAATACAGTTTGGGAATCTGTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960013 283 - 8458610 CATCTGTGGACGTGGTATGGTGGAAGAAACACTGGACCAGGAGGGCGAACATCTGGGCCATGGGTCCAATTTACCATGGATGTGTCGTCTCTGGGCCTTGGTATCATCTTCTGT--AAAACACAAGTGCTT---GGTGGTG---ATGGTCATAATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCTGAGTTACCTGAGAAAGTT--TAAAATATATAGCTTCTCAAGTTCTCATAAGCAC--ACATTTTGATTTATCATAAGGACTGGAATACAGTTTGGGAATCTGTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905228 283 + 75148670 CATCTGTGGACGTGGTATGGTGGAAGAAACACTGGACCAGGAGGGCGAACATCTGGGCCATGGGTCCAATTTACCACGGATGTGTCGTCTCTGGTCCTTGGTGTCATCTTCTGT--AAAACACAAGTGCTT---GGCGGTG---ATGGTCATAATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCTgagttacctgagaaagtt--taaaatatatagcttctcaagttctcataagcac--acattttgatttatcataaggactggaatacagtttgggaatctgtac i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145040 283 + 4244037 CATCTGTGGACgtggtatggtggaagaaacactggaccaggagggcgaacatctggaccatgggtccaatttaccacggatgtgtcgtctctgggccttggtatcatcttctgt--aaaaCACAAGTGCTT---GGCGGTG---ATGGTCATGATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAACCTGAGTTACCTGAGAAAGTT--TAAAATATATAGCTTCTCAAGTTCTCATAAGCAC--ACATTTTGATTTATCATAAGGACTGGAATACAGTTTGGGAATCTGTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2167785 271 + 4569836 CATCTGTGGACgtgatgtggtggaagaaacactggaccaggagggcgaacatctgggccctgggtccaacttaccacggatgtgtcgtctctgggccttggtatcatcttctgt--aaaaCACAAGTGCTT---GGCGGTG---ATGGTCATAATGGGATTAGATTATATCAGTGTTTCCTAAT---------GTAATCTGAGTTACCCGAGAAAGTT--TAAAATATATAGCTTCTCAAGTTCTCATAAGCAC--ACATTTTGATTTATCATAAGGAC------------AGGGAATCTGTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46123972 282 - 159171411 CATCTGTGGATGTGGCATGGTGGAAGAAACACTGGACCAGGAGGGAGAATATCTGGGTCATGGGTCCAATCTACCATGGATGTGTCGTCTCTGGACCTTGGTATCATCTTTCGT--AAAACACAAGAGCTT---GG-GGCA---ATGGTCATAACGGGGTTAGATTCTATCAGTGTTTCCTAAT---------GTAACCCgagttacccgagaaagtt--taaaatatgtagcttctcaagctctcataagcac--atactctgatttatcataaggactgggatacagtttgggaatctgtat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1833935 282 + 3513951 CATCTGTGGATGTGGCATGGTGGAAGAAACACTGGACCAGGATGGAGAACATCTGGGTCATGGGTCCAATCTACCATGGATGTTTCGTCTCTGGGCCTTGATATCATCTTTCAT--AAAACAAAAGAGCTT---GG-GGTG---ATGATCATGATGGGATTAGATTCTATCAGTGTTTCCTAAT---------GTAACCTgagttacctgagaaagtt--taaaatacacagtttctcaagctctcataaacac--atattctgatttatcataaggactgggatacagtttgggaacctgtat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882640 282 + 1920343 CATCTGTGGTTGCGGCACGGTGGAAGAAACACTGGACCAGGAGGGAGAACATCTGGGTCATGGGTCCAGTCTACCATGGATGTGTCGTCTCTGGGCCTTGGTATCATCTTTCGT--AAAACACAAGAGCTT---GG-GGCG---ATGGTCATGATGGGATTAGAGTCTATCAGTCTTTCCTAAT---------GTAACCCgagttacccgagaaagtt--taaaatatatagcttctcaagctctcataagcac--atattctgatttatcataaggactgggatacagtttgggaatctgtat i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6998992 281 - 7032639 CATCTGTGGATGTGGCATGGTGGAAGAAGCACTGGACCAGGA-GGAGAACATCTGGGTCATGGGTCCAATCTACCATGGATGTGTCGTCTCTGGGCCTTGGTATCATCCTTCAT--AAAACACAAGAGCTT---GG-GGCG---ATGGTCATGATGGGATTAGATTCTATCAATGTTTCCTAAT---------GTAACCCgagttacccgagaaagtt--taaaatatatagcttctcaagctctcataagcac--atattctgatttatcataaggactgggatacagtttgggaagctgtat i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35918777 291 - 65901067 CATCTGTGGACATGGTCTGGCTTGAGAAACCATGGACCAGGAAGCAAGACATCTGGGTTACGGGTCCAATCTATCACTGATGTGTCTCTTCTGGGCCTTGGTATCATTTTCTGT--AAAATACAAGTGCTT---GGGGGTG---ATGGTCACGGTCATATTCAATTATACCAGTGTTTCCTAAT--CTATCTGATAATCTGAGTCACCTTAGAAACTT-AAAAAATGTATAGCTTCTCATGCTCCCAGGAGCAC--ATACTTTGATTTAGCGTAAGGACTGGGAGGTAGTTTGGGGATCTGTAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3005459 290 + 8555354 CATCTGTGGACATGGACTGGCTTgagaaaccgtggaccaggaagcaagacatctgggttatgggtccaatctatcactgatgtgtctcctctgggccttggtttcattttctgt--aaaatacaagtgctt---ggGGGTG---ATGGTCATGGTCATATTCAATTATACcagtgtttcctaac--ctatttgataatctgagtcatcttagaaactt--aaaaatgtgtagcttctcatgctctcaggagcac--atattctgatttagcataaggactgggaggtagtttggggatctgtat i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22826552 281 + 28711273 CATCTGTGGACATGGCCTGGTTTgagaaactgtggaccaggaagcaggacatctgggttatgggtccagtttatcactgatgtgtcctctctgggctttggtatcatcttccat--aaaatACAAGCGCTTC--GGGGGTG---ATGGTCATGGTCATATTCAGTTATATCAGTGTT-----Ac--ttgtttgatcatctgagtcacctgagaaactt--aaaaatatattgcttttcacgcctccaagagcac--agattctgattcagaata-----taggaggcagtttggggatgtgtat i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22085579 284 - 122082543 AGACTCAGG--GCGGTACTGTGGCATGGATACTTGACCAGGAAACAGAACACCTAG-TGATGAGTTCAATCTAGCATTAATGTGTC-TCTCTGGACTTTGGTGACATCTTTCAA--AATCCACAAGCACTTTCAGGTTGTGCGTGTGGTCTAAGCAGTGTTAAATAATGTCAGCGTTTTGTAGAGCCAATTTGATAGCCTAACCCACCTTAGACACTT--TTAAGCACACAACTTCATAAACACTCAG----------ATTTTGACTTAATATAA-GACAGGGATGCA-CTTGGAGATCTGTGT i mm10.chr11 C 0 I 330 s canFam3.chr9 21439112 288 + 61074082 CATCTGTGGATGTGGAATGATGGAAGCAACACTGGACCAGGAAACAGAACATCTGGGCTACGAAGCCACTCTATCATTAATGTGTTTTCTCTGGGCCATGGTATCAACCTCTGCGGGGAAAAAAGGGGCTT---AAGGGTG---ATGGTCATGGTGGCATTAAATTCTATCAGTGTTTTGTTAC--CTATTTGAGAatttgagtcatctgggaaactt--tagaacatatagcttctcaaactcccatcagcac--ataaactgatttaacaggaaga----agtacaggttggggggctttgc i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 432215 290 - 852752 CACCTGGAGTTGTGGTGTGGTGAAAGGAATATAGGACCAGAAAG-AGAACATGTGGGTTATGGATCAGCTCTGTTGTTAACGTCTCCTCTCTGGGCTGTGGCATCATTTCCTGT--ATAATAGAAGGGCTT---GGGGGCA---ATGGTTATGGTGGTACTAGATTATATcagagttttgtaac--ctctgttgtaatattagccacctgggaaacttaaaaaaaaatacggattctcaagctcccacgagtataaatattctgatttaaca---ggactgggatgcagtttgggaatctgtat i dasNov3.JH570468 I 8902 C 0 a score=176117.000000 s hg38.chr17_GL383564v2_alt 123101 13 + 133151 ttttcaaaaggcc s panTro5.chr17 16312206 13 + 83181570 ttttcaaaaggcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217073 13 + 83442489 ttttcaaaaggcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052237 12 + 4267968 ttttcaaaagg-c i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032477 13 - 2193130 ttttctaaaggcc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106020 13 - 77216781 TTTTCAAAAGGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017671 13 - 80997621 ttttcaaaaggcc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075384 13 + 10377808 TTTTCAAAAGGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960296 13 - 8458610 TTTTCAAAAGGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905511 13 + 75148670 ttttcaaaaggcc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145323 13 + 4244037 TTTTCAAAAGGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168056 13 + 4569836 TTTTCAAAAGGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124254 13 - 159171411 ttttcaaaaggcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834217 13 + 3513951 ttttcaaaaggcc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882922 13 + 1920343 ttttcaagaggcc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999273 13 - 7032639 ttttcaaaaggcc i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919068 13 - 65901067 TTTTAGGGATCCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3005749 13 + 8555354 ttttcaggagccc i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22826833 13 + 28711273 tttttggaagcct i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21439402 13 + 61074082 ttttcaaaagcct i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 432505 11 - 852752 -ttttaaaagtc- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22085863 330 - 122082543 I a score=988446.000000 s hg38.chr17_GL383564v2_alt 123114 70 + 133151 cccttttaggcaattctgatata-------------aaa------------------cc-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa s panTro5.chr17 16312219 70 + 83181570 cccttttaggcaattctgatata-------------aaa------------------cc-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217086 70 + 83442489 cccttttaggcaattctgatata-------------aaa------------------cc-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052249 70 + 4267968 cccttttaggcaattctgatata-------------aaa------------------cc-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032490 70 - 2193130 cccttttaggcaattctgatata-------------aaa------------------cc-----------ct--gg--accagatgatgtttcaggggttcttccc-agctctaaaa i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106033 70 - 77216781 CCCTTTTAGGCAATTCTGACATA-------------AAT------------------CC-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017684 70 - 80997621 cccttttaggcaattctgacatA-------------AAT------------------CC-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075397 70 + 10377808 CCCTTTTAGGCAATTCTGACATA-------------AAT------------------CC-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960309 70 - 8458610 CCCTTTTAGGCAATTCTGACATA-------------AAT------------------CC-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905524 70 + 75148670 cccttttaggcaattctgaCATA-------------AAT------------------CC-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145336 69 + 4244037 CCCTTTTAGGCAATTCTGACATA-------------AAT------------------CC-----------Ct--gg--accagatgatgtttcaggggttcctccc-agctct-aaa i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168069 70 + 4569836 CCCCTTTAGGCAATTCTGACATA-------------AAA------------------CC-----------ct--gg--accagatgatgtttcaggggttcctccc-agctctaaaa i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124267 67 - 159171411 cccttttaggcagttctgtcgtg-------------aaa------------------cc-----------CT--GG--ACAA---AATGTTTCAGGGGTTCCTCCC-AGCTCTAAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834230 70 + 3513951 ccGTTTTAGGCAGTTCTGTCGTA-------------AAA------------------CC-----------ct--gg--acaagatgatgtttcaggggttcctccc-agctccaaaa i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1882935 70 + 1920343 cccTTTTAGGCAGTTCTGTCGTA-------------AAA------------------CC-----------ct--gg--acaagatgatgtttcaggggttcctccc-agctctaaaa i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999286 70 - 7032639 cccTTTTGGGCAGTTCTGTCATA-------------AAA------------------CC-----------ct--gg--acaagatgatgtttcaggtgttcctccc-agctctaaaa i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919081 83 - 65901067 CCACCCTAGGCAATTATGATACAAAACAGGGCTTAGAAA------------------CC-----------ct--gg--accagatgatttttcaggggctcctccc-agctctaaaa i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3005762 83 + 8555354 ccaccctaggcaattatgatataacacagggcttagaaA------------------CC-----------ct--gg--accaggtgatctttcaggggttcctccc-ggctctaaaa i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22826846 86 + 28711273 ccatcctaggcaattacgatgtAAAATGGGTCTTTGAAA------------------CT-----------CT--GGACACCAGATGATCTTTCAGGGATTCCTCCCAAGCTCTAAAC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22086193 79 - 122082543 CCACTCGAGGTAATCCTGACATG-------------AAA------------------CTAGCCACAGCCACT--GG--AGGCGGTGATGGCTCAGGGCTTCCTTGT-GCCCC--AGG i mm10.chr11 I 330 C 0 s canFam3.chr9 21439415 80 + 61074082 ctgtcttaggccattctga-gta-------------aaatcaggtttagaaaccctgCC-----------CT--GG--ACCACATGATCTCT-------TCCTCCC-AATTTTAAAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 432516 85 - 852752 ccaacccaggtgattctgatgtaaaatgaggtagagaaA------------------CC-----------CTTGGG--CCCAGATGAAATTTTGAGGTCCCATCCC-GGGTGTAAAA i dasNov3.JH570468 C 0 I 2263 a score=695352.000000 s hg38.chr17_GL383564v2_alt 123184 43 + 133151 ttccATATCCTGTGAAGTATTGAGTATCATATCAGATCCAAGT s panTro5.chr17 16312289 43 + 83181570 ttccATATCTTGTGAAGTATTGAGTATCATATCAGATCCAAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217156 43 + 83442489 ttccATATCTTGTGAAGTATTGCGTATCATATCAGATCCAAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052319 43 + 4267968 ttccATATCCTGTGAAGTATTGAGTATCATATCAGATCCAAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032560 43 - 2193130 ttccATATCCTGTGAAGTATTGAGTATCAGATCAGATCCAAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106103 43 - 77216781 tttcATATCCTGTGAAGTATTGAGTATCATATCAGATCCAAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017754 43 - 80997621 tttcATATCCTGTGAAGTATTGAGTATCATCTCAGATCCAAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075467 43 + 10377808 tttcATATCCTGTGAAGTATTGAGTATCATCTCAGATCCAAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960379 43 - 8458610 tttcATATCCTGTGAAGTATTGAGTATCATATCAGATCCAAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905594 43 + 75148670 tttcATATCCTGTGAAGTATTGAGTATCATATCAGATCCAAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145405 43 + 4244037 tttcatatcctgtgaAGTATTGAGTATCATATCAGATCCAAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168139 43 + 4569836 tttcATATCCTGTGAAGTATTGAGTATCGTATCAGATCCAAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124334 43 - 159171411 TTCCACTTCCTGTGAAATACTGAGTATCACATCAGATCCAAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834300 43 + 3513951 ttccacTTCCTGTGAAATACTGAGTATCACATCAGATCCAAGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883005 43 + 1920343 ttccacTTCCTGTGAAATACTGAGTATCACATCAGATCCAAGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999356 43 - 7032639 ttccacTTCCTGTGAAATACTGAGTATCACATCAGATACAAGT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919164 43 - 65901067 ttccacCTTCTGTGCAGTACTGAGTGTCACATCAGATCCAAGT i micMur3.chr16 C 0 I 281 s proCoq1.NW_012135969v1 3005845 43 + 8555354 ttccacattctGTGAAGTTCTCAGTGTCATATCAGATCCAAGT i proCoq1.NW_012135969v1 C 0 I 211 s otoGar3.GL873537 22826932 43 + 28711273 TTCCACACCCTGTGAAGTACTGGAAGTCATATCAGATCTAAGT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22086272 43 - 122082543 TTCCCTATCGGGTAAAGCAGTGGGTTCCACGTCAGGTCCAAGT i mm10.chr11 C 0 I 7 s canFam3.chr9 21439495 43 + 61074082 TTCCACATCCCACGAAGTACCGAGCATCCTATTAGATACAAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 434864 41 - 852752 TTCCATGCCCTGTGAGGGACAGAG--TCATATCAGATCCAAGT i dasNov3.JH570468 I 2263 C 0 a score=2180406.000000 s hg38.chr17_GL383564v2_alt 123227 214 + 133151 AACTCATTCAT------CATTTACCC--TCCCGACTC---------CCACCCTGTCCTTAGTTCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTTACAAAGAAAGGGAAATGAAAAGGGAAGGACTAGATCCCTTGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCCCACCCCACCCCTATCTTCTGTCCTCTACCCCTACTAGATGT---TGTATTCC s panTro5.chr17 16312332 214 + 83181570 AACTCATTCAT------CATTTACCC--TCCCGACTC---------CCACCCTGTCCTTAGTTCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTTACAAAGAAAGGGAAATGAAAAGGGAAGGACTAGATCCCTTGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCCCACCCCACCCCTATCTTCTGTCCTCTACCCCTACTAGATGT---TGTATTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217199 214 + 83442489 AACTCATTCAT------CATTTACCC--TCCTGACTC---------CCACCCTGTCCTTAGTTCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTTACAAAGAAAGGGAAATGAAAAGGGAAGGACTAGATCCCTTGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCCCACCCCACCCCTATCTTCTGTCCTCTACCCCTACTAGATGT---TGTATTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052362 214 + 4267968 AACTCATTCAT------CATTTACCC--TCCCGACTC---------CCACCCTGTCCTTAGTTCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTTACAAAGAAAGGGAAATGAAAAGGGAAGGACTAGATCCCTTGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCCCACCCCAACCCTATCTTCTGTCCTCTACCCCTACTAGATGT---TGTATTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032603 214 - 2193130 AACTCATTCAT------CATTTACCC--TCCCGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTTAAAAAGAAAGGGAAATGAAAAGGGAAGGACTAGATCCCTTTATCCAGATCCTTACTCCCA-TCC-CTCCTTCTATTCCCACCCCACCCCTATCTTCTGTCCTCTACCCCTACTAGATGT---TGTATTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106146 216 - 77216781 AACCCATTCAT------CATTCAGCC--TCCGGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGACTGTCTTACTTCT-A-GCCCATCTGAAAAAGAAAGGGAAATGAAAAGGGAAGGACTGGATCCCTTGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCTCACCCCACCCCTATCTTCTGTCCTCCACCCCTACTAGATGTTG-TGTATTCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28017797 216 - 80997621 AACCCATTCAT------CATTCAGCC--TCCGGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTGAAAAAGAAAGGGAAATGAAAAGGGAAGGACTGGATCCCTTGATCCAGATCCTTACTCTCA-TCC-CTCCTTCCATTCTCACCCCACCCCTATCTTCTGTCCTCCACCCCTACTAGATGTTG-TGTATTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075510 216 + 10377808 AACCCATTCAT------CATTCAGCC--TCCGGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTGAAAAAGAAAGGGAAATGAAAAGGGAAGGACTGGATCCCTTGATCCAGATCCTTACTCTCA-TCC-CTCCTTCCATTCTCACCCCACCCCTATCTTCTGTCCTCCACCCCTACTAGATGTTG-TGTATTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960422 216 - 8458610 AACCCATTCAT------CATTCAGCC--TCCGGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGACTGTCTTACTTCT-A-GCCCATCTGAAAAGGAAAGGGAAATGAAAAGGGAAGGACTGGATCCCTGGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCTCACCCCACCCCTATCTTCTGTCCTCTACCCCTACTAGATGTTG-TGTATTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905637 213 + 75148670 AACCCATTCAT------CATTCAGCC--TCCGGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTGAAAAAGAAAGGGAAATGAAAA-GGAAGGACTGGATCTCTTGATCCAGATCCTTACTTCCA-TCC-CTCCTTCCATTCTCACCCCACCCCTATCTTCTGTCCTCCACCCCTACTAGATGT---TGTATTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145448 216 + 4244037 AACCCATTCAT------CATTCAGCC--TCCGGACCC---------CCACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGGCTGTCTTACTTCT-A-GCCCATCTGAAAAAGAAAGGGAAATGAAAAGGGAAGGACTGGATCCCTTGATCCAGATCCTTACTTCCA-TCC-CTCCTTCCATTCTCACCCCACCCCTATCTTCTGTCCTCCACCCCTACTAGATGTTG-TGTATTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168182 214 + 4569836 AACCCATTAAT------CATTCAGCC--TCTGGACCC---------CTACCCTGTCCTTAGTCCTTCTAGCCCTTCTTAGAGGTTGTCTTACTTCT-A-GCCCATCTGAAAAAGAAAGGGAAATGAAAAGGGAAGGACTGGATCCCTTGATCCAGATCCTTACTCCCA-TCC-CTCCTTCCATTCCCACCCCACCCCTATCTTCTGTCCTCCACCCCTACTACATGT---TGTATTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124377 209 - 159171411 AACCCATTCAT------CATTCACCC--TCCCAACCT---------TGACCCTGTCCTTGGTCCTTCCAGCC---CTTAGAGGCTGCCTTACTTCT-A-GACCGTCTGAAAAAGAAAGGGAAATGAAAAGGGAAGGATCGGGTCCCCTGATCCAGATTCTCACTCCCA-TCC-CTCCTTCCATTCCCGCCC--ACCCCATCTCCTGTCCTCTACCCCGAATAGATGT---TGGATTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834343 209 + 3513951 AACCCATTCAT------CATTTACCC--TCCCAACCC---------TGACCCTGTCCTTGGTCCTTCCAGCC---CTTAGAGGCTGCCTTACTTCT-A-GCTCGTCTGAAAAAGAAAAGGAAATGAAAAGGGAAGGAGTGGGTCCCCTGATCCAGATCCTCACTCCCA-TCC-CTCCTTGCATTCCCGCCC--ACCCCATCTCCTGTCCTCCACCCTGAATAGATGT---TGGATTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883048 156 + 1920343 AACCCATTCAT------CACTCACCC--TCTCAACCC---------TGACCCTGTCCTTGGTCCTTCCAGCC---CTTAGAGGCTGCCTTACTTCT-A-GCCTGTCTGAAAAAGAAAGG-------------------------------------------------------TCCTTCCATTCTCGCCC--ACCCCATCTCCTGTCCTCCACCCTAAATAGATGT---TGGATTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999399 209 - 7032639 AACCCATTCAT------CATTCACCC--TCCTAACCC---------TGACCCTGTCCTTGGTCCTTCCAGCT---CTTAGAGGCTGCCTTACTTCT-A-GCCAGTCCGAAAAAGAAAGGGAAATGAAAAGGGAAGGAGTGGGTCCCCTGATCCAGATCCTCACTTCCA-TCC-CTCCTTCCATTCCCGCCC--ACCCCATCTCCTGTCCTCCACCCCGAATAGATGT---TGGATTCC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22826975 194 + 28711273 AATCCATTTGC------CATTCACTC--CCCAG-CCC---------ATGCCCCATCCTCAGTCCTTCTAGCCTTCCTTGGGGGCTTCCTGACTTCCGG-GACTATCTAAAAAGGAAAGGGAAATG-AGAGGGAGGACTTGTGTTCCTTAATCCAGATCCTCAC--CCA-CCCGCATTTTTTATTCCCCCAC-----------------CTGCACCCCAACTAG-TAA---TGTGGTCA i otoGar3.GL873537 C 0 I 16 s mm10.chr11 22086322 201 - 122082543 TCCCCATTCCTGTGCCACATCTGCCCTGTCCTGAGTCTGCGCAGATCTTCCTTGTCCCCAGTCTGCCTAACCTCTCTTAGAGGTGGCTTTGCTTCC-A-GCCCATCTCCAAAAGAAAGGCAAAGGAAAGGGGAGGGGCTGTGTTATTTGGCCCAGAT----------------TCCCATCTGTACCCACTA-------ATCCCTTGGCTTA----------AGGTGGAGACACATT-- i mm10.chr11 I 7 C 0 s canFam3.chr9 21439538 191 + 61074082 AACCCAT----------CATCTGCCA--TC---ACCC-----------------TTCTCAGTCCATCTAACCTATCTTAGAGGCTGCCTTACCTCC-AGGCCCATATAAAAGGAAAATGTAAATTAAAATGGAAGGACTGTGTCTCCTGATCCAGATCTCCACACCCACTGC-CATCTTCCATCCCCACCT---CCCACTCCACCCTCTTCT-------CTGGGTGC---TGCCTTCC i canFam3.chr9 C 0 I 15 s dasNov3.JH570468 434905 153 - 852752 ---------AC------TCTCTGCCC--TC------C---------CCTCCACATCCGCCTGCTTCTCAGCCCTCCTTGGAGGCTGCCCCA-TCCA-G-ACCCATCTGCAAAGGAAAGGGAAGTG-----------------CCCCTTGATCCAGATCTCCACTCCTC-TCC-------------CCACTC---------CTCCGGGCTTCT-------CTGGGTGT---GGCTTTCC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3005888 211 + 8555354 I e micMur3.chr16 35919207 281 - 65901067 I a score=821600.000000 s hg38.chr17_GL383564v2_alt 123441 61 + 133151 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAGAACAAGGTACCAAAGTCCAAGAAAGAG s panTro5.chr17 16312546 61 + 83181570 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAGAACAAGGTACCAAAGCCCAAGAAAGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217413 61 + 83442489 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAGAACAAGGTACCAAAGCCCAAGAAAGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052576 60 + 4267968 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAGAACAAGGTACCAAAG-CCAAGAAAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032817 61 - 2193130 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAGAACAAGGTACCAAAGCCCAAGAAAGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106362 60 - 77216781 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018013 60 - 80997621 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075726 60 + 10377808 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960638 60 - 8458610 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905850 60 + 75148670 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145664 60 + 4244037 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168396 60 + 4569836 ----------------AGCTCCAGGGCTGCCATGGGCACTCCAAGAGGAG-ACAAGGTACCAAAGTCCAAGAAAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124586 61 - 159171411 ----------------AGCTCCAGTGGTGCCATGGGCACTCCAAGAGGGTGACAAGGTACCAAAGCCACACATGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834552 61 + 3513951 ----------------AGCTTCAGGGGTGCCATGGGCACTCCAAGAGGGTGACAAGGTACCAAAGCCACACATGGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883204 61 + 1920343 ----------------AGCTCCAGCAGTGCCATGGCCACTCCAAGAGGGTGACAAGGTACCAAAGCCACACATGGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999608 60 - 7032639 ----------------AGCTCCAGGGGTGCCATGGGCACTCCAAGAGGGTGACAAGGTACCAAAG-CACACATGGAG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3006099 61 + 8555354 ----------------AGCTCCTGGGCTGCCACGCTCATTCCAAGAGGATGACAAGGTACCAGAGCCCAAAACGGAG i proCoq1.NW_012135969v1 I 211 C 0 s otoGar3.GL873537 22827185 61 + 28711273 ----------------GGCTGCAGGACTGCCATGGTCATCCCAAGAGGATGACAAGGTACCAAAGCCCAAAATGAAG i otoGar3.GL873537 I 16 C 0 s mm10.chr11 22086523 61 - 122082543 ----------------GGCTCTGGGGCTGCCATGATCATCCCTGGAGCAAGGCAAGGTCCCAAGGCTTAAAGTACAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21439744 60 + 61074082 ----------------GTTTACAGGATTGCCATTGCCATTCCAAGAGTATGACAAGATACCAAA-CCCAACATGGAG i canFam3.chr9 I 15 C 0 s dasNov3.JH570468 435058 77 - 852752 AGAGGCTGAGCCTGTAGGCTCCAGGGCCACCATTAGCATTCCAAGAGGATGACAAGGCACCAAAGCCTAAAATGGGG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35919207 281 - 65901067 I a score=2188666.000000 s hg38.chr17_GL383564v2_alt 123502 143 + 133151 ACAGAAATTTTGACCCATCTCAAAATTTACACATGGACCTGAACCATCTGTAGATTTTAGACTCCTTGCAAAGGCATTTTATTCCTTGGGATGACACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAT s panTro5.chr17 16312607 143 + 83181570 ACAGAAATTTTGAACCATCTCAAAATTTACACATGGACCTGAACCATCTGTAGATTTTAGACTCCTTGCAAAGGCATTTTATTCCTTGGGATGACACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217474 143 + 83442489 ACAGAAATTTTGAACCATCTCAAAATTTACACATGGACCTGAACCATCTGTAGATTTTAGACTCCTTGCAAAGGCATTTTATTCCTTGGGATGACACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052636 143 + 4267968 ACAGAAATTTTGACCCATCTCAAAATTTACACATGGACCTGAACCATCTGTAGATTTTAGACTCCTTGCAAAGGCATTTTATTCCTTGGGATGACACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2032878 143 - 2193130 ACAGAAATTTTGACCCATCTCAAAATTTACACATGGACCTGAACCATCTGTAGATTTTAGACTCCTTGCAAAGGCATTTTATTCCTTGGGATGACACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106422 141 - 77216781 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGACCTGAACCATCTATAGATTTTAGACTCCTTCCAAAGGCATTTTATTCCTTGGGATGACA--CTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018073 141 - 80997621 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGACCTGAACCATCTATAGATTTTAGACTCCTTCCAAAGGCATTTTATTCCTTGGGATGACA--CTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075786 141 + 10377808 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGACCTGAACCATCTATAGATTTTAGACTCCTTCCAAAGGCATTTTATTCCTTGGGATGACA--CTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960698 141 - 8458610 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGACCTGAACCATCTATAGATTTTAGACTCCTTCCAAAGGCATTTTATTCCTTGGGATGACA--CTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64905910 141 + 75148670 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGACCTGAACCATCTATAGATTTTAGACTCCTTCCAAAGACATTTTATTCCTGGGGATGACA--CTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145724 141 + 4244037 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGACCTGAACCATCTATAGATTTTAGACTCCTTCCAAAGGCATTTTATTCCTTGGGATGACA--CTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168456 143 + 4569836 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGATCTGAACCATCTATAGATTTTAGACTCCTGCCAAAGGCATTTTACTCCTTGGGATGACACTCTGGGTATTTTGTACTCTAATTTCTCCTTCTGCCAGATGGTCTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124647 142 - 159171411 ACAGAAATTTTGACCCATCTCAGAATTTACACATGGATCTAAACCATATGTGGGTCTTAGGCTTCTTCCAAAGGAATTTTATTCC-TAGGATGACACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834613 143 + 3513951 ACAGAAATTTTGATCCATCTCAGAATTTACACATGGATCTGAACCATATGTGGATCTTAGGCTTCTTCCAAAGGAACTTTATTCCTTAGGATGGCACTGTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGGCGGTCTAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883265 143 + 1920343 ACAGAAATTTTGATCCATCTCAGAATTTGCACATGGATCTGAACCATATGTGGATCTTAGGCTTCTTCCAAAGGAACTTTATTCCTTAGGATGGCACTCTTGGTATTTTGTATTCTAATTTCTCATTCTGCCCAATGGTCTAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999668 143 - 7032639 ACAGAAATTTTGACACATCTCAGAATTTACACATGGATCTGAACCATATGTGGATCTTAGGCTTCTTCCAAAGGAACTTTATTCCTTAGGATGATACTCTGGGTATTTTGTATTCTAATTTCTCCTTCTGCCAGATGGTCTAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919488 143 - 65901067 ACAGAAATTTTGACCCATCTCAGAATGTACACAGGAACCTGAATCCTTTGTGGATTCTAGTCTCTTTCCAAAGCCACTTTATCCCCTAGGATGACACTGTGGGTATTTTGCATGCTACTTCCTCATTCTGCCAGGTGGCCTAT i micMur3.chr16 I 281 C 0 s proCoq1.NW_012135969v1 3006160 143 + 8555354 ACAGAAATTTTGACCCATCTCAGAATGTACACAGGAACCTGAATCCTCTGTGGATTCTAGTCTCTTTCCAAAGCCACTTTATCCCCCAGGATGACACTCTGGGTATTTTGCATGCTACTTCCTCATTCTGCCAGATGGCCTAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22827246 136 + 28711273 ACAGAAATTTGGACCTGTCTCAGAATTTACACATGAACCTGAATCCTCTGT-GATTCTAGTCTCTTTCCAGAGGC----TAGCCCCTGGGGTGACACTC-GGGTGTTTTATTTGTTAATT-CTCACTCTGCCAGATGGCCTAT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22086584 129 - 122082543 ACAGACCGTTC-ACCCATCTCAGAACCTGAGCAT----------CCTCATCGCATCCTCATCTCTTCCCCAAAGCCTTTGACTTCTTGGGGCGACA-TTGGGGTATTCCACA--CTGATGTCACATCCTGGCAGATGCTCTAT i mm10.chr11 C 0 I 1016 s canFam3.chr9 21439804 143 + 61074082 ATAGGAATTTTGACCTGTCTCAGAATTTACACACGGACCTGAATCCTCCGTGGATCCTAACCTCTTTCCAAAGTCATTTTGTGCCCTGCGATGGTACTCTGGGTGTTTCCTATGCTAATCTCTCATTCTGCTAGTTGGTCTTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 435135 139 - 852752 AAAGGAATTTGGATCCAGCTCAGAATTTACACATGTACCTGAATCTTTTGTGGATTCTAGTCTCTTTCCAAAGGTGTTTTATTCTCTGGGATTACA--CTGAGAGTTGTATACACTAAC--CTCATTCTGCCAATCTGTCTGT i dasNov3.JH570468 C 0 C 0 a score=168019.000000 s hg38.chr17_GL383564v2_alt 123645 15 + 133151 AAGGTTCGAACTC--TT-- s panTro5.chr17 16312750 17 + 83181570 AAGGTTCGAACTCTTTT-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217617 17 + 83442489 AAGGTTCGAACTCTTTT-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052779 17 + 4267968 AAGGTTCGAACTCTTTT-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033021 17 - 2193130 AAGGTTGGAGCTCTTTT-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106563 16 - 77216781 AAGGTTGGAGCTC-TTT-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018214 16 - 80997621 AAGGTTGGAGCTC-TTT-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075927 16 + 10377808 AAGGTTGGAGCTC-TTT-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960839 16 - 8458610 AAGGTTGGAGCTC-TTT-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906051 16 + 75148670 AAGGTTGGAGCTC-TTT-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145865 16 + 4244037 AAGGTTGGAGCTC-TTT-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168599 16 + 4569836 AAGGTTGGAGCTC-TTT-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124789 16 - 159171411 AAGGTTGGAGCTC-TTT-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834756 16 + 3513951 AAGGTAGGAGCTC-TTT-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883408 16 + 1920343 AAGGTTGGAGCTC-TTT-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999811 16 - 7032639 GAGGTTGGAGCTC-TTT-- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919631 16 - 65901067 AAGGTTGGAGCTC-TTA-- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3006303 16 + 8555354 AAGGTTGGGGCTC-TTA-- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22827382 16 + 28711273 AAGGTTGGGGGTC-TTA-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21439947 2 + 61074082 ---------------AA-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 435274 18 - 852752 AAGATTGGATCTT-TTTAT i dasNov3.JH570468 C 0 I 432 e mm10.chr11 22086713 1016 - 122082543 I a score=739153.000000 s hg38.chr17_GL383564v2_alt 123660 54 + 133151 AAAAAAAGTGCGTTACATTCCCATTTTAATGTAGCATTTTGGATATTTACTGAt s panTro5.chr17 16312767 54 + 83181570 AAAAAAAGTGCGCTACATTCCTATTTTAATGTAGCATTTTGGATATTTACTGAt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217634 54 + 83442489 AAAAAAAGTGCGCTACATTCCTATTTTAATGTAGCATTTTGGATATTTACTGAt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052796 54 + 4267968 AAAAAAAGTGCGTTACATTCCCATTTTAATGTAGCATTTTGGATATTTACTGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033038 54 - 2193130 AAAAAAAGTGCGTTACATTCCCATTTTAATGTGGCATTTTGGATATTTACTGAt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106579 54 - 77216781 AAAAAAAGTGCCTAACATTCCCATTTTAATGTAGGGTTTTGGATATTTACTGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018230 54 - 80997621 AAAAAAAGTGCCTAACATTCCCATTTTAATGTAGGGTTTTGGATATTTACTGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075943 54 + 10377808 AAAAAAAGTGCCTAACATTCCCATTTTAATGTAGGGTTTTGGATATTTACTGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960855 54 - 8458610 AAAAAAAGTGTCTAACATTCCCATTTTAATGTAGGGTTTTGGATATTTACTGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906067 54 + 75148670 TAAAAAAGTGCCTAACATTCCCATTTTAATGTAGGGTTTTGGATATTTACTGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145881 54 + 4244037 TAAAAAAGTGCCTAACATTCCCATTTTAATGTAGGGTTTTGGACATTTACTGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168615 54 + 4569836 AAAAAAAGTGCCTAACATTCCCATTTTAATGTAGGGTTTTGGATATTTACTGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124805 54 - 159171411 TAAAAAAGTGACTAACATTCTCATTTTAATACAGCACTTTGGATATTTACTGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834772 54 + 3513951 AAAAAAAGTGCCTAACATTTTCATTTTAATACAGCATTTTGGATATTTACGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883424 54 + 1920343 AAAAAAAGTGCCTAACATTCTCATTTTAATACAGCATTTTGGATATTTACTGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999827 54 - 7032639 AAAAAAAGTGCCTAACATTCTTATTTTAATACAGCATTTTGGATATTTACTGAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919647 54 - 65901067 CAAAAAAGTGCACGTGATTCCTATTTTAATGCAGTATTTTGGATATTTAGTGAT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3006319 54 + 8555354 CAAAAAAGGGCACAATATTCCTATTCTAATGCAGTATTTTTGATATTTAGTGAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22827398 51 + 28711273 AAAAAGAATGCA--ACATCCTCATTTTAATGCAGTGTTTTGGATG-TTAGCAGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21439949 54 + 61074082 AAAAAAAGTGTACAATGTTCCCATCTTTATGTGATGGTTTGAATAGTCAATGAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 435724 50 - 852752 aaaaaAAGTGCACAACATTCCCATTTAAAT----CGTTTTCTATATTTCATGAT i dasNov3.JH570468 I 432 C 0 e mm10.chr11 22086713 1016 - 122082543 I a score=145641.000000 s hg38.chr17_GL383564v2_alt 123714 9 + 133151 ctccttcct s panTro5.chr17 16312821 9 + 83181570 ctccttcct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217688 9 + 83442489 ctccttcct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052850 9 + 4267968 Ctccttcct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033092 9 - 2193130 ctccttcct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106633 9 - 77216781 CTCCTTCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018284 9 - 80997621 CTCCTTCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2075997 9 + 10377808 Ctccttcct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960909 9 - 8458610 CTCCTTCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906121 9 + 75148670 Ctccttcct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145935 9 + 4244037 Ctccttcct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168669 9 + 4569836 Ctccttcct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124859 9 - 159171411 Ctccttcct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834826 9 + 3513951 Ctccttcct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883478 9 + 1920343 Ctccttcct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999881 9 - 7032639 Ctccttcct i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919701 9 - 65901067 CTCcttcct i micMur3.chr16 C 0 I 182 s proCoq1.NW_012135969v1 3006373 9 + 8555354 ctcctccct i proCoq1.NW_012135969v1 C 0 I 87 s otoGar3.GL873537 22827449 6 + 28711273 CTTctc--- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22087729 9 - 122082543 ctccttcct i mm10.chr11 I 1016 C 0 s canFam3.chr9 21440003 3 + 61074082 ---ctt--- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 435774 9 - 852752 CTGCCtcct i dasNov3.JH570468 C 0 C 0 a score=976591.000000 s hg38.chr17_GL383564v2_alt 123723 91 + 133151 ----gctttcttctttcttttc--ttctttcctttcttcctcccc-------ttctcctcttcttcct-cctcctgcatctcttccttcCCCGGTCAAGGAAAGG s panTro5.chr17 16312830 91 + 83181570 ----gctttcttctttcttttc--ttctttcctttcttcctcccc-------ttctcctcttcttcct-cctcctgcatctcttccttcCCCGGTCAAGGAAAGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217697 91 + 83442489 ----gctttcttctttcttttc--ttctttcctttcttcctcccc-------ttctcctcttcttcct-cctcctgcatctcttccttcCCCGGTCAAGGAAAGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052859 91 + 4267968 ----gctttcttctttcttttc--ttctttcctttcttcctccgc-------ttctcctcttcttcct-cctcctgcatctcttccttcCCTGGTCAAGGAAAGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033101 91 - 2193130 ----gctttcttctttcttttc--ttctttcctttcttcctcccc-------tcctcctgttcttcct-cctcctgcatctcttccttcCCCGGTCAAGGAAAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106642 91 - 77216781 ----GCTTGCTTCCTTCTTTTC--TTCTTTCCTTTCTTCCTCTCC-------TTCTCCTCTTCTTCCT-CTTCCTGCATCTCTTCCTTTCCCCATCAAGGAAAGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018293 91 - 80997621 ----GCTTGCTTCCTTCTTTTC--TTCTTTCCTTTCTTCCTCTCC-------TTCTCCTCTTCTTCCT-CTTCCTGCATCTCTTCCTTTCCCCATCAAGGAAAGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076006 91 + 10377808 ----gcttgcttccttcttttc--ttctttcctttcttcctctcc-------ttctcctcttcttcct-cttcctgcatctcttccttTCCCCATCAAGGAAAGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1960918 91 - 8458610 ----GCTTGCTTCCTTCTTTTC--TTCTTTCCTTTCTTCCTCTCC-------TTCTCCTCTTCTTCCT-CTTCCTGCATCTCTTCCTTTCCCCATCAAGGAAAGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906130 91 + 75148670 ----gcttgcttccttcttttc--ttctttcctttcttcctctcc-------ttctcctcttcttcct-cttcctgcatctcttccttTCCCCATCAAGGAAAGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2145944 91 + 4244037 ----gcttgcttccttcttttc--ttctttcctttcttcctctcc-------ttctcctcttcttcct-cttcctgcatctcttccttTCCCCATCAAGGAAAGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168678 91 + 4569836 ----gcttgcttccttcttttc--ttctttcctttcttcctctcc-------ttctcctcttcttcct-cttcctgcatctcttccttTCCCCATCAAGGAAAGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124868 79 - 159171411 ----gcttgcttccttctt--------------ttcttcctcttt-------ttctcctcttcttcct-cctcctgcatgttttccttGCCCTGTCAAGGAAAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834835 59 + 3513951 ----gcttgcttccttctt-----------------------------------------ttcttcct-cctcctgcatcttttccttccCCTGTCAAGGAAAAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883487 91 + 1920343 ----gcttgcttccttcttttc--ttccttcctttcttcctcttt-------ttctcctcttcttcct-cctcctgcatcttttccttccCCTGTCAAGGAAAGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999890 91 - 7032639 ----gcttgcttccttcttttc--ttccttcctttcttcctcttt-------ttctcctcttcttcct-cctcctgcatcttttccttccCCTGTCAAGGAAAGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22827455 73 + 28711273 -----cctctgtcagtccctcc--ctgccttcctgccttctttcc-------ttatcctcttcttcccaccttGTACA------------------GAGGAAGGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22087738 93 - 122082543 ----ccttccttccctcatttcctttccttacttcattctttctt-------ttctctccctcctccc-ttcccttcctCATCTCCATCTTCCATTATAGAAAGG i mm10.chr11 C 0 C 0 s canFam3.chr9 21440006 70 + 61074082 ----tcttccttccttcctttc--ttcttccctCTCCTCCACCTC-------CCCTCCTCCATCTCCT----------------------TCCATCAAGGAAAGG i canFam3.chr9 C 0 I 556 s dasNov3.JH570468 435783 101 - 852752 tctttccttctttcctcccccc--ttcctccctcccttccccttcctgccctctctcctCTTCCATCT-CCTCCT-CCTCTTTGCCTTCTTCTATCCAGGGAAGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3006382 87 + 8555354 I e micMur3.chr16 35919710 182 - 65901067 I a score=314756.000000 s hg38.chr17_GL383564v2_alt 123814 28 + 133151 -CCTGGGGCTGGAGTGGGGGTGGGTAGAG s panTro5.chr17 16312921 28 + 83181570 -CCTGGGGCTGGAGTGGGGGTGGGTAGCG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217788 28 + 83442489 -CCTGGGGCTGGAGTGGGGGTGGGTAGCG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052950 28 + 4267968 -CCTGGGGCTGGAGTAGGGGTGGGTAGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033192 28 - 2193130 -CCTGGGGCTGGAGTAGGGGTGGGTAGAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106733 28 - 77216781 -CCTGGGGCTGGAGTGGGGGTGGGTAGAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018384 28 - 80997621 -CCTGGGGCTGGAGTGGGGGTGGGTAGAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076097 28 + 10377808 -CCTGGGGCTGGAGTGGGGGTGGGTAGAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961009 28 - 8458610 -CCTGGGGCTGGAGTGGGGGTGGGTAGAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906221 28 + 75148670 -CCTGGGGCTGGAGTGGGGGTGGGTAGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146035 28 + 4244037 -CCTGGGGCTGGAGTGGGGGTGGGTAGAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168769 28 + 4569836 -CCTGGGGCTGGAGTGGTGGTGGGTAGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124947 28 - 159171411 -CCTGGGGCTGGAGTGGGGATGGGTAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834894 28 + 3513951 -CCTGGGGCTGGAGTGGGGATGGGTACAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883578 28 + 1920343 -CCTGGGGCTGGAGTGGGGATGGGTAGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 6999981 28 - 7032639 -CCTGGGGCTGGAGTAGGGATGGGTAGAG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22827528 20 + 28711273 -CCTGGGGCTGGA--------GGATTGTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22087831 19 - 122082543 -TCTGGGGCTG---------TGGGTAGCA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 435884 13 - 852752 CCCTGGGTCTGGG---------------- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3006382 87 + 8555354 I e micMur3.chr16 35919710 182 - 65901067 I e canFam3.chr9 21440076 556 + 61074082 I a score=221234.000000 s hg38.chr17_GL383564v2_alt 123842 19 + 133151 GGTTCTGATCTCAGT-TCTT s panTro5.chr17 16312949 19 + 83181570 GGTTCTGATCTCAGT-TCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217816 19 + 83442489 GGTTCTGATCTCAGT-TCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052978 19 + 4267968 GGTTCTGATCTCAGT-TCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033220 19 - 2193130 GGTTCTGATCTCTGT-TCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106761 20 - 77216781 GGTTCTGATTTCAGTTTCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018412 20 - 80997621 GGTTCTGATTTCAGTTTCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076125 20 + 10377808 GGTTCTGATTTCAGTTTCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961037 20 - 8458610 GGTTCTGATTTCAGTTTCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906249 20 + 75148670 GGTTCTGATTTCAGTGTCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146063 20 + 4244037 GGTTCGGATTTCAGTTTCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168797 20 + 4569836 GGTTCTGATTTCAGTTTCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124975 19 - 159171411 GGTTCTGACCTCGGT-TCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834922 19 + 3513951 GGTTCTGACCTCAGT-TCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883606 19 + 1920343 GGTTCTGACCTCTGT-TCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000009 19 - 7032639 GGTTCTGACCTCAGT-TCTT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3006469 19 + 8555354 GGTTCTGACCACAGC-TCTT i proCoq1.NW_012135969v1 I 87 C 0 s otoGar3.GL873537 22827548 19 + 28711273 GGTTCTGACTACAGC-TCTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22087850 19 - 122082543 GGTGCTGCCCTGAGT-TCTT i mm10.chr11 C 0 C 0 s dasNov3.JH570468 435897 19 - 852752 ACTTCTGACCCCTGC-TCCC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35919710 182 - 65901067 I e canFam3.chr9 21440076 556 + 61074082 I a score=922823.000000 s hg38.chr17_GL383564v2_alt 123861 75 + 133151 CCCACCTATTTAGAGAGAAGTGCGAAT----ATTCAGCTCACCTTGCCGCCGAGACAGACCATGCCTT-ACCAGCTTCTT s panTro5.chr17 16312968 75 + 83181570 CCCACCTATTTAGACAGAAGTGCGAAT----ATTCAGCTCACCTTGCCGCCGAGACAGACCATGCCTT-ACCAGCTTCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217835 75 + 83442489 CCCACCTATTTAGACGGAAGTGCGAAT----ATTCAGCTCACCTTGCCGCCGAGACAGACCATGCCTT-ACCAGCTTCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4052997 75 + 4267968 CCCACCTATTTAGAGAGAAGTGCGAAT----ATTCAGCTCACCTTGCCGCCGAGACAGACCATGCCTT-ACCAGCTTCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033239 75 - 2193130 CCCACCTATTTAGAGAGAAGTGCGAGT----ATTCAGCTCACCTTGCAGCCGAGACAGACCATGCCTT-ACCAGCTTCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106781 75 - 77216781 CCCATCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCACGTAGCCAAGACAGACCGTGCCTC-ACCAGCTTCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018432 75 - 80997621 CCCATCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCACGTAGCCAAGACAGACCGTGCCCC-ACCAGCTTCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076145 75 + 10377808 CCCATCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCACGTAGCCAAGACAGACCGTGCCTC-ACCAGCTTCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961057 75 - 8458610 CCCATCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCACGTAGCCAAGACAGACCGTGCCTC-ACCAGCTTCTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906269 75 + 75148670 CCCACCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCATGGAGCCAAGACAGACCGTGCCTC-ACCAGCTTCTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146083 75 + 4244037 CCCATCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCACGTAGCCAAGACAGACCGTGCCTC-ACCAGCTTCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168817 75 + 4569836 TGCACCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCATGTAGCCAAGACAGACCGTGTCTC-ACCAGCTTCTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46124994 75 - 159171411 CCCACTTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCATGCAGCAGAGAGAGACCGTACCTC-ACCGGCTTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1834941 75 + 3513951 CCCAACTATTTAGAGAGAAGTGTGAGT----ATTCAACTGACCATTCAGCAGAGATAGACCGTGCCTC-ACTGGCTTCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883625 75 + 1920343 CCCACCTACTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCATGCAGCAGAGATAGACCGTGCCTC-ACCAGCTTCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000028 75 - 7032639 CCCACCTATTTAGAGAGAAGTGTGAGT----ATTCAGCTCACCATGCAGCAGAGATAGACCGTGCCTC-ACCGGCTTCTT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3006488 74 + 8555354 CCCACCTGTTTAGAGAGACGTGTGAGC----GTTCAGTTCGCTGTGCC-CCGAGAGAGAACGTGGCTC-TCCAGCCTCCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22827567 73 + 28711273 CCCACCTGTTGAGGGAGACACGTGC-T----GGTCAGTCCACCGCACA-CCCAGAGAGAACGTGGCTG-TCCCGCCTCTT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22087869 73 - 122082543 CCTGCCTACATAGGGAGAAGTAAGAAG----GTTCACTTTATCT--CAGCTTAGAGAGAATGCGGCTC-CCCAGCCTTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21440632 77 + 61074082 CCTACTTAGTTAGAGAGGAGTATGAGTGTTCATTCAGTTCACCACAAGGCCAAGGGAGAACGTGGCT---CCCGCCTCTT i canFam3.chr9 I 556 C 0 s dasNov3.JH570468 435916 68 - 852752 -CAGGCCCTTTACAGGGAAGTGCGAGG----CTTCAGTTCACTGTCCAG-------AGAACGTGACTCTTCCGGGCTCTT i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35919710 182 - 65901067 I a score=2116463.000000 s hg38.chr17_GL383564v2_alt 123936 121 + 133151 GCAGCTTTACGATGAGTCTCTCTCGGTTTCACAGGGCAGTTATTACTCATGACTGATGCTCACCGGCCAAGCCTA----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC s panTro5.chr17 16313043 121 + 83181570 GCAGCTTTACGATGAGTCTCTCTCCGTTTCACAGGGCAGTTATTACTCATGACTGATGCTCACCGGCCAAGCTTA----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16217910 121 + 83442489 GCAGCTTTACGATGAGTCTCTCTCCGTTTCACAGGGCAGTTATTACTCATGACTGATGCTCACCGGCCAAGCTTA----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053072 121 + 4267968 GCAGCTTTACGATGAGTCTCTCTCCGTTTCACAGGGCAGTTATTACTCAAGACTGATGCTCACCGGCCAAACCTA----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033314 121 - 2193130 GCAGCTTTACGATGAGTCTCTCTCTGTTTCACAGGGCAGTTATTACTCATGATTGATGCTCATCGGCCAAGCCTA----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATCTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106856 121 - 77216781 GCAGCTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCTA----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACACCTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018507 121 - 80997621 GCAGCTTTATGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCTA----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACACCTGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076220 121 + 10377808 GCAGCTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCTA----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACACCTGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961132 121 - 8458610 GCAGCTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCTA----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATCTGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906344 121 + 75148670 GCAGCTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCTA----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATCTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146158 121 + 4244037 GCAGCTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCACGCCTA----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATCTGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2168892 121 + 4569836 GCAGCTTTACGATGAGTCTGTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCTA----AATGGGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125069 120 - 159171411 GCAGTTTTACCATGAGTCTCTCTCCATTTTACAGGGCAGTTATTACTCATGATTGATGATCACGGGCCAAGCCT-----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835016 120 + 3513951 GCAATTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGTTCAGGGGCCAAACCT-----AATGTGTGGCACAC-TCCACATACCACACACA--GACACAAACATTTGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883700 120 + 1920343 GCAGTTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGAGCCAAGCCT-----AATGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000103 120 - 7032639 GCAGTTTTACGATGAGTCTCTCTCCATTTCACAGGGCAGTTATTACTCATGATTGATGCTCACGGGCCAAGCCT-----AACGTGTGGCACAC-TCCCCATACCACACACA--GACACAAACATTTGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35919892 125 - 65901067 GCAGTTTTATGATGAGTCTCTCTTCGTTTCCCGGGCCAGTCATTACTCGTGATTGACACTCACCGACCAAGCCCAAACGAATGTGTGGCACAC-TGCACATACCACACGCA--GGCACAAATATTTGC i micMur3.chr16 I 182 I 213 s proCoq1.NW_012135969v1 3006562 125 + 8555354 GCAGTTTTATGATGAGTCTCTCTTCGTTTCGAGGGCCAGTCATTACTCGTGATTGATACTCACCGACCAAGCCCAAACGAATGTGTGGCACAC-TCCGCATACCGCACGCA--GGCACAAATATTTGC i proCoq1.NW_012135969v1 C 0 I 3 s otoGar3.GL873537 22827640 125 + 28711273 GCAGTTTTATGATGAGTCTCTCTTTGTTTCATAGGCCGGTTATTACTCCTGATTGATACTCACTGACCAAGTCCAAACAGACGTGTGGCACAC-TCCACCTACCACACGCA--GACACAAATATTTGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22087942 126 - 122082543 GCAGTTTTATGGTGAGTCTATCTGCATTTCACAAGTCAGTTATTACTCGTGATTGATGCTCACCTGCCAAGCCTAAATAAACGTGCAGCTCACATCCACATACCTCACACA--GACACAAATATTTGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21440709 121 + 61074082 GCAGTTTTATGATGAGTCTTT----ATTTCACAAGGCAGTTATTAATCATGACTGATGCTCACTGACCAAGCCCAAACAATTGTGTGGCACAC-TCCACATACCACACACA--GTCACAAATGTTTGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 435984 123 - 852752 -GAGTTTTA---TGAGTCTCTCTCCCTTTCAAAGGGCAGTTATTACTCATGATTGATGCTCACTGACCAAGCCCAAACAAACGTGGGGCACAC-TTCACATGCCACACACACGGGCACAAATATTTGC i dasNov3.JH570468 C 0 C 0 a score=262557.000000 s hg38.chr17_GL383564v2_alt 124057 21 + 133151 CTGGCTCACATG-AACCGGGAT s panTro5.chr17 16313164 21 + 83181570 CTGGCTCACATG-AACCGGGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218031 21 + 83442489 CTGGCTCACATG-AACCGGGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053193 21 + 4267968 CTGGCTCACATG-AACCGGGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033435 21 - 2193130 CTGGCTCACATG-AACTGGGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106977 21 - 77216781 CTGGCTCACATG-AACCGGGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018628 21 - 80997621 CTGGCTCACATG-AACCGGGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076341 21 + 10377808 CTGGCTCACATG-AACCGGGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961253 21 - 8458610 CTGGCTCACATG-AACCGGGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906465 21 + 75148670 CTGGCTCACGTG-AACCGGGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146279 21 + 4244037 CTGGCTCACATG-AACCGGGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169013 21 + 4569836 CTGGCTCACATG-AGCCGGGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125189 21 - 159171411 CTGGCTCGCATG-GGCCAGGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835136 21 + 3513951 CTGGCTCGCATG-GGCCGGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883820 21 + 1920343 CTGGCTCGCATG-GGCCAGGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000223 21 - 7032639 CTGGCTCGCATG-GGCCAGGAT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22827765 22 + 28711273 CTTACTCACAGGTAGGCAAGGT i otoGar3.GL873537 C 0 I 4 s mm10.chr11 22088068 20 - 122082543 TTTGCTCACATG-GCTGGGGA- i mm10.chr11 C 0 C 0 s canFam3.chr9 21440830 21 + 61074082 TTTGCTCACATG-GGCTGGCAT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 436107 21 - 852752 CTTACTCACATG-GGCTGGGCT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3006687 3 + 8555354 I e micMur3.chr16 35920017 213 - 65901067 I a score=595578.000000 s hg38.chr17_GL383564v2_alt 124078 39 + 133151 GAGGATGCCATTTCCACCTGGGA------------------------GGAGCCACGTGACCAG s panTro5.chr17 16313185 39 + 83181570 GAGGATGCCATTTCCACCTGGGA------------------------GGAGCCACGTGACCAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218052 39 + 83442489 GAGGATGCCATTTCCACCTGGGA------------------------GGAGCCACGTGACCAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053214 39 + 4267968 GAGGATGCCATTTCCACCTGGGA------------------------GGAGCCACGTGACCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033456 39 - 2193130 GAGGATGCCATTTCCACCTGGGA------------------------GGAGCCACGTGACCAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30106998 39 - 77216781 GAGGATGCCATTTCCACCTGGGA------------------------GAAGCCACGTGATCAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018649 39 - 80997621 GAGGATGCCATTTCCACCTGGGA------------------------GAAGCCACGTGATCAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076362 39 + 10377808 GAGGATGCCATTTCCACCTGGGA------------------------GAAGCCACGTGATCAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961274 39 - 8458610 GAGGATGCCATTTCTACCTGGGA------------------------GAAGCCACGTGATCAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906486 39 + 75148670 GAGGATGCCATTTCCACCTGGGA------------------------GAAGCCACGGGATCAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146300 39 + 4244037 GAGGATGCCATTTCTACCTGGGA------------------------GAAGCCACGTGATCAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169034 39 + 4569836 GAGGATGCCATTTCCACCTGGGA------------------------GAAGCCACGTGATCAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125210 39 - 159171411 GAGGATTCCATTTGAACCTGGGA------------------------GGAGCCACGTGACCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835157 39 + 3513951 GAGGATGCCATTTCTACCTGGGA------------------------GGAGCCAGGTGAGCAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883841 39 + 1920343 GAGGATGCCATTTCTACCTGGGA------------------------GGAGCCACGTGACCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000244 39 - 7032639 GAGGATGCCATTTCTACCTGGGA------------------------GCAGCCATGTGACTAG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3006690 39 + 8555354 GAGGATGCCATTTGCACCCGGGA------------------------GGAGTCACACGACCAG i proCoq1.NW_012135969v1 I 3 I 154 s otoGar3.GL873537 22827791 63 + 28711273 GAGGATGCCATTTCCACCTAGGACTgcagttctcaacctgtgggtcgcgacccacaagaactg i otoGar3.GL873537 I 4 C 0 s mm10.chr11 22088088 38 - 122082543 GAGAATGCTA-TTCTGCCAGGGA------------------------GGACCCACAGCGTCAG i mm10.chr11 C 0 I 1 s canFam3.chr9 21440851 39 + 61074082 GAGGATGCCATTTCCGCCTGGGA------------------------GGAGCCACCGGACCAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 436128 39 - 852752 GAGGACACCATTTCTACCCGGGA------------------------GGAGCCACCGGACCAG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35920017 213 - 65901067 I a score=1739800.000000 s hg38.chr17_GL383564v2_alt 124117 160 + 133151 -GCGTTCTCA-------GTAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGAGCATTCGGCTGTTGCCGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCGCCA----------------------ACC--TGC-------GAAGATGTGGAAGGCAAGCCCCTCATTCCAGAGCCAGAAGCTGTGGCCGG s panTro5.chr17 16313224 160 + 83181570 -GCGTTCTCA-------GTAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGAGCATTCGGCTGTTGCCGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCGCCA----------------------ACC--TGC-------GAAGATGTGGAAGGCAAGCCCCTCATTCCAGAGCCAGAGGCTGTGGCCGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218091 160 + 83442489 -GCGTTCTCA-------GTAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGAGCATTCGGCTGCTGCCGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCGCCA----------------------ACC--TGC-------GAAGATGTGGAAGGCAAGCCCCTCATTCCAGAGCCAGAGGCTGTGGCCGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053253 160 + 4267968 -GCGTTCTCA-------GTAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGAGCATTCGGCTGTTGCCGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCGCCA----------------------ACC--TGC-------GAAGATGTGGAAGGCGAGCCCCTCATTCCAGAGCCAGAGGCTGTGGCCGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033495 160 - 2193130 -GCATTCTCA-------GTAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGGGCATTCGGCTGTTGCCAGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCGCCA----------------------ACC--TGT-------GAAGATGTGGGAGGTGAGCCCCTCATTCCAGAGCCAGAGGCTGTGGCCGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30107037 159 - 77216781 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGGGCATTCGGCTGTTGCGGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACC--TGG-------GAAGATGTGGGAGGTGAGCGCCTCATTCCAGAGCCAGAGGCTGTGG-CGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018688 159 - 80997621 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGGGCATTCGGCTGTTGCGGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACC--TGG-------GAAGATGTGGGAGGTGAGCGCCTCATTCCAGAGCCAGAGGCTGTGG-CGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076401 159 + 10377808 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGGGCATTCGGCTGTTGCGGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACC--TGG-------GAAGATGTGGGAGGTGAGCGCCTCATTCCAGAGCCAGAGGCTGTGG-CGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961313 159 - 8458610 -GCCTTCTCA-------GTAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAAGAGGGCATTCGGCTGTTGCGGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACC--TGG-------GAAGATGTGGGAGGTGAGCGCCTCATTCCAGAGCCAGAGGCTGTGG-CGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906525 159 + 75148670 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAACAGGGCATTCGGCTGTTGCGGGTCTGCCTTTCCGGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACC--TGG-------GAAGATGCGGGAGGTGAGCGCCTCATTCCAGAGCCAGAGGCTGTGT-CGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146339 159 + 4244037 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCAGGGGGAAGAGGGCATTCGGCTGTTGCGAGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACC--TGG-------GAAGATGTGGGAGGTGAGCGCCTCATTCCAGAGCCAGAGGCTGTGG-CGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169073 159 + 4569836 -GCCTTCTCA-------GTAGCCT---------------CCATTG---------------------------GTGTCAGGGGGAACAGGGCATTTGGCTGTTGCTGGTCTGCCTTTCCAGGACTAGCATCCATGG--AAGATGG-----GGTCCATCACCA----------------------ACT--TGG-------GAAGATGTGGGAGATAAGCACCTCATTCCAGAGCCAGAGGCTGTGG-CAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125249 160 - 159171411 -GCTTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCGGAAGGAACAGGGCATTTGGTTATCGCCGGTCTGCTTTTCCAGGACTAGCATCCACAG--AAGATGG-----GGTCCACTGCCA----------------------ACC--TGT-------GAAGATGCAGGAGGTGAGCCCCTCATTCCGGAGCCAGAGCACGTGGCCGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835196 160 + 3513951 -GCCTTCTCA-------GCAGCCT---------------CCCCTG---------------------------GTGTCGGAAGGAACAGGGCATTTGGTTATTGCCGGTCTGCTTTTCCAGGACTAGCATCCACGG--AAGATGG-----GGTCCACTGCCA----------------------ACC--TGT-------GAAGGTGCAGGCGGTGAGCCCCTCATTCCAGAGCCAGAGCACGTGGCCGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1883880 160 + 1920343 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTCAGAAGGAACAGGGCATTTGGTTATTGCCGGTCTGCTTTTCCAGGACTAGCATCCACAG--AAGATGG-----GGTCCACTGCCA----------------------ACA--TGT-------GAAGATGCAGGAGGTGAGCCCCTCATTCCAGAGCCAGAGGATGTGGCCAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000283 162 - 7032639 -GCCTTCTCA-------GCAGCCT---------------CCACTG---------------------------GTGTTGGAAGGAACAGGGCATTTGGTTATTGCTGGTCTGCTTTTCCAGGACTAGCATCCACGG--AAGATGG-----GGTCCATGGCCA----------------------ACCTTTGT-------GAAGATGCAGGAGGTGAGCCCCTCATTCCAGAGCCAGAGCACGTGGCTGG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22827854 203 + 28711273 -----tcttaaagggtcgcagcattaggaaggttgagaaccactgacctaGGAGGAATCACATGACTAAACCGTGGCAGAAGGAACAGGGCATCCAGATGTTACTGTCCTGGCTTCCCAGGGCTAGCCCCCACCACCAAGAGGGTCTTCTGTCCACATGCC----------------------ACC--AGG-------GAAGATGTGGGAAACGAGCTCCCCATTCCAGAGCCCGAGTC--------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22088127 165 - 122082543 -ACCTCTACT-------GCAGCCT---------------CAAGTG---------------------------TAGGCAGAAGGCTTA------TTCATTCTTACTCTTCAAGTGTTCAAGGGCCAGCATCCATG---AAAACAG-----GCTACATGGCCAACAGAGGGATCTCCTTTTCGCCACT--AGA-------GAAGAGGTGGGAGAGGAG---------CCAGAG-CAGATTCCTTGGCCAG i mm10.chr11 I 1 C 0 s canFam3.chr9 21440890 164 + 61074082 ----ACCTCA---GATAGCAGCTT---------------CTGCCT---------------------------GCGGCAAGAGGCAC-GGGCATCCAGGTTTTACCATTCTGATTTTCCAGAATAAGCATTCATAA--TCAGAGG-----GGTCGGCTGCCA----------------------ACT--TGCCAACAGAGGAGATGTGGAAGGGGAGCACC-CATTCCAGAACCAGAGTCCATGGCT-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 436167 147 - 852752 ACTTTTTCCA-------GCAGCCT---------------CTGCCC---------------------------AGAGCAGAAGCAACCGAGCATCCGGCGTTTGCTGTGCTGGTTTTCCAGGACTAGCAGCTGTGA--GAAGAGG-----GGTC------------------------------AGC--AGA-------AAAGATGTGGGACAGGGGCTCACCGGCCCAGAGCCAGCAGCTGG------ i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3006729 154 + 8555354 I e micMur3.chr16 35920017 213 - 65901067 I a score=184050.000000 s hg38.chr17_GL383564v2_alt 124277 20 + 133151 CTTCCCCTTCCCATCTCCA-A s panTro5.chr17 16313384 20 + 83181570 CTTCCCCTTCCCATCTCCA-A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218251 20 + 83442489 CTTCCCCTTCCCATCTCCA-A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053413 20 + 4267968 CTTCCCCTTCCCATCTCCA-A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033655 20 - 2193130 CTTCCCCTTCCCATCTCCA-A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30107196 20 - 77216781 CTTCTCCCTTCTATCTTCA-A i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018847 20 - 80997621 CTTCTCCCTTCTATCTTCA-A i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076560 20 + 10377808 CTTCTCCCTTCTATCTTCA-A i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961472 20 - 8458610 CTTCCCCCTTCTATCTTCA-A i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906684 20 + 75148670 CTTCCGCCTTCTATCTTCA-A i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146498 20 + 4244037 CTTCCCCCTTCTATCTTCA-A i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169232 20 + 4569836 CTTCCCCCTTCTATCTTCA-A i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125409 20 - 159171411 CTTCCTCCTCCCATCTTCA-A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835356 20 + 3513951 CTTCCCCCTCCCATCTTCA-A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1884040 20 + 1920343 CTTCCCCCTCTCATCTTCA-A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000445 20 - 7032639 CTTCCCCCTCCCATCTTCA-A i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3006883 20 + 8555354 CTTCCCCTTCCTCTCTTCAC- i proCoq1.NW_012135969v1 I 154 C 0 s otoGar3.GL873537 22828057 1 + 28711273 ------------------A-- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22088292 19 - 122082543 -CTTCCCTTCCTCTCTCCA-A i mm10.chr11 C 0 C 0 s canFam3.chr9 21441054 8 + 61074082 ------CTTTCCAA------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 436314 19 - 852752 -TTTCCCTTCTTCCATCCA-G i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35920017 213 - 65901067 I a score=8639878.000000 s hg38.chr17_GL383564v2_alt 124297 547 + 133151 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGATAAACAGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAATAAACAGCCAGTTAATGAGCCGGTCTTATGGAAACTTGCATAAATAATAACAAAGAAAACATCCCGTCCCTCATGCC--------TGGGTGA-GGGGATATAAAAGCTGCCATCCAGATGGCTGGCCACCGTCAGTCGT-GGGGAACTCCGGCTGCGTTACCGACCTGCGAGCTGACGGGCCCGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GGCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------TGGC---TGTGGGGGCTCTGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------AGCTGCTGCGGATCGTCTTGCTGTGGATCT------------------ggctgcgga---ggctgtgga---ggctgcggaggctgcggGGGTGGCTGCT---GTGGATCC s panTro5.chr17 16313404 547 + 83181570 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGATAAACAGTAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAATAAACAGCCAGTTAATGAGCCGGTCTTATGGAAACTTGCATAAATAATAACAAAGAAAACATGCCGTCCCTCATGCC--------TGGGTGA-GGGGATATAAAAGCTGCCATCCAGCTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACGGGCCCGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAACAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GGCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------TGGC---TGTGGGGGCTCTGGCTGTGGGGGCTCTGGCTGCGGGGGC---------------AGCTGCTGCGGATCGTCTTGCTGTGGATCT------------------ggctgcgga---ggctgtgga---ggctgcggaggctgcggGGGTGGCTGCT---GTGGATCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218271 547 + 83442489 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGATAAACAGTAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAATAAACAGCCAGTTAATGAGCCGGTCTTATGGAAACTTGCATAAATAATAACAAAGAAAACATGCCGTCCCTCATGCC--------TGGGTGA-GGGGATATAAAAGCTGCCATCCAGCTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACGGGCCCGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAACAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GGCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------TGGC---TGTGGGGGCTCTGGCTGTGGGGGCTCTGGCTGCGGGGGC---------------AGCTGCTGCGGATCGTCTTGCTGTGGATCT------------------ggctgcgga---ggctgtgga---ggctgcggaggctgcggGGGTGGCTGCT---GTGGATCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053433 547 + 4267968 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGATAAACAGCAGTTGGCGGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAATAAACAGCCAGTTAATGAGCCGGTCTTATGGAAACTTGCATAAATAATAACAAAGAAAACATCCCGTCCCTCATGCC--------TGGGTGA-GGGGATATAAAAGCTGCCATCCAGCTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACGGGCCCGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACTTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GGCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------TGGC---TGTGGGGGCTCTGGCTGTGGGGGCTCTGGCTGCGGGGGC---------------AGCTGCTGCGGATCGTCTTGCTGTGGATCT------------------ggctgcgga---ggctgtgga---ggctgcggaggctgcggGGGTGGCTGCT---GTGGATCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2033675 553 - 2193130 CCTGGGCTAATGACAGCTGGCAGATGCCTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGATAAACAGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAATAAACAGCCAGTTAATGAGCCGGTCTTATGGAAACTTGCATAAATAATAACAAAGAAAACATCCCGTCCCTTGTGCC--------TGGGTGA-GGGGATATAAAAGCAGCCATCCAGCTGGCTGGCCACGGTCAGTCGT-GGGGAACTCTGGCTGCATTACTGACCTGCGAGCTGACGGGCCCGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCGGCctgctgtggctgctgtgactgctgtggctcctgctgt---------------------------ggctgcGGCGGCTC------TGGC---TGTGGGGGCTCTGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------AGCTGCTGCGGATCGTCTTGCTGTGGATCT------------------------------------------GGCTGCGGAGGCTGCGGGGGTGGCTGCT---GTGGATCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30107216 543 - 77216781 CCTAGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTGGGGC--G-TTTTATGAGTTGAGGTACT-CAGGACCGGAAAACAAACAGCCAGTTAATGAGCCGGTCTTATGGCAACTTGCACAAATAATAACAAAGAAAACATCCCGTCCCTCGTGCC--------TGGGTGA-GGGGATATAAAAGCTGCCGTCCAACTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACAGGCCGGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------GGCTGCTGCGGATCATCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga---ggctgcgggggctgcgggggTGGCTGCT---GCGGATCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28018867 543 - 80997621 CCTAGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTGGGGC--G-TTTTATGAGTTGAGGTACT-CAGGACCGGAAAACAAACAGCCAGTTAATGAGCCGGTCTTATGGCAACTTGCACAAATAATAACAAAGAAAACATCCCGTCCCTCGTGCC--------TGGGTGA-GGGGATATAAAAGCTGCCGTCCAACTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACAGGCCGGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------GGCTGCTGCGGATCATCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga---ggctgcgggggctgcgggggTGGCTGCT---GCGGATCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2076580 543 + 10377808 CCTAGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTGGGGC--G-TTTTATGAGTTGAGGTACT-CAGGACCGGAAAACAAACAGCCAGTTAATGAGCCGGTCTTATGGCAACTTGCACAAATAATAACAAAGAAAACATCCCGTCCCTCGTGCC--------TGGGTGA-GGGGATATAAAAGCTGCCGTCCAACTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACAGGCCGGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------GGCTGCTGCGGATCATCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga---ggctgcgggggctgcggGGGTGGCTGCT---GCGGATCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1961492 544 - 8458610 CCTAGGCTAATGACAACTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACCGGAAAACAAACAGTCAGTTAATGAGCCGGTCTTATGGCAACTTGCACAAATAATAACAAATAAAACATCCCGTCCCTCGTGCC--------TGGGTGA-GGGGATATAAAAGCTGCCGTCCAACTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACAGGCCGGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------GGCTGCTGCGGATCATCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga---ggctgcgggggctgcgggggTGGCTGCT---GTGGATCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64906704 544 + 75148670 CCTTGGCTAATGACAGCTGGCCGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAACAAACAGCCAGTTGATGAGCCGGTCTTATGGAAACTTGCACAAATAATAACAAAGAAAACATCCCGTCCCTCGTGCC--------TGGGTGA-GGGGATATAAAAGCTGCCGTCCAACTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCATTACTGACCTGCGAGCTGACAGGCCAGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGCTCTGGCTGCGGGGGC---------------GGCTGCTGCGGATCGTCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga---ggctgcgggggctgcggGGGTGGCTGCT---GCGGATCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2146518 544 + 4244037 CCTAGGCTAATGACAACTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTAGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACCGGAAAACAAACAGTCAGTTAATGAGCCGGTCTTATGGCAACTTGCACAAATAATAACAAATAAAACATCCCGTCCCTCATGCC--------TGGGTGA-GGGGATATAAAAGCTGCCATCCAACTGGCTGGCCACGGTCAGTTGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACAGGCCGGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGTTCTGGCTGCGGGGGC---------------GGCTGCTGCGGATCATCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga---ggctgcgggggctgcggGGGTGGCTGCT---GTGGATCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169252 535 + 4569836 CCTAGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTTGAGGTACT-CAGGACTGGAAAATAAACAGCCAGTTAATGAGCCAGTCTTATGGAAACTTGCATAAATAATAACAAAGAAAACATCCTGTCCCTCGTGCC--------TGGGTGA-GGGGATATAAAAGCTGCCGTCCAGCTGGCTGGCCACGGTCAGTCGT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACAGGCCAGGACCATGGGATGCTGCCCGGGGGATTGCTTCACCTGCTGCACCCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGTGGCTGCTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGCGGGGGCTCTGGCTGCGGGGGT---------------GGCTGCTGCGGATCATCCTGCTGTGGATCT---GGCTGCGGG---GGTggctgcgga---ggctgcgga------------ggctgcggGGGTGGCTGCT---GCGGATCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125429 549 - 159171411 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTGCTTGTCGAAGATGTATTTTTACCCTCTGGACAAACGGCAGTTGGCAGGAGTGGGGC--ATTTTTATGAGTTGAGGTACT-CAGGGCTGGAAAATAAACAGCCAGTTAATGAGCTGGTCTTATGGAAACTGGCATAAATAATAACAAAGAAAGCATCCTGTCCCTCCTGCG--------TGGGTGA-GGGGATATAAAAGCTG-----CAGCTGGCTGGCCTCTGTCAGTCTT-GGGGAACTCTGGCTGCGTTACTGACCTGAGAGCTGACCGGCTGGGATCATGGGGTGCTGCCCTGGGGACTGCTTCACCTGCTGCACTCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGCGGCTGTTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGTGGGGGCTCTGGCTGCGGGGGCTCTGGCTGCGGGGGTGGCTGCTGTGGATCGTCCTGCTGTGGATCT---GGCTGCGGG---Ggt------gga---ggctgtgga---ggctgcggaggctgtggaggTGGCTGCT---GCGGGTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835376 540 + 3513951 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCACGATGACTGGTGTTTGTCGAAGATGTATTTTTACCCTCTGGACAAATGGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTCGAGGTACT-CAGGGCTGGAAAATAAACAGTCAGTTAATGAGCCGGTCTTATGGAAACTGGCATAAATAATAACAAAGAAAGCATCCTGTCCCTCATGCG--------TGGGTGA-GGGGATATAAAAGCTG-----CAGCTGGCTGGCCACGGTCAGTCTT-GGGGAGCTCCGGCTGCGTTACTGACCTGAGAGCTGACCGGCTGGGATCATGGGGTGCTGCCCTGGGGACTGCTTCACCTGCTGCACTCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGCGGCTGTTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGTGGGGGCTCTGGCTGCGGGGGCTCTGGCTGCGGGGGCAGCTGCTGTGGATCGTCCTGCTGTGGATCT---GGCTGTGGG---G------------------GTGGA---GGCTGCGGAGGCTGCGGAGGTGGCTGCT---GCGGGTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1884060 534 + 1920343 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTGTTTGTCGAAGATGTATTTTTACCCTCTGGACAAACGGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTCGAGGTACT-CAGGGCTGGAAAATAAACAGTCAGTTAATGAGCCGGTCTTATGGAAACTGGCATAAATAATAACAAAGAAAGCATCCTGTCCCTCATGCG--------TGGGTGA-GGGGATATAAAAGCTG-----CAGCTGGCTGGCCACGGTCAGTCTT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACCAGCTGGGATCATGGGGTGCTGCCCTGGGGACTGCTTCACCTGCTGCACTCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCA---------GCCTGCTGTGGCTGTTGTGGCTCCTGCTG------------------------------------------------------------------CGGCTGTGGGGGCTCTGGCTGCGGGGGC---------------GGCTGCTGTGGATCGTCCTGCTGTGGATCT---GGCTGCGGG---GGT------gga---ggctgcgga---ggctgcggaggctgcggaggTGGCTGCT---GCGGGTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000465 525 - 7032639 CCTGGGCTAATGACAGCTGGCAGATGCTTGGCCATGATGACAGGTGTTTGTCGAAGATGTATTTTTACCCTCTGGACAAACGGCAGTTGGCAGGAGTGGGGC--GTTTTTATGAGTCGAGGTACT-CAGGGCTGGAAAATAAACAGTCAGTTAATGAGCCGGTCTTATGGAAACTGGCATAAATAATAACAAAGAAAGCATCCTGTCCCTCATGCG--------TGGGTGA-GGGGATATAAAAGCTG-----CAGCTGGCTGGCCACGGTCAGTCTT-GGGGAACTCCGGCTGCGTTACTGACCTGCGAGCTGACCGGCTGGGATCATGGGGTGCTGCCCTGGGGACTGCTTCACCTGCTGCACTCAGGAGCAAAACTGCTGTGAAGAGTGCTGCTGTCAGCCG---------GCCTGCTGCGGCTGTTGCGGCTCCTGCTG------------------------------------------------------------------TGGCTGTGGGGGCTCTGGCTGCGGGGGC---------------AGCTGCTGTGGATCGTCCTGCTGTGGATCT---GGCTGCGGG---G------------------GTGGA---GGCTGCGGAGGCTGCGGAGGTGGCTGCT---GCGGGTCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35920230 576 - 65901067 CCTGGGCTGATGACGTCCGGCTGATGTTTGGCCGTGATGCCACGTCTTT-CCCAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGAATGAGTCGGGC-TCTTTTTATGAGTTGAGGTACT-CAGGGCCGGAAAATAAACAGCCTGTTAATGAGATGTTCTTACAGGAACTGGCATAAATAACAACAAAGAAAATATCCTGTCCCTCGTGCCAACACCCTTGGGTGA-GGGGATATAAAAGCTGTGGTCCA----GCTGGCCACGGTCAGTGTA-GGGGAACCCGGGCCGCGAGACTGACCTGCGACCTGACCAGCCAGGACCATGGGGTGCTGCCCGGGGGACTGCTTCACCTGCTGCGCCCAGGACCAGAACTGCTGTGAAGAGTGCTGCTGCCAGCCC---------Gcctgctgcggctcctgctgcggctgctgcgccgcctgctgcagctcctgctgc---ggctGCGGAGGCTC------CGGG---TGCGGAGGCTCGGGCTGCGGAGGCTCGGGCTGCGGGGGC---------------GGCTGCTGTGGCTCTTCTTGCTGTGGCTCT---ggctgcggg---ggc---------------------------------ggctgcgggggcggctgcT---GTGGCTCT i micMur3.chr16 I 213 I 3 s proCoq1.NW_012135969v1 3006903 579 + 8555354 CCTGGGCTGATGACGTCCGGCCGACGTTTGGCCCTGATGTCACGTCTTT-TCCAAGATGTATTTTTACCCTCTGGACAAACAGCAGTTGGAATGAGTCGGGC-TTTTTTTATGGGTCGAGGTACT-CAGAGCTGGAAAATAAACAGCCGGTTAATGAGATGTTCTTACAGGAACTGGTATAAATAATAACAAAGAAAATATCCTGTCCCTTGTGCCAACACCCTGGGGTGA-GGGGATATAAAAGCTGCGGTCCA----GCCGGCCACGGTCAGTCTG-GGGGAACCCGGGCCGCGACACTGACCTGCGACCTGACCAGCCAGGACCATGGGGTGCTGCCCGGGGGACTGCTTCGCCTGCTGCTCCCAGGATCAAAACTGCTGTGAAGAGTGCTGCTGCCAGCCG---------GCctgctgcggctgctgcgggtcgtgctgcgggtcgtgctgcggCTGCGGAGGCTCGGGCTGCGGAGGCTC------CGGC---TGCGGGGGCTCGGGATGCGGGGGCTCGGGCTGCGGCGGC---------------GGCTGCTGCGGCTCTTCTTGCTGTGGATCG---GGCTGCGGG---AGC---------------------------------GGCTGCGGCGGCAGCTGCT---GTGGATCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22828058 562 + 28711273 CCTGGGCTGGTGACGTGAGGC---TGTTTGGCTGCAATGACAGGTCTTT-TGGGACATGTATTTTTACCCTCTGGACAAACAGCAGGTGGAATGAATTGGGCTTTTTTTTACGAGTTGAGGTACT-CAGAGCTGGAAAATAAACAACCAGTTAATGAGATGTTCTTCCAGGCCCTGGCACAAATAATAACAAAGGAAGCATCCTGTGCCTTGTGACAACACCCTCGGGTGA-GGGGATATAAAAGCT---GTCCG----GCTGGCCATGGTCAGTCTG-GGGGAACTCGGGCCGCGATACTGACCTGCGACCTGACCAGCCAGGACCATGGGGTGCTGCCCAGGGGACTGCTTCAACTGCTGCGGCCAGGATCAGAACTGTTGTGAAGAGTGTTGCTGCCAGCCG---------GCctgctgcggctgctgtgggtcctgctgctcgtcttgctgcggctgcggaggctcgggctgcgggggctc------gggc---tgcggaggctccggctgcgggggctccggctgtgggggc---------------ggctgctgcggctcctcttgctgcggatct---------------------------------------------------ggctgtggctccggctgct---gcggctcc i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22088311 548 - 122082543 --------------------------CCTGGC--TAATGACAGGTCTTT-TCCCAGGTGTATTTTTACCCTCTGGACAAATAGCAGTTGGGACGAGTGGGGCCTTTTTTTATGAGTTGAGGTACT-CACGGCTGGAAAATAAACAGCCAACTAATGAGACGTTCTTATGGAAACCAGCACAAATAATAACAAAGCAAACATCCTGTACCCGGTGCCTACACCCCTGGGTGAGGGGGATATAAAAGCTGCTGTCCA----GCTGGCCACTGTCAGACCTAGGGGAAGCTCGGCCGCGTTCCTGACCTGAGACCTGACCGGCTGGGACCATGGGATGCTGCCCGGGAGACTGCCTCAATTGCTGCTCCCAGGAACAGGACTGCTGTGAGGAGTGTTGCTGCCAGCAGGgctgctgcggctgctgtggctgttgtggctcctgctg------------------------------------------------------------------tggctgcggaggttctagctgcggagga---------------ggctgctgcgggtctggctgcgggggatgcggaggctgcgggtctagctgctgcggatctggctgcggaggaggctgcgggggctgtggaggcggctgctgtggcggctcc i mm10.chr11 C 0 C 0 s canFam3.chr9 21441062 582 + 61074082 CCTTGGCTAATGACGGCTGGCCCATGTTTGGCCGTGATGACAGGTCTTT-TCGAAGATGTATTTTTACCCTCTGGACAAATAGCAGTTGGGCCGAGTGGGGC--TTTTTTATGAGTTGAGGTACT-CAGAGCTGGAAAATAAACAGGCGGCTAATGAGACGTTCTTATGGAAACTGGCATAAATAATAACAAAGGAAACATCCTGTCCCCTGTGCCAACACCCTCTGGTGA-AGGGCTATAAAAGCTGCTGGCC-----TCTGGCCACCGTCAGACGT-GGGGAACTCCGGCCGCGCTCCTGACCTGCCACCTGACC-GCCGGGACCATGGGGTGCTGCCCAGGGGACTGCTTCACCTGCTGCCCTCAAGACCAAGACTGCTGTGAAGTGTGCTGCTGCCAGCCC---------Gcctgctgcggttgctgcggttcctgctg---------------------------cggctgctgcggttcctgctgcggc---tgcGGGGGCTCTGGCTGCGGGGGCTCTGGCTGCGGAGGC------TGCGGAGGTGgctgctgcgggtcctcctgctgcggctct---ggctgcggg------------------ggctgcggctctggctgtgggggctgcgggagcggctgct---gcgggtcc i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 436333 525 - 852752 CCTAGGCTAATGACGACCGGCTGATGTTTGTCC-TGATGACAGGCCTTT-TGCAAGATGTGTTTTTACCCTCTGGACAAGTAGCAGTTGGGA-GAGTGGGGC--TTTTTTATGAGTTGAGGTACTCCCAAACTAGAAAATAAACAGCCAGTTAATAAGACACTCATATGGAAACGGGCATAAATAATAACAAAGAAAACATCCTTTCT----TGCCAACACCCTAAGGGGA-GGGGGTATAAAAGCTGCCGCCCA----GCTGGCCACCCGCAGACTT-GGGGCACTCTGGCTGCCACACTGACC------------GCCGGGGACCATGGGGTGCTGCCCAGGGGACTGCTTCGCCTGCTGCCCTCAGGAGCAAGACTGCTGTGAAGTGTGCTGCTGCCAGCCC---------Gcgtgctgcggctgctgcggctcgtgctg------------------------------------------------cggctcgtgctgcggttctggctgcggcggctctggctgcggcggc---------------ggctgctgcggatc---ttgctgtgggtct---gactgcggg------------------ggctgcggg---------ggaggctgcgggggcggctgct---gtggc--- i dasNov3.JH570468 C 0 C 0 a score=227379.000000 s hg38.chr17_GL383564v2_alt 124844 18 + 133151 AGT---------------TGCTGTGGGTCCAGT s panTro5.chr17 16313951 18 + 83181570 AGT---------------TGCTGTGGGTCCAGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218818 18 + 83442489 AGT---------------TGCTGTGGGTCCAGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053980 18 + 4267968 AGT---------------TGCTGTGGGTCCAGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2034228 18 - 2193130 AGT---------------TGCTGTGGGTCCAGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30107759 18 - 77216781 AGT---------------TGCTGTGGGTCCAGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28019410 18 - 80997621 AGT---------------TGCTGTGGGTCCAGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2077123 18 + 10377808 AGT---------------TGCTGTGGGTCCAGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1962036 18 - 8458610 AGT---------------TGCTGTGGGTCCAGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64907248 18 + 75148670 AGT---------------TGCTGTGGGTCCAGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2147062 18 + 4244037 AGT---------------TGCTGTGGGTCCAGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169787 18 + 4569836 AGT---------------TGCTGTGGGTCCAGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125978 18 - 159171411 AGT---------------TGCTGTGGGTCCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835916 18 + 3513951 GGT---------------TGTTGTGGGTCCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1884594 18 + 1920343 AGT---------------TGCTGTGGGTCCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7000990 33 - 7032639 AGTTGCTGTGGGTCCAGCTGCTGTGGGTCCAGC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3007482 18 + 8555354 GGG---------------TGCTGTGGCTCTGGG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22828620 18 + 28711273 ggg---------------tgctgcggctCTGGG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22088859 10 - 122082543 gga---------------tgctgcg-------- i mm10.chr11 C 0 C 0 s canFam3.chr9 21441644 14 + 61074082 agc---------------tgctgcggctC---- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 436858 18 - 852752 ggc---------------tgctgcggctccagc i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35920806 3 - 65901067 I a score=8147371.000000 s hg38.chr17_GL383564v2_alt 124862 561 + 133151 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTATATGCGACACAAAATGAAGACCTTTCCCTCCACCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTCCAGAACCTTCCATACCCCCAAGACAGTGTCTTGTCTTT-C-TGTGATTTGT-AGAGGAGGGCTTGTTCT-CCAACACCTTCTCTGGTATTTCAAGGCACCGAGAAC--AAGAGCCATACTCTGATGAAACATTAAAA-CTCGGTCACA-ACTAAGTGATCCC---AAGCTC-A-AGGGTGAATCCCCAATACTTTACTTATTCACATGAAGTT-CAATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTCCGCCCTGGCTTTCTGCAGC-TTTGAGATGC-AAAAA-AGGTCCATCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA s panTro5.chr17 16313969 561 + 83181570 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTATATGCGACACAAAATGAAGACCTTTCCCTCCACCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTCCAGAACCTTCCATACCCCCAAGACAGTGTCTTGTCTTT-C-TGTGATTTGT-AGAGGAGGGCTTGTTCT-CCAACACCTTCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCATACTCTGATGAAACATTAAAA-CTCGGTCACA-ACTAAGTGATACC---AAGCTC-A-AGGGTGAATCCCCAATACTTTACTTATTCACATGAAGTT-CAATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTCCGCCCTGGCTTTCTGCTGC-TTTGAGATGC-AAAAA-ACGTCCATCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGTCATCTGCCTTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16218836 561 + 83442489 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTATATGCGACACAAAATGAAGACCTTTCCCTCCACCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTCCAGAACCTTCCATACCCCCAAGACAGTGTCTTGTCTTT-C-TGTGATTTGT-AGAGGAGGGCTTGTTCT-CCAACACCTTCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCATACTCTGATGAAACATTAAAA-CTCGGTCACA-ACTAAGTGATACC---AAGCTC-A-AGGGTGAATCCCCAATACTTTACTTATTCACATGAAGTT-CAATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTCCGCCCTGGCTTTCTGCTGC-TTTGAGATGC-AAAAA-ACGTCCATCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGTCATCTGCCTTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4053998 556 + 4267968 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTATATGCGACACAAAATGAAGACCTTTCCCTCCACCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTCCAGAACCTTCCATACCCCCAAGACAGTGTCTTG----T-C-TGTGATTTGT-AGAGGA-GGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCATACTCTGATGAAACATTAAAA-CTCGGTCACA-ACAAAGTGATCCT---AAGCTC-A-AGGGTGAATCCCCAATACTTTACTTATTCACATGAAGTT-CAATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTCCGCCCTGGCTTTCTGCTGC-TTTGAGATGC-AAAAA-AAGTCCATCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2034246 559 - 2193130 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTCTGCTGCCAGCCCACACCTATATGCGACACAAAATGAAGACCTTTCCCTCCACCACTGATGCAGTCCCACTGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTCCAGAACCTTCCATACCTGCAAGACAGTGTCTTGTCTTT-C-TGTGATTTGT-AGAGGAGGGCTTGTTCT-CCAATGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCATACTCTGATGAAACATTGAAA-CTCGGTCACA-ACAAAGTGATCCC---AAGCTC-A-AGGGTGAATCCCCAATACTTTATTTATTCACATGAAGTT-CAATGTCTTAT-A-CTATAAGACATACTCTTCTTCAAGGCGTCTTTGGG--ACTGATCCTCTGCCCTGGCTTTCTGCTGCTTTTGAGATGC-AAAAA-AAGTCCACCTTCTTTGTGAGC--CTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGATCT-CCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30107777 563 - 77216781 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCGCCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAGGGGGGACAGCCCCTCGTGTACAGAACCTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGC-AGAGGAGAGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCGTACTCTGATGCAACATTAAAA-CTGGGTCACA-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATCGATTCACATGAAGTT-CGATGTCTTGT-A-CTATAGGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTTCGCCCTGGCTTTCTGCTGCTTCTGAGATGC-AAAAAAAAGTCTACCTTCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTGATTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28019428 562 - 80997621 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCGCCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTACAGAACCTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGC-AGAGGAGAGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCGTACTCTGATGCAACATTAAAA-CTGGGTCACA-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATCGATTCACGTGAAGTT-CGATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTTCGCCCTGGCTTTCTGCTGCTTCTGAGATGC-AAAAACAAGTCTACCTTCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTGATTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2077141 563 + 10377808 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCGCCACTGATGCAATCCCACCGAAAGCCTCC-----ATCTGCTCCAGTGGGGACAGCCCCTCGTGTACAGAACCTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGC-AGAGGAGAGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCGTACTCTGATGCAACATTAAAA-CTGGGTCACC-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATCGATTCACGTGAAGTT-CGATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTTCGCCCTGGCTTTCTGCTGCTTCTGAGATGC-AAAAACAAGTCTACCTTCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTGATTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1962054 563 - 8458610 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCGCCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTTGTGTACAGAACTTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGC-AGAGGAGAGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCGTACTCTGATGCAACATTAAAA-CTGGGTCACA-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATGGATTCACGTGAAGTT-CGATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTTCGCCCTGGCTTTCTGCTGCTTCTGAGATGCAAAAAAAAAGTCTACCTTCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTGATTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64907266 562 + 75148670 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCGCCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTACAGAACCTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGC-AGAGGAGAGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCGAGGCACTGAGAAC--AAGAGCCGTACTCTGATGCAACATTAAAA-CTGGGTCACA-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATCGATTCACGTGAAGTT-CGATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTATCTTTGGG--ACTGATCCTTCGCCCTGGCTTTCTGCTGCTTCTGAGATGC-AAAAAAAAGTCTACCTTCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTGGTTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCCCTCTGGCATCTGTTTTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2147080 562 + 4244037 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGATCTCTCCCTCCGCCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTCGTGTACAGAACCTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGC-AGAGGAGAGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AAGAGCCGTACTCTGATGCAACATTAAAA-CTGGGTCACA-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATCGATTCACGTGAAGTT-CGATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTTCGCCCTGGCTTTCTGCTGCTTCTGAGATGC-AAAAAAAAGTCTACCTTCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTGATTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTGCCTTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2169805 560 + 4569836 TGCTGCGGCT---CC---GGGTGCTGTGGGCCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTTTCCCTCCGCCACTGATGCAGTCCCACCGAAAGCCTCC-----ATCTGCTCCAG-GGCGACAGCCCCTCGTGTACAGAACCTTCCATGCCCCCAAGACAGTGTCTTGCCTTT-C-TCTGATTTGT-AGAGGAGGGCTTGTTCT-CCAACGCCTGCTCTGGTATTTCAAGGCACTGAGAAC--AGGAGCCATGCTCTGATGAAACATTAAAA-CTGGGTCACA-ACAAAGTGACCCC---AAGCTC-A-AGGGTGAATCCCCAATAC-TTATCGATTCACGTGAAGTT-CAATGTCTTGT-A-CTATAAGACATCCTCTTCTTCAAGGTGTCTTTGGG--ACTGATCCTTCACCCTGGCTTTCTGCTGCTTCTGAGATGC-AAAAA-AAGTCTACCTGCTTTGTGATCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGATCTCCCTGCTGAGGACTGGGTTAGAAAAATTCACTCTGGCATCTG-CTTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46125996 557 - 159171411 TGCTG---------C---GGGTGCTGTGCACCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCACCACTGATGCGGTCCCATCAAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTTGTGTCCAGAACCTTCCATGCCCCCAAGACCATGTCTTGCCTTT-TGTGTGATTTGT-AGAGGAGGGCTTGTTCT-CCAATGCCTGCCCTGGTCTTTCAAGGTACTGAGAAG--AAAAGGCATACTCTGATGAGACGTTAAAA-CTGGGTCACA-ACAAAGTGATCCCT--AAGCTC-A-AGGGTGAATCCCCATGACTTTATTTATTCACATGAAGTT-CACTCTCTTGT-A-CTATAAGGCATCCTCTTCTCCAAGGTGTCTTTGGG--ACCGATCCCCTGCCCTGGCTTTCTGCTGCCTTTGAGATGC--AAAA-GAGCCCACCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTTATTCTGGCATCTGCATTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1835934 557 + 3513951 TGCTG---------C---GGGTGCTGTGCACCTGTGTGCTGCCAGCCCACACCTGTGTGCGACACAAAATGAAGACCTCTCCTTCCACCACCGATGCGGTCCCACCAAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTTCTGTCCAGAACCTTCCATGCCCTCAAGACCGTGTCTTGCCTTT-TGTGTGATTTGT-AGAGGAGGGCTTGCTCT-CCAATGCCTGCCCTGGTCTTTCGAGGCACTGAGAAC--AAAAGCCATACTCTGATGAGACATTAACT-CTGGGTCACA-ACAAAGTGATCCCT--AAGCTC-A-AGGGTGAATCCCCATGACTTTATTTATTCACATGAAGTT-CAGTGTCTTGT-A-CTATAAGGCATCTTCTTCTTCAAGGTGTCTTTGGG--ACCTATCCTCTGCCCTGGCTTTCTGCTGCCTTTGAGATGC--AAAA-AAGCCCACCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTTATTCTGGCATCTGCATTA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1884612 558 + 1920343 TGCTG---------C---GGGTGCTGTGCACCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCCCTCCACCACTGATGCGGTCCCACCAAAAGCCTCC-----ATCTGCTCCAG-GGGGACAGCCCCTTGTGTCCAGAACCTTCCTTGTCCTCAAGACCGTGTCTTGCCTTT-TGTGTGATTTGT-AGAGGAGGGCTTGTTCT-CCAATGCCTGTCCTGGTCTTTCGAGGCACTGAGAAC--AAAAGCCATACTCTGATGAGACTTTAAAA-CTGGGTCACC-ACATAGTGATCCCT--AAGCTC-A-AGGGTGAATCCCCATGACTTTATTTATTCACATGAAGTT-CAGTGTCTTGT-A-CTATAAGGCATCCTCTTCTCCAACGTGTCTTTGGG--ACCGATCCTCTGCCCTGGCTTTCTGCTGCCTTTGAGATGC-AAAAA-AAGCCCACCTTCTTTGTGAGCCTCTTAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTTATTCTGGCATCTGCATTA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7001023 552 - 7032639 TGCTG---------C---GGGTGCTGTGCACCTGTGTGCTGCCAGCCCACACCTGTATGCGACACAAAATGAAGACCTCTCTCTCCACCACTGATGCGGTCCCACCAAAAGCCTCC-----ATCTGCTCCA--GGGGACAGCCCCTTGTGTCCAGAACCTTCCATGCCCCCAAGACCGTGTCTTGCCTTT-TGTGTGATTCGT-AGAGGAGGGCTTGTTCT-TCAATGTCTGCCCTGGTCTTTCAAGGCACTGAGAAC--AAAAGCCGTACTCTGATGAGACATTGAAA-CTGGGTCACA-ACAAAGTGATCCCT--AAGCTC-A-AGAGTGAATCCCCGTGAC----TTTATTCACATGAAGTT-CATTGTCTTGT-A-CTATAAGTCATCCTCTTCTCGAAGGTGTCTTTGGG--ACCGATCCTCTGCCCTGGCTTTCTGCTGCCTTTGAGATGC--AAAA-AAGCCTACCTTCTCTGTGAGCCTCTGAATAAATTTGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCCTTGACCTCCCTGCTGAGGACTGGGTTAGAAAAATTTATTCTGGCATCTGCATTA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35920809 517 - 65901067 TGCTGTGGCT---CT---TCGTGCTGTGGCCCTGTGTGCTGCCAGCCCTCGCCGGTGTGCGACACGAAGTGAAGAC----------------GCAGCGGTCCCACCGAGAGCCTCC-----ATCTGCCCCCG-AGGGAGGGCCCCTCATTTCCGGAACTTTCCACATCTGCAGGACAGTGTCCTGGCTCTGC-TGTTATTTGT-AGAGGAGGGCTTGTTCT-CCAACGCCTGCCCCGGAGTTTCAAGGCGCCGAGAAC--AAGAGCCATGCCCTGGCGAGAAATTAAAA-CTGGGCCCCA-ACGAAGTGCTCTCT--GAGCTCAA-AGGATGAATGTCCAGTGC----CTTGTTGGCAAGAAGTT-AAATGTCTCGT-A-CTATAAGCCACTCTCTTCTTCAAGGTGTCTTTGGG--ACTGACCTCCTG-CCTGGAATTCTACTGCTTTTGAGATGC-CAAAA----CCCACAGTTTTTGTTAGCCTCTTAATAAATTGGAGCATGCTGGCATAACCTAATTAGTTCTCTTGCCTCTTCTTTGACCACA------------------------TTTTCTCTGGCATCCACACTA i micMur3.chr16 I 3 C 0 s proCoq1.NW_012135969v1 3007500 531 + 8555354 TGCTGCGGTT---CC---GGGTGCTGCGGCCCTGTGTGCTGCCAGCCCTCGCCGGTGTGCGACACGAAGTGAGGACCTTTGCC-CCACCACTGACGCAGTCCCACCGAAAGCCTCC-----AGCTGCCCCCG-AGGGAGAGCCCCTCATGTCCAGAACTTTCCACGTCGGCAAGACAGTGTCCTGGCTCTGC-TGTTATTTGT-AGAGAAGGGCTTGTTCT-CCAACGTCTGCCCTGGAGTTTCAAGGCA-CGAGAAC--AAGAGCCATATCCTGGCGAGAAATTAAAA-CTGGGTCTCA-ACAAAGTGCTCCCT--GAGCTCAA-AGGGTGAATCTCTAGTGC----TTTGTTCGCAAGAAGTT-AAATGTCTTGT-A-CTTTAAGCCATTCTCTTCTTCAGGGTGTCTTTGGG--ACCGACCTCCTG-CCTGGATTTCTACTGCTTTTGAGATGC-CCAAA----CCCCCAGTTTTTGTTAGCCTCTCAATAAATTTGAGCATGTTGGCATAAAACAATTAGTTCTCTTGCCTCTTCCTTGACCACA------------------------TTTACTCCGGCATCCGCGCTA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22828638 552 + 28711273 TGCTGTGGTT---CCGGTGGGTGCTGCGGCCCTGTGTGCTGCCAGCCCACGCCTGTGTGCGACACGAAGTGAAGACCTTTGCC-CCACCATTGACGCAATCCCACAGGATGCCTCC-----ATCTGCCCCAG-AGGGAGAGCCCCTCACCTTCAGAACTTTGCACAGCCGCAAGACAGTGTCCCGGCTCTGC-TGTTGTTTGT-AGAGGCGAGTTTGTTCT-CCGACGTCTGCCCTGGAGTGCCAAGGCTTTGAGAAC--CAGAGCCATATCCTGGCCAGAAGTTAAAG-CTGGGGC-----CAAAGTGATTCCC--AAGCTCAA-AGGGAGACTCTCCAGGGC----TTTATTTGCATGAAGTTGGAATGGCTTGT-A-CTATGGCGCATGCTCTTTTTCAAGGTGCCTTTGTG--ACTGACCAC----CCTGGCTTTCTGCTGCTTTTGAGATGC-AAAAA----GCTCTACTCCTTGTTAGCCTCTTAATAAATTCCAGCGTGCTGGCATAACCTCATTAACTCTCTTGCCTCTTCCTTGACCCCC-TCCTGCGGACTGGGTTAGGAAATTTTACCCTGGCACCCACACTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22088869 513 - 122082543 -gtggtggcg---gc---ggGTGCTGTGGTCCAGTGTGCTGTCAGCCCACACCTGTGTGTGAGACAAAATGAAGACCTTCCCCCCTCTAACTGAGACAGTGTTGGGGACAGCCTCCGTCCAGTCCACTCCAG-ATGGAGACCTCCTCATCTCCTGACTCGTTTGCACCTCCAAGACAGCGACATGCCTCT-CCTGTTATTTCTGATAGGAGAGCTTG---------------CCCTGGGGTCT-AAGGCACTCAGGGCCAAAGAGCCATTTCCTGGCAAGAAATTAAAAGCTGGGTTCCA-ATGAGGTGGTCACC--AAGTTC---------AATGTTCCTGAC----TTCATTTACATGAAGTT-ACACGCCTCGC-AGCTATGAGGCATTCTCTTAC--------TCTTTGGA--CCTCTTGGTCCATCCCAGTTTTCTGCTCCTT----------TGAAA------------CTTTGTCAATCTTTTAATAAATTCAAGCATGCTGGC--TACCCTATCCGTCCTCTTGCCTCTTTCTTTAAC--CCTCCTAGAGATT--ACTAGAAAGATTTACTTTAGCATCCAACTAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21441658 546 + 61074082 --------GT---CT---GGGTGCTGCGGGCCCGTCTGCTGCCAGCCTACGCCTGTTTGCGAGACCAAGTGAAGCCCTCTGCCCCCTCCGCGGAGGTGGCCCAAGC-AAAGCCTCC-----ACTTGCTGCAG-GTGGAGA-CCCCTTGTCTCCAGGACATCCTTGGCTCCCAAGACAGCGTCCTGCCTCC-G-TGTTATTTGT-AGACGAGGGCTTGTTCTCCCAACGCCTGCCCTGGTATTTTAAGGCCCTGAGAAC--AAGAGCCATATGCTGGTGAGAAATGGAAG-CTGGGTCCCATCCAAAGTGATCCCC-GAAGCTC-ACAGGGAGAATCCCCATGGC----TTTATTTTCATGGACTT-AAATGTCTTGTCA-CTATAAGACATCATCTTACTCAAGGTGGCTTTGGG--ACTGACCCTCCTCCTCAGCTTTCTGCTGCTTTCGAG-TGC-AAAAT-------TTTCTCTTTGTTAACTTCTTAATAAATTCGAGCTTGCTGGCATAACTGAATTAGTTCTCCCGCCTCTTCCTTGG-CTCCCTCTTGGGCACTGGGCCAGGAAAATTTACTCTGGCATCTGCAGTA i canFam3.chr9 C 0 I 184 s dasNov3.JH570468 436876 539 - 852752 tgctgcggctCCACC---GGGTGCTGCGGCCCTGTCTGCTGCCAACCCACGCCTGTCTGCGAGACGAAGTGAAGACGCTGGTGACGGCCACTGAAGCCGTCCCAGGGAAAGACT-------ATCTGCTCCCG-GCGGAGCCCCCCT-------------------GTCTCCAGGACAGTGACCTGCCTCC-CGTGCAATTTGT-AGAGGAGGGCTAGTTCT-CCAGTGCCTGACCGCGGGTTTTAAGGCACGGAGAAC--AAGAGTCATG--CTGGGGAGAAATTAAAT-CCGGGGCCCACCCGAGGTGATTCCAAGAAGCTCAA-AGGGTAAATCCCCATAGC----TTCGTTTTCATGAATTT-GAGAGTCTTGTCA-CTATAAGGCATTCTTTTATTCAAGATGTCTTTGCGACACTCACCCTTCTCCCCAGCTTTCTGCTGCTTTTGAGATGT-AAAAA-------GTCTCCTTTGTTAGCCTCTTAATAAATTTGAGCATGCTGGCATAACTGAGCAAGTTCTTTGCCTTTTTCCTTCACCTTCAT-CTGTAGACTGGGTCAGGAATATTTACATTGGCATCAAACTA- i dasNov3.JH570468 C 0 C 0 a score=5966858.000000 s hg38.chr17_GL383564v2_alt 125423 411 + 133151 Gggtttttgaattgtggtttttg--gatcacctgcgtcgga---atcacctgggagcttgttaaaactggagactctgaggccctccctaagacatacagaatcagaatccaccaaagtgtggcctggga--------atctgtgtttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccaTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgagattcacttgaaaagc---ttttaaaaatatagatcattgggttttatcactggagattttacccgttagctctagggcctagagtccctagggacctgcatttttaaa----agctcctgggtgaat-gctgatgctgGCCAC-ATTTAATGGTGATTG--AGGGGCATGGCTTTCTTCTGCACTACAGCTCTCCTAGGATGGTT s panTro5.chr17 16314530 411 + 83181570 Gggtttttgaattgtggtttttg--gatcacctgcgtcgga---atcacctgagagcttgttaaaactggagactctgaggccctccctaagacatacagaatcagaatccaccaaagtgtggcctggga--------atctatgtttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccacAGA--------------TCTAGACGGAAGCTTCTGTGTGCtgcatgagattcacttgaaaagc---ttttaaaaatatagatcattgggttttatcactggagattttacccgttagctctagggcctagagtccctagggacctgcatttttaaa----agctcctgggtgaat-gctgatgctgGCCAC-ATTTAATGGTGATTG--AGGGGCATGGCTTTCTTCTGCACTACAGCTCTCCTAGGATGGTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16219397 411 + 83442489 Gggtttttgaattgtggtttttg--gatcacctgcgtcgga---atcacctgagagcttgttaaaactggagactctgaggccctccctaagacatacagaatcagaatccaccaaagtgtggcctggga--------atctgtgtttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccacAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgagattcacttgaaaagc---ttttaaaaatatagatcattgggttttatcactggagattttacccattagctctagggcctagagtccctagggacctgcatttttaaa----agctcctgggtgaat-gctgatgctgGCCAC-ATTTAATGGTGATTG--AGGGGCATGGCTTTCTTCTGCACTACAGCTCTCCTAGGATGGTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4054554 411 + 4267968 Gggtttttgaattgtggtttttg--gatcacctgcgccgga---atcacctgggagcctgttaaaactggagattctgaggccctccctaagacatacagaatcagaatccaccaaagtgtggcctggga--------atctgtgtttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccaTAGA--------------TCTAGACAAAAGCTTCTGTGTGCtgcatgagagtcacttgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccgttagctctagggcctagagtccctagggactcgcatttttaaa----agctcctgggtgaat-gctgatgctgGCCAC-ATTTAATGGTGATTG--AGGGGCATGGCTTTCTTCTGCACTACAGCTCTCCTAGGATGGCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2034805 410 - 2193130 Gggtttttgaaatgtggtttgtg--gatcacctgcatcaga---atcacctgggagcttgttaaaactggagattctgaggccttccctaagacatacagaatcagaatccaccaaagtgtggcctggga--------atctgtgtttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccaTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgagagtcacttgaaaagc---ttttaaaaatatagatcctt-ggttttatcactggagattttacccattagctctagggcctagagtccctagggacctgcatttttaaa----agctcctgggtgaat-gctgatgctgGCCAC-ATTTAATGGCGATTG--AGGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30108340 411 - 77216781 Gggtttttgaaatgtggtttttg--gatcacctgcatcgga---attacctgggagcttgttaaaactggagattctgaggccctccctaagacatacagaatcggaatccacccaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccGTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgcgattcacctgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagttccccgggacctgcgtttttaaa----acctcctgggcaaat-gctgatgctgGCCAC-ATGTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28019990 411 - 80997621 Gggtttttgaaatgtggtttttg--gatcacctgcatcgga---attacctgggagcttgttaaaactggagattctgaggccctccctaagacatacagaatcggaatccacccaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccGTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgcgattcacctgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagttccccgggacctgcgtttttaaa----acctcctgggcaaat-gctgatgctgGCCAC-ATGTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2077704 411 + 10377808 Gggtttttgaaatgtggtttttg--gatcacctgcatcgga---attacctgggagcttgttaaaactggagattctgaggccctccctaagacatacagaatcggaatccacccaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcattgaagtttgagaaccGTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgcgattcacctgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagttccccgggacctgcgtttttaaa----acctcctgggcaaat-gctgatgctgGCCAC-ATGTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1962617 411 - 8458610 Gggtttttgaaatgtggtttttg--gatcacctgcatcgga---attacctgggagcttgttaaaactggagattctgaggccctccctaagacatacagaatcggaatccacccaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccGTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgagattcacctgaaaagc---ttttaaaaatatagatccttgggttttatcactgcagattttacccattagctctagggcctagagttccccgggacctgcgtttttaaa----acctcctgggcaaat-gctgatgctgGCCAC-ATGTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64907828 411 + 75148670 Gggtttttgaaatgtgggttttg--gatcacctgcatcgga---attacctgggagcttgttaaaactggagattctgaggccctccctaagacatacagaatcggaatccacccaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccaTGGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgagattcacttgagaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagtccccccggacctgtgtttttaaa----acctcctgggcaaat-gctgatgctgGCCAC-ATGTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2147642 411 + 4244037 Gggtttttgaaatgtggtttttg--gatcacctgcatcgga---attacctgggaacttgttaaaactggagattctgaggccctccctaagacatacagaatcagaatccacccaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccGTAGA--------------TCTAGACGGAAGCTTCCGTGTGCtgcatgagattcacctgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagttccccgggacctgcgtttttaaa----acctcctgggcaaat-gctgatgctgGCCAC-ATGTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2170365 411 + 4569836 Gggtttttgaaatgtggcttttg--gatcacctgcgtcgga---attacctgggagcttgttaaaactggagattctgaggccctccctaagacatacagaatcagaatccaccaaaccgtggcctggga--------atctgtatttttaacaagaaccttag-ataattcttatgcactgaagtttgagaaccGTAGA--------------TCTAGATGGAAGCTTCCGTGTGCtgcatgagattcacttgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagcccccccggtcttgtgtttttaaa----agctcctaggcaaat-gctgatgctgGCCAC-ATTTAATGGTGATTG--AAGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46126553 408 - 159171411 Gggtttttgaaatgtgatttttg--gatcacctgcattgga---atcacctgggggcttgttaaaactggagattccgaggccctccctaagacatacagaatcagaatccaccagagtgtggcctggga--------atctgtgtttttaacaagaacctcag-ataattcttat--actgaagtttgagaatcaTAGA--------------TCTACACGGAAGCTTCCATGTGCTacatgagattcacttgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagtgccct-ggacctgcattttgaaa----agctcctgggtgaGC-ACTGATGCTGGCCAA-ATTTAATGGTAACTG--AGGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1836491 408 + 3513951 Ggatttttgaaatgtgatttgtg--gatcacctgcattgga---atcacctgggggcttgttcaaactggagattctgaggccctccctgagacatacagaatcagaatctaccagagcgtggcctggaa--------atctgtgtttttaacaagaacctcag-ataattcttat--actgaagtttgagaaccaTAGA--------------TCTACATGGAAGCTTCCATGTGCtacatgagattcacttgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctccagggcccagagtcccct-ggacctgcattttgaaa----agcttctgggtgagc-gctgatgctgGCCAA-ATTTAATGGTAATTG--AGGGGCATGGCTTTCTTCTGCACTACAGTTCTCCTAGGATGGTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1885170 407 + 1920343 Gggtttttgaaatgtgatttgtg--gatcacctgcattgga---atcacctgggcgcttgttaaaactggagattctgaggccctccctaagacatacggaatcagaatccaccagagcgtggcctggga--------agctgtgtttttaacaagaacctcag-ataattcttat--actgaagtttgagaaccacAGA--------------TCTACACTGAAGCTTCCATGTGCTacatgagattcacttgaaaagc----tttaaaaatatagatccttgggttttatcactggagattttactcattagctctagggcctagagtgccct-ggacctgcattttgaaa----agctcctgggtgagt-gctgatgttggccaa-atttaaTGGTAATTG--AGGGGCATGGCTTTCTTCTGCATTACGGCTCTCCTAGGATGGTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7001575 408 - 7032639 Gggtttttgaaatgtgatttgtg--gatcacctgcattgga---atcacctgggggcttgttaaaactggagattctgaggccctccctaagacatatggaatcagaatccaccagagcgtggcctggaa--------atctgtgtttttaacaagaacctcag-ataattcttat--actgaagtttaagaaccaTAGA--------------TCTACACGGAAGCTTCCATGTGCTacatgagattcacttgaaaagc---ttttaaaaatatagatccttgggttttatcactggagattttacccattagctctagggcctagagtgccct-ggacctgcattttgaaa----agctcctgggtgaGC-ACTGATGCTGGCCAA-ATTTAATGGTAATTG--AGGGGCGTGGCTTTCTTCTGCACTACGGTTCTCCTAGGATGGTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35921326 412 - 65901067 Gggttttttaaatgtggtttgtg--gattgcctgcaagggactcatagcccaggggctagttaaaactggagattct-gggccccccctcagacacacagaatccgaatccacaggggcatggcct-gaa--------atctgtgtttttagcaagaacgtcagaataattcttatgcactgaagtttgagaaacaTACA--------------TGTAGACTGAAGCTCCCATCTTctgcatgagattaactcgggaggc---ttttaaaactacagacccctgggcttcaca-ttagagatttgatccattagctccagggcctagggtgccctgggacctgcattttttta----agctccTGTGTGGGGGGCTGAAGCTGGCCAA-ATTTGATCCTGATC---GGGGGCATGGCTTCCTTCTGTGCCATGGTTCTCCTAGCCTGACT i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3008031 410 + 8555354 Gggttttttaaatgtggtttgtg--gatcgcctgcaggggaatcatcgcccaggggctagttaaaactggagattctagggctctccct--gagacacagaatcagaatccacaggggtgtggcct-gaa--------atctgtgtttttaacaagaacttcag-ataattcttacgcactgaagtttgagaaacacGCA--------------TGTAGACTGAAGCTCCCATCTTCtgcatgagattcactcgggaggc---ttttaaaactacagattctcgggcttcacatttagagatttgatccattagctccagggcctagggtgccctgggacctgtatttttata----agctcctgggtgagtggctgatgctgGCCAA-ATTTAATCCTGAT----GGGGGCATGGCTTCCTTCTGTGCCACAGTTCTCCTTGCCTGACT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22829190 398 + 28711273 GGGTTTTAACaatgtggtttgtg--catcacctgcaaagga---attgcccaggggcttgtcaaaagtggagatgccagggccctccctgagacatgcagaatcacaatccacaggg-------cc-gaa--------atccatgctttaaataccaacctcag-ataagtcataggcagtgacgtttgagaaacaG--A--------------TGTAGACCGAAGCTCCCATCTTCtgcataagattcacttgggaggc---ttctaagaacacggatctttaggcttcTCTGTTACAGATTTGCGCCGTTAGCTCTAGGACCCGTGGTGCACTGGGACCTGAGTTTTTGTA----ACCTCGTG-GTGAAT-GCTGACAACAGCCAC-ATTTCATCCTGATCCCTGGGACCCTGGCTTCCTTCTGCACCATG----TTCTAGAATGACT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22089382 390 - 122082543 GGAC------AGCATAGTATTTGCTGATCTCCTGCAGCAGA---GTCCC------------------GGAAGGTTCC--AGCCCCCACTGAAACATAAAGGGT-----GCTGTAGGGACGTGGCCTGGGGGGGTGTGTGTCTGTGTTTTTAATACGAAC-TTAG-GTAATTCTC-TACATGGAGGGTTGGAGGTTGTACAGATTGTAGACAGACTGTAGACAGAAGCTGCTGAGTGCAGTGTGAGAGTCGCTTAGGGAGG---CTTTGACAATA------CCTGGGTGCCACCACTGGCTGTGGTATCCATCAGTTCTAGGACCTGGGGTGCCTGAGGGTC-ATATTTCTGAA----AGCTTCAAGGTAG---GCTGACTCTAGGTGT-GTCTCATCATGCTCA--GGGTGAATGCCTACTTTCTGTACT---GTGCTTCTAGGATGCTT i mm10.chr11 C 0 I 244 s canFam3.chr9 21442388 377 + 61074082 Ggatttttaaaatgtggtttgtg--gaccacttgcatcaga---atcacctgggagctagttaaaa-tggaaattctggagcccttcccgagaaaggcagaatcagaatccacaggggtgtggcctggca--------atctgtgttttaaacaagaaacccag-----------------------------------a--------------tgtagactaaagcttccatgtactgcatgagattcacttggggagg---tttcaaaaatacagattcttaggcgtcactatcagagattctatccattagctccagggt---ggcagccctgggatctgcatttAAAAAATGCAGTAAATGGGCAAAT-GCTGAGGCTGGCCAAGGTTTAATCTTGAGCA--AGGGGCATGCCTTCCTTCAGCATTATAGCTCTCC-AGAATGGTT i canFam3.chr9 I 184 C 0 s dasNov3.JH570468 437415 398 - 852752 Gggtttttgaaatgtggtttgtg--aatcacctgcatcagg---atcacctggggccgaattaaaactggagatttaggggctttccctgagacttctgggatcagaatctacaggagaatggcctggga--------acctgtgtttttaacaaaaaccctca-----------tatactaaagtttgagctccacAG---------------TGTAGACTAAAGCTGCTATATGAtgcacgagattcccgtgggaggtttttttttaaaattcaaattcttggacttca-ggctagagacttcatcgattagttctagaat---ggggtccctgacctctgcatgtgta-a----agatcctgggtaaat-gctgacacCAGCCAA-GTTTAATCTTAAGGT--AAGGGCATGGCTTCCTTCTGCATTGTAGTCCCCCTAAGACACTT i dasNov3.JH570468 C 0 C 0 a score=571051.000000 s hg38.chr17_GL383564v2_alt 125834 33 + 133151 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT s panTro5.chr17 16314941 33 + 83181570 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16219808 33 + 83442489 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4054965 33 + 4267968 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035215 33 - 2193130 C-TGCAGGAGGGCTTCAGGCTTGATCAGAATTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30108751 33 - 77216781 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020401 33 - 80997621 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078115 33 + 10377808 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963028 33 - 8458610 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908239 33 + 75148670 C-TGCAGGAGGGCTTCAGGCTTGATCGGAACTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148053 33 + 4244037 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2170776 33 + 4569836 C-TGCAGGAGGGCTTCAGGCTTGATCAGAACTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46126961 34 - 159171411 CTTGCTGGAGGGCTTCAGGCTTGATCAGACCTTT i calJac3.chr5 C 0 I 11 s saiBol1.JH378271 1836899 33 + 3513951 C-TGCAGGAGGGCTTCAGGTTTGATCAGAAATTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1885577 33 + 1920343 C-TGCAGGAGGGCATCAGGCTTGATCAGAACTTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7001983 33 - 7032639 C-TGCAGGAGGGCTTCAGGCTTTATCAGAACTTT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35921738 33 - 65901067 C-TGCAGGAGGGCATCGGGCTTGGTCGGAACCTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3008441 33 + 8555354 C-TGCAGGAGGGCATCGGGCTGGGTCAGAACTTC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22829588 33 + 28711273 T-TGCAGGAGGGCATCAGGCTTGGTCAGAACTTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21442765 33 + 61074082 C-TGCAGAAGGGCTTCAGGTTTGGTCAGAACTTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 437813 33 - 852752 T-TGCAGGAGGGCTTGAGGCTTGGTCAGAACTTT i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22089772 244 - 122082543 I a score=285963.000000 s hg38.chr17_GL383564v2_alt 125867 27 + 133151 CTGGCAAAGTC-GGAAAGGAGGCTTTG-G s panTro5.chr17 16314974 27 + 83181570 CTGGCAAAGTC-GGAGAGGAGGCTTTG-G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16219841 27 + 83442489 CTGGCAAAGTC-GGAGAGGAGGCTTTG-G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4054998 27 + 4267968 CTGGCAAAGTC-AGAGAGGAGGCTTTG-G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035248 27 - 2193130 CTGGCAAAGTC-GGAGAGGAGGCTTTG-G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30108784 27 - 77216781 CTGGCAAAGTC-GGAGAGGAGGCGTTG-G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020434 27 - 80997621 CTGGCAAAGTC-GGAGAGGAGGCGTTG-G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078148 27 + 10377808 CTGGCAAAGTC-GGAGAGGAGGCGTTG-G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963061 27 - 8458610 CTGGCGAAGTC-GGAGAGGAGGCGTTG-G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908272 27 + 75148670 CTGGCAAAGTG-GGAGAGGAGGCGTTG-G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148086 27 + 4244037 CTGGCAAAGTC-GGAGAGGAGGCGTTG-G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2170809 27 + 4569836 CTGGCAAAGTT-GGTGAGGAGGCGTTG-G i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1836932 27 + 3513951 TTGGCAAAGTT-GGAGAGGAGGCTTTA-C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1885610 27 + 1920343 TTGGCAAAGTT-GGAGAGGAGGCTTTA-C i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002016 27 - 7032639 CTGGCAAAGTT-GGAGAGGAGGCTTTA-C i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35921771 27 - 65901067 CTGGCACAGGTAGGGGAGGAGGCTCTA-- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3008474 27 + 8555354 CTGGCACAGACAGGGGAGGAGACTCTG-- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22829621 27 + 28711273 CAGGCACAGTCAGGGCA-AAGACTCTGG- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21442798 26 + 61074082 CTGGCAAAGTT-GG-GAAGAGGCTTTG-G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 437846 28 - 852752 CTGGCAAAGCCAGGGTAGGAGACTTTG-T i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22089772 244 - 122082543 I e calJac3.chr5 46126995 11 - 159171411 I a score=107985.000000 s hg38.chr17_GL383564v2_alt 125894 7 + 133151 TAAAACA s panTro5.chr17 16315001 7 + 83181570 TAAAACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16219868 7 + 83442489 TAAAACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055025 7 + 4267968 TAAAACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035275 7 - 2193130 TAAAACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30108811 7 - 77216781 TAAAACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020461 7 - 80997621 TAAAACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078175 7 + 10377808 TAAAACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963088 7 - 8458610 TAAAACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908299 7 + 75148670 TAAAACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148113 7 + 4244037 TAAAACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2170836 7 + 4569836 CAAAACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127006 7 - 159171411 TAAAACA i calJac3.chr5 I 11 C 0 s saiBol1.JH378271 1836959 7 + 3513951 TAAAACA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1885637 7 + 1920343 TAAAACA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002043 7 - 7032639 TAAAACA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3008501 7 + 8555354 TAAAACA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22829648 7 + 28711273 TAAACAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21442824 7 + 61074082 TAAAACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 437874 5 - 852752 --AAACA i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22089772 244 - 122082543 I e micMur3.chr16 35921798 0 - 65901067 C a score=240896.000000 s hg38.chr17_GL383564v2_alt 125901 17 + 133151 AGATTGGTTCTG-----AATGG s panTro5.chr17 16315008 17 + 83181570 AGATTGGTTCTG-----AATGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16219875 17 + 83442489 AGATTGGTTCTG-----AATGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055032 17 + 4267968 AGATTGGTTCTG-----AATGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035282 17 - 2193130 AGATTGGTTCTG-----AATGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30108818 17 - 77216781 AGATTGGTTCTG-----AATGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020468 17 - 80997621 AGATTGGTTCTG-----AATGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078182 17 + 10377808 AGATTGGTTCTG-----AATGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963095 17 - 8458610 AGATTGGTTCTG-----AATGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908306 17 + 75148670 AGATTGGTTCTG-----AATGG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148120 17 + 4244037 AGATTGGTTCTG-----AATGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2170843 17 + 4569836 AGATTGGTTCTG-----AATGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127013 17 - 159171411 AGATTGGTTCTG-----AATGG i calJac3.chr5 C 0 I 328 s saiBol1.JH378271 1836966 17 + 3513951 AGATTGGTTCCG-----AATGG i saiBol1.JH378271 C 0 I 340 s cebCap1.NW_016107730v1 1885644 17 + 1920343 AGATTGGTTCTG-----AATGG i cebCap1.NW_016107730v1 C 0 I 331 s aotNan1.NW_018502359v1 7002050 17 - 7032639 AGATTGGTTCTG-----AATGG i aotNan1.NW_018502359v1 C 0 I 326 s micMur3.chr16 35921798 9 - 65901067 ---TTGATTCTG---------- i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3008508 12 + 8555354 AGCTTGATTCTG---------- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22829655 17 + 28711273 AGCTTCATTCTGGAAAG----- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22090016 17 - 122082543 AGGTTGGTTGTG-----AATGG i mm10.chr11 I 244 C 0 s canFam3.chr9 21442831 17 + 61074082 AGCTTGCTTTGG-----AATGG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 437879 17 - 852752 AAGTTGGTTCTG-----ACTGG i dasNov3.JH570468 C 0 C 0 a score=2438130.000000 s hg38.chr17_GL383564v2_alt 125918 183 + 133151 AAAGGATTTCTAATGGCAAAGC-TAGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGTACAGTTCCTTCTTCCAGCCTCATGCTT-GGTCCAGTCT---CACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTACGTTTCTTCTGCCTGAGT--TCTAAGGAG-GAG-GGAG-TGAGTATACCTCTG s panTro5.chr17 16315025 183 + 83181570 AAAGGATTTCTAATGGCAAAGC-TAGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGTACAGTTCCTTCTTCCAGCCTCATGCTT-GGTCCAGTCT---CACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTATGTTTCTTCTGCCTGAGT--TCTAAGGAG-GAG-GGAG-TGAGTATACTTCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16219892 183 + 83442489 AAAGGATTTCTAATGGCAAAGC-TAGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGTACAGTTCCTTCTTCCAGCCTCATGCTT-GGTCCAGTCT---CACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTACGTTTCTTCTGCCTGAGT--TCTAAGGAG-GAG-GGAG-TGAGTATACTTCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055049 183 + 4267968 AAAGGATTTCTAATGGCAAAGC-TAGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGTACAGTTCCTTCTTCCAGCCTCATGGTT-GGTCCAGTCT---CACTTTTCTGTGCTAG---------------GTTGTCTTG-----------------------CCT--------GGAACCAGCTACGTTTCTTCTGCCTGAGT--TCTAAGGAG-GAG-GGAG-TGAGTATACCTATG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035299 183 - 2193130 AAAGGATTTCTAATGGCAAAGC-TAGTGAATTCACAGTTTCTGAGGATGTTCTGTGCAGCACAGTTCCTTCTTTCAGCCTCATGGTT-GGCCCAGTCT---CACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTACATTTCTTCTGCCTGAGT--CCTAAGGAG-GAG-AGAG-TGAGTATACCTCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30108835 183 - 77216781 AAAGGATTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGCACAGTCTCTTCTTCCAGCCTCATGCTC-GGCCCAGTCT---CATTTTTCCGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTATGTGTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTACACCTCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020485 183 - 80997621 AAAGGATTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGCACAGTCTCTTCTTCCAGCCTCACGCTC-GGCCCAGTCT---CATTTTTCCGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTATGTGTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTACACCTCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078199 183 + 10377808 AAAGGATTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGCACAGTCTCTTCTTCCAGCCTCATGCTC-GGCCCAGTCT---CATTTTTCCGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTATGTGTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTACACCTCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963112 183 - 8458610 AAAGGATTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGCACAGTCTCTTCTTCCAGCCTCATGCTC-GGCCCAGTCT---CACTTTTCCGTGCTAG---------------GTTGTCTTA-----------------------TCT--------GGAACCAGCTATGTGTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTATACCTCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908323 183 + 75148670 AAAGGAGTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGCACAGTCTCTTCTTCCAGCCTCATGCTC-GGCCGGGTCT---CACTTTTCCGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTACGTTTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTACATCTCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148137 183 + 4244037 AAAGGATTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGCGCAGCACAGTCTCTTCTTCCAGCCTCATGCTC-GGCCCAGTCT---CACTTTTCCGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACCAGCTATGTGTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTACACCTCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2170860 183 + 4569836 AAAGGATTTCTAATGGCAAAGC-TTGTGAATTCACAGTTTCTGAGGATGTTCTGTGCAGTACAGTTTCTTCTTCCAGCCTCATGCTT-GGCCCAGTCT---CACTTTTCCGTGCTAG---------------GTTTTCTTA-----------------------CCT--------GGAACCAGCTACGTTTCTTCTGCCTGAGT--CCTAGGGAG-CAG-GGAG-TGAGTACACCTCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127358 185 - 159171411 AAAGGATTTCTAATGGCAAAGC-TTGTGAACTCACAGTTTCTGAGGATGTTCTGTGCAGCACGGTTCCTTCTTCCAGCCTCACAGCT-GGCCCAGTCTTACTACTTTTCTGTGCTGG---------------ATTGTCTTA-----------------------CCT--------GGACCT-GCTACGTTTCTTCTGCCTGAGT--CCTAGCGAG-GAA-GGAG-TGAGTATACCTCTG i calJac3.chr5 I 328 C 0 s saiBol1.JH378271 1837323 182 + 3513951 AAAGGATTTCTAGTGGCAAAGC-TTGTGAACTCACAGTTTCGGAGGATGTTCTGCTCAGCACGGTTCCTTCTTCCAGCCTCACGGTT-GGCCCGGTCT---TACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACT-GCTACATTTCTTCTGCCTGAGT--CCTAGGGAG-GAA-GGAG-TGAGTATACCTCTG i saiBol1.JH378271 I 340 C 0 s cebCap1.NW_016107730v1 1885992 181 + 1920343 AAAGGATTTCTAGTGGCAAAGC--TGTGAACTCGCAGTTTCTGAGGATGTTCTGTGCAGCACTATTCCTTCTTCCAGCCTCACGGTT-GGCCCAGTCT---TACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAGCT-GCTACATTTCTTCTGCCTTCGT--CCTAGGGAG-GAA-GGAG-TGAGTATACTTCTG i cebCap1.NW_016107730v1 I 331 C 0 s aotNan1.NW_018502359v1 7002393 182 - 7032639 AAAGAATTTCTAATGGCAAAGC-TTGTGAACTCACAGTTTCTGAGGATGTTCTGCGCAGCACGGTTCCTTCTTCCAGCCTCACGGTT-GGCCCAGGCT---TACTTTTCTGTGCTAG---------------GTTGTCTTA-----------------------CCT--------GGAACT-GCTGCATTTCTTCTGCCTGAGT--CCTAGGGAG-GAA-GGAG-TGAGTATACTTCTG i aotNan1.NW_018502359v1 I 326 C 0 s micMur3.chr16 35921807 169 - 65901067 ----GGATTCCTGTGGCAAAGC-TTGTGAA--CGCAGTTTCTAAGAATGTTCTGGGCAG---------TTCCTTCAGTCCCAAGCTT-TGCCCAGTCT---CATTTTTCTGTGTTAG---------------GTTGTCTTG----------------------TCCC--------AGAACCAGATGCATTTCTTCTACCTGAGT--CCCAAGGAG-GAG-GGAG-TGAGTGCACATCTG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3008520 171 + 8555354 ----GAATTCCTATGGCAAAGC-TTGTGAA--CACAGTTTCTGAGGATGTTCTGGGCAG---------TTCCTTCAGCTCCATGCTT-GACCCGGTCT---CATTTTTCTGTGTTAG---------------GTTGTCTTG----------------------TCCC--------GGAACCAGTTGCATTTCTTCTGCCTGCGTCCCCCAAGGAG-GAG-GGAA-CGAGTGCACATCTG i proCoq1.NW_012135969v1 C 0 I 36 s otoGar3.GL873537 22829672 180 + 28711273 AAAAGGATTTCAGTTGTGAAGC-TTATGGT--CACAGTTTCTAGGGATGTTCTGAGCAGTCCTGTTTCTTCCTTCCACCTCAACCTT--GCTCAATCT---CA-TTTTCTGTGTTAG---------------GTTTTCTTG----------------------TCCT--------GGAAATAGCTGCATTTCTTCTGCCTGAGT--CAGGAGGAG-GAG-GGAG-TGAGTGTGCTTCTG i otoGar3.GL873537 C 0 I 596 s mm10.chr11 22090033 203 - 122082543 CGGGGATTTCTGCGGCCAGACC---GTGAATGCTCAGTTTCTGAGGATGTTTGTGTTGGTACAATTCC--CCTCTAGCCTCGTGTT-----CTGGTCT---TGCtattttg-gctagtgttgttttttatttgttgtctttgttttgtttttgtttggttttgtatt--------gGACCTAGCCGCAGTTACTGTAC-----T--CAGAGGAAGAAAA-GGGG-CACGTGTAC----- i mm10.chr11 C 0 C 0 s canFam3.chr9 21442848 184 + 61074082 AAAAGATTCCT-GTGGCAGAACTTTGTGAA--CACAGTGCCTATGAATGTTCTGGGGATTCCAGTTCTTTCTTCTAGCCAAATGCTTTGACAAAGTTT---CCCTCTTCTGGGTTAT---------------GTTTTCTCG----------------------TTCT--------ACAACCAGCTGTATCTCTTCTGCTTGAGT--CCCAGGGAT-GAGAGGGG-TGAATGTCCATCCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 437896 187 - 852752 -AAGGGGTTCCTGCGGCAAAACTTTGTGAACCTCCAGGTCCTAAGGATATGCTAGGCGGTCCGGTTCCTTTGCTTAGGCTCACGTTT-----CAGTGA---GA-TTTTCTGGGATAG---------------GGTTTTGTT-----------------------TCTTTGGTATGGTAACTAATTGCTCTCCTTCTTCCTGAGT--TTCAGGAAT-GAG-AGGGCTGAGGGTATATCTG i dasNov3.JH570468 C 0 C 0 a score=70393.000000 s hg38.chr17_GL383564v2_alt 126101 4 + 133151 CTAG s panTro5.chr17 16315208 4 + 83181570 CTAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220075 4 + 83442489 CTAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055232 4 + 4267968 CTAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035482 4 - 2193130 CTAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109018 4 - 77216781 CTAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020668 4 - 80997621 CTAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078382 4 + 10377808 CTAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963295 4 - 8458610 CTAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908506 4 + 75148670 CTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148320 4 + 4244037 CTAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171043 4 + 4569836 CTAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127543 4 - 159171411 CTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837505 4 + 3513951 TTAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886173 4 + 1920343 CTAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002575 4 - 7032639 CTAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35921976 4 - 65901067 CCAG i micMur3.chr16 C 0 I 31 s otoGar3.GL873537 22830448 4 + 28711273 CTAG i otoGar3.GL873537 I 596 C 0 s mm10.chr11 22090236 2 - 122082543 --AG i mm10.chr11 C 0 C 0 s canFam3.chr9 21443032 4 + 61074082 CTAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 438083 4 - 852752 CTAG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3008691 36 + 8555354 I a score=120930.000000 s hg38.chr17_GL383564v2_alt 126105 10 + 133151 GTAGGGCCCA s panTro5.chr17 16315212 10 + 83181570 GTAGGGCCCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220079 10 + 83442489 GTAGGGCCCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055236 10 + 4267968 GTAGGGCCCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035486 10 - 2193130 GTAGGGCCCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109022 10 - 77216781 GCAGGGCCCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020672 10 - 80997621 GCAGGGCCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078386 10 + 10377808 GCAGGGCCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963299 10 - 8458610 GCAGGGCCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908510 10 + 75148670 GCAGGGCTCG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148324 10 + 4244037 GCAGGGCCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171047 10 + 4569836 GCAGGGCCCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127547 10 - 159171411 GTAGGGCCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837509 10 + 3513951 GTAGGGCCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886177 10 + 1920343 GCAGGGCCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002579 10 - 7032639 GTAGGGCCCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22830452 10 + 28711273 GTGGGGGTTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22090238 1 - 122082543 ---------A i mm10.chr11 C 0 I 1 s canFam3.chr9 21443036 10 + 61074082 GTGGGGCCTA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 438087 10 - 852752 GTGAAGCCTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3008691 36 + 8555354 I e micMur3.chr16 35921980 31 - 65901067 I a score=6172.000000 s hg38.chr17_GL383564v2_alt 126115 1 + 133151 G s panTro5.chr17 16315222 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220089 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055246 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035496 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109032 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020682 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078396 1 + 10377808 G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963309 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908520 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148334 1 + 4244037 G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171057 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127557 1 - 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837519 1 + 3513951 A i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886187 1 + 1920343 A i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002589 1 - 7032639 A i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922011 1 - 65901067 A i micMur3.chr16 I 31 C 0 s otoGar3.GL873537 22830462 1 + 28711273 A i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443046 1 + 61074082 A i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 438097 1 - 852752 A i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090239 1 - 122082543 I e proCoq1.NW_012135969v1 3008691 36 + 8555354 I a score=535490.000000 s hg38.chr17_GL383564v2_alt 126116 36 + 133151 -CCAAG-GTGTGTGGG---TCCACCTGGGAGGTTAAAACTC s panTro5.chr17 16315223 36 + 83181570 -CCAAG-GTGTGTGGG---TCCACCTGGGAGGTTAAAACTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220090 36 + 83442489 -CCAAG-GTGTGTGGG---TCCACCTGGGAGGTTAAAACTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055247 36 + 4267968 -CCAAG-GTGTGTGGG---TCCACCTGGGAGGTTAAAACTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035497 36 - 2193130 -CCGAG-GTGTGTGGG---TCCACCTGGGAGGTTAAAACTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109033 36 - 77216781 -CCGAG-GTGTGTGGG---TCTACCTGGGAGCTTAAAACTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020683 36 - 80997621 -CCGAG-GTGTGTGGG---TCTACCTGGGAGCTTAAAACTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078397 36 + 10377808 -CCGAG-GTGTGTGGG---TCTACCTGGGAGCTTAAAACTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963310 36 - 8458610 -CCGAG-GTGTGTGGG---TCCACCTGGGAGCTTAAAACTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908521 36 + 75148670 -CCGAG-GTGTGTGGG---TCCACCGGGGAGCTTAAAACTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148335 36 + 4244037 -CCGAG-GTGTGTGGG---TCCACCTGGGAGCTTAAAACTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171058 36 + 4569836 -CCGAG-GTGTGTGGG---TCCACCTGGGAGGTTAAAACTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127558 36 - 159171411 -TCAAG-GTGTGTGGG---TCTCTCTGGGAGGTTAAAACTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837520 36 + 3513951 -CCAAG-GTGTGTGGG---TCTCTCTGGGAGGTTAAAACTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886188 36 + 1920343 -CCAAG-GTGTGTGGG---TCTCTCTGGAAGGTTAAAACTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002590 36 - 7032639 -CCAAG-GTGTGTGGG---TCTCTCCGGGAGGTTAAAACTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922012 36 - 65901067 -CCAAA-GTGTGTGGG---CCCACCTGGGAGGTTACAATTC i micMur3.chr16 C 0 I 12 s proCoq1.NW_012135969v1 3008727 36 + 8555354 -CCAAG-GCGTGTGGG---TCCACCTGGGAGGTTAAAATTC i proCoq1.NW_012135969v1 I 36 I 12 s otoGar3.GL873537 22830463 39 + 28711273 -CCAAG-GTGTGTGGGTCATCCCCCTGGGAGTTTAAAATTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22090240 26 - 122082543 ------------CAAG---GCTAGCTGGGAAATGAAGACTC i mm10.chr11 I 1 C 0 s canFam3.chr9 21443048 37 + 61074082 -CCAGGCGTGTTTGAG---TCCTGCTGGAAGGTTAAAATTC i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 438098 37 - 852752 CCCAGG-AGGTTGGGA---TCCAACTGCAAGACCCAAATTC i dasNov3.JH570468 C 0 C 0 a score=126235.000000 s hg38.chr17_GL383564v2_alt 126152 13 + 133151 --AAAAGACAGTTGA s panTro5.chr17 16315259 13 + 83181570 --AAAAGACAGTTGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220126 13 + 83442489 --AAAAGACAGTTGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055283 13 + 4267968 --AAAAGACAGTTGA i gorGor5.CYUI01015385v1 C 0 I 1 s nomLeu3.chrUn_GL397460_1 2035533 13 - 2193130 --AAAAGACAGTTGA i nomLeu3.chrUn_GL397460_1 C 0 I 1 s rheMac8.chr16 30109069 13 - 77216781 --AAAAGATAGTTGG i rheMac8.chr16 C 0 I 1 s macFas5.chr16 28020719 13 - 80997621 --AAAAGATAGTTGG i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 2078433 13 + 10377808 --AAAAGATAGTTGG i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1963346 13 - 8458610 --AAAAGAGAGTTGG i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64908557 13 + 75148670 --AAAAGATAGTTGA i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2148371 13 + 4244037 --AAAAGATAGTTGG i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2171094 13 + 4569836 --AAAAGATAGTTGA i colAng1.NW_012122154v1 C 0 I 1 s calJac3.chr5 46127594 13 - 159171411 --AAAAAAGAGTTGA i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1837556 13 + 3513951 --AAAAAAGAGTTGA i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1886224 13 + 1920343 --AAAAAAGAGTTGA i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 7002626 13 - 7032639 --AAGAAAGAGTTGA i aotNan1.NW_018502359v1 C 0 I 1 s otoGar3.GL873537 22830502 4 + 28711273 ----AAGA------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22090266 13 - 122082543 --ATATAAGAGTGGA i mm10.chr11 C 0 C 0 s canFam3.chr9 21443085 13 + 61074082 --AGAAGACAGTTGA i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 438135 15 - 852752 AAAAGAGCAAGATGA i dasNov3.JH570468 C 0 I 1 e proCoq1.NW_012135969v1 3008763 12 + 8555354 I e micMur3.chr16 35922048 12 - 65901067 I a score=1420266.000000 s hg38.chr17_GL383564v2_alt 126165 102 + 133151 TCAACC------TTTTGTTGAAAGTGACCTT---------------------------AAGCT-------GTGTGTGTAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAGTAT-TTA-TTTTTATGCCTACAAAGCGATG----------- s panTro5.chr17 16315272 101 + 83181570 TCAACC------TCTTGTTGAAAGTGACCTT----------------------------AGCT-------GTGTGTGTAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAGTAT-TTA-TTTTTATGCCTACAAAGCGATG----------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220139 101 + 83442489 TCAACC------TCTTGTTGAAAGTGACCTT----------------------------AGCT-------GTGTGTGTAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAGTAT-TTA-TTTTTATGCCTACAAAGCGATG----------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055297 102 + 4267968 TCAACC------TCTTGTTGAAAGTGACCTT---------------------------AAGCT-------GTGTGTGTAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAGTAT-TTA-TTTTTATGCCTACAAAGCGATG----------- i gorGor5.CYUI01015385v1 I 1 C 0 s nomLeu3.chrUn_GL397460_1 2035547 102 - 2193130 TCAACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTGTGTGTAGTAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAGTAT-TTA-TTTTTATGCCTACAAAGCGATG----------- i nomLeu3.chrUn_GL397460_1 I 1 C 0 s rheMac8.chr16 30109083 102 - 77216781 TCAACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTGTGTAGAATACAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAACGT-TTA-CTTTTATGCCTACAAAGTGATG----------- i rheMac8.chr16 I 1 C 0 s macFas5.chr16 28020733 102 - 80997621 TCAACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTGTGTAGAATACAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAACGT-TTA-CTTTTATGCCTACAAAGTGATG----------- i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2078447 102 + 10377808 TCAACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTGTGTAGAATACAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAACGT-TTA-CTTTTATGCCTACAAAGTGATG----------- i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1963360 102 - 8458610 TCAACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTGTGTAGAATACAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAACGT-TTA-CTTTTATGCCTACAAAGTGATG----------- i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64908571 102 + 75148670 TCAACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTATGTAGAATACAACTAAT----TTTACTCTTGCCCTGGAA-----AAATAATGT-TTA-CTTTTATGCCTACAAAGTGATG----------- i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2148385 102 + 4244037 TCGACC------TCTTGTTGAAAGTAATCTT---------------------------AAGCT-------GTGTGTAGAATACAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAACGT-TTA-CTTTTATGCCTACAAAGTGATG----------- i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2171108 102 + 4569836 TCGACC------TCTTGTTGAAAGTGATCTT---------------------------AAGCT-------GTGTGTAGAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAATAT-TTA-TTTTTATGCCTACAAAGTGATG----------- i colAng1.NW_012122154v1 I 1 C 0 s calJac3.chr5 46127608 105 - 159171411 TCAACT------TC-TGTTGAAAGTGATCTT---------------------------AAGCTTTCAAAGATGTGTGGAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----A---AATAT-TTA-TTTTTATGCCTACAAAGCAATG----------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1837570 101 + 3513951 TCGACC------TC-TGTTGAAAGTGACCTT---------------------------AAGCT-------GTGTATGGAATAAAACTAAT----TTTGCTCTTGTCCTGGaa-----aaataatat-tta-tttttatGCCTACAAAGCAATG----------- i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1886238 101 + 1920343 TCAACC------TC-TGTTGAAAGTGACCTT---------------------------AAGCT-------GTGTGTGGCATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAATAT-TTA-TTTTTATGCCTACAAAGCAATG----------- i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 7002640 101 - 7032639 TCAACC------TC-TGTTGAAAGTGACCTT---------------------------AAGCT-------GTGTGTGGAATAAAACTAAT----TTTGCTCTTGCCCTGGAA-----AAATAATAT-TTA-TTTTTATGCCTACAAAGCAATG----------- i aotNan1.NW_018502359v1 I 1 C 0 s micMur3.chr16 35922060 102 - 65901067 TCAGCC------TCGGGATAAAAATGATCAT---------------------------AAGTT-------ACATGTGGAATAAAACTAAT----TCTGCTCTTGCCCTGGAA-----GAACAATAT-TTA-TTTTTACTCCTCCAAAGCGATG----------- i micMur3.chr16 I 12 C 0 s proCoq1.NW_012135969v1 3008775 102 + 8555354 TCAACC------TCTTGATGAAAATGATCTT---------------------------AAGTT-------ACATGTGGAATAAAACGAAT----TCTGCTCTTGCCCTGGAA-----GAATAATGT-TTA-TTTTTACTCCTACAAAACAATA----------- i proCoq1.NW_012135969v1 I 12 C 0 s otoGar3.GL873537 22830506 108 + 28711273 TTATCCATTCAATCCTGCTAAAAGTGATCTT---------------------------AAGTT-------ACTTATGGAATAAAACTATT----TCTGCTCTTGCTCTGGAA-----GATCAATAT-TTA-TTTTTACTCCTACAAAGCTATG----------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22090279 106 - 122082543 TTAATC------CCTAGTTAGGAATGATTTT---------------------------AAGTG-------ACACATGGGTTAAAATTAATAAAATCTGTTCTTGCACTAAGG-----GAACAGTAT-CTA-TTTTTACTTTTACAGAGCAATg----------- i mm10.chr11 C 0 I 1473 s canFam3.chr9 21443099 102 + 61074082 TCGACT------TCTTGCTGAACATGATCTT---------------------------AAGCT-------ACACGCGTA-TAAAATTAAT----TTTTCTCTTGCCTCAGGA-----GAACAATAT-TTATTTTTTATTTCTGCAAAGCAATA----------- i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 438151 144 - 852752 TCAACG------TCCTGCTGAATATGACCTTTCCTTCTTTCCTCTtttattattagagaagtt-------gtagatttagggaaa--aat----catgcacataatacagagttcccatgtaacatccta-ttattaaaaccttgcatttgtgtggtatatttg i dasNov3.JH570468 I 1 C 0 a score=441463.000000 s hg38.chr17_GL383564v2_alt 126267 37 + 133151 TT-TCATTTGACaaagaaaaa-----t-tttt----------ttctgattat-aa s panTro5.chr17 16315373 37 + 83181570 TT-TCATTTGACAAAGAAAAA-----T-TTTT----------TTCTGATTAT-AA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220240 37 + 83442489 TT-TCATTTGACAAAGAAAAA-----T-TTTT----------TTCTGATTAT-AA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055399 36 + 4267968 TT-TCATTTGAGAAAGAAAAA-------TTTT----------TTCTGATTAT-AA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035649 37 - 2193130 TT-TTATTTGACAAAGAACAA-----A-TTTT----------TTCTGATTAT-AA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109185 37 - 77216781 TT-TCATTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020835 37 - 80997621 TT-TCATTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078549 37 + 10377808 TT-TCATTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963462 37 - 8458610 TT-TCATTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908673 37 + 75148670 TT-TCATTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148487 37 + 4244037 TT-TCATTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171210 37 + 4569836 TT-TCTTTTGACAAAGAAAAA-----T-TGTT----------TTCTGATTAG-AA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127713 36 - 159171411 TT-TCATTTGACAAAGAAA-A-----T-TTTT----------TTCTGATTAT-AA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837671 37 + 3513951 TT-TCATTTGACAAAGAAATT-----T-TTTT----------TTCTGATTAT-AA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886339 37 + 1920343 TT-TTATTTGACAAAGAAAAT-----T-TTTT----------TTCTGATTAT-AA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002741 38 - 7032639 TT-TCATTTGACAAAGAAAAA-----TATTTT----------TTCTGATTAT-AA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922162 39 - 65901067 TT-TCATTTGAAAAACAGATAAA---T-TTTT----------TTCTGATTAT-AA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3008877 42 + 8555354 TT-TCATTTGAAAAACAGATAAAAATT-TTTA----------TTCTGATTAT-AA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22830614 38 + 28711273 TTATGTTTTGAAAAACAGACA-------TTTT----------TCCTGACTATAAA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443201 42 + 61074082 TT-TCATTCAACAAACAAGCAAAAATA-TATT----------TTTTGATTGT-AA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 438295 47 - 852752 tt-acagttaacaaaagaaca-----t-ttttataattgtacttttaactat-ag i dasNov3.JH570468 C 0 I 270 e mm10.chr11 22090385 1473 - 122082543 I a score=284263.000000 s hg38.chr17_GL383564v2_alt 126304 22 + 133151 gcatagcaatgaactct-aaaaa s panTro5.chr17 16315410 22 + 83181570 GCATAGCAATGAACTCT-AAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220277 22 + 83442489 GCATAGCAATGAACTCT-AAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055435 23 + 4267968 GCATAGCAATGAACTCTAAAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035686 22 - 2193130 GCATAGCAGTGAACTCT-AAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109222 22 - 77216781 GCATAGCAATGATCTTT-GAAAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020872 22 - 80997621 GCATAGCAATGATCTTT-GAAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078586 22 + 10377808 GCATAGCAATGATCTTT-GAAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963499 22 - 8458610 GCATAGCAATGATCTTT-GAAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908710 22 + 75148670 GCATAGCAATGATCTTT-GAAAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148524 22 + 4244037 GCATAGCAGTGATCTTT-GAAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171247 22 + 4569836 GCATAACAATGATCTTT-GAAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127749 22 - 159171411 GCATAGCAATGATCTCT-AAAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837708 22 + 3513951 GCATAGCAATGATCTCT-AAAAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886376 22 + 1920343 GCATAGCAATGATCTCT-AAAAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002779 22 - 7032639 GCATAGCAATGATCTCT-AAAAC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922201 22 - 65901067 GTGTAAGAACGGTCCCT-AAAAA i micMur3.chr16 C 0 I 1 s proCoq1.NW_012135969v1 3008919 22 + 8555354 GCATAACAATGGTCCCT-AAAGA i proCoq1.NW_012135969v1 C 0 I 44 s otoGar3.GL873537 22830652 22 + 28711273 GCATAGCAATGGTTCCT-GAAAT i otoGar3.GL873537 C 0 I 9 s canFam3.chr9 21443243 22 + 61074082 GCATGGTAATGATCTCT-AAAAA i canFam3.chr9 C 0 I 1 e mm10.chr11 22090385 1473 - 122082543 I e dasNov3.JH570468 438342 270 - 852752 I a score=141173.000000 s hg38.chr17_GL383564v2_alt 126326 10 + 133151 atgaaaaaat s panTro5.chr17 16315432 10 + 83181570 ATGAAAAAAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220299 10 + 83442489 ATGAAAAAAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055458 10 + 4267968 ATGAAAAAAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035708 10 - 2193130 ATGAAAAAAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109244 10 - 77216781 ATGAAGAAAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020894 10 - 80997621 ATGAAGAAAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078608 10 + 10377808 ATGAAGAAAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963521 10 - 8458610 ATGAAGAAAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908732 10 + 75148670 ATGAAGAAAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148546 10 + 4244037 ATGAAGAAAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171269 10 + 4569836 ATGAAGAAAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127771 10 - 159171411 ATGaaaaaat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837730 10 + 3513951 ATGAAAAAAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886398 10 + 1920343 ATGAAAAAAT i cebCap1.NW_016107730v1 C 0 I 23 s aotNan1.NW_018502359v1 7002801 10 - 7032639 ATGAAAAAAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922224 10 - 65901067 ATGAAAAAAC i micMur3.chr16 I 1 C 0 s otoGar3.GL873537 22830683 10 + 28711273 ATGaaaaaat i otoGar3.GL873537 I 9 C 0 s canFam3.chr9 21443266 10 + 61074082 ATGAAAAAAA i canFam3.chr9 I 1 C 0 e mm10.chr11 22090385 1473 - 122082543 I e proCoq1.NW_012135969v1 3008941 44 + 8555354 I e dasNov3.JH570468 438342 270 - 852752 I a score=91950.000000 s hg38.chr17_GL383564v2_alt 126336 20 + 133151 ---aca-------gaaac-atataaagaat-a s panTro5.chr17 16315442 20 + 83181570 ---ACA-------GAAAC-ATATAAAGAAT-A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220309 20 + 83442489 ---ACA-------GAAAC-ATATAAAGAAT-A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055468 20 + 4267968 ---ACA-------GAAAC-ATATAAAGACT-A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035718 20 - 2193130 ---ACA-------GAAAC-ATATAAAGAAT-A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109254 21 - 77216781 ---ACA-------AAAAT-ATATAAAGAATAA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28020904 21 - 80997621 ---ACA-------AAAAT-ATATAAAGAATAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078618 21 + 10377808 ---ACA-------AAAAT-ATATAAAGAATAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963531 21 - 8458610 ---ACA-------AAAAT-ATATAAAGAATAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908742 21 + 75148670 ---ACA-------AAAAT-ATATAAAGAATAA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148556 21 + 4244037 ---ACA-------AAAAT-ATATAAAGAATAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171279 21 + 4569836 ---ACA-------AAAAT-ATATAAAGAATAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127781 20 - 159171411 ----ta-------aaaaa-aaataaaGAAGGA i calJac3.chr5 C 0 I 4 s saiBol1.JH378271 1837740 16 + 3513951 ----TA-------AAAAA-----AAAAAAGGA i saiBol1.JH378271 C 0 I 4 s aotNan1.NW_018502359v1 7002811 21 - 7032639 ----TA-------AAAAAAAAATAAAGAAGGA i aotNan1.NW_018502359v1 C 0 I 4 s micMur3.chr16 35922234 19 - 65901067 ---AC--------ACAAA-ATATAAGGAATA- i micMur3.chr16 C 0 I 5 s otoGar3.GL873537 22830693 27 + 28711273 ---acaaaaaaagaaaaa-aaagaaagaaaa- i otoGar3.GL873537 C 0 I 5 s canFam3.chr9 21443276 23 + 61074082 AACCCA-------GAAAA-ATATGAAGAAGA- i canFam3.chr9 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e proCoq1.NW_012135969v1 3008941 44 + 8555354 I e dasNov3.JH570468 438342 270 - 852752 I e cebCap1.NW_016107730v1 1886408 23 + 1920343 I a score=62400.000000 s hg38.chr17_GL383564v2_alt 126356 8 + 133151 --tagcattc---------- s panTro5.chr17 16315462 8 + 83181570 --TAGCATTC---------- i panTro5.chr17 C 0 I 1 s panPan2.chr17 16220329 8 + 83442489 --TAGCATTC---------- i panPan2.chr17 C 0 I 1 s gorGor5.CYUI01015385v1 4055488 8 + 4267968 --TAGCATTC---------- i gorGor5.CYUI01015385v1 C 0 I 1 s nomLeu3.chrUn_GL397460_1 2035738 8 - 2193130 --TAGCATTC---------- i nomLeu3.chrUn_GL397460_1 C 0 I 1 s rheMac8.chr16 30109275 8 - 77216781 --TAGTATTC---------- i rheMac8.chr16 C 0 I 1 s macFas5.chr16 28020925 8 - 80997621 --TAGTATTC---------- i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 2078639 8 + 10377808 --TAGTATTC---------- i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1963552 8 - 8458610 --TAGTATTC---------- i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64908763 8 + 75148670 --TAGTATTC---------- i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2148577 8 + 4244037 --TAGTATTC---------- i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2171300 8 + 4569836 --TAGTATTC---------- i colAng1.NW_012122154v1 C 0 I 1 s calJac3.chr5 46127805 8 - 159171411 --TAGCATCC---------- i calJac3.chr5 I 4 I 1 s saiBol1.JH378271 1837760 8 + 3513951 --TAATATCC---------- i saiBol1.JH378271 I 4 I 1 s cebCap1.NW_016107730v1 1886431 8 + 1920343 --TAGCATCC---------- i cebCap1.NW_016107730v1 I 23 I 1 s aotNan1.NW_018502359v1 7002836 8 - 7032639 --TAGCATCC---------- i aotNan1.NW_018502359v1 I 4 I 1 s micMur3.chr16 35922258 6 - 65901067 --CAGC--TC---------- i micMur3.chr16 I 5 I 3 s otoGar3.GL873537 22830725 8 + 28711273 --TAATCGTC---------- i otoGar3.GL873537 I 5 I 2 s canFam3.chr9 21443299 20 + 61074082 AATAACAGCTACCTGGATTC i canFam3.chr9 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e proCoq1.NW_012135969v1 3008941 44 + 8555354 I e dasNov3.JH570468 438342 270 - 852752 I a score=968448.000000 s hg38.chr17_GL383564v2_alt 126364 75 + 133151 gaaggctcaccactcagagtctattactgata---agctttccagactgttttctaagcatagttatgaataaaaCTG s panTro5.chr17 16315471 75 + 83181570 GAAGGCTCACCACTCAGAGTCTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATAGTTATGAATAAAACTG i panTro5.chr17 I 1 C 0 s panPan2.chr17 16220338 75 + 83442489 GAAGGCTCACCACTCAGAGTCTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATAGTTATGAATAAAACTG i panPan2.chr17 I 1 C 0 s gorGor5.CYUI01015385v1 4055497 75 + 4267968 GAAGGCTCACCACTCAGAGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATAGTTATGAATAAAACTG i gorGor5.CYUI01015385v1 I 1 C 0 s nomLeu3.chrUn_GL397460_1 2035747 73 - 2193130 GAAGGCTCACCACTC--AGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTATGAATAAAACTG i nomLeu3.chrUn_GL397460_1 I 1 C 0 s rheMac8.chr16 30109284 73 - 77216781 GAAGGCTCACCACTC--GGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTATGATAAAAACTG i rheMac8.chr16 I 1 C 0 s macFas5.chr16 28020934 73 - 80997621 GAAGGCTCACCACTC--GGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTATGATAAAAACTG i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2078648 73 + 10377808 GAAGGCTCACCACTC--GGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTATGATAAAAACTG i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1963561 73 - 8458610 GAAGGCTCACCACTC--GGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTACGATAAAAACTG i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64908772 73 + 75148670 GAAGGTTCACCACTT--GGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTATGATAAAAACTG i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2148586 73 + 4244037 GAAGGCTCACCACTC--GGTTTATTACTGATA---AGCTTTCCAGACTGTTTTCTAAGCATATTTATGATAAAAACTG i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2171309 73 + 4569836 GAAGGCTCACCACTC--AGTTTATTACTGATA---AGCTTTCCAGACTCTTTTCTAAGCATATTTATGAATAAAACTG i colAng1.NW_012122154v1 I 1 C 0 s calJac3.chr5 46127814 75 - 159171411 ACAGGCTCACCACTCAGAGTTTATTACTGATA---AGCTTTCCAGACTCCTTTCCAAGCATACTTATGACTAAAACTG i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1837769 75 + 3513951 GCAGGCTCACCACTCAGAGTTTATTACTGATA---AGCTTTCCAGACTCCTTTCTTAGCATATTTATGAATAAAACTG i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1886440 75 + 1920343 GCAGGCTCACCACTCAGAGTTTATTATTGATA---AGCTTTCCAGACTCCTTCCCAAGCGTATTTATAAATAAAACTG i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 7002845 75 - 7032639 GCAGGCTCACCACTCAGAGTTTATTACTGATA---AGCTTTCCAGACTCCTATCCAAGCATATTTATGAATAAAATTG i aotNan1.NW_018502359v1 I 1 C 0 s micMur3.chr16 35922267 78 - 65901067 GAACACTCACCACTCAGAATTTATCACTGATATATATCTTTCCAGGCTCCTTTCTAAGCATATTTATAAATAAAACCG i micMur3.chr16 I 3 C 0 s proCoq1.NW_012135969v1 3008985 78 + 8555354 gaatactcaccactcagagtttactgctgatatatatctttccagactcctttctaagcatatttacaaataaaaCTG i proCoq1.NW_012135969v1 I 44 C 0 s otoGar3.GL873537 22830735 77 + 28711273 GAATGCTCACAACCTAGAGTTTATTACTGATGTATATCTCTTTGGACTCCTTTCTAAGCATA-TTACAAATAGCACTG i otoGar3.GL873537 I 2 C 0 s canFam3.chr9 21443319 77 + 61074082 TCAACTTCACC-TTCAGCATTTATTACTGACATAGATGTTTCCAGATTCCTTTCTAAGTATATTTACAAATAAAACTG i canFam3.chr9 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e dasNov3.JH570468 438342 270 - 852752 I a score=354256.000000 s hg38.chr17_GL383564v2_alt 126439 24 + 133151 GGATTATGTTGCTTTTA----CCTTTTT-------------------- s panTro5.chr17 16315546 24 + 83181570 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220413 24 + 83442489 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055572 24 + 4267968 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035820 24 - 2193130 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109357 24 - 77216781 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021007 24 - 80997621 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078721 24 + 10377808 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963634 24 - 8458610 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908845 24 + 75148670 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148659 24 + 4244037 GGATTATGTTGCTTTTA----CCTTTTT-------------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171382 24 + 4569836 GGATTATGTTATTTTTA----CCTTTTT-------------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127889 24 - 159171411 GGATTATGATACCTTTA----CCTTTTT-------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837844 24 + 3513951 AGATTATGATACCTTTA----CCTTTTT-------------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886515 24 + 1920343 GGATTATGATACCTTTA----CCTTTTT-------------------- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002920 24 - 7032639 GGATTATGATACCTTTA----TCTTTTT-------------------- i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922345 24 - 65901067 GGATGATGCTGCTTTTA----CTTTTTT-------------------- i micMur3.chr16 C 0 I 19 s proCoq1.NW_012135969v1 3009063 24 + 8555354 GGATTATGCTACTTTTA----CCTTTTT-------------------- i proCoq1.NW_012135969v1 C 0 I 4 s otoGar3.GL873537 22830812 24 + 28711273 GGATTATGCTGCTTTTA----CTTTTTT-------------------- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443396 24 + 61074082 GGATTATGCTATTTTTA----CATTTTT-------------------- i canFam3.chr9 C 0 I 2 s dasNov3.JH570468 438612 48 - 852752 gggtctcgttgccttcagtgtcctgcttccctggctttctctctcttc i dasNov3.JH570468 I 270 C 0 e mm10.chr11 22090385 1473 - 122082543 I a score=16172.000000 s hg38.chr17_GL383564v2_alt 126463 23 + 133151 CTTTAAAAAA-TTTTTTTGTTTC-A s panTro5.chr17 16315570 23 + 83181570 CTTTAAAAAA-TATTTTTGTTTC-A i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220437 23 + 83442489 CTTTAAAAAA-TATTTTTGTTTC-A i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055596 22 + 4267968 CTTTAAAAAA-T-TTTTTGTTTC-A i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035844 23 - 2193130 CTTTAAAAAA-AATTTTTGTTTC-A i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109381 23 - 77216781 CTTTAAAAAT-TTTTTTTGTTTC-T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021031 23 - 80997621 CTTTAAAAAT-TTTTTTTGTTTC-T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078745 23 + 10377808 CTTTAAAAAT-TTTTTTTGTTTC-T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963658 22 - 8458610 CTTTAAAAA--ATTTTTTGTTTC-T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908869 18 + 75148670 CTTCAAAAAA------TTGTTTC-T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148683 24 + 4244037 CTTTAAAAAATTTTTTTTGTTTC-T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171406 24 + 4569836 CTTTAAAAAC-TTTTTTTGTTTCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127913 25 - 159171411 CTTTAAAAATTTTTTTTTGTTTttt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837868 6 + 3513951 CTTTAA------------------- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886539 17 + 1920343 CTTTCT---TTATTTTTTGT----- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002944 10 - 7032639 CTTTAA-----ATTT---------- i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3009091 14 + 8555354 TTTTAA-----AATTTTGG------ i proCoq1.NW_012135969v1 I 4 C 0 s otoGar3.GL873537 22830836 18 + 28711273 ACTTAA-----ATTTTtttttta-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443422 15 + 61074082 CTTTAAAAAT-TTTTG--------- i canFam3.chr9 I 2 C 0 s dasNov3.JH570468 438660 20 - 852752 ctttaaattt-tattctctta---- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e micMur3.chr16 35922369 19 - 65901067 I a score=1499538.000000 s hg38.chr17_GL383564v2_alt 126486 122 + 133151 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------tgaacagtatgatgtgatctgacattcgtgtatacttatgtaaccaccac---------tgcactcaaga s panTro5.chr17 16315593 122 + 83181570 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------tgaacagtatgatgtgatctgacattcgtgtatacttatgtaaccaccac---------tgcactcaaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220460 122 + 83442489 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------tgaacagtatgatgtgatctgacattcgtgtatacttatgtaaccaccac---------tgcactcaaga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055618 122 + 4267968 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------tgaacagtatgatgtgatctgacattcgtgtatacttatgtaaccaccac---------tgcaatcaaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035867 122 - 2193130 -------------------------------ttttttat-ggt--taactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------cgaacagtatgatgtgatctgacatttgtgtatacttatataaccaccac---------tgcactcaaga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109404 122 - 77216781 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttac------------------------------tgaacagtatgatgtgatctgacatttgtacatacttatgtaaccaccac---------tgcactcaaga i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021054 122 - 80997621 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttac------------------------------tgaacagtatgatgtgatctgacatttgtacatacttatgtaaccaccac---------tgcactcaaga i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078768 122 + 10377808 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttac------------------------------tgaacagtatgatgtgatctgacatttgtacatacttatgtaaccaccac---------tgcactcaaga i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963680 122 - 8458610 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcctatttttac------------------------------tgaacagtatgatgtgatctgacatttgttcatacttatgtaaccaccac---------tgcactcaaga i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64908887 122 + 75148670 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------tgaacagtatgatgtgatctgacatttgtacatacttatgtaaccaccac---------tgcactcaaga i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148707 122 + 4244037 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttac------------------------------tgaacagtatgatgtgatctgacatttgttcatacttatgtaaccaccac---------tgcactcaaga i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171430 122 + 4569836 -------------------------------ttttttat-ggt--caactttattgaaatataatttac-------atataat-aaaaagttcccatttttag------------------------------tgaacagtatgatgtgatctgacatttgtacataattatgtaaccaccac---------tgcactcaaga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46127938 111 - 159171411 -------------------------------tttttaat-ggc-----ctttattgaaatataatttac-------atataat--aaaggctcctgtttttag------------------------------tgaacggtttgatgtgatctgacatttgtgtatactta-------aacac---------tgccctcaaga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1837874 118 + 3513951 -------------------------------TTTTTTAT-GGT-----ctttattaaaatataatttac-------atataat--aaaagctcccatttttag------------------------------tgaacagtttgatgtgacccaacatttgtgtatactcacgtaaccaccat---------cgcactcaaga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886556 118 + 1920343 -------------------------------ttttttat-agt-----ctttatcgaaatataatttac-------atataat--aaaagctcccatttttag------------------------------tgaacagcttgatgtgatctgacatttgtgtatacttatgtaaccaccac---------tgcactcaaga i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7002954 106 - 7032639 -------------------------------TTTTTTAT-GGT-----ctttattgaactataatttac-------atataat--aaaagctcccatttttag------------------------------tgaacagtttgatgcgatctgacatttgt------------aaccaccac---------tgcactcaaga i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922388 118 - 65901067 -------------------------------ttttttat--gt--caact---ttgaaatataatttgc-------atataat-aatatgctcccatttttag------------------------------tgtatagtgtgatgtgatttgacaattgtatatacttatgtatccaccac---------tacactcaaga i micMur3.chr16 I 19 I 67 s proCoq1.NW_012135969v1 3009105 119 + 8555354 -------------------------------ttttttat--gt--aaactttattgaaatataatttac-------atataat-aaaatgcttccatttttag------------------------------tgtaca--gtgatgtgatttgacaattgtatatacttatgtaaccaccac---------tacactcaaga i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22830854 100 + 28711273 -------------------------------------ct--tt--caactttattgaaatatagttcac-------atataataaaaatgctcccacttttag------------------------------cgtacagtttgatgtgatttggcaattgtgtatgc-tgcgtagaca------------------------ i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443437 123 + 61074082 -------------------------------ttttttataaac--caactttattaatgtatacttcat-------atataat-aaagtacacataattgtag------------------------------tgtgtagtttgatgagatttgacaattgtatattcttaagtaaccaccat---------gacactcaaga i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 438680 196 - 852752 taaaagactccggtgaaaggagtaagacctactctttat-ggaagtaacctaatcaaaaggcccttaactgaagtaacctaat-taaaagttcccaccgacaacaggtccacacccacaggaatggatcaactttaagaacataatct--tctggggtccatacagcttca---aatcatcacacagtcttatggattaaaaa i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I a score=6695.000000 s hg38.chr17_GL383564v2_alt 126608 1 + 133151 t s panTro5.chr17 16315715 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220582 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055740 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035989 1 - 2193130 t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109526 1 - 77216781 t i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021176 1 - 80997621 t i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078890 1 + 10377808 t i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963802 1 - 8458610 t i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909009 1 + 75148670 t i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148829 1 + 4244037 t i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171552 1 + 4569836 t i colAng1.NW_012122154v1 C 0 C 0 s canFam3.chr9 21443560 1 + 61074082 t i canFam3.chr9 C 0 I 184 s dasNov3.JH570468 438876 1 - 852752 c i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e proCoq1.NW_012135969v1 3009224 0 + 8555354 C e micMur3.chr16 35922506 67 - 65901067 I e otoGar3.GL873537 22830954 0 + 28711273 C e aotNan1.NW_018502359v1 7003060 0 - 7032639 C e cebCap1.NW_016107730v1 1886674 0 + 1920343 C e saiBol1.JH378271 1837992 0 + 3513951 C e calJac3.chr5 46128049 0 - 159171411 C a score=308062.000000 s hg38.chr17_GL383564v2_alt 126609 31 + 133151 ---ctttatggaactttccatcacc-cccaaaatt- s panTro5.chr17 16315716 31 + 83181570 ---ctttatggaactttccatcacc-cccaaaatt- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220583 31 + 83442489 ---ctttatggaactttccatcacc-cccaaaatt- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055741 31 + 4267968 ---ctttatggaactttccatcacc-cccaaagtt- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2035990 31 - 2193130 ---ctttatggaactttccatcacc-cccagaatt- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109527 31 - 77216781 ---ctttatggaactttctatcacc-ccaaaaatt- i rheMac8.chr16 C 0 I 1 s macFas5.chr16 28021177 31 - 80997621 ---ctttatggaactttctatcacc-ccaaaaatt- i macFas5.chr16 C 0 I 1 s macNem1.NW_012014910v1 2078891 31 + 10377808 ---ctttatggaactttccatcacc-ccaaaaatt- i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1963803 31 - 8458610 ---ctttatggaactttccatcacc-cccaaaatt- i cerAty1.NW_012006043v1 C 0 I 1 s chlSab2.chr16 64909010 31 + 75148670 ---ctttatggaactttccatcacc-ccaaaaatt- i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2148830 31 + 4244037 ---ctttatggaactttccatcacc-ccaaaaatt- i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2171553 31 + 4569836 ---ctttatggaactttccatcacc-ccaaaaatt- i colAng1.NW_012122154v1 C 0 I 360 s calJac3.chr5 46128049 28 - 159171411 ------tatggaactttccatcacc-ccctaaatt- i calJac3.chr5 C 0 I 1 s saiBol1.JH378271 1837992 28 + 3513951 ------gatggaacttgccgtcacc-ccctaaatt- i saiBol1.JH378271 C 0 I 1 s cebCap1.NW_016107730v1 1886674 28 + 1920343 ------tatggaactttccgtcgct-ccttaagtc- i cebCap1.NW_016107730v1 C 0 I 1 s aotNan1.NW_018502359v1 7003060 28 - 7032639 ------tatggaactttccatcacc-ctctaaatt- i aotNan1.NW_018502359v1 C 0 I 1 s proCoq1.NW_012135969v1 3009224 28 + 8555354 ------tatggaactttctaccacc-ctacaaatt- i proCoq1.NW_012135969v1 C 0 I 1 s otoGar3.GL873537 22830954 27 + 28711273 --------tgggactttctatcacctcctcaaatt- i otoGar3.GL873537 C 0 I 1 s canFam3.chr9 21443745 31 + 61074082 ---ttttaaagaactttccataatt-cttcaaata- i canFam3.chr9 I 184 C 0 s dasNov3.JH570468 438877 35 - 852752 aattgttctagtaacatatatataa-cctaaaattt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e micMur3.chr16 35922506 67 - 65901067 I a score=333999.000000 s hg38.chr17_GL383564v2_alt 126640 41 + 133151 cccagtt-tgtc-t------------------------------ttgcagtca----gttcttccc----ccacccccaga s panTro5.chr17 16315747 41 + 83181570 cccagtt-tgtc-t------------------------------ttgcagtca----gttcttccc----ccacccccaga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220614 41 + 83442489 cccagtt-tgtc-t------------------------------ttgcagtca----gttcttccc----ccacccccaga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055772 41 + 4267968 cccagtt-tgtc-t------------------------------ttgcagtca----attcttccc----ccactcccaga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036021 41 - 2193130 cccagtt-tgcc-c------------------------------ttgcagtca----gttcctgcc----ccatccccaga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109559 41 - 77216781 cccagtt-tgcc-c------------------------------ttatagtca----gttcctccc----ctatccccaga i rheMac8.chr16 I 1 C 0 s macFas5.chr16 28021209 41 - 80997621 cccagtt-tgcc-c------------------------------ttatagtca----gttcctccc----ctatccccaga i macFas5.chr16 I 1 C 0 s macNem1.NW_012014910v1 2078923 41 + 10377808 cccagtt-tgcc-c------------------------------ttatagtca----gttcctccc----ctatccccaga i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1963835 41 - 8458610 cccagtt-tgcc-c------------------------------ttatagtca----gttcctccc----ctatccccaga i cerAty1.NW_012006043v1 I 1 C 0 s chlSab2.chr16 64909042 41 + 75148670 cccagtt-tgcc-c------------------------------ttatagtca----gtttctccc----ctatccccaga i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2148862 41 + 4244037 cccagtt-tgcc-c------------------------------ttatagtca----gttcctccc----ctatccccaga i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2171944 41 + 4569836 cccagtt-tgcc-c------------------------------ttacagtca----gttcctccc----ctatccccaga i colAng1.NW_012122154v1 I 360 C 0 s calJac3.chr5 46128078 41 - 159171411 cccagct-tgtc-c------------------------------ttgcagttc----atccttccc----gtatccccaga i calJac3.chr5 I 1 C 0 s saiBol1.JH378271 1838021 41 + 3513951 cctagct-tgtc-c------------------------------ctgcagttc----atccctccg----ctgtccccaga i saiBol1.JH378271 I 1 C 0 s cebCap1.NW_016107730v1 1886703 41 + 1920343 cccagct-tgtc-t------------------------------ttgcagttc----atccctccc----ctaaccccaga i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 7003089 41 - 7032639 cccagtt-tgtc-c------------------------------ttgcagttc----atccctccc----ctgtccccaga i aotNan1.NW_018502359v1 I 1 C 0 s proCoq1.NW_012135969v1 3009253 37 + 8555354 cgtagtt-tccc-c------------------------------ttgtagtca----actgccccc----t-ttcaac--- i proCoq1.NW_012135969v1 I 1 C 0 s otoGar3.GL873537 22830982 39 + 28711273 cctatttctccc-c------------------------------tcgtagtca----agtctcccc----tctttagc--- i otoGar3.GL873537 I 1 C 0 s canFam3.chr9 21443776 46 + 61074082 tttagtg-ccccat------------------------------ttgcaggta----aacctccccaattctggtcctagc i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 438912 68 - 852752 ccccttt-tgac-cacattcaaatatataattcagtgctgttaattatgttcacaatgttgttcta----ccgt------- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e micMur3.chr16 35922506 67 - 65901067 I a score=1471412.000000 s hg38.chr17_GL383564v2_alt 126681 109 + 133151 ccctggcaaccatcaacctgttctttatgttactacagatttcaccatgtctagaatttcatataaaagaaatcatgcagtatgc--acta---tttt---------tcattttgcctatcat s panTro5.chr17 16315788 109 + 83181570 ccctggcaaccatcaacctgttctttatgttactacagatttcaccatgtctagaatttcatataaaagaaatcatgcagtatgc--acta---tttt---------tcattttgcctatcat i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220655 109 + 83442489 ccctggcaaccatcaacctgttctttatgttactacagatttcaccatgtctagaatttcatataaaagaaatcatgcagtatgc--acta---tttt---------tcattttgcctaccat i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055813 109 + 4267968 ccctggcaaccatcaacctgttctttatgttactacagatttcaccatgtctagaatttcatataaaagaaatcatgcagtatgc--acta---tttt---------tcattttgcctatcat i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036062 104 - 2193130 ccctggcaatcatcagtctgttctttatgttactatagatttcaccatgtctagaatttcatat-----aaatcatgcagtatga--acta---tttt---------tcattttgcctatcat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109600 109 - 77216781 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataatgcagtgtga--actc---tttt---------tcgttttgcctaacgt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021250 109 - 80997621 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataatgcagtgtga--actc---tttt---------tcgttttgcctaacat i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2078964 109 + 10377808 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataatgcagtgtga--actc---tttt---------tcgttttgcctaacat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963876 109 - 8458610 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataatgcagtgtga--actc---tttt---------tcgttttgcctaacat i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909083 109 + 75148670 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataacgcagtgcga--actc---tttt---------tcattttgcttaacat i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2148903 109 + 4244037 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataatgcagtgtga--actc---tttt---------ttgttttgcctaacat i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2171985 109 + 4569836 ccctggcaaccatcaacctgttctttatgttactatagatttcaccatgtctagaatttcatataaaagaaataatgcagtgcga--actc---tttt---------tcattttgcctaacat i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128119 109 - 159171411 ccctggcaatcaccaatctgttctttatgttactatagattttaccatttctagaatttcatacaaaagaaatcatgcagtgcga--tttt---tttt---------tcattttgcctaacat i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838062 107 + 3513951 ccctggcactcatcagtctgttctttatgttactacagattttaccatttctagaatttcatacaaaagaaataatgcagtgtga----tt---tttt---------tcattttgcctaacat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886744 111 + 1920343 ccctggcaatcgtcgatctgttctttatgttactacagattttaccatttctagaatctcatacaaaagaaatcatgcagtgcaaattttt---tttt---------tcattttgcctaacat i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003130 110 - 7032639 ccctggcaatcatcaatctattctttacgttactatagattttaccatttctagaatttcatacaaaagaaatcatgcagtgtga-atttt---tttt---------tcattttgcctaacat i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922573 109 - 65901067 cccttgcaaccatcaatctgctctttatgttaccacaaatttcactatttctataatttcatacagaagaaatcctatagtgtga--actc---tttt---------tcacttaacatagtat i micMur3.chr16 I 67 I 86 s proCoq1.NW_012135969v1 3009290 108 + 8555354 cccttggaaccatcaatcttttctttatgttattacagatttcactatttctagaatttcatatagaagaaatcttacagtgtga--actc----ttt---------tcacttagcataacat i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22831021 112 + 28711273 ccctggcaaccatcgatctgttcttcacgtcactacatatttcattatttctcgaatttcgtatagaagaaatcctacagtgtga--gctcttttttt---------tcacttagcataacat i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443822 103 + 61074082 ctcaggcaaccatcaatctttt------gtcaccataaaatttgccatttctagtatctcatataaatgaaatcatgcagtgtga--actc---tttt---------ctaattagaataacat i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 438980 107 - 852752 cactaccatccatta---------ttttgacactatggatttacttattctaattagttcacatcagtgagattatacaaaattt--gtcc---ttttgtgtattacttatttcactcaac-- i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I a score=468706.000000 s hg38.chr17_GL383564v2_alt 126790 45 + 133151 gttttgt-------atctgttca--ttgttgcaggtatcaataattcatttttt-- s panTro5.chr17 16315897 45 + 83181570 gttttgt-------atctattca--tcgttgcaggtatcaataattcatttttt-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220764 44 + 83442489 gttttgt-------atctattca--tcattgcaggtatcaataattca-ttttt-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055922 43 + 4267968 gttttgt-------atctattca--ttgttgtaggtatcaataattca--tttt-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036166 44 - 2193130 gttttgt-------atgtattca--ttgttgcaggtatcaatagttca-ttttt-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109709 45 - 77216781 gttttgt-------atctattta--ttgttgcaggcatcaataattcatttttt-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021359 45 - 80997621 gttttgt-------atctattta--ttgttgcaggcatcaataattcatttttt-- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079073 44 + 10377808 gttttgt-------atctattta--ttgttgcaggcatcaataattca-ttttt-- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1963985 43 - 8458610 gttttgt-------atctattca--ttgttgcaggtatcaataattca--tttt-- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909192 43 + 75148670 gttttat-------atctattca--ttgttgcaggtatcaataattca--tttt-- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149012 43 + 4244037 gttttgt-------atctattca--ttgttgcaggtattaataattca--tttt-- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172094 43 + 4569836 gttttat-------atctattca--ttgttgcaggtatcaataattca--tttt-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128228 43 - 159171411 gttttat-------atctattca--tcattgcaggtatcaataattca--tttt-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838169 42 + 3513951 gttttat-------atctattca--tcattgcaggtatcaataattca---gtt-- i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886855 42 + 1920343 gttttct-------atctattca--tcactgcaggtatcaataattca---ttt-- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003240 42 - 7032639 gttttat-------atctattca--tcattgcaggtatcagtaattca---ttt-- i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3009398 47 + 8555354 tttttat-------atttatccacgttgttgcagctatcaataatttattcctc-- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22831133 47 + 28711273 tttatat-------atttgttggtgctgctgcaggtatcaataatttgctcttc-- i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21443925 44 + 61074082 tatttat-------attcatcc---tttttgcagatatcaatagctcattcctt-- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 439087 56 - 852752 gtgatgtcctcaaggttcatccatgttgttgcatgtatcagaaattcattcctttt i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22090385 1473 - 122082543 I e micMur3.chr16 35922682 86 - 65901067 I a score=38220.000000 s hg38.chr17_GL383564v2_alt 126835 2 + 133151 tt s panTro5.chr17 16315942 2 + 83181570 tt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220808 2 + 83442489 tt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055965 2 + 4267968 tt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036210 2 - 2193130 tt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109754 2 - 77216781 tt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021404 2 - 80997621 tt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079117 2 + 10377808 tt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964028 2 - 8458610 tt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909235 2 + 75148670 tt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149055 2 + 4244037 tt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172137 2 + 4569836 tt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128271 2 - 159171411 tt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838211 2 + 3513951 tt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886897 2 + 1920343 tt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003282 2 - 7032639 tt i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3009445 2 + 8555354 tt i proCoq1.NW_012135969v1 C 0 I 38 s otoGar3.GL873537 22831180 2 + 28711273 tt i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22091858 2 - 122082543 tt i mm10.chr11 I 1473 C 0 s canFam3.chr9 21443969 2 + 61074082 tt i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 439143 2 - 852752 tt i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35922682 86 - 65901067 I a score=446655.000000 s hg38.chr17_GL383564v2_alt 126837 39 + 133151 tctactgaat--ggcatcccattatacagataaactacatt s panTro5.chr17 16315944 39 + 83181570 tctactgaat--ggcatcccattatatagataaactacatt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220810 39 + 83442489 tctactgaat--ggcatcccattatacagataaactacatt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4055967 39 + 4267968 tctactgaat--ggcatcccattgtatagataaactacatt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036212 39 - 2193130 cctactgaat--agtataccattgtatagataaactacctt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109756 39 - 77216781 tctactgaat--agtatcccattgtatagataaactacatt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021406 39 - 80997621 tctactgaat--agtatcccattgtatagataaactacatt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079119 39 + 10377808 tctactgaat--agtatcccattgtatagataaactacatt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964030 39 - 8458610 tctactgaat--agtatcccattgtatagataaactacatt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909237 39 + 75148670 tctactgaat--agtatcccattgtatagataaactacatt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149057 39 + 4244037 tctactgaat--agtatcccattgtatagataaactacatt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172139 40 + 4569836 tctactgaattaggtatcccattgtatag-taaactacatt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128273 38 - 159171411 tctactgaat--aatatcaccttgtata-ataaaccacatt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838213 39 + 3513951 tctactgaat--aatatcccattgtatagataaaccacatt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886899 39 + 1920343 tctactgaat--aatatcccattgtatagataaaccacatt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003284 39 - 7032639 tctactgaat--aatatcccattgtatagataaaccacatt i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22831183 35 + 28711273 cttgtcgagt--g----cttatcgtaggggtgaactacatt i otoGar3.GL873537 I 1 I 1 s mm10.chr11 22091860 39 - 122082543 gttgttgact--agtatttcattatattgatagatgatatt i mm10.chr11 C 0 C 0 s canFam3.chr9 21443971 32 + 61074082 -------aaa--aatattacattgtatgaataaagtacatg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 439145 39 - 852752 atggctaaat--aatattccattgtgtgtacatgccacatt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3009447 38 + 8555354 I e micMur3.chr16 35922682 86 - 65901067 I a score=1612060.000000 s hg38.chr17_GL383564v2_alt 126876 125 + 133151 --aaaaatatattcacctacttatgggcatttggattcttttgtg-tttctggctattatgaatgaagctgctatgagcattctcgtacaa---------tttttt--ttttttggtgaacatatg-ct-----ttgttttgg----------------------at s panTro5.chr17 16315983 125 + 83181570 --aaaaatatattcacctacttatgggcatttggattcttttgca-tttctggctattatgaataaagctgctatgagcattctcgtacaa---------tttttt--ttttttggtgaacatatg-ct-----ttgttttgg----------------------at i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220849 124 + 83442489 --aaaaatatattcacctacttatgggcatttggattcttttgca-tttctggctattatgaataaagctgctatgagcattctcgtacaa----------ttttt--ttttttggtgaacatatg-ct-----ttgttttgg----------------------at i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4056006 122 + 4267968 --aaaaatatattcacctacttatgggcatttggattcttttgcg-tttctggctattatgaataaagctgctatgagcattctcgtacaa------------ttt--ttttttggtgaacatatg-ct-----ttattttgg----------------------at i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036251 125 - 2193130 --aaaaatatattcatctgcttatgggcatttggattcttttgca-tttctggctattatcaataaagctgctatgaacattctcgtagaa---------tttttt--ttttttggtgaatatatg-ct-----ttattttgg----------------------at i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109795 128 - 77216781 --aaaaatatattcacctacttacgggcatttggattcttttgcg-tttctggctattatgaataaagctgctatgagcattctcgtagaa------atttttttt--ttttttagtgaacgtatg-tt-----ttattttgg----------------------at i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021445 128 - 80997621 --aaaaatatattcacctacttacgggcatttggattcttttgcg-tttctggctattatgaataaagctgctatgagcattctcgtagaa------atttttttt--ttttttagtgaacgtatg-tt-----ttattttgg----------------------at i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079158 128 + 10377808 --aaaaatatattcacctacttatgggcatttggattcttttgcg-tttctggctattatgaataaagctgctatgagcattctcgtagaa------ttttttttt--ttttttggtgaacgtatg-tt-----ttattttgg----------------------at i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964069 128 - 8458610 --aaaaatatattcacctacttgtgggcatttggattcttttgcg-tttctggctattatgaataaagctgctatgagcattcttgtagaa------ttttttttt--ttttttggtgaacatatg-tt-----ttattttgg----------------------at i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909276 128 + 75148670 --aaaaatatattcacctacttatgggcatttggattcttttgca-tttctggctgttatgaataaagctgctatgagcattctcgtagaa----tgttttttttc--ttttttggtgaacatatg-tt-----ttattttgg------------------------ i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149096 129 + 4244037 --aaaaatatattcacctacttatgggcatttggattcttttgcg-tttctggctattatgaataaagctgctatgagcattctcgtagaa-----attttttttt--tttttttgtgaacatacg-tt-----ttattttgg----------------------at i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172179 134 + 4569836 --aaaaacatattcacctacttatgggcatttggattcttttgca-tttctggctattatgaataaagctgctatgagcattctcatagaattttttttttttttc--ttttttggtgaacatatg-tt-----ttattttgg----------------------at i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128311 122 - 159171411 --aaaaatatatttgcctacttatgggcatttggattcttttgag-tttctgactgttatgaataaagctgctatgtgcattctcgtacaa------gtttttttt--------tgtgaacatatg-tt-----ttattttgg----------------------at i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838252 129 + 3513951 --aaaaatatattgacctacttctgggcatttggattc-tttgag-tttctgactattatgaataaagctgctatgtgcattattgtacaa------gtttttttttttgtgtgtgtgaacatatg-tt-----ttattttgg----------------------at i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1886938 127 + 1920343 --aaaaatatattcgcctacttatgggcatttggattcttttgag-tttctgactattatgaataaagctgctatgtgcattctcgtacaa------gtttttttt---ttgtgtgtgaacctatg-tt-----ttattttgg----------------------at i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003323 145 - 7032639 --aaaaatatattcgtctacttatgggcatttggattcttttgag-tttctgactattatgaataaagcttctatgtgcattcttatacaa------gtttttttt-------tggtgaacatatg-tt-----ttattttggttaaatacctagcaactaaaaaaa i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922768 125 - 65901067 --aaaaatacattcacctactcatgggcatttgggttgttttaagttttttggctattatgaataaagctgctatgaacattcacgtagaa------g----------tttttgtgtgaacatatg-ct-tcatttattttgg----------------------at i micMur3.chr16 I 86 C 0 s proCoq1.NW_012135969v1 3009485 124 + 8555354 --aaaaatacattcacctacttatgggcacttgggttgttttaag-tttttggctattatgaataaagttgctatgaacattcatgtacaa------g----------tttttgtgtgaacgtatg-tt-tcgtttattttgg----------------------at i proCoq1.NW_012135969v1 I 38 C 0 s otoGar3.GL873537 22831219 126 + 28711273 --aaaaatacattcaccaactgaggggcatttgggttgttttaag-tttttgactattatgaataaatctgctataaacattcacatacag------g-------t--tttttgtgtaaatatatgttt-tcacttattttag----------------------at i otoGar3.GL873537 I 1 C 0 s mm10.chr11 22091899 122 - 122082543 --aaaaatccatccattaaatgaagggcacttgcatggcttataa-tttttcatcattgagaataaagctttcagcaacattaatgtgcaa------g----------ttttcatagaaacatatt-tt--cattcatttcgg----------------------a- i mm10.chr11 C 0 C 0 s canFam3.chr9 21444003 122 + 61074082 --aaaaa---gttcatatactgatgggaatttgggttgtctccag-tttttggctattatgaagaaaggtgctataaacattcatgtataa------a----------tttatgtgtggacttatg-ttttcatttattttgg----------------------at i canFam3.chr9 C 0 I 201 s dasNov3.JH570468 439184 127 - 852752 ttgtttatccattgactggttgatagacacttgggttgcttctat-cttttggcagttgtgaataatgatgctatgaacactggtgtgcaa------a----------tatctgttcaactcgatg-ctttcaattcctttgg----------------------gt i dasNov3.JH570468 C 0 C 0 a score=571353.000000 s hg38.chr17_GL383564v2_alt 127001 46 + 133151 aaat-acttagcaattggatggct-gtttaaatggtaagtgaatgctt s panTro5.chr17 16316108 46 + 83181570 aaat-acttagcaattggatggct-gtttaaatggtaagtgaatgctt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16220973 46 + 83442489 aaat-acttagcaattggatggct-gtttaaatggtaagtgaatgctt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4056128 46 + 4267968 aaat-accttgcaattggatggct-gtttaaatggtaagtgaatgctt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036376 46 - 2193130 aaat-acctagcaattggatggct-gtttaaatggtaagtgaatgctt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109923 46 - 77216781 aaat-atgtagcaattggatggct-gtttaaatggtaagtgattgctt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021573 46 - 80997621 aaat-atgtagcaattggatggct-gtttaaatggtaagtgattgctt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079286 46 + 10377808 aaat-atgcagcaattggatggct-gtttaaatggtaagtgattgctt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964197 46 - 8458610 aaat-atgtagcaattggatggct-gtttaaatggtaagtgattgctt i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909404 44 + 75148670 --at-acttagcaattggatggct-gtttaaatggtaagtgattgctt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149225 46 + 4244037 aaat-atgtagcaattggatggct-gtttaaatggtaagtgattgctt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172313 46 + 4569836 aaat-acctagcaattggatggct-gtttaaatggtaagtgattgctt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128433 45 - 159171411 aaat-acctagcaactagagggct-gtttaaat-gtgagtgaatgctt i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838381 45 + 3513951 aaat-acctagcaactagagggct-gtttaaat-gtgagtgaatgctt i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1887065 45 + 1920343 aaat-acctagcaactagagggct-gtttaaat-gtgagtgaatgctt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003468 45 - 7032639 aaat-acctagcaactagagggct-gtttaaat-gtgagtgaatgctt i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922893 46 - 65901067 aaat-gcataggagttagattgct-gggcaaatggtcagtgactattt i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3009609 46 + 8555354 aaat-gcctaggagttagattgct-gtgcaaatggtcagtgaatgttt i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22831345 45 + 28711273 caat-gcctaggagtaggactgct-gggcaaat-gtaagtgaacgttt i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22092021 46 - 122082543 aaat-acataggaatgatctttct-agggaaatggcaattggatgctt i mm10.chr11 C 0 I 41 s canFam3.chr9 21444326 46 + 61074082 aaat-acttaggtattggattgca-agataagtagtgtgagaatattt i canFam3.chr9 I 201 C 0 s dasNov3.JH570468 439311 48 - 852752 atataacctggtagtggaattgccaggtcatatggtacttccctattt i dasNov3.JH570468 C 0 C 0 a score=2439677.000000 s hg38.chr17_GL383564v2_alt 127047 175 + 133151 aaccttatgtgaaa----ctgcc-gagttgttttgcaaag---tggccacagcattttgtattccaaccagcaatgtctgagagttccagtg--tctatgtccttggtaacacttaatattatcagtctttttatttctagccattccagcaggtgtatagtggtagctcattgt-gttttca--tt----------t s panTro5.chr17 16316154 175 + 83181570 aaccttatgtgaaa----ctgcc-gagttgttttgcaaag---tggccacagcattttgtattccaaccagcaatgtctgagagttccagtg--tctatgtccttggtaacacttaatattatcagtctttttatttctagccattccaacaggtgtatagtggtagctcattgt-gttttca--tt----------t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16221019 175 + 83442489 aaccttatgtgaaa----ctgcc-gagttgttttgcaaag---tggccacagcattttgtattccaaccagcaatgtctgagagttccagtg--tctatgtccttggtaacacttaatattatcagtctttttatttctagccattccaacaggtgtatagtggtagctcattgt-gttttca--tt----------t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4056174 175 + 4267968 aaccttatgtgaaa----ctgcc-gagttgttttgcaaag---tggccacagcattttgtattccaaccagcaatgtctgagagttccagtg--tctatgtccttggtaacacttaatattatcagtctttttatttctagccattccaacaggtgtatagtggtagctcattgt-gttttca--tt----------t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036422 169 - 2193130 aaccttacatgaaa----ctgcc-aagttgttttgcaaag---tggccacagcattttgtattccaaccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcagtctttttat------acattccaacaggtgtttagtggtagctcattat-gttttca--tt----------t i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30109969 176 - 77216781 aaccttatatgaaa----ctgcc-cagttgttttgcaaag---tggccacagcattttgtattccagccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcagtctttttatttctagccgttccaacaggtatatagtggtaggtcattgt-gttttca-ttt----------T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021619 176 - 80997621 aaccttatatgaaa----ctgcc-cagttgttttgcaaag---tggccacagcattttgtattccagccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcagtctttttatttctagccgttccaacaggtatatagtggtaggtcattgt-gttttca-ttt----------T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079332 176 + 10377808 aaccttatatgaaa----ctgcc-cagttgttttgcaaag---tggccacagcattttgtattccagccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcaatctttttatttctagccgttccaacaggtatatagtggtaggtcattgt-gttttca-ttt----------T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964243 176 - 8458610 aaccttatatgaaa----ctgcc-cagttgttttgcaaag---tggccacagcattttgtattccagccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcagcctttttatttctagccgttccaacaggtatatagtggtaggtcattgt-gttttca-ttt----------T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909448 172 + 75148670 aaccttatatgaaa----ctgcc-gagttgttttgcaaag---tggccacagtattttgtatttcagccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcagtctttttatttctagccattccaacaggtatatagtggtaggtcattgt-gttttca--------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149271 176 + 4244037 aaccttatatgaaa----ctgcc-cagttgttttgcaaag---tggccacagcattttgtattccagccagcaatgtctgagagttccagtg--tctatgtccttgctaacacttaatattatcagtctttttatttctagccgttccaacaggtatatagtggtaggtcattgt-gttttca-ttt----------T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172359 177 + 4569836 aaccttatatgaaa----ctgcc-gagttgttttgcaaag---tggccacagcattttgtattccagccagcaatgtccgagagttccagtg--tctatgtccttgctaacacttaatattatcagtctttttatttctagccattccaacaggtatatagtggtaggtcattgt-gttttCTTTTT----------T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128478 176 - 159171411 aatgacatatgaaa----ctgcc-aggtcattttgcaaag---tggccgcagcattttgtattccaaccagcaatgtctgagagttccagtgtctctatgtccttgctaacatttaatattatcagtctttttatttctagccattccagcaggtgtatagtggtagctcatttt-gttttca---t----------t i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838426 176 + 3513951 aatgttatatgaaa----ctgcc-gagttgttttgcaaag---tggccgcagcattttgtagtccaaccagcaatatctgagagttccagtgtctctgtgtccttgctgacacttaatattctcagtctttttatttctagccattccagcaggtgtatagtggtagctcatttt-gttttca---t----------t i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1887110 176 + 1920343 aatgttgcatgaaa----ctgcc-gagttgttttgcaaag---tggctgcagcgttttgtattccaaccagcaacgtccgagagttccagtgtctctgcgtccttgctaacacttaatattatcagtctttttacttctagccattccagcaggtgtatagtggtagctcatttt-gttttca---t----------t i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003513 176 - 7032639 aatgttatgtgaaa----ctgcc-gagttgttttgcaaag---tggccgcagcattttgtactccaaccagcaatgtctgagagttccagtgtctctacgtccttgctaacacttaatattatcagtttttttatttctagccattccggcaggtgtatagtggtagctcatttt-gttttcg---t----------t i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35922939 182 - 65901067 aactttaaaagaaa----ctaccaaaatcattttgccaag---tggctgtaccattttgtatttcaaccagcaatgtctgacagttgcaa-ggctccatgtctttgctaacacttggtatcatcaacctttttattcctagccattctagcaggtgtatagtagtagctcattgc-gttttaa--tt-----tTTTTA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3009655 186 + 8555354 aaatttaaaagaaa----ctacc-aaaccattttgcaaag---tggctgtaccattttgtatttcaaccagcaatgtccgacagttgcaatgtctccatgtccttgctaacacttggtatcgtcagcctttttactcctagccattctagcaggtgtacagtagcagctcattgt-gttttca--tt-tttgttttgt i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22831390 186 + 28711273 aactttttaagaaa----ctacc-aaattgttgtgcaaag---tggctgtgccattttgaatctccaccagcaatgtctgatagtcccaatgtctccat-tccttgctaacacttggtattgtcagcctttttatttctagccattctagaagcgttatagtagtagcttattgt-gttttca--tttTTTGTTTTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21444372 184 + 61074082 aactttatattaaaaaacctacc-caactgttttgcaacagttttgccatatcattttgtgttcccaccagcaatgtctgagagtcccagttgctccatgtccttactaacactagatattgtcaatctttttatttttagcttttctagcaactatatagtggtggcttattgt-gtttact--tt----------T i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 439359 172 - 852752 aactttctgaggaa----atgcc-aaactgtcttccacag---cagctgtaccattttacattcccaccagcaatgaatgtttacttc------tccacaactgctccaactcttgtagttttccatttttaaaatggtagtcattctagtgggtgtgaaatgatatcttattgtagttttca--tt----------t i dasNov3.JH570468 C 0 I 9224 e mm10.chr11 22092067 41 - 122082543 I a score=1993874.000000 s hg38.chr17_GL383564v2_alt 127222 144 + 133151 TTTTCTTTCATTTATGAACCCAGCAGTATTATTAATGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCTTGGTTCAGTTTCGGACTCT-ACTATTTGAGCCA-TTTTCACTCTGGCTGGAACTGGCTTCCTAGGAACTGGC s panTro5.chr17 16316329 144 + 83181570 TTTTCTTTCATTTATGAACCCAGCAGTATTATTAATGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCTTGGTTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCACTCTGGCTGGAACTGGCTTCCTAGGAACTGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16221194 144 + 83442489 TTTTCTTTCATTTATGAACCCAGCAGTATTATTAATGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCTTGGTTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCACTCTGGCTGGAACTGGCTTCCTAGGAACTGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4056349 144 + 4267968 TTTTCTTTCATTTATGAACCCAGCAGTATTATTAATGTCTTCTTTTGGAGACAACCTGAGATTTGACTCTGCCCTGGTTCAGTTTCAGACTCT-ATTATTTGAGCCA-TTTTCACTCTGGCTGGAACTGGCCTCCTAGGAACTGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036591 144 - 2193130 TTTTCTTTCATTTATGAACCCAGCAGTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGTTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCACTCTGGCAGGAACTGGCATCTTAGGAACTGGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30110145 144 - 77216781 TTTTCTTTCATTTACGAACCCAGCAGTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGACCCA-TTTTCATTCTGGCTGGAATTGGCCTCCTAGGAACTGGT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021795 144 - 80997621 TTTTCTTTCATTTACGAACCCAGCAGTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGACCCA-TTTTCATTCTGGCTGGAATTGGCCTCCTAGGAACTGGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079508 144 + 10377808 TTTTCTTTCATTTACGAACCCAGCAGTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGACCCA-TTTTCATTCTGGCTGGAATTGGCCTCCTAGGAACTGGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964419 144 - 8458610 TTTTCTTTCATTTACGAACCCAGCAGTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCATTCTGGCTGGAATTGGCCTCCTAGGAACTGGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909620 138 + 75148670 ------ttcatttACGAACCCAGCAGTATTATTAGCATCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCATTCTGGCTGGAATTGGCCTCCTAGGAACTGGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149447 144 + 4244037 TTTTCTTTCATTTACGAACCCAGCAGTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCATTCTGGCTGGAATTGGCCTCCTAGGAACTGGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172536 144 + 4569836 TTTTCTTTCATTTACGAACCCAGCAGTATTATTAGCGTCTTCTTTTGGAGAGAACCTGAGATTTGACTCTGCCCTGGCTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCATTCTGGCTGGAAATGGCCTCCTAGGAACTGGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128654 143 - 159171411 ttttctttcatgaACAAACCAAGCACTATTATTAGTGTCTTC-TTTGGAGAGAACCTGAGATTCGACTCTGCCCTGGTTCAGTTTCAGACTCT-ACTATTTGAGCCA-TTTTCACTCTGACTGGAATTGGCCTCCTAGGATCTGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838602 143 + 3513951 ttttctttcatgaACCAACCAAGCACTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTCGACTCTGCCCTGGTTCAGTTTCAGAC-CT-ACTATTTGAGCCA-TTTTCATTCTGACTGCAATTGGCCTCCTAGGATCTGGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1887286 142 + 1920343 ttttctttcatgaACAAACCAAGCACTATTATTACTGTCTTCTTTTGGAGAGAACCTGAGATTCGACTCTGCCCCGGTTCAGTTTTAGA--CT-ACTATTTGAGCCA-TTTTCATTCTGACTGGAATTGGCCTCCTAAGATCTGGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003689 135 - 7032639 -----tttcatGAACAAACCAAGCACTATTATTAGTGTCTTCTTTTGGAGAGAACCTGAGATTCGA--CTGCCTCGGTTCAGTTTCAGA--CT-ACTATTTGAGCCA-TTTTCACTCTGACTGGAATTGGCCTCCTAGGATCTGGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35923121 141 - 65901067 TTTGTTTTCATTTACAAATCCAGCAGTATTAGTA-TGTCTTCTTTTGGAGAGAATTTAAGATTCAA--CTGCCCTGGTTTAGTTTGGGACTCT-ACTATTTAAATTG-TTTTTGCTCTGGCTGAAATCGGCCTCCTAGGAGCTGGC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3009841 141 + 8555354 tttgttttcattcacaaacccagcagtattagta-tgtcttcttttggagagaattcaagATTCAA--CTTCCCTGGTTCAGTTTGGGACTCT-ACTGTTGAAGCCG-TTTTTGCTCTGGCTAGAATTGGCCTCCTAGGAACTGAC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22831576 132 + 28711273 TCTGTTTTCATTTACAAACCCAGAAGTATTAGCA-TGTCTTCTTTTGGAGATAATTCTAGACTGAACTCTGTCCTGGTTCAGTTTCAGACTCT-ACTATTTAAGTCA-TTTTTGCTCTGGCTGGAACTGGCCTCC----------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22092108 120 - 122082543 -----------------------TGGTAGTAGTA-TGTCTTGCTTT-CAGAGGATATGAGATTCCGCT-TGCTCTGTTCTCATTTCAGACTCCAATTATTTCAGTTACTTTTTACTCTGGATATAGCTGGTCTCTTCAAAGGAGCC i mm10.chr11 I 41 C 0 s canFam3.chr9 21444556 144 + 61074082 CTTGGTTTCATTTAAAAACCCAGCAATATTTGTAATGTCTTACTTGGGAGACAATTCAAAATTTGAGTCTGCTTTGGTTCAGTTTCAAACTCT-ACTATTTAGGTCA-TTTTTGCTCTTGTTGGAATTGGCCTCTTAGGAGCTAGC i canFam3.chr9 C 0 I 212 e dasNov3.JH570468 439531 9224 - 852752 I a score=5074286.000000 s hg38.chr17_GL383564v2_alt 127366 339 + 133151 TCTTTAACCCCTAAGACAAAGCC--ACCGCCAAAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGTGAATCTGCACTGAGTAGTTGTGATTCAGAGCAGCTGATTATTCTATTGCGCACGGTCAT---------GCCTCCTGGATGCATGTGTGGC-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcactcaataaatgctaatcgtgtgcctccaatgtatcagctgctgctctggatgctgggtatgc-atctgtgaatagacaaggtccttgccctcatggtgcttatatgaggtcaaggg-g s panTro5.chr17 16316473 339 + 83181570 TCTTTAACCCCCAAGACAAAGCC--ACCGCCAAAGCAAGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGTGAATCTGCACTGAGTAGTTGTGATTCAGAGCACCTGATTATTCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATGTGTGGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcactcaataaatgctaatcgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatgc-atctgtgaatagacaaggtccttgccctcatggtgcttatatgaggtcaaggg-g i panTro5.chr17 C 0 C 0 s panPan2.chr17 16221338 339 + 83442489 TCTTTAACCCCCAAGACAAAGCC--ACCGCCAAAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGTGAATCTGCACTGAGTAGTTGTGATTCAGAGCACCTGATTATTCTATTGCTCATGGTCAT---------GCCTCCTGGTTGCATGTGTGGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcactcaataaatactaatcgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatgc-atctgtgaatagacaaggtccttgccctcatggtgcttatatgaggtcaaggg-g i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4056493 340 + 4267968 TCTTTAACCCCCAAGACAAAGCC--ACCGCCAAAGCAGCAG----C-TGC-----------CAATGGGACGCACTTGTCCAGAGACCAATGAATCTGCATTGAGTAGTTGTGATTCAGAGCAGCTGATTATTCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATGTGTGGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTGCCCCTTCTTAGCTACCCACAGAGGTTCTCatttattcactcaataaatgctaactgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatgc-atctgtgaatagacaaggtccttgccctcatggtgcttatatgaggtcaaggg-g i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2036735 336 - 2193130 TTTTTAACCCCCAAGACAAAGCC--ACAGCCAGAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGTGAGTCTGCATTGAATAGTTGTGATTCAGAG---CTGATTATTCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATGAGTGGA-GGTAGTGATT--TTTGAATTACTGATATAGGCTTG-CCCTTCTTAGCTATCTACAGAGGTTCTCatttattcactcaataaatgctaattgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatac-atctgtgaatagacaaggtccttgccctcatggtgcttatatgaggtcaaggg-g i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30110289 340 - 77216781 TCTTTAACCCCCAAGACAAAGCC--ACAACCAGAGCAGGAG----C-TGC-----------CAATGGGAAGCACCTGTCCAGAGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATCCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATAAGCAGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatac-atctgtgtatagacaaggtccttgccctcatggtgtttatatgaggtcaaggggg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28021939 340 - 80997621 TCTTTAACCCCCAAGACAAAGCC--ACAACCAGAGCAGGAG----C-TGC-----------CAATGGGAAGCACCTGTCCAGAGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATCCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATAAGCAGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatac-atctgtgtgtagacaaggtccttgccctcatggtgtttatatgaggtcaaggggg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079652 340 + 10377808 TCTTTAACCCCCAAGACAAAGCC--ACAACCAGAGCAGGAG----C-TGC-----------CAATGGGAAGCACCTGTCCAGAGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATCCTATTGCTCATGGTCGT---------GCCTCCTGGATGCATAAGCAGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCTTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatac-atctgtgtgtagacaaggtccttgccctcatggtgtttatatgaggtcaaggggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964563 340 - 8458610 TCTTTAACCCCCAAGACAAAGCC--ACAACCAGAGCAGGAG----C-TGC-----------CAATGGGAAGCACCTGTCCAGAGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATCCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATGAGCGGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattgtgtgcctccaatgtatcagctgcttctctgggtgctgggtatac-atctgtgtgtagacaaggtccttgccctcatggtgcttatatgaggtcaaggggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64909758 340 + 75148670 TCTTTAACTCCCAAGACAAAGCC--ACAACCAGAGCAGGAG----C-TGC-----------CAATGGGATGCACCTGTCCAGAGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATTCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATGAGCGGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatac-atctgtgtgtagacaaggtccttgccctcatggtgcttatatGAGGTCAAGGGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149591 340 + 4244037 TCTTTAACCCCCAAGACAAAGCC--ACAACCAGAGCAGCAG----C-TGC-----------CAATGGGAAGCACCTGTCCAGAGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATCCTATTGCTCATGGTCAT---------GCCTCCTGGATGCATGAGCGGA-GGTAGTGATT--TTTGAATTACTGATACAGGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattgtgtgcctccaatgtatcagctgctgctctgggtgctgggtatac-atctgtgtgtagacaaggtccttgccctcatggtgcttatatgaggtcaaggggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2172680 340 + 4569836 TCTTTAACCCccaagacaaagcc--acagccagagccggag----c-TGT-----------CAATGGGACGCACCTGTCCAGGGCCCAGAGAGTCTGCATTGAGTAGCTGTGATTCAGAGCAGCTGATTATTCTATTGCTAATGGTCAT---------GCCTCCTGGATGCATGAGCAGA-GGCAGTGATT--TTTGAATTACTGATACAAGCTTG-CCCTTCTTAGCTATCCACAGAGGTTCTCatttattcgtttaataaatactaattttgtgcctccaacgtatcagctgctgctctgggtgctgggtatac-atctgtgtgtagacaaggtccttgccctcatggtgcttatatgaggtcaaggggg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46128797 338 - 159171411 TCTTTAATCCCTAAGACAAAGCT--AA-ACCAGAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGTGAGTCTACATTGAGTAGCTGTGATTCAGAGCAGCTGATTATTCTATTGCTCATGGTTGG---------GCCTCCTGGATGCAGGAGTGGA-GGTAGTGATT--TTTGAATTACTTGTAAAGGCTTG-CCCTTCTTAGCTACCCACAGAGGTTCTCatttattcactcaataaatgttgattgtgtgcttccaatgtatcaactgctgctctgaatgctgggtgtac-atctgtgaatagacaaagtccttgccctcatggtgtttatatGAGGTCAAGGA-G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1838745 338 + 3513951 TCTTTAACCCCTAAGACAAAGCC--AC-ATCGGAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGCGAGTCCACGTTGAGTAGCTGTGATTCAGAGCAGCTGACTATTCTATTGCTCATGGTCGT---------GCCTCCTGGATGCATGAGTGGA-GGTAGTGATT--TCTGAATTATTGATAAAGGCTTG-CCCTTCTTAGCTACCCACAGAGGTTCTCatttattcactcaataaatgttgattgtgtgcttccaatgtatcaactgctgctctggctgctgggtatac-atctgtgaatagacaaagtccttgccctcatggtgtttatatgaggtcaaggg-g i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1887428 338 + 1920343 TCTTTAACCCCTAAGACAAAGCC--AC-ACCAGAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGTGACCAGCGAGTCTACATTGAGTAGCTGTGATTCAGAGCAGCTGATTATTCTACTGCTCATGGTCAT---------GCCTCCTGGGTGCATGAGTGGA-GGTAGTGATT--TTTGAATTACTGATAAAGGCTTG-CTCTTCTTAGCTACCCACAGAGGTTCTCatttattcactcaataaatattgattgtgtgcttccaatgtatcagctgctgctctggatgctgggtatac-atctgtgaatagacaaagtccttgccctcatggtgtttaTGTGAGGTCAAGAG-G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7003824 338 - 7032639 TCTTTAACCCCTAAGACAAAGCC--AC-ACCAGAGCAGGAG----C-TGC-----------CAATGGGACACACTTGTCCAGAGACCAGCGAGTCTACGTTGAGTAGCTGTGATTCAGAGCAGCTGATTATTCTATTGCTCATGGTCGT---------GCCTCCTGGATGCATGAGTGGA-GGTAGTGATT--TTTGAATTACTGATAAAGGCTTG-CCTTTCTTAGCTACCCACAGAGGTTCTCatttattcactcaataaatgttgattgtgtgcttccaatgtatcaactgctgctctggatgctgggtatac-atctgtgaatagacaaagtccttgccctcatggtgtttatatgaggtcaaggg-g i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35923262 340 - 65901067 TGTTGAA-CCCCAGGACAATGCC--ACAGCCAGAGCAGGAG----C-TGC-----------CAAGAGGACACACTTGCCCGGAGGCCAGCAGGTCTGCATCGAGTAGTTGTGATTCAGAGCATCTGATTACCCTATTGCTCATGGTCAT---------GTCTCCTGGATGCATGAGTGGA-GGTAGTGATTTCTTTGAATTGCTGATAAGGCGTTG-CCCTTCTTAGCCACCCACAGAGGTTCTCatttattcactcaataagtattaattgtgcacctcctaggtatccaacactgctctgggtgctgggtatac-atcagtgaacagacaaggtccttgccctcgaggtgcttaTGTGATGTCAAGGG-G i micMur3.chr16 C 0 I 1156 s proCoq1.NW_012135969v1 3009982 341 + 8555354 TCTTTAACCCCCAGGACAAAGCC--ACAGGCAGAGCAGGAG----C-TGC-----------CAAGAGGACACAATTGCCCAGAGGCCAGCAGGTTTGCATTGAGTAGTTGTGATTCAGAGCATCTGATTATCCTGTTGCTCATGGTCAT---------GTCTCCTGGATGCATGAGTGGA-GGCAGTGATTTCTGTGAATTGCTGACAAAGGGTTG-CCCTTCTTAGCTATCCATAGAGGTTCTCatttattcactcaataaatattaattgtgcacctcctaggtatccaacactgctctgggtgctgggtatac-ataggtgaaaagacaaggtccttgccctcatggtgcttaTGTGATGTCAAGGG-G i proCoq1.NW_012135969v1 C 0 I 638 s otoGar3.GL873537 22831708 329 + 28711273 --TTTAACTCCCAGTACAAACCC--ACGGCCAAAGCAGGAG----C-TGC-----------CAGTGGGGCACACTTGCCCAGAGGCCAGCAGGTCTGCAGGGAGTCGCTGTCATTCAGAATAGCTGATTATTCAATTGCTCATGGTTGT---------GTGTCCTGGATGCATGAGTGGA-GGTGGTGTTTTCTCTGAATTGCTGATGAAGGGCTG-CCCTTCTTAGGTATCCACAGAGGTTCTCatttattcactcagtaagtattaattgtctatcttctaagtatcgaacactgctctgggtgcctcgtatgt-gtcagtga----acaaagtccttgtcgtcatggtgcttacgtGATGTC------- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22092228 351 - 122082543 TTTTTAATTACCAGAACAAACCCTGAAGAACAAACCTTGAGCATCC-TGCCAAGGATGAGACAATGGGACAAGCCTGCCAACAGACCAAT-------TGCTGTGTGTCTGTGATTCAGAGCAGCTGATCAATCCATTGCTCATGGCCAT---------GTCATCCGGATGCATGAGTGGA-GGTAGTGATTTCTTCGAGTTCCCAACAAAGG-TTG-CCCTTCTTAGCTATTCATATAGGTCCTCattagtccattcgataaatagtaattgcatgctgcctatgtatcagtcttgactctgggtaccaggtatgcaagcactgaatagactaagtccttgaccttatggcgcctggatggtgctgagag-g i mm10.chr11 C 0 C 0 s canFam3.chr9 21444912 343 + 61074082 CTTTTAACTCCCAGGACAAAACC--ACAGCCAGAACATGAA----CATGC-----------TAATAGGACAAAATTGCCAAGAGACTGATAGGTCTGCATTGAGTAGTTGTAATTCAGAGTAGTTGATTCTTCTATTACTCATGGTCATGGTTTCATGGTTTCCCAGATGGGTGAGGGCAGGGTAGTGATTTCTTTGAATTACTGATAAAGAGATG-CCCTTTTTAA--------GGGGGTCCTCattctttca-tcaataaatattaattgtgaactgcctatatatcaaacattgctctgggtactgggtatgt-atcagtgaatacacaaaatccttgccctcatggtacttatataatgttaaggg-a i canFam3.chr9 I 212 C 0 e dasNov3.JH570468 439531 9224 - 852752 I a score=1837401.000000 s hg38.chr17_GL383564v2_alt 127705 169 + 133151 tgataagagccataaagaagaataaagtagaaatgggctacatagttgaatgacctgcct-tttcatttagcagggaaggattcttcgaagagatgacattccagcaCAATGGATG-----------AGTTTCTTGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T s panTro5.chr17 16316812 169 + 83181570 tgataagagccataaagaagaataaagtagaaatgggctacatagttgaatgacctgcct-tttcatttagcagggaaggattcttcgaagagatgacattccagcaCAATGGATG-----------AGTTTCTTGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i panTro5.chr17 C 0 C 0 s panPan2.chr17 16221677 169 + 83442489 tgataagagccataaagaagaataaagtagaaatgggctacatagttgaatgacctgcct-tttcatttagcagggaaggattcttcgaagagatgacattccagcaCAATGGATG-----------AGTTTCTTGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4056833 169 + 4267968 tgataagagctataaagaagaataaagtagaaatgggctacaaagttgaatgacctgcct-tttcatttagtagggaaggattcttcgaagagatgacattccagcacaatggatg-----------agtTTCTTGGCTGAG------AGAGTTTATAAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037071 169 - 2193130 tgaaaagagctataaagaagaataaagtagaaatgggctacatagttgaatgacctgcct-tttcatttagcagggaaggattcttcgaagagatgacattccagcacaatggatg-----------agtTTCTTGGCTGAG------AGAGTTTGTGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30110629 168 - 77216781 tgataagagctgtaaAGAAGAATAAAGTAGAAATGGGCTACATCATTGAATGACCT-CCT-TTTCATTTAGCAGGGAAGGATTCTTCGAACAGACAACATTGCAGCACAATGGATG-----------GGTTTCTGGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------AGCG--------G-------A----------CTTCCA-------T i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28022279 168 - 80997621 tgataagagctgtaaagaagaataaagtagaaATGGGCTACATCATTGAATGACCT-CCT-TTTCATTTAGCAGGGAAGGATTCTTCGAACAGACGACATTGCAGCAAAATGGATG-----------GGTTTCTGGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------AGCG--------G-------A----------CTTCCA-------T i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2079992 168 + 10377808 tgataagagctgtaaagaagaataaagtagaaATGGGCTACATCATTGAATGACCT-CCT-TTTCATTTAGCAGGGAAGGATTCTTCGAACAGACAACATTGCAGCACAATGGATG-----------GGTTTCTGGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1964903 168 - 8458610 tgataagagctgtaaAGAAGAATAAAGTAGAAATGGGCTACATCGTTGAATGACCT-CCT-TTTCATTTAGCAGGGAAGGATTCTTCGAACAGACGACATTGCAGCAAAATGGATG-----------GGTTTCTGGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64910098 169 + 75148670 TGATAAGAGCTGTAAAGAAGAATAAAGTAGAAATGGGCTACATAGTTGAACGACCTGCCT-TTTCATTTAGCAGGGAAGGATTCTTCGAACAGATGACATTGCAGCACAATGGATG-----------GGTTTCTTGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2149931 168 + 4244037 tgataagagctgtaaagaagaataaagtagaaATGGGCTACATCGTTGAATGACCT-CCT-TTTCATTTAGCAGGGAAGGATTCTTCGAACAGATGACATTGCAGCACAATGGATG-----------GGTTTCTGGGCTGAG------AAAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2173020 169 + 4569836 tgataagagctataaagaagaataaagtagaaATGGGCTACATAGTTGAATGACCTGCCT-TTTCATTTAGCAGGGAAGGATTCTTCAAACAGCCGACATTGCAGCACAATGGATG-----------GGTTTCTTGGCTGAG------AGAGTTTATGAGAAATTTGTTTGTGG----------------GGCG--------G-------A----------CTTCCA-------T i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129135 166 - 159171411 TGATAAGAGCTATA---AAGAATAAAGTAGAAATGGGCTACATAGTTGAATGACCTGCCT-CTTCATTTAGCAGGGAAGGATTCTTCGAAGAGATGACATTCTGGCACAATAGATG-----------AGTTTCTTGACTGAG------AGAGTTTATAAGAAATTGGTTTGTGT----------------GGGA--------G-------A----------CTTCCA-------T i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839083 192 + 3513951 tgataagagctataaagaagaataaagtagaaatgggatacatagttgaatgaactgcct-cttcatttagcagggaaggattcttcgaagagatgacattctggcaCAATAGATG-----------AGTTTCTTGACTGAG------AGAGTTAATAAGAAATTtgtttgtgtgtgtgtgtgtgtgtgGGGGA--------GGGGCGGAA----------CTTGCA-------T i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1887766 166 + 1920343 TGATAAGAACTATA---AAGAATAAAGTACAAATGGGCTATACAGTTGAATGAACTGCCT-CTTCATTTAGCAGGGAACGATTCTTCAAAGAGATGACATTCTGGCACAATAGTTG-----------AGTTTCTTGACAAAG------AGAGTTTATAAGAAATTTATTTGTAG----------------GGGG--------G-------A----------CTTCCA-------T i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004162 175 - 7032639 tgataagagctataaagaagagtaaagtagaaatgggctacatagttgaatgaactgcct-cctcatttagcagggaaggattcttcgaagagatgacattCTGGCACAATAGATG-----------AGTTTCTTGACTGAG------AGAGTTTATAAGAAATTTCTTTGTG-----------------GGGA--------GGGGGGGAG----------CTTCCA-------T i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22832037 190 + 28711273 --CTAGGAACCATGAAGAAGAGGAGAGAAGTCCTGGGCTACATAATTGCAAGAGCAGCTA-TTTCATTTAGTAGGGAAGCATCCTTTGAGGAGATAACATTCTGGAGTAACAGATGATGATACA-TAAGTTTCTTGGCTGAA------GGAATTTATGAGAAATGTG-TTGAGG----------------GGAG--------G-------AGGATCATTTCCTTCTG---GAATT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22092579 182 - 122082543 agaGCAGTGCTTTAAAGATGAGTCACGTAGGAATGGCCCACACAGTTAGAAGAGCTGCCA-CTTCATTTAGCTGGGGAGGGTTCTGGGAGGAGATAACACCACAGTATAAAGGAC------------AATGCCCTGTCAGCTCTCATCAGAGTTTATGAGGGCTCTCCTTTGAG----------------GGAGTTATCAACA-------A----------CTACAA-------C i mm10.chr11 C 0 C 0 s canFam3.chr9 21445255 181 + 61074082 -gatgagacCTTT----AAGAATAAAGTAGAAATGGGTTCGATTGTTAAAAGATCTGCTTATTCCATGTAACAAGGAAGGATTCTTTG---AGATGACATTCCAGCATAACAGATGATGCCATGTTAAATTTCTCAGCTGAG------AGAATTTATAAGGGATTTG--TGGGA----------------GGAA--------G----GCCA----------TCTCCATGTGAATT i canFam3.chr9 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 439531 9224 - 852752 I a score=2042226.000000 s hg38.chr17_GL383564v2_alt 127874 185 + 133151 TC-ACTGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCA--TCTCCT---CTGTGTTTG-CCTCTGCAGGCCTGTCCAAAAGT------------CTTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCCT--CCAT-----TTTCAACT---------------------------ACCATGACCCGT--------------------CTCTCA s panTro5.chr17 16316981 185 + 83181570 TC-ACTGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCA--GCTCCT---CTGTGTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAACT---------------------------ACCATGATCCGT--------------------CTCTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16221846 185 + 83442489 TC-ACTGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCA--GCTCCT---CTGTGTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAACT---------------------------ACCATGATCCGT--------------------CTCTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057002 185 + 4267968 TC-ACTGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAACA----------GAAGGGTCTCAGCA--GCTCCT---CTGTGTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAACT---------------------------ACCATGACCCGT--------------------CTCTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037240 184 - 2193130 TC-TCTGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCA--GCTCCC---CTGTGTTTC-CCTCTGCAGGCCTGTCC-AAAGT------------CTTCTTTGC--------CCACTCCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTCTTCCTAATCTT--CCAT-----TTCCAACC---------------------------ACCATGACCCGT--------------------CTCTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30110797 185 - 77216781 TC-ACCGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTGCT---CTGCCTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGCC---------------------------ACCACGACCCAT--------------------CTCTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28022447 185 - 80997621 TC-ACCGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTGCT---CTGCCTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGCC---------------------------ACCACGACCCAT--------------------CTCTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2080160 185 + 10377808 TC-ACCACTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTGCT---CTGCCTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGCC---------------------------ACCACGACCCAT--------------------CTCTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1965071 185 - 8458610 TC-ACCGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTGCT---CTGCCTTTC-CCTCCGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGACACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGCC---------------------------ACCACGACCCAT--------------------CTCTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64910267 185 + 75148670 TC-ACCACTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTGCT---CTGCCTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGCC---------------------------ACCACGACCCAT--------------------CTCTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2150099 185 + 4244037 TC-ACCGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTGCT---CTGCCTTTC-CCTCCGCAGGCCTGTCCGAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGTC---------------------------ACCACGACCCAT--------------------CTCTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2173189 185 + 4569836 TC-ACCGCTGGTTTAGCTGAGGAAGAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCA--GCTGCT---CCGCCTTTC-CCTCTGCAGGCCTGTCCAAAAGT------------CCTCTTTGC--------CCACTGCTTGAGAGCCACATTTAAAAGAATGGCACTCCCTGTTCCTAATCTT--CCAT-----TTTCAGCC---------------------------ACCACGACCCAT--------------------CTCTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129301 180 - 159171411 TC-ATGGCTGGTTTAGCT------GAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTCCT---CTGCCTTTCCCCTCTTCAGGGCTGTCTTAAAGT------------TCTCTTTGC--------CCACTGATTGAGAGCCACGTTTAAAAGAATGGCACTGTCTGTTCCTAATCTT--CTGT-----TTTCAACC---------------------------ACCACAACCCAT--------------------CTTTCA i calJac3.chr5 C 0 I 3 s saiBol1.JH378271 1839275 164 + 3513951 TC-ACAGCTGGTTTAGCT------GAGGAG-TTAATGGA----------------------AAAGA----------GAAGGGTCTCAGCA--GCTCCT---CTGCCTTTCCCCTCTTCAGGGCTGTC-TAAAGT------------CCCCTTT-----------------------GCCACATTTAAAAGAATGGCACTGCCTGTTCTTAATCTT--CTGT-----TTTCAACC---------------------------ACCGCAACCCAT--------------------CTCTCA i saiBol1.JH378271 C 0 I 3 s cebCap1.NW_016107730v1 1887932 180 + 1920343 TC-ACAGCTGGTTTAGCT------GAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGTG--GCTCCT---CTGCCTTTCCCCTCTTCAGGGCTGTCTAAAAGT------------CCTCTTTGC--------CCACTGATTGAGAGCCGCATTTAAAAGAATGGCACTGCCTGTTCTTAACCTT--CTGT-----TTTCAACC---------------------------ACCACAGCCCAT--------------------CTCTCA i cebCap1.NW_016107730v1 C 0 I 3 s aotNan1.NW_018502359v1 7004337 180 - 7032639 TC-ACGGCTAGTTTAGCT------GAGAAG-TGAATGGA----------------------AAAGA----------GAAGGGTCTCAGCG--GCTCCT---CTGCCTTTCTCCTCTTCAGGACTGTCTAAAAGT------------CCTCTTTGC--------CCACTGACTGAGAGCCACATTTAAAAGAATGGCACTGCCTGTTCTTAATCTT--CTGT-----TTTCAACC---------------------------ACCACAGCCCAT--------------------CTCTCA i aotNan1.NW_018502359v1 C 0 I 21 s otoGar3.GL873537 22832227 215 + 28711273 TC-CTTGCTGGCTTCACTAAAGAGGAGATG-TGGATGGGGG---GGGGGGCTTGGAAGGGTAAAGA----------TCAGGTTCTTGGGG--GATCTT-------------CCT------GTTGGTCCAAAAGT------------CTTTTTTGC--------CTG-TGCTTGAGAACCACATTGAAAAGAATGGTACCTGTTGATCCTAATCTT--CCAT-----TTTCAATCTAAGATTTGAAGGTTCTGCCTCTTCAAAGCCTTTCCTGT--------------------TGCTCC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22092761 200 - 122082543 TCTATCACTAGCTTAGCCGAGGAAGGGAAG-CAGAGGGA----------------------GAGGATCTATGAGTGATAGGGAGTTGATG--GGCTCT---CCACTGCTC-CCTCTTCGAGGCTGTTGGAAGGC------------ATCCCTTCC--------CCATAGCTGAGAAGGCATATCTCAAAGAATGGTGGTCC---TTTCTAGTCACAACCATGGGCACTTCTTCT---------------------------GCCTTAAAACGT--------------------CTCCTA i mm10.chr11 C 0 C 0 s canFam3.chr9 21445436 181 + 61074082 TC-ATTGCTGGCTTAGCTGAGGAAGAGAAA------GGT----------------------GGAGA----------TTAGGATCTTGGGA--GCTCCTTCTCTGCCTTAC-CTTTTGCAAAGTTGTCCAAAAGT------------CTTCTTTTC--------CAACTGCCTGAGAGCTACATCTC-AATAATGACActctttgtttctaatctt--ccac-----tttcaacc---------------------------acta-gatctat--------------------tgattc i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 448755 251 - 852752 TC-ATTGCTGGCTTAGTTGAGGAAAGGAAGGTGGATAGAGAGTTGGGGAGCTGGTATAGATGGGGA----------ACAGGATCTTGGGGTTTCTTCT---CTGCCTTACCCTTCTGCAGAGCTATCTCAAAGTGAGTGCCTACTGTTCCTTTGCTGCCTTCTCTATTGCCTGAGAGCCACACCTCAAAGGATGCCACTCCCTTTTCCTACTCTC--CCAC-----TTTCAACC---------------------------TCTAAGTCTTATAGATTCTAcctctttaaaacctctca i dasNov3.JH570468 I 9224 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I a score=55349.000000 s hg38.chr17_GL383564v2_alt 128059 11 + 133151 ---------GGTCTCT---GAAC- s panTro5.chr17 16317166 11 + 83181570 ---------GGTCTCT---GAAC- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222031 11 + 83442489 ---------GGTCTCT---GAAC- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057187 11 + 4267968 ---------GGTCTCT---GAAC- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037424 11 - 2193130 ---------GGTCTCT---GAAC- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30110982 11 - 77216781 ---------GGTCTCC---GAAC- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28022632 11 - 80997621 ---------GGTCTCC---GAAC- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2080345 11 + 10377808 ---------GGTCTCC---GAAC- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1965256 11 - 8458610 ---------GGTCTCC---GAAC- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64910452 11 + 75148670 ---------GGTCTCC---GAAC- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2150284 11 + 4244037 ---------GGTCTCC---GAAC- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2173374 11 + 4569836 ---------GGTCTCC---GAAC- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129484 11 - 159171411 ---------TGCTTCA---GCCC- i calJac3.chr5 I 3 I 7 s saiBol1.JH378271 1839442 11 + 3513951 ---------TGCTTCA---GCCC- i saiBol1.JH378271 I 3 I 7 s cebCap1.NW_016107730v1 1888115 11 + 1920343 ---------TGCTTCA---GCCC- i cebCap1.NW_016107730v1 I 3 I 7 s otoGar3.GL873537 22832442 11 + 28711273 ---------AGCCCCA---AGGT- i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22092961 11 - 122082543 ---------CTGCTCT---AACC- i mm10.chr11 C 0 I 7 s canFam3.chr9 21445617 14 + 61074082 ---------tgcctctttagaac- i canFam3.chr9 C 0 I 27 s dasNov3.JH570468 449006 21 - 852752 gatcacttgagctcca---agaca i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e aotNan1.NW_018502359v1 7004517 21 - 7032639 I a score=2173252.000000 s hg38.chr17_GL383564v2_alt 128070 177 + 133151 CTGCCCAATTCAGGTTGTTGCCATGAAACTTctaagt-----gattgccacagacccctaatggtctccctgccttcagacttgccctcaacc--tcccttctccacatccagaga----gaggggacacatccttctgaaagggcaaccctgatcaagttactctcctgcttaaacc-c-------tcattatca s panTro5.chr17 16317177 177 + 83181570 CTGcctagttcaggttgttgccatgaaacttctaagt-----gattgccacagacccctagtggtctccctgccttcagacttgccctcaccc--tcccttctccacatccagaga----gaggggacacatccttctgaaagggcaaccctgatcaagttactctcctgcttaaacc-c-------tcattatca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222042 177 + 83442489 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctaagt-----gattgccacagacccctagtggtctccctgccttcagacttgccctcaccc--tcccttctccacatccagaga----gaggggacacatccttctgaaagggcaaccctgatcaagttactctcctgcttaaacc-c-------tcattatca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057198 177 + 4267968 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctaagt-----gattgccacagacccctaatggtctccctgccttcagacttgccctcaccc--tcccttctccacatccagaga----gaggggacacatccttctgaaagggcaaccctgatcaagttactctcctgcttaaacc-c-------tcattatca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037435 177 - 2193130 CTGCCCAGTTCAGGCTGTTGCCATGAAACTTctgagt-----aattgccacagacccctaatggtctcctttccttcagacttgccctcaccc--tcccttctccacatccagaga----gagggcacacacccttccgaaagggctaccctgatcaagttactcccctgcttaaacc-c-------tcattatca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30110993 177 - 77216781 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctgagt-----aactgccacagacccctaatggtctgcctgccttcagacttgccctcaccc--tctcttctccacctccagaga----gagggcacacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28022643 177 - 80997621 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctgagt-----aactgccacagacccctaatggtctgcctgccttcagacttgccctcaccc--tctcttctccacctccagaga----gagggcacacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2080356 177 + 10377808 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctgagt-----aactgccacagacccctaatggtctgcctgccttcagacttgccctcaccc--tcccttctccacctccagaga----gagggcacacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1965267 177 - 8458610 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctgagt-----aactgccacagacccctaatggtctgcctgccttcagacttgccctcaccc--tcccttctccacctccagaga----gagggcacacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64910463 175 + 75148670 CTACCTAGTTCAGGTTGTTGCCATGAAACTTctgagt-----aactgccacagacccctaatggtctgcttgccttcagacttgccctcaccc--tctcttctccacatccagaga----gaggg--cacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2150295 177 + 4244037 CTGCCCAGTTCAGGTTGTTGCCATGAAACTTctgagt-----aactgccacagacccctaatggtctgcctgccttcagacttgccctcaccc--tcccttctccacctccagaga----gagggcacacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2173385 177 + 4569836 CTGCCCAGTTCAGGTTGTTGCCATAAAACTTctgagt-----aactgccacagacccctaattgtctgcctgccttcagacttgccctcaccc--tcccttctccacatccagaga----gaggacacacatctttctgaaagggcaaccccaatcaagttactcccctgcttaaacc-c-------ttattatca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129502 174 - 159171411 CTGCCCAGTTCAGGTTGTTGTCATGAGGCTTctgggt-----aattgccacagacccctaatggtctccctgtcttcagtctttccctcaccc--tccctt---cacatccaaaga----gagggcacacatccttctgaaagggcaatcccaatcaagttactcccctgcttaaacc-c-------tcattatga i calJac3.chr5 I 7 C 0 s saiBol1.JH378271 1839460 179 + 3513951 CTGCCCAGTTCAGGTTGTTGTCATGAAGCTTctgggt-----aattaccacagaccccgaatagtctccctgccttcagtcttgccctcaccc--tcccttctccacatccagaga--gcgagagcacacatccttctgaaagagcaaccccaatcaagttactccctggcttaaacc-c-------tcattatga i saiBol1.JH378271 I 7 C 0 s cebCap1.NW_016107730v1 1888133 181 + 1920343 CTGCCCAGTTCAGGTTGTTGTCATGAAGCTTctgggt-----agttgccacagacccctaatggtctccctgccttcagccttgccctcaccc--tccgttctccacatccagagagagagagagcacacatccttctgaaagggcaaccccagtcaagttactcccctgcttaaacc-c-------tcattatga i cebCap1.NW_016107730v1 I 7 C 0 s aotNan1.NW_018502359v1 7004538 177 - 7032639 CTGCCCAGTTCAGGTTGTTGTCATGAAGCTTctgggt-----aattgccacagacccctaatggtctccctgccttcagtcttgccctcatcc--tcccttctccacatccagaga----gagagcacacgtccttctgaaagggcaaccccaatcaggttactcccctgcttaaacc-c-------tcattatga i aotNan1.NW_018502359v1 I 21 C 0 s otoGar3.GL873537 22832454 172 + 28711273 CTGCCCAGTTCAGGTTGTCTCCATGAAGCTT-TGGAT-----AATTTACCCAGAGCCCCAGtgatctccctgcctccagacttgcccttggcc--tcccttctccacagccagaga----ga-----------ctttccaaagggaaaacctggtcaagttattcccttgtttaaaCC-TGCTGGTACCATTATAA i otoGar3.GL873537 I 1 I 140 s mm10.chr11 22092979 158 - 122082543 CTGCCAGGTCTAGGTTGTCACTAGGAGGCTTTTGAGT-----AATTGGC-CAGTCTTCTTATGGTCTGTCTACCTTTAAACTTGCCCTCTTTC--TCCCATCTCCATAGGCAAAGG-----------------TTTATAAAATCACAAACTCA------TTACATCCTTGCTTAAACCGC-------CAAGTATCA i mm10.chr11 I 7 C 0 s canFam3.chr9 21445658 170 + 61074082 ctgcccagtccaggttgtcactatgaaggttttgagt-----aattgctccagactcctaattgtctccctggctccagatttgcccttctccaatcccttcaccacagccagaga----gg----------tctttacaaagggaaaatgtggtcaagttactcccctatttaaagcac-------ccagtgtaa i canFam3.chr9 I 27 I 5 s dasNov3.JH570468 449027 155 - 852752 ctactcagttttggttttcACCATGAAGCTTTTGGATGAAAAAATT----CAGACCCCAAATGCta-ccccacttctagata-------------tctccacaggacagccacaga----ga----------tctttccaaaaggtagacctgaccaagttattctaa-gcttaaccc-c-------tccatgtcc i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I a score=2394710.000000 s hg38.chr17_GL383564v2_alt 128247 208 + 133151 ttaaa----------aaaatacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggatatgttgaac-catttgctg--------cttcccaaatgttatgtg-ctct-------atgtctttgatttcca------catcttatccttttcc----tg------cctTTATGACCCCCTTTT s panTro5.chr17 16317354 208 + 83181570 ttaaa----------aaaatacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggatatgttgaac-catttgctg--------cttcccaaatgttatgtg-ctct-------atgtctttgatttcca------catcttatccttttcc----tg------cctTTATGATCCCCTTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222219 208 + 83442489 ttaaa----------aaaatacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggatatgttgaac-catttgctg--------cttcccaaatgttatgtg-ctct-------atgtctttgatttcca------catcttatccttttcc----tg------cctTTATGATCCCCTTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057375 208 + 4267968 ttaaa----------aaaatacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacacctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggatatgttgaac-catttgctg--------cttcccacatgttgtgtg-ctct-------atctcTTTGATTTCCA------CATCTTATCCTTTTCC----TG------CCTTTATGACCCCCTTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037612 208 - 2193130 tttaa----------aaaatacaacttcttaatcatggtccacaatacc-tttcacgattgggtgcct-agtaacccctcttgcccca--------------------------------------------ctgcttttccctcctatcccctt-t-gcttttcatcctggctgtgttgaac-catttgctg--------cttcccaaaTGTTATGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTGTCTTTTTCC----TG------CCTTTATGACCCCCTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30111170 252 - 77216781 ttaaa----------aaaacacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagccccactgcttttccctcctatcccctctgcttttccctcctatcccctctgcttttccCTCCTATCCCCTC-T-GCTTTTCATCCTGGCTATGTTGAAT-CATTTGCTG--------CTTGCCAAAAGTAATGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCATTTTCC----TG------CCTTTATGACCCCCTTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28022820 208 - 80997621 ttaaa----------aaaacacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggctatgttgaat-catttgctg--------cttgccaaaTGTAATGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCCTTTTCC----TG------CCTTTATGACCCCCTTTT i macFas5.chr16 C 0 I 304 s macNem1.NW_012014910v1 2080533 208 + 10377808 ttaaa----------aaaacacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggctatgttgaat-catttgctg--------cttgccaaaTGTAATGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCCTTTTCC----TG------CCTTTATGATCCCCTTTT i macNem1.NW_012014910v1 C 0 I 304 s cerAty1.NW_012006043v1 1965444 208 - 8458610 ttaaa----------aaaacacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggctatgttgaat-catttgctg--------cttgccaaaAGTAATGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCGTTTTCC----TG------CCTTTATGACCCCCTTTT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64910638 208 + 75148670 ttaaa----------aaaatacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggctatgttgaat-catttgctg--------cttgccaaaTGTAATGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCCTTTTCC----TG------CCTTTATGACCCCCTTTT i chlSab2.chr16 C 0 I 304 s manLeu1.NW_012106252v1 2150472 208 + 4244037 tttaa----------aaaacacaacttcttaatcatggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagcccca--------------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggctatgttgaat-cgtttgctg--------cttgccaaatgtaatgtg-ctct-------atgtctttgatttcca------catcttatccctttcc----tg------cctTTATGACCCCCTTTT i manLeu1.NW_012106252v1 C 0 I 309 s colAng1.NW_012122154v1 2173562 215 + 4569836 ttaaa----------aaaacacaacttcttaatcagggtccacaagacc-tttcatgattgggtgcct-agtaacccctctagccccactgcttt-------------------------------------ctgcttttccctcctatcccctc-t-gcttttcatcctggcTATGTTGAAT-CATTTGCTG--------CTTGCCAAATGTAGTGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCCTTTTCC----TG------CCTCTATGACCCCTTTTT i colAng1.NW_012122154v1 C 0 I 312 s calJac3.chr5 46129676 206 - 159171411 tt-aa----------gaaatccagcttcttgatcacggtccacaaggcc-tttcatgattgggtgcct-agtgacccctttagcccta--------------------------------------------ctgctttcccctcctatccccgc-t-gcttttcaccctggccttgtcgaac-catttgctg--------cttcccaaaTGTATTGTG-TTCC-------ATGTCTTTGATTCCCA------CCTCTTATCCTTTTTT----TG------CCT-GATGACCCCCTTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839639 206 + 3513951 tt-aa----------gaaatccaacttcttgattatggtccacaaggcc-tttcatgattgggtgcct-agtaacccctctagcccta--------------------------------------------ctgctttcccctcctatcccctc-t-gcttttcatcctggctatgttgaac-catttgctg--------cttcccaaaTGTATTGTG-CTCT-------ATGTCTTTGATTTCCA------CATCTTATCCTTTTTT----TG------CCT-TACGATCCCCTTTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888314 205 + 1920343 tt-aa----------gaaatgcaacttcttgatcatggtccacaaggcc-tttcatgattgggtgcct-agtagcccctttagccctg--------------------------------------------ctgc-ttcccctcctatcccctc-t-gctTTTCATCCTGCCTATGTTGAAC-CATTTTCTG--------CTTCCCAAATGTATTGTG-CTCT-------ATGTCTTTGATTCCCA------CATCTTATCCTTTTTT----TG------CCT-CATGACCCCCTTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004715 206 - 7032639 tt-aa----------gaaatccaacttcttgctcatggtccacaaggcc-tttcatgattgggtgcct-agtaacctctctagcccta--------------------------------------------ctgctttcccctcctatcccctc-t-gcttttcatcctggctctgttgAAC-CATTTTCTG--------CTTCCCAAATGTATTGTG-TTCT-------ATGTCTTTCATTCCTA------CATCTTATCCTTTTTT----TG------CCT-TATGACCCCCTTTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22832766 199 + 28711273 ttaaaa--------taaagtgtaacttcttaatcatggtctgcaaggcc-tttcatgatctggtgcct-agtcacccctctgccccca--------------------------------------------tcactatgccctcctgttctctt-gagctgttcctcctggctatattggAC-CATCAG------------GTCTCAGATGTCTCATG-AGCT-------GTGTCTTTGGTTTTTG--------------CCTTTTCC----TG------CCTTTACCACCCCTTTCC i otoGar3.GL873537 I 140 C 0 s mm10.chr11 22093137 198 - 122082543 -------------------------TTATTAAATCT-------AACAAC-TTCTATAGATTGGTGCAGAAGTCACTGCTCTGGTTCCA--------------------------------------------ATACTGTCTCTTCCTGTCTCCTG-T-GCTCTTCTTCCTGACTGTATCAATTGTATTAGCTGTCAAATGATTTCCAGAATGTATCCTGCCCCT-------GTGCCTTTGGTTTCCA------CAGACTGAGCTTTTTCATCATC------CCGGGAGGAATCTAT--- i mm10.chr11 C 0 C 0 s canFam3.chr9 21445833 221 + 61074082 -----gt------gtaaaatctaactactt-atcagggtccacaaggccttTTCAAGACTGCGTGCCT-AGT-ACACTTCTAGTCCCA--------------------------------------------TCGCTGTTCCTTCCTGTCTCCTTGT-ACCTTTAATCCTGGCTATG--GAAC-AATTTACTG--------C-CCCCAAATGTATCATG-cttttgaggagccttccctaatttcctacaaaccatgttggtctttctc----tgggtgcccccataggaccctgtg-- i canFam3.chr9 I 5 C 0 s dasNov3.JH570468 449182 212 - 852752 ------ccaatgccccaaattcaccttctt-attatggtccacaaggcc-attcatgcttgggtgcct-agtgacccctctagtccca--------------------------------------------tcactatctcttcctgtccccttgc-acttttcatcctagctatgttgaac-catttgctg--------ctccccaaatgtgacatatccct-------gtttctttggtttcca------cagtttatctttttcc----tg------ctcttacaatccctttc- i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I a score=85390.000000 s hg38.chr17_GL383564v2_alt 128455 7 + 133151 TGTCCAC s panTro5.chr17 16317562 7 + 83181570 TGTCCAC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222427 7 + 83442489 TGTCCAC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057583 7 + 4267968 TGTCCAC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037820 7 - 2193130 TGTCCAC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30111422 7 - 77216781 TGTCCAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28023332 7 - 80997621 TGTCCAC i macFas5.chr16 I 304 C 0 s macNem1.NW_012014910v1 2081045 7 + 10377808 TGTCCAC i macNem1.NW_012014910v1 I 304 C 0 s cerAty1.NW_012006043v1 1965652 7 - 8458610 TGTCCAC i cerAty1.NW_012006043v1 C 0 I 304 s chlSab2.chr16 64911150 7 + 75148670 TGTCCAC i chlSab2.chr16 I 304 C 0 s manLeu1.NW_012106252v1 2150989 7 + 4244037 TGTCCAC i manLeu1.NW_012106252v1 I 309 C 0 s colAng1.NW_012122154v1 2174089 7 + 4569836 TGTCCAC i colAng1.NW_012122154v1 I 312 C 0 s calJac3.chr5 46129882 7 - 159171411 TATCCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839845 7 + 3513951 TATCCAC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888519 7 + 1920343 TATCCAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004921 7 - 7032639 TATCCAC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22832965 7 + 28711273 AGCCTTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22093335 7 - 122082543 TGACCAT i mm10.chr11 C 0 C 0 s canFam3.chr9 21446054 7 + 61074082 catccat i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 449394 7 - 852752 catcctt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I a score=77969.000000 s hg38.chr17_GL383564v2_alt 128462 7 + 133151 TCTCTTT s panTro5.chr17 16317569 7 + 83181570 TCTCTTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222434 7 + 83442489 TCTCTTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057590 7 + 4267968 TCTCTTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037827 7 - 2193130 TCTTTTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30111429 7 - 77216781 TCTCttt i rheMac8.chr16 C 0 I 794 s macFas5.chr16 28023339 7 - 80997621 TCTCTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081052 7 + 10377808 TCTCTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1965963 7 - 8458610 TCTCTTT i cerAty1.NW_012006043v1 I 304 C 0 s chlSab2.chr16 64911157 7 + 75148670 TCTCTTT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2150996 7 + 4244037 TCTCTTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174096 7 + 4569836 TCTCTTT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129889 7 - 159171411 CCTCCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839852 7 + 3513951 TCTCCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888526 7 + 1920343 TCTCCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004928 7 - 7032639 TCTCCTT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22832972 6 + 28711273 TTTCTT- i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22093342 6 - 122082543 -CTTATT i mm10.chr11 C 0 C 0 s canFam3.chr9 21446061 7 + 61074082 tccatct i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 449401 7 - 852752 tatcctt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I a score=183758.000000 s hg38.chr17_GL383564v2_alt 128469 18 + 133151 ------------GAGCCTTCATATTACTTG s panTro5.chr17 16317576 18 + 83181570 ------------GAGCCTTCATATTACTTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222441 18 + 83442489 ------------GAGCCTTCATATTACTTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057597 18 + 4267968 ------------GAGCCTTCATATTACTTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037834 18 - 2193130 ------------GAGCCTTCATATTACTTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28023346 18 - 80997621 ------------GAGCCTTCATTTTACTTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081059 18 + 10377808 ------------GAGCCTTCATTTTACTTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1965970 18 - 8458610 ------------GAGCCTTCATTTTACTTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911164 18 + 75148670 ------------GAGCCTTCATTTTACTTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151003 18 + 4244037 ------------GAGCCTTCATTTTACTTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174103 18 + 4569836 ------------GAGCCTTCATTTTACTTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129896 18 - 159171411 ------------GAGCCTTCATATTACTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839859 18 + 3513951 ------------GAGCCTTCATATTACTTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888533 18 + 1920343 ------------GAGCCCTCATATTACTTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004935 18 - 7032639 ------------GAACCTTCATATTACTTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22832978 18 + 28711273 ------------GAGCCATCATGATGCTTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22093348 9 - 122082543 ---------------------TATGACTTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21446068 13 + 61074082 -----------------gtcatagcacttg i canFam3.chr9 C 0 I 5 s dasNov3.JH570468 449408 30 - 852752 gaggattcaagttagccataatattatttg i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e rheMac8.chr16 30111436 794 - 77216781 I a score=226098.000000 s hg38.chr17_GL383564v2_alt 128487 24 + 133151 AAAAGGCTTCTCTAATTCCCCAAA s panTro5.chr17 16317594 24 + 83181570 AAAAGGCTTCTCTAATTCCCCAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222459 24 + 83442489 AAAAGGCTTCTCTAATTCCCCAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057615 24 + 4267968 AAAAGGCTTCTCTAATTCCCCAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037852 24 - 2193130 AAAAGGCTTCTCTAATTCCCCCAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28023364 24 - 80997621 CAAAGGCTTCTCTAATTGCCCAAA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081077 24 + 10377808 CAAAGGCTTCTCTAATTCCCCAAA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1965988 24 - 8458610 CAAAGGCTTCTCTAATTCCCCAAA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911182 24 + 75148670 CAAAGGCTTCTCTAATTCCCCCCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151021 24 + 4244037 CAAAGGCTTCTCTAATTCCCCAAA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174121 22 + 4569836 CAAAGGCT--TCTAATTCCCCAAA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129914 24 - 159171411 AAAAGGCTTTGCTAATTCTCCAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839877 24 + 3513951 AAAAGGCTTTGCTAATTCTCCAAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888551 24 + 1920343 AAAAGGCTTTGCTAATTCTCCAAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004953 24 - 7032639 AAAAGGCTTTGCTAATTCTCCAAA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22832996 24 + 28711273 AGAAATCTTCCTTAACTTCCCCAA i otoGar3.GL873537 C 0 I 1353 s mm10.chr11 22093357 24 - 122082543 AGAAAGCCTTCCTCCCTTCCTAAA i mm10.chr11 C 0 C 0 s dasNov3.JH570468 449438 24 - 852752 aaaagtcttccccaacatccccaa i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e canFam3.chr9 21446081 5 + 61074082 I e rheMac8.chr16 30111436 794 - 77216781 I a score=77518.000000 s hg38.chr17_GL383564v2_alt 128511 8 + 133151 AACCATGT s panTro5.chr17 16317618 8 + 83181570 AACCATGT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222483 8 + 83442489 AACCATGT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057639 8 + 4267968 AACCATGT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037876 8 - 2193130 AACCATGT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28023388 8 - 80997621 AACCATGT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081101 8 + 10377808 AACCATGT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966012 8 - 8458610 AACCATGT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911206 8 + 75148670 AAACATGT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151045 8 + 4244037 AACCATGT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174143 8 + 4569836 AACCATGT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129938 8 - 159171411 AATCATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839901 8 + 3513951 AATCATGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888575 8 + 1920343 AATCATGt i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004977 8 - 7032639 AATCATGT i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22093381 8 - 122082543 CCCCATAT i mm10.chr11 C 0 I 1992 s dasNov3.JH570468 449462 8 - 852752 aaccaagt i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e canFam3.chr9 21446081 5 + 61074082 I e otoGar3.GL873537 22833020 1353 + 28711273 I e rheMac8.chr16 30111436 794 - 77216781 I a score=10035.000000 s hg38.chr17_GL383564v2_alt 128519 1 + 133151 C s panTro5.chr17 16317626 1 + 83181570 C i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222491 1 + 83442489 C i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057647 1 + 4267968 C i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037884 1 - 2193130 C i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28023396 1 - 80997621 C i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081109 1 + 10377808 C i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966020 1 - 8458610 C i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911214 1 + 75148670 C i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151053 1 + 4244037 C i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174151 1 + 4569836 C i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129946 1 - 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839909 1 + 3513951 C i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888583 1 + 1920343 t i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004985 1 - 7032639 C i aotNan1.NW_018502359v1 C 0 C 0 s dasNov3.JH570468 449470 1 - 852752 c i dasNov3.JH570468 C 0 I 1673 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e canFam3.chr9 21446081 5 + 61074082 I e otoGar3.GL873537 22833020 1353 + 28711273 I e rheMac8.chr16 30111436 794 - 77216781 I a score=1423973.000000 s hg38.chr17_GL383564v2_alt 128520 183 + 133151 CT-----------TTT-AAAAAtt---ttccttt-----------gggacagagtctcgctctgtcaccca-------------tagtgccatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgcagctggaattacaggcacatgtcagcatgcccagctaatttttgtatttttagtagggacaggg s panTro5.chr17 16317627 182 + 83181570 CT-----------TTT-AAAAAtt---ttcc-tt-----------gggacagagtctcgctctgtcgccca-------------tagtgccatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgcagctggaattacaggcacatgtcagcatgcccagctaatttttgtatttttagtagggacaggg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222492 182 + 83442489 CT-----------TTT-AAAAAtt---ttcc-tt-----------gggacagagtctcgctctgtcgccca-------------tagtgccatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgcagctggaattacaggcacatgtcagcatgcccagctaatttttgtatttttagtagggacaggg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057648 184 + 4267968 TT-----------TTTAAAAAAtt---ttccttt-----------gggacagagtcttgctctatcgtcca-------------tagtgccatcttggttcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgcagttggaattacaggcacatgccagcatgcccagctaatttttgtatttttagtagggacaggg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2037885 183 - 2193130 tt-----------ttt-ttttctt---ttccttt-----------gggacagagtctcgctctgtcgccct-------------tagtgccatcttggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgtggctggaattacaggcacatgccagcacgcccagctaatttttgtatttttagtagggacgggg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28023397 201 - 80997621 ------tttttttttt-ttttctt---tttcttt-----------gggacagagtcttgctctgtcgcccagggtggagtgcagtggtgccatcttggtgcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgtagctgcaattacaggcacatgccagcatgcccaggtaatttttgtatttttagtagggacgggt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081110 205 + 10377808 tt--tttttttttttt-ttttctt---tttcttt-----------gggacagagtcttgctctgtcgcccagggtggagtgcagtggtgccatcttggtgcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgtagctgcaattacaggcacatgccagcatgcccaggtaatttttgtatttttagtagggacgggg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966021 207 - 8458610 tttctttttttttttt-ttttctt---tttcttt-----------gggacagagtcttgctctgtcgcccagggtggagtgcagtggtgccatcttggtgcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgtagctgcaattacagacacatgccagcatgcccaggtaatttttgtatttttagtagggacgggg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911215 200 + 75148670 tt-------tttttct-ttttatt---tttcttt-----------gggactgagtcttgctctgttgcccagggtggagtgcagtggtgccatcttggcgcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctcccaagtgtagctggaattacaggcacatgccggcatgcccaggtaatttttctatttttagtagggatgggg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151054 202 + 4244037 tt-----tcttttttt-ttttctt---tttcttt-----------gggacagagtcttgctctgtcacccagggtggagtgcagtggtgccatcttggtgcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccaagtgtagctgcaattacaggcacatgccagcatgcccaggtaatttttgtatttttagtagggacgggg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174152 197 + 4569836 tt----------tttt-ttttctt---tttcttt-----------gggacagagtcttgctctgtcgcccagggtggagtgcagtggtgccatcttggcgcactgcaacctctgcctcccgagttcaagcagttctcctgcctcagcctcccaagtgtagctggaattacaggcacacgccagcatgcccaggtaatttttgtatttttagtagggacgggg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46129947 206 - 159171411 Ct--ttttttctctct-----------ttttttttggtgggggcagggacagagtctcactctgttgcctggtgtgaagtgcagtggtgccgtcttggctcactgcaaactctgcctcctgggttccagcgattctcctgcctcagcctctgaagtgtagctggaattacaggcacatgccagcacacccagctaatcttcgtatttttagaa---acgggg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1839910 219 + 3513951 CT--ttttctctctct-ctctcttttcttttttttggtgggggcagagacagagtctcactctgttgcctgggctggagtgcagtggtgccatcttggctcactgcaagctctgcctcctgggttctagcgattctcctgcctcagcctctgaagtacagcaggagttacaggcacatgccagcatgcccagctaatctttgtatttttagtagggatgggg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888584 215 + 1920343 ct--ttttttc-ctct-ctctttt---tttttcttggtgggggaagagacagagtctcactctgtcacctgggctggagtgcagtggtgtcatcttggctcactgcaagctctgcctcctgggttccagcgattctcctgcctcagcctctgaagtgtagcaggaattacaggcacatgccagcatgcccagctaatctttgtgtttttagtagggacaggg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7004986 213 - 7032639 Ct--ttttt---ctct-ctttttt---ttttttttggtgggggcagggacagagtctcactctgtcacctgggctggagtgcagtggtgctatcttggctcactgcaacctctgcctcctgggttccagcgattctcctgactcagcctctgaagtgtagctggaattacaggcacatgccagcaggcccagctaatctttgtatttttagtagggacaggg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 449471 1673 - 852752 I e canFam3.chr9 21446081 5 + 61074082 I e otoGar3.GL873537 22833020 1353 + 28711273 I e rheMac8.chr16 30111436 794 - 77216781 I a score=1434551.000000 s hg38.chr17_GL383564v2_alt 128703 144 + 133151 tttctccatgttggcccggcttgtctcgaactcctgac-------------------ctcaagtgatacactcacctcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATCTCTCCTGGGTGCCTCC s panTro5.chr17 16317809 144 + 83181570 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatacactcacttcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATCTCTCCTGGGTGCCTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222674 144 + 83442489 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatacactcacttcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATCTCTCCTGGGTGCCTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057832 144 + 4267968 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctcaagtgatccactcacctcagcctctcaaagtgttgggattacgggtgtgagccaccatgcccagccTCCAAAAACCGTGTCAATATCTCTCCTGGGTGCCTCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038068 144 - 2193130 tttctccatgttggccaggcttgtcacaaactcctcac-------------------ctcaagtgatccactcacctcagcctcccaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATCTCTCCTGGGTGCCTCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112230 144 - 77216781 tttctccatgttggccaggcttgtcttgaactcctgac-------------------ctgaagtgatccactcacctcagcctctcaaagtgttgggactacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATTTCTCCTGGGTGCCTCC i rheMac8.chr16 I 794 C 0 s macFas5.chr16 28023598 144 - 80997621 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatccactcacctcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATTTCTCCTGGGTGCCTCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081315 144 + 10377808 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatccactcacctcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATTTCTCCTGGGTGCCTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966228 144 - 8458610 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatccactcacctcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATTTCTCCTGGGTGCCTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911415 144 + 75148670 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatccactcaccccagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATATCAATATCTCTCCTGGGTGCCTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151256 144 + 4244037 tttctccatgttggccaggcttgtctcgaactcctgac-------------------ctgaagtgatccactcacctcagcctctcaaactgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCATGTCAATATTTCTCCTGGGTGCCTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174349 139 + 4569836 tttctccatgttggccaggcttgtctggaactcctgac-------------------ctgaagtgatccactcacctcagcctctcaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAAACCAC-----CCTCTCTCCTGGGTGCCTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130153 162 - 159171411 tttctctatgttggccaggctggtctcgaactccggacctcccaacactttcggaggctgagatgatccacccgcctcagcctcccaaagtgttgagattacagctgtgaggcaccatgcccagccTCCAAAACCCATGTCAGTATCTCTCCTGGGTG-CTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840129 163 + 3513951 tttccctatgttggccaggctggtctcgaactccagacctcccaacactttgggaggctgaggtgatccacttgcctcagcctcccaaagtgttgggattacaggtgtgagccaccatgcccagccTCCAAAACCCATGTCAATATCTCTCCTGAGTGCCTCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888799 163 + 1920343 tttccctatgttggccaggctggtctcgaactccggacctcccaacactttgggaggctgaggtgatccacctgcttcagcctcccaaagtgttgggattacaggtgacagccaccatgcccagccTCCAAAAACCATGTCAATATCTCTCCTGGGTCCCTCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7005199 163 - 7032639 tttccctatgttggccaggctggtcttgaactccggacctcccaacactttgggaggctgaggtgatccacctgcctcagcctcccaaagtgttgggattacaggtgtgagccaccatgcccagtcTCCAAAAACCATGTCAATATCTCTCCTGGGTGCCTCT i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 449471 1673 - 852752 I e canFam3.chr9 21446081 5 + 61074082 I e otoGar3.GL873537 22833020 1353 + 28711273 I a score=1503642.000000 s hg38.chr17_GL383564v2_alt 128847 140 + 133151 AAAGTGAGGGCCTCGGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGcagatgctgttctaggaaatgcctctccataccagctatctctctctgctgcatc s panTro5.chr17 16317953 140 + 83181570 AAAGTGAGGGCCTCGGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGcagatgctgttctaggaaatgcctctccataccagctatctctctctgctgcatc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222818 140 + 83442489 AAAGTGAGGGCCTCGGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGcagatgctgttctaggaaatgcctctccataccagctatctctctctgctgcatc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4057976 140 + 4267968 AAAGTGAGGGCCTCGGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGGAAATGCCTGTCCATGCCAGCTATCTCTCTCTGCTTCATC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038212 140 - 2193130 AAAGTGAGGGCCTCGGGGAGCT-----GTCACAGTCAGGCAGTGACCCCTCAGCACTCAC-AGGAAGCGTGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGGAAATGTCTCTCCATGCCAGCGATCTCTCTCTGCTGCATC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112374 140 - 77216781 AAAGGGAGGGTCTCAGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGGAAATGCCTCTCCATGCCAGCTATCTCTCTCTGCTGCATC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28023742 140 - 80997621 AAAGGGAGGGTCTCAGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGGAAATGCCTCTCCATGccagctatctctctctgctgcatc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081459 140 + 10377808 AAAGGGAGGGTCTCAGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGTCCACCTCTACCATGTCTGGcagatgctgttctaggaaatgcctctccatgccagctatctctctctgctgcatc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966372 140 - 8458610 AAAGGGAGGGTCTCAGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGGAAATGCCTCTCCATGCCAGCTATCTCTCTCTGCTGAATC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911559 140 + 75148670 AAAGTGAGGGTCTCAGGGAGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGGAAATGCCTCTCCATGCCAGCTATCTCTCTCTGCTGCATC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151400 140 + 4244037 AAAGGGAGGGTCTCAGGGGGCT-----GTCACAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGCCACCTCTACCATGTCTGGCAGATGCTGTTCTAGCAAATGCCTCTCCATGccagctatctctctctgctgcatc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174488 140 + 4569836 AAAGTGAGGGTCTCAGGGAGCT-----GTCGCAGTCAGGCAGTGACCTCTCAGCACTCAC-AGGAAGCATGGTCACCTCTACCATGTCTGGCAGATGCCATTCTAGGAAATGCCTCTCCATGCCAGCTATCTCTCTCTGCTGCATC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130315 124 - 159171411 AAAGTGAGGGCCTCAGGATGCTGAGAGGTCACAGTCAGGCAGTGACT--------------------CATGGCCACCTCCATCATGTCTGGCAGTTGCTGTTTTAGGAAATGGCTCTCCATGCCAGCCA--TCTCTCTGCTGCATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840292 119 + 3513951 AAAGTGAGGGCCTCACAATGCTGAGAGGTCA----CAGGCAGTGACT--------------------CATGGCCA---CCATCATGTCTGGCAGTTGCTGTTTTAGGAAATGCCTCTCCATGCCAGCTATCTCTCTCTGCTGCATC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1888962 126 + 1920343 AAAGTGAGGGCCTCACAATGCTGAGAGGTCACAGTCAGGCAGTGACT--------------------CATGGCTGCCTCCATCATGTCTGGCAATTGCTGTTTTAGGAAATGCCTCTCCAGGCCAGCCATCTCTCTCTGCTGCATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7005362 126 - 7032639 AAAGTGAGGACCTCAGGATGCTGAGAGGTCACAGTCAGGCAGTGACT--------------------CATGGCCACCTCCATCATGTCTGGCAGTTGCTGTTTTAGGAAATGCCTCTCCATGCCAGCCATCTCTCTCTGCTGCATC i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22834373 141 + 28711273 AAAGCAAGGGCCTCGGAGAGCT-----GTCACAGTCAGGTTACCAGCTCTCGGCGCTCACAAGGAAGCACAGGCACCCCCACCATGTCTGGTAGCTGCTATTCCAGGAAATGCCCCTCCGTGCCTGCCCTCTCTCTCTGCTCCACC i otoGar3.GL873537 I 1353 T 1482 s dasNov3.JH570468 451144 141 - 852752 AAAGCAAGGGCCTCAGAGAGCT-----GTCATAGTCAGGTAGCTCATTCTCAGCACTCACAAGGAAGCCAAGGTATCTCCACCATGTCTGGTAACTGCTGTTCTAGGAAATGCCCCTCCGTGCCAGCCATCTCTCTCTGCTCCACC i dasNov3.JH570468 I 1673 T 724 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3010323 638 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e canFam3.chr9 21446081 5 + 61074082 I a score=19110.000000 s hg38.chr17_GL383564v2_alt 128987 2 + 133151 ca s panTro5.chr17 16318093 2 + 83181570 ca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222958 2 + 83442489 ca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058116 2 + 4267968 CA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038352 2 - 2193130 CA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112514 2 - 77216781 CA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28023882 2 - 80997621 ca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081599 2 + 10377808 ca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966512 2 - 8458610 ca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911699 2 + 75148670 CA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151540 2 + 4244037 ca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174628 2 + 4569836 CA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130439 2 - 159171411 TA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840411 2 + 3513951 TA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889088 2 + 1920343 TA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7005488 2 - 7032639 TA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3010961 2 + 8555354 CA i proCoq1.NW_012135969v1 I 638 C 0 e mm10.chr11 22093389 1992 - 122082543 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21446081 5 + 61074082 I e otoGar3.GL873537 22834514 1482 + 28711273 T a score=348106.000000 s hg38.chr17_GL383564v2_alt 128989 30 + 133151 ccccctgcatccctctttcacaacacttgc s panTro5.chr17 16318095 30 + 83181570 ccacctgcatccctctttcacaacacttgc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222960 30 + 83442489 ccacctgcatccctctttcacaacacttgc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058118 30 + 4267968 CCCCCTGCATCCCTCTTTCACAACACTTGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038354 30 - 2193130 CCCCCTGCATCCCTCTTTCACAACACTTGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112516 30 - 77216781 CCCCCTGCATCCCTCTTTCACAACACTTGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28023884 30 - 80997621 ccccctgcatccctctttcacaacacttgc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081601 30 + 10377808 ccccctgcatccctctttcacaacacttgc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966514 30 - 8458610 ccccctgcatccctctttcacaacacttgc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911701 30 + 75148670 CCCCCTGCATCCCTCTTTCACAACACTTGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151542 30 + 4244037 ccccctgcatccctctttcacaacacttgc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174630 30 + 4569836 CCCCCTGCATCCCCCTTTCACAACACTTGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130441 30 - 159171411 CCCCCAGCATCCCTCTTTCACAGCACTTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840413 30 + 3513951 CCCTCAGCATCCCTCTTTCACAGCACTTGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889090 30 + 1920343 CCCCCGGTATCCCTCTTTCATAGCACTTGA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7005490 30 - 7032639 CCCCTGGCATCCTTCTTTCACAGCACTTAA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3010963 29 + 8555354 CCCCATGCATCCCTC-TTCATAGCACTTGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22833032 30 + 28711273 CCCTGTGCGTCCCTCTTTCTTAGCCCTTCA i otoGar3.GL873537 T 1482 C 0 e mm10.chr11 22093389 1992 - 122082543 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21446081 5 + 61074082 I a score=3092711.000000 s hg38.chr17_GL383564v2_alt 129019 254 + 133151 attctgtaccatacttgcttatagatgtgtctatctctcttctaaacttgggctccttgtggccagaattacaactcactct-ttttgtatcTATCACACAGAACCCAGTGTTGGCTGAGTTGAGTGCATAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAatgaagggagggat---gaatggatggcacaatggatggcagaatggCTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGTGTTGAT s panTro5.chr17 16318125 254 + 83181570 attctgtaccatacttgcttatagatgtgtctatctctcttctaaacttgggctccttgtggccagaattgcaactcactct-ttttgtatcTATCATACAGAACCCAGTGTTGGCTGAGTTGAGTGCATAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAatgaagggagggat---gaatggatggcacaatggatggcagaatggCTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGTGTTGAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16222990 254 + 83442489 attctgtaccatacttgcttatagatgtgtctatctctcttctaaacttgggctccttgtggccagaattgcaactcactct-ttttgtatcTATCATACAGAACCCAGTGTTGGCTGAGTTGAGTGCACAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAatgaagggagggat---gaatggatggcacaatggatggcagaatggCTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGTGTTGAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058148 254 + 4267968 ATTCTGTACCATACTTGCTTATAGATGTGTCTATCTCTCTTCTAAACCTGGGCTCCCTGTGGCCAGAATTGCAACTCACTCT-TTTTGTATCTATCACACAGAACCCAGTGTTGGCTGAGTTGAGTGCATAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAATGAAGGGAGGGAT---GAATGGATGGCACAATGGAAGGCAGAATGGCTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGTGTTGAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038384 250 - 2193130 ATTCTGTACCATACTTGCTTATAGATGTG----TCTCTTTTCCAAACTTGGGCCCCTTGTGGCCAGAATTGCAACTCACTCT-TTTTGTATCCATCACACAGAACCCAGTGTTGGCTGGGTtgagtgcataaataaaagagaaactgagtcaatgattgcatgaattaataaatgaagggagggat---gaatggatggcacaatggatggcagaatggTTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGTGTTGAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112546 254 - 77216781 AGTCTGTACCATACTTGCTTATAGATGTGTCTATCTCTCTTCTAAACTTAGGCACCTTGTGGCCAGAATTGCAACTCACTCT-TTTTGTATCCATCACACAGAACCCAGTGTTGGCtgaattgagtgcagaaataaaagagaaactgagtcaatgattgcatgaattaataaatgaaaggagggat---gaatggatgGCACAATGGATGGCAGAATGCCTCAGCTTTTCCAAGCAAGAGCCTGCCTTTTGTGTTGAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28023914 254 - 80997621 agtctgtaccatacttgcttatagatgtgtctatctctcttttaaacttaggctccttgtggccagaattgcaactcactct-ttttgtatccATCACACAGAACCCAGTGTTGGCtgaattgagtgcagaaataaaagagaaactgagtcaatgattgcatgaattaataaatgaagggagggat---gaatggatgGCACAATGGATGGCAGAATGCCTCAGCTTTTCCAAGCAAGAGCCTGCCTTTTGTGTTGAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081631 254 + 10377808 agtctgtaccatacttgcttatagatgtgtctatctctcttctaaacttaggctccttgtggccagaattgcaactcactct-ttttgtatccATCACACAGAACCCAGTGTTGGCTGAATTGAGTGCAGAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAATGAAGGGAGGGAT---GAATGGATGGCACAATGGACGGCAGAATGCCTCAGCTTTTCCAAGCAAGAGCCTGCCTTTTGTGTTGAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966544 254 - 8458610 agtctgtaccgtacttgcttatagatgtgtctatctctcttctaaacttaggctccttgtggccagaattgcaactcactct-ttttgtatccATCACACAGAACCCAGTGTTGGCtgaattgagtgcagaaataaaagagaaactgagtcaatgattgcatgaattaataaatgaagggagggat---gaatggatgGCACAATGGACGGCAGAATGCCTCAGCTTTTCCAAGCAAGAGCCTGCCTTTTGTGTTGAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911731 254 + 75148670 AGTCTGTACCATACTTGCTTATAGATGTGTCTATCTCTCTTCTAAACTTGGGCTCCTTGTGGCCAGAATTGCAACTCACTCT-TTTTGTATTCATCACACAGAACCCAGTGTTGGCTGAATTGAGTGCAGAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAATGAAGGGAGGGAT---GAATGGATGGCACAATGGACGGCAGAATGCCTCAGCTTTTCCAAGCAAGAGCCTGCCTTTTGTGTTGAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151572 254 + 4244037 agtctgtaccatacttgcgtatagatgtgtctatctctcttctaaacttaggctccttgtggccagaattgcaactcattct-ttttgtatccatcacacagaacccagTGTTGGCTGAATTGAGTGCAGAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAATGAAGGGAGGGAT---GAATGGATGGCACAATGGATGGCAGAATGCCTCAGCTTTTCCAAGCAAGAGCCTGCCTTTTGTGTTGAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174660 254 + 4569836 AGTCTGCACCATACTTGCTTATAGATGTGTCTATCTCTCTTCTAAACTTGGGCTCCTTGTGGCCAGAATAGCAACTCACTCT-TTTTGTATCCATCACACAGAACCCAGTGTTGACTGAGTTGAGTGCAAAAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAATGAAGGGAGGGAT---GAATGGATGGCACAATGGACGGCAGAATGCCTCAGCTTTTCCGTGCGAGAGCCTGCCTTTTGTGTTGAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130471 242 - 159171411 ATTCTCTACCATGCCTGCTTGTAGATGTGTCTCTCTCTCTTCTAAACTTTTTCTCCTTGTGGCCAGAATTGCAACCCATTCT-TTTTATATCCACCACACAGAACCCAGTGTTGGCTGAGTtgagtgcatgaataaaagagaaactgagtcaatgattgcatgaattaataaaggaaggcagggat---gaaAGGACTGCACAATGG------------CTCAGCCTTTCCAAGCGAGAGCCTGTCTTTTGGGTTGAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840443 242 + 3513951 ATTCTGTACCATGCCTGCTTATAGATGTGTCTATCTCTCTTCTAAATTTTTTCTCCTTGTGGCCAAAATTGCAAGTCATTCT-TTTTATATCCATCACACAGAACCCAGTGTTGGCTGAGTTAAGTGCATGAATAAAAGAGAAACTGAGTCAATGATTGCATCAATTAATAAACGAAGGCAGAGAT---GAAAGGACTGCACAATGT------------CTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGCATGGAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889120 240 + 1920343 ATTCTGTACCATGCCTGCTTATACATGTGTCTATCTCTCTTCTAAACTTTTTCTCCTTGTGATCAGAATTGCAACCCATTCT-TTTTATATCTGTCACACAGAACCCAGTGTTGGCTGAGTTGAGTGCATGAATAAAAGAGAAACTGAGTCAATGATTGCATGAATTAATAAA-GAAGGCAGGGAT---GAAAGGACTGCACAATGG------------CTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGC-TTGAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7005520 242 - 7032639 ATTCTGTATCATGCCTGCTTATAGATATGTCTATCTCTCTTCTAAACTTTTTCTCCTTGTGGACAGAATTGCAGCCCATTCT-TTTTATATCCATCACACAGAACCCAGCGTTGGCTGAGTTGAGTGCATGAATAAAAGAGAAACTGAGTCAGTGATTGCATGAATTAATAAACAAAGACAGGGAT---GAAAGGACTGCACAATGG------------CTCAGCTTTTCCAAGCGAGAGCCTGCCTTTTGCACTGAT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3010992 241 + 8555354 ATGCTGTACCATAATTATTTATGGATGTGTCTATCTCTCTCGTACATTTGGGCTCCTTGTGGCCAGAATTACAGCTCACCTG-TTTTGCATCTGTCACATAGAACCCAGTGTTGGCTGAGTtgaatggatgaataaaagagaaattgaatcaatgattgcataaattaatgaatgaagag-gggat---gaatgGGTGGCACGATGA------------CTCAGCTTTTCCCGGGGAGAGCCTACTTTTTGCATTGAT i proCoq1.NW_012135969v1 C 0 I 17 s otoGar3.GL873537 22833062 236 + 28711273 AGGCTGCACCGT-ATTATTTTTGGATGTG----TCGCTCTTCTACACGGGGGCTCCTTGTGGCTGCTATTACAACTCATTTGTTTTTTTATCTCTAACATAAAACCCAGCATTGGCTGAGTtgaatggatgaataaaagacatgttaaatcaatgattgcataaattaatgaataaaGGG-GGGAT----AATGGGTGGCACAAGGG------------CTCAGCGTTGCCTAGGGAGAGCCTGCTTTTTGCATTGAT i otoGar3.GL873537 C 0 I 3 s canFam3.chr9 21446086 246 + 61074082 atactgtaccataattacttatggatgtatctgtctctttcctaaatttggacttcttgagccatgaattgcagtttgtgcttttttgtatccctcacacAGAAACATATGATGGCTATATTGAACGGATGAATCAAAGAGAAATCTAGTGAGTTATTGCATAAACCGATGAATGAAGAGAGAGATGGTGAGTGGATGGTACAATGG------------TTTAGCTTTTCTAAGGGAGAGCCTGTATTTTGCATTGAT i canFam3.chr9 I 5 C 0 e mm10.chr11 22093389 1992 - 122082543 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T a score=177186.000000 s hg38.chr17_GL383564v2_alt 129273 15 + 133151 ---GAAAACACATGGTGG s panTro5.chr17 16318379 15 + 83181570 ---GAAAACACATGGTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223244 15 + 83442489 ---GAAAACACATGGTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058402 15 + 4267968 ---GAAAACACATGGTGG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038634 15 - 2193130 ---GAAAACATACGGCGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112800 15 - 77216781 ---GAAAACGCATGGTGG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024168 15 - 80997621 ---GAAAACGCATGGTGG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2081885 15 + 10377808 ---GAAAACGCATGGTGG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1966798 15 - 8458610 ---GAAAACGCATGGTGG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64911985 15 + 75148670 ---GAAAACGTATGGTAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2151826 15 + 4244037 ---GAAAACGCATGGTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2174914 15 + 4569836 ---GAAAACACATGGTGG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130713 15 - 159171411 ---GAAAACACATGGTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840685 15 + 3513951 ---GAAAACACATGGTGG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889360 15 + 1920343 ---GAAAACACATGGCGG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7005762 15 - 7032639 ---GAAAACACATGGTGA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833301 15 + 28711273 ---AAAAGTGCACGGTGG i otoGar3.GL873537 I 3 C 0 s canFam3.chr9 21446332 18 + 61074082 GTTGAAAGCACACAGTGG i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011233 17 + 8555354 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T a score=2116043.000000 s hg38.chr17_GL383564v2_alt 129288 182 + 133151 AGGCAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGAATTCAGAAACCTA-GGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTTTTGTTCACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTTACTATTTACCCTT---------TGGGTCTTGGAGAT----------TT s panTro5.chr17 16318394 181 + 83181570 AGGCAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGAATTCAGAAACCTA-GGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTTTTGTTCACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTTACTATTTACCCTT---------TGGGTCTTGGAGA-----------TT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223259 182 + 83442489 AGGCAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGAATTCAGAAACCTA-GGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTTTTGTTCACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTTACTATTTACCCTT---------TGGGTCTTGGAGAT----------TT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058417 182 + 4267968 AGGCAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCCGGAATTCAGAAACGTA-GGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAGAGACGAGT-------------------------CTTTTGTTCACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTTACTCTTTATGCTT---------TGGGTCTTGGAGAT----------TT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038649 182 - 2193130 AGGCAAAGTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTATTCGGAAACCTA-GGATTCATTTCTCCTTTCA--TCTGTTTCAAG-AGTAGCAAAGATGAGT-------------------------CTTTTGTTCACAAAGTCTTTGAGAGGCACACTTGAGAAG-----------TCTCTTGTTTTTACTCTTTACCCTT---------TGGGTCTTGCAGAC----------TT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30112815 182 - 77216781 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTCTTGTTTACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TTTCCTGTTTTCACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i rheMac8.chr16 C 0 I 5 s macFas5.chr16 28024183 182 - 80997621 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTCTTGTTTACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCCTGTTTTCACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i macFas5.chr16 C 0 I 8 s macNem1.NW_012014910v1 2081900 182 + 10377808 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTCTTGTTTACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCCTGTTTTCACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i macNem1.NW_012014910v1 C 0 I 9 s cerAty1.NW_012006043v1 1966813 182 - 8458610 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTCTTGTTTACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCCTGTTTTCACTCTTTACCCTT---------TGGGTCTTGGAGAC----------tt i cerAty1.NW_012006043v1 C 0 I 868 s chlSab2.chr16 64912000 192 + 75148670 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGACGAGT-------------------------CTCTTGTTTACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTCACTCTTGACCCTT---------TGGGTCTTGGAGACTTCTTCTTCTTT i chlSab2.chr16 C 0 I 1 s manLeu1.NW_012106252v1 2151841 182 + 4244037 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTACCAAAGATGAGT-------------------------CTCTTGTTTACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCCTGTTTTCACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i manLeu1.NW_012106252v1 C 0 I 1 s colAng1.NW_012122154v1 2174929 182 + 4569836 AGGAAAACTAGGCCCTTCACTGAG-CAA-GATGTT-AAGTCCTGGTGTTCAGAAACCTA-CGATTCATTTCTCCCTTCA--TCTGTCTCAAG-AGTAGCAAAGATGAGT-------------------------CTCTTGTTCACAAAGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTCACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i colAng1.NW_012122154v1 C 0 I 2 s calJac3.chr5 46130728 183 - 159171411 AGGCAAAGTAGGCCCTTCACTGAG-CCC-GAGGTT-AAGCCCTGGTGCTCGGAAACCCA-GGATTCATTTCTCCCTTCA--TCCGTCTCAAGCAGTAGCAAAGATGAGT-------------------------CTCTTGTTCACAATATATTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTTACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i calJac3.chr5 C 0 I 8 s saiBol1.JH378271 1840700 181 + 3513951 AGGCAAAGTAGGCTCTTCACTGAG-CCC-GAGGTC-AAGCTCTGGTGCTCAGAAACCCA-GGATTCATTTCTCCCTTCA--TCTATTTCAAGCAGTAGCAAAGATGAGT-------------------------CTTTTGTTCACAATGTCTTTGAGAGATACACCTGAGAAG-------------TCTTGCTTTTACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i saiBol1.JH378271 C 0 I 13 s cebCap1.NW_016107730v1 1889375 192 + 1920343 AGGCAAAGTAGGCTCTTCACTGAG-CCC-GAGGTC-AAGCCCTGGTGCTCAGAAACCCA-GGATTCATTTCTCCCTTCA--TCTGTCTCAAGCAGTAGCAAAGATAAGT-------------------------CTGTTGTTCACAATGTCTTTGAGAGATACCCCTGAGAAG-----------TCTCTTGTTTTTATTCTTTACCCTTTGGGTATTGTGGGTATTGGAGAC----------TT i cebCap1.NW_016107730v1 C 0 I 5 s aotNan1.NW_018502359v1 7005777 183 - 7032639 AGGCAAAGTAGGCTCTTCACTGAG-CCT-GAGGTC-AAGCCCTGGTGCTCAGAAACCCT-GGATTCATTTCTTCCTTCA--TCTGTCTCAAGCAGTAGCAAAGATGAGT-------------------------CTCTTGTTCACAATGTCTTTGAGAGACACACCTGAGAAG-----------TCTCTTGTTTTTACTCTTTACCCTT---------TGGGTCTTGGAGAC----------TT i aotNan1.NW_018502359v1 C 0 I 8 s proCoq1.NW_012135969v1 3011250 193 + 8555354 AGGCAAGGTGGGCCCTTCACTGAGCCAG-GACGTC-AGGCCTTGGTGTTTAGGAACCTC-GGGTTCATTTCTCTCTTCC--TCTGTCTCAAGTAGTAGCTGAGATGAAT-------------------------CTCTTGCTCACAGTGTCTTTGAGAGACAAACATGGGAAGCCACCC-GTAACCTCTGATTTTTCCTCTTTATCTTT---------TGGGTCTTGGAGTC----------A- i proCoq1.NW_012135969v1 I 17 C 0 s otoGar3.GL873537 22833316 197 + 28711273 GGGCAAAGTAGGCAGTGCTCTCAGCCAA-GATGTTAAGGGTTTGGTGTTTAGAAACCTTGGGGTTCATCTCTCTTCTCA--TTGGTCTCAAACAGTAGCAAAGAACAGT-------------------------CTCTTATTCACAATGTCTTTGACAGACAAATCTGGGAAGCCACCCTGTAACCTCTTATTTTTCCTCTTTATCTTT---------AAGGTCTTGGAGGC----------AC i otoGar3.GL873537 C 0 I 6 s canFam3.chr9 21446350 190 + 61074082 AGGCA------GGCCTTTACTAAG-TAAGGATATC-AGGCCTTGGTGTTCAGAAACCTA-GAGTATGTTTCTTCTCTCAGGTCTGTCTCAAGTAGTATCACTGACATACTTTGAGAAAGCATTTGTGTTCTTTGTTTTTGTTCACAATGTCTTTG-----------CAAAAGA-----------TCTCTTGTCTTTCCT----ATCCTT---------TGGGTCTTGGAAGT----------GT i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T a score=408955.000000 s hg38.chr17_GL383564v2_alt 129470 34 + 133151 TT------T--TTTTTTAAAGGAACTGTCAAAATCATTAAAA s panTro5.chr17 16318575 34 + 83181570 TT------T--TTTTTTAAAGGAACTGTCAAAATCATTAAAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223441 34 + 83442489 TT------T--TTTTTTAAAGGAACTGTCAAAATCATTAAAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058599 34 + 4267968 TT------T--TTTTTTAAAGGAACTGTCAAAATCATTAAAA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038831 36 - 2193130 TT------TTGTTTTTTAAAGGAATTGTCAAAATCATTAAAA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113002 34 - 77216781 TT------T--TTTTTTAAAGGAACTGTCAAAATCGTTAAAA i rheMac8.chr16 I 5 C 0 s macFas5.chr16 28024373 34 - 80997621 TT------T--TTTTTTAAAGGAACTGTCAAAATCGTTAAAA i macFas5.chr16 I 8 C 0 s macNem1.NW_012014910v1 2082091 34 + 10377808 TT------T--TTTTTTAAAGGAACTGTCAAAATCGTTAAAA i macNem1.NW_012014910v1 I 9 C 0 s cerAty1.NW_012006043v1 1967863 34 - 8458610 TT------T--TTTTTTAAAGGAACTGTCAAAATCGTTAAAA i cerAty1.NW_012006043v1 I 868 C 0 s chlSab2.chr16 64912193 34 + 75148670 TT------T--TTTTTTAAAGGAACTGTCAAAATCGTTAAAA i chlSab2.chr16 I 1 C 0 s manLeu1.NW_012106252v1 2152024 40 + 4244037 TTAAAAAAT--TTTTTTAAAGGAACTGTCAAAATCGTTAAAA i manLeu1.NW_012106252v1 I 1 C 0 s colAng1.NW_012122154v1 2175113 34 + 4569836 TT------T--TTTTTTAAAGGTACTGTCAAAATCATTAAAA i colAng1.NW_012122154v1 I 2 C 0 s calJac3.chr5 46130919 34 - 159171411 TT------T--TTTTTTAAAGGAGATGTCAAAATCATTAAAA i calJac3.chr5 I 8 C 0 s saiBol1.JH378271 1840894 34 + 3513951 tt------t--ttttttAAAGGAACTGTCAAAATCATTAAAA i saiBol1.JH378271 I 13 C 0 s cebCap1.NW_016107730v1 1889572 34 + 1920343 TC------T--TTTTTTAAAGGAGCTGTCAAAATCATTAAAA i cebCap1.NW_016107730v1 I 5 C 0 s aotNan1.NW_018502359v1 7005968 34 - 7032639 TT------T--GTTTTTAAAGGAGCTGTCAAAATCATTAAAA i aotNan1.NW_018502359v1 I 8 C 0 s proCoq1.NW_012135969v1 3011443 32 + 8555354 --------T--CTTTTTTTAGGAGCTGTCAAGATCTCCAAAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22833519 33 + 28711273 TT------T--TTTTTTCTTGGAGCTGTCAA-ATCTCCAAAG i otoGar3.GL873537 I 6 C 0 s canFam3.chr9 21446540 32 + 61074082 CT------T--TCTTTTAA--GAGCTATTAAAATCATCAAAA i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e micMur3.chr16 35923602 1156 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T a score=148253.000000 s hg38.chr17_GL383564v2_alt 129504 10 + 133151 GCAAGGAAGA s panTro5.chr17 16318609 10 + 83181570 GCAAGGAAGA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223475 10 + 83442489 GCAAGGAAGA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058633 10 + 4267968 GCAAGGAAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038867 10 - 2193130 GCAAGGAAGA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113036 10 - 77216781 GCAAGGAAGA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024407 10 - 80997621 GCAAGGAAGA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082125 10 + 10377808 GCAAGGAAGA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1967897 10 - 8458610 GCAAGGAAGA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912227 10 + 75148670 GCAAGGAAGA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152064 10 + 4244037 GCAAGGAAGA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175147 10 + 4569836 GCAAGGAAGA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130953 10 - 159171411 GCAAGGAAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840928 10 + 3513951 GCAAAGAAGA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889606 10 + 1920343 GCAAAGAATA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006002 10 - 7032639 GCAAAGAAGA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35924758 10 - 65901067 GCAAGGAGGA i micMur3.chr16 I 1156 C 0 s proCoq1.NW_012135969v1 3011475 10 + 8555354 GCAAGGAGGA i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22833552 10 + 28711273 GCTAAGAGGA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21446572 10 + 61074082 TCAAGAGGGA i canFam3.chr9 C 0 I 137 e mm10.chr11 22093389 1992 - 122082543 I e dasNov3.JH570468 451285 724 - 852752 T a score=569060.000000 s hg38.chr17_GL383564v2_alt 129514 48 + 133151 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------AGAGCAGAAAGGCT-GGGTCA s panTro5.chr17 16318619 48 + 83181570 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------AGAGCAGAAAGGCT-GAGTCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223485 48 + 83442489 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------AGAGCAGAAAGGCT-GAGTCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058643 48 + 4267968 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------AGAGCAGAAAGTCT-GAGTCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038877 48 - 2193130 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113046 48 - 77216781 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024417 48 - 80997621 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082135 48 + 10377808 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1967907 48 - 8458610 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912237 48 + 75148670 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGTTTGAGGA-----------------------------AGAGCAGAAAGGCT-GGGTCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152074 48 + 4244037 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175157 48 + 4569836 CCCTG-----------------------------------------------------------------------------------GAGGTCTAATGAATGCTTGAGGA-----------------------------GGAGCAGAAAGGCT-GGGTCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46130963 47 - 159171411 ACCTG-----------------------------------------------------------------------------------GAGGTCTAAT-AATGATTGAGGA-----------------------------GGAGCAGAGAGGCT-GGGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840938 27 + 3513951 ACCT--------------------------------------------------------------------------------------------------------GGA-----------------------------GGAGCAGAGAGGAT-GGGTCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889616 47 + 1920343 ACCTG-----------------------------------------------------------------------------------GAGGCCTAAT-AATGCTTGAGGA-----------------------------GGAGCAGAGAGGCT-GGGTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006012 47 - 7032639 ACCTG-----------------------------------------------------------------------------------GAGGCCTAAT-AATGCTTGAGGA-----------------------------GGAGCAGAGAGGCT-GGGTCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35924768 48 - 65901067 CCCTG-----------------------------------------------------------------------------------GAGGTCTCCTGAATGCTCGAGGA-----------------------------GGAGCAGAGAGTAT-GGGTCA i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3011485 48 + 8555354 CCCTG-----------------------------------------------------------------------------------GAGGTCTCCTGAATGCTTGAGGA-----------------------------GGAGCAGAGAGAAT-GGGTCA i proCoq1.NW_012135969v1 C 0 I 497 s otoGar3.GL873537 22833562 47 + 28711273 -CCTG-----------------------------------------------------------------------------------GAGGCCTCCTGAATGCTTGAGGA-----------------------------GGAGCAGACAAGAT-GCCTCA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21446719 161 + 61074082 ccctgtccacctccccttccactaccccttgttcatttcccagagttaggagtctctcatgttttgtcacccctCAAGAGGGATTCTTGAGGGCCACTGAATGCTTGAAGAGTCAGTGGGTGCAAGGAAAAGATGGAAGCGAAGCAGAGAGGCTAGGGTCA i canFam3.chr9 I 137 C 0 e mm10.chr11 22093389 1992 - 122082543 I e dasNov3.JH570468 451285 724 - 852752 T a score=197076.000000 s hg38.chr17_GL383564v2_alt 129562 17 + 133151 CATGATTTCCAGGAACA s panTro5.chr17 16318667 17 + 83181570 CATGATTTCCAGGAACA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223533 17 + 83442489 CATGATTTCCAGGAACA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058691 17 + 4267968 CATGATTTCCAGGAACA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038925 17 - 2193130 CATACTTTCCAGGGACA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113094 17 - 77216781 CATGCTTTCCAGGGACA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024465 17 - 80997621 CATGCTTTCCAGGGACA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082183 17 + 10377808 CATGCTTTCCAGGGACA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1967955 17 - 8458610 CATGCTTTCCAGGGACA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912285 17 + 75148670 CATGCTTTCCAGGGACA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152122 17 + 4244037 CATGCTTTCCAGGGACA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175205 17 + 4569836 CATGCTTTCCAGGGACA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131010 17 - 159171411 TGTCCTTTCCAGGGACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840965 17 + 3513951 TGTCCTTTCCAGGGACC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889663 17 + 1920343 CGTCCTTTCCAGGGACC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006059 17 - 7032639 CATCCTTTCCAGGGACT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35924816 17 - 65901067 GATGCTTTCCAGGGACA i micMur3.chr16 C 0 I 70 s otoGar3.GL873537 22833609 17 + 28711273 GGGGCTCTCCAGGGATA i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21446880 17 + 61074082 TGTGCTTTCTAGGGACA i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e dasNov3.JH570468 451285 724 - 852752 T a score=606869.000000 s hg38.chr17_GL383564v2_alt 129579 61 + 133151 GGTCAAGCCAATGTTCTA---------TGTTCATGGGATAGCATGGAGGACAGCG--GTGGGCTAAGCTGGC s panTro5.chr17 16318684 61 + 83181570 GGTCAAGCCAATATTCTA---------TGTTCATGGGATAGCATGGAGGATGGCG--GTGGGCTAAGCTGGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223550 61 + 83442489 GGTCAAGCCAATGTTCTA---------TGTTCATGGGATAGCATGGAGGATGGCG--GTGGGCTAAGCTGGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058708 61 + 4267968 GGTCAAGCCAATGTTCTA---------TGCTCATGGGATAGCATGGAGGACGGCG--GTGGGCTGAGCTGGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038942 46 - 2193130 GGTCAAGCCAATGTTCTA---------TGCTCATGTGATAGCATGGAGGATGGCG----------------- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113111 61 - 77216781 GGTCAAGCCAATGTTCTA---------TGCTTATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCGAC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024482 61 - 80997621 GGTCAAGCCAATGTTCTA---------TGCTTATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCGAC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082200 61 + 10377808 GGTCAAGCCAATGTTCTA---------TGCTTATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCAAC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1967972 61 - 8458610 GGTCAAGCCAATGTTCTA---------TGCTTATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCGAC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912302 61 + 75148670 GGTCAAGCCAATGTTCTA---------TGCTTATGGGATAGTGTGGAGGATGGCG--GTGGGCTGAGCCGAC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152139 61 + 4244037 GTTCAAGCCAGTGTTCTA---------TGCTTATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCGAC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175222 61 + 4569836 AGTCAAGCCAATGTTCTA---------TGCTTATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCTAC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131027 61 - 159171411 AGTCAAGCCAATGTTCTA---------TGGTCATGGGATAGCATGGAGGATGGCG--GTGGGCTGAGCCTGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1840982 61 + 3513951 GGTCAAGCCAATGTTCTA---------TGGTCATGGGAAGGCATGGAGGATGGTT--GTGGGCTGAGCCTGT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889680 61 + 1920343 CGTCAAGCTGATGTTCTA---------TGGTTATGGGATACCATGGAGGATGGTG--GTGATATGAGCCTGT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006076 61 - 7032639 GGTCAAGCCAATGTTCTA---------TGGTCATGGGATAGCATGGAGGATGGTG--GTGGGCTGAGCCTGT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833626 63 + 28711273 AGTCGAGCAAATGTTCTAGGGCATGGCTGCTCCTGGGACG-------GGAGGTCA--GTGGGCTAATCCTGT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21446897 72 + 61074082 GGTAGAGCCAGTGGTCTGGGGCAGGGCTGTTCATAGAACAGGATGCAGGACAACGCAGTGCACTGAGCCTAT i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924833 70 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T a score=923639.000000 s hg38.chr17_GL383564v2_alt 129640 69 + 133151 GATATGTGACTTTGATGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC s panTro5.chr17 16318745 69 + 83181570 GATATGTGACTTTGATGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223611 69 + 83442489 GATATGTGACTTTGATGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058769 69 + 4267968 GATATGTGACTTTGATGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2038988 64 - 2193130 -----GTGACTTTGACGAAGTCTTCTGAGAAAGGTAGATCTAGACAGGTTGGTGAGAAGGAAGGACAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113172 69 - 77216781 GGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024543 69 - 80997621 GGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082261 69 + 10377808 GGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968033 69 - 8458610 GGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912363 69 + 75148670 GGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152200 69 + 4244037 GGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGAAGGAGGGACAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175283 69 + 4569836 AGTATGTGACTTTGACGAAGTCTTCTGAGAAAGGTAGGTCTACACAGGCTGGTGAGAAGGAGGAACAGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131088 69 - 159171411 GATATGTGGCTTTGATGAAGTCCTCTGAGAAAGGTAGGTCTAGACAGGTTGGTGAGGAGGAGGGACAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841043 69 + 3513951 GATATGTGACTTTGATGAAGTCCTTTGAGAAAGCTAGGTCTAGACAGGTTGGTGAGGAGGAGGGACTGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889741 69 + 1920343 GATATGTGACTTTGATGAAGCCCTCTGAGAAAGACAGGTCTAGACAGGTTGGTAAGGAGGAGGGACAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006137 69 - 7032639 GATATGTGACTTTGATGAAGTCTGCTGAGAAAGATAGGTCTAGACAGGTTGGTGGGGAGGAGGAATAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35924903 69 - 65901067 GATGTGTGACTTTGATGAAGTCTACTGAGAAAGGTCGATTTAGACAGGCTGGTGAGAAGGAAAGACAGC i micMur3.chr16 I 70 I 80 s otoGar3.GL873537 22833689 69 + 28711273 GATCCGTGACTTTGATGAAGTCTATTGAGAAAGGTTGATCTAGATGGGCTGGTGAGGAGGAAAGACAGC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21446969 67 + 61074082 GACATGTGG-TTTGAC-AAGTCTCCTAAGAAAGGTCAGACTATACAGGGTGGTGAAGAGGAAGGAGAAC i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e dasNov3.JH570468 451285 724 - 852752 T a score=709619.000000 s hg38.chr17_GL383564v2_alt 129709 62 + 133151 CGCCTTAGATCAGGGA-C-----AGACTGtgtgtg---atctttagcaagtgactgaaactttctgaccct s panTro5.chr17 16318814 62 + 83181570 CGCCTTAGATCAGGGA-C-----AGGTTGtgtgtg---atctttagcaagtgactgaaactttctgaccct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223680 62 + 83442489 CGCCTTAGATCAGGGA-C-----AGGTTGtgtgtg---atctttagcaagtgactgaaactttctgaccct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058838 62 + 4267968 CGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atctttagcaagtgactgaaactttctgaccct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039052 62 - 2193130 AGCCTTAGATCAGGGA-C-----AGGTTGtgtgtg---atcttcagcaagtgactgaaactttctgaccct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113241 62 - 77216781 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atcttcagcaagtgactgaaactttctgaccct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024612 62 - 80997621 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atcttcagcaagtgactgaaactttctgaccct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082330 62 + 10377808 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atcttcagcaagtgactgaaactttctgaccct i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968102 62 - 8458610 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atcttcagcaagtgactgaaactttctgaccct i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912432 62 + 75148670 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atcttcagcaagtgactgaaactttctgaccct i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152269 62 + 4244037 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atctttagcaagtgactgaaactttctgaccct i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175352 62 + 4569836 AGCCTTAGATCAGGGA-C-----AGGCTGtgtgtg---atcttcagcaagtgactaaaactttctgaccct i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131157 61 - 159171411 AGTC-TAGATCAGGGA-C-----AGGCTGTGTGTG---GTCTTCAGCAAGTGACTGAAACTTTCTGACCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841112 61 + 3513951 AGTC-TAGATCAGGGA-C-----AGGTTGtgtgtg---gtcttcagcaagtgactgaaactttctgaccct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889810 61 + 1920343 AGTC-TAGATCAGGGA-A-----AGGCTGtgtgtg---gtcttcagcaagtgactgaaactttctgaccct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006206 61 - 7032639 AGTC-TAGATCAGGAA-C-----AGGCTGtgtgtg---gtcttcagcaagtgactgaaactttctgaccct i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833758 69 + 28711273 AGCCCTGGATCAGGGC-CGGGGAAGGTGGCATGTGCGTCCTTTCAGCAAGTAACTGACAC-GTCTCACCCT i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21447036 59 + 61074082 AGCCCTAAAATAGGGAGC-----AAGCTGGGTGGG---ATCTTTAACAAGTGATTTAAACTTTCTGA---- i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T a score=178113.000000 s hg38.chr17_GL383564v2_alt 129771 17 + 133151 ctgcccccatttCTTCA s panTro5.chr17 16318876 17 + 83181570 ctgcccccatttcttca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223742 17 + 83442489 ctgcccccatttcttca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058900 17 + 4267968 ctgcccccatttcttca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039114 17 - 2193130 ctgcccccatttcttca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113303 16 - 77216781 ctg-ccccatttcttca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024674 17 - 80997621 ctgcccccatttcttca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082392 17 + 10377808 ctgcccccatttcttca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968164 17 - 8458610 ctgcgcccatttcttca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912494 17 + 75148670 ctgaccccatttcttca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152331 17 + 4244037 ctgcccccatttcttca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175414 17 + 4569836 ctgcccccatttcttca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131218 17 - 159171411 CTGCTCCCATTTCTTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841173 17 + 3513951 ctgctcccatttcttca i saiBol1.JH378271 C 0 I 2 s cebCap1.NW_016107730v1 1889871 17 + 1920343 ctgcttccATTTCTTCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006267 17 - 7032639 ctgctcccatttcttca i aotNan1.NW_018502359v1 C 0 I 2 s canFam3.chr9 21447095 13 + 61074082 ----TTCCACTTTCTCT i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e otoGar3.GL873537 22833827 0 + 28711273 C a score=37457.000000 s hg38.chr17_GL383564v2_alt 129788 4 + 133151 tttc s panTro5.chr17 16318893 4 + 83181570 tttc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223759 4 + 83442489 tttc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058917 4 + 4267968 tttc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039131 4 - 2193130 tttc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113319 4 - 77216781 tttc i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024691 4 - 80997621 tttC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082409 4 + 10377808 tttc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968181 4 - 8458610 tttC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912511 4 + 75148670 tttC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152348 4 + 4244037 tttC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175431 4 + 4569836 tttC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131235 4 - 159171411 TTTC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107730v1 1889888 4 + 1920343 TTTC i cebCap1.NW_016107730v1 C 0 I 1 s canFam3.chr9 21447108 4 + 61074082 TTCC i canFam3.chr9 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e saiBol1.JH378271 1841190 2 + 3513951 I a score=53127.000000 s hg38.chr17_GL383564v2_alt 129792 22 + 133151 -tttctctttctttctttc-----------tttt s panTro5.chr17 16318897 21 + 83181570 -tttctctttctttctttc------------ttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223763 21 + 83442489 -tttctctttctttctttc------------ttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058921 21 + 4267968 -tttcttttcttttctttc------------ttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039135 33 - 2193130 -ttcttttttctttcttttctttctttctttttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113323 16 - 77216781 -tttttctttctct-----------------ttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024695 16 - 80997621 -TTtttctttcttc-----------------ttt i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082413 16 + 10377808 -tttttctttctcc-----------------ttt i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968185 16 - 8458610 -TTttcctccttcc-----------------ttc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912515 16 + 75148670 -TTTTTCTTTCTCt-----------------ttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152352 16 + 4244037 -TTtttctttctct-----------------ttt i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175435 16 + 4569836 -Tctttctttcttc-----------------ctt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131239 22 - 159171411 Atttttttttttttttttt------------ttt i calJac3.chr5 C 0 I 265 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I a score=25799.000000 s hg38.chr17_GL383564v2_alt 129814 8 + 133151 c-tttcttt s panTro5.chr17 16318918 8 + 83181570 c-tttcttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223784 8 + 83442489 c-tttcttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058942 8 + 4267968 c-tttcttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039168 8 - 2193130 c-tttcttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113339 8 - 77216781 c-tttcttt i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28024711 9 - 80997621 cttttcttt i macFas5.chr16 C 0 M 1490 s macNem1.NW_012014910v1 2082429 8 + 10377808 c-tttcttt i macNem1.NW_012014910v1 C 0 I 4 s cerAty1.NW_012006043v1 1968201 8 - 8458610 c-ttccttc i cerAty1.NW_012006043v1 C 0 I 8 s chlSab2.chr16 64912531 8 + 75148670 c-tttcttt i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152368 2 + 4244037 c-t------ i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175451 8 + 4569836 c-cttccct i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I a score=4500.000000 s hg38.chr17_GL383564v2_alt 129822 1 + 133151 c s panTro5.chr17 16318926 1 + 83181570 c i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223792 1 + 83442489 c i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058950 1 + 4267968 c i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039176 1 - 2193130 c i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113347 1 - 77216781 c i rheMac8.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082441 1 + 10377808 c i macNem1.NW_012014910v1 I 4 C 0 s cerAty1.NW_012006043v1 1968217 1 - 8458610 c i cerAty1.NW_012006043v1 I 8 C 0 s chlSab2.chr16 64912539 1 + 75148670 c i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2175459 1 + 4569836 c i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I e manLeu1.NW_012106252v1 2152370 0 + 4244037 C e macFas5.chr16 28024720 1490 - 80997621 M a score=6767.000000 s hg38.chr17_GL383564v2_alt 129823 3 + 133151 ttt s panTro5.chr17 16318927 3 + 83181570 ttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223793 3 + 83442489 ttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058951 3 + 4267968 ttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039177 3 - 2193130 ttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113348 2 - 77216781 -tt i rheMac8.chr16 C 0 I 23 s macNem1.NW_012014910v1 2082442 2 + 10377808 -tt i macNem1.NW_012014910v1 C 0 I 1 s cerAty1.NW_012006043v1 1968218 2 - 8458610 -tt i cerAty1.NW_012006043v1 C 0 I 1 s colAng1.NW_012122154v1 2175460 3 + 4569836 ctt i colAng1.NW_012122154v1 C 0 I 1 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I e manLeu1.NW_012106252v1 2152370 0 + 4244037 C e chlSab2.chr16 64912540 0 + 75148670 C e macFas5.chr16 28024720 1490 - 80997621 M a score=44378.000000 s hg38.chr17_GL383564v2_alt 129826 53 + 133151 ----------------ctttctttctttctttctttctttc---cttctttctttctttct--ttcctttcttt s panTro5.chr17 16318930 21 + 83181570 ----------------ctttctttctttctttctttc------------------------------------- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223796 33 + 83442489 ----------------ctttctttctttctttctttctttc---tttctttc---------------------- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058954 24 + 4267968 ----------------ctttctttctttctttctttcttt---------------------------------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039180 58 - 2193130 ----------------ctttctttctttctttctttctttctttcttctttctttctttcttctttctttcttt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macNem1.NW_012014910v1 2082445 53 + 10377808 ctttctttctttctttctttctttctttctttctttctttc---tttctttttttt------------------ i macNem1.NW_012014910v1 I 1 C 0 s cerAty1.NW_012006043v1 1968221 52 - 8458610 cttccttccttccttccttcctttctttctttctttctttc---tttctttcttt------------------- i cerAty1.NW_012006043v1 I 1 C 0 s manLeu1.NW_012106252v1 2152370 32 + 4244037 ----------------ctttctttctttctttctttctttc---tttcttt----------------------- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175464 50 + 4569836 cttccttccttccttccttccttccttccttccttccttcc---ttcctcttt--------------------- i colAng1.NW_012122154v1 I 1 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I e chlSab2.chr16 64912540 0 + 75148670 C e rheMac8.chr16 30113350 23 - 77216781 I e macFas5.chr16 28024720 1490 - 80997621 M a score=36461.000000 s hg38.chr17_GL383564v2_alt 129879 39 + 133151 ctttctttctttctttctttctttctttctttctttctt s panTro5.chr17 16318951 13 + 83181570 --------------------------ttctttctttctt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223829 13 + 83442489 --------------------------ttctttctttctt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058978 13 + 4267968 --------------------------ttctttctttctt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039238 39 - 2193130 cttctttctttccttcctttctatcttccttctttcctt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s cerAty1.NW_012006043v1 1968273 39 - 8458610 ctttctttctttctttctttctttctttctttctttctt i cerAty1.NW_012006043v1 C 0 I 7 s manLeu1.NW_012106252v1 2152402 39 + 4244037 ctttctttctttctttctttctttctttctttctttcNN i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175514 39 + 4569836 ctttctttctttctttctttctttctttctttctttctt i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I e macNem1.NW_012014910v1 2082498 0 + 10377808 C e chlSab2.chr16 64912540 0 + 75148670 C e rheMac8.chr16 30113350 23 - 77216781 I e macFas5.chr16 28024720 1490 - 80997621 M a score=37990.000000 s hg38.chr17_GL383564v2_alt 129918 94 + 133151 cttttctttcttctttctttcttttctttctttat-------------------------------------------------ttccttct-----ttcttccttccttccttctttccttctttccttccttcattccttccttcc s panTro5.chr17 16318964 78 + 83181570 cttttctttcttatttctttcttttctttctttat-------------------------------------------------ttcctt---------------------cttccttccttctttccttccttcattccttccttcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223842 77 + 83442489 cttttctttctta---------tttctttctttat-------------------------------------------------ttcctt-------------cttccttccttccttccttctttccttccttcattccttccttcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4058991 49 + 4267968 tctttctttctt--------------tttctttat-------------------------------------------------ttcctt---------------------ctt------ttctttc---------ttccttccttcc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039277 99 - 2193130 cctttcttccttccttccttcttttctttctttct-------------------------------------------------ttctttctttttcttttcttttctttctttctttctttctttctttctttctttctttctttct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s manLeu1.NW_012106252v1 2152441 93 + 4244037 -----------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttcctt--------------------ccttccttccttccttccttccttccttccttccttcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175553 59 + 4569836 --------------------tctttctttctttct-------------------------------------------------ttcttt--------------------tctttctttctttctttctttctttctttctttctttc i colAng1.NW_012122154v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I e macNem1.NW_012014910v1 2082498 0 + 10377808 C e chlSab2.chr16 64912540 0 + 75148670 C e cerAty1.NW_012006043v1 1968312 7 - 8458610 I e rheMac8.chr16 30113350 23 - 77216781 I e macFas5.chr16 28024720 1490 - 80997621 M a score=2376.000000 s hg38.chr17_GL383564v2_alt 130012 3 + 133151 t--tc s panTro5.chr17 16319042 3 + 83181570 t--tc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223919 3 + 83442489 t--tc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059040 3 + 4267968 t--tc i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039376 5 - 2193130 ttctc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28026214 3 - 80997621 t--tt i macFas5.chr16 M 1490 C 0 s manLeu1.NW_012106252v1 2152534 3 + 4244037 t--tc i manLeu1.NW_012106252v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e calJac3.chr5 46131261 265 - 159171411 I e macNem1.NW_012014910v1 2082498 0 + 10377808 C e colAng1.NW_012122154v1 2175612 0 + 4569836 C e chlSab2.chr16 64912540 0 + 75148670 C e cerAty1.NW_012006043v1 1968312 7 - 8458610 I e rheMac8.chr16 30113350 23 - 77216781 I a score=20125.000000 s hg38.chr17_GL383564v2_alt 130015 17 + 133151 tttccttccttccttcc s panTro5.chr17 16319045 17 + 83181570 tttccttccttccttcc i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223922 17 + 83442489 tttccttccttccttcc i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059043 10 + 4267968 tttccttctt------- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039381 17 - 2193130 tttctctctttctttct i nomLeu3.chrUn_GL397460_1 C 0 C 0 s macFas5.chr16 28026217 17 - 80997621 ttttttttttttttttt i macFas5.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152537 17 + 4244037 cttccttctttccttcc i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175612 7 + 4569836 -----ttctttc----- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131526 17 - 159171411 ttttttttttttttttt i calJac3.chr5 I 265 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e macNem1.NW_012014910v1 2082498 0 + 10377808 C e chlSab2.chr16 64912540 0 + 75148670 C e cerAty1.NW_012006043v1 1968312 7 - 8458610 I e rheMac8.chr16 30113350 23 - 77216781 I a score=9528.000000 s hg38.chr17_GL383564v2_alt 130032 4 + 133151 tttt s panTro5.chr17 16319062 4 + 83181570 tttt i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223939 4 + 83442489 tttt i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059053 4 + 4267968 tttt i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039398 4 - 2193130 ttgt i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113373 2 - 77216781 --tt i rheMac8.chr16 I 23 C 0 s macFas5.chr16 28026234 4 - 80997621 tttt i macFas5.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152554 4 + 4244037 tttt i manLeu1.NW_012106252v1 C 0 C 0 s calJac3.chr5 46131543 4 - 159171411 tttt i calJac3.chr5 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e macNem1.NW_012014910v1 2082498 0 + 10377808 C e colAng1.NW_012122154v1 2175619 0 + 4569836 C e chlSab2.chr16 64912540 0 + 75148670 C e cerAty1.NW_012006043v1 1968312 7 - 8458610 I a score=1694.000000 s hg38.chr17_GL383564v2_alt 130036 1 + 133151 t s panTro5.chr17 16319066 1 + 83181570 t i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223943 1 + 83442489 t i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059057 1 + 4267968 t i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039402 1 - 2193130 c i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113375 1 - 77216781 t i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026238 1 - 80997621 t i macFas5.chr16 C 0 C 0 s calJac3.chr5 46131547 1 - 159171411 t i calJac3.chr5 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e aotNan1.NW_018502359v1 7006284 2 - 7032639 I e cebCap1.NW_016107730v1 1889892 1 + 1920343 I e saiBol1.JH378271 1841190 2 + 3513951 I e macNem1.NW_012014910v1 2082498 0 + 10377808 C e colAng1.NW_012122154v1 2175619 0 + 4569836 C e manLeu1.NW_012106252v1 2152558 0 + 4244037 C e chlSab2.chr16 64912540 0 + 75148670 C e cerAty1.NW_012006043v1 1968312 7 - 8458610 I a score=48601.000000 s hg38.chr17_GL383564v2_alt 130037 17 + 133151 tttctttttcttttttt-- s panTro5.chr17 16319067 17 + 83181570 tttctttttcttttttt-- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223944 15 + 83442489 tt--cttttcttttttt-- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059058 17 + 4267968 tttctttttcttttttt-- i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039403 17 - 2193130 ttttttttttttttttt-- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113376 17 - 77216781 ttttttttttttttttt-- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026239 17 - 80997621 ttttttttttttttttt-- i macFas5.chr16 C 0 C 0 s chlSab2.chr16 64912540 16 + 75148670 -tttttttttttttttt-- i chlSab2.chr16 C 0 I 2 s manLeu1.NW_012106252v1 2152558 7 + 4244037 ----------atttttt-- i manLeu1.NW_012106252v1 C 0 I 2 s colAng1.NW_012122154v1 2175619 4 + 4569836 -------------tttT-- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131548 17 - 159171411 --tttttttttttttttga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841192 17 + 3513951 --tcatttttattttttga i saiBol1.JH378271 I 2 C 0 s cebCap1.NW_016107730v1 1889893 17 + 1920343 --tttttttttttttttga i cebCap1.NW_016107730v1 I 1 C 0 s aotNan1.NW_018502359v1 7006286 17 - 7032639 --tcattttttttttttga i aotNan1.NW_018502359v1 I 2 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e macNem1.NW_012014910v1 2082498 0 + 10377808 C e cerAty1.NW_012006043v1 1968312 7 - 8458610 I a score=18347.000000 s hg38.chr17_GL383564v2_alt 130054 2 + 133151 ga s panTro5.chr17 16319084 2 + 83181570 ga i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223959 2 + 83442489 ga i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059075 2 + 4267968 ga i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039420 2 - 2193130 ga i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113393 2 - 77216781 ga i rheMac8.chr16 C 0 I 2 s macFas5.chr16 28026256 2 - 80997621 ga i macFas5.chr16 C 0 C 0 s cerAty1.NW_012006043v1 1968319 2 - 8458610 ga i cerAty1.NW_012006043v1 I 7 C 0 s chlSab2.chr16 64912558 2 + 75148670 ga i chlSab2.chr16 I 2 C 0 s manLeu1.NW_012106252v1 2152567 2 + 4244037 ga i manLeu1.NW_012106252v1 I 2 C 0 s colAng1.NW_012122154v1 2175623 2 + 4569836 ga i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131565 2 - 159171411 ga i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841209 2 + 3513951 ga i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889910 2 + 1920343 ga i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006303 2 - 7032639 gg i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C e macNem1.NW_012014910v1 2082498 0 + 10377808 C a score=2651246.000000 s hg38.chr17_GL383564v2_alt 130056 272 + 133151 cagagtcttcctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgccttagcctcccaagcatttgggattacaggtgtgtgccaccatgcctggcta-ttttttatatttttagtggagatgggtttttgccatgttggccaatctggtctcgaacttctgacttcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaTGGTTC s panTro5.chr17 16319086 272 + 83181570 cagagtcttcctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgccttagcctcccaagcatttgggattacaggtgtgtgccaccatgcctggcta-ttttttgtatttttagtggagatgggtttttgccatgttggccaatctggtctcgaacttctgacttcaggtgatccgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaTGGTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16223961 272 + 83442489 cagagtcttcctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgccttagcctcccaagcatttgggattacaggtgtgtgccaccatgcctggcta-ttttttatatttttagtggagatgggtttttgccatgttggccaatctggtctcgaacttctgacttcaggtgatccgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccaTGGTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059077 273 + 4267968 cagagtcttcctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcattctccacctcccaggttcaagtgattctcttgccttagcctcccaagcatttgggattacaggtgtgtgccaccatgcctggctatttttttgtatttttagtagagatggatttttgccatgttggccaatctggtctcgaacttctgacttcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcgtgagccaTGGTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039422 272 - 2193130 cagagtctccgtctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattataggtgtgcaccaccatgcctgccta-atttttgtatttttagtgaagttgggtttttgccatattggccaatctggtctcgaactcctgacttcaggtgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccatggttc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113397 272 - 77216781 cagagtctatctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctctaccttccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattagagttgtgcaccaccatgcctggcta-atttttgtatttttagtggagatggggtttcgccttgttggccaatctggtctcaaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgttgggattacaggcatgagccatggttc i rheMac8.chr16 I 2 C 0 s macFas5.chr16 28026258 272 - 80997621 cagagtctatctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctctacctcccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattagagttgtgcaccaccatgcctggcta-atttttgtatttttagtggagatggggtttcgccttgttggccaatctggtctcaaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgttgggattacaggcatgagccatggttc i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082498 272 + 10377808 cagagtctatctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctctacctcccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattagagttgtgcaccaccatgcctggcta-atttttgtatttttagtggagatggggtttcgccttgttggccaatctggtctcaaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgttgggattacaggcatgagccatggttc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968321 272 - 8458610 cagagtctatctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctctacctcccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattagagttgtgcaccaccatgcctggcta-atttttgtatttttagtggagatgggatttcgccttgttggccaatctggtctcaaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgttgggattacaggcatgagccatggttc i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912560 272 + 75148670 cagagtctatctctgtcacccaggcaggagtgcagtggtttcatcttggctcactgcaacctctacctcctaggttcaggtgattctcctgcctcagcctgccaaccatttgggattagaggtgtgcaccaccatgcctggcta-atttttgtatttttagtggagatggggtttcgccttgttggccaatctggtctcaaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgtcgggattacaggcatgagccatggttc i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152569 272 + 4244037 cagagtctatctctgtcacccaggcaggagtgcagtggcttgatcttggctcactgcaacctctacctcccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattagagttgtgcaccaccatgcctggcta-atttttgtatttttagtggagatggggtttcgccttgttggccaatctggtctcaaactcctgacctcaggtgatccgcctgcctcggcctcccaaagtgttgggattacaggcatgagccaTGGTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175625 272 + 4569836 cagagtctatctctgccacccaggcacgagtgcagtggcttgatcttggctcactgcaacctctacctcccaggttcaagtgattctcctgcctcagcctcccaagcatttgggattagaggtgtgcacccccatgcctggcta-atttttgtatttttggtggggatggggtttcgccatgttggccaatctggtctcaaactcctgacctcaggtgattcgcctgcctcagcctctcaaagtgttgggattacaggcatgagccatggttc i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131567 271 - 159171411 cagagtctccctttgtcacctaggttggagtacagtgccatgatcttggctcactgcaacctctgcctcccaggttcaagtgattcttctgcctcggcctcccaagtatctgggattacaggcatgtgccaccacacctggcta-atttttgtata-ttaatggagatgggatttcatcctgttgaccagtttggtctcgaactcctgacctcaggtgatttgcctgccttggcctcccaaagtgctgggattacaggcatgagccaTGGTAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841211 272 + 3513951 tggagtctccttttgtcacccaggctggagtacagtgccatgatctttgctcactgcaacctctgcctcccaggttcaagtgattcttctgcctcggcctcccaagtatctgggattacaggcatgtgccaccacacctggcta-atttttgcatatttagtggagttgggatttcatcctgttggccagtttggtctcgaactcctgacctcaggtgattcgcctgccttggcctcccaaagtgctgggattgcaggcatgagccacagtgc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1889912 272 + 1920343 cagagtctccctttgtcacccaggctggagtacagtgccatgatctttgctcactgcaatctctgcctcccaggttcaagtgattcttctgcctcggcctcccaagtatctggaattacaggcatgcgccaccacatctgggta-atttttgtatatttagtggagatgggatttcatcctgttggccagtttggtctcgaacttctgacctcaggtgattcgtctgccttggcctcccaaagtgctgggattgcaggcatgagccacagtgc i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006305 272 - 7032639 cagagtctccctttgtcacccagactggagtacagtgccatgatcttggctcactgcaacctcggcctcccaagttcaagtgattcttctgcctcggcctcccaagtatctgggattacaggcatgtgccaccacacctggcta-atttttgtatatttagtggagatgggatttcatcctattggccagtttggtctcgaactcctgacctcaggtgattcgcctactttggcctcccaaagtgccgggattgcaggcatgagccgcggtgc i aotNan1.NW_018502359v1 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C e otoGar3.GL873537 22833827 0 + 28711273 C a score=28470.000000 s hg38.chr17_GL383564v2_alt 130328 4 + 133151 CTGG s panTro5.chr17 16319358 4 + 83181570 CTGG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224233 4 + 83442489 CTGG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059350 4 + 4267968 CCAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039694 4 - 2193130 ctgg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113669 4 - 77216781 ctgg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026530 4 - 80997621 ctgg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082770 4 + 10377808 ctgg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968593 4 - 8458610 ctgg i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912832 4 + 75148670 ctgg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152841 4 + 4244037 CTGG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175897 4 + 4569836 ctgg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131838 4 - 159171411 TTAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841483 4 + 3513951 tcag i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890184 4 + 1920343 tcag i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006577 4 - 7032639 tcag i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833827 4 + 28711273 CTGC i otoGar3.GL873537 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e dasNov3.JH570468 451285 724 - 852752 T e canFam3.chr9 21447112 0 + 61074082 C a score=48779.000000 s hg38.chr17_GL383564v2_alt 130332 5 + 133151 ACCAT s panTro5.chr17 16319362 5 + 83181570 ACCAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224237 5 + 83442489 ACCAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059354 5 + 4267968 ACCAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039698 5 - 2193130 cacat i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113673 5 - 77216781 ccCAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026534 5 - 80997621 ccCAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082774 5 + 10377808 cccat i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968597 5 - 8458610 ccCAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912836 5 + 75148670 ccCAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152845 5 + 4244037 TCCAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175901 5 + 4569836 ccCAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131842 5 - 159171411 CCCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841487 5 + 3513951 cccat i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890188 5 + 1920343 ccCAT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006581 5 - 7032639 cccat i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833831 5 + 28711273 CCCAT i otoGar3.GL873537 C 0 C 0 s dasNov3.JH570468 450561 5 - 852752 acagt i dasNov3.JH570468 T 724 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I e canFam3.chr9 21447112 0 + 61074082 C a score=27456.000000 s hg38.chr17_GL383564v2_alt 130337 3 + 133151 TTA s panTro5.chr17 16319367 3 + 83181570 TTA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224242 3 + 83442489 TTA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059359 3 + 4267968 TTA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039703 3 - 2193130 tta i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113678 3 - 77216781 TTA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026539 3 - 80997621 TTA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082779 3 + 10377808 tta i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968602 3 - 8458610 TTA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912841 3 + 75148670 TTA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152850 3 + 4244037 TTA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175906 3 + 4569836 TTA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131847 3 - 159171411 TTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841492 3 + 3513951 ttc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890193 3 + 1920343 TTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006586 3 - 7032639 ttc i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833836 3 + 28711273 CTC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21447112 3 + 61074082 TTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 450566 3 - 852752 ttc i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22093389 1992 - 122082543 I e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I a score=114762.000000 s hg38.chr17_GL383564v2_alt 130340 8 + 133151 TTCATTTC s panTro5.chr17 16319370 8 + 83181570 TTCATTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224245 8 + 83442489 TTCATTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059362 8 + 4267968 TTCATTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039706 8 - 2193130 ttcatttc i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113681 8 - 77216781 TTCATTTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026542 8 - 80997621 TTCATTTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082782 8 + 10377808 ttcatttc i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968605 8 - 8458610 TTCATTTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912844 8 + 75148670 TTCATTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152853 8 + 4244037 TTCATTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175909 8 + 4569836 TTCATTTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131850 8 - 159171411 TTCATTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841495 8 + 3513951 ttcatttc i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890196 8 + 1920343 TTCATTTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006589 8 - 7032639 ttcatttc i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833839 8 + 28711273 TTCATCTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22095381 8 - 122082543 tccatctg i mm10.chr11 I 1992 C 0 s canFam3.chr9 21447115 8 + 61074082 TTTACCTA i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 450569 8 - 852752 ttcatcac i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35924972 80 - 65901067 I a score=981443.000000 s hg38.chr17_GL383564v2_alt 130348 72 + 133151 TAATGGTGGAGAAAAATCTCTGCCTCATGAGATTGCTGGTGGTTTTAAGCAAGATCATTGCTGTAAGGTGCA s panTro5.chr17 16319378 72 + 83181570 TAATGGTGGAGAAAAATCTCTGCCTCATGAGATTGCTGGTGGTTTTAAGCAAGATCATTGCTGTAAGGTGCA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224253 72 + 83442489 TAATGGTGGAGAAAAATCTCTGCCTCATGAGATTGCTGGTGGTTTTAAGCAAGATCATTGCTGTAAGGTGCA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059370 72 + 4267968 TAATGGTGGAGAAAAATCTCTGCCTCATGAGATTGCTGGTGGTTTTAAGCAAGATCATTGCTGTAAGGTGCA i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039714 72 - 2193130 tAATGGTGGAGAAAAATCTCTGCCTCATGGGGTTGCTGGTGGTTTTAAGTAAGATCATTGCTGTAAGGTGCA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113689 72 - 77216781 TCATGGTGGAGAAAAATCTCTGCCTCCTGGGATTGCTGGTGGTTTTAAGTAAGATCATTGCTGTGAGGTGCA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026550 72 - 80997621 TCATGGTGGAGAAAAATCTCTGCCTCGTGGGATTGCTGGTGGTTTTAAGTAAGATCATTGCTGTGAGGTGCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082790 72 + 10377808 tcatgatggagaaaaatctctgcctcgtgggattgctggtggttttaagtaagatcattgctgtgaggtgcA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968613 72 - 8458610 TCATGGTGGAGAAAAATCTCTGCCTCGTGGGATTGCTGGTGGTTTTAAGTAAGATCATTGCTGTGAGGTGCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912852 72 + 75148670 TAATGGTGGAGAAAAATCTCTGCCTCGTGGGGTTGCTGGTGGTTTTAAGTAAGATCATTACTGTGAGGTGCA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152861 72 + 4244037 TCATGGTGGAGAAAAATCTCTGCCTCGTGGGATTGCTGGTGGTTTTAAGTAAGATCATTGCTGTGAGGTGCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175917 72 + 4569836 TAATGGTGGAGAAAAATCTCTGCCTCATGGGATTGCTGGTGATTTTAAGTAAGATCGTTGCTGTGAGGTGCA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131858 65 - 159171411 TAATGGTGGAGAAGAATCTCTCCCTCATGGGATTGCTGGTGGTTTTAAGTAAGATCATTAC-------TGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841503 65 + 3513951 taatggtggagaagaatctctgcctcatgggattgctggtggttttaagtaagatcatTAC-------TGCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890204 65 + 1920343 TAATGGTGGAGAAGAATCTCTGCCTCATGGGATTGCTGGTGGCTTTAAGTAAGATCATTAC-------TGCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006597 65 - 7032639 taatggtggagaagaatctctgcctcatgggattgctggtggttttaagtaagatcatTAC-------TGCA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925052 72 - 65901067 TAATGGAGGAGAAGAATCTCTGCCTTGTGGGATTGCTGATGGTTGTAAGTATGATCATTGTTGTAAGGTGCA i micMur3.chr16 I 80 I 219 s otoGar3.GL873537 22833847 72 + 28711273 TCATGGGGGAGAAGAACCTCTTCTTCCTAGGATCGCTGATGGTTTTAAGTAAGATCATTGCCATAAGGTGTA i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22095389 63 - 122082543 tgactggggagaataatctgacccacacaggacggttgtgggCTGTGGCCA---------CTGACAGTTACA i mm10.chr11 C 0 C 0 s canFam3.chr9 21447124 72 + 61074082 AAAGGGGAGAGATGAATTCCTATCTTAAGGGATTGCTGATGGTTTTAAATAGGACCATTGCTGTGAAGTGCA i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 450577 70 - 852752 taatgg-ggagaagaatccctgccttatgggtttgttgtTTATTTTAAATACAATCATTGCTGAAAG-TACA i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3011533 497 + 8555354 I a score=2392140.000000 s hg38.chr17_GL383564v2_alt 130420 214 + 133151 GTCATTT-AAAATCCAGCCCAGTTGTTCTTTTCCCAACTGAGTTCATCACCTCTCCTCTCAATTAATCtctgtatgtctattgttgaacttattattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagaaggcgagatccaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaatccaacccaGGG----CCCTGTATG s panTro5.chr17 16319450 214 + 83181570 GTCATTT-AAAATCCAGCCCAGTTGTTCTTTTCCCAACTGAGTTCATCACCTCTCCTCTCAATTAatctctgtatgtctattgttgaacttattattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagagggcgagatccaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaggg----ccttgtatg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224325 214 + 83442489 GTCATTT-AAAATCCAGCCCAGTTGTTCTTTTCCCAACTGAGTTCATCACCTCTCCTCTCAATTAATCtctgtatgtctattgttgaacttattattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagagggcgagatccaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaGGG----CCTTGTATG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059442 214 + 4267968 GTCATTT-AAAATCCAGCCCAGTTGTTCTTTTCCCAACTGAGTTCATCACCTCTCCTCTCAATTAATCtctgtatgtgtattattgaacttattattgtattgcagtgagtttgtctgcatgct--tatcttcc-cactagatggcgagatccaagagaatggatgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaggg----ccttgtaTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2039786 214 - 2193130 GTCATTT-AAAATCCAGCCCAGTTGTTCTTTTCCCAACTGAGTTCATCATCTCTCCTCTCAATTAAACtctgtatgtctattgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacagcgagatccaagagaatgggtgaataggtcttattcctgt-ggcagc-ctctgaacccaacccaagg----ccttgtaTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113761 214 - 77216781 GTCATTT-AAAATCCAGTCCAGTTGTTCTTCTCCCAACTGAATTCATCACCTCTTCTCTCAATTAATCtctgtatgtctgttgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacaacaagattcaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaGGG----CCTTGTATG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026622 214 - 80997621 GTCATTT-AAAATCCAGTCCAGTTGTTCTTCTCCCAACTGAATTCATCACCTCTTCTCTCAATTAATCtctgtatgtctgttgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacaataagattcaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaGGG----CCTTGTATG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2082862 214 + 10377808 GTCATTT-AAAATCCAGTCCAGTTGTTCTTCTCCCAACTGAATTCATCACCTCTTCTCTCAATTAATCtctgtatgtctgttgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacaataagattcaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaggg----ccttgtatg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968685 214 - 8458610 GTCATTT-AAAATCCAGTCCAGTTGTTCTTCTCCCAACTGAATTCATCACCTCTTCTCTCAATTAATCtctgtatgtctattgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacaacaagattcaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaGGG----CCTTGTATG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64912924 214 + 75148670 GTCATTT-AAAATCCAGTCCAGTTGTTCTTCTCCCAACTGAATTCATCACCTCTTCTCTCAATTAATCtctgtatgcctattgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacagcaagattcaacagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaGGG----CCTTGTATG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2152933 214 + 4244037 GTCATTT-AAAATCTAGTCCAGTTGTTCTTCTCCCAACTGAATTCATcacctcttctctcaattaatctctgtatgtctgttgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-cactagacaacaagattcaagagaatgggtgaataggtcttattcctgt-ggcatc-ctctgaacccaacccaggg----ccttgtatg i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2175989 214 + 4569836 GTCATTT-AAAATCCAGTCCAGTTGTTCTTCTCCCAACTGAATTCATCACCTCTCCTCTCAATTAATCtctgtatgtctattgttgaacttatcattgtattgcagtgagtttgtctgcatgct--tatctgcc-tactagacagcaagatccaagagaatgggtgaataggtcttattcctgt-ggcatc-ctttgaacccaacccaggg----cctggTGTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46131923 203 - 159171411 GTCATTT--AAATCCAGCCCAGTTGTTCCTCTCCCAACTGAGTTCAtcatctctcctcccaattaatctctgtatatctattgttgaacttaacatggtgtggcagtgagtctgtccgcatgct--tatctgcc-cactagacagtgagatccatgagaatgggtgaataggtcttattcctg------------tgagcccaCCCTGGGG----CCTTGTATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841568 207 + 3513951 GTCATTT--AAATCCAGCCCAGTTGTTCCTCTCCCAACTGAGTTCATCATCTCGCCTCCCAATTAATCtctgtatgtctattgtcaaacttatcattgtgtggcagtgagtctgtctgcatgct--tatctgcc-caccagacagcgagatccatgagaatgggtgaataggtcttattcctg------------tgagcccaacccagggcctTCCTTGTATG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890269 200 + 1920343 GCCATTT--AAATCCAGCCCAGTTGTTCCTCTCCCAACTGAGT---TCATCTCTCCTCCCAATTAATCtctgtatgtctattgttgaacttatcattgtgtggcagtgagtctgtctgcatgct--tatctgcc-cactagacggccagatccatgagaatgggtgaataggtcttattccag------------taagcccaacccaggg----ccttgtaTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006662 203 - 7032639 GTCATTT--AAATCCAGCCCAGTTGTTCCTCTCCCAACTGAGTTCATCATCTCTCCTCCCAATTAATCtctgtatgtctattgttgaacttaccattgtgtggcagtgagtctgtctgcatgct--tatctgcc-cactagacagcgagatccatgagaatgggtgaataggtcttaatcctg------------tgagcccaacccaggg----ccttgtaTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22833919 196 + 28711273 GTTGTCT-AAAATGCAGTCCAGCTGTGCccctcctgactgagttcaccccagctctcctctactaatccctgcatgtctgtggttgaacttgtcattttgtt------agtctgtccac-------------ct-cactagctggtgaggtccaggacagtgggtgagtaggtgttatccacgtgggcatc-ctctgta--caacccaggg----ccttgtaca i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22095452 156 - 122082543 ---GTTTGGAAATCTCATCCA-------------CAACTGAGCTCCTTA--------------------CTGTGTGTCT-CTGTGGAGCTTCTCATGACAGTGCAGTCAGGTCTGCTCTTGACT--TGTTTGCC-CGCAGCACAGTAGG--------------------CAGTCATACTCATGTAGACATC----TGCGCCTAGGCCAGGA----GAAGAGGTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21447196 210 + 61074082 ATCATTT-TAAATCCACCCCAGATAGCCCCTCTCCCACAGAGCTCACCACTGCTCCCCTCTACTAATCCCTATAAGTCTACTGTTGACTTTACCATGGCTTTTCAATGAGTTTACCTGAATATTGACAGTTGCTGGGCTGGAGGGTGAGATCTGTGGGAATGGGTGAGTAGGTCCTATTCAAGTAGGCATCCCTGTGTGCCC-------------CCTGGTACA i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 450647 207 - 852752 GTCATTT-AAAATGCAGTGCAGATGCCACCTCCTTCCCAGAGCACATCACTGCTCTCCTCTACT-ATCTCTGTGCATCTATTCTTGAGCTAATTATTGTTATGCCACAAgcttgcttgcatgtt--tgtctgct-cactaca---tgagaaccatgagaatgggaaagctggtcttat--atg--ggcatc-ctctgtgcccagcccagga----cttaccaca i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3011533 497 + 8555354 I e micMur3.chr16 35925124 219 - 65901067 I a score=21000.000000 s hg38.chr17_GL383564v2_alt 130634 1 + 133151 G s panTro5.chr17 16319664 1 + 83181570 g i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224539 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059656 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040000 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113975 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026836 1 - 80997621 G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083076 1 + 10377808 g i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968899 1 - 8458610 G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913138 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153147 1 + 4244037 g i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176203 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132126 1 - 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841775 1 + 3513951 G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890469 1 + 1920343 G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006865 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925343 1 - 65901067 G i micMur3.chr16 I 219 C 0 s otoGar3.GL873537 22834115 1 + 28711273 G i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22095608 1 - 122082543 G i mm10.chr11 C 0 C 0 s canFam3.chr9 21447406 1 + 61074082 G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 450854 1 - 852752 g i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3011533 497 + 8555354 I a score=9725620.000000 s hg38.chr17_GL383564v2_alt 130635 550 + 133151 AAGACTAGAAGGTGGATAAATCATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATTATCCAGTTT-----------------------------------------GGAGGTGA----GGATGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACACCTTCTTTACGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGGGTATAAAAGTGAGGGCCTCAGGGAGCTGTCACAGTGAGGCAGCA-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGCAGTTGCTCTTCTAGGAAATGCTTCTCCGTGCCAGCCACCTCTCTCTGCTCCACTGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGACAGCTGTGGATCATCCAGCTGTGGGCCACAGTGCCGTC s panTro5.chr17 16319665 550 + 83181570 aagactagaaggtggataaatCATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATTATCCAGTTT-----------------------------------------GGAGGTGA----GGATGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTACGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGAGTATAAAAGTGAGGGCCTCAGGGAGCTGTCACAGTGAGGCAGCA-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCATGCCAGCCACCTCTCTCTGCTCCACTGAGGTGAGCTGTGGGGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGACAGCTGTGGATCATCCAGCTGTGGGCCACAGTGCCGTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16224540 550 + 83442489 AAGACTAGAAGGTGGATAAATCATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATTATCCAGTTT-----------------------------------------GGAGGTGA----GGATGCTTCTTCCAAGATTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTACGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGAGTATAAAAGTGAGGGCCTCAGGGAGCTGTCACAGTGAGGCAGCA-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCATGCCAGCCACCTCTCTCTGCTCCACTGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGACAGCTGTGGATCATCCAGCTGTGGGCCACAGTGCCGTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4059657 575 + 4267968 AAGACTAGAAGGTGGATAAATCATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATTATCCAGTTTGGAGGTGAGGATGCTTCTTCCAAGACTACCTGTAGCTCTGAGGAGGTGA----GGATGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTACGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCTTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCACGAGT----CCAAACAGAACACGCCAGTGAGGGGGTATAAAAGTGAGGGCCTCAGGGAGCTGTCACAGTCAGGCAGTG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCACCTCTCTCTGCTCCACTGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGA---------------CAGCTGTGGGCCACAGTGCTGTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040001 550 - 2193130 AAGACTAGAAGGTGGATAAATCATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATACCGATTATCCAGTTT-----------------------------------------GGAGGTGA----GGATCCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTATGGGTAGGTAAACAGCTTCCAGATCAACAAATGGTGGTATAATAAGATGTTCCTCTGAAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGTAGTC---CCAAACAGAACACACCAGTGAGGGGGTATAAAAGTGAGGGCCTCAGGGAGCTGTCACAGTCAGGTAGCG-ACCTCTCTGCACTCAGCACAAGGAAGCACGGCCACCTCCATCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATTTCTCTCTGCTCCACTGAGGTGAGCTGTGGAGGCCCTATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCGAGACAGCTGTGGATCATCCAGCTGTGGGCCACAGTGCTGTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30113976 549 - 77216781 AAGACTAGAAGGTGGATAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAA-TTAGCAC----ATCAATAAATAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGGATATAAAAGTGAGGGCGTCAGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGATCATCCAGCTGTGGACCACAGTGCTGTC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28026837 550 - 80997621 AAGACTAGAAGGTGGATAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGCTTCTTCCAAGACTATC-----TGTAGCTCTGAGGATCCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCTCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGGATATAAAAGTGAGGGCGTCAGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGATCATCCAGCTGTGGACCACAGTGCTGTC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083077 555 + 10377808 aagactagaaggtggataaatTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGCTTCTTCCAAGACTATCTGTAGTGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTCCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCTCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGGATATAAAAGTGAGGGCGTCAGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGATCATCCAGCTGTGGACCACAGTGCTGTC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1968900 550 - 8458610 AAGACTAGAAGGTGGATAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGTTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACACCAGTGAGGGGATATAAAAGTGAGGGCGTCAGAGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTGCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGTGGATCATCCAGCTGTGGACCACAGTGCTGTC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913139 550 + 75148670 AAGACTAGAAGTTGGATAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAGTAAATAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGGATATAAAAGTGAGGGCCTCAGGAAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTTCTCTGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGATCATCCAGCTGTGGACCACAGTGCTGTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153148 550 + 4244037 aagactagaaggtggataaatTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACACCAGTGAGGGGATATAAAAGTGAGGGCGTCAGGGAGCTGTCACAGTCAGGAAGCG-ACCTCTCAGCACTCAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTGCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGATCATCCAGCTGTGGACCACAGTGCTGTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176204 550 + 4569836 AAGACTAGAAGGTGGATAATTTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAACATAGATCATCCAGTTT-----------------------------------------GGAGGTGA----GGGTGCTTCTTCCAAGACTACT-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAATAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAAAGGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAACAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACACGCCAGTGAGGGGATATAAAAGTGAGGGCCTCAGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTTAGCACAAGGAAGCACGGCCACCTCCACCATGTCTGGTAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGAGGTGAGCTGTGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGATCATCCAGCTGTGGGCCACAGTGCTGTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132127 549 - 159171411 AAGACTAGAAGATGGGTAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATCATCCAGCTT-----------------------------------------GGAGGTGA----GGATGCTTCTTCCAAGACTACC-----TATAGCTCTGAGGATTCCAAATTTGGCAC----ATCAATAAACAAACAGTTTCCTTATGGGTAGATAAACAGCTTCCAGATCAACAAACAGTGGTATAATAAGATGTTCCTCCGCAAAC-TGGCCCGA-CAGCAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACATGCCAGTGAGGGGGTATAAAAGCGAGGGCCTCGGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCACAAGAAAGCACGGCCACCTCCATCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCTACTGATGTGAGCTGCAGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGTCAGACGTGGCAGCTGGTGACTTGTGAAGATAGCTGTGGATCATCCAGCTGCGGGCCACAGTGCTGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1841776 547 + 3513951 AAGACGAGAAGGTAGATAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATCATCCAGCTT-----------------------------------------GGAGGTGA----GGATGCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAACAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAATAGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCTCAA-CAGCAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAAC--GTCAGTGAGGGGGTATAAAAGTGAGGGCCTCGGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCGCAAGGAAGCACGGCCACCTCCACCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCCACTGATGTGAGCTGCAGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACGTGGCAGCTGGTGACTTGTGAAGATAGCTGTGGATCATCCAGCTGCGGGCCACAGTGCTGTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1890470 549 + 1920343 AAGACTAGAAGGTGGATAAATTATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATCATCCAGCTT-----------------------------------------GGAGGTGA----GGATGCTTCTTCCAAGACTATC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAACAAACAGCTTCTTTATGTGTAGATAAGCAGCTTCCAGGTCAACAAACAGTGGTATAATAAGATGTTCCTCTACAAAC-TGGCCCAA-CAGCAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACATGCCAGTGAGGGGGTATAAAAGTGAGGGCCTCGGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCTCAAGGAAGCACAGCCACCTCCACCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATCTCTCTCTGCTCCACCGATGTGAGCTGCAGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACGTGGCAGCTGGTGACTTGTGAAGATAGCTGTGGATCATCCAGCTGCGGGCCACAGTGCTGTC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7006866 546 - 7032639 AAGACTAGAAGGTGGATAAATGATAAGTTTCATTCTTCTTTCCCTGTTCACAATGCTCAGAAATATAGATCATCCAGCTT-----------------------------------------GGAGGTGA----GAATCCTTCTTCCAAGACTACC-----TGTAGCTCTGAGGATTCCAAATTTAGCAC----ATCAATAAACAAACAGCTTCTTTATGGGTAGATAAACAGCTTCCAGATCAACAAACAGTGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAA----CAATGAGGAAAAGATGCAGGAGTC---CCAAACAGAACATGCCAGTGAGGGGGTATAAAAGTGAGGGCCTTGGGGAGCTGTCACAGTCAGGCAGCG-ACCTCTCAGCACTCAGCGCAAGGAAGCACGGCCACCTCCACCATGTCTGGCAGTTGCTGTTCTAGGAAATGCTTCTCCGTGCCAGCCATGTCTCTCTGCTCCACCGATGTGAGCTGCGGAGGCCCCATCTGCCTGCCCAGTTCCTGCCAGAGCCAGACGTGGCAGCTGGTGACTTGTGAAGATAGCTGTGGATCAACCAGCTGCGGGCCACAGTGCTGTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925344 545 - 65901067 AAGACTAGAAGGTGGCTAAATGATCAGTTTCATTCTTCTTTCCCTGTTCCTGATGCTCAGAAATATAGATCATCTAGCTT-----------------------------------------GGAGGGGA----CAGTGCTTATTCTAAGGCTACC-----TGTAGCTCTGAGGACTCCAGATTTAGCAA----GTCAATAAATAAAC-GCTGCTTTATGAGTAGACAAACAGCTTGCAGATCAACAAACATTGGTATAATAAGGTGTTCCTCCACACAC-TGGCCCAAACAGCAATGAGGAAAAGATGCAGGGGCC---CAAAACAGCATGGGCCAGCGAGGGCGTATAAAAGTGAGGGTCTCAGAGAGCTGTCACAGTCAGGCAGCC-ACCTCTTGGGACTCA---CAAGGAAGCACAGG-ACCTCCACCATGTCTGGCAGCTGCTGTTCCAGGAAATGCCCGTCCGTGCCGGCCATCTCGCTGTGCTCCACCGAGGTGAGCTGTGGGGTGCCCGTCTGCTTGCCCAGTTCCTGCCGGAGTCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGGTCACCCAGCTGCAATCCACAATGCTGTC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3012030 545 + 8555354 AAGAATAGAAGGTGGATAAATTGTCAGTTACATTCTTCTTTCCCTGTTCGTGATGCTCAGAAATATAGATCATCCAGCTT-----------------------------------------GGAGGTCA----CTGTGCTTATTCTAAGGCTA-C-----TGTAGCTCTGAGGACTCCAAATTTAGCAA----GTCAATAAATAAAC-GCTCCTTTATGAGTAGACAAATAGCCTGCAGATCAACAAACATGGGTATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAACAGCAATGAGGAAAAGATGCAGGGGCC---CAAAACAGCATGTGCCAGTGAGGGGGTATAAAAGTGAGGGTCTCAGAGAGCTGTCATAGTCAGGCAGCC-ACCTCTCGGCACTCA---CAAGGAAGCACAAGCACCTCCACCATGTCTGGCAGCTGCTGTTCCAGGAAATGCCCGTCCGTGCCAGCCATCTCGCTCTGCTCCTCTGAGGTGAGCTGTGGAAGGCCCGTCTGCTTGCCCAGTTCCTGCCGGAGCCAGACATGGCAGCTGGTGACTTGTCAAGATAGCTGCGGGTCACCTAGCTGCGATCCACAATGCTGTC i proCoq1.NW_012135969v1 I 497 C 0 s otoGar3.GL873537 22834116 513 + 28711273 AAGACTAGAAGGTGGGTAAATCATAAGTTTCATTC-------------------------------ATATCACC--GCAT-----------------------------------------GGAGGTGA----TAATGGTTATCCTAAGACTACC-----TGTAGCTCTGAGGACTCCAAATTTAGCAA----GTCAATAAATAAAC-ACTTCTTTATGAGCAGACAAACAGCTTCCAGATCAACAAACGTTGGCATAATAAGATGTTCCTCTACAAAC-TGCCCTAAACTGCAATGAGGAAGAGATGCAGGGGCC---CCAAACAGCATGTGTCAGCGAGGGAGTATAAAAGCAAGGGCCTCGGAGAGCTGTCACAGTCAGGTTACC-AGCTCTCGGCGCTCA---CAAGGAAGCACAGGCACCCCCACCATGTCTGGTAGCTGCTATTCCAGGAAATGCCCCTCCGTGCCTGCCCTCTCTCTCTGCTCCACCGGGGTGAGCTGTGGAGGGCCTGTCTGCTTGCCTAGTTCCTGCCAGAGCCAGACATGGCAGCTGGTGACATGTCAAGATAGCTGTGGATCATCCAGCTGCGGTCCGCAATGCTGTC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22095609 536 - 122082543 AAGGGTGGATGGCAGCTAAATTATAGGCTCCTTTGTTCTTTCCTTCTTCAGGATGCTTGG--GCGGAGAGCATCCATGGT-----------------------------------------GAAGGTGATGATGGATGCTCATCCCGGGACTACC-----TGTAGCTTTGAGGATTCCATATTTAGCATGCAAGTCAGTAAATAAACATCTTCTTTATGGGCAGACAAACAACTTCTAGATCAACACATGTTGGCATAATAAGATGTTCCTCCAGAAACAGGGCCCAAACAACAATGAGGAAAAGATGCAGGGGGCCCGCCAAACAGCATGCGCCAGTGAGGGAGTATAAAA------------GGGAGATACCACACTCAGGCA------------GCACTCACTCCAAGACAG-AGAGCTATCTCCACCATGTCTGGCTGCTGTTGTTCTAGGAAATGCCCCTCCCTACCTGCCATCTCTCTCTGCTCTACTGAGGTGAGCTGTGGAGGGCCCGTCTGCCTACCCAGCTCCTGCCGGAGCCAGACGTGGCAGCTGGTGACTTGCGAGGACAGCTGTGGGTCATCCGGCTGTGGCTCACAATGCTGTC i mm10.chr11 C 0 I 4 s canFam3.chr9 21447407 548 + 61074082 AGGACTAGATGATGGATAAATTATAAGTTCCTTTCTTCTTCCTCTGTTCATGACGCTCAGAAACACAGATCATTCAATTT-----------------------------------------GAAGGCAA----TGATGCTTGTTCCAAGATGACT-----TGTTGCTCCGAGGATTCCAGATTTAGTAA----GTCAATAAACAAAGAGCTTCTTTATGGGTAGATAAACAACTTCCAGATCAACAAACCTTGGCATAATAAGATGTTCCTCTGAAAAC-TGGACCAAGCAGCAATAAGGAAAAGATGCAGGGGCT---CCAAACAGCACATGTCAGTGAGGGGGTATAAAAGTGAGGGCCTTGGAGAGCTGTCCCAGTCAGGTAGCACCCCTCTTAGCACTCA---CAAGGGAGCAGAGGCATCTCTACCATGTCTGGAAACTGCTGTTCTAGGAAATGCCCGTCTGTGCCAGGCATCTCTCTCTGCTCCACTGAGGTGAGCTGCGGAGGACCTGTCTGTTTGCCCAGTTCCTGCCAGAGCCAGACATGGCAACTGGTGACTTGCCAAGGCAGCTGTGAATCATCTAGCTGTGGCCCACAGTGCTGTC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 450855 545 - 852752 agGACTAGAAGGTGGATACAATTAAAGTTTCTTTTTTCTTCTCCTTGTTGTGATGCTCAAAAAC--AGATCACCCAGCTT-----------------------------------------GTAGGTGA----TGAAGCTTATTCCACAGTGACC-----TATAGCTCCAAAGATTCCAAATTAAGCAG----GTCAGTAAATAAACAGCTTCTTTATGGGTACATAAACAACTTCCAGATCAACAAACGATGGCATAATAAGATGTTCCTCTGCAAAC-TGGCCCAAATGGCAATGAGGAAAAGATGCATGGGTC---CAAAACAGTACGCACCAGGGAAGGGGTATAAAAGCAAGGGCCTCAGAGAGCTGTCATAGTCAGGTAGCT-CATTCTCAGCACTCA---CAAGGAAGCCAAGGTATCTCCACCATGTCTGGTAACTGCTGTTCTAGGAAATGCCCCTCCGTGCCAGCCATCTCTCTCTGCTCCACCAAGGTGAGCTGCGGAAGGCCCATCTGCTTGCCCAGTACCTGCCAGAGCCAGACATGGCAACTAGTCACTTGTCAAGATACCTGCAGATCATCTAGCTGTGGCTCACAATGCTGTC i dasNov3.JH570468 C 0 C 0 a score=79490.000000 s hg38.chr17_GL383564v2_alt 131185 4 + 133151 AGCC s panTro5.chr17 16320215 4 + 83181570 AGCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225090 4 + 83442489 AGCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060232 4 + 4267968 AGCC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040551 4 - 2193130 AGCC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114525 4 - 77216781 AGCC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027387 4 - 80997621 AGCC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083632 4 + 10377808 AGCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969450 4 - 8458610 AGCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913689 4 + 75148670 AGCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153698 4 + 4244037 AGCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176754 4 + 4569836 AGCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132676 4 - 159171411 AGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842323 4 + 3513951 AACC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891019 4 + 1920343 AGCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007412 4 - 7032639 AGCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925889 4 - 65901067 AGCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3012575 4 + 8555354 AGCC i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834629 4 + 28711273 AGCC i otoGar3.GL873537 C 0 C 0 s canFam3.chr9 21447955 4 + 61074082 AGCC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451400 4 - 852752 AGCC i dasNov3.JH570468 C 0 C 0 e mm10.chr11 22096145 4 - 122082543 I a score=189636.000000 s hg38.chr17_GL383564v2_alt 131189 10 + 133151 CTCCTGTCCT s panTro5.chr17 16320219 10 + 83181570 CTCCTGTCCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225094 10 + 83442489 CTCCTGTCCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060236 10 + 4267968 CTCCTGTCCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040555 10 - 2193130 CTCCTGTCCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114529 10 - 77216781 CTCCTGTCCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027391 10 - 80997621 CTCCTGTCCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083636 10 + 10377808 CTCCTGTCCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969454 10 - 8458610 CTCCTGTCCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913693 10 + 75148670 CTCCTGTCCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153702 10 + 4244037 CTCCTGTCCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176758 10 + 4569836 CTCCTGTCCT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132680 10 - 159171411 CTCCTGTCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842327 10 + 3513951 CTCCTGTCCC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891023 10 + 1920343 CTCCTGTCCC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007416 10 - 7032639 CTCCTGTCCC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925893 10 - 65901067 CTCCTGTCCC i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3012579 10 + 8555354 CTCCTGTCCC i proCoq1.NW_012135969v1 C 0 T 2 s otoGar3.GL873537 22834633 10 + 28711273 CTCCTGTCCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096149 10 - 122082543 TTCGTGTTCC i mm10.chr11 I 4 C 0 s canFam3.chr9 21447959 10 + 61074082 CTCCTGTGCT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451404 10 - 852752 CGCCTGTTCT i dasNov3.JH570468 C 0 C 0 a score=199933.000000 s hg38.chr17_GL383564v2_alt 131199 11 + 133151 GTGAGTAGCTG s panTro5.chr17 16320229 11 + 83181570 GTGAGTAGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225104 11 + 83442489 GTGAGTAGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060246 11 + 4267968 GTGAGTAGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040565 11 - 2193130 GTGAGCAGCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114539 11 - 77216781 GTGAACAGCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027401 11 - 80997621 GTGAACAGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083646 11 + 10377808 GTGAACAGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969464 11 - 8458610 GTGAACAGCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913703 11 + 75148670 GTGAACAGCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153712 11 + 4244037 GTGAACAGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176768 11 + 4569836 GTGAGCAGCTG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132690 11 - 159171411 GTGAGCAGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842337 11 + 3513951 GTGAGCAGCTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891033 11 + 1920343 GTGAGCAGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007426 11 - 7032639 GTGAGCAGCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925903 11 - 65901067 GTGAGCAGCTG i micMur3.chr16 C 0 I 1 s otoGar3.GL873537 22834643 11 + 28711273 GTGAGCAGCTG i otoGar3.GL873537 C 0 I 60 s mm10.chr11 22096159 11 - 122082543 GTGAGCAGTTG i mm10.chr11 C 0 I 1 s canFam3.chr9 21447969 11 + 61074082 GTGAGCAGCTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451414 11 - 852752 GTGAGCAGCTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3012589 2 + 8555354 T a score=38430.000000 s hg38.chr17_GL383564v2_alt 131210 3 + 133151 TGC s panTro5.chr17 16320240 3 + 83181570 TGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225115 3 + 83442489 TGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060257 3 + 4267968 TGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040576 3 - 2193130 TGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114550 3 - 77216781 TGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027412 3 - 80997621 TGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083657 3 + 10377808 TGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969475 3 - 8458610 TGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913714 3 + 75148670 TGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153723 3 + 4244037 TGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176779 3 + 4569836 TGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132701 3 - 159171411 TGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842348 3 + 3513951 TGC i saiBol1.JH378271 C 0 I 2 s cebCap1.NW_016107730v1 1891044 3 + 1920343 TGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007437 3 - 7032639 TGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925915 2 - 65901067 TG- i micMur3.chr16 I 1 C 0 s otoGar3.GL873537 22834714 3 + 28711273 TGC i otoGar3.GL873537 I 60 C 0 s mm10.chr11 22096171 2 - 122082543 TG- i mm10.chr11 I 1 C 0 s canFam3.chr9 21447980 3 + 61074082 TGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451425 3 - 852752 CGC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3012589 2 + 8555354 T a score=34200.000000 s hg38.chr17_GL383564v2_alt 131213 2 + 133151 CC s panTro5.chr17 16320243 2 + 83181570 CC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225118 2 + 83442489 CC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060260 2 + 4267968 CC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040579 2 - 2193130 CC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114553 2 - 77216781 CC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027415 2 - 80997621 CC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083660 2 + 10377808 CC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969478 2 - 8458610 CC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913717 2 + 75148670 CC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153726 2 + 4244037 CC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176782 2 + 4569836 CC i colAng1.NW_012122154v1 C 0 C 0 s cebCap1.NW_016107730v1 1891047 2 + 1920343 CC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007440 2 - 7032639 CC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925917 2 - 65901067 CC i micMur3.chr16 C 0 C 0 s otoGar3.GL873537 22834717 2 + 28711273 CC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096173 2 - 122082543 CC i mm10.chr11 C 0 C 0 s canFam3.chr9 21447983 2 + 61074082 CC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451428 2 - 852752 CC i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3012589 2 + 8555354 T e saiBol1.JH378271 1842351 2 + 3513951 I e calJac3.chr5 46132704 0 - 159171411 C a score=204954.000000 s hg38.chr17_GL383564v2_alt 131215 13 + 133151 AACCCCTGTGCTG s panTro5.chr17 16320245 13 + 83181570 AACCCCTGTGCTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225120 13 + 83442489 AACCCCTGTGCTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060262 12 + 4267968 AA-CCCTGTGCTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040581 13 - 2193130 AACCCCTGTGCTG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114555 13 - 77216781 AACCCCTGTGCTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027417 13 - 80997621 AACCCCTGTGCTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083662 13 + 10377808 AACCCCTGTGCTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969480 13 - 8458610 AACCCCTGTGCTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913719 13 + 75148670 AACCCCTGTGCTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153728 13 + 4244037 AACCCCTGTGCTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176784 13 + 4569836 AACCCGTGTGCTG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1842353 13 + 3513951 AACCCCTGTGCTG i saiBol1.JH378271 I 2 C 0 s cebCap1.NW_016107730v1 1891049 13 + 1920343 AACCCCTGTGCTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007442 13 - 7032639 AACCCCTGTGCTG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925919 13 - 65901067 AACCCCTGTGCTG i micMur3.chr16 C 0 T 29 s otoGar3.GL873537 22834719 13 + 28711273 AACCCCTGTGCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096175 13 - 122082543 AGCCTGTGTGCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21447985 13 + 61074082 AACCTGTGTGCTG i canFam3.chr9 C 0 I 15 s dasNov3.JH570468 451430 13 - 852752 AACCTGTGTGCTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3012589 2 + 8555354 T e calJac3.chr5 46132704 0 - 159171411 C a score=159200.000000 s hg38.chr17_GL383564v2_alt 131228 17 + 133151 TGATCCT---------------------------------------------GTCATTTGTG s panTro5.chr17 16320258 17 + 83181570 TGATCCT---------------------------------------------ATCATTTGTG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225133 17 + 83442489 TGATCCT---------------------------------------------ATCATTTGTG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060274 17 + 4267968 TGAGCCT---------------------------------------------GTCATTTGTG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040594 13 - 2193130 CGAGCCT---------------------------------------------GTCATT---- i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114568 17 - 77216781 TGAGCCT---------------------------------------------GCCATTTGTG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027430 17 - 80997621 TGAGCCT---------------------------------------------GCCATTTGTG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083675 17 + 10377808 TGAGCCT---------------------------------------------GCCATTTGTG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969493 17 - 8458610 TGAGCCT---------------------------------------------GCCATTTGTG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913732 17 + 75148670 TGAGCCT---------------------------------------------GCCATTTGTG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153741 17 + 4244037 TGAGCCT---------------------------------------------GCCATTTGTG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176797 17 + 4569836 TGAGCCT---------------------------------------------GCCATTTGTG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1842366 17 + 3513951 TGAGCCT---------------------------------------------GCTGCGTGTG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891062 17 + 1920343 TGAGCCT---------------------------------------------GCCATGTGTG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007455 17 - 7032639 TGAGCCT---------------------------------------------GCCACGTGTG i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22834732 17 + 28711273 TGAGCCC---------------------------------------------ACCGTTTGTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096188 17 - 122082543 CGAGGCT---------------------------------------------ACCATTTGTG i mm10.chr11 C 0 T 60 s canFam3.chr9 21448013 62 + 61074082 TGAGCCTTCCTGTGCTGTGAGCAGCTGTGCCCAACCTGTGTGCTATGAAGCCACCATCTGTG i canFam3.chr9 I 15 C 0 s dasNov3.JH570468 451443 17 - 852752 TGAGGCC---------------------------------------------ACCACCTGTG i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3012589 2 + 8555354 T e micMur3.chr16 35925932 29 - 65901067 T e calJac3.chr5 46132704 0 - 159171411 C a score=152498.000000 s hg38.chr17_GL383564v2_alt 131245 12 + 133151 AGCCTTCTTGCT s panTro5.chr17 16320275 12 + 83181570 AGCCTTCTTGCT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225150 12 + 83442489 AGCCTTCTTGCT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060291 12 + 4267968 AGCCTTCTTGCT i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30114585 12 - 77216781 AGCCTTCTTGCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027447 12 - 80997621 AGCCTTCTTGCT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083692 12 + 10377808 AGCCTTCTTGCT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969510 12 - 8458610 AGCCTTCTTGCT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913749 12 + 75148670 AGCCTTCTTGCT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153758 12 + 4244037 AGCCTTCTTGCT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176814 12 + 4569836 AGCCTTCTTGCT i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1842383 12 + 3513951 AGCCTTCTTGCT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891079 12 + 1920343 AGCCTTCTTGCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007472 12 - 7032639 AGCCTTCTTGCT i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22834749 12 + 28711273 AACCTTCTTGCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096145 12 - 122082543 AGCCTTCGTGTT i mm10.chr11 T 60 C 0 s canFam3.chr9 21448075 12 + 61074082 AACCTTCCTGTG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451460 12 - 852752 AGCCCTCCTGTT i dasNov3.JH570468 C 0 C 0 e proCoq1.NW_012135969v1 3012589 2 + 8555354 T e micMur3.chr16 35925932 29 - 65901067 T e calJac3.chr5 46132704 0 - 159171411 C e nomLeu3.chrUn_GL397460_1 2040607 0 - 2193130 C a score=159290.000000 s hg38.chr17_GL383564v2_alt 131257 11 + 133151 CCGTGAGCAGC s panTro5.chr17 16320287 11 + 83181570 CCGTGAGCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225162 11 + 83442489 CCGTGAGCAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060303 11 + 4267968 CCTTGAGCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30114597 11 - 77216781 CTGTGAGCAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027459 11 - 80997621 CTGTGAGCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083704 11 + 10377808 CTGTGAGCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969522 11 - 8458610 CCGTGAGCAGC i cerAty1.NW_012006043v1 C 0 I 120 s chlSab2.chr16 64913761 11 + 75148670 CCGTGAGCAGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153770 11 + 4244037 CCGTGAGCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176826 11 + 4569836 CCGTGAGCAGC i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1842395 11 + 3513951 CTGTGAGCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891091 11 + 1920343 CTGCGAGCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007484 11 - 7032639 CTGTGAGCAGC i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3012587 11 + 8555354 CCGTGAGCAGC i proCoq1.NW_012135969v1 T 2 C 0 s otoGar3.GL873537 22834761 11 + 28711273 CCGTGAGCAGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096157 11 - 122082543 CCGTGAGCAGT i mm10.chr11 C 0 C 0 s canFam3.chr9 21448087 11 + 61074082 CTGTGAACAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451472 11 - 852752 CCATGAGCAGC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35925932 29 - 65901067 T e calJac3.chr5 46132704 0 - 159171411 C e nomLeu3.chrUn_GL397460_1 2040607 0 - 2193130 C a score=18663.000000 s hg38.chr17_GL383564v2_alt 131268 2 + 133151 GG s panTro5.chr17 16320298 2 + 83181570 GG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225173 2 + 83442489 GG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060314 2 + 4267968 GG i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30114608 2 - 77216781 TG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027470 2 - 80997621 TG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083715 2 + 10377808 TG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969653 2 - 8458610 TG i cerAty1.NW_012006043v1 I 120 C 0 s chlSab2.chr16 64913772 2 + 75148670 TG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153781 2 + 4244037 TG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176837 2 + 4569836 TG i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1842406 2 + 3513951 TG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891102 2 + 1920343 TG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007495 2 - 7032639 TG i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3012598 2 + 8555354 TG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834772 2 + 28711273 CG i otoGar3.GL873537 C 0 T 120 s mm10.chr11 22096168 2 - 122082543 TG i mm10.chr11 C 0 C 0 s canFam3.chr9 21448098 2 + 61074082 TG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451483 2 - 852752 TG i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35925932 29 - 65901067 T e calJac3.chr5 46132704 0 - 159171411 C e nomLeu3.chrUn_GL397460_1 2040607 0 - 2193130 C a score=35305.000000 s hg38.chr17_GL383564v2_alt 131270 3 + 133151 CTG- s panTro5.chr17 16320300 3 + 83181570 CTG- i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225175 3 + 83442489 CTG- i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060316 3 + 4267968 CTG- i gorGor5.CYUI01015385v1 C 0 C 0 s rheMac8.chr16 30114610 3 - 77216781 CTG- i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027472 3 - 80997621 CTG- i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083717 3 + 10377808 CTG- i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969655 3 - 8458610 CTG- i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913774 3 + 75148670 CTG- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153783 3 + 4244037 CTG- i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176839 3 + 4569836 CTG- i colAng1.NW_012122154v1 C 0 C 0 s saiBol1.JH378271 1842408 3 + 3513951 CTG- i saiBol1.JH378271 C 0 T 60 s cebCap1.NW_016107730v1 1891104 3 + 1920343 CTG- i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007497 3 - 7032639 CTG- i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3012600 3 + 8555354 CTG- i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834654 3 + 28711273 CTG- i otoGar3.GL873537 T 120 C 0 s mm10.chr11 22096170 3 - 122082543 CTG- i mm10.chr11 C 0 C 0 s canFam3.chr9 21448100 2 + 61074082 -TG- i canFam3.chr9 C 0 I 1 s dasNov3.JH570468 451485 3 - 852752 -CGC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35925932 29 - 65901067 T e calJac3.chr5 46132704 0 - 159171411 C e nomLeu3.chrUn_GL397460_1 2040607 0 - 2193130 C a score=618800.000000 s hg38.chr17_GL383564v2_alt 131273 46 + 133151 ---------------------------------------------------------CCAACCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTGCTCT s panTro5.chr17 16320303 46 + 83181570 ---------------------------------------------------------CCAACCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTCCTCC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225178 46 + 83442489 ---------------------------------------------------------CCAACCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTGCTCC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060319 46 + 4267968 ---------------------------------------------------------CCAACCCGTGTGCTGTGAGGCCACCACCTGTGAACCTTCTTGCTCT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040607 18 - 2193130 -------------------------------------------------------------------------------------TGTGAGCCTTCTTGCTCT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114613 46 - 77216781 ---------------------------------------------------------CCAACCTGTGTGCTGTGAGGCCAGCATTTGTGAGCCTTCTTGCTCT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027475 46 - 80997621 ---------------------------------------------------------CCAACCTGTGTGCTGTGAGCCTGCTATTTGTGAGCCTTCTTGCTCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083720 46 + 10377808 ---------------------------------------------------------CCAACCTGTGTGCTGTGAGCCTGCTATTTGTGAGCCTTCTTGCTCC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969658 46 - 8458610 ---------------------------------------------------------CCAACCTGTGTGCTGTGAGCCTGCTATTTGTGAGCCTTCTTGCTCC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913777 46 + 75148670 ---------------------------------------------------------CCAACCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTGCTCC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153786 46 + 4244037 ---------------------------------------------------------CCAACCCGTGTGCTGTGAAGCCACCACCTGTGAGCCTTCTTGCTCC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176842 46 + 4569836 ---------------------------------------------------------CCAACCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTACTCC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132704 46 - 159171411 ---------------------------------------------------------CCAAACCCTGTGCTGTGAGCCTGCCACGTGTGAGCCTTCTTGCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842351 46 + 3513951 ---------------------------------------------------------CCAACCCCTGTGCTGTGAGCCTGCTGCGTGTGAGCCTTCTTGCTCT i saiBol1.JH378271 T 60 C 0 s cebCap1.NW_016107730v1 1891107 46 + 1920343 ---------------------------------------------------------CCAACCCATGTGCTTCGAGGCCACCACCTGTGAGCCTTCTTGCTCT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007500 46 - 7032639 ---------------------------------------------------------CCAACCCGTGTTCTGCGAGACCACCACCTGTGAGCCTTCTTGCTCT i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3012603 46 + 8555354 ---------------------------------------------------------CCAACCTGTGTGTTGTGAGGCCACCATTTGTGAACCTTCTTGCTCC i proCoq1.NW_012135969v1 C 0 T 60 s otoGar3.GL873537 22834657 46 + 28711273 ---------------------------------------------------------CCAACCTGTGTGCTGCGCAGCTGCCATTTGTGAACCTTCTTGCTCT i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096173 46 - 122082543 ---------------------------------------------------------CCAGCCTGTGTGCTGCGAGGCTACCATTTGTGAGCCCTCTTGTTCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21448103 46 + 61074082 ---------------------------------------------------------CCAACCTGTGTGCTGTGAAGCCACCACCTGTGAGCCTTCCTGTGCT i canFam3.chr9 I 1 C 0 s dasNov3.JH570468 451488 103 - 852752 CCAACCTGTGTGCTGCGAGGCCCCCATCTGTGAGCCCTGTTCCGTGAGCAGCTGTGCCCAACCTGTGTGCTGCAAGGCCACCATCTGTGAGCCCTCCTGTTCC i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35925932 29 - 65901067 T a score=185977.000000 s hg38.chr17_GL383564v2_alt 131319 9 + 133151 GTGAGCAAC s panTro5.chr17 16320349 9 + 83181570 GTGAGCAGC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225224 9 + 83442489 GTGAGCAGC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060365 9 + 4267968 GTGAGCAGC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040625 9 - 2193130 GTGAGCAGC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114659 9 - 77216781 GTGAGCAGC i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027521 9 - 80997621 GTGAGCAGC i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083766 9 + 10377808 GTGAGCAGC i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969704 9 - 8458610 GTGAGCAGC i cerAty1.NW_012006043v1 C 0 T 180 s chlSab2.chr16 64913823 9 + 75148670 GTGAGCGGC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153832 9 + 4244037 GTGAGCAGC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176888 9 + 4569836 ATGAGCGGC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132750 9 - 159171411 GTGAGCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842397 9 + 3513951 GTGAGCAGC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891153 9 + 1920343 GCGAGCAGC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007546 9 - 7032639 GTGAGCAGC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925903 9 - 65901067 GTGAGCAGC i micMur3.chr16 T 29 C 0 s proCoq1.NW_012135969v1 3012589 9 + 8555354 GTGAGCAGC i proCoq1.NW_012135969v1 T 60 C 0 s otoGar3.GL873537 22834703 9 + 28711273 GTGAACAGC i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096219 9 - 122082543 GTGAGCAGC i mm10.chr11 C 0 C 0 s canFam3.chr9 21448149 9 + 61074082 GTGAGCAGC i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451591 9 - 852752 GTGAGCAGC i dasNov3.JH570468 C 0 C 0 a score=937947.000000 s hg38.chr17_GL383564v2_alt 131328 80 + 133151 TGCTACCAACCTGTGTGCTTCGAGGCCACCATCTGTGAGCCTTCTTGCTCAGTGAGCAACTGCTGCCAACCTGTGTGCTT s panTro5.chr17 16320358 80 + 83181570 TGCTACCAACCTGTGTGCTTCGAGGCCACCATCTGTGAGCCTTCTTGCTCAGTGAGCAACTGCTGCCAACCTGTGTGCTT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225233 80 + 83442489 TGCTACCAACCTGTGTGCTTCGAGGCCACCATCTGTGAGCCTTCTTGCTCAGTGAGCAACTGCTGCCAACCTGTGTGCTT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060374 80 + 4267968 TGCTACCAACCTGTGTGCTTCGAGGCCACCACCTGTGAGCCTTCTTGCTCAGTGAGCAACTGCTGCCAACCTGTGTGCTT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040634 80 - 2193130 TGCTGCCAACCCGTGTGCTGTGAGGCCACCACCTGTGAGCCCTCTTGCTCCGTGAGCAGCTGTTGCCAACCTGTGTGCTT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114668 80 - 77216781 TGTGCTCAACCTGTGTGCTGTGAGCCTCCTACCTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTGTGCTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027530 80 - 80997621 TGCTGCCAATCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTGCTCCGTGAGCGGCTGCTGCCAACCTGTGTGCTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083775 80 + 10377808 TGCTGCCAATCCGTGTGCTGTGAGGCCACCACCTGTGAGCCTTCTTGCTCCGTGAGCGGCTGCTGCCAACCTGTGTGCTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969533 80 - 8458610 TGCTGCCAACCTGTGTGCTTCGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGTTCAACCTGTGTGCTG i cerAty1.NW_012006043v1 T 180 C 0 s chlSab2.chr16 64913832 21 + 75148670 TGCTGCCAACCTGTGTGCTTC----------------------------------------------------------- i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153841 80 + 4244037 TGTGCTCAACCTGTGTGCTGTGAACCTGCTATTTGTGAGCCTTCTTGCTCCATGAGCAGCTGCTGCCAACCTGTGTGCTT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176897 21 + 4569836 TGCTGCCAACCTGTGTGCTTC----------------------------------------------------------- i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132759 80 - 159171411 TGCTGCCAACCCGTGTTCTGCCAGACCACCACCTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCCGTGTGCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842406 80 + 3513951 TGCTGCCAACCCGTGTTCTGCGAGACCACCACCTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCCGTGTGCTT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891162 80 + 1920343 TGCTGCCAACCCGTGTGCTTCGAGGCCACCACCTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCCGTGTGCTT i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007555 20 - 7032639 TGCTGCCAACCCGTGTGCTT------------------------------------------------------------ i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925912 80 - 65901067 TGCTGCCAACCCCTGTGCTGCGAGGCCACTGTTTGTGAACCTTCTTGCTCCGTGAGCAGCTGTGCCCAACCCCTGTGCTG i micMur3.chr16 C 0 T 60 s proCoq1.NW_012135969v1 3012598 80 + 8555354 TGCTGCCAACCTGTGTGTTGTGAGGCCACCATTTGTGAACCTTCTTGCTCCGTGGGCAGCTGTGCCCAACCCCTGTGCTG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834712 80 + 28711273 TGTGCCCAACCCCTGTGCTGTGAGCCCACCGTTTGTGAACCTTCTTGCTCCGTGAGCAGCCGTGCCCAACCCCTGTGCTG i otoGar3.GL873537 C 0 C 0 s mm10.chr11 22096228 80 - 122082543 TGTGCTCAACCTGTGTGCTGTGAGGCCACCATTTGTGAGCCTTCCTGCTCTATGGGCAGTTGCTGTCAACCTGTGTGCTG i mm10.chr11 C 0 C 0 s canFam3.chr9 21448158 80 + 61074082 TGTGCCCAACCTGTGTGCTATGAAGCCACCATCTGTGAGCCCTCCTGTTCTATGAACAGCTGTGCCCAACCTGTGTGCTG i canFam3.chr9 C 0 I 60 s dasNov3.JH570468 451600 80 - 852752 TGTGCCCAACCTGTGTGCTGCGAGGCCAACACCTGTGAGCCCTCCTGTTCCGTGAGCAGCTGTGCCCAACCTGTGTGCTG i dasNov3.JH570468 C 0 C 0 a score=1220073.000000 s hg38.chr17_GL383564v2_alt 131408 64 + 133151 TGAGGCCACCGTTTGTGAGCCTTCTTGTTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG s panTro5.chr17 16320438 64 + 83181570 CGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225313 64 + 83442489 CGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060454 64 + 4267968 CGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040714 64 - 2193130 TGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTGTGCTGTGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114748 64 - 77216781 CGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGTTCAACCTGTGTGCTGTGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027610 64 - 80997621 TGAGGCCACCATTTGTGAACCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083855 64 + 10377808 TGAGGCCACCATTTGTGAACCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969613 64 - 8458610 TGAGCCTGCTATTTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCTGTGTGCTGTGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913853 63 + 75148670 -GAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153921 64 + 4244037 CGAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGTTCAACCTGTGTGCTGTGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176918 63 + 4569836 -GAGGCCACCATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCCCAACCCGTGTGCTGTGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132839 64 - 159171411 CGAAGCCACCATCTGTGAGCCTTCTTGCTCTGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842486 64 + 3513951 CGAGGCCACCATCTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891242 64 + 1920343 CGAGGCCACCATCTGTGAGCCTTCTTGCTCTGTGAGCAGCTGTGTTCAACCTGTGTGCTGTGAG i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007575 64 - 7032639 CGAGGCCACCATCTGTGAGCCTTCTTGCTCCGTGAGCAGCTGTGCTCAACCTGTGTGCTGTGAG i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925932 64 - 65901067 CGAGGCCACTGTTTGTGAACCTTCTTGCTCCGTGAGCAGCTGTGCCCAACCCCTGTGCTGCGAG i micMur3.chr16 T 60 C 0 s proCoq1.NW_012135969v1 3012678 64 + 8555354 CGAGGCCACCGTTTGTGAACCTTCTTGCTCCGTGAGCAGCTGTGCCCAACCCCTGTGTTGTGAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834792 64 + 28711273 TGAGGCCACAGTTTGTGAGCCTACTTGTCCTGAGAGTAGCTGTGCCCAACCTGTGTGCTGTGAG i otoGar3.GL873537 C 0 T 120 s mm10.chr11 22096308 64 - 122082543 TGAGGCCACCATTTGTGAGCCTTCCTGCTCTGTGAGCACCTGTGCCCAACCTGTGTGCTGTGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21448298 64 + 61074082 TGAAGCCACCATCTGTGAGCCCTCCTGTGCTGTGAATAGCTGTGCCCAACCTGTGTGCTGTGAA i canFam3.chr9 I 60 C 0 s dasNov3.JH570468 451680 64 - 852752 CGAGGCCACCATCTGTGAGCCCTCCTGTTCCGTGAGCAGCTGTGCCCAACCTGTGTGCTGTGAG i dasNov3.JH570468 C 0 C 0 a score=1006317.000000 s hg38.chr17_GL383564v2_alt 131472 60 + 133151 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAGCCTGTAGGCTCTGAA s panTro5.chr17 16320502 60 + 83181570 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAGCCTGTAGGCTCTGAA i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225377 60 + 83442489 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAGCCTGTAGGCTCTGAA i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060518 60 + 4267968 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAGCCTGTAGGCTCTGAG i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040778 60 - 2193130 CCTGATATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTAGGCTCTGAG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114812 60 - 77216781 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTATGTGCTGAG i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027674 60 - 80997621 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTATGCGCTGAG i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083919 60 + 10377808 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTATGCGCTGAG i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969677 60 - 8458610 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTATGTGCTGAG i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913916 60 + 75148670 CCTGCTATTTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCTGTATGCACTGAG i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2153985 60 + 4244037 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTATGTGCTGAG i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2176981 60 + 4569836 CCTGCTATTTGTGAGCCTTCTTGCTCCGTGAGCAGCTGCTGCCAACCTGTGTGCTCTGAG i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132903 60 - 159171411 CCTGCTATTTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCTGTATGCTCTGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842550 60 + 3513951 CCTGCTATTTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCTGTATGCTCTGAA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891306 60 + 1920343 CCTGCTGTTTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCTGTATGCTCTGAA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007639 60 - 7032639 CCTGCTATTTGTGAGCCTTCTTGCTCTGTGAGCAGCTGCTGCCAACCTGTATGCTCTGAA i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35925996 60 - 65901067 GCCACCGTTTGTGAGCCTACTTGTCCCGAGAGCAGCTGTGCCCAACCAGTGTGCTGTGAG i micMur3.chr16 C 0 C 0 s proCoq1.NW_012135969v1 3012742 60 + 8555354 GCCACCATTTGTGAGCCTACTTGTCCTGAGAGCAGCTGTGCCCAACCAGTGTGCTGTGAG i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834736 60 + 28711273 CCCACCGTTTGTGAACCTTCTTGCTCCGTGAGCAGCCGTGCCCAACCCCTGTGCTGTGAG i otoGar3.GL873537 T 120 I 60 s mm10.chr11 22096372 57 - 122082543 GCCACCATGTGCCAGCCTTCTTGTTCTGTGAGCAGCTG---CCAGCCCGTGTGTTGTGAG i mm10.chr11 C 0 C 0 s canFam3.chr9 21448362 60 + 61074082 GCCACCATCTGTGAGCCTTCTTGCTCAGTGAGCAGTTGCTGCCAACCTGTGTGCTGTGAG i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451744 60 - 852752 GCCACCATCTGTGAGCCCTCCTGTTCTGTGAGCAGCTGTGCCCAACCTGTGTGCTGTGAG i dasNov3.JH570468 C 0 C 0 a score=21309627.000000 s hg38.chr17_GL383564v2_alt 131532 1192 + 133151 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTTCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCAAGTTGCTCAGAGTCTAGCATCTGCCAGCCAGCTACGTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCTCGTGCGAGCCACCTTCTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGTCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCCTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCAGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGTGCTACGATTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACATGACATCCATCTCCTACCGTCCTGCCTGCTATCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTGCCGCCCAGTCTACTTCCGCCCATCTTGCACTGAGTCTGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAACTGGATTGTGTTGACACAACCCCCTGCAAGGTGGATGTCTCAGAAGAGGCTCCCTGCCAGCCCACTGAAGCCAAACCCATCAGCCCAACCACCCGTGAGGCCGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAATTGGCTTCAGCCCCCCAATTCTTGCAAGTCA--AGCCACCAGCTAGAGACAAAACTGCACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACAATCGGCTTACCCCTCAAAGAACTCATCAGAAATGTCAGTAT s panTro5.chr17 16320562 1192 + 83181570 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTTCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCAACTTGCTCAGAGTCTAGCATCTGCCAGCCAGCTACGTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCACCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGTCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCAGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACATGACATCCATCTCCTACCGTCCTGCCTGCTATCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTGCCGCCCAGTCTACTTCCGCCCATCTTGCACTGAGTCTGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAACTGGATTGTGTTGACACAACCCCCTGCAAGGTGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAAGCCAAACCCATCAGCCCAACCACCCGTGAGGCCGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAATTGGCTTCAGCCCCCCAATGCTTGCAAATCA--AGCCACCAGCTAGAGACAAAACTTCACTGTCCTCCCCAAAG----CTCATTATGACTTAACTAGGAGC-------TCTTTCCTTCTG-------CATTGTTACTCACCATCGGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16225437 1192 + 83442489 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCAAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTTCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCAACTTGCTCAGAGTCTAGCATCTGCCAGCCAGCTACGTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCACCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGTCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCAGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACATGACATCCATCTCCTACCGTCCTGCCTGCTATCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTGCCGCCCAGTCTACTTCCGCCCATCTTGCACTGAGTCTGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAACTGGATTGTGTTGACACAACCCCCTGCAAGGTGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAAGCCAAACCCATCAGCCCAACCACCCGTGAGGCCGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAATTGGCTTCAGCCCCCCAATGCTTGCAAATCA--AGCCACCAGCTAGAGACAAAACTTCACTGTCCTCCCCAAAG----CTCATTATGACTTAACTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCATCGGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4060578 1189 + 4267968 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTTCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCTACGTGTGTGGCTCTAGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCACCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTCTGTGTCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCACTGTAGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTC-TTCCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGTGCTACGGTTTCCTACCG-CCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACGTGACATCCATCTCCTACCGTCCTGCCTGCTATCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCTTACTCTTGCCGCCCAGTCTACTTCCGCCCATCTTGCACTGAGTCTGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAACTGGATTGTGTTGACACAACCCCCTGCAAGGTGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAAGCCAAACCCATCAGCCCAACCACCCGTGAGGCCGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAATTGGCTTCAG-CCCCCAATTCTTGCAAATCA--AGCCACCAGCTAGAGACAAAACTGCACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCATCTTCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2040838 1192 - 2193130 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCGAATCCAGCTGCTGTCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCAACAC---------------CTACCTGCTCTGTGACCAGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCTACCTGTGTGGCTCTGGTCTGTGAGCCAGTTGGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCATGCGAGCAACCTTGTGTCCCCAACACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAATCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCCGTGCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGTGCTATGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACGTGACATCCATCTCCTACCGTCCTGCCTGCTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCATCTTGCACTGAGTCTGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAACTGGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGTCCAACCACCCGTGAGGCCACAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCCTCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTGCAGTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCATCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30114872 1192 - 77216781 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGTTGTTTCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCCACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCATCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACAGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCTCCTACCGTCCCTCCTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCGGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAAGTGGATTGTGTTGACTCAACCCCCTGCAAAGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCTCCCCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CACTGTTACTCACCATCTGCTTACATCTCAAAGAACTCATCAGAAATGTCAGTAT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28027734 1192 - 80997621 ACCACTTCTTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCCACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCATCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACAGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCTCCTACCGTCCCTCCTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAAGTGGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCTCCCCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCATCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2083979 1192 + 10377808 ACCACTTCTTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGTCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCCACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGTGAGCCATCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCCGTCATTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACAGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCTCCTGCCGTCCCTCCTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAAGTGGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCTCCCCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCATCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1969737 1192 - 8458610 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCCACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCATCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCGTCTACCTCCTGCCGACCTCTTTCCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACAGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCCCCTATCGTCCCTCCTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAAGTGGATTGTGTTGACTCAACACCCTGCAAGGTGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCCCCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCACCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64913976 1192 + 75148670 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGTCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGTCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCTACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCATCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGACCTCTTTCCTGCTGTCCAGGGTCTTCTGCATCTGCCGTCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGCGCTACAGTTTCCTACCGCCCG------------GTCTCCCGTCCTATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCTCTTACCGTCCCTCCTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAAGTGGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTCCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCCCCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCATCATCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2154045 1192 + 4244037 GCCACTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGCCAGCCAGCCACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCGTGCGAGCCATCTTGTGTCCCCAGCACTTGCCAAAAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGTCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCGTCTACCTCCTGCCGACCTCTTTCCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCGACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACAGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCTCCTACCGTCCCTCCTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACAGGATTGCAAAAAATCCACTTCCAGCCAAGTGGATTGTGTTGACTCAACACCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCCCCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCACCATCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2177041 1186 + 4569836 GCCTCTTCCTG---------------------------CCAACCAGTCCTCTGTGTGCCCACTTCCTGCCAGCCTGTCCTCTGCAAATCCAGCTGCTGCCAGCCAGTTGTCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACCCTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCAGTGTGCCCGACAC---------------CTACCTGCTCTGTGACCAGTGGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCGTCTTGCTCAGAGTCTAGCATCTGCCAGCCAGTTACCTGTGCGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCATGCGAGCCATCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAATCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCTGAGCCAGTTTCCTGCCCATCTACCTCCTGCCGAC------CCTGCCGTCCAGGGTCTTCTGCATCTGCCATCTGCCAACCAACTTG---TCCTAGG---ACTTTCTACATACCCAGTTCCAGCAAACGGCCTTGCAGTGCTACGGTTTCCTACCGCCCG------------GTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCTTCACCTATAGGCAGCCATATGTGACATCCATCTCCTACCGTCCCTCTTGTTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTTCCGCCCGTCTTGCACTGAGTCCGACTCTTGCAAACGGGATTGCAAAAAATCCACTTCCAGCCAAGTAGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCTGCAGCAGCTCAGCCTGCTGCCAGCAAGCCTGCCAACTGCTAAACCGGCTTCAGCCCCTCAATTCTTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTACACTGTCCTCCCCAAAG----CTCATTATGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CATTGTTACTCATTATCTGCTTACACCTCAAAGAACTCATCAGAAATGTCAGTAT i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46132963 1199 - 159171411 GCCCCTTCCTG---------------------------CCAACCAGTCCTATGTGTGCCGACTTCCTGCCAACCTATTTTCTGCAAATCCAGCTGCTGCCAGCCAGTCGTCTGTGAGCCCAGCTGCTGCCCAGCTGTCTGCACCGTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCCACAC---------------CTACCTGCTCTGTGACCAGCAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGTCAGCCAGCTACCTGTGTGGCTCTGGTCTGTGAGCCGGTTTGCCTCCGCCCCGTCTGCTGTGTTCAGAGCCCATGCGAGCCACCTTGTGTCCCCAGTACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCATCAGCTGCCTGCATGCCCAATCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCCGAGCCAATTTCCTGCCCATCTGCCTCCTGCCAGCCTCTTTCCTGCCGTCCAGGATCTTCTGCATCTGTCATCTGCCGACCAACTTG---CCCTAAG---ACTTTCTACATACCCAATTCCTGCAAACGACCTTGCAGTGCTATGGGGTCCTACCGCCAG------------CTCTCCCGTCCGATCTGCCGCCCAATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACGTGACCTCCATCTCCTACCGTCCTGCCTGCTACCGCCCGTGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTCCCGCCCGTCTTGCACGGAGTCCGACTGTTCCAAACGGGCTTGCAAAAAATCCACGTCCAGCCAACTGGATTGTGTTGACTCAACCGCCTGCAAGGCTGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACCGAGGCCAAACCCATCAGCCCAACCAACCGTGAGGCCATAGCAGCTCAACCGGTTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCTCCAATTCCTGCAAAGCA--TGCCACCAGCTGGAGACAAAACTGAGTTGTTTTCTCCAAAG----CTCATTGTGACTTAGCTAAGAGC-------TCTTTCTTTCTGCATTGTTCATTGTTACTCACCATCTGCTTACGCCTCAAAGAACTCATCAGAAATGCCAGTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1842610 1192 + 3513951 GCCACTTGCTG---------------------------CCAACCAGTCCTATGTGTGCCCACTTCCTGCCAGCCCATTCTCTGCAAATCCAGCTGCTGCCAGCCAGTCGTCTGTGAGCCCAGCTGCTGCCCAGCTGTCTGCACCGTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCCACAC---------------CTACCTGCTCTGTGACCAGCAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCGTCTGTCAGCCAGCTACCTGCATGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCATGTGAGCCACCTTGTGTCCCCAGCACGTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGCCTGTGTGCCCAATCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCCGAGCCAATTTCCTGTCCATCTACCTCCTGCCAGCCTCTTTCCTGCCGTCCAGGATCTTCTGCATCTGTCATCTGCCGACCAACTTG---CCCTAAG---ACCTTCTACATACCTAGTTCCTGCAAACGGCCTTGTAGTGCTCTGGGTTCCTACCGCCAG------------CTCTCCCGTCCGATCTGCCGCCCGATCTGCTCTGGACTCCTCACCTATAGGCAGCCATACGTGACCTCCATCTCCTACCGTCCTGCCTGCTACCGCCCATGCTACTCCATCCTGCGCCGCCCGGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTCCCGCCTGTCTTGCACGGAGTCCGACTCTTCCAAACGGGCTTGCAAAAAATCCACGTCCAGCCAACTGGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTTTCAGAGGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCACCCGTGAGGCCGTAGCAGCTCAGCCCGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCGGCCCTCCAATTCCTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTGCGCTGTTTTCTCCAAAG----CTCATTGTGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CGTTGTTACTCACCATCTGCTTACGCCTCAAAGAACTCATCCGAAATGTCAGTAT i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1891366 1190 + 1920343 GCCACTTCCTG---------------------------CCAACCAGTCCTATGTGTGCCCACTTCCTGCCAGCCTATTCTCTGCAAATCCAGCTGCTGCCAGCCAGTCGTCTGTGAGCCCAGCTGCTGCCCAGCTGTCTGCACCGTGCCTAGTTCCTGCCAA---------------CCTGTGGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCCACGC---------------CTACCTGTTCTGTGACTAGCAGCTGCCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGTCAGCCAGCTACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGCCCTGTCTGCTGTGTTCAGAGCCCATGTGAGCCACCTTGTGTCTCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGCCTGTGTGCCCAATCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCCAAGCCAATTTCCTGTCCATCTACCTCCTGCCAGCCTCTTTCCTGCCGTCCAGGATCTTCTGCATCTGTCATCTGCCGACCAACTTG---CCCTAAA---ACTTTCTATATACCCAGTTCCTGCAAACGGCCTTGTAGTGCCATGGGTTCCTACCGCCAG------------CTCTCCCGTCCAATCTGCCGCCCGATCTACTCTGGACTCCTCACCTATAGGCAGCCATATGTGACCTCCATCTCCTACCGTCCTGCCTGCTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACATCCTACTCTTACCGCCCAGTCTGCTCCCACCCGTCTTGCACGGAGTCCGACTCTTCCAAACGGGCTTGCAAAAAATCCACGTCCAGCCAACTGGACTGTGTTGACTCCACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCAACAGCCCAACCACCCGTGAGGCCGTAGCAGCTCAACCAGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCTCCAATTCCTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTGCACTGTTTTCTCCAAAG----CTCATTGCGACTTAGCTAGGAGC-------TC--TCTTTCTG-------CGTTGTTACTTACCATCTGCTTACGCCTCAAAGAACTCATCAGAAATGTCAGTAC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7007699 1192 - 7032639 GCCACTTCCTG---------------------------CCAACCACTCCTATGTGTGCCCACTTCCTGCCAGCCTATTCTCTGCAAATCCAGCTGCTGCCAGCCAGTCGTCTGTGAGCCCAGCTGCTGCCCAGCTGTCTGCACCGTGCCTAGTTCCTGCCAA---------------CCTGTTGTCTGTGAGCCTGCCTGCTGTCAGCCGGTGTGCCCCACAC---------------CTACCTGCTCTGTGACCAGCAGCTACCAGGCTGTCTGCTGTGACCCCAGCCCTTGTGAGCCATCTTGCTCAGAGTCTAGCATCTGTCAGCCAGCTACCTGTGTGGCTCTGGTCTGTGAGCCAGTTTGCCTCCGTCCTGTCTGCTGTGTTCAGAGCCCATGTGAGCCACCTTGTGTCCCCAGCACTTGCCAAGAGCCTTCTTGTTGTGTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGCCTGCGTGCCCAATCCATGCCAACCTACTTGCTATGTAGTCAAGCGCTGTCGTTCTGTCTGCCCCGAGCCAATTTCCTGCCCATCTACCTCCTGCCAGCCTCTTTCCTGCCGTCCAGGATCTTCTGCATCTGTCATCTGCCGACCAACTTG---CCCTAAG---ACTTTCTACATACCCAGTTCCTGCAAACGGCCTTGCAGTGCTATGGGTTCCTACCGCCCG------------CTCTCCCGTCCGATCTGCCGCCCCATCTGCTCTGGACTCCTCACCTACAGGCAGCCATACGTGACCTCCATCTCCTACCGCCCTGCCTGCTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCCTACTCTTACCGCCCAGTCTGCTACCGCCCGTCTTGCACGGAGTCCGACTCTTCCAAACGGGATTGCAAAAAATCCACGTCCAGCCAACTGGATTGTGTTGACTCAACCCCCTGCAAGGCGGATGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCATCAGCCCAACCACCCGTGAGGCCGTAGCAGCTCAACCGGCTGCCAGCAAGCCTGCCAACTGCTAAACTGGCTTCAGCCCTCCAATTCCTGCAAAGCA--AGCCACCAGCTAGAGACAAAACTGCGCTGTTTTCTCCAAAG----CTCATTGTGACTTAGCTAGGAGC-------TCTTTCTTTCTG-------CGTTGTTACTCACCATCTGCTTACGCCTCAAAGAACTCATCAGAAATGTCAGTAT i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35926056 1218 - 65901067 GCCACTTCCTG---------------------------CCAGCCGGTCCTCTGTGTGCCCACATCTTGCCAGCCTGTGCTCTGCAAACCCAGCTGTTGCCAGCCGGTCATCTGTGAACCCAGCTGCTGTTCAGCTGTGTGTGCCGTGCCTAGTTCCTGCCAA---------------CCCATGGTCTGTGAGCCCGTTTGCTGTCAGCCAGTGTGCCCGACGCCTAGCTGTGGTCCCTCTATCTGCTCTGTGGCCAGCAGCTGCCAGGCTGTCTGCTGTGACCCCAGTCCTTGTGAGCCATCCTGCTCAGAGCCCAGCATCTGCCAGCCGGCTCCCTGCGTGGCTCTGGTCTGTGAGCCCGTCTGCCTCCGCCCTGTCTGTTGTGTTCCGAGCCCCTGCGAGCCACCTTGTATCTCCAGCACTTGCCAGGAGCCTTCTTGTTGCGTCTCCAGTGTCTGCCAACCCATCTGCTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGCCCGTGCCAGCCTACCTGCTACGTGGTCAAGCGCTGTAGTTCGGTTAGCTGTGAGCCTGTTTCCTGCCCATCTACCTCTTGCCAACCTTTGTGTTGCCGGCCGGGGTCTTCTGCATCTGCCATCTGCCAACCAACTTG---CCCTCGG---ACTTTCTACATACCCAGTTCCTGCAAACGGCCTTGCAGTCCTGCAGTTTCCTACCGACCTAtttgccgcccaatctgccgcccagtttgccgcccGATCTGCTCCGGACTCATCTCCTACAGGCAGCCCTACGTGACATCTGTCTCCTACCGTCCTGCCTGCTACCGCCCCTGCTACTCCATCCAGCGCCGCCCGGCCTACCTTACTTCCTACTCTTACCGCCCTGTCTGCGCCCGCCAGCCTTGTGCTGAGTCAGACGCCTGCAAACGGGATTGCAAGAAGTTCACTTCCAGCCAGCCTGATTGTGCCGACTCATCCCCCTGCAAGGCAGAGGCCACAGAGGAGGGTCCCTGCCAGCCCACTGAGGCCAAACCCACCACCCCAATTACCCGTGAGGCTAcagccactcagccttctgccagcaagcctgccaactgctgagccagcccccacccagcAATTCCTGCAAAGCA--AGTCACCACCTGGAGAGAATACTCAACTGCCCTCCCTGAAG----CTCATTATGACTTAGCCAGGAT--------TTTTCCTTTCTG-------CACTGCTACTTGCCATCTGCTTATGCTTCAAAGAGCCCATCAGAAATGTCAATAT i micMur3.chr16 C 0 I 120 s proCoq1.NW_012135969v1 3012802 1219 + 8555354 GCCACTTCCTG---------------------------CCAGCCGGTCCTCTGTGTGCCCACATCTTGCCAGCCTGTCCTCTGCAAACCCACCTGTTGCCAGCCAGTCATCTGTGAATCCAGCTGCTGTTCAGCTGTGTGCGCCGTGCCTAGTTCCTGCCAA---------------CCCATGGTCTGTGAGCCTGTTTGCTGTCAGCCAGTGTGCCCGACACCTAGCTGTGGTCCCTCTATCTGCTCTGTGGCCGGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGTCCTTGTGAGCCACCCTGCTCAGAGCCCAGTGTCTGCCAGCCGTCTCCCTGTGTGGCTCTGGTCTGTGAGCCTGTCTGCCTCCGCCCTGTCTGCTGTGTTCCGAGCCCCTGCGAGCCACCTTGTATCTCCAGCACTTGCCAGGAGCCTTCTTGTTGCATCTCCAGTGTGTGCCAACCCATCTGCTCTGAGCCCAGCCCATGCTCACCAGCTGTCTGTGTGTCCAGCCCATGCCAGCCTACCTGCTACGTGGTCAAGCGCTGTCGTTCGGTTGGCTGTGAGCCTGTTTCCTGCCCATCTACCTCCTGCCAACCTCTCTGCTGCCGGCCAGGGTCTTCTGCATCTGCCATCTGCCAATCAACTTG---CCCTCGG---ACTTTCTACATACCCAGTTCCTGCAAACGGCCTTGCAGTCCTGCAGTTTCCTACCGACCGATTtgccgtccaatctgccgcccagtctgccgcccaatctgcTCTGGACTCATCTCCTACCGGCAGCCCTACGTGACATCCATCTCCTACCGTCCTGCCTGCTACCGCCCCTGCTACTCCGTCCAGCGCCGCCCGGCCTACCTCACTTCCTACTCTTACCGCCCTGTCTGTGCCCGCCAACCTTGTGCTGACTCAGACTCCTGCAAACGGGATTGCAAGAAGTTCACTTCCAGCCAGCCCGATTGTGCTGACTCGTCTCCCTGCAAGGCGGAGTCCTCAGAGGAGGGTCCCTGCCAGCCCACTGAGACCAAACCCACCACCCCACTTACCCGTGAGGCTGCAGCTACTCAGCCTTCTGCCAGCAAGCCTGCCAACTGCTGAACCAGCCCCAGCCTAGCAATTCCTGCAAAGCA--AGCCACCACCTGGAGAGAACACTCAACTGCCCTCCCTGAAG----CTCATTATGACTTAGCCAGGATC-------TTTTTCTTTCTG-------CACTGCTACTCGCCATCTGCTTATGCTTCAAAGAACCCATCAGAAATGTCAGTAT i proCoq1.NW_012135969v1 C 0 C 0 s otoGar3.GL873537 22834856 1201 + 28711273 GCCACTTCCTG---------------------------TCAACCGGTCCTCTGTGTGCCTACATGCTGCCAGCCTGTTCTCTGCAAACCCAGCTGCTGCCAGCCAGTTGCCTGTGAGCCCAGCAGCGGCTCAGCTGTTTGCACCGTGCCTAGTGTCTGCCAA---------------CCCATGATCTGTGAGCCTGTTTGCTGCCAGCCAGTGTGCCCGACGCCTAGCTGTGGTCCCTCTATCTGCTCTGTGGCCAGTAGCTGCCAGGCTGTCTGCTGTGACCCCAGTCCTTGTGAGCCATCTTGCCCAGAGACCAGCATTTGCCAGCCGGCTCCCTGCATGACTCTGGTCTGTGAGCCGGTCTGCCTCCGCCCTGTCTGCTGTGTTCCAAGCCCCTGTGAACCACCTTGTGTCTCCAGCACTTGCCAGGAGCCTTCTTGTTGTATCTCCAGTGTCTGCCAGCCCATCTGTTCTGAGCCCAGCCCCTGCTCACCAGCTGTCTGTGTGCCCAGCCCGTGCCAGCCTACCTGCTACGTGGTCAAGCCCTGTCGTTCGGTCAGCTGTGAGCCTGTGTCCTGTCCACCTACCTCTTGCCAGCCTCTCTGCTGCCGACCAGGGTCTTCCGCATCTGCCATTTGCCAGCCAACCTG---CCCTCGG---ACTTACTATGTATCCAGTTCCTGCAAACGGCCTTGCAGTCCTGCGGTTTCTTACCGACCC------------GTCTGCCGCCCGGTCTATCGCCCGATCTGTTCTGGACTCCTCTCCTATAGGCAGCCCTATGTGACCTCCATCTCTTACCGTCCTGCCTGCTACCGTCCCTGCTACTCCATCCAGCGCCGCCCCATCTGCCTCACCTCCTACTCTTATCGTCCTATCTGTGCCCGCAGGCCTTGCACTGAGTTAGACTCCAGCAAAGAGGATTGCAAGAAGTTCACTGCCAGCCAACCGGATTGTGCTGACTCGGCCCGCTGCAAGGCAGAGGTCTCAGAAGAGGGTCCCTGCCAGCCCACTGAGTCCAAACCCAGCACTCCAATTACTCGTGAGGCTGCAGCCACTCAGCCCACTTCCAGCAAGCCTGCTGTCTGCTGAACCAGCCCC-----ACCAATTCCTGAGAAGTA--AGCCATGATTTGGAGAGAAAACTCGACTGCCCTCTCCAAAG----TTTAGTATAATTTAGGCAGGATC-------TTTTTCTTTCTG-------TACTGCC-CTCACCATCTGCTTAAGCTTCAGAGAACTCATCAGAAATGTCAGTAT i otoGar3.GL873537 I 60 C 0 s mm10.chr11 22096429 1212 - 122082543 ACCTCATCCTG---------------------------CCAGCCTGTCCTCTGCTTGCCTGCCACTTGCCAGCCAGTGATCTGCAAACCCTGCTGCTGCCAGCCAGTGATCTGTGAGCCCAGCTGCTGCTCAGCTGTCTGCGCTGTGCCTGCTTCCTGCCAACCAATGATCTGTGAGCCTGTGGTGTGTGAGCCTGCTTGCTGCCAGCCAGTGTGCCCGACACCTAGCTGCTGCCCATCTGTCTGCTCTGCAGCCAGTAGCTGCCAGCCAGTCGGCTGTGAAACCAGTCCCTGCGAGCCACCTTGCTCAGAGGCCAGTGCTTGTCAGCCATCTGCCTGTATGGCTCTGGTATGTGAGCCTGTTTGTCTCCGTCCTGTCTGCTGTGTCCAGGGCCCCTGTGAGCCACCATGTGTCTCTAGCAGCTGCCAAGACTCCTCATGCTGTGTCTCCAGCATCTGCCAACCTGTCTGCCCTGAGCCTAGTCCTTGCCTGCCATCGGTGTGTGTGCCTACCCCATGCCAACCTTCCTGCTACATAGTCAAACGATGCCGTTCTGTCAGCTGTGAGCCTATTTCCTGCCCATCTCCCTCCTGCCAACCTGCTTGCTGCCGTCCGGGCTCTTCGGCATCTGCCATCTGCCAACCAGCTTGCCCCCCTCGG---ACTTTCTATATACCTAGTTCCTGCAAGCCGCCTTGTAGTCC---AGTTTCTTGCCGCCCC------------------------ATTTGTCGCCCCATCTGTTCTGGACCCATCACCTTCAGGCAGCCATATGTGACATCCATCACTTACCGCCCAGCCTGCTACCGCTCCTGCTATTCCATACTACGCCGCCCGACCTGCCTAGCTTCTTACTCCTACCGTCCCGTCTGCTCCCGCCAGCCATGCACTGATTCTGACAACGATAAGTGTGATAGCAAAAAGCCAACTTCCAGTCAGCCTGACTGCGCTGACTCGACACCTGTCAAGACAGAGGTCTCAGATGAGACTCCCTGCCAGCCCTCTGAGATCAAACCTGCCAGCCCCATCACCCGTGAGGCTGCAGCCCCACAGCCTGCAGCCAGCAAGCCTGCTGACCGCTGAGCCAGCTCCAGCTCACCAATTCCTGCAACACAAGAGTCAAAAGCCAGAGAGAAACCAGGAAAGCTCCATGCACAG----CTCATTACAACATAGCTAGAATC-------TTGTTCACTCAA-------CACTGCCAGACACCACTTGCTTATGCTTCGGAGAACTCATCAAAAGTTCCAGCCT i mm10.chr11 C 0 C 0 s canFam3.chr9 21448422 1182 + 61074082 ACTCCTTCCTG---------------------------CCAGCCAGTCCTCTGTGTACCCACTCCCTGCCAGTCCATTCTGTGCAAACCCAGCTGCTGCCAGCCGGTCATCTGTGAGCCCAGCTGCTGTTCAGCTGTCTGCACTGTGCCAAGTTCCTGCCAA---------------CCAGTGGTCTGTGAACCCACTCGCTGTCAGCCAGTCTGCCCCACACCTAGCTGCTGTCCCTCTGTCCGCTCTGTGGCTAATAGCTGCCAGGCTGTCTGCTGTGACCCCAGTCCTTGTGAGCCATCTTGCTCAGAGCCCAGCAGCTGCCAGCCAGCTACCTGTGTGGCTCTGGTCTGTGAGCCTGTCTGTCTTCGTTCTGTCTGCTGTATTCCAAGCCCTTGTGAGCCACCTTGTGTCTCTAACACTTGCCAAGAGACCTCTTGTTGCATCTCCAGCCTCTGCCAACCCATCTGCTCTGAGCCCAGCCCTTGTTCAGCAAGTATCTGTGTGCCCAGGCCATGTCAACCTCCCTGCTATGTAGTCAAGCGCTGCCGGTCCATCTCCTGTGAGCCTGTTTCCTGCCCATCTACCTCCTGCCAACCTCTTTGCGGCCGCCCTGGGTCTTCTGCCTCTGCCATCTGCCAACCTACTTG---CTCTCGG---ACCTTCTACATACCCAGCTCCTGCAAACATCCTTGCACTCCTTCAGTTTCTTACCGCCCA------------------------ATCTGTCGCCCAATCTGCTCTGGACCCATCACTTATAGGCAGCCTTATGTGACCTCCATCTCCTATCGCCCTGCCTGCTACCGCCCATGCTACTCCATCCTGCGCCGCCCAGCCTGTGTCACTTCGCTCTCTTACCGTCCGGTCTGCTCTCGCCTGCCTTGTGCT------GACTTCTGTAAAAAGGATTGCAAGAAATCTACTTCCAGTCAACAAGATTGCACCGACTCAACATCCTGCAAGGCTGAGGTCTCAAATGCCAGTCCCTGCCAGACCACTGAAGCCAAACCCACCAGCCCAACCACCCGTGAGGCCGCAGCCAGCCCGCCTACTGCTGCCAAGCCTGCTGACCACTAATCTGGCCTCAGCCTATTGATTCCTGCAAAGCA--AACCTCCAGCTAGAGAGAAATCTTAACTGCCCTCCCCAAAG----CTCACAATGACTTAGTTAGAA-------------TTTTTCTG-------CATCATCACTCACCATCTTCTTATACTT-AAAGAACTCACCAGAAATATCCGTGT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 451804 1213 - 852752 GCCACCATCTGTGAGCCCTGTTCCGTGAGCAGCTGTGCCCAACCTGTGTGTTGTGAGACCACTTCCTGCCAACCCATCCTCTATGTGCCCACTTCCTGCCAACCGGTTGTCTGTGAGCCCAGCTGCTGCCCAACTGTCTGCACTGTGCCTAGTTCCTGCCAA---------------CCAGTGGTCTGTGAGCCTGCTTGCTGTCAGCCGGTGTGCCCAACGCCTAGCTGCTGTCCATCTGTCTGCTCTATGACCAGCAGTTCCCAGGCTGTCTGCTGTGATCCCAGTCCTTGTCAGCCTTCTTGCTCAGAGTCTAGTATCTGCCAGCCAGCTACCTGCACAGCCTTGGTCTGTAAGCCTGTTTGTCTCCGCCCTGTCTGCTGTGTTCCGAGCCCTTGTGAGCCACCTTGCATCTCCAGCACTTGCCAAGAGCCCCCTTGT---GTCTCCAGTATCTGCCAACCCATCTGCTCTGAGCCTAGACCCTGCTCACAAAGTGTCTGTGCACCCAGTCCATGTCAACCTACCTGCTACGTAGTCAAGCACTGCCGGTCCATCTGCTGTGAGCCTGTTTCCTGCACATCTACTTCCTGCCAACC------CTGCCAGCCAGGGTCTTCAGCATCAGCCATCTGCCAACGACCTTG---CTCTCGGCCCACTTTCTATATCCCTAGTTCCTACAAACAGCCTTGCAGTACTTCAGTTTCCTACCGTCCG------------------------ATTTGCCACCCATTTTGCTCTGGACCCATCACCTACAGGCAGCCATACCTGACATCCATCTCCTACCGCCCTGCCTTCTACCGTCCCTGTTACTCCATCCTGCGCCGTCCAGCCTATCTTACTTCTGTCTCCTACCACCCAGTCTGCTCCCGTGTACCTTGTACTGAGACTGACTCCTGTAAAGGGGTTTGTAAAACATCCACTTCCAGCCAACCAAATTGTACTGACTCAACAGCCTGCAAGTCGGAGGTCTCAGAGGCAAGTCGCTGCCAGCTCACTGCTGCCAAACCTACCAGTCCAACCACGTGTGAGGCTTTGGCTAGACAGCCTGCTGCCAGCAAAACTGCTGACTGCTGAACTGGCTTCAG--------------CAAAGCA--AGTCACCAGCTAGAGAGAAAACTTGACCATGCTCCCAAAAGTTCATTCATTATGACTTAGCTCGATTCTTTTTTTTCTTTTCTTCTG-------CATAATCACTCAGCATCTACTTATATTTCAAAGAACTCATCAGAAATGTCAATAG i dasNov3.JH570468 C 0 C 0 a score=1510317.000000 s hg38.chr17_GL383564v2_alt 132724 127 + 133151 CCTGATCACTTAAATGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTACGATTAAGCTGAGAAGAGCTGCTTTGCCACATCATCTCGGGTCTCTTTCCTG-CATGTA-G s panTro5.chr17 16321754 127 + 83181570 CCTGATCACTTAAATGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTACGATTAAGCTGAGAAGAGCTGCTTTGCCACATCATCTCGGGTCTCTTTCCTG-CATGTA-G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16226629 127 + 83442489 CCTGATCACTTAAATGAAGGCCTTCTGTTCAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTACGATTAAGCTGAGAAGAGCTGCTTTGCCACATCATCTTGGGTCTCTTTCCTG-CATGTA-G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4061767 126 + 4267968 CCTGATCACTTAAATGAAGGCCTTCTGGACAGTGAAAG-GGAGATATTCCAGGTTC-TGTCTTCTGCTGCGATTAAGCTGAGAAGAGCTGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CATGTA-G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042030 128 - 2193130 CCTGATCACTTAAGTGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCCATGTTCTTGTCTTCTGCTGCGATTAAGCTGAGAAGAGCCTCTTTGCCGCACCATCTCAGGTCTCTTTCCTG-CATGTAGG i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30116064 127 - 77216781 CCTGATCACTGAAATGAAGCCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTGCAATTAAGCTGAGAAGAACTGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CACGTA-G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28028926 127 - 80997621 CCTGATCACTGAAATGAAGCCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTGCAATTAAGCTGAGAAGAACTGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CACGTA-G i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085171 127 + 10377808 CCTGATCACTGAAATGAAGCCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTGCAATTAAGCTGAGAAGAACTGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CACGTA-G i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1970929 127 - 8458610 CCTGATCACTGAAACGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCTAGGTTCTTGTCTTCTGCTGCAATTAAGCTGAGAAGAACCGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CACGTA-G i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64915168 127 + 75148670 CCTGATCACTGAAATGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTGCAATTAAGCTGAGAAGAACTGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CACGTA-G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2155237 127 + 4244037 CCTGATCACTGAAACGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTGCAATTAAGCTAAGAAGAACCGCTTTGCCACATCATCTCAGGTCTCTTTCCTG-CACGTA-G i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2178227 127 + 4569836 CCTGATCACTGAAATGAAGGCCTTCTGGACAGTGAGAG-GGAGACATTCCAGGTTCTTGTCTTCTGCTGCAATTAAGCTGAGAAGAACCACTTTGCCACATCATCTCAGGTCTCTTTCCTG-TATGTA-G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134162 128 - 159171411 CCTAATCACTTAAATGAAGGCCTCCTGGACAGTGAGAG-GGAGACATTCCAGGTTCCTGCCTTCTGCTGCATTTAAGCTGAGAAAAGCCACTTTGCTTCATCATCTAGGGTCTCTCTCCTGGCATGAA-G i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1843802 128 + 3513951 CCTAATCACTTAACTGAAGGCCTCCTGGACAGCAAGAG-GGAGACATTCCAGGTTCATGCCTTCTGCTGCGATTAAGCTGAGAAAAGCCGCTTGGCTTCACCATCTAGGGTCTCTTTCCTGACATGAA-G i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892556 128 + 1920343 TCTAATCACTTAAATGAAGGCCTCCTGGACAGCAAGAG-GGAGACATTCCAGGTGCATGCCATCTGCTGCGATTAAGCCGAGAAAAACCGCTTTGCTTCATCATCTAGGGTCTCTTTCCTGACAAGAA-G i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7008891 128 - 7032639 CCTAATCACTTAAATGAAGGCCTCCTGGACAGCAAGAG-GGAGACATTCCAGGTTCATGCCTTCTGCTGCGACTAAGCTGAGAAAAGCCACTTTGCTTCATCATCTAAGGTCTCTTTCCTGACATGAA-G i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3014021 118 + 8555354 CCCAGTGGTCCAAGTGAAGGCCTCCTGGGCACTGACAG-TGGTGCATTCCTAGTCCCTGTTTCCTGCTGCTATTAAGCTGAGAAGA--------GCCATGTCATCTCAAGCCTTTTTCCTGACATAA--- i proCoq1.NW_012135969v1 C 0 I 2 s otoGar3.GL873537 22836057 91 + 28711273 TCTAACGGTCCAAGGGA---------------------------CATTCTGAGTCCCTGCTTCCTGCTACT-TTAAGCTGAGAAGA--------GACATGTCATCTCAAGTCGCTTTCCTGACATAA--- i otoGar3.GL873537 C 0 I 1 s mm10.chr11 22097641 109 - 122082543 CCTAGTGGTCCCAGTGAAGACCTCCTGCACAGAGAAAG-GGAAG------------TTGTCTTCTGTTGCCAGTACACTGAGAA---CTGCTTTGCCGCATCGTT---GGGCTCTTGCCTA-CTCAAG-A i mm10.chr11 C 0 C 0 s canFam3.chr9 21449604 129 + 61074082 CCTAATGGTCCAAATGAAGGCCCCCTGGACACCTAGAGTGGAGACATTCTGGATTCCTGCCTGCTGCTGCCATTAAGCTGAGAAGAGCTGCTTTACCACATCATTTTGAGTCTCTTTCCCAGCATTAA-G i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 453017 112 - 852752 ACTAATGATTCAAATGAAGTCTTCGTAG-CATTGAGAG-GGGGATGTTCTGGGTTTCTG---TCAGCTGCCACCAAGCTGGGAAGAGCTACTTTATTACAT-ATCTCAAGTCTCTTTC------------ i dasNov3.JH570468 C 0 C 0 e micMur3.chr16 35927274 120 - 65901067 I a score=2567754.000000 s hg38.chr17_GL383564v2_alt 132851 170 + 133151 TTTTTTCTGTCATCATGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAGGTAAA--ATATGTAACTGTCCAATAAAGGTGGCTAAGCTGAAGCAAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC s panTro5.chr17 16321881 170 + 83181570 TTTTTTCTGTCATCATGTATGTTCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAGGTAAA--ATATGTCACTGTCCAATAAAGGTGGCTAAGCTGAAGCAAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i panTro5.chr17 C 0 C 0 s panPan2.chr17 16226756 170 + 83442489 TTTTTTCTGTCATCATGTATGTTCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGAACTTCTCCAATCAGGTAAA--ATATGTCACTGTCCAATAAAGGTGGCTAAGCTGAAGCAAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4061893 170 + 4267968 TTTTTTCTGTCATCATGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGGCTTCTCCAATCAGGTAAA--ATATGTAACTGTCCAATAAAGGTGGCTAAGCTGAAGCAAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042158 170 - 2193130 TTTTTTCTGTCATCTTGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAGGTAAA--ATACGTAACTGTCCAATAAAGGTGGCTAAGCTGAAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30116191 170 - 77216781 TCTTTTCTGTCACCACGTATGTGCTCTCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAAGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGAAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCGG-TGACTTGCTTT i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28029053 170 - 80997621 TCTTTTCTGTCACCACGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAAGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGGAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCGG-TGACTTGCTTT i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085298 170 + 10377808 TCTTTTCTGTCACCACGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAAGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGAAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCGG-TGACTTGCTTT i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1971056 170 - 8458610 TCTTTTCTGTCACCATGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAAGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGAAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTGC i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64915295 170 + 75148670 TCTTTTCTGTCACCACGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAAGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGAAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2155364 170 + 4244037 TCTTTTCTGTCACCACGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCTCCAATCAAGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGAAGCGAC------TTGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2178354 170 + 4569836 TCTTTTCTGTCACCATGTATGTGCTCCCTTGCTATGCATGCTTGTGTTCCTTAGGGACTTCACCAATCAGGTAAA--ACATGTAACTGTCCAATAAAGGTGGTTAAGCTGAAGCGAC------TCGCTGTTCTCCTTG-------CTCTTCCATTAATGCCATAGTCTCATCAG-TGACTTGCTTC i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134290 170 - 159171411 TTTTTTCTATTGTCATCTATGTGCTCCATTGCTATGCACACTTGTGTTCCTTAGGGACTTCTCTGATCAGGTAGA--ATATGTAACTGTCCAATAAAGGTGGCTAACCTGAAGCAAG------TTTCTGTTCTCTTTG-------TTCTCCAGTCAATGCCGTAGTCTCATCAG-TGAGTTGCTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1843930 170 + 3513951 TTTTTTCTGTCGTCATCTATGTGCTCCCTTGCTCTGCACACTTGTGTTCCTTAGGGACTTCTCCGATCAGGTAGA--ATATGTAACTGTGCAATAAAGGTGGCTAACCTGAAGCGAC------TTGCTGTTCTCTTTG-------CTCTCCCGTCAATGCTGTAGTCTCATCAG-TGAGTTGCTTC i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892684 170 + 1920343 TTTTTTCTATTGTCATCTATGTTCTCCCTTGCTATGCACATTTGTGTTCCTTAGGGACTTCTCCTATCAGGTAGA--ATATGTAACTGTCCAATAAAGGTGGCTAACCTGAAGCAGC------TTGCTGTTCTCTTTG-------CTCTCCCATCAATGCCATAGGCTCATCAG-TGAGTTGCATC i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7009019 170 - 7032639 TTTTTTCTATTGTCATCTATGTGCTCCCTTGCTGTGCATACTTGTGTTCCTTAGGGACTTCTCCAATCAGGTAAA--ATATGTAACTGTCCAATAAAGGTGGCTAACCTGAAGCAAC------TTGCTGTTCTCTTTG-------CTCTCCTGTCAATGCCATAGTCTCATCAG-TGAGTTGCTTC i aotNan1.NW_018502359v1 C 0 C 0 s micMur3.chr16 35927394 166 - 65901067 TTTTTTCTGTCCTCATGCGTGTGCTCCCTTGCTGTGCATACTTGTGTTCCTTGGGGACTTCTCTAATGAGGTAAA--ATATTTA----TCTAATAAAAATGGCTTAGTTGAAGTGAC------ATGCTATTTTCATTG-------CACTTCTGTTAATGCCATAGTTGTATTAG-TGACTTGCTTC i micMur3.chr16 I 120 N 0 s proCoq1.NW_012135969v1 3014141 170 + 8555354 TTTTTTCTGTCCTCATGCATGTACTCCCTTGCTGTGTATGCTTGTGTTCCTTGGGGACTTCTTTAATGAGGTAAA--ATATTTATCTGTCTAATAAAAATGGCTTAGTTGAAGTGAC------ATGCTATTTTCATTG-------CACTCCTGTTAATGCCATAGTTGCATCAG-TGACTTGCTTT i proCoq1.NW_012135969v1 I 2 C 0 s otoGar3.GL873537 22836149 170 + 28711273 AGTTTTCTGTCTGGATGTATGTGCTCTCTTGTTGTGCATGCTTGTGCTTCTTGGGGACTTCTTTAATGTGGTAAA--ACATTTAACTGTCCAATTAAATTGGCTAAGTTGAAGTGAC------CTGATGTTCTCATTG-------TCGTTTTGTTAATATTATAGTTGCATCAG-TGACTTGCTTc i otoGar3.GL873537 I 1 I 12 s mm10.chr11 22097750 157 - 122082543 TGCTTTCTGTCCTCATGTA----------------------TTGTGTTCCTTGGGAGCACCTGCAGCGAGAT-----ATATTTAATCGTGCAATAAAAGTGGCTAAGTTGAAGTGGCACATGGTTCTTGCTTTTCTTGGGGAACCCTCCCCTGACCAT-CTAtccttccatctg-tccctcctttc i mm10.chr11 C 0 I 2 s canFam3.chr9 21449733 169 + 61074082 TTTTTTCTTTCCTCATGCATGTGCTCCCTTGCTGGGTGTGCTCACATTCCTTGGGGACCTCTTCCATAAAAAAAAAGATATTTACCTGTCCAATAAA-GTGGCTAAGTTGAAGTGAC------ATGCTGTTTTCATTG-------CTCT---GTTAATGTCATATTCTCTTGAGCTAACTTGTTTT i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 453129 166 - 852752 ------CTGGCGTCATGCATGTGCTTCCTTCCTGTGTTTGCTCTTGTTCCTTGGTGGCCTTTTAAATGAGATAAAG-ATATTTAACTGTTCAATAAACATGGCAAAATTGAAGTGAC------ACACTGTTCTCATTG-------TTCTCCTATTATTGTCATATTATCATTAGCTGACTTATTTT i dasNov3.JH570468 C 0 C 0 a score=468723.000000 s hg38.chr17_GL383564v2_alt 133021 35 + 133151 TTCTTTAACAGCAGCtccattcaaccatccatcca s panTro5.chr17 16322051 35 + 83181570 TTCTTTAACAGCAGCtccattcaaccatccatcca i panTro5.chr17 C 0 C 0 s panPan2.chr17 16226926 35 + 83442489 TTCTTTAACAGCAGCtccattcaaccatccatcca i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4062063 35 + 4267968 TTGTTTAACAGCAGCtccattcaaccatccatcca i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042328 32 - 2193130 ---TTTAACAGCAGCtccattcaaccatccatcca i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30116361 35 - 77216781 TTCTTCGACAGCAGCTTcattcaaccatccatcca i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28029223 35 - 80997621 TTCTTCGACAGCAGCTTCATTCAACCATCCATCCA i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085468 35 + 10377808 TTCTTCGACAGCAGCTTCATTCAACCATCCATCCA i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1971226 35 - 8458610 TTCTTCGACAGCAGCTTCATTCAACCATCCATCCA i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64915465 35 + 75148670 TTCTTCGACAGCAGCTTcattcaaccatccatcca i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2155534 35 + 4244037 TTCTTCGACAGCAGCTTCATTCAACCATCCATCCA i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2178524 35 + 4569836 TTCTTCGACAGCAGCTTcattcaaccatccatcca i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134460 35 - 159171411 ATCTTTGACAGCATCTCCATTCAACCATCTGTCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1844100 35 + 3513951 ATCTTTGACAGCAGCTCCATTCAACCATCCGTCCA i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892854 35 + 1920343 AGCTTTGACAGCAGCTCCATTCAACCATCTGTCCA i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7009189 35 - 7032639 ATCTTTGACAGCAGCTCCATTCAACCATCCGTCCA i aotNan1.NW_018502359v1 C 0 C 0 s proCoq1.NW_012135969v1 3014311 35 + 8555354 ATCTTTGAGAGCAGCtccatccatccattcatcca i proCoq1.NW_012135969v1 C 0 N 0 s otoGar3.GL873537 22836331 29 + 28711273 atct------gttgatccatccatccattcatcca i otoGar3.GL873537 I 12 C 0 s mm10.chr11 22097909 28 - 122082543 ttcttcc-------ctcccttcttccttctattct i mm10.chr11 I 2 C 0 s canFam3.chr9 21449902 35 + 61074082 GTTTTTGAGAGCAGCATCATTCattcatctatcca i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 453295 35 - 852752 GTCTTTAAGAGCAGCCccatccatccatccatcca i dasNov3.JH570468 C 0 C 0 a score=130058.000000 s hg38.chr17_GL383564v2_alt 133056 15 + 133151 cccac---ccatccctcT s panTro5.chr17 16322086 15 + 83181570 cccac---ccatccctcT i panTro5.chr17 C 0 C 0 s panPan2.chr17 16226961 15 + 83442489 cccac---ccatccctcT i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4062098 15 + 4267968 cccac---ccatccctcT i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042360 15 - 2193130 cccac---ccatccctcA i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30116396 15 - 77216781 cccac---ccatccctcA i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28029258 15 - 80997621 CCcac---ccatccctca i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085503 15 + 10377808 CCcac---ccatccctca i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1971261 15 - 8458610 CCcac---ccatccgtca i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64915500 15 + 75148670 cccac---ccatccctcA i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2155569 15 + 4244037 CCcac---ccatccgtca i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2178559 15 + 4569836 cccac---ccatccctcA i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134495 18 - 159171411 TCCACTCAtcatccctca i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1844135 18 + 3513951 CCCACTCAtcattcctca i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892889 18 + 1920343 CCCACTCAtcatccccca i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7009224 18 - 7032639 CCCACTAATCATCCCTCA i aotNan1.NW_018502359v1 C 0 C 0 s otoGar3.GL873537 22836360 15 + 28711273 cccag---ccagccatct i otoGar3.GL873537 C 0 N 0 s mm10.chr11 22097937 15 - 122082543 tccat---ctatcccact i mm10.chr11 C 0 C 0 s canFam3.chr9 21449937 4 + 61074082 -------ataa------- i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 453330 15 - 852752 tccat---ccatccatcc i dasNov3.JH570468 C 0 C 0 a score=13073.000000 s hg38.chr17_GL383564v2_alt 133071 1 + 133151 G s panTro5.chr17 16322101 1 + 83181570 G i panTro5.chr17 C 0 C 0 s panPan2.chr17 16226976 1 + 83442489 G i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4062113 1 + 4267968 G i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042375 1 - 2193130 G i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30116411 1 - 77216781 G i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28029273 1 - 80997621 g i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085518 1 + 10377808 g i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1971276 1 - 8458610 g i cerAty1.NW_012006043v1 C 0 C 0 s chlSab2.chr16 64915515 1 + 75148670 G i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2155584 1 + 4244037 g i manLeu1.NW_012106252v1 C 0 C 0 s colAng1.NW_012122154v1 2178574 1 + 4569836 G i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134513 1 - 159171411 g i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1844153 1 + 3513951 g i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892907 1 + 1920343 g i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7009242 1 - 7032639 G i aotNan1.NW_018502359v1 C 0 C 0 s mm10.chr11 22097952 1 - 122082543 g i mm10.chr11 C 0 N 0 s dasNov3.JH570468 453345 1 - 852752 a i dasNov3.JH570468 C 0 C 0 e canFam3.chr9 21449941 0 + 61074082 C a score=814986.000000 s hg38.chr17_GL383564v2_alt 133072 75 + 133151 -----GCAT-TATTAGACAGCAGCTAGGTGCCAGGGACTGTGTTTAGCTCTAAGAAT----AAACATA-AGAAGTCTCAGTCTTTG s panTro5.chr17 16322102 75 + 83181570 -----GCAt-tattagacagcagctaggtgccagggactgtgtttagctctaagaat----aaacata-agaagtttcagtctttg i panTro5.chr17 C 0 C 0 s panPan2.chr17 16226977 75 + 83442489 -----GCAt-tattagacagcagctaggtgccagggactgtgtttagctctaagaat----aaacata-agaagtttcagtctttg i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4062114 75 + 4267968 -----GCAt-tattagacagcagctaggtgccagggactgtatttagctctaagaat----aaacata-agaagtctcagtctttg i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042376 75 - 2193130 -----GCAt-tattagacagcagctaggtgccagggactgtgtttagctctaagaat----aaacata-agaagtctcagtctttg i nomLeu3.chrUn_GL397460_1 C 0 C 0 s rheMac8.chr16 30116412 72 - 77216781 -----GCAt-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aaac----agaagtctcagtctttg i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28029274 72 - 80997621 -----gcat-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aaac----agaagtctcagtctttg i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085519 72 + 10377808 -----gcat-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aaac----agaagtctcagtctttg i macNem1.NW_012014910v1 C 0 C 0 s cerAty1.NW_012006043v1 1971277 72 - 8458610 -----gcat-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aaac----agaagtctcagtctttg i cerAty1.NW_012006043v1 C 0 N 0 s chlSab2.chr16 64915516 72 + 75148670 -----GCAt-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aaac----agaagtctcagtctttg i chlSab2.chr16 C 0 C 0 s manLeu1.NW_012106252v1 2155585 72 + 4244037 -----gcat-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aaac----agaagtctcagtctttg i manLeu1.NW_012106252v1 C 0 N 0 s colAng1.NW_012122154v1 2178575 72 + 4569836 -----GCAt-tattagatagcagctaggtgccagggattgtgtttagctctaaggat----aatc----agaagtctcagtctttg i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134514 75 - 159171411 -----gcat-tattagatagcagctaggtgccggggactgtgtttagctctaagaat----aaacata-gaaaggctcagtctttg i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1844154 75 + 3513951 -----gcat-tattagatagcagctcggtgccggggactgtgcttagctctaagaat----acacata-aaaagtctcagtctttg i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892908 75 + 1920343 -----gcat-tattagatagcagctaggtgccggggactgtgtttagctctaagaat----aaacata-aaaagtctcagtctttg i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7009243 75 - 7032639 -----GCAT-TATTAGATAGCAGCCAAgtgccagggactgtgtttagctctaagaat----aaacata-aaaagtctcagtctttg i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21449941 73 + 61074082 -----gctt-tattagacagctgttaggt---agggactgtgtttggctgtaggaatgagaaaac----taaagtctcggtccttg i canFam3.chr9 C 0 C 0 s dasNov3.JH570468 453346 82 - 852752 tccatccatccatccaAAAAGAATTATTTTCAAGGGACTGAGTTAGGCTCTAGGATT----GAAAAGACAAATGTCTCAGTCCTTG i dasNov3.JH570468 C 0 N 0 a score=15312.000000 s hg38.chr17_GL383564v2_alt 133147 2 + 133151 TT s panTro5.chr17 16322177 2 + 83181570 ct i panTro5.chr17 C 0 C 0 s panPan2.chr17 16227052 2 + 83442489 ct i panPan2.chr17 C 0 C 0 s gorGor5.CYUI01015385v1 4062189 2 + 4267968 ct i gorGor5.CYUI01015385v1 C 0 C 0 s nomLeu3.chrUn_GL397460_1 2042451 2 - 2193130 ct i nomLeu3.chrUn_GL397460_1 C 0 N 0 s rheMac8.chr16 30116484 2 - 77216781 ct i rheMac8.chr16 C 0 C 0 s macFas5.chr16 28029346 2 - 80997621 ct i macFas5.chr16 C 0 C 0 s macNem1.NW_012014910v1 2085591 2 + 10377808 ct i macNem1.NW_012014910v1 C 0 C 0 s chlSab2.chr16 64915588 2 + 75148670 ct i chlSab2.chr16 C 0 C 0 s colAng1.NW_012122154v1 2178647 2 + 4569836 tt i colAng1.NW_012122154v1 C 0 C 0 s calJac3.chr5 46134589 2 - 159171411 ct i calJac3.chr5 C 0 C 0 s saiBol1.JH378271 1844229 2 + 3513951 ct i saiBol1.JH378271 C 0 C 0 s cebCap1.NW_016107730v1 1892983 2 + 1920343 ct i cebCap1.NW_016107730v1 C 0 C 0 s aotNan1.NW_018502359v1 7009318 2 - 7032639 ct i aotNan1.NW_018502359v1 C 0 C 0 s canFam3.chr9 21450014 2 + 61074082 tt i canFam3.chr9 C 0 C 0 a score=17381.000000 s hg38.chr17_GL383564v2_alt 133149 2 + 133151 CT s panTro5.chr17 16322179 2 + 83181570 ct i panTro5.chr17 C 0 N 0 s panPan2.chr17 16227054 2 + 83442489 ct i panPan2.chr17 C 0 N 0 s gorGor5.CYUI01015385v1 4062191 2 + 4267968 ct i gorGor5.CYUI01015385v1 C 0 N 0 s rheMac8.chr16 30116486 2 - 77216781 ct i rheMac8.chr16 C 0 N 0 s macFas5.chr16 28029348 2 - 80997621 ct i macFas5.chr16 C 0 N 0 s macNem1.NW_012014910v1 2085593 2 + 10377808 ct i macNem1.NW_012014910v1 C 0 N 0 s chlSab2.chr16 64915590 2 + 75148670 ct i chlSab2.chr16 C 0 N 0 s colAng1.NW_012122154v1 2178649 2 + 4569836 ct i colAng1.NW_012122154v1 C 0 N 0 s calJac3.chr5 46134591 2 - 159171411 ct i calJac3.chr5 C 0 N 0 s saiBol1.JH378271 1844231 2 + 3513951 ct i saiBol1.JH378271 C 0 N 0 s cebCap1.NW_016107730v1 1892985 2 + 1920343 ct i cebCap1.NW_016107730v1 C 0 N 0 s aotNan1.NW_018502359v1 7009320 2 - 7032639 ct i aotNan1.NW_018502359v1 C 0 N 0 s canFam3.chr9 21450016 2 + 61074082 ct i canFam3.chr9 C 0 N 0