##maf version=1 scoring=roast.v3.3 a score=6600.000000 s hg38.chr20_KI270871v1_alt 0 1 + 58661 C s panTro5.chr20 65569600 1 + 66533130 c i panTro5.chr20 N 0 C 0 s panPan2.chr20 61339223 1 + 62195757 c i panPan2.chr20 N 0 C 0 s gorGor5.CYUI01015750v1 749224 1 - 1017659 c i gorGor5.CYUI01015750v1 N 0 C 0 s rheMac8.chr10 91959487 1 - 92844088 c i rheMac8.chr10 N 0 C 0 s macFas5.chr10 95607034 1 + 96509753 c i macFas5.chr10 N 0 C 0 s macNem1.NW_012014244v1 16062486 1 - 16982598 c i macNem1.NW_012014244v1 N 0 C 0 s cerAty1.NW_012001373v1 2905667 1 - 3785965 c i cerAty1.NW_012001373v1 N 0 C 0 s chlSab2.chr2 89578142 1 - 90373283 c i chlSab2.chr2 N 0 C 0 s colAng1.NW_012114444v1 4686071 1 - 5823884 c i colAng1.NW_012114444v1 N 0 C 0 s calJac3.chr5 57392628 1 + 159171411 c i calJac3.chr5 N 0 C 0 s saiBol1.JH378156 15514180 1 + 16356641 c i saiBol1.JH378156 N 0 C 0 a score=14976.000000 s hg38.chr20_KI270871v1_alt 1 2 + 58661 ta s panTro5.chr20 65569601 2 + 66533130 ta i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339224 2 + 62195757 ta i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749225 2 - 1017659 ta i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91959488 2 - 92844088 ta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607035 2 + 96509753 ta i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16062487 2 - 16982598 ta i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2905668 2 - 3785965 ta i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578143 2 - 90373283 ta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5452954 2 + 6149316 ta i manLeu1.NW_012104365v1 N 0 C 0 s colAng1.NW_012114444v1 4686072 2 - 5823884 ta i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57392629 2 + 159171411 ta i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15514181 2 + 16356641 ta i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22139712 2 + 22939663 tg i otoGar3.GL873542 N 0 C 0 a score=748797.000000 s hg38.chr20_KI270871v1_alt 3 167 + 58661 cacttttaaatagttaa-ttttaggttgcacaagtctcacctcaa-ttttagaaa----GGATA---GGGGGTTCCCACTCCAAGAGCAAGCAAAAGCAGCTG-CGACGCCACAGGGTGGCCACAGTAGCGTGGCCACCAC-ATCCATCCCCGGAGAG----------------GATGGACCAGGAGAGGATGC s panTro5.chr20 65569603 167 + 66533130 cacttttaaatagttaa-ttttaggttgcatgagtctcacctcaa-ttttagaaa----GGATA---AGGGGTTCCCACTCCAAGAGCAAGCAAAAGCAGCTG-CGATGCCACAGGGTGGCCCCAGTAGCTCGGCCACCAC-GTCCATCCCCGGAGAG----------------GATGGACCAGGACAGGATGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339226 167 + 62195757 cacttttaaatagttaa-ttttaggttgcatgagtctcacctcaa-ttttagaaa----GGATA---AGGGGTTCCCACTCCAAGAGCAAGCAAAAGCAGCTG-CGATGCCACAGGGTGGCCCCAGTAGCTCGGCCACCAC-GTCCATCCCCGGAGAG----------------GATGGACCAGGACAGGATGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749227 166 - 1017659 cacttttaaatagttaa-ttttaggttgcatgagtctcacctcaa--tttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCAAAAGCAGCTGCCAATGCCACAGGGTGGCCCCAGTAGCTCGGCCACCAC-GTCCATCCCCGGAGAG----------------GATGGACCAGGAGAGGATGT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91959490 152 - 92844088 cacttttaaatcgttaa-ttttaggttgcatgagtgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCACAAGAGGCTG-TGATGCCGCCGGGT-GTCCCAGTGGCTCGGGCACCAC-CTCCATCCCCGGAGAG----------------GGCGG------------CGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607037 152 + 96509753 cacttttaaattgttaa-ttttaggttgcatgagtgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCACAAGAGGCTG-TGATGCCACCGGGT-GTCCCAGTGGCTCGGGCACCAC-CTCCATCCCCGGAGAG----------------GGCGG------------CGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16062489 152 - 16982598 cacttttaaatcgttaa-ttttaggttgcatgagtgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCACAAGAGGCTG-TGATGCCACCGGGT-GTCCCAGTGGCTCGGGCACCAC-CTCCATCCCCGGAGAG----------------GGCGG------------CGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2905670 152 - 3785965 cacttttaaatcgttaa-ttttaggttgcatgaatgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCACAAGAGGCTG-TGATGCCACTGGGT-GTCTCAGTGGCTGGGGCACCAC-CTCCATCCCCGGAGAG----------------GGCAG------------CGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578145 152 - 90373283 cacttttaactcgttaa-ttttaggttgcatgagtgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCACAAGAGGCTG-TGATGCTGCCGGGT-GTCCCAGTGGCTCAGGCACCAC-CTCCATCCCCGGAGAG----------------GAAGG------------CGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5452956 152 + 6149316 cacttttaaatcgttaa-ttttaggttgcatgaatgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCGCTCCAAGAGCAAGCACAAGAGGCTG-TGATGCCACCGGGT-GTCCCAGTGGCTCGGGCACCAC-CTCCATCCCTGGAGAG----------------GGCGG------------CGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686074 152 - 5823884 cacttttaaatagttaa-ttttaggttgcatgagtgt-aactcaa-ttttagaaa----GGAT----GGGGGTTCCCACTCCAAGAGCAAGCATAAGAGGCTG-TGATGCCACCGGGT-GTCCCAGTGGCTCGGGCACCAC-ATCCATCCCAGGAGAG----------------GGCGG------------TGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57392631 174 + 159171411 cactctcaaatagttaa-ttttatgttgcccaagtttcacctcaa-ttttagaaaGGGAGGGA----GGAGGTTTCCACTCCCAGAGCAATCGAAAGAGGCAG-CAATGCCTCAGGTG-GCCCTGGTAGCTTGGGCGCCACGGTCCATCCCCGGAGGGGCTCAGTCTCAGATCAGGGGG------------CGC i calJac3.chr5 C 0 I 6 s saiBol1.JH378156 15514183 175 + 16356641 tactttcaaatagttcatttttctgttgcccaagtttcacttcag-ttttagaaaGTGGGGAG----GGAGGTTTCCACGCCCAGAGCAAGCGAAAGAGGCAG-CGATGCCTCAGGGG-GTCCTGGTAGCTTGGGTGCCAGGGTCCATCCCCGGAGGGACTCAGCCTCAGATCGGGGGG------------CGC i saiBol1.JH378156 C 0 I 6 s otoGar3.GL873542 22139714 96 + 22939663 cacttttaaacagctcc-ctttatgttgcatgaatttcacctcag-tt---gaaa----GGAGC---GGAGCTTCCTGCTCCCAG-GCAGGAAGAGGGGAGTG-TGGGGC------------------------------------------------------------------------------------ i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47067650 130 + 47698779 cactttcaagtggccagtttttatgttacgtgaattc-gcctcaaAAAGAAGAAA----GGGCAAAGGGGGGTCGCTGCTCAAAGAG---GCGGCCGGGCCCC-TGCTGGCACCGGG--GCCGCCGGACGGCGGGAGGCAG----------------------------------------------------- i canFam3.chr24 N 0 C 0 a score=59535.000000 s hg38.chr20_KI270871v1_alt 170 6 + 58661 GGCCAC s panTro5.chr20 65569770 6 + 66533130 GGCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339393 6 + 62195757 GGCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749393 6 - 1017659 GGCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91959642 6 - 92844088 GGCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607189 6 + 96509753 GGCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16062641 6 - 16982598 GGCCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2905822 6 - 3785965 GGCCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578297 6 - 90373283 GGCCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453108 6 + 6149316 GGCCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686226 6 - 5823884 GGCCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57392811 6 + 159171411 GGCCAG i calJac3.chr5 I 6 C 0 s saiBol1.JH378156 15514364 6 + 16356641 GGCCGG i saiBol1.JH378156 I 6 C 0 s cebCap1.NW_016107870v1 360864 6 + 1231380 GGCCAG i cebCap1.NW_016107870v1 N 0 C 0 s aotNan1.NW_018500483v1 1923164 6 + 11732439 GGCCAG i aotNan1.NW_018500483v1 N 0 C 0 s otoGar3.GL873542 22139810 6 + 22939663 GGCCAC i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47067780 6 + 47698779 AGCCTG i canFam3.chr24 C 0 C 0 a score=506606.000000 s hg38.chr20_KI270871v1_alt 176 39 + 58661 ACCCACCTTCTGAGTTCTGCCGTGACGCGGCACCCTTGA s panTro5.chr20 65569776 39 + 66533130 ACCCACCTTCTGAGTTCTGCCGTGACGCGGCGCCCTTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339399 39 + 62195757 ACCCACCTTCTGAGTTCTGCCGTGACGCGGCGCCCTTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749399 39 - 1017659 ACCCACCTTCTGAGTTCTGCCGTGACGCGGCGCCCTTGA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91959648 39 - 92844088 ACCCACCTTCGGAGTTCTGCCGTGACGCGGCGCCCTTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607195 39 + 96509753 ACCCACCTTCGGAGTTCTGCCGTGACGCGGCGCCCTTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16062647 39 - 16982598 ACCCACCTTCGGAGTTCTGCCGTGACGCGGCGCCCTTGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2905828 39 - 3785965 ACCCACCTTCGGAGTTCTGCCGTGACGCGGCGCCCTTGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578303 39 - 90373283 ACCCACCTTCGGAGTTCTGCCGTGATGCGGCACCCTTAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453114 39 + 6149316 ACCCACCTTCGGAGTTCTGCCGTGATGCGGCGCCCTTGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686232 39 - 5823884 ACCCACCTTCTGAGTTCTGCCGTGACGCGGCGCCCTTGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57392817 39 + 159171411 ACCCACCTTCTGAGTTCTGCCGCGACGCAGCACCCTTGA i calJac3.chr5 C 0 M 1263 s saiBol1.JH378156 15514370 39 + 16356641 ACCCACCTTCTGAGTTCTGCCGAGATGCGGCGCCCTTGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 360870 39 + 1231380 ACCCACCTTCTGAGTTCTGCCGAGATGCAGCACCCTTGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923170 39 + 11732439 ACCCACCTTCTGAGTTCTGCCGAGACGCAGCACCCTTGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22139816 39 + 22939663 ACCCACCTTCCGAGTTCTGCCGAGATGCGGCACCCTTGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181088340 39 + 182113224 ACCCACCTTCTGAATTCTGCCGGGATGCAGCACCCTTGA i mm10.chr2 N 0 C 0 s canFam3.chr24 47067786 39 + 47698779 ACCTACCTTCCGAGTTCTGTCGGGACGCGGCGCCCTTGA i canFam3.chr24 C 0 C 0 a score=3096696.000000 s hg38.chr20_KI270871v1_alt 215 283 + 58661 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCTCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCACGGGAacc------------gacaga-----cagacagaaaaacagGGA--------GAGAAGTCACTCTGCAAAGAACACAGGC-------C---GTGTCTGCTCATGGCCGACG-CC s panTro5.chr20 65569815 289 + 66533130 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCACGGGAacc------------gacaga-----cagacagacagacagaaaaacagC--GAGAAGTCACTCTGCAAAGAACACAGGC-------C---GTGTCTGCTCATGGCCGACG-CC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339438 289 + 62195757 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCACGGGAacc------------gacaga-----cagacagacagacagaaaaacagC--GAGAAGTCACTCTGCAAAGAACACAGGC-------C---GTGTCTGCTCATGGCCGACG-CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749438 289 - 1017659 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCT-CCACGGGAacc------------gacaga-----cagacagacagacagaaaaacagCGAGAGAAGTCACTCTGCAAAGAACACAGGC-------C---GTGTCTGCTCATGGCCAACG--C i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91959687 295 - 92844088 TGCGGAAAGCCTGGCGCGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGCGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCTACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCATGGGAacc----ga----cagacaga-----cagacagacaaacagaaaaacagCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---GTGTCTGCTCACGGCCAACG-CC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607234 295 + 96509753 TGCGGAAAGCCTGGCGCGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGCGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCTACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCATGGGAacc----ga----cagacaga-----cagacagacaaacagaaaaacagCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---GTGTCTGCTCACGGCCAACG-CC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16062686 295 - 16982598 TGCGGAAAGCCTGGCGCGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGCGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCTACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCATGGGAACC----ga----cagacaga-----cagacagacagacagaAAAACAGCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---GTGTCTGCTCACGGCCAACG-CC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2905867 295 - 3785965 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCTACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCATGGGAACC----ga----cagacaga-----cagacagacagacagaAAAACAGCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---GTGTCTGCTCACGGCCAACG-CC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578342 295 - 90373283 TGCGGAAAGCCTGGCGCGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCAACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCTCATGGGAACC----ga----cagacaga-----cagacagacagacagaAAAACAGCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---GTGTCTGCTCACGGCCAACG-CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453153 299 + 6149316 TGCGGAAAGCCTGGCGCGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACAGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCTACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCATGGGAACCgacaga----cagacaga-----cagacagacagacagaAAAACAGCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---GTGTCTGCTCACGGCCAACG-CC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686271 295 - 5823884 TGCGGAAAGCCTGGCGCGCCCGGCTGCGGTCCCCAAAGCTCCAGCTCTTGGGCACCTTGCTGGGGCTGTCCTCGAGGCTCTGGTCGGCGCTGGGCGACCGCCGCACTGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCTACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCATGGGAACC----ga----cagacaga-----cagacagacagacagaAAAACAGCGAGAGAAGTCACTCTGGAAAGAACACAGAC-------C---ATGTCTGCTCATGACCAACG-CC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514409 279 + 16356641 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCGCCGAAGCTCCAGCTCTTGGGCACCTTGCTAGGGCTGTCTTCGAGGCTCTGGTCGGCGCTGGGGGACCGTCGCACCGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACACCTCGAGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCACGGGAACC-----------------------------GACAAACAGAAACACAGCGAGAGAAGTCACTCCCGAGAGAAGGCAGGC-------C---GCGCTGGCTCTCGGCAGACC-CT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 360909 283 + 1231380 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCTCCGAAGCTCCAGCTCTTGGGCACCTTGCTAGGGCTGTCTTCAAGGCTCTGGTCGGCGCTGGGGGACCGCCGCACCGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACACCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCACGGGAACC-------------------------GACAGACAAACAGAAACACAGCGAGAGAAGTCACTCCAGAGAGAACACAGGC-------C---GTGTCGGCTCTCAGCAGACC-CT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923209 283 + 11732439 TGCGGAAAGCCTGGCGTGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTACTAGGGCTGTCTTCAAGGCTCTGGTCGGCGCTGGGTGACCGCCGCACCGTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCAGCCACACCTCGGGGACTGGAGAAGACACGATCTTTCAAACTGACCTTCTGGCTGCTCCCACGGGAACC-------------------------GACAGACAAACAGAAACACAGCGAGAGAAGTCACTCCAGAGAGAACACGGGC-------C---GTGTCGGCTCCCGGCAGACC-CT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22139855 289 + 22939663 TCCGGAAGGCCTGGCGTGCCCGGCTGCGGTCCCCAAAGCTCCAGCTCTTGGGCACCTTGCTTGGGCTGTCCTCCAAGCTCTGGTCTGCGCTGGGTGACCGCCGGACAGTCTGGGCCTGAGGGGACCCCTTCCCCTTGGCAGCCACGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGACTGCTCCCGCGAGAACC------------AATAGA-----CAGACAGAC--ACAGAGAAACAGCAAGAGAAGTCACTCTGGAAGGAACACAGGC-------A---GGCGGTGCTGACACCATCCC-AC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181088379 312 + 182113224 TGCGGAAAGCCTGGCGTGTGCGGCTGCGGTCACCAAAGCTCCAGCTCTTGGGCACCTTGCTCGGGCTGTCATCAAGACTCTGATCCGCACTGGGGGACCGCCGGACCGTCTGGGCCTGGGGAGACCCCTTTCCCTTGGCAGCCATGCCTCGGGGGCTGGAGAAGACACGATCTTTCAAACTGACCTTCTGACTGTTCCCAGGATAACG----GACCAGCGGACAGAACGAGCAGACAGACACACAGAAAAACAGCAAGAGAAATCACTCTGGAAATAACAAAGTCACGTTCAC---AAGTCTCTTTGCAGCTGATGCCC i mm10.chr2 C 0 C 0 s canFam3.chr24 47067825 296 + 47698779 TCCGGAAGGCCTGGCGCGCCCGGCTGCGGTCCCCGAAGCTCCAGCTCTTGGGCACCTTGCTCGGGCTGTCCTCCAGACTCTGGTCGGCACTGGGGGAGCGCCGGACGCTCTGGGCCTGCGGGGACCCCTTCCCCTTGGCCGCCACGCCGCGGGGGCTGGAGAAGACACGGTCTTTCAAACTGACCTTCTGGCTGCTTCCACGAGGACC----GA----CAGGCGGG-----CGGACACAC--ACAGAGAGACAGCGAGAGAGGTCACCCTGGCAAGAACGCTCAC-------CCCACCGTCCGCTCGCAGCACACG-CC i canFam3.chr24 C 0 I 1263 e calJac3.chr5 57392856 1263 + 159171411 M a score=415002.000000 s hg38.chr20_KI270871v1_alt 498 64 + 58661 GCCCATGCG-CCGGAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACGGGTGGCTCAGAGCAG s panTro5.chr20 65570104 64 + 66533130 GCCCATGCG-CCGGAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACGGGTGGCTCAGAGCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339727 64 + 62195757 GCCCATGCG-CCGGAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACGGGTGGCTCAGAGCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749727 64 - 1017659 GCCCATGCG-CCGGAGGGAGACATAGGTC--TGAAGAACAGCCAGCCACACGGGTGGCTCAGAGCAG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91959982 64 - 92844088 GCCCACGCG-CTGCAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607529 64 + 96509753 GCCCACGCG-CTGCAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16062981 64 - 16982598 GCCCACGCG-CTGCAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906162 63 - 3785965 GCCCACGCG-CTGCA-GGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578637 64 - 90373283 GCCCACGCG-CTGCAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453452 64 + 6149316 GCCCACGCG-CTGCAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686566 64 - 5823884 GCCCACGCG-CCGCAGGGAGACACAGGTC--TGAAGAACAGCCAGCCACACAGGTGGCTCAGAGCAG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514688 31 + 16356641 G-CCGTGCGACGGGAGGAAGACCCAGGTC--TGA--------------------------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361192 61 + 1231380 GCCCACGCAACGGGAGGAAGACCCAGGTC--TGAGGAGCAGCCA--CACA--GGCGGCTCAGAGCAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923492 62 + 11732439 GCCCACGCGACGGGAGGAAGACCCAGGTC--TGAGGAGCAGCCA--CACA-GGGCGGCTCGGAGCAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140144 49 + 22939663 AGTCAGGTG----GGGGGAGATGCAGGACCATGTAGG--------------GGGCAGCTCAGGGCAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181088691 65 + 182113224 GCCCACAAGCCAGGAAGGATATGCAAGTC--CAGAGAGTAACCAACCACACTGGGGACAGGGAGCAG i mm10.chr2 C 0 I 34 e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=104648.000000 s hg38.chr20_KI270871v1_alt 562 14 + 58661 GTGCCACGGGGACC s panTro5.chr20 65570168 14 + 66533130 GTGCCATGGGGACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339791 14 + 62195757 GTGCCATGGGGACT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749791 14 - 1017659 GTGCCACGGGGACC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960046 14 - 92844088 ATGCCACGGGGACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607593 14 + 96509753 ATGCCACGGGGACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063045 14 - 16982598 ATGCCACGGGGACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906225 14 - 3785965 ATGCCACGGGGACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578701 14 - 90373283 ATGCCACGGGGACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453516 14 + 6149316 ATGCCACGGGGACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686630 14 - 5823884 ATGCCACGGGGACC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514719 5 + 16356641 ---------GGACC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361253 14 + 1231380 GTGCCACGGGGACC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923554 14 + 11732439 ATGCCACGGGGACC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140193 14 + 22939663 CGGCTGAGGGGACC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=61891.000000 s hg38.chr20_KI270871v1_alt 576 12 + 58661 GAGCACCCGGCG s panTro5.chr20 65570182 12 + 66533130 GAGCACCCggcg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339805 12 + 62195757 GAGCACCCGGCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749805 12 - 1017659 GAGCCCCCGGCG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960060 12 - 92844088 CAGCACCgggcg i rheMac8.chr10 C 0 I 3 s macNem1.NW_012014244v1 16063059 12 - 16982598 GAGCACCgggcg i macNem1.NW_012014244v1 C 0 I 3 s cerAty1.NW_012001373v1 2906239 12 - 3785965 GAGCACCGGGCG i cerAty1.NW_012001373v1 C 0 I 3 s chlSab2.chr2 89578715 12 - 90373283 GAGCACCCGGCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453530 12 + 6149316 GAGCACCgggcg i manLeu1.NW_012104365v1 C 0 I 3 s colAng1.NW_012114444v1 4686644 12 - 5823884 GAGCACCCGGCG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514724 12 + 16356641 GGGCACCCAGCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361267 12 + 1231380 GAGCACCCGGGG i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22140207 12 + 22939663 AAGCTCAGGTCG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M e macFas5.chr10 95607607 0 + 96509753 C a score=56840.000000 s hg38.chr20_KI270871v1_alt 588 17 + 58661 GGAGGGAGGGAGGGGAG--- s panTro5.chr20 65570194 17 + 66533130 ggagggagggaggggag--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339817 17 + 62195757 GGAGGGAGGGAGGGGAG--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749817 17 - 1017659 GGAGGGAGGGAGGGGAG--- i gorGor5.CYUI01015750v1 C 0 C 0 s macNem1.NW_012014244v1 16063074 17 - 16982598 ggagggagggaggggag--- i macNem1.NW_012014244v1 I 3 C 0 s cerAty1.NW_012001373v1 2906254 16 - 3785965 GGAGGGAGGG-GGGGAG--- i cerAty1.NW_012001373v1 I 3 C 0 s chlSab2.chr2 89578727 16 - 90373283 -GGAGCAGGGAGGGGAG--- i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4686656 16 - 5823884 -GGAGCAGGGAGGGGAG--- i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514736 17 + 16356641 GGAAGGAGGGAGGGGAG--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361279 17 + 1231380 GGAAGGCGGGAGGGGAG--- i cebCap1.NW_016107870v1 C 0 I 4 s otoGar3.GL873542 22140219 19 + 22939663 -GGGGGCGGGTGAACAGCAG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e calJac3.chr5 57392856 1263 + 159171411 M e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=8159.000000 s hg38.chr20_KI270871v1_alt 605 3 + 58661 GCC s panTro5.chr20 65570211 3 + 66533130 gcc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339834 3 + 62195757 GCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749834 3 - 1017659 GCC i gorGor5.CYUI01015750v1 C 0 C 0 s macNem1.NW_012014244v1 16063091 3 - 16982598 gcc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906270 3 - 3785965 GCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578743 3 - 90373283 GCC i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4686672 3 - 5823884 GCC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514753 3 + 16356641 TCC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22140238 3 + 22939663 ATT i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e calJac3.chr5 57392856 1263 + 159171411 M e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=21939.000000 s hg38.chr20_KI270871v1_alt 608 9 + 58661 ACGGGGACC s panTro5.chr20 65570214 9 + 66533130 acggggacc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339837 9 + 62195757 ACGGGGACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749837 8 - 1017659 AC-GGGACC i gorGor5.CYUI01015750v1 C 0 C 0 s macNem1.NW_012014244v1 16063094 9 - 16982598 acggggacc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906273 9 - 3785965 ACGGGGACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578746 9 - 90373283 ACAGGGACC i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4686675 9 - 5823884 ACGGGGACC i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22140241 9 + 22939663 CCTGGGCCC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=13439.000000 s hg38.chr20_KI270871v1_alt 617 18 + 58661 GAGCACCCGGTGGGAGGG s panTro5.chr20 65570223 18 + 66533130 gagcacccggcgggaggg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339846 18 + 62195757 GAGCACCCGGCGGGAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749845 17 - 1017659 GGGCA-CCGGCGGGAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2906282 18 - 3785965 CAGCACCGGGTGGGAGGA i cerAty1.NW_012001373v1 C 0 I 2 s otoGar3.GL873542 22140250 16 + 22939663 --ACACCAGGTAGGCCAG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=4640.000000 s hg38.chr20_KI270871v1_alt 635 9 + 58661 ---------AGGGAGGGG s panTro5.chr20 65570241 9 + 66533130 ---------agggagggg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339864 9 + 62195757 ---------AGGGAGGGG i panPan2.chr20 C 0 T 68 s gorGor5.CYUI01015750v1 749862 9 - 1017659 ---------AGGGAGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s otoGar3.GL873542 22140266 18 + 22939663 AGCTTGGCTGTGCTGGGG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=6003.000000 s hg38.chr20_KI270871v1_alt 644 12 + 58661 AGGCCACGGGGA s panTro5.chr20 65570250 12 + 66533130 aggCCACGGGGA i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 749871 12 - 1017659 AGGCCACGGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s otoGar3.GL873542 22140284 12 + 22939663 AGGCCATGGTGA i otoGar3.GL873542 C 0 I 135 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I e panPan2.chr20 61339873 68 + 62195757 T a score=900.000000 s hg38.chr20_KI270871v1_alt 656 3 + 58661 CCG s panTro5.chr20 65570262 3 + 66533130 CCG i panTro5.chr20 C 0 I 167 s gorGor5.CYUI01015750v1 749883 3 - 1017659 CCG i gorGor5.CYUI01015750v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I e panPan2.chr20 61339873 68 + 62195757 T a score=1784.000000 s hg38.chr20_KI270871v1_alt 659 39 + 58661 AGCACCCGGCGGGAGGGAGGG-GGGGAGGCTACCGGGGCC----------------------------------------------------------------------------------------- s panTro5.chr20 65570432 40 + 66533130 AGCACCCAGTGGGAGGGAGGGAGGGGAGGCCACAGACACT----------------------------------------------------------------------------------------- i panTro5.chr20 I 167 C 0 s gorGor5.CYUI01015750v1 749886 129 - 1017659 GGCACCCGGCGGGAGGGAGGGAGGGGAGGCCACGGGGACCGGGCACCTGGCCGAGGAGGAGGGGAAGGGGAGGCCACAGGGACGGGACTGAGCACCTGGCCAGAGGGAGGAGGGGAGGCCAGCGGGACC i gorGor5.CYUI01015750v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I e panPan2.chr20 61339873 68 + 62195757 T a score=16290.000000 s hg38.chr20_KI270871v1_alt 698 29 + 58661 GAGCACCCGGCGGGAGGGAGGGAGGGGAG s panTro5.chr20 65570472 29 + 66533130 GAGCACCTGGCGGGAGGGAGGGAGGGGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339805 29 + 62195757 GAGCACCCGGCGGGAGGGAGGGAGGGGAG i panPan2.chr20 T 68 T 41 s gorGor5.CYUI01015750v1 750015 29 - 1017659 AAGCACCCGGCGGGAGGGAGGGAGGGGAG i gorGor5.CYUI01015750v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=42058.000000 s hg38.chr20_KI270871v1_alt 727 80 + 58661 GCCACGGGGACCGAGCACCCGGCGGGAGGGAGGGAGGGGAGGCCACGGGGACCGAGCACCCGGCGGGAGGGAGGGAGGGG s panTro5.chr20 65570501 80 + 66533130 GTCACGGGGACCGAGCACCCGGTGGGAGGGAGGGAGGGGAGGCCACGGGGACCAAGCACCCTGTGGGAGGGAGGGAGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339793 80 + 62195757 GCCATGGGGACTGAGCACCCGGCGGGAGGGAGGGAGGGGAGGCCACGGGGACCGAGCACCCGGCGGGAGGGAGGGAGGGG i panPan2.chr20 T 41 T 41 s gorGor5.CYUI01015750v1 750044 79 - 1017659 GCCATGGGGACCGAGCACCCGGTGGGAGGGAGGGAGGGGAGGCCATGGGGACCGAGCACCCGG-GGGAGGGAGGGAGGGG i gorGor5.CYUI01015750v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=6190.000000 s hg38.chr20_KI270871v1_alt 807 14 + 58661 AGGCCACAGACACT s panTro5.chr20 65570581 14 + 66533130 AGGCCACAGACACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339832 14 + 62195757 AGGCCACGGGGACC i panPan2.chr20 T 41 C 0 s gorGor5.CYUI01015750v1 750123 14 - 1017659 AGGCCACAGACACC i gorGor5.CYUI01015750v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e aotNan1.NW_018500483v1 1923568 0 + 11732439 C e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e colAng1.NW_012114444v1 4686684 0 - 5823884 C e chlSab2.chr2 89578755 0 - 90373283 C e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e macNem1.NW_012014244v1 16063103 0 - 16982598 C e macFas5.chr10 95607607 0 + 96509753 C e rheMac8.chr10 91960072 3 - 92844088 I a score=30402.000000 s hg38.chr20_KI270871v1_alt 821 11 + 58661 GAGCACCCGGC s panTro5.chr20 65570595 11 + 66533130 GAGCACCCGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339846 11 + 62195757 GAGCACCCGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750137 11 - 1017659 GAGCACCCGGC i gorGor5.CYUI01015750v1 C 0 I 314 s macFas5.chr10 95607607 11 + 96509753 GAGCACCgggc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063103 11 - 16982598 cagcaccgggc i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89578755 11 - 90373283 CAGCACCgggc i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4686684 11 - 5823884 CAGCACCGGGC i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1923568 11 + 11732439 GAGCACCCGGC i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e rheMac8.chr10 91960072 3 - 92844088 I a score=2552.000000 s hg38.chr20_KI270871v1_alt 832 1 + 58661 G s panTro5.chr20 65570606 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339857 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750462 1 - 1017659 G i gorGor5.CYUI01015750v1 I 314 C 0 s macFas5.chr10 95607618 1 + 96509753 g i macFas5.chr10 C 0 I 3 s macNem1.NW_012014244v1 16063114 1 - 16982598 g i macNem1.NW_012014244v1 C 0 I 3 s chlSab2.chr2 89578766 1 - 90373283 g i chlSab2.chr2 C 0 I 3 s colAng1.NW_012114444v1 4686695 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1923579 1 + 11732439 A i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e manLeu1.NW_012104365v1 5453542 3 + 6149316 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e cerAty1.NW_012001373v1 2906300 2 - 3785965 I e rheMac8.chr10 91960072 3 - 92844088 I a score=31195.000000 s hg38.chr20_KI270871v1_alt 833 6 + 58661 GGAGGG s panTro5.chr20 65570607 6 + 66533130 GGAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339858 6 + 62195757 GGAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750463 6 - 1017659 GGAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960075 6 - 92844088 ggaggg i rheMac8.chr10 I 3 C 0 s macFas5.chr10 95607622 6 + 96509753 ggaggg i macFas5.chr10 I 3 C 0 s macNem1.NW_012014244v1 16063118 6 - 16982598 ggaggg i macNem1.NW_012014244v1 I 3 C 0 s chlSab2.chr2 89578770 6 - 90373283 ggaggg i chlSab2.chr2 I 3 C 0 s manLeu1.NW_012104365v1 5453545 6 + 6149316 ggaggg i manLeu1.NW_012104365v1 I 3 C 0 s colAng1.NW_012114444v1 4686696 6 - 5823884 GGAGGG i colAng1.NW_012114444v1 C 0 I 2 s aotNan1.NW_018500483v1 1923580 6 + 11732439 GGAAGG i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M e cerAty1.NW_012001373v1 2906300 2 - 3785965 I a score=58212.000000 s hg38.chr20_KI270871v1_alt 839 9 + 58661 AGGGAGGGG s panTro5.chr20 65570613 9 + 66533130 AGGGAGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339864 9 + 62195757 AGGGAGGGG i panPan2.chr20 C 0 I 1 s gorGor5.CYUI01015750v1 750469 9 - 1017659 AGGGAGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960081 9 - 92844088 agggagggg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607628 9 + 96509753 agggagggg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063124 9 - 16982598 agggagggg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906302 9 - 3785965 AGGGAGGGG i cerAty1.NW_012001373v1 I 2 C 0 s chlSab2.chr2 89578776 9 - 90373283 agggagggg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453551 9 + 6149316 agggagggg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686704 9 - 5823884 AGGGAGGGG i colAng1.NW_012114444v1 I 2 C 0 s aotNan1.NW_018500483v1 1923586 9 + 11732439 AGGGAGGGG i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M a score=25608.000000 s hg38.chr20_KI270871v1_alt 848 5 + 58661 AGGCT s panTro5.chr20 65570622 5 + 66533130 AGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339874 5 + 62195757 AGGCC i panPan2.chr20 I 1 C 0 s gorGor5.CYUI01015750v1 750478 5 - 1017659 AGGCC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960090 5 - 92844088 aggct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607637 5 + 96509753 aggct i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063133 5 - 16982598 aggct i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906311 5 - 3785965 AGGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578785 5 - 90373283 aggct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453560 5 + 6149316 aggct i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686713 5 - 5823884 AGGCT i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1923595 5 + 11732439 AGTCC i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e saiBol1.JH378156 15514756 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M a score=55262.000000 s hg38.chr20_KI270871v1_alt 853 10 + 58661 GGGTGGGCAG s panTro5.chr20 65570627 10 + 66533130 GGGTGGGCGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339879 10 + 62195757 GGGTGGGCGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750483 10 - 1017659 GGGTGGGTGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960095 10 - 92844088 gggtgggcgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607642 10 + 96509753 gggtgggcgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063138 10 - 16982598 gggtgggcgg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906316 10 - 3785965 GGGTGGGCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578790 10 - 90373283 gggtgggcgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453565 10 + 6149316 gggtgggcgg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686718 10 - 5823884 GGGTGGGCGG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514756 3 + 16356641 ----GGG--- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1923600 10 + 11732439 GGGAGGGCAG i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140296 135 + 22939663 I e calJac3.chr5 57392856 1263 + 159171411 M a score=59502.000000 s hg38.chr20_KI270871v1_alt 863 11 + 58661 CAAGCTCCCCC s panTro5.chr20 65570637 11 + 66533130 CAAGCTCCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339889 11 + 62195757 CAAGCTCCCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750493 10 - 1017659 CAAGCT-CCCC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960105 11 - 92844088 CAAGCTCCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607652 11 + 96509753 CAAGCTCCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063148 11 - 16982598 CAAGCTCCCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906326 11 - 3785965 CAAGCTCCCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578800 11 - 90373283 CAAGCTCCCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453575 11 + 6149316 CAAGCTCCCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686728 11 - 5823884 CAAGCTCCCCC i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1923610 10 + 11732439 CAAGCTCCCG- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140431 11 + 22939663 caagctgctgg i otoGar3.GL873542 I 135 C 0 e mm10.chr2 181088756 34 + 182113224 I e cebCap1.NW_016107870v1 361296 4 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e saiBol1.JH378156 15514759 0 + 16356641 C e calJac3.chr5 57392856 1263 + 159171411 M a score=44378.000000 s hg38.chr20_KI270871v1_alt 874 5 + 58661 GGCTG s panTro5.chr20 65570648 5 + 66533130 GGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339900 5 + 62195757 GGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750503 5 - 1017659 GGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960116 5 - 92844088 GGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607663 5 + 96509753 GGCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063159 5 - 16982598 GGCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906337 5 - 3785965 GGCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578811 5 - 90373283 GGCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453586 5 + 6149316 GGCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686739 5 - 5823884 GGCTG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514759 3 + 16356641 --CTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361300 5 + 1231380 GGCTG i cebCap1.NW_016107870v1 I 4 C 0 s aotNan1.NW_018500483v1 1923620 5 + 11732439 GGCTG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140442 5 + 22939663 gacta i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181088756 34 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=806819.000000 s hg38.chr20_KI270871v1_alt 879 111 + 58661 GCTCAGGCGTGG---CCAGAGGTTGGCCATGTGGGGAGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCACGAGGTGCCGGAGCCTTCCTCACACTGTCCTGC s panTro5.chr20 65570653 110 + 66533130 GCTCAGGCGTGG---CCAGAGGTTGGCCATGTGGGGGG-GTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACTACGAGGTGCCGGAGCCTTCCTCACACTGTCCTGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61339905 110 + 62195757 GCTCAGGCGTGG---CCAGAGGTTGGCCATGTGGGGGG-GTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACTACGAGGTGCCGGAGCCTTCCTCACACTGTCCTGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750508 110 - 1017659 GCTCAGGCGTGG---CCAGAGGTTGGCCATGTGGGGGG-GTTGATGTCTGTGGACTCTTAAATCACTTTCCACTACCACCACGAGGTGCCGGAGCCTTCCTCACACTGTCCTGC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960121 111 - 92844088 GCCCAGGCGTGG---CCAGAGCTCGGCCGTGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCGTGAGGTGCCAGTGCCTTCTTCACGCTGTCCCGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607668 111 + 96509753 GCCCAGGCATGG---CCAGAGCTCGGCCGTGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCGTGAGGTGCCAGTGCCTTCTTCACGCTGTCCCGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063164 111 - 16982598 GCCCAGGCGTGG---CCAGAGCTCGGCCGTGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCGTGAGGTGCCAGTGCCTTCTTCACGCTGTCCCGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906342 111 - 3785965 GCCCAGGCGTGG---CCAGAGCTCGGCTGTGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCATGAGGTGCCAGTGCCTTCTTCACGCTGTCCCGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578816 111 - 90373283 GCTCAGGCGTGG---CCAGAGCTTGGCCATGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCATGAGGTGCCAGTGCCTTCTTCATGCTGTCCCGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453591 111 + 6149316 GCCCAGGCGTGG---CCAGAGCTCGGCTGTGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCCGCTACCACCATGAGGTGCCAGTGCCTTCTTCACGCTGTCCCGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686744 111 - 5823884 GCTCAGGCGTGG---CCAGAGCTCGGCCATGTCGGGGGAGTTGATGTCTGTGGACTCTTAAATCACTTTCTGCTACCACCATGAGGTGCCAGTGCCTTCTTCATGCTGTCCCGC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514762 95 + 16356641 GCGCCGGCGTGG---CCAGAGCGTGGCC---------------ACGTCTGTGGGCTCCTACGTCCCGCTCGGCCACCACCGC-GGGCGCCGGAGCCCTCCTCGCGCTGCCCCGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361305 110 + 1231380 GCACTGGTGTGG---CCAGAGCTTGGCCATGT-CGGGGAGGCGATGTCTGCGGACTCTTAAATCCCGCTCTGCCACCACCACAAGGCGCCAGAGCCCTCCTCACGCTGTCCCAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923625 111 + 11732439 GCGCTGGCATGG---CCAGAGCTTGGCCGTGTGGGGGGAGGTGACGTCTGCGGACTCTTAAATCCCTCTCTGCCACCACCCCAAGGCGCGGGAGCCCTCCTCACGCTGTCCTGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140447 93 + 22939663 ---caggtgtgaggcaccaagtctggccaG-----------------CTGTGAACTTTCAAGTCACTTCCAGCTACCACTAGCAGTTGCGGGAGTC-TCCTCACAACATCCTGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181088790 96 + 182113224 GCACAGGTGTGG---CCAGAGCT-----------GGGAAGGCAACGGC--AGGACTCCTAAATTA--TCCAGCTATCACCGCAAGGTGCCAGGGCCCTCTTTATGCTGTGCTGT i mm10.chr2 I 34 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=165554.000000 s hg38.chr20_KI270871v1_alt 990 23 + 58661 CAGCCCCTCACCCAGTGACACTC s panTro5.chr20 65570763 23 + 66533130 CAGTCCCTCACCCAGTGACACTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340015 23 + 62195757 CAGTCCCTCACCCAGTGACACTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750618 23 - 1017659 CAGCCCCTCACCCAGTGACACTC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960232 23 - 92844088 CAGCCCCTCACCCAGTGACACGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607779 23 + 96509753 CAGCCCCTCACCCAGTGACACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063275 23 - 16982598 CAGCCCCTCACCCAGTGACACGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906453 23 - 3785965 CAGCCCCTCACCCAGTGACACGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578927 23 - 90373283 CAGCCCCTCACCCAGTGACACGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453702 23 + 6149316 CAGCCCCTCACCCAGTGACACGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686855 23 - 5823884 CAGCCCCTCACCCAGTGACACGC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514857 23 + 16356641 CGGCCCCTCACCCAGCGGCGCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361415 23 + 1231380 TAGCCCCTCACCCAGTGGCACTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923736 23 + 11732439 CAGCCCCTCGCCCAGTGGCACTC i aotNan1.NW_018500483v1 C 0 I 28 s otoGar3.GL873542 22140540 16 + 22939663 A-------CCCCAGGTGGCTGGC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181088886 13 + 182113224 CTGTCTGTTCTCC---------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 83380 23 + 555560 CAGCCCCCTCCCCCGGGCAGCTC i dasNov3.JH567899 N 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=230187.000000 s hg38.chr20_KI270871v1_alt 1013 52 + 58661 AGGGCAACGGGCAT-CCCAAACACC-GGGGCTGTGGCTCTTCCTCGGGCACCTC s panTro5.chr20 65570786 52 + 66533130 AGGGCAACGGGCAT-CCCAAACACC-AGGGCTGCGGCTCTTCCTCGGGCACCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340038 52 + 62195757 AGGGCAACGGGCAT-CCCAAACACC-AGGGCTGCGGCTCTTCCTCGGGCACCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750641 52 - 1017659 AGGGCAACGGGCAT-CCCAAACACC-GGGGCTGCGGCTCTTCCTCGGGCACCTC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960255 52 - 92844088 AGGGCAATGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTCCTTCGGGCACCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607802 52 + 96509753 AGGGCAATGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTCCTTCGGGCACCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063298 52 - 16982598 AGGGCAATGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTCCTTCGGGCACCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906476 52 - 3785965 AGGGCAATGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTCCTTCGGGCACCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89578950 52 - 90373283 AGGGCAATGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTTCTTCGGGCACTTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453725 52 + 6149316 AGGGCAATGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTCCTTCGGGCACCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686878 52 - 5823884 AGGGCAACGGGCGT-CCCAAACACC-AGGGCTGCGGCTCTTCTTCGGGCACCTC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514880 25 + 16356641 ---------------------------GGGCTGC-GCTCTTCC-CAGGCACCCG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361438 25 + 1231380 ---------------------------GGGCTGC-CCTCTTCT-CAGGCGCCTG i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22140556 43 + 22939663 AGAGCAGT---CTC-CCCCAATGCCTGGGACTG-------TCTCTGGATACCTT i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181088899 45 + 182113224 -------TAGACATCCCCAGACACTTGAGACTGGATCTCTTCCCTGG--ACCTT i mm10.chr2 C 0 C 0 s dasNov3.JH567899 83403 40 + 555560 GGGGGGCAGGCCAG-GCCAGAGCAG-GGGGCCGGAGGGCCTC------------ i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1923759 28 + 11732439 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=343394.000000 s hg38.chr20_KI270871v1_alt 1065 47 + 58661 TGTCTGCCCCGGCCCCGCCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- s panTro5.chr20 65570838 47 + 66533130 TGTCTGCCCTGGCCCCGCCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340090 47 + 62195757 TGTCTGCCCTGGCCCCGCCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750693 47 - 1017659 TGTCTGCCCCGGCCCCGCCC-------GTGGTTTGCCCTGTGGCC-TTTTCACA-T---- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960307 47 - 92844088 TGTCTGCCCTGGCCCCACCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607854 48 + 96509753 TGTCTGCCCTGGCCCCACCC-------GTGGTTTCCCCTGTGGCCTTTTTCACA-C---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063350 47 - 16982598 TGTCTGCCCTGGCCCCACCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906528 47 - 3785965 TGTCTGCCCTGGCCCCACCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579002 47 - 90373283 TGTCTGCCCTGGCCCCACCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453777 47 + 6149316 TGTCTGCCCTGGCCCCACCC-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686930 47 - 5823884 TGTCTGCCCTGGCCCCACCT-------GTGGTTTCCCCTGTGGCC-TTTTCACA-C---- i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514905 47 + 16356641 CGTCCGCCTCAGCCTCGCCT-------GTGGTTTCCCCTGTGGAC-TTTCCACA-G---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361463 42 + 1231380 CGTCTGCCT-----TGGCCT-------GTGGTTTCCCCTGTGGCC-TTTTCACA-G---- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923787 45 + 11732439 TGTCTGCCTCGGCCTCGCCT-------GTGG--TCCCCTGTGGCC-TTTTCACA-G---- i aotNan1.NW_018500483v1 I 28 C 0 s otoGar3.GL873542 22140600 46 + 22939663 TATCTGCCCAG--CCTGGGA-------GTATCTTTCCTGCCAGGC-CTTCCACAGC---- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181088944 47 + 182113224 TGTGTGTACCAGTCCAGCTA-------ACAACCTCCCCTGTTGCC-CATTCCTA-C---- i mm10.chr2 C 0 I 737 s dasNov3.JH567899 83443 55 + 555560 CAGCTGCCCCG--CCTGCCTCCCTAAGGTGCATTCTCCCCTGGCA--AGTCATA-CAGCC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=281448.000000 s hg38.chr20_KI270871v1_alt 1112 34 + 58661 CCGTAACTGCTCCCAGGAAGCAGCctccctcctc s panTro5.chr20 65570885 34 + 66533130 CTGTAACTGCTCCCAGGAAGCAGCctccctcctc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340137 34 + 62195757 CTGTAACTGCTCCCAGGAAGCAGCctccctcctc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750740 34 - 1017659 CTGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91960354 34 - 92844088 CCGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607902 34 + 96509753 CCGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063397 34 - 16982598 CCGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906575 34 - 3785965 CCGTAACTGCTCCCAGGAAGCAGCCACCCTCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579049 34 - 90373283 CCGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453824 34 + 6149316 CTGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4686977 34 - 5823884 CCGTAACTGCTCCCAGGAAGCAGCCTCCCTCCTC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514952 34 + 16356641 CCGTAACTGCCCCCACGAAGCAGCCTCCCTCCTT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361505 34 + 1231380 CCGTAACTGCCCCCTGGAAGCAGcctccctcctc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923832 34 + 11732439 CCGTAACTGCCCTCAGGAAGCAGcctccctcctt i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140646 29 + 22939663 CTGTAACTGCTCACAGGAAGT-GCCCCCCT---- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 83498 29 + 555560 CAGGGTCAGCACCGCGG-----TCCTCTCCCGTC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=61175.000000 s hg38.chr20_KI270871v1_alt 1146 7 + 58661 ccctccc--- s panTro5.chr20 65570919 7 + 66533130 ccctccc--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340171 7 + 62195757 ccctccc--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750774 7 - 1017659 CCCTCCC--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109240487 7 - 110113093 CCCTCCC--- i nomLeu3.chr13 N 0 C 0 s rheMac8.chr10 91960388 7 - 92844088 CCCGCCC--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607936 7 + 96509753 CCCGCCC--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063431 7 - 16982598 CCCGCCC--- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906609 7 - 3785965 CCCGCCC--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579083 7 - 90373283 CCCTCCC--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453858 7 + 6149316 CCCGCCC--- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687011 7 - 5823884 CCCTCCC--- i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514986 7 + 16356641 CCCTCCC--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361539 7 + 1231380 ccctccc--- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1923866 7 + 11732439 ccctccc--- i aotNan1.NW_018500483v1 C 0 I 149 s dasNov3.JH567899 83527 10 + 555560 CCCTCCACAC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22140675 0 + 22939663 C e calJac3.chr5 57392856 1263 + 159171411 M a score=166340.000000 s hg38.chr20_KI270871v1_alt 1153 25 + 58661 acggcctgtccctctccttctgccC s panTro5.chr20 65570926 25 + 66533130 atggcctgtccctctccttctgccC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340178 25 + 62195757 atggcctgtccctctccttctgccC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750781 25 - 1017659 ACGGCCTGTCCCTCTCCTTCTGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109240494 25 - 110113093 GCCACCTGTCCCTCTCCTTCTGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960395 25 - 92844088 ACCGCCTGTCCCTCTCCTTCTGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607943 25 + 96509753 ACCGCCTGTCCCTCTCCTTCTGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063438 25 - 16982598 ACCGCCTGTCCCTCTCCTTCTGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906616 25 - 3785965 GCCACCTGTCCCTCTCCTTCTGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579090 21 - 90373283 GCCACCTGTCC----TCTCCTGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453865 25 + 6149316 GCCGCCTGTCCCTCTCCTTCTGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687018 25 - 5823884 GCCACCTGTCCCTCTCCTTCTGCCC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15514993 22 + 16356641 TCCGCCTGTCCCTCTC---CTGCCC i saiBol1.JH378156 C 0 I 6 s cebCap1.NW_016107870v1 361546 25 + 1231380 tccgcctgtccctctcctTCTGCCC i cebCap1.NW_016107870v1 C 0 I 347 s otoGar3.GL873542 22140675 20 + 22939663 -----GGGTCTCCAGCCTCCAGCTC i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 83537 9 + 555560 ----------------ACGCCGCCC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e aotNan1.NW_018500483v1 1923873 149 + 11732439 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=464990.000000 s hg38.chr20_KI270871v1_alt 1178 88 + 58661 CAGAGTCGAG--GGGCCAGGGGACAACAAGGACATTGGGGGCCAAGTCTGCGGTGGACCCTTGTTCAGCCACACTCCGG--CCTTTCCACCC s panTro5.chr20 65570951 88 + 66533130 CAGAGTCGAG--GGGCCAGGGGACAACAAGGACATTGGGGGCCAAGTCTGCGGCGGACCCTTGTTCAGCCACACTCCGG--CCTTTCCACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340203 88 + 62195757 CAGAGTCGAG--GGGCCAGGGGACAACAAGGACATTGGGGGCCAAGTCTGCGGCGGACCCTTGTTCAGCCACACTCCAG--CCTTTCCACCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750806 88 - 1017659 CAGAGTCGAG--GGGCCAGGGGACAACAAGGACATTGGGGGCCAAGTCTGCGGCGGACCCTTGTTCAGCCACACTCTGG--CCTTTCCACCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109240519 84 - 110113093 CAGAGTCGAG--GGGCCGGGGG---ACAAGGACATTGGGGGCCGAGTCTGGGGTGGACCCTT-TTCAGCCACACTCCAG--CCTTTCCACCC i nomLeu3.chr13 C 0 I 708 s rheMac8.chr10 91960420 84 - 92844088 CAGAGTCAAG--GGGCCGGGGGACAGA-AGGACGTTGGGGGCCGAGTCTGCGGCAGACTC---TTCCGCCACACTCCAG--CCTTTCCACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95607968 84 + 96509753 CAGAGTCAAG--GGGCCGGGGGACAGA-AGGACGTTGGGGGCCGAGTCTGCGGCGGACTC---TTCCGCCACACTCCAG--CCTTTCCACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063463 84 - 16982598 CAGAGTCAAG--GGGCCGGGGGACAAA-AGGACGTTGGGGGCCGAGTCTGCGGCGGACTC---TTCCACCACACTCCAG--CCTTTCCACCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906641 84 - 3785965 CAGAGTCAAG--GGGCCGGGGGACAAC-AGGACGTTGGGGGCCGAGTCTGCGGCGGACCC---TTCCGCCACACTCCAG--CCTTTCCACCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579111 84 - 90373283 CAGAGTCAAG--GGGCCAGGGGACAAC-AGGACGTTGGAGGCTGAGTCTGTGGCGGACCC---TTCCGCCACACTCCAG--CCTTTCCACCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453890 84 + 6149316 CAGAGTCAAG--GGGCCGGGGGACAAC-AGGACGTTGGGGGCCGAGTCTGCGGCGGACCC---TTCCGCCACACTCCAG--CCTTTCCACCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687043 82 - 5823884 CAGAGTCAAG--GGGCCGGGGGACAAC-AGGACGTCGGGGGCCGAGTCTGCGGTGGACCC----TCCGCCACACTCCGG--CCTTTCCA-CC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515021 87 + 16356641 AAGGGTCGAG--GGTCTGGGGGACAATCAGGACATGGGGGGCCAAGTCTGCAGCCGACGCTGGTGCAGCCACGCCCAGG--CCTTTCCCAG- i saiBol1.JH378156 I 6 C 0 s otoGar3.GL873542 22140695 66 + 22939663 CAGAGCC---------------------AGG-----GGAGGCTCTGTCCACAGCCCATTCTTGTGCAGCCACATGCTGGGCCTTTCCCACCC i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 83546 75 + 555560 ------CGAGACGGTCCCAGGCACGGCCCACCCACCTGAGCAGGGGTCTACGCTGGGGCT--GCCCGCCCACACCCAGG--CCTT------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e aotNan1.NW_018500483v1 1923873 149 + 11732439 I e cebCap1.NW_016107870v1 361571 347 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=161625.000000 s hg38.chr20_KI270871v1_alt 1266 24 + 58661 ACCCCGGGG-GCCTGCCTGGTGGGA s panTro5.chr20 65571039 24 + 66533130 ACCCCGGGG-GGCTGCCTGGTGGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340291 24 + 62195757 ACCCCGGGG-GGCTGCCTGGTGGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750894 24 - 1017659 ACCCCGGGG-GGCTGCCTGGTGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241311 24 - 110113093 ACCCTGGGG-GGCTGCCTGGTGGGA i nomLeu3.chr13 I 708 C 0 s rheMac8.chr10 91960504 24 - 92844088 AACCCGGGG-GACTGCCTGGTGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608052 24 + 96509753 AACCCGGGG-GACCGCCTGGTGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063547 24 - 16982598 AACCCGGGG-GACTGCCTGGTGGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906725 24 - 3785965 AACCCGGGG-GACTGCCTGGTGGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579195 24 - 90373283 AAGCCGGGG-GACCGCCTGGTGGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453974 24 + 6149316 AACCCGGGG-GACTGCCTGGTGGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687125 24 - 5823884 AACCCGGGA-GGCTGCCTGGTGGGA i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515108 23 + 16356641 -ACGCTGGG-GGCCACCTGGAGGGG i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22140761 25 + 22939663 ACCCTGGGGAGGCTCCCTGGTCAGA i otoGar3.GL873542 C 0 I 1 s dasNov3.JH567899 83621 23 + 555560 -CTGCAGGA-GCCCACGGGGCAGGA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e aotNan1.NW_018500483v1 1923873 149 + 11732439 I e cebCap1.NW_016107870v1 361571 347 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=918205.000000 s hg38.chr20_KI270871v1_alt 1290 129 + 58661 TGGGCTTCAGGAGGGCTCAGGCCTCCCCTGT--------------------C------AGGCTCC-------CCTCCCACCAG-GTCCGT--GTCAGAGAACTGCTCCTTCCGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCTGGGCCT----------------CA s panTro5.chr20 65571063 129 + 66533130 TGGGCTTCAGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTCC-------CCTCCCACCAG-GTCCGT--GTCAGAGAACTGCTCCTTCCGGCTTCTGGAAGGAAGGAATGGGTAACGGGGCTCCTCTGCCAGCTGGGCCT----------------CA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340315 129 + 62195757 TGGGCTTCAGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTCC-------CCTCCCACCAG-GTCCGT--GTCAGAGAACTGCTCCTTCCGGCTTCTGGAAGGAAGGAATGGGTAACGGGGCTCCTCTGCCAGCTGGGCCT----------------CA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 750918 129 - 1017659 TGGGCTTCAGGAGGGCTCAGGCCTCCCCTGT--------------------C------AGGCTCC-------CCTCCCACCAG-GTCCGT--GTCAGAGAACTGCTCCTTCTGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCTGGGCCT----------------CA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241335 143 - 110113093 TGGGCTTCAGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTCC-------CCTCCCACCAG-GTGCGT--GTCAGAGAACTGCTCCTTCCGGCTTCCGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCAGGCCT--CAAGCAACAAGCCCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960528 144 - 92844088 CGGGCTTCGGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTTC-------CCTCCCACCAG-GTGCGTC-GTCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608076 144 + 96509753 CGGGCTTCGGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTTC-------CCTCCCACCAG-GTGCGTC-GTCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063571 144 - 16982598 CGGGCTTCGGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTTC-------CCTCCCACCAG-GTACGTC-GTCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906749 144 - 3785965 CGGGCTTCGGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTTC-------CCTCCCACCAG-GTGCATC-GTCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579219 144 - 90373283 CGGGCTTCGGGAGGGCTCAGGCCTCCCCTGT--------------------T------GGGCTTC-------CCTCCCACCAG-GTGCATC-ATCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5453998 144 + 6149316 CGGGCTTCGGGAGGGCTCAGGCCTCCCCTGT--------------------C------GGGCTTC-------CCTCCCACCAG-GTGCGTC-GTCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACAGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687149 141 - 5823884 CGGGCTTCGGGAGGGCTCAGGCCTCCC--GT--------------------C------GGGC-TC-------CCTCCCAGCAT-GTGCATC-GTCAGAGAACTGCTCCTTCAGGCTTCTGGAAGGAAGGAATGGATAACGGGGCTCCTCCGCCAGCCGGGCCT--CAAGCAACAAGCCTCA i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515131 126 + 16356641 CGGGCTTC-GGGGGGCTCAGGCCTCCCCTGC--------------------A------CAGCACC-------CCTCCCGCC-G-GGGCGTCGGACGGAGAACTGCTCCTTCA-GCTTCTGGAAGGAGGGAATGGATGAC--GGCTCCTCCGCCAGCAGGGCCT--CA-------------- i saiBol1.JH378156 C 0 I 10 s aotNan1.NW_018500483v1 1924022 128 + 11732439 TGGGCTTCAGGAGGGCTCAGGCCTCCCCTGC--------------------A------CAGCACC-------CCTCCCATCGG-GGGCGTCCGACGGAGAACTGCTCCTTCA-TCTTCTGGAAGGAAGGAATGGATGAC--GGCTCCTCCGCCAGCAGGGCCT--CA-------------- i aotNan1.NW_018500483v1 I 149 I 83 s otoGar3.GL873542 22140787 123 + 22939663 GGGGCTTTGGGAGGGCTCAGGCCTCCTCTGTGGCTCAGGCTGTCCTGTCTCT------GGGCTCC-------ACCCCCACCAGAACATGTCCATCCAAGAAGTAAACATCACAGCTTCTGGGAAGATGGAATGGAT--------------------------------------------- i otoGar3.GL873542 I 1 C 0 s dasNov3.JH567899 83644 127 + 555560 ----CGCCCAGAGAACCGAGG--TGCCATGG--------------------CACACAGGGGCAGCGCAGGTGCCCCCAGCCAG----CG---GCCAGAGAGCCGGACGCCGC-ACTCCTGGATGGACGGGGTGAGC----GGGCTGCTGCCACGGC-GGGCCTGTC--------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e cebCap1.NW_016107870v1 361571 347 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=361443.000000 s hg38.chr20_KI270871v1_alt 1419 65 + 58661 CT----------ATCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCCAAAG-CCACAGCGCTGTGGCCCGGCC- s panTro5.chr20 65571192 65 + 66533130 CT----------ATCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCCAAAG-CCACAGCGCTGTGGCCCGGCC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340444 65 + 62195757 CT----------ATCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCCAAAG-CCACAGCGCTGTGGCCCGGCC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751047 67 - 1017659 CT----------ATCCAAGTCCT-GCCCCAGGGCAGGGGGGAGGCAGCCTCCGAAGCCCACAGCGCTGTGGCCCGGCC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241478 64 - 110113093 CT----------ATCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCCGAAG-CCACAGCGCTGTGGCCCGG-C- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960672 64 - 92844088 CT----------GTCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCGGAAG-CTGCAGTGCTGTGGCCCA-CC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608220 64 + 96509753 CT----------GTCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCGGAAG-CTGCAGTGCTGTGGCCCA-CC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063715 64 - 16982598 CT----------GTCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCGGAAG-CTGCAGTGCTGTGGCCCA-CC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906893 64 - 3785965 CT----------GTCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTCGGAAG-CTGCAGTGCTGTGGCCCA-CC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579363 65 - 90373283 CT----------GTCCAAGTCCT-ACCCCAGGGCA-GGCGGAGGCAGCCTTGAAAG-CTGCAGTGCTGTGGCCCAGCC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454142 64 + 6149316 CT----------GTCCAAGTCCT-GCCCCAGGGCA-GGGGGAGGCAGCCTTGGAAG-CTGCAGTGCTGTGGCCCA-CC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687290 65 - 5823884 CT----------GTCCAAGTCCT-GCCCCAGGGCA-GGGAGAGGCAGCCTCGGAAG-CTGCGGTACTGTGGCCCAGCC- i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515267 76 + 16356641 CTTGGGTCGGAGGTCGGAGTCTTGGCCCCAGGGGG-CGGGGAGGCAGCCTCTGAGG-CAGCCGCACGGTGGCCCGGCG- i saiBol1.JH378156 I 10 C 0 s otoGar3.GL873542 22140910 36 + 22939663 ----------------GAGGCTA-GCCCTAGGGTA-GAAGGA-----CCTCGGA---CAACA----------------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 83771 57 + 555560 CC----------CCCTGAGCCCT-GCCCGCGGGCC-GGAGGAGGCAG----------CTGCAGGGAAGAGGGCCGGGCG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e aotNan1.NW_018500483v1 1924150 83 + 11732439 I e cebCap1.NW_016107870v1 361571 347 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=152814.000000 s hg38.chr20_KI270871v1_alt 1484 18 + 58661 CCCTCGGCCTGCGAGGCG s panTro5.chr20 65571257 18 + 66533130 CCCTCGGCCTGCGAGGCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340509 18 + 62195757 CCCTCGGCCTGCGAGGCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751114 18 - 1017659 CCCTCGGCCTGCGAGGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241542 18 - 110113093 CCCTCGGCCTGCGAGGCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960736 18 - 92844088 CCCTCGGCCTGCGAGGCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608284 18 + 96509753 CCCTCGGCCTGCGATTCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063779 18 - 16982598 CCCTCGGCCTGCGAGGCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906957 18 - 3785965 CCCTCGGCCTGCGAGGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579428 18 - 90373283 CCCTCGGCCTGCGAGGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454206 18 + 6149316 CCCTCGGCCTGCGAGGCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687355 18 - 5823884 CCCTCGGCCTGCGAGGCA i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515343 16 + 16356641 --CTCGGCCCTCAAGACG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1924233 18 + 11732439 CCCTCGGCCCTCAAGACG i aotNan1.NW_018500483v1 I 83 C 0 s otoGar3.GL873542 22140946 18 + 22939663 CCCCAGACCTGCATGGTG i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 83828 18 + 555560 CCAGCAGCCCGTGGGGCA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181088991 737 + 182113224 I e cebCap1.NW_016107870v1 361571 347 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=31389.000000 s hg38.chr20_KI270871v1_alt 1502 3 + 58661 TGA s panTro5.chr20 65571275 3 + 66533130 TGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340527 3 + 62195757 TGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751132 3 - 1017659 TGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241560 3 - 110113093 TGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960754 3 - 92844088 TGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608302 3 + 96509753 TGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063797 3 - 16982598 TGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906975 3 - 3785965 TGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579446 3 - 90373283 TGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454224 3 + 6149316 TGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687373 3 - 5823884 TGA i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515359 3 + 16356641 TGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361918 3 + 1231380 TGA i cebCap1.NW_016107870v1 I 347 C 0 s aotNan1.NW_018500483v1 1924251 3 + 11732439 TGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140964 2 + 22939663 -GA i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 83846 3 + 555560 GGA i dasNov3.JH567899 C 0 I 758 e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=227967.000000 s hg38.chr20_KI270871v1_alt 1505 22 + 58661 AGCAGGATTTGCAGCTGTGTCT s panTro5.chr20 65571278 22 + 66533130 AGCAGGATTTGCAGCTGTGTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340530 22 + 62195757 AGCAGGATTTGCAGCTGTGTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751135 22 - 1017659 AGCAGGATTTGCAGCTGTGTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241563 22 - 110113093 AGCAGGATTTGTAGCTGTGTCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960757 22 - 92844088 AGCAGGATTTGCAGCTGTGTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608305 22 + 96509753 AGCAGGATTTGCAGCTGTGTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063800 22 - 16982598 AGCAGGATTTGCAGCTGTGTCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2906978 22 - 3785965 AGCAGGATTTGCAGCTGTGTCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579449 22 - 90373283 AGCAGGATTTGCAGCTGTGTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454227 22 + 6149316 AGCAGGATTTGCAGCTGTGTCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687376 22 - 5823884 AGCAGGATTTGCAGCTGTGTCT i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15515362 22 + 16356641 AGCAGGATTTGTGGCTGTGTCT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361921 22 + 1231380 AGCAGGATTTGTGGCTGTGTCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924254 22 + 11732439 AGCAGGATTTGTGGCTGTGTCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22140966 22 + 22939663 AGCAAGGCTCACAGCTGCGTCC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 83849 758 + 555560 I e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e calJac3.chr5 57392856 1263 + 159171411 M a score=1031964.000000 s hg38.chr20_KI270871v1_alt 1527 112 + 58661 -GGCTGGGTCTCCAGCTCCATACTCTCGGGGGGTCCTTGGGCCTGCCTTGCCCCCGAGTTTTTTGGTGACCGT-GGAGATGGGTTTGCACCCGAGTTCTTCAACTCCAGCGTCC s panTro5.chr20 65571300 112 + 66533130 -GGCTGGGTCTCCAGCTCCATACTCTCAGGGGGTCCTTGGGCCTGCCTTGCCCCCGAGTTTTTTGGTGACCGT-GGAGACGGGTTTGCACCCGAGTTCTTCAACTCCAGCGTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340552 112 + 62195757 -GGCTGGGTCTCCAGCTCCATACTCTCAGGGGGTCCTTGGGCCTGCCTTGCCCCCGAGTTTTTTGGTGACCGT-GGAGACGGGTTTGCACCCGAGTTCTTCAACTCCAGCGTCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751157 113 - 1017659 -GGCTGGGTCTCCAGCTCCATACTCTCGGGGGGTCCTTGGGCCTGCCTTGCCCCCGAGTTTTTTGGTGACCGTGGGAGACGGGTTTGCACCCGAGTTCTTCAACTCCAGCGGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241585 110 - 110113093 -GGCTGGGTCTCCAGCTCCATATTCTCGGGGGGTCCTTGGGCCTGCCTTG--CCCAAGTTTTTTGGTGACCGT-GGAGATGGGTTTGCACCCGAGTTCTTCAACTCCAGCGTCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960779 111 - 92844088 -GGCTGGATCTCCAGCTCCATATTCTCG-GGGGTCCTTGGGCCTGCCTTGCTCCTGAGTTTTTTGGTGACCGT-GGCGACAGGTTTGCACCCAAGTTCTTCAGCTCCAGCGTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608327 111 + 96509753 -GGCTGGATCTCCAGCTCCATATTCTCG-GGGGTCCTTGGGCCTGCCTTGCTCCTGAGTTTTTTGGTGACCGT-GGCGACAGGTTTGCACCCAAGTTCTTCAGCTCCAGCGTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063822 111 - 16982598 -GGCTGGATCTCCAGCTCCATATTCTCG-GGGGTCCTTGGGCCTGCCTTGCTCCTGAGTTTTTTGGTGACCGG-GGCGACAGGTTTGCACCCAAGTTCTTCAGCTCCAGCGTCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907000 111 - 3785965 -GGCTGGATCTCCAGCTCCATATTCTCA-GGGGTCCTTGGGCCTGCCTTGCTCCTGAGTTTTTTGGTGACTGT-GGCGACAGGTTTGCACCCAAGTTCTTCAGCTCCAGCGTCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579471 111 - 90373283 -GGCTGGATCTCCAGCTCCATATTCTCA-AGGGTCCTTGGGCCTGCCTTGCTCCTGAGTTTTTTGGTGACTGT-GGCGACAGGTTTGCACCCAAGTTCTTCGGCTCCAGCATCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454249 111 + 6149316 -GGCTGGATCTCCAGCTCCATATTCTCA-GGGGTCCTTGGGCCTGCCTTGCTCCTGAGTTTTTTGGTGACTGT-GGCGACAGGTTTGCACCCAAGTTCTTCAGCTCCAGCGTCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687398 111 - 5823884 -GGCTGGATCTCCAGCTCCATATTCTCA-GGTGTCCTGGGGCCTGCCTTCCCCCTGAGTTTTTTGGTGACCGT-GGAGACAGGTTTGCACCCAAGTTCTTCAGCTCCAGCGTCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394119 111 + 159171411 -GGCTGGGCCTCCAGCTCCGGATTCTCG-GAGGTCCTTGGGGCTGCCTTGTCCCCGAGTTTCTTGGTGACCAA-GGAGACAGGTCTGCACCTGAGTTCTTCAGCTCCAGCATCC i calJac3.chr5 M 1263 C 0 s saiBol1.JH378156 15515384 111 + 16356641 -GGCTGGGCCTCCAGCTCCGGATTCTCG-GGGGTCCTTGAGGCTGCCTTGTCCCTGAGTTTCTTGGTGACCAA-GGAGACGAGTCTGCACCCGGGTTCTTCAGCTCCAGCGTCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 361943 111 + 1231380 -GGCTGGGCCTCCAGCTCCAGATTCTCG-GGGGTCCTTGGGGTTGCCTTGTCCTCGAGTCTCTTGGTAACCAA-GGAGACAGGTCTGCACCCGAGTTCTTCAGCTCCAGTGTCC i cebCap1.NW_016107870v1 C 0 I 99 s aotNan1.NW_018500483v1 1924276 111 + 11732439 -GGCTGGGCCTCCAGCTCCAGATTCTTG-GGGGTCCTTGGGGCTGCCTCATCCCCGAATTTCTTGGTGACCAA-GGAGATGGGTCTGCACCCAAGTTCTTCAGCTCCAGCGTCC i aotNan1.NW_018500483v1 C 0 I 99 s otoGar3.GL873542 22140988 67 + 22939663 CACCAGGCCACCTATCTCCATATCTGTG-AGGGTCCTCAGGCCTCCTTTGTCCCTATGCCACTAGTTC---------------------------------------------- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 83849 758 + 555560 I e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I a score=250924.000000 s hg38.chr20_KI270871v1_alt 1639 55 + 58661 GCCGGGCGACAGTGA-GGGGAGGGGA---GGGTTCACTGTGGTTGGTGGTTGGGAGACG s panTro5.chr20 65571412 54 + 66533130 GCTGGGCAACAGTG--GGGGAGGGGA---GGGTTCACTGTGGTTGGTGGTTGGGAGACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340664 54 + 62195757 GCTGGGCAACAGTG--GGGGAGGGGA---GGGTTCACTGTGGTTGGTGGTTGGGAGACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751270 56 - 1017659 GCTGGGCGACAGTGAGGGGGAGGGGA---GGGTTCACTGTGGTTGGTGGTTGGGAGGCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241695 55 - 110113093 GCCGGGCGACAGTGA-GGGGAGGGGA---GGGTTCACTGTGGTTGGTGGTTGGGATGCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960890 48 - 92844088 TCCGGGCGACAGTGA-GGGGAGGGGA---GGGGTCACT-------GTGGTTGGGATGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608438 48 + 96509753 TCCGGGCGACAGTGA-GGGGAGGGGA---GGGGTCACT-------GTGGTTGGGATGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063933 48 - 16982598 TCCGGGCGACAGTGA-GGGGAGGGGA---GGGGTCACT-------GTGGTTGGGATGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907111 48 - 3785965 TCCGGGCGACAGTGA-GGGGAGGGGA---GGGGTCACT-------GTGGTTGGGATGCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579582 48 - 90373283 TCCAGGCGACAGTGA-GGGGAGGGGA---GGGGTCACT-------GTGGTTGGGATGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454360 48 + 6149316 TCTGGGCGACAGTGA-GGGGAGGGGA---GGGGTCACC-------GTGGTTGGGATGCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687509 51 - 5823884 TCCGGGCGACAGGGA-GGGGAGGGGAGGGGGGGTCACT-------GTGGTTGGGATGCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394230 44 + 159171411 TCTGGGCAACAGTGA-AGGTAG-------GGGTTCACT-------GCGGCTGGGGTACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515495 43 + 16356641 TCTGGGT-GCCGTGG-GGGTGG-------GGGTTCACT-------GCAGCTGGGGTACC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22141055 25 + 22939663 ------------TAA-GGACAGAGGG-------------------ATGGCAGGTACA-- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 83849 758 + 555560 I e mm10.chr2 181088991 737 + 182113224 I e aotNan1.NW_018500483v1 1924387 99 + 11732439 I e cebCap1.NW_016107870v1 362054 99 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I a score=2149586.000000 s hg38.chr20_KI270871v1_alt 1694 243 + 58661 CCAGGCAGATGTG----GCCT---CCTGAGGTCTGGAAAGCATCAGAACCCCCTGGCTCCCTTGAGGACAGTGGGGCTCTCACGAACTGGGGACCCGCTCATGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGTGGTTCTGGGCAGGGCCCAGAGCACTGTTGCTGGAGCCTGAAACAAGCCTTCGGGTGGGGAGGCCCCGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCTCACG s panTro5.chr20 65571466 243 + 66533130 CCAGGCAGATGTG----GCCT---CCTGAGGTCTGGAAAGCATCAGAACCCCCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCGCTCATGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGTGGCTCTGGGCAGGGCCCAGAGCACCGTTCCTGGAGCCTGAGACAAGCCTTCGGGTGGGGAGGCCCCGCAGATCCCTGACGCCCTTCAGAGAGGAAGCCCAGTGCCTCACG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340718 243 + 62195757 CCAGGCAGATGTG----GCCT---CCTGAGGTCTGGAAAGCATCAGAACCCCCTGGTTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCGCTAATGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGTGGCTCTGGGCAGGGCCCAGAGCACCGTTCCTGGAGCCTGAGACAAGCCTTCAGGTGGGGAGGCCCCGCAGATCCCTGACGCCCTTCAGAGAGGAAGCCCAGTGCCTCACG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751326 242 - 1017659 CCAGGCAGATGTG----GCCT---CCTGAGGTCTGGAAAGCATCAGAACCCCCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCACTCATGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCA-GGTGGTTCTGGGCAGGGCCCAGAGCACCGTTCCTGGAGCCTGAGACAAGCCTTCGGCGGGGGAGGCCCCGCAGATCCCTGATGCACTTCAGAGAGGAAGCCCAGTGCCTCACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241750 246 - 110113093 CCGGGCAGATGTGGCCAGCCT---CCTGGGGTCTGGAAAGCATCAGAACCCCC-GGCTCCCTTGGGGACAGTGGGGCTGTCGTGAACTGGGGACCCGCTCATGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGCGGTTCTGGGCAGGGCCCAGAGTACCGTTCCTGGGGCCTGAGACAAGCCTTCGGGTGGGGAGGCCCTGCAGATCCCTGACGCACTTCAGAGAGGCAGCCCAGTGCCTCAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91960938 243 - 92844088 CCCGGCAGATGCG----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCCTCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCGCTCGTGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGCGGCTCTGGGCAGGGCCCAGAGTACCGTTCCGGGGGCCTGAGACCAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCTCAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608486 243 + 96509753 CCCGGCAGATGCA----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCCTCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCGCTCGTGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGCGGCTCTGGGCAGGGCCCAGAGTACCGTTCCGGGGGCCTGAGACCAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCTCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16063981 243 - 16982598 CCCGGCAGATGCG----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCCTCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCGCTCGTGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGCGGCTCTGGGCAGGGCCCAGAGTACCGTTCCGGGGGCCTGAGACCAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCCCAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907159 243 - 3785965 CCTGGCAGATGCG----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCCTCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACCCGCTCGTGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGCGGTTCTGGGCAGGGCCCAGAGTACCGTTCCAGGGGCCTGAGACGAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCCGACACACTTCAGAGAGGAAGCCCAGTGCCTCACG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579630 243 - 90373283 CCCGGCAGATGCA----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCCCCTGGCTCCCTTGAGGACAGTGGGGCTCTCGTGAACTGGGGACGCGCTCGTGCCCGGCCATGCTTAGCAGCC--ATGGAACTTCTCAGGGCGGTTCTGGGCAGGGCCCAGAGCACCGTTCTGGGGGCCTGAGACGAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCTCACG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454408 243 + 6149316 CCCGGCAGATGTG----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCCTCTGGCTCCCTTGAGGACACTGGGGCTCTCGTGAACTGGGGACCCGCTTGTGCCCAGCCATGCTTAGCAGCC--ACGGAACTTCTCAGGGCGGTTCTGGGCAGGGCCCAGAGTACCGTTCCAGGGGCCTGAGACGAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCTCACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687560 229 - 5823884 CCACGCAGATGTG----GCCT---CCTGAGGTCTGGAAAGCATCAGAGTCC-CTGGCTCCCTTGAGGACAGTGGAGCTCTCGTGAACTGGGGACCCGCTCGTGCCCAGCCATGCTCAGCAGCC--ACGGAACTTCTCAGGGCGGTTCTGGG-------------ACCGTTCCGGGGGCCTGAGACGAGCCCTCGGGTGGGGAGGCCCAGCAGATCCCTGACACACTTCAGAGAGGAAGCCCAGTGCCTCACG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394274 223 + 159171411 CTAGGCAGATGT-----ACCT---CCCGAGGTCTGGGAAGCATCAGAGCCCCC-AGCTCCCTTAAGGACAGTGGGACTCCTGTGAACTGGGGACCCGTCAACGCCCAGCCATGCTTAGCAGCC--ATGGAACTTCTCAGGACGGCTCTGGG-----CCCAGAGCACCGTTCCTGGGGCCTGAGACAAGCCCCTGGGTGGGGAGGCCCAGTGGGTCCCTGATGTACT-------------CTAATACCTCCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515538 223 + 16356641 CCAGGCAGATGT-----GCCT---CCCGAGGTTTGGAAAGCATCAGAGCCCCC-AGCTCCCTTGAGGACAGGGGGACTCCTGTGAACTGGGGACCCATTAACGCCCGGCCATGCTTAGCAGCC--ATGGAACTTCTCAGGACGGCTCTGGG-----CCCAGAGCACCGTTCCTCGGGCCTGAGACAAGCCCCTGGGTGGGGAGGCCCAGTGGGTCCCTGATGCACT-------------CTAATACCTTCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362153 222 + 1231380 CCAGGCAGATGT-----GCCT---CCGGAGGTCTGGGAAGCATCAGAGCCCCC-AGCTCCCTTGAGGACAGTGGGACTCCTGTGAACTGGGGACCTGTTAACGCCC-GCCATGCTCAGCAGCC--AAGGAACTTCTCAGGACGGCTCTGGG-----CCCAGAGCACTGCTCCTGGGGCCTGAGACAAGCCCCTGGGTGGGGAGGCCCAGTTAGTCCCTGACGCACT-------------CTAATACCTCCTG i cebCap1.NW_016107870v1 I 99 C 0 s aotNan1.NW_018500483v1 1924486 223 + 11732439 CCAGGCAGATGT-----GCCT---CCTGCGGTCTGGGAAGCATCAGAGCCCCC-AGCTCCCTTGAGGACAGCGGGACTCCTGTGAACTGGGGACCCGTCAATGCCCAGCCATGCTTAGCAGCC--ATGGAACTTCTCAGGACGGCTCTAGG-----CCCAGAGCGCCGTTCCTGGGGCCTGAGACAAGCCCCTGGGTGTGGAGGCCCAGTGCGTCCCTGATGCACT-------------CTAATACCTCCTG i aotNan1.NW_018500483v1 I 99 C 0 s otoGar3.GL873542 22141080 141 + 22939663 CCAAGCAAGCGTG----GCCTCCCCCTTTGGCCTGGAAGGCATCAGGCTCTACTCACTTCCT---------------------------------------------------CCTACCAGCCTGTCAGAACTTCCCATGG---------------CCATGTATGCTGTCCCTGGGGCCTGTGACAAGCCC---------------------------AACGTAGTCA-----------CCAATGTCTC--- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 83849 758 + 555560 I e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I a score=708298.000000 s hg38.chr20_KI270871v1_alt 1937 83 + 58661 GGCTCCCTGATCCCACGGCGGCTCCCCAGCCAACAGCGAGGGACTGAGGCCCC-GGTCAGCAGCCACCATCAGCCCCGACTCCA s panTro5.chr20 65571709 83 + 66533130 GGCTCCCTGATCCCACGGTGGCTCCCCAGCCAACAGCGAGGGACTGAGGCCCC-GGTCAGCAGCCACCATCAGCCCCCACTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61340961 83 + 62195757 GGCTCCCTGATCCCACGGTGGCTCCCCAGCCAACAGCGAGGGACTGAGGCCCC-GGTCAGCAGCCACCATCAGCTCCCACTCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751568 83 - 1017659 GGCTCCCTGATCCCACGGCGGCTCCCCAGCCAACAGCGAGGGACTGAGGCCCC-GGTCAGCAGCCACCATCAGCCCCCACTCCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109241996 83 - 110113093 GGCTCACCGACCCCACGGCGGCTCCCCAGCCAACAGCGAGGGATGGAGACCCC-GGTCAGCGGCCACCATCAGCCCCCACTCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91961181 83 - 92844088 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGGGACTGAGGTCCC-GGTCAGCAGCCACCATCAGCCCCAACCCCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608729 83 + 96509753 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGGGACTGAGGTCCC-GGTCAGCAGCCACCATCAGCCCCAACCCCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064224 83 - 16982598 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGGGACTGAGGTCCC-GGTCAGCAGCCACCATCAGCCCCAACCCCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907402 83 - 3785965 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGGGACTGAGGTCCC-GGTCAGCAGCCACCATCAGCCCCAACCCCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579873 83 - 90373283 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGGGACTGAGGTCCC-AGTCAGCAGCCACCATCAGCCCCAACCCCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454651 83 + 6149316 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGCGACTGAGGTCCC-GGTCAGCAGCCACCATCAGCCCCAACCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687789 83 - 5823884 GGCTCACTGATCCCACGGCAGCTCCACAGCCAACAGCGAGGGACTGAGGTCCC-GGTCAGCAGCCACCATCAGCCCCAACCCCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394497 74 + 159171411 GGCT--------CCATGGCAGCTCCCCAGCCAACAATGAGGAGCCGAGGCCCC-GGTCAGCAGCCAGCATTGGCCCCCAC-CGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515761 74 + 16356641 GGCT--------CCATGACGGCTCCCCAGCCAACAGTGAGGGGCCGAGGCCCG-GGTGAGAGGCCAGCATCAGCCCCCAC-CGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362375 74 + 1231380 GGCT--------CCATGGCGGCTCCCCAGCCAACAGTGAGGGGCCAAGGCCCG-GGTCAGCAGCCAGCATCGGCCCCCAC-CGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924709 74 + 11732439 GGCT--------CCACGGCGACCCCCCAGCCAACAGTGAGGGGCCAAGGCCCC-AATCAGCAGCCAGCATCGACCCCCAC-CGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141221 27 + 22939663 ---------------------------------------------------------TGACACCCACTGCCGGCCCCTGCCATG i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 84607 84 + 555560 GGCCTCTTGCCCCCACCGTGGCTCCCTGGCCAATAACCAGAGAACAAGTTTCCAGGGCAGTGGCCTCCATCAACCAAGCCCTGG i dasNov3.JH567899 I 758 C 0 e mm10.chr2 181088991 737 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I a score=732773.000000 s hg38.chr20_KI270871v1_alt 2020 76 + 58661 G-ACCCACAGCCAGAG----AGACACGCCCACCAG---ACGGCACAGAGATAACCAGCCACA--GACATGAGA----GCCCACCGCGCCC s panTro5.chr20 65571792 74 + 66533130 G-ACCCACAGCCAGAG----A--CACGCCCACCAG---ACGGCACAGAGATAACCAGCCACA--GACATGAGA----GCCCACCGCGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341044 76 + 62195757 G-ACCCACAGCCAGAG----AGACACGCCCACCAG---ACGGCACAGAGATAACCAGCCACA--GACATGAGA----GCCCACCGCGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751651 76 - 1017659 G-ACCCACAGCCAGAG----AGACACGCCCACCAG---ACGGCACAGAAATAACCAGCCACA--GACAGGAGA----GCCCACCGCGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242079 76 - 110113093 G-ACCCACAGCCAGAG----AGACACGCCCACCAG---ACGGCACAGAGATAACCAGCCACA--GACATGAGA----GCCCACTGCGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91961264 74 - 92844088 G-ACCCACAGCCAGAA----AGACACG-CCACCAG---ACGGCACAGAGATAACCAGCCACA--GACACGAGA-----CCCACCGCGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608812 74 + 96509753 G-ACCCACAGCCAGAA----AGACACG-CCACCAG---ACGGCACAGAGATAACCAGCCACA--GACATGAGA-----CCCACCGCGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064307 74 - 16982598 G-ACCCACAGCCAGAA----AGACACG-CCACCAG---ACGGCACAGAGATAACCAGCCACA--GACACGAGA-----CCCACCGCGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907485 74 - 3785965 G-ACCCACAGCCAGAA----AGACACG-CCACCAG---ACGGCACAGAGATAACCAGCCACA--GACACGAGA-----CCCACCGCGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89579956 75 - 90373283 G-ACCCACAGCCAGAA----AGACACG-CCCCCAG---ACGGCACAGAGACAACCAGCCACA--GACACGAGA----GCCCACCGCGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454734 74 + 6149316 G-ACCCACAGCCAGAA----AGACACG-CCACCAG---ACGGCACAGAGATAACCAGCCACA--GACACGAGA-----CCCACCGCGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687872 76 - 5823884 G-ACCCACAGCCAGAA----CGACACGCCCACCAG---ACGGCACAGAGATAACCAGCCACA--GACACGAGA----GCCCCCCGCGCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394571 75 + 159171411 G-ACCCACAGCCAGAG----AGACACGCCCACCAG---ACGGCATAGAGATAACGTGCTACA---ATGGGAGG----GCCCACCGCGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515835 74 + 16356641 G-ACCCACAGCCAGAG----AGACAGGCCCACCAG---ACGGCACAGAGACAACGTGCTACA---AC-GGAGC----GCCCACCACGCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362449 74 + 1231380 G-ACCCACAGCCAGAG----AGACACGCCCACCAG---ACGGCACAGAGAGAACGCACTACA---AC-GGAGT----GCCCATCGCGCCC i cebCap1.NW_016107870v1 C 0 I 45 s aotNan1.NW_018500483v1 1924783 75 + 11732439 G-ACCCACAGCCAGAG----AGACATGCCCACCAG---ACGGCACAGAGATACCGCGCCACA---ACGCGAGC----GCCCACCGCGCCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141248 61 + 22939663 GTGCCCATGGCCAAAA----AGACATGTCCACCAG---ACGGCACAGAGA------------------AGAGA----GTCAACGGCACGC i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181089728 77 + 182113224 G-GCCACCAGCCAGAG----AGATGTGTTCAGCCGCATACAACACAGAGTTGACTAT--------ACAAGAGAAGATGGCCACAGTGCTA i mm10.chr2 I 737 I 1 s dasNov3.JH567899 84691 77 + 555560 G-ACCCACAGCAAGGGTGGAAGAAGCGTCCATCAG--------ACACAGATGGCTGACCACATGGACAGAGCA----GCCTGCAGCGCCC i dasNov3.JH567899 C 0 I 1 e canFam3.chr24 47068121 1263 + 47698779 I a score=250083.000000 s hg38.chr20_KI270871v1_alt 2096 41 + 58661 GTCTGCCTGGCCTGGACA-CGCGGATCGCTTGGCTGCCCCT-C s panTro5.chr20 65571866 41 + 66533130 GTCTGCCCGGCCTGGACA-CGTGGATCGCTTGGCTGCCCCT-C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341120 41 + 62195757 GTCTGCCCAGCCTGGACA-CGTGGATCGCTTGGCTGCCCCT-C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751727 41 - 1017659 GTCTGCCCGGCCTGGACA-CGCAGATCGCTTGGCTGCCCCT-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242155 41 - 110113093 ATCTGCCTGGCCTGGACA-CGCGGATGGCTTGGCTGCCCTT-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91961338 41 - 92844088 ATCTGCCCGGCCTGGACA-CGCGGGTGGCTTGGCTGCTCCT-C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95608886 41 + 96509753 ATCTGCCCGGCCTGGACA-CGCGGGTGGCTTGGCTGCTCCT-C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064381 41 - 16982598 ATCTGCCCGGCCTGGACA-CGCGGGTGGCTTGGCTGCTCCT-C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907559 41 - 3785965 ATCTGCCCGGCCTGGACA-CGCGGGTGGCTTGGCTGCTCCT-C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89580031 41 - 90373283 ATCTGCCCGACCTGGACA-CGCGGGTGGCTTGGCTGCTCCT-C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454808 41 + 6149316 ATCTGCCCGGCCTGGACA-CGCGGGTGGCTTGGCTGCTCCT-C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4687948 41 - 5823884 ATCTGCCCGGCCTGGACA-CGCGGATGGCGTGGCTGCTCCT-C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394646 37 + 159171411 ATCTGCCAGCCTC---CA-CACTGCCAGCTTGGCTGCCCCT-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515909 36 + 16356641 ATCCACCAGCCTC---CA-CACTGCAGGCTTGGCCG-CCCT-- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1924858 38 + 11732439 GTCCGCCAGCCTC---CA-CACTGCTGGCATGGCTGCCCCTC- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141310 42 + 22939663 GTCCACCCAGCCCAGACAGTGCAGATGGGATGTAGCCCTCT-C i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181089806 40 + 182113224 GTCAACCCACCTTGGAC--TGTGGGTGGGGCTGGTGGTCCT-C i mm10.chr2 I 1 C 0 s dasNov3.JH567899 84769 22 + 555560 GCCCACCCGGCATCGGCG-CTTC-------------------- i dasNov3.JH567899 I 1 C 0 e cebCap1.NW_016107870v1 362523 45 + 1231380 I e canFam3.chr24 47068121 1263 + 47698779 I a score=409299.000000 s hg38.chr20_KI270871v1_alt 2137 53 + 58661 CCCACCCCATCCCCCAGG--------CAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC s panTro5.chr20 65571907 53 + 66533130 CCCACCCCATCCCCCAGG--------CAGCAGGTAACCACCCAGACCATCTGTGCCCACTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341161 53 + 62195757 CCCACCCCATCCCCCAGG--------CAGCAGGTAACCGCCCAGACCATCTGTGCCCACTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751768 53 - 1017659 CCCACCCCATCCCCCAGG--------CAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242196 46 - 110113093 CCCACCCCATCCCCCGGG--------CAGCAGGTGACCGCCCAGACCATCTGCG------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91961379 53 - 92844088 CCCACCCCATCCCCCGGG--------CAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC i rheMac8.chr10 C 0 I 55 s macFas5.chr10 95608927 53 + 96509753 CCCACCCCATCCCCCGGG--------CAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064422 53 - 16982598 CCCACCCCATCCCCCGGG--------CAGCAGGTGACGGCCCAGACCATCTGTGCCCACTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907600 53 - 3785965 CCCACCCCATCCGCCGGG--------CAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC i cerAty1.NW_012001373v1 C 0 I 49 s chlSab2.chr2 89580072 53 - 90373283 CCCACCCCATCCCCCGGG--------CAGCAGGTGACCACCCAGACCATCTGTGCCCACTC i chlSab2.chr2 C 0 I 3 s manLeu1.NW_012104365v1 5454849 53 + 6149316 CCCACCCCATCCCCCGGG--------CAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4687989 61 - 5823884 CCCACCCCATCCCCCAGGCAGCAGGTCAGCAGGTGACCGCCCAGACCATCTGTGCCCACTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394683 33 + 159171411 CCCACCCCATCCCCCAGG--------CAGCAGGCAAC---------------TGCC----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515945 44 + 16356641 CCCACCCCATCCCCCAGG--------CAGCAGGCAACTGCCCAGACCA----TGCC----- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362568 44 + 1231380 CCCACCCCATCCGCCATG--------CAGCAGGCGACTGCCCAGACCA----TGCC----- i cebCap1.NW_016107870v1 I 45 C 0 s aotNan1.NW_018500483v1 1924896 32 + 11732439 -CCACCCCATGCCCCAGG--------CAGCAGGCGAC---------------TGCC----- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141352 43 + 22939663 TCCAGCCCACCCTCCAGG--------CAGCAGGCAAAGGCTGAGGCCATCT---------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181089846 12 + 182113224 CCAAACCCATTT------------------------------------------------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 84791 42 + 555560 CCCAACC--TCCCCCAG---------CAGCAGGCAGCCCCTGGGGCCACACCT-------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I a score=-16023.000000 s hg38.chr20_KI270871v1_alt 2190 3 + 58661 AGC- s panTro5.chr20 65571960 3 + 66533130 AGC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341214 3 + 62195757 AGC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751821 3 - 1017659 AGC- i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95608980 2 + 96509753 GG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064475 2 - 16982598 AG-- i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5454903 2 + 6149316 GG-- i manLeu1.NW_012104365v1 I 1 I 49 s colAng1.NW_012114444v1 4688050 2 - 5823884 GG-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394716 1 + 159171411 --C- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515989 1 + 16356641 --C- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362612 1 + 1231380 --T- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924928 1 + 11732439 --C- i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 84833 3 + 555560 -GCC i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109242242 0 - 110113093 C e mm10.chr2 181089858 0 + 182113224 C e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141395 0 + 22939663 C e chlSab2.chr2 89580125 3 - 90373283 I e cerAty1.NW_012001373v1 2907653 49 - 3785965 I e rheMac8.chr10 91961432 55 - 92844088 I a score=13776.000000 s hg38.chr20_KI270871v1_alt 2193 24 + 58661 AGACCATCTGTCCCCACTCAGGCG s panTro5.chr20 65571963 24 + 66533130 AGACCATCTGTACCCACTCAGGCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341217 24 + 62195757 AGACCATCTGTACCCACTCAGCCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751824 24 - 1017659 AGACCATCTGTACCCACTCAGGCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242242 12 - 110113093 ------------CCCACTCAGGCA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95608982 1 + 96509753 --------------------G--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064477 1 - 16982598 --------------------G--- i macNem1.NW_012014244v1 C 0 C 0 s colAng1.NW_012114444v1 4688052 1 - 5823884 --------------------G--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394717 24 + 159171411 AGACCATCTGTGGCCACTCCAGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15515990 24 + 16356641 AGACCATCTGTGGCCACTCGGAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362613 24 + 1231380 AGACCATCTGTGGCCACTCTGGGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924929 24 + 11732439 AGACCATCTGTGGCCACTCTGGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141395 14 + 22939663 ----------TCACCATTTAGAAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181089858 23 + 182113224 GGACCATCTGTGCCTGCTCAGAC- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 84836 10 + 555560 AGGCCACAGG-------------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5454905 49 + 6149316 I e chlSab2.chr2 89580125 3 - 90373283 I e cerAty1.NW_012001373v1 2907653 49 - 3785965 I e rheMac8.chr10 91961432 55 - 92844088 I a score=53385.000000 s hg38.chr20_KI270871v1_alt 2217 5 + 58661 TCTCT s panTro5.chr20 65571987 5 + 66533130 TCTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341241 5 + 62195757 TCTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751848 5 - 1017659 TCTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242254 5 - 110113093 TCTCT i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95608983 5 + 96509753 TCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064478 5 - 16982598 TCTCT i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89580128 5 - 90373283 TCTCT i chlSab2.chr2 I 3 C 0 s colAng1.NW_012114444v1 4688053 5 - 5823884 TCTCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394741 5 + 159171411 TCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15516014 5 + 16356641 TCTCT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362637 5 + 1231380 TCTCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924953 5 + 11732439 TCTCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141409 5 + 22939663 TGTCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181089881 5 + 182113224 TCTCT i mm10.chr2 C 0 I 1 s dasNov3.JH567899 84846 5 + 555560 TCTCT i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5454905 49 + 6149316 I e cerAty1.NW_012001373v1 2907653 49 - 3785965 I e rheMac8.chr10 91961432 55 - 92844088 I a score=51308.000000 s hg38.chr20_KI270871v1_alt 2222 7 + 58661 ------GAGAGAA s panTro5.chr20 65571992 7 + 66533130 ------GAGAGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341246 7 + 62195757 ------GAGAGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751853 3 - 1017659 ----------GAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242259 7 - 110113093 ------GAGAGAA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95608988 7 + 96509753 ------GAGAGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064483 7 - 16982598 ------GAGAGAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907702 7 - 3785965 ------GAAGCAG i cerAty1.NW_012001373v1 I 49 C 0 s chlSab2.chr2 89580133 7 - 90373283 ------GAGAGAA i chlSab2.chr2 C 0 I 41 s colAng1.NW_012114444v1 4688058 7 - 5823884 ------GAGAGAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394746 7 + 159171411 ------GAGAGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15516019 7 + 16356641 ------GAGAGGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362642 7 + 1231380 ------GAGAGGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924958 7 + 11732439 ------GAGAGGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141414 7 + 22939663 ------GAGAGGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181089887 7 + 182113224 ------AAGAGGA i mm10.chr2 I 1 I 3 s dasNov3.JH567899 84851 13 + 555560 AAAGGAAGGAGAA i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e manLeu1.NW_012104365v1 5454905 49 + 6149316 I e rheMac8.chr10 91961432 55 - 92844088 I a score=248771.000000 s hg38.chr20_KI270871v1_alt 2229 31 + 58661 AGAAAGAAGC-----CCCTGGGTG-----TTGTGCCCGCTC s panTro5.chr20 65571999 31 + 66533130 AGAAAGAAGC-----CCCTGGGTG-----TGGTGCCCGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341253 31 + 62195757 AGAAAGAAGC-----CCCTGGGTG-----TGGTGCCCGCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751856 31 - 1017659 AGAAAGAAGC-----CCCTGGGTG-----TGGTGCCCGCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242266 31 - 110113093 AGAAAGAAGC-----CCCTGGGTG-----TGGTGCCCGCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91961487 31 - 92844088 AGACGGAAGC-----CCCCGCGTG-----TGGTGCCCGCTC i rheMac8.chr10 I 55 C 0 s macFas5.chr10 95608995 30 + 96509753 AGAAAGAAGC-----CCCCG-GTG-----TGGTGCCCGCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064490 30 - 16982598 AGAAAGAAGC-----CCCCG-GTG-----TGGTGCCCGCTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907709 31 - 3785965 AGACGGAAGC-----CCCCGGGTG-----TGATGCCCGCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89580181 31 - 90373283 AGACGGAAGC-----CCCTGGGTG-----TGGTGCCCGCTC i chlSab2.chr2 I 41 C 0 s manLeu1.NW_012104365v1 5454954 31 + 6149316 AGACGGAAGC-----CCCCGGGTG-----TGGTGCCCGCTC i manLeu1.NW_012104365v1 I 49 C 0 s colAng1.NW_012114444v1 4688065 31 - 5823884 AGAAAGAAGC-----CCCCGGGTG-----TGGTGCCCGCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394753 30 + 159171411 AGAAAGAAGC-----CCCTGGATG-----CCATGCCCGC-A i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15516026 30 + 16356641 AGAACGAAGC-----CCCTGGATG-----CCATGCCAGC-A i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362649 30 + 1231380 AGAAAGAAGC-----CCCTGGATG-----CCGTGCCTGC-A i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924965 30 + 11732439 AGAAAGAAGC-----CCCTGGATG-----CCGCGCCCGC-A i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141421 36 + 22939663 AAAGGGGAGC-----CCCCAGAAGCCAGCTAGGGCCCACTC i otoGar3.GL873542 C 0 I 89 s mm10.chr2 181089897 36 + 182113224 AGGAAGAAGAGGAAGCCAGGGACA-----CAAAACCCACAC i mm10.chr2 I 3 C 0 s dasNov3.JH567899 84864 30 + 555560 GGCAAGACAG-----CCCAGGCAG-----CTG-GCCCTCTC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I a score=1449756.000000 s hg38.chr20_KI270871v1_alt 2260 173 + 58661 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCCGAGA-TCCCCCGAGTCCCGAGGCGTC-GCGT-GCTTGGGGACGTC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGTCCTGAGTCCACA----------CCCCTGCACTGCCTGAGGCCAACACACCGTGCCCATGGGGGCCAGG-GGTGCTCAGAGTCC s panTro5.chr20 65572030 173 + 66533130 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCCGAGA-TCCCCCGAGTCCCGAGGCGTC-GCGT-GCTTGGGGACGTC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCACA----------CCCCTGCACTGCCTGAGGCCAACACACCGTGCCCATGGGGGCCAGG-GGTGCTCAGAGTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341284 173 + 62195757 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCCGAGA-TCCCCCGAGTCCCGAGGCGTC-GCGT-GCTTGGGGACGTC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCACA----------CCCCTGCACTGCCTGAGGCCAACACACCGTGCCCATGGGGGCCAGG-GGTGCTCAGAGTCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 751887 172 - 1017659 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCCGAGA-TCCCCCGAGTCCCGAGGCATC-GCGT-GCTTGGGGACGTC--AGGAGCCGATGGCACAGGCTTGCTCAGGACCCCAGCCCTGAGTCCACA----------CCCTTGCACTGCCTGAGGCCAACACACCGTGCCCATGGGGGCCA-G-GGTGCTCAGAGTCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242297 173 - 110113093 A-----------------------------------------GGGAAGCAGAGACGGAGCGGCCGAGA-TCCCCCGAGTCCCGAGGCGTC-GCGT-GCTTGGGGGCATC--AGGAGCCGATGGTACAGGCTCGTTCAGGACCCCAGCCCCGAATCCACA----------GCCCCGCACTGCCTGAGGCCAACACACTGTGCCCATGGGGGCCAGG-GGTGCTCAGAGTCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91961518 166 - 92844088 A-----------------------------------------GGGAAGCAGAGACGGAGTGGCTGAGA-CCC-------CCCGAGGTGGC-GCGT-GCTTGGGGGCATC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCAACACGCTGTGCCCGTAGGGGCCAGG-GGTGCTCAGAGTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609025 207 + 96509753 GGGGAAGCAGAGACGGAAGCCCCCGCATGTGGTGCCCGCTCAGGGAAGCAGAGACGGAGTGGCTGAGA-CCC-------CCCGAGGTGGC-GCGT-GCTTGGGGGCATC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCAACACGCTGTGCCCGTAGGGGCCAGG-GGTGCTCAGAGTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16064520 166 - 16982598 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCTGAGA-CCC-------CCCGAGGTGGC-GCGT-GCTTGGGGGCATC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCAACACGCTGTGCCCGTAGGGGCCAGG-GGTGCTCAGAGTCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2907740 166 - 3785965 A-----------------------------------------GGGAAGCAGAGACGGAGTGGCTGAGA-CCC-------CCCGAGGTGGC-GCGT-GCTTGGGGGCATC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCAACACGCTGTGCCCATAGGGGCCAGG-GGTGCTCAGAGTCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89580212 167 - 90373283 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCCGAGACCCC-------CCCGAGGTGGC-GCGT-GCTTGGGGATATC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCTAGCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCAACACGCTGTGCCCGTAGGGGCCAGG-GGTGCTCAGAGTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5454985 166 + 6149316 A-----------------------------------------GGGAAGCAGAGACGGAGTGGCTGAGA-CCC-------CCCGAGGTGGC-GCGT-GCTTGGGGACATC--AGGAGCCGATGGTACAGGCTCGCTCAGGACCCCATCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCAACACGCTGTGCCCACAGGGGCCAGG-GGTGCTCAGAGTCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4688096 166 - 5823884 G-----------------------------------------GGGAAGCAGAGACGGAGTGGCTGAGA-TCC-------CCCGAGGTGTC-ACAT-GCTTGGGGGCATC--AGGAGCCGATGGTACAGGCTGGCTCAGGACCCCAGCCCTGAGTCCACA----------GCCCTGCACTGCCTGAGGCCCACACGCTGTGCCCGTAGGGACCAGG-GGTGCTCAGAGTCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57394783 168 + 159171411 G-----------------------------------------GGGAAGAAGAGACGGAGAGGCCGAGA-TCCCCCAAGCCCCGAAGTGT----GT-GC-CGGGGGCGTC--CGGAGCTGATGGTACAGGCTCGCTCAGGACCCCAGCCCTGAGTCCAC-----------GCCCTGCACTGACCAGGGCCAACATGCCATGCCCATGGGGGCCAGG-GGTGCCCCGAGTCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15516056 161 + 16356641 G-----------------------------------------GGGAAGCAGAGACAGAGAGACCGAGA-CCCCTC-AGCCTTGAAGTGT----GT-GC-TGGGGGCATC--TGGAGCAGATGGTACTGGCTCGCTCAGGACCCCAGCCCTGAGTCCAC-----------ACCCTGCACTGCCCAGGGCCAACACG------CCATGGGGGCCAGG-GGTGCCCCGAGTCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 362679 166 + 1231380 G-----------------------------------------GGGAAGCAGAGACGGAGAGGCCGAGA-CCCCC--AGCCCTGAAGGGT----GT-GC-TGCGGGCATC--TGGAGTGGATGGTACAGGCTTGCTCAGGACCCCGGCCCTGAGTCCAC-----------GCCCTGCACTGCCCGGGGCCAACACGCCATGCCCATGGGGGCCAGG-GGTGCCCCGAGTCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1924995 168 + 11732439 G-----------------------------------------GGGAAACAGAGACGGAGAGGCCGAGA-TCCCCTGAGCCCGGAAGCAT----GT-GC-CGGGGGCGTC--TGGAGCTGATGGTGCAGGCTGGCTCAGTACCCCGGCCCTGAGTCCAT-----------GCCCTGCACAGCCCGGGGCCAACACGCCATGCCCAGGGGGGCCAGG-GGGGCCCCGAGTCC i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181089933 164 + 182113224 A-----------------------------------------GGGAAATTGAGGC------------A-GCT-------TCAAAAATGTC-CCATGGCCTGGGAGCATC--AAGAGTCAGTGGCATCTGCTAGCTTTGGAAAATAGCCCAGAGTCTAGACTTCAGTGTGCCACTAAAACACCCAAGGTC-ACACAACAGACAGGTGGTAGCCAGG-GACACCCAGAATCC i mm10.chr2 C 0 I 786 s dasNov3.JH567899 84894 124 + 555560 ------------------------------------------------------------------------CTGGCTGCCCGACGCAGCAGCGT-TTCCAGCTGCTCCCACGAGGACAGTGGCTGCTGCTCGCTCAGCACCC--------AGCCCAA-----------GCCC-----GGCCCAGGGCC---------CGTCCGAGAGGAGCAGGTGGTGCCTGAGATTC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141457 89 + 22939663 I a score=820558.000000 s hg38.chr20_KI270871v1_alt 2433 123 + 58661 TGGTGC---------------------------------TGTGGGTG-----CCTCTGTCCCAACGGCCTCTGGTCCCCATCCCAACAACAAAAGCACAGGTGGTCGGGGAGAACCGGACGGGGGCCAGGGGAGCACATGGG----------------------CACAGGCTCAGCGGGACTC s panTro5.chr20 65572203 156 + 66533130 TGGTGCCGTGGGGGCCAGGGGTGCTCAGAGTCCTGGTGCTGTGGGTG-----CCTCTGTCCCAACGGCCTCTGGTCCCCATCCCAACAACAAAAGCACAGGTGGTCGGGGAGAACCGGACGGGGGCCAGGGGAGCACATGGG----------------------CACAGGCTCAGCGGGACTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341457 153 + 62195757 TGGTGCCGTGGGGGCCAGGGGTGCTCAGAGTCCTGGTGCTGTGGGTG-----CCTCTGTCCCAACGGCCTCTGGTCCCCATCC---CAACAAAAGCACAGGTGGTCGGGGAGAACCGGACGGGGGCCAGGGGAGCACATGGG----------------------CACAGGCTCAGCGGGACTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752059 156 - 1017659 TGGTGCCGTGGGGGCCAGGGGTGCTCAGAGTCCTGGTGCTGTGGGGG-----CCTCTGTCCCAACGGCCTCTGGTCCCCATCCCAACAACAAAAGCACAGGTGGTCGGGGAGAACCAGACGGGGGCCAGGGGAGCACATGGG----------------------CACAGGCTCAGCGGGACTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242470 123 - 110113093 TGGTAC---------------------------------AGTGGGGG-----CCTCTGTCCCAACGGCCTCTGGTCCCCGTCCCAACAACAAAAGCACAGGTGGTCGGGGAGAACCAGACGGGGGCCAGGGGAGCACATGGG----------------------CCCAGGCTCAGCGGGACTC i nomLeu3.chr13 C 0 I 6 s rheMac8.chr10 91961684 116 - 92844088 TGGTGC---------------------------------CATGGGGG-----CCTCTGTCCCGACGACCTCTGGTCCCTGTCCCAACAACAAAAGCACAGGTGGCCGGGGAGCACCGGACCGGGGCC-GGGGAGCACCT----------------------------GGGTTCCGTGGGACTC i rheMac8.chr10 C 0 I 4 s macFas5.chr10 95609232 116 + 96509753 TGGTGC---------------------------------CATGGGGG-----CCTCTGTCCCGACGGCCTCTGGTCCCTGTCCCAACAACAAAAGCACAGGTGGCCGGGGAGCACCGGACCGGGGCC-GGGGAGCACCT----------------------------GGGTTCCGTGGGACTC i macFas5.chr10 C 0 I 4 s macNem1.NW_012014244v1 16064686 116 - 16982598 TGGTGC---------------------------------CATGGGGG-----CCTCTGTCCCGACGGCCTCTGGTCCCTGTCCCAACAACAAAAGCACAGGTAGCCGGGGAGCACCGGACCGGGGCC-AGGGAGCACCT----------------------------GGGTTCCGTGGGACTC i macNem1.NW_012014244v1 C 0 I 4 s cerAty1.NW_012001373v1 2907906 122 - 3785965 TGGTGC---------------------------------CATGGGGG-----CCTCTGTCCCGATGGCCTCTGGTCCCTGTCCCAACAACAAAAGCACAGGTGGCCGGGGAGCACCGGACCGGGACC-GGGGAGCACCTGGG----------------------CACGGGTTCCGTGGGACTC i cerAty1.NW_012001373v1 C 0 I 130 s chlSab2.chr2 89580379 123 - 90373283 TGGTGC---------------------------------CATGGGGG-----CCTCTGTCCCGACGGCCTCTGGTCCCTGTCCCAACAACAAAAACACAGGTGGCCGGGGAGAACCGGACCGGGGCTGGGGGAGCACCTGGG----------------------CACGGGCTCCGTGGGACTC i chlSab2.chr2 C 0 I 6 s manLeu1.NW_012104365v1 5455151 144 + 6149316 TGGTGC---------------------------------CATGGGGG-----CCTCTGTCCCGACAGCCTCTGGTCCCTGTCCCAACAACAAAAGCACAGGTGGCCGGGGAGCACCGGACCGGGGCC-GGGGAGCACCTGGGTTCCGTGGGACTCCGGGGAGCACCTGGGTTCCGTGGGACTC i manLeu1.NW_012104365v1 C 0 I 4 s colAng1.NW_012114444v1 4688262 122 - 5823884 TGGTGC---------------------------------CAT-GGGG-----CCTCTGTCCCAACGGCCTCTGGTCCCTGTGCCAACAACAAAAGCACAGGTGGCCGGGGAGAACCGGACCGGGGCTGGGGGAGCACCTGGG----------------------CACGGGCTCCGTGGGACTC i colAng1.NW_012114444v1 C 0 I 6 s calJac3.chr5 57394951 106 + 159171411 TGGTGC---------------------------------CGTGGTGG-----CCTCTG--------------GGTCCCTGACC---CAACGGAAGCACAGGTGGCCGAGGATAACCCGTTGGGGGCCAAGGGAGCACCTGGA----------------------CACGGGCTTCGAGGGACTC i calJac3.chr5 C 0 I 6 s saiBol1.JH378156 15516217 105 + 16356641 TGGTGC---------------------------------CGTGGGGG-----CCTCT---------------GGTCCCTGACT---CAACAGAAGCACAGGTTGCCGAGGAGAACCCGTTGGGGGCCAAGGGAGCACCTCCG----------------------CACAGGCTTGGCGGGACTC i saiBol1.JH378156 C 0 I 6 s cebCap1.NW_016107870v1 362845 105 + 1231380 TGGTGT---------------------------------CGTGGGGG-----CCTCT---------------GGTCCCTGACC---CAACGGAAGCACAGGTGGCCGAGGAGAACCCGTTGGGGGCCAAGGGAGCACCTGGG----------------------CACGGGCTTGGCGGGACTC i cebCap1.NW_016107870v1 C 0 I 6 s aotNan1.NW_018500483v1 1925163 105 + 11732439 TGGTGC---------------------------------CATGGGGG-----TCTCT---------------GGTCCCTGACC---CAACGGAAGCACAGGTGGCCAAGGAGAAGCCGTTGGGGGCCAAGGGAGCACCTGGG----------------------CACGGGCTTGGCGGGACTC i aotNan1.NW_018500483v1 C 0 I 6 s dasNov3.JH567899 85018 78 + 555560 TGAGCC---------------------------------CAGGGCTGCGCCACCACTGTCCAGGTGGCCTC--ACTCCCATCCCA-----------------GGTCTGGCACCCCCCGCTGGGGGCGTGG----------------------------------------------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141457 89 + 22939663 I a score=3556122.000000 s hg38.chr20_KI270871v1_alt 2556 410 + 58661 CTGGAATG---TTCTCTCTTTCTCCACCGCACGAGCCATTTCAAAGGCAAGAATAGGCCCCTCCTGACCCCGCTCAGGCAGGCCTCAGGGCAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCTGCGTTTCCACCCGA---GGCAGGTCCAGTCACC----AGAGAGAGAAGCAGCC---ACCTCCTTTCTCACGG--CAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTCGGCCCAACTGTAGCTTCGGGGCTGCCCTTGGCTGGTCTCTGGGCAGAGCCCGGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATGGGCATCAGATTCCCACCTGCGGCCCCGGAGGGGAACGGGTCAAATACCCAGGCGGCCACACAGAC------------GTGCGGGCCAGGAAGGGTCAGGC--CCCAC s panTro5.chr20 65572359 410 + 66533130 CTGGAATG---TTCTCTCTTTCTCCACTGCACGAGCCATTTCAAAGGCAAGAATAGGCCCCTCCTGGCCCCGCTCAGGCAGGCCTCAGGGCAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCTGCGTTTCCACCCGA---GGCAGGTCCAGTCACC----AGAGAGAGAAGCAGCC---ACCTCCTTTCTCACAG--CAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCTTGGCTGGTCTCTGGGCAGAGCCCGGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATGGGCATCAGATTCCCACCTGCGGCCCCGGAGGGGAACGGGTCAAATACCCAGGCGGCCACACAGAC------------GTGCGGGCCAGGAAGGGTCAGGC--CCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61341610 410 + 62195757 CTGGAATG---TTCTCTCTTTCTCCACTGCACGAGCCATTTCAAAGGCAAGAATAGGCCCCTCCTGGCCCTGCTCAGGCAGGCCTCAGGGCAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCTGCGTTTCCACCCGA---GGCAGGTCCAGTCACC----AGAGAGAGAAGCAGCC---ACCTCCTTTCTCACAG--CAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCTTGGCTGGTCTCTGGGCAGAGCCCGGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATGGGCATCAGATTCCCACCTGCGGCCCCGGAGGGGAACGGGTCAAATACCCAGGCGGCCACACAGAC------------GTGCGGGCCAGGAAGGGTCAGGC--CCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752215 410 - 1017659 CTGGAATG---TTCTCTCTTTCTCCACTGCACGAGCTATTTCAAAGGCAAGAATAGGCCCCTCCTGGCCCCGCTCAGGCAGGCCTCAGGGCAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCTGCGTTTCCACCCGA---GGCAGGTCCAGTCACC----AGAGAGAGAAGCAGCC---ACCTCCTTTCTCACGG--TAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTCGGCCCAACTGCAGCTTCGAGGCTGCCCTTGGCTGGTCTCTGGGCAGAGCCCGGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATGGGCATCAGATTCCCACCTGCAGCCCCGGAGGGGAAGGGGTCAAATACCCAGGCGGCCACACAGAC------------GTGCGGGCCAGGAAGGGTCAGGC--CCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109242599 405 - 110113093 CTGGAACG---T----TCTTTCTCCACTGCACGAGCCATTTCAGAGGCAAGAACAGGCCCCTCCTGGCCCCGCTCAGGCAGGCCTCAGGGCAACTGGGAGTCACTGGAAGACTCAATTCCTCTCTCCGCGTTTCCACCCCA---GGCAGGTCCAGTCACCAAAGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTTGGCCCAACTGCAGCTTCGGGGCTGCCCTTGGCTGGTCTCCGGGCACAGCCCAGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATGGGC-----ATTCCCACCTGCGGCCCCGGAGGTGAATGGGTCAAACACCCAGGCGGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCAC i nomLeu3.chr13 I 6 C 0 s rheMac8.chr10 91961804 408 - 92844088 CTGGAATG---TTTTCTCTTCCTCCACTGCATGAGCCATTCCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCT----CAGGCCTTAGGACAAGTGGGAGTCACTGGAAGACTCAATTC-TCTCTCCACCTCTCCACCCCA---GGCAGGTCCAGTCGCCAAAGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGGCAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCCCTGGGCAGAGCCCAGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATTGGCATCAGATTCCTTCCTGCGGCTTCGGAGACGAACGGGTCAAACACCCAGGCCGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCGT i rheMac8.chr10 I 4 C 0 s macFas5.chr10 95609352 409 + 96509753 CTGGAATG---TTTTCTCTTCCTCCACTGCATGAGCCATTCCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCT----CAGGCCTTAGGACAAGTGGGAGTCACTGGAAGACTCAATTCGTCTCTCCACCTCTCCACCCCA---GGCAGGTCCAGTCGCCAACGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGGCAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCCCTGGGCAGAGCCCAGTGCTGAGGGCTTGCCGTGGGAAAGGCACAGCTTGAGGAATTGGCATCAGATTCCTTCCTGCGGCTTCGGAGACGAACGGGTCAAACACCCAGGCCGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCGT i macFas5.chr10 I 4 C 0 s macNem1.NW_012014244v1 16064806 409 - 16982598 CTGGAATG---TTTTCTCTTCCTCCACTGCATGAGCCATTCCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCT----CAGGCCTTAGGACAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCCACCTCTCCACCCCA---GGCAGGTCCAGTCGCCAAAGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGGCAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCTCTGGGCAGAGCCCAGTGCTGACGGCTTGCCGTGGGAAAGGCACAGCTTGAGGAATTGGCATCAGATTCCTTCCTGCGGCTTCGGAGACGAACGGGTCAAACACCCAGGCAGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCGT i macNem1.NW_012014244v1 I 4 C 0 s cerAty1.NW_012001373v1 2908158 409 - 3785965 CTGGAATG---TTTTGTCTTCCTCCACTACATGAGCCATTCCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCT----CAGGCCTTAGGACAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCCACCTCTCCACCCCA---GGCAGGTCCAGTCACCAAAGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGGCAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCTCTGGGCAGAGCCCAGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATTGGCATCAGATTCCTTCCTGTGGCTTCGGAGACGAACGGGTCAAACACCCAGGCCGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCGT i cerAty1.NW_012001373v1 I 130 C 0 s chlSab2.chr2 89580508 409 - 90373283 CTGGAATG---TTTTCTCTTCCTCCACTGCACGAGCCATTCCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCT----CAGGCCTTAGGACAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCCACCTCTCCACCCCA---GGCAGGTCCAGTCACCAAAGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTCAGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCTCTAGGCAGAGCCCAGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGTCTGAGGAATTGGCATCAGATTCCTTCCTGCGGCTTTGGAGACGAACGGGTCAAACACCCAGACAGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCGT i chlSab2.chr2 I 6 C 0 s manLeu1.NW_012104365v1 5455299 407 + 6149316 CTGGAATG---TTTCCTCTTCCTCCACTGCATGAGCCATTCCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCT----CAGGCCTTAGGACAAGTGGGAGTCACTGGAAGACTCAATTCCTCTCTCCACCTCTCCACCCCA---GGCAGGTTCAGTCGCCAA--AGAGAGAGAAGCAGCC---ATCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGGCAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCTCTGGGCAGAGCCCAGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAATTGGCATCAGATTCCTTCCTGCGGCTTCGGAGACGAACGGGTCAAACACCCAGGCCGCCACACAGAC------------GTGCCGGCCAGGAAGGGTCAGGC--CCCGT i manLeu1.NW_012104365v1 I 4 C 0 s colAng1.NW_012114444v1 4688390 413 - 5823884 CTAGAATG---TTTTCTCTTCCTCCACTGCACGAGCCATTTCAGAGGTAGGAACAGG-CCCTCCTGGCCCCGCTCAGGCAGGCCTTAGGGCAAGTGGGAGTCACCGGAAGACTCAATTCCTCTCTCCACCTCTCCACCCCA---GGCAGGTCCAGTCACCAAAGAGAGAGAGAAGCAGCC---ACCTCCTTTCTCATGG--CAGCTGGCAAAGCACCG-GGT-GGAGGACAGAGCCGGTCGGCCCAACTGCAGCTTCGGGGCTGCCCCTGGCTGGTCTCTGGGCAGAGCCCAGTGCTGAGGGCTTGCAGTGGGAAAGGCACAGCTTGAGGAACTGGCATCAGATTCCTTCCTGTGGCTTCGGGGATGAACGGGTCAAACACCCAGGTCACCACACAGAG------------GTGCCGGCCAGGAAGGGTCGGGC--CCTAT i colAng1.NW_012114444v1 I 6 C 0 s calJac3.chr5 57395063 399 + 159171411 TTGGAATG---TTCTCTCCTCTTCCACTGCACGAGCCATTTCAGAGGTAGGAACGGGCCCCTCCTGGCCCTGCT----CAGGCCTCAGGGCAAGTGGGGGTCACTGGAAGACTCAGTTCCCCTCTCCAGGTCTCCACAC-A---GGCAGGTCCAGTCACCAA--AGAGAGAGAAAAGGCC---ACCTCCCTTCCCATGG--CGGGGGGCGAAGCACTG-GGT-GGAGGGCGGAGCC-ATCGGATCAGCTGCAGCTTCCAGGCTGCCCCTGGCTGGTCTCGGG----AGCCCGGTGATGACGGCTTGCAGTGGGAAAGGCGCACAGTGAGGAATCAGCACCAGATTCCTGCCTGCAGCCTGGGAGGTG-ACGGGTCAAACACCCATGC-GCCACAGAGAC------------GTGC-GGCCAAGAAGGTGCAGCC--CCCGA i calJac3.chr5 I 6 C 0 s saiBol1.JH378156 15516328 381 + 16356641 CTGGAATG---TTCTCTCCTCTTCCACTGCACGAGCCATTTCAGAGGTAGGAACGGGCCCCTCCTGGCCCTGCT----CAGGCCTCAGGGCAAGTGGGGGTCACTGGAAGACTGAGTTCCCCTCTCCAGGTCTCCACAC-A---GCCAGGTCCAGTCATCAA--AGAGAGAGAAGCAGCC---ACCTCCTTTCACACGG--CCGCTGGCGAAGCACCG-GGTGGGGGGGCGCAGCT-GTCGGATCAGCTGCCGCTTCCGGGCTGCCCCCTGCTGGTCTCGGG----AGCCCGGTGATGACGGCTTGCAGTGGGAACGGCGCACGGTGAGGAATCAGCAGCAGATTCCTGCCTGCGGCCTTGGAGGTG-GCTGTTCAGACACCCGTGC-GCCACACAGAC------------GTGC-AGCC--------------------- i saiBol1.JH378156 I 6 C 0 s cebCap1.NW_016107870v1 362956 402 + 1231380 CTGGAATGTTCTTCTCTCCTCCTCCACCGCACGAGCCATTTCAGAGGTAGGAACGGCCCCCTTCTGGCCCTGCT----CAGGCCTCAGGGCAAGTGGGGGTCACTGGAAGACTCAGTTCCGCTCTCCAGGTCTCCACAC-A---GGCAGGTCCAGTCACCAA--AGAGAAAGAAGCGGCC---ACCTCCTTTCCCACGG--CCACTGGAGAAGCACCG-GGT-GGAGGGCGGAGCC-GTCAGGTCAGCTGCAGCTTCCGGGCTGTCCCTGGCTGGTCTCGGG----AGCCCGGTGATGACGGCTTGCAGTGGGGAAGGCGCATGGTGAGGAATCAGCAGCAGATTCCTGCCTGCGGCCTTAGAGGTG-ACGGGTCAGACACCCATGC-GCCACACAGAC------------GTGC-GGCCAAGAAGGCGTAGGC--CCCGC i cebCap1.NW_016107870v1 I 6 C 0 s aotNan1.NW_018500483v1 1925274 402 + 11732439 CTGGAATGTTCTTCTCTGCTCCTCCACTGCATGAGCCATTTCAGAGGTAGGAACAGGCCCCTCCTGGCCCTGCT----CAAGCCTCAGGGCAAGTGGGGATCACTGGAAGACTCAGTTCCCCTCTCCAGGTCTCCACAC-A---GGCAGGTCCAGTCACCAA--AGAGAGAGAAGCGGCC---ACCTCCTTTCCCATGG--CCGCTGGCGAAGCACTG-GGT-GGAGGTCGGGGCT-GTCGGATCAGCTGCAGCTTCTGGGCTGCCCCTGGCTGGTCTAGGG----AGCCCGGTGATGATGGCTTGCCGTGGGAAAGGCGCACAGTGAGGAATCAGCACCAGATTCCTGCCTGTGGCCTTGGAGGTG-ACAGGTCAGACACCCATGC-GCCACACAGAC------------GTGC-GGCCAAGAAGGCGCAGGC--CCCGC i aotNan1.NW_018500483v1 I 6 C 0 s dasNov3.JH567899 85096 297 + 555560 -----------------------CCA--------------------------------CCGTGCTTGCACAGCG--------------------TGGCCGCCAC----AGCCTCAGCTCCTCTCGCCTCCCTCTCCCTCCAACCGGCATATCCAGTAACG----GAAGGGAGATGAAACCCGAGTGGCATTTCTCAAAAATCAGTCGAGAAAACGCCACAGA-GGGTGACGGAGCC-GACGGCTCCAGTCTGGCTCC-------TCCCTGGAGCGTCGC-------ATCGCGGTCT----GGCCAGCCAAGGAGAAAACGCG----------------------TCCACCCTGCCACCCTGACCAGG-----------------GACCGCCGCACAGGCCTTGGATCCCTGCTGCGGGCACGGACAGCATGGGCGGCCC-- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141457 89 + 22939663 I a score=510993.000000 s hg38.chr20_KI270871v1_alt 2966 60 + 58661 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- s panTro5.chr20 65572769 60 + 66533130 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342020 60 + 62195757 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752625 60 - 1017659 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243004 60 - 110113093 -------AGTCCGCAGGGAGTTTCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962212 60 - 92844088 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGT-GTGGATTCCGCAGGCCCC---AGGAGAGAAGA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609761 60 + 96509753 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGT-GTGGATTCCGCAGGCCCC---AGGAGAGAAGA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065215 60 - 16982598 -------AGTCCGCAGGGAGTTGCGGGAAGG-GAGTGGT-GTGGATTCCGCAGGCCCC---AGGAGAGAAGA-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908567 60 - 3785965 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89580917 60 - 90373283 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGAC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5455706 60 + 6149316 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4688803 60 - 5823884 -------AGTCCGCAGGGAGTTGCAGGAAGG-GAGTGGC-GTGGATTCCACAGGCCCC---AGGAGAGAAGA-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57395462 40 + 159171411 -------AG-CTGCCAGGCTCTGCAGCGAAG-GAGTGGC-GTGGATTCCA------------------------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15516709 52 + 16356641 ------------GCCGGGAGCTGCAGC--AG-GAGCAGC-GTGGATTCCAC-GGCTCT---GGGCGAGAGGA-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363358 58 + 1231380 -------AG-CTGCTGGGAGCTGCAATGAAG-GAGCAGC-GTGGTTTCCAC-GGCCCT---GGGCGAGGGGA-- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1925676 58 + 11732439 -------AG-CCGCCGGGAGCTGCAGCGAAG-GAGTGGT-GTGGATTCCAC-GGCCCT---GGGCGAGAGGA-- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141546 64 + 22939663 -------AGTCCATGGGGAGCCACAGGGAGA-GGCTAGAGGTGAAACCCACAGGCCCCCAAAGGAGGGGAGG-- i otoGar3.GL873542 I 89 I 17 s dasNov3.JH567899 85393 70 + 555560 GACCAGCAGCTCCAGAGGAGCTGCAGGGGGGTGGGTGCA-ACGGCTCCCGCAGGCCCC---CGCAAGCAGGGGA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I a score=275035.000000 s hg38.chr20_KI270871v1_alt 3026 44 + 58661 CCCAGCCCC----GACGTCTGCTTCCCATTTTT----CAGGGGGG---ACCCCCC s panTro5.chr20 65572829 44 + 66533130 CCCAGCCCC----GACGTCTGCTTCCTATTTTT----CAGGGAGG---ACCCCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342080 44 + 62195757 CCCAGCCCC----GACGTCTGCTTCCCATTTTT----CAGGGAGG---ACCCCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752685 43 - 1017659 CCCAGCCCC----GACGTCTGCTTCCCATTTTT----CAGGGGGG---ACCCCC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243064 47 - 110113093 CCCAGCCCC----GACATCTGCTTCCCGTTTTT----CAGGGGGACATCCCCCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962272 50 - 92844088 CCCGGCCCCA-GTGACGTCTGCTTCCCATTTTC----CAGTGGGGAACTCCCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609821 50 + 96509753 CCCGGCCCCA-GTGACGTCTGCTTCCCATTTTC----CAGTGGGGAACTCCCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065275 50 - 16982598 CCCGGCCCCA-GTGACGTCTGCTTCCCATTTTC----CAGCGGGGAACTCCCCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908627 50 - 3785965 CCCGGCCCCA-GTGACGTCTGCTTCCCATTTTC----CAGTGGGGAACTCCCCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89580977 50 - 90373283 CCCGGCCCCA-ACGACATCTGCTTCCCATTTTC----CAGTGGGGAACTCCCCCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5455766 50 + 6149316 CCCGGCCCCA-ATGACGTCTGCTTCCCATTTTC----CAGTGGGGACCTCCCCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4688863 50 - 5823884 CCTGGCCCCA-ACGACGTCTGCTTCCCATTTTC----CAGTGGGGAACTCCCCCT i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57395502 40 + 159171411 --CAGCCC-----GACGCCTGCGTCCCATTTTC----CAG-GGGGAATCCCC--- i calJac3.chr5 C 0 I 5 s saiBol1.JH378156 15516761 43 + 16356641 CCCGGCCC-----GACGCATGCGTCCCGTTGTC----CAGTGGGGAACCCCC--- i saiBol1.JH378156 C 0 M 156 s cebCap1.NW_016107870v1 363416 43 + 1231380 CCCGGCCC-----GATGCCTGCATCTTGTTTTC----CAGTGGGGAATCCCC--- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1925734 43 + 11732439 CCTGGCCC-----GACGCCTGCGTCCCGTTTTC----CAGTGGGGAATCGCC--- i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 85463 46 + 555560 -----CCCCACAAGTCCACTGGTTCCCATTTTCCTGGCAGTGGTCACTTCC---- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141610 17 + 22939663 I a score=27328.000000 s hg38.chr20_KI270871v1_alt 3070 10 + 58661 ---GCTGACCACG s panTro5.chr20 65572873 10 + 66533130 ---GCCGACCACG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342124 10 + 62195757 ---GCCGACCACG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752728 10 - 1017659 ---GCCGACCACG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243111 10 - 110113093 ---GCCAGCCACG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962322 10 - 92844088 ---CCCCGACACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609871 10 + 96509753 ---CCCCGACACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065325 10 - 16982598 ---CCCCGACACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908677 10 - 3785965 ---CCCCGACACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89581027 10 - 90373283 ---CCCCACCACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5455816 10 + 6149316 ---CCCCGATACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4688914 10 - 5823884 ---CCCCGCCACC i colAng1.NW_012114444v1 I 1 C 0 s calJac3.chr5 57395547 10 + 159171411 ---CCCTGCCACC i calJac3.chr5 I 5 C 0 s cebCap1.NW_016107870v1 363459 9 + 1231380 ----CCGGCCACC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1925777 9 + 11732439 ----CCGGCCACC i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 85509 8 + 555560 GGGGCCCA----- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141610 17 + 22939663 I e saiBol1.JH378156 15516804 156 + 16356641 M a score=395390.000000 s hg38.chr20_KI270871v1_alt 3080 55 + 58661 ACAAGGAGCCACAGCCCC--G-CC-A-------------GCGGCAGACACA------CCCTGCTGGACCCGATGC-CCA s panTro5.chr20 65572883 55 + 66533130 ACAAGGAGCCACAGCCCC--G-CC-A-------------GCGGCAGACACA------CCCTGCTGGACCCGATGC-CCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342134 55 + 62195757 ACAAGGAGCCACAGCCCC--G-CC-A-------------GCGGCAGACACA------CCCTGCTGGACCCGATGC-CCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752738 55 - 1017659 ACAAGGAGCCACAGCCCC--A-CC-A-------------GCGGCAGATGCA------CCCTGCTGGACCCGATGC-CCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243121 58 - 110113093 ACAAGGAGCCATAGCCCCCTG-CCAA-------------GCGGCGGGCATG------CCCTGCTGGACCCGATGC-CCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962332 54 - 92844088 ACGAGGAGCCGCAGTCCC--A-CA-A-------------GCGGCAGGCATG------CCCTGCTGGACCCGATG--CCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609881 54 + 96509753 ACGAGGAGCCGCAGTCCC--A-CA-A-------------GCGGCAGGCATG------CCCTGCTGGACCCGATG--CCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065335 54 - 16982598 ACGAGGAGCCGCAGTCCC--A-CA-A-------------GCGGCAGGCATG------CCCTGCTGGACCCGATG--CCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908687 54 - 3785965 ACGAGGAGCCGCAGTCCC--A-CA-A-------------GCGGCAGGCATG------CCCTGCTGGACCCGATG--CCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89581037 54 - 90373283 ACGAGGAGCTGCAGTCCC--A-CA-A-------------GCGGCAGGCATG------CCCTGCTGGACCCAATG--TCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5455826 54 + 6149316 ACGAGGAGCCGCAGTCCC--A-CA-A-------------GCGGCAGGCATG------CCCTGCTGGACCCGATG--CCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4688924 55 - 5823884 ACGAGGAGCCGTAGTCCC--ACCA-A-------------GCAGCAGGCATG------CCCTGCTGGACCCGATG--CCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57395557 56 + 159171411 ACGAGCAGCCACAGCCCC--ACCA-A-------------GAGGCGGGGACG------CCCTGCCAGACCCCATGC-CCA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 363468 56 + 1231380 ACGAGCAGCCACAGCCCC--GCCG-A-------------GCGGCAGGGACG------CCCTGCCAGACCCCATGC-CCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1925786 56 + 11732439 ATGAGCAGCCACAGCCCC--GCCA-A-------------GCGGCGGGGAGG------CCCTGCCGGACCCCATGC-CCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141627 55 + 22939663 GCATGAAGCAACAGCCTC----CA-G-------------CCTGGTGGGACC------CTCTGCTAGACATGACCCTCCA i otoGar3.GL873542 I 17 I 4 s dasNov3.JH567899 85517 72 + 555560 --GAGCAGCCACAACGCT--G-CC-AGGCCAGGGAGAGGGTGGCAGGAGAGGGGAGCCTCAGGTGGACCCTGCCC-CCA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e saiBol1.JH378156 15516804 156 + 16356641 M a score=438440.000000 s hg38.chr20_KI270871v1_alt 3135 50 + 58661 GCACAGCCCCAGGGGCCGCC--GGG--ACGCAGCCCACGTGTACTGCCCCA------------------------GAC s panTro5.chr20 65572938 50 + 66533130 GCACAGCCCCAGGGGCCGCC--GGG--ACGCAGCCCATGTGCACTGCCCCA------------------------GAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342189 50 + 62195757 GCACAGCCCCAGGGGCCGCC--GGG--ACGCAGCCCATGTGCACTGCCCCA------------------------GAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752793 50 - 1017659 GCACAGCCCCAGGGGCCACC--GGG--ACGCAGCCCACGTGCACTGCCCCA------------------------GAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243179 50 - 110113093 GCACAGCCCCAGGGGCCGCC--GGG--ACGCAGCCCACGTGCACTGCCCCA------------------------GAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962386 51 - 92844088 GCACAGTCCCAAGGGCCACC--GGG--ACGCAGCCCACGTGCACTGCCCCA-----------------------AGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609935 51 + 96509753 GCACAGTCCCAAGGGCCACC--GGG--ACGCAGCCCACGTGCACTGCCCCA-----------------------AGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065389 51 - 16982598 GCACAGTCCCAAGGGCCACC--GGG--ACGCAGCCCACGTGCATTGCCCCA-----------------------AGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908741 51 - 3785965 GCACAGTCCCAAGGGCCACC--GGG--ACGCAGCCCACGTGCACTGCCCCA-----------------------AGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89581091 51 - 90373283 GCACAGTCCCAAGGGCCACC--AGG--ACGCAGCCCACGTGCACTGCCCCA-----------------------GGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5455880 51 + 6149316 GCACAGTCCCAAGGGCCACC--GGG--ACGCAGCCCACGTGCACTGCCCCA-----------------------AGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4688979 51 - 5823884 GCACAGCCCCAAGGGCCGCC--GGG--ACGCAGCCCACGTGCACTACCCCA-----------------------AGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57395613 70 + 159171411 GCACAGCCCC-GGGGTCTCC--GGG--ACGAAGCCCGTGTGCACTGCCCCAGCCAACACAGCGGAGCCAAAGGAA--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15516960 73 + 16356641 GCGCAGCCCC-GGGGCCTCC--GGG--ACGCAGCCAGCGTGCACCGCCCCAGCCACCACGGCGGAGCCACAGGAAGAC i saiBol1.JH378156 M 156 C 0 s cebCap1.NW_016107870v1 363524 72 + 1231380 GCGCAGCACC-GGGG-CTCC--GGG--ACGCAGCCCTCATGCACTGCCCCAGCCAACACGGGGGAGCCGCAGGAAGAT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1925842 73 + 11732439 GCGCAGCCCC-GGGGCCTCC--GGG--ACGCAGCCCGCGTGCACTGCCCCAGCCAACACGGCGGAGCCGCAGGAAGAT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141686 52 + 22939663 ACACAGAGCCAGGGGCCCCC--AGGAAATGCAGCCCCCATGTGTTTCCCAG------------------------GAC i otoGar3.GL873542 I 4 I 45 s dasNov3.JH567899 85589 67 + 555560 --GCAGCC---GGGTCCCCCCTGCA--CCTCGGCCCTCGTGCACTGGCCCA----AGGTGGGCGAGGAGTTCACAGAC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I a score=1260836.000000 s hg38.chr20_KI270871v1_alt 3185 136 + 58661 AGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCGG-CGCGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGCGAGGGAGGCTCTGCCAGG----------AAGAGGAGGGTGGCGCGACCTGGACATGTCCTTC s panTro5.chr20 65572988 136 + 66533130 AGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCGG-CTCGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGCGAGGGAGGCTCTGCCAGG----------AAGAGGAGGGTGGTGCGGCCTGGACATGTCCTTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342239 136 + 62195757 AGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCGG-CTCGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGCGAGGGAGGCTCTGCCAGG----------AAGAGGAGGGTGGTGCGGCCTGGACATGTCCTTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752843 136 - 1017659 AGAGCTGGCGGGAAGGAGCCTGCCCTG-GCCTCGG-CGCGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGCGAGGGAGGCTCTGCCAGG----------AAGAGGAGGGTGGTGGGGCCTGGACATGTCCTTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243229 135 - 110113093 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTTGG-TGC-GC--------CCTGCTGTCCCGGGTCTCGGGCTCTGCTCCCACCTCAGATCTGCGAGGGAGGCTCTGCCAGG----------GAGAGGAGGGTGGTGGGGCCTGGACATGTCCTTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962437 136 - 92844088 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCCG-CACGGC--------CCTGCCGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAGAGGAGGCTGGTGGGGCCTGGACGTGTCTTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95609986 136 + 96509753 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCCG-CACGGC--------CCTGCCGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAGAGGAGGCTGGTGGGGCCTGGACGTGTCTTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065440 136 - 16982598 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCCG-CACGGC--------CCTGCCGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAGAGGAGGCTGGTGGGGCCTGGACGTGTCTTTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908792 136 - 3785965 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCCC-CACGGC--------CCTGCCGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAAAGGAGGCTGGTGGGGCCTGGACATGTCTTTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89581142 136 - 90373283 GGAGCTGGCGGGAAGGAGCCTGCCCTG-GCCTCCG-CACGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAGAGGAGGCTGGTGGGGCCTGGACATGTCTTTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5455931 136 + 6149316 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCCG-CACGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCGCTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAGAGGAGGCTGGTGGGGCCTGGACATGTCTTTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4689030 136 - 5823884 GGAGCCGGCGGGAAGGAGCCTGCCCTG-GCCTCAG-CATGGC--------CCTGCTGTCCCGGGTCTCGGGCTCCACTCCCACCTCAGATCTGTGAGGGAGGCTCTGCCAGG----------GAGAGGAGGGTGGTGGGGCCTGGCCATGTCTTTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57395683 107 + 159171411 ----------------------------GCCTCAG-CAGGGC--------CCTGCGGT-CCGGCCTGGGGACTTCCCTCAC-CATCAGATCTGCAAGGGAGGCTCTGCCGGG----------GAGAAGCAGGTGGTGGGGCCTGGACCCGTCCTTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517033 136 + 16356641 GGAGCCGGCAGGAAGGAGCCCGCCCCG-GCCTCAG-CAGGGC--------CCTGCCGTCCCGGCCCTGGGGCTTCCCTCCCACCTCAGATCTGCAAGGGAGGCTCTGCCGGG----------GAGAAGCAGGTGGCGGGGCCTGGACGCGTCCTTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363596 136 + 1231380 GGAGCTGGAGGGAAGGAGCCCGCCCCG-GCCTCAG-CAGGGC--------CCCACCGTCCCGGCCCTGGGGCTTCCCTCCCACCTCAGATCTGCAAGGGAGGCTCTGCCGGG----------GAGAAGCAGGTGGTGGGGTCTGGACGCGTCCTTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1925915 136 + 11732439 GGAGCTGACGGGAAGGAGCCCGCCCCG-GCCTCAG-CAGTGC--------CCTGCTGTCCCGGCCCTGGGGCTTCCCTCCCACCTCAGATCTGCAAGGGAGGCTCTGCCCAG----------GAGAAGCAGGTGGTGGGGCCTGGACGCGTCCTTC i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 85656 136 + 555560 GAAGCCCCCAG---GGAGCCTGCTCTGAGCCTCAGCCACAGCTGCACATGCCCCCCCCCCCAGCTCTCCCACTGCCCTTTT-CCTCAGACTGGCGGGGGGG--TCTGCCAGATGTGTAGGTCGGCAGGAGGG-GGTGCAGTCT------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I e otoGar3.GL873542 22141738 45 + 22939663 I a score=722164.000000 s hg38.chr20_KI270871v1_alt 3321 66 + 58661 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG s panTro5.chr20 65573124 66 + 66533130 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342375 66 + 62195757 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 752979 66 - 1017659 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243364 66 - 110113093 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962573 66 - 92844088 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGTG-----AGGCTCCATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95610122 66 + 96509753 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGTG-----AGGCTCCATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065576 66 - 16982598 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGTG-----AGGCTCCATG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908928 66 - 3785965 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGTG-----AGGCTCCATG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89581278 66 - 90373283 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGTG-----AGGCTCCATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5456067 66 + 6149316 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGTG-----AGGCTCCATG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4689166 66 - 5823884 CCTCCCCTGGAC---CTCCACCATGACCCA---------AACTCTGCACCCTCCAAGCACAGCCGGCG-----AGGCTCCATG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57395790 65 + 159171411 CCT-CCCTGGAC---CTCCACCAGGACCCA---------GACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517169 65 + 16356641 CCT-CCCTGGAC---CTCCACCAGGACCCG---------GGCCCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363732 65 + 1231380 CCT-CCCTGGAC---CTCCACCAGGACCCG---------AACTCTGCACCCTCCAAGCACAGCTGGTG-----AGGCTCCATG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1926051 65 + 11732439 CCT-CCCTGGAC---CTCCACCAGGACCCT---------GACTTTGCGCCTTCCAAGCACAGCTGGTG-----AGGCTCCATG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141783 54 + 22939663 CCTCGCCTGGAC---CTCCACAGTCGTGGA---------CACTCCCCACTCTCCGAGCACA-CTGGC---------------- i otoGar3.GL873542 I 45 C 0 s dasNov3.JH567899 85792 82 + 555560 GCTCCCTCGGACACTCCTCTCCCTGAACCTCTGGTCAGCGACTCTGC-CCCTCTCAGCAGAGCCTGGGCCCTCGGTCCCCACG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47068121 1263 + 47698779 I a score=282696.000000 s hg38.chr20_KI270871v1_alt 3387 34 + 58661 ----------CTGCAGACACCC--GACCCCG------CCAGCCTGCCTCAGC s panTro5.chr20 65573190 34 + 66533130 ----------CTGCAGACACCC--GACCCCG------CCAGCCTGCCTCAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342441 34 + 62195757 ----------CTGCAGACACCC--GACCCCG------CCAGCCTGCCTCAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753045 34 - 1017659 ----------CTGCAGACACCC--GACCCCG------CCAGCCTGCCTCGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243430 34 - 110113093 ----------CTGCAGACACCC--GACCCCG------CCAGCCTGCCTCAGC i nomLeu3.chr13 C 0 M 279 s rheMac8.chr10 91962639 30 - 92844088 ----------CTGCAGCCACCC--GACCCCG------CCAGCCTG----AGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95610188 30 + 96509753 ----------CTGCAGCCACCC--GACCCCG------CCAGCCTG----AGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16065642 30 - 16982598 ----------CTGCAGCCACCC--GACCCCG------CCAGCCTG----AGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2908994 33 - 3785965 ----------CTGCAGACACCC--GACCCCG------CCAGCCTG-CTCAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89581344 33 - 90373283 ----------CTGCAGACACCC--GACCCCA------CCAGCCTG-CTCAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5456133 33 + 6149316 ----------CTGCAGACACCC--GACCCCG------CCAGCCTG-CTCAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4689232 33 - 5823884 ----------CTGCAGACACCA--GACCCCG------CGAGCCTG-CTCAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57395855 34 + 159171411 ----------CCACGGACACCC--GACCCCA------GCAGCCCGCCTCGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517234 34 + 16356641 ----------CCGCGGACACCC--GACCCCG------CCAGCCCGCCTCGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363797 34 + 1231380 ----------CCGCGGACACCC--GACCCCG------TCAGCCCGCTTCGGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1926116 34 + 11732439 ----------CCGCGGACACCC--GACCCTG------CCAGCCCACCTCGGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141837 21 + 22939663 ----------------ACACAC--CACCCAG------CC-------CTCAGC i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47069384 39 + 47698779 ----------CCGCAGCCGCTC--AGCCCCGGCCGCCCCGACCTG-CCCCGC i canFam3.chr24 I 1263 I 7 s dasNov3.JH567899 85874 36 + 555560 CCAATCCCACCCCCGGCCTTCCCAGACCCCG------GTAAC---------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I a score=216248.000000 s hg38.chr20_KI270871v1_alt 3421 27 + 58661 TGCCAGGAGCA-------CGCGTGGTCTCGCAGG---- s panTro5.chr20 65573224 27 + 66533130 GGCCAGGAGCA-------CGCGTGGTCTCGCAGG---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342475 27 + 62195757 GGCCAGGAGCA-------CGCGTGGTCTCGCAGG---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753079 27 - 1017659 GGCCAGGAGCA-------CGCGTGGTCTCGCAGG---- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91962669 27 - 92844088 TGCCAGGAGCG-------CACATGGCCTCACGGG---- i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95610218 27 + 96509753 TGCCAGGAGCG-------CACATGGCCTCATGGG---- i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16065672 27 - 16982598 TGCCAGGAGCG-------CACATGGCCTCACGGG---- i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2909027 27 - 3785965 TGCCAGGAGCG-------CACATGGCCTCACGGG---- i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89581377 27 - 90373283 TGCCAGGAGCA-------CACATGGTCTCACGGG---- i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5456166 27 + 6149316 TGCCAGGAGCG-------CACATGGCCTCACGGG---- i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4689265 27 - 5823884 TGCCAGGAGCA-------CACATGGTCTCACAGG---- i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57395889 27 + 159171411 TGCCAGGAGCG-------CACGTGGTCTTACAGG---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517268 27 + 16356641 CGCCAGGAGCG-------CGCGTGGTCTCACAGG---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363831 27 + 1231380 CGCCAGGAGCG-------CGTGTGGTCTCACAGG---- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1926150 27 + 11732439 CGCCAGGAGCG-------CGTGTGGTCTCACAGG---- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141858 33 + 22939663 -ACTAGGGCTGACCTCAATGCAGAGTCTGTCAGA---- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47069430 27 + 47698779 TGCCCGGGCAG-------CTCCCGCCCCCGCGGG---- i canFam3.chr24 I 7 I 13 s dasNov3.JH567899 85910 30 + 555560 TGCAACGGCCA-------GGGATGGTGTC-CAGGTAGA i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109243464 279 - 110113093 M e mm10.chr2 181090097 786 + 182113224 I a score=-5396.000000 s hg38.chr20_KI270871v1_alt 3448 1 + 58661 C s panTro5.chr20 65573251 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342502 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753106 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243743 1 - 110113093 C i nomLeu3.chr13 M 279 C 0 s rheMac8.chr10 91962697 1 - 92844088 G i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95610246 1 + 96509753 G i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16065700 1 - 16982598 G i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2909055 1 - 3785965 A i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89581405 1 - 90373283 A i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5456194 1 + 6149316 A i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4689293 1 - 5823884 A i colAng1.NW_012114444v1 I 1 C 0 s calJac3.chr5 57395916 1 + 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517295 1 + 16356641 C i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363858 1 + 1231380 C i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1926177 1 + 11732439 C i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141891 1 + 22939663 T i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 85940 1 + 555560 A i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181090097 786 + 182113224 I e canFam3.chr24 47069457 13 + 47698779 I a score=5348674.000000 s hg38.chr20_KI270871v1_alt 3449 628 + 58661 CCTCCCTCGGC-CACAAGCCAAGAAC------AAGCGCACGC------GAA-----AA---------------GCTGCC--------GCCACCCACCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGTGTGCGAGGGGCG--TCCGTGGCACCTACGCTT-GGGGCTTACGGGGCCGGG---GCAGGCTCAAGAAGCACCT-------GAGA-----GCGCGCCA--TCCCCA----CCCGGCCTGCCA----------------------C-CCTCCCTCCCAATGGTG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCCGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGACCC--CTGCCCAGCT---GGTG----------------TCCGGACCAACGACGCCCAGGAAGCGT--G---AGGATGAAGGGGCCTCCCGT-GGGGGCTGCTCGCAGCAGGACAGGGCCTGCCCTGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTTCAAACCCCTCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCCTGCGGCCAGAAGCACCCTGAATA-------------GATGCTCCGGACACGCAGGACAGC---T--GCTAGCGCCCCAGCAGGCCATGCC-CC-AGGCAGCCCACACGCCCGTCTCCCTCTCTGGAGCTGCCAACAGTCTCCCCGCAAGCACCAACGCCCCCAGAAGCACACAAGC-----AGCAAAGTCACAGGGAGAGG--GTGGC s panTro5.chr20 65573252 608 + 66533130 CCTCCCTCGGC-CACAAGCCAAGAAC------AAGCGCACGC------GAG-----AA---------------GCTGCC--------GCCACCCACCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGTGTGCAAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCCGGG---GCAGGCTCAAGAAGCACCT-------GAGA-----GAGCGCCA--CCCCCA----CCCGGCCTGCCA----------------------C-CCTCCCTCCCAATGGTG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCCGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGACCC--CTGCCCAGCT---GGTG----------------TCTGGACCAACGACGCCCAGGAAGCGT--G---AGGATGAAGGGGCCTCCCGT-GGGG---------------------CCTGCCCTGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTTCAACCCCCTCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCCTGCGGCCAGAAGCACCCTGAATA-------------GATGCTCCGGACACGCAGGACAGC--CT--GCTAGCGCCTCAGCAGGCCGTGCC-CC-GGGCAGCCCACACGCCCGTCTCCCTCTCTGGAGCTGCCAACAGTCTCCCCGCAAGCACCCATCCCCCCAGAAGCACACAAGC-----AGCAAAGTCACAGGGAGAGG--GTGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61342503 608 + 62195757 CCTCCCTCGGC-CACAAGCCAAGAAC------AAGCGCACGC------GAG-----AA---------------GCTGCC--------GCCACCCACCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGTGTGCAAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCCGGG---GCAGGCTCAAGAAGCACCT-------GAGA-----GAGCGCCA--CCCCCA----CCCGGCCTGCCA----------------------C-CCTCCCTCCCAATGGTG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCCGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGACCC--CTGCCCAGCT---GGTG----------------TCTGGACCAACGACGCCCAGGAAGCGT--G---AGGATGAAGGGGCCTCCCGT-GGGG---------------------CCTGCCCTGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTTCAACCCCCTCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCCTGCGGCCAGAAGCACCCTGAATA-------------GATGCTCCGGACACGCAGGACAGC--CT--GCTAGCGCCTCAGCAGGCCGTGCC-CC-AGGCAGCCCACACGCCCGTCTCCCTCTCTGGAGCTGCCAACAGTCTCCCCGCAAGCACCCATCCCCCCAGAAGCACACAAGC-----AGCAAAGTCACAGGGAGAGG--GTGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753107 625 - 1017659 CCTCCCTCGGC-CACAAGCCAAGAAC------AAGCGCACGC------GAA-----AA---------------GCTGCC--------GCCACCCCCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGTGTGCGAGGAGCG--TCTGTGGCACCTACGCTT-GGCGCTTACGGGGCCGGG---GCAGGCTCAAGAAGCACCT-------GAGA-----GAGCGCCA--CCCCCA----CCCGGCCTGCCA---------------------------CCCTCCCAATTGTG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CTGCCCGGCT---GGTG----------------TCCGGACCAACGACGCCCAGGAAGCGT--G---AGGATGAAGGGGCCTCCCGT-GGGGGCTGCTTGCAGCAGGACAGGGCCTGCCATGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTGCAAACCCCTCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCCTTCGGCCAGAAGCACCCTGAATA-------------GATGCTCTGGACATGCAGGACAGC--CT--GCTAGCGCCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACACGCCCGTCTCCCTCTCTGGAGCTGCCAACAGTCTCCCCGCAAGCACCAACCCCCCCAGAAGCACACAAGC-----AGCAAAGTCACAGGGAGAGG--GTGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109243744 629 - 110113093 CCTCCCTCGGC-cacaagccaagaac------aagcacacgc------gaa-----aa---------------gcTGCC--------GCCACGCGCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGTGTGTGAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCGGGG---ACAGGCTCAAGAAGCACCT-------GAGA-----GCGCGCCA--CCccca----ccctgcctgcca----------------------c-cctccctcccAATGGTG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCCGGACCAACGACGCCCAGGAAGCGT--G---AGGATGAAGAGGCCTCCCGT-GGGGGCTGCTCGCAGCAGGACAGGGCCTGCCATGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTTCAAACCCTTCTGGTCCCCAAGCAGCCTGACCTCAGCCTCT--GCCCTGAGGGACCAGCCTGCGGCCAGAAGCACCCTGAACA-------------GATGCTCTGGACACGCAGGACAGC--CT--GCCAGCGCCCCAGCAGGCCGTGCC-CT-GGGCAGCCCACACGCCCGTCTCCCTCTCTGGAGCTTCCAACAGTCTCCCCGCAAGCACCGACCCCCCCAGAAGCACACAAGC-----AGCAAAGTCACAGGGAGAGG--GTGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91962698 644 - 92844088 CCTCCCTCGGCGCACAAGCCAGGAAC------AAGCACACGC------AAA-----AA---------------GCTGCC--------GACGCCCGCCTGGG-AG-----------GATCCCTCGGCCA-GAGCTGCCCTCTGCGTGCGAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--CCccca----ccctgcctgcca----------------------c-cctccctcccCGTGGGG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCTGGACCAATGATGCCCAGGGAGTGT--G---AGGATGAAGGGGCTTCCCGT-GGGGGCTGCTTGCGGCAGGACAGGACCTGCCACGGGTCG-------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTCCAAACCC-TCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCATGCGGCCAGAAGCACCCTGGACGGAAGCTCTGGACAGAAGCTCTGGACAGGCAGAACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACATGCCCGTCTCCCTCTCTGAGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGCAGCAGAGCAAAGTCGCAGGGAGAGG--GTGGC i rheMac8.chr10 C 0 I 17 s macFas5.chr10 95610247 644 + 96509753 CCTCCCTCGGCGCACAAGCCAGGAAC------AAGCACACGC------AAA-----AA---------------GCTGCC--------GACGCCCGCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGCGCGCGAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--CCccca----ccctgcctgcca----------------------c-cctccctcccCGTGGGG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCTGGACCAATGATGCCCAGGGAGTGT--G---AGGATGAAGGGGCTTCCCGT-GGGGGCTGCTTGCAGCAGGACAGGACCTGCCACGGGTCG-------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTCCAAACCC-TCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCATGCAGCCAGAAGCACCCTGGACGGAAGCTCTGGACAGAAGCTCTGGACAGGCAGAACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACATGCCCGTCTCCCTCTCTGAGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGCAGCAGAGCAAAGTCGCAGGGAGAGG--GTGGC i macFas5.chr10 C 0 I 8 s macNem1.NW_012014244v1 16065701 644 - 16982598 CCTCCCTCGGCGCACAAGCCAGGAAC------AAGCACACGC------AAA-----AA---------------GCTGCC--------GACGCCCGCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGCGTGCGAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--CCCCCA----CCCTGCCTGCCA----------------------C-TCTCCCTCCCCGTGGGG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCTGGACCAATGATGCCCAGGGAGTGT--G---AGGATGAAGGGGCTTCCCGT-GGGGGCTGCTTGCAGCAGGACAGGACCTGCCACGGGTCG-------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTCCAAACCC-TCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCATGCGGCCAGAAGCACCCTGGACGGAAGCTCTGGACAGAAGCTCTGGACAGGCAGAACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACATGCCCGTCTCCCTCTCTGAGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGCAGCAGAGCAAAGTCGCAGGGAGAGG--GTGGC i macNem1.NW_012014244v1 C 0 I 8 s cerAty1.NW_012001373v1 2909056 631 - 3785965 CCTCCCTCGGCGCACAAGCCAGGAAC------AAGCACACGC------GAA-----AA---------------GCTGCC--------GTCGCCCGCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGCGTGCGAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--CCccca----ccctgcctgcca----------------------c-cctccctcccCGTGGGG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCCGGACCAATGATGCCCAGGGAGTGT--G---AGGATGAAGGGGCTTCCCGT-GGGGGCTGCTTGCAGCAGGACAGGACCTGCCACAGGTCG-------TCTCTGGCCTGGGC----------TTCC----ACCCCC-----ACTTCCAAACCC-TCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCATGCGGCCAGAAGCACCCTGGACG-------------GAAGCTCTGGACAGGCAGGACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CG-GGGCAGCCCACATGCCTGTCTCCCTCTCTGGGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGCAGCAGAGCAAAGTCGCAGGGAGAGG--GTGGC i cerAty1.NW_012001373v1 C 0 I 17 s chlSab2.chr2 89581406 632 - 90373283 CCTCCCTCGGCGCACAAGCCAGGAAC------AAGCACACGC------GAA-----AA---------------GCTGCC--------GACGCCCGCCTGGG-AG-----------GAGCCCTCAGCCA-GAGCTGCCCTCTGTGTGCGAGGGGTG--TCCATGGCACCTACGCTT-GGCACTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--ctccca----ccctgcctgcca----------------------c-cctccctcccCATGGGG-----AAACTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAGCAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCTGGACCAATGATGCCCAGGGAGTGT--G---AGGATGAAGGGGCTTCCCAT-GGGGGCTGCTTGCAGCAGGACAGGACCTGCCATGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTCCAAACCC-TCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACTAGCATGCGGCCAGAAGCACCCTGAACA-------------GAAGCTCTGGACAGGCAGGACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACATGCCCGTCTCCCTCTCTGGGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGCAGCACAGCAAAGTCGCAGGGAGAGG--GTGGC i chlSab2.chr2 C 0 I 17 s manLeu1.NW_012104365v1 5456195 629 + 6149316 CCTCCCTCGGCGCACAAGCCAGGAAC------AAGCACACGC------GAA-----AA---------------GCTGCC--------GACGCCCGCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGGGTGCGAGGGGCG--TCCGTGGCACCTACGCTT-GGCGCTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--CCccca----ccctgcctgcca----------------------c-cctccctcccCGTGGGG-----AAATTCA-GA-------------------------------------TGT----------GTGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CCGCCCAGCT---GGTG----------------TCTGGACCAATGATGCCCAGGGAGTGT--G---AGGATGAAGGGGCTTCCCGT-GGGGGCTGCTTGCAGCAGGACAGGACCTGCCACGGGTCA-------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTCCAAACCC-TCTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGGGACCAGCATGCGGCCAGAAGCACCCTGGACG-------------GAAGCTCTGGACAGGCAGGACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACATGCCCGTCTCCCTCTCT-GGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGC-GCAGAGCAAAGTCGCAGGGAGAGG--GTGGC i manLeu1.NW_012104365v1 C 0 I 17 s colAng1.NW_012114444v1 4689294 632 - 5823884 CCTCCCTCGGCgcacaagccaagaac------aagcacacgc------gaa-----aa---------------gcTGCC--------GACACCCGCCTGGG-AG-----------GAGCCCTCGGCCA-GAGCTGCCCTCTGTGTGCAAGGGGTG--TCTGTGGCACCTACGCTT-GGCGCTTACGGGGCTGGG---GCAGGCTCAAGAAGCACCTGG-----GAGA-----GAGTGCCA--CCccca----ccctgcctgcca----------------------c-cctccctccctGTGCGG-----AAATTCA-GA-------------------------------------TGT----------GCGGTG---------CCTGCAGGAAACAGGAGGCTGA-GGA----GCATCCAGAGCC--CTGCCCAGCT---GGTG----------------TCTGGACCAATGATGCCCAGGGTGTGT--G---AGGATGAAGGGGCTTCCGGT-GGGGGCTGCTTGCAGCAGGACAGGGCCTGCCATGGGTTGT------TCTCTGGCCTGGGC----------TCCC----ACCCCC-----ACTTCCAAACCC-TTTGGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCTGAGAGACCAGCATGCAGCCAGAAGCACCCTGAACA-------------GATGCTCTGGACAGGCAGGACATC--CT--GCTAGAACCCCAGCAGGCCGTGCC-CC-GGGCAGCCCACATGCCTGTCTCCCTCTCTGGGGCTGCCAACAGTCTGCCCGCAAGCACCGACTCC----AAAGCACACAAGCAGCAGAGCAAAGTCGCAGGGAGAGG--GTAGC i colAng1.NW_012114444v1 C 0 I 17 s calJac3.chr5 57395917 567 + 159171411 TTTCCCTCGGTGCACAAGCCAAGAAC------AAGCAAACGC------AAA-----AA---------------GCTGCT--------GCCACCCGCCCGGG-AG-----------GAGCTCTCGACCA-GAGCTGCCCTCGGTGCTCAAGGGGTG--TTCCCGGCACCTGCACTT---------------------------------------------------------------CA--CC-CCA----CGCTGCCTGCTG---------------------------CCTTCCCCTCGGTG-----ACATTCA-GA-------------------------------------TGT----------GCAGGG---------CCTGCAGGGAGCAGGAGGCTGG-GGAGCCGGCATCTAGAGCC--CGACCCAGCT---GGTG----------------TCTGGACCAGCGACACCCAGGGAGCAT--G---TGCATGAAGGGGCCTCCAGT-GGGGGCTGCTCGAAGCAGGATG-GGCCTGGTGTGGGTCAT------GCTCTGGCCGGGGC----------TCCC----AGCCCA-----ACTTCCAAACCCCTCTAGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCCAA---ACCAGCCTGCGACCGGAAACACCCTGAACA-----------CAGATGCTCTGGAAAGGCAGGACAGG--CT--GCCAGAGTCCAAGCAGGCCTCGTC-CC-AGACAGCCCACAT-CCCATTGCCCTCTCTGGGGAT------------CCCGCAAGCACCGACCCCT---GGAG--CACAAGCAGCAGCACAAAGCCGCAGGGAGAGG--GTGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517296 560 + 16356641 CTTCCCTCGGCGCCCAAGCCAAGAAC------AAGCAAACAC------GGA-----AA------------------GCT--------GCCGCCCGCCCGGG-GG-----------GAGCCCTCGACCA-GAGCGGCCCTCGGTGCTCGAGGGGTG--TCCCCGGCACCTGCGCTT---------------------------------------------------------------CA--CCGCCA----CGCTGCCTGCCG---------------------------CCGTCCCCGTGGTG-----ACATTCA-GA-------------------------------------TGT----------GCGGGG---------CCTGCAGGGAGCGGGAGGCGGG-GGAGCTGGCATCCAGACCC--CCGCCCAGCT---GGTG----------------TTGGGACCAGCGACGCCCAGGGAGCCG--G---CACATGAAGGGGCCTCCAGT-GGGGGTTGCTCAAAACAGGACG-GGCTTGGCGTGGGCCGT------GCTCTGGCCGGGGC----------TCCC----AGCCCC-----ACTTCCAAACCCCTC-AGTCCCCAAGCAGCCTGACCTCAGCCCCC--GCCCCAA---ACCAGCCTGCG-CCGGAAACGCCCTGAACA-----------CAGACGCTCTGGACACACAGGACAGC--CT--GCCAGAGTCCAAGCA-GCCTCGTT-CC-GGGCAGCCCACAC-CCCATCTCCCTCTCTGGGGAT------------CCCGCAAGCACCGACCCC----GAAG--CACAAGCCGCAGCGCAAAGTCGCAGGGAGAAG--G-GGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 363859 568 + 1231380 CCTCCCCCGGCGCACAAGCCAAGAAC------AAGCAAACTC------AAA-----AA---------------GCTGCC--------GCCACCCGCCCGGG-AG-----------GAGCCCTCAACCA-GAGCTGCCCTCGCTGCTCGAGGGGTG--TCCCCGGTACCTGCACTT---------------------------------------------------------------CA--CCCCTA----CGCTGCCTGCCG---------------------------CCTTCCCCGCAGTG-----ACAATCA-GA-------------------------------------TGT-----------CAGGG---------CCTGCAGGGAGCAGGAGGCTGG-GGAGCCAGCCTCCAGAGCC--CCACCCAGCT---GGTG----------------TCAGGAGCAGCAATGCCCAGGGAGCGG--G---CGCATGAAGGGGCCTCCAGT-GGGGGCTGCTCGAAGCAGGACGTGGCATGGCATGGGTCAT------GCTCTGGCCGGGGC----------TCCC----AGCCCC-----ACTTCCAAAGCCCTCTAGTCCCCAAGCAGCCTGACCTCAGCCCCT--GCCCCAA---ACCAGCCTGCAGCCGGAAACGCCCTGAACG-----------CAGATGCTCTGGACATGCAGGACAGC--CT--GCCAGAGTCCAAGCAGGCCTCGTC-CC-GGGCAGCCCACAC-CCCATCTCCCTCTCTGGGGAT------------CCCGCAAGCACCGACCCCC---AAAG--CACAAGCAGCAGCACAAAGTCGCAGGGAGAGG--GTGGC i cebCap1.NW_016107870v1 C 0 I 16 s aotNan1.NW_018500483v1 1926178 570 + 11732439 CTTCCCTCGGCGCACAAGCCAAGAAC------AAGCAAACGC------GAA-----AA---------------GCTGCC--------ACCACCCGCCCGGG-AG-----------GAGCCCTCGACCA-GAGCTGCCCTCGGTGCTCAAGGGGTG--TCCCCGGCACCTGCGCTT---------------------------------------------------------------CA--CCCCCA----CGCTGCCTGCTG---------------------------CTCTCCCTGCGGTG-----ACATTCA-GA-------------------------------------TGT----------GCGGGG---------CCTGCAGGGAGCAGGAGGCTGG-GGAGCCGGCATCCAGAGCC--CCACCCAGCT---GCTG----------------TCGGGACCAGCAACACCCAGGGAGCGT--A---TGCATGAAGGCGCCTCCAGTGGGGGGCTGCTCGAAGCAGGATGGGGCGTGGCGTGGGTCGT------GCTCTGGCCAGGTC----------TCCC----AGCCCC-----ACTTCCAAACCCCTCTAGTACCCAAGCAGCCTGACCTCAGCCGCT--ACCCCAA---ACCAGCCTGTGGCCGGAAATGCCCTGAACA-----------CAGATGCTCTGGACATGCAGGAGAGC--CT--GCCAGAGTCCAAGCAGGCCTCGTC-CC-CGGCAGCCCACAC-CCCATCTCCCTCTCTGGGGAT------------CCCGCAAGCACCGACCCCC---GAAG--CACAAGCGGCAGCACAAAGTCGCAGGGAGAGG--GTGGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22141892 645 + 22939663 TCTCTCTCACC-CCGTAGCCAAGGACA----AAAGCACACTC------AGGG--CCAG---------------GCTCTCCTGGCTGGGCCGGCTGCCTGGG-AG--------AGTGAGCCGTCAGCCA-GGGCCACAGGGCATGTGCCAGGGGCA---CTGTGGCATCTGCACAGCAGCACTCACGGGGCCAGG--CCCAAGCTTAGGATCAGTATGG-----GGAA-----GAAGCCCA--GCCCCAGAGCTCCTGCCCACCTGGCACAAGCAGGAGATTGCCCTC-ACTCCGTGCCAGTGGGGTGCCACCATCCA-TA--GAGACC-----------------------------TGC----------TCGGCC---------CCATCTGCACGACGGCAGCCCA-GAG----GTCTGCTTGGCC--CCATCTGAAT---GATG----------------ACAG-----------CCCAGAGAGTGTTGG---GGGATGAATGGGCATCCTGA-GAGA---TCGTGCAAGCAGGCAGAGCATGGCCTGGATCGT------G--CTGGCCCAGGT----------TCCC----AGCCACCCCATACTTCCAAGCTTATCTGGACCCCAG------------CAGCCCCT--GCCCTAAGAGACCAGCCT-TGGCCAGAAGCACCCTAGACA-----------CCGAAGAGCTGGGCAAGCAGGACAGCCTCT--ACCAGGGTCCAAGCAGACTGTATCTCC-CAGGAGGCCACCCGCC---CTCTCCCCCCAGGGCTGCCAACTGTCTCCCC-------------------------CACAAGCAGCGGAGAGAAGTCACGCAGAGAAA-TGTGG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181090883 637 + 182113224 CCTCCCAAGCC-ACCAAGCCAAGATC-----AAAGCAAGCATCGGGTAGGA-----AG---------------GTCTCC--------AGAGCTCCCCCTAA-AGCCCCAGCAAGAGAGCCCATGAACA-GAACTACC--CAGTTTGTGAGGGGCA------TGACACCAGC------------------CAGAG---GTCAGCTCAGGTAGAATCCAGGAAGCAAGC-----AAACCCCA--GCCTCT----TGCTTTCTGTCG---------------------------CAATCTCCAGAGTG-----AAATTCA-AAAGGAAACCAGCCATTAGATGGCCTTTGCCCTAGTCAGTGC----------GTGGGC---------TCAGCA--ATGCAGGGAGCCG---------GCATCCATAGACAACTGCCCAGCT---TGTG----------------CCTGGACTGAGGATGCCCAAGGGACAG---------------------TCCAC-AAGAAC-----ACAG-AGGGCAGGGCTGACTTCGG-------------------CTGGGC----------TCCTGCAGACCCAT-----TCTTCCTAGCACTTCTGGTCTTCAAGCAGCCTGGCCTTAGTCTCTTAGTCCTAAAGGTTCAACCTGTGGCCAGAAGCA-CCTGGTCA-----------CATATGCTATGGACAAGCAAGGTAAC--TTCAGCCAGGGCCTGAGCAGGCTGCCTC-CCAGGGCAGCCCAGACACCCAGCTCCCTGTCTGCAGCTG-CAACATTCTCCCCACAAGCACCCGCCTCC---AGCACACAGAGCCAGCAGAG-AGGCCCATGGGGCGGGGAGGTGGC i mm10.chr2 I 786 C 0 s canFam3.chr24 47069470 620 + 47698779 CCGCCCTCACCCCACAAGCCAAGGACAGAAGCAAACAAACAC------GAAGGATGGG---------------GCTCTG--------GCCACCTGCTCGGG-GG---------GAGAGTCCTCGAC---GAGC--CCCCGTGCGTGTCAGGGGCACTTTCCTGGCACCTGCGCTTTGGCGTTGCCGGGACCAGGGGAGCGAGTTCGGG-GGCGTCCGG-----GGCA-----CAAAGCCAAGCTCCAG----CCCCTCCTCCCC----------------------CACCTGCCTCCCCGCAGCA-----AA---CG-GG-------------------------------------GAC----------GGGGCG---------ACTGGGAGGCCCGGACGGACGT-GGC----CAAGCCAGG--T--CTGCCCGGCTCAGGGTGAGGGGGCCGCACCTACACGGGACCGCGGACACCCAGGAAAAGT--GCAAAGGGGGAAGTGACATTC-AT-GGGATTTGCACACAGCAAGGCTGAGCTTGGCCTGGGCTC----------CTGGGCTGG--------------CC----ACGGGC-----ACCTGTGGCCCT-TCCGGTGCCCGAGCAGCCTGCCCACAGCCCCT--GGCCCAAGGGGCT-GCCTGTGGCCGGAAGCACCGTGGACA-------------CAAGCTCTGTACAAGCAGGACGGC--TT--CC--------------GCCGGGGC-CG-GAA--------------ACCTCCGCTCCTGGGGCCG----CAAGCCTCCCCCAAGCGCCTACCTCCA--GGAACACACAGGCAACGCGGACAGGGTGTGGGGAGGC-------- i canFam3.chr24 I 13 C 0 s dasNov3.JH567899 85941 626 + 555560 GCACCC------CACAAGGCAAGGAC------AAGAGCAAAC------GCA-----GTGCGTGCCCCTGCCCTGCTCTC--------CCTGCCTGCCCGGGCAA-----------GGGTCCAGGGCCACGAGGAGCC-----TCTGAGAGGGGGG--TCTGTG-CGCCTGCACTA-TCCGC---AGGGGCAAGG---GAGCGAGCGGGCAGTCTGCGC-----GGGAAAGCCGAGCCGCA--GCCTCA-------TGTCCGTGG----------------------C-CTGACCTCTCCAGGGTG-----TGACGCATGA-------------------------------------TGCTAAGACCGGAGCGGTGAGCACAGGCCCTGCTGCGCGAGGGACGCCGGCTGA----GCTTGCT--CCC--CCACCCAGCG---GGTC----------------CAGGGAGCCGGCATCCACAGGGCACCA--C---AAGGTCCAG------CCCAC-GCCGGGCACACACAGCTGGAGTGGG-----TGGGGGTCACGTTCAGCCCTTGGCCTGGGCAGGGGGCACGGCTG----CCTCAT-----GCTTCTGACCCT-TCTGGTCTCCAAGCAGCTTGA------CCACT--GCA---------------GTGGCCAGAAGC-CCCCAGATG-----------TGGAAGCTC-GGGCAAGCAGGACGGC--CTCCACCAGGG-CCAAGCAGGCTGTGCCTCC-TGGCTGGCCCCAATCCCTTC-CCCACTCTGGA-CTGCCAACAGTCTCCCC-CAAGCACCTGCCTG----------CGTGAGC------ACATGGCAGTGAAGAGAAA--GCCGC i dasNov3.JH567899 C 0 C 0 a score=1560.000000 s hg38.chr20_KI270871v1_alt 4077 1 + 58661 A s panTro5.chr20 65573860 1 + 66533130 A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61343111 1 + 62195757 A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753732 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109244373 1 - 110113093 A i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95610899 1 + 96509753 G i macFas5.chr10 I 8 C 0 s macNem1.NW_012014244v1 16066353 1 - 16982598 G i macNem1.NW_012014244v1 I 8 C 0 s aotNan1.NW_018500483v1 1926748 1 + 11732439 G i aotNan1.NW_018500483v1 C 0 I 15 s canFam3.chr24 47070090 1 + 47698779 A i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 86567 1 + 555560 A i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181091520 0 + 182113224 C e cebCap1.NW_016107870v1 364427 16 + 1231380 I e otoGar3.GL873542 22142537 0 + 22939663 C e manLeu1.NW_012104365v1 5456824 17 + 6149316 I e saiBol1.JH378156 15517856 0 + 16356641 C e calJac3.chr5 57396484 0 + 159171411 C e colAng1.NW_012114444v1 4689926 17 - 5823884 I e chlSab2.chr2 89582038 17 - 90373283 I e cerAty1.NW_012001373v1 2909687 17 - 3785965 I e rheMac8.chr10 91963342 17 - 92844088 I a score=11952.000000 s hg38.chr20_KI270871v1_alt 4078 7 + 58661 TGGAGTC s panTro5.chr20 65573861 7 + 66533130 TGGAGTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61343112 7 + 62195757 TGGAGTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753733 7 - 1017659 TGGAGTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109244374 7 - 110113093 TGGAGTC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95610900 7 + 96509753 TGGGGGC i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16066354 7 - 16982598 TGAGGGC i macNem1.NW_012014244v1 C 0 I 1 s calJac3.chr5 57396484 6 + 159171411 -GGGGCC i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15517856 6 + 16356641 -GGGGCC i saiBol1.JH378156 C 0 I 1 s mm10.chr2 181091520 2 + 182113224 -----CC i mm10.chr2 C 0 C 0 s canFam3.chr24 47070091 3 + 47698779 ----GCC i canFam3.chr24 C 0 I 2 s dasNov3.JH567899 86568 7 + 555560 CGGAGGG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1926749 15 + 11732439 I e cebCap1.NW_016107870v1 364427 16 + 1231380 I e otoGar3.GL873542 22142537 0 + 22939663 C e manLeu1.NW_012104365v1 5456824 17 + 6149316 I e colAng1.NW_012114444v1 4689926 17 - 5823884 I e chlSab2.chr2 89582038 17 - 90373283 I e cerAty1.NW_012001373v1 2909687 17 - 3785965 I e rheMac8.chr10 91963342 17 - 92844088 I a score=69789.000000 s hg38.chr20_KI270871v1_alt 4085 11 + 58661 -GCGGGCCCCCC s panTro5.chr20 65573868 11 + 66533130 -GCGGGCCCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61343119 11 + 62195757 -GCGGACCCCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753740 11 - 1017659 -GCGGGCCCCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109244381 11 - 110113093 -GCGGATCCCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91963359 11 - 92844088 -GCGGGTCCCCC i rheMac8.chr10 I 17 C 0 s macFas5.chr10 95610908 11 + 96509753 -GCGGGTCCCCC i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16066362 11 - 16982598 -GCGGGTCCCCC i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2909704 11 - 3785965 -GCGGGTCCCCC i cerAty1.NW_012001373v1 I 17 C 0 s chlSab2.chr2 89582055 11 - 90373283 -GCGGGTCCCCT i chlSab2.chr2 I 17 C 0 s manLeu1.NW_012104365v1 5456841 11 + 6149316 -GCGGGTCCCCC i manLeu1.NW_012104365v1 I 17 C 0 s colAng1.NW_012114444v1 4689943 11 - 5823884 -GCGGGTCCCCC i colAng1.NW_012114444v1 I 17 C 0 s calJac3.chr5 57396491 9 + 159171411 -GTGGGCCTG-- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15517863 9 + 16356641 -GTGGGCCCG-- i saiBol1.JH378156 I 1 C 0 s mm10.chr2 181091522 11 + 182113224 -TCAAGCCCCTC i mm10.chr2 C 0 I 5 s canFam3.chr24 47070096 10 + 47698779 --CAAGCCCCTC i canFam3.chr24 I 2 I 1 s dasNov3.JH567899 86575 12 + 555560 GGCCAGCGCCCC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1926749 15 + 11732439 I e cebCap1.NW_016107870v1 364427 16 + 1231380 I e otoGar3.GL873542 22142537 0 + 22939663 C a score=13067036.000000 s hg38.chr20_KI270871v1_alt 4096 1181 + 58661 -ATGGAGCAGGGTC-CGAAGCATGCACGGATGCAGATAGGC-AGCATGC-------AGCCCCA---------------CCAGCCCT------------------------CCAAGGCCAGCACC-ACCGGCGGCATGCACAT--------------GCC--AAGGAGAGCC--------CC-ACAGGAGCACGA-CA--------CAGCCACCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG--------------CACACACCC---------AAC------AGCAGACAG--GGGACGCGGGGACAGGGGAGGTG--CGGGT-------------CACGGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------ATTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACACA-GA-CGGAGCTGCCTCCCGCGGTCGAGGCAGCCAGGAAGGCTCAGTCATCCTCAGGTACGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGGAAACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCTGGCT---GTGCGCAGGACATCGCCTGGC-GTGGGG----AGCAAGAAGAAGCAC-----CTTCCCCCAGCTCCGCCCTGCACG--CA--GCTGTCGGCTAGAATAGAG-GGAG--CTGAGC-CCGCACCGCCAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-CGTCAGTCCGTGCGGCGTGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACTGCAA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCCGGAGAAGAAAACACTTCCCTATTTCTGAAGG-------AAAAAAATCCCTG---------T--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCTGACAA----------AACAATAATACA--TG-- s panTro5.chr20 65573879 1181 + 66533130 -ATGGAGCAGGGGC-CGAAGCATGCACGGATGCAAATAGGC-AGCATGC-------AGCCCCA---------------CCAGCCCT------------------------CCAAGGCCAGCACC-ACCGGCGGCATGCACGT--------------GCC--AAGGAGAGCC--------CC-ACGGGAGCACAA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGACGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG--------------CACACACCC---------AAC------AGCAGACAG--GGGACGCGGGGACAGGGGAAGTG--CGGGT-------------CACGGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------ATTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATGAGGACCCTGAGAAGCCCGGCACACACA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCATCCTCAGGTACGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGGAAACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCGCGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCTGGCT---GTGCGCAGGACATCGCCTGGC-GTGGGG----AGCAAGAAGCAGCAC-----CTTCCCCCAGCTCCGCCCTGCACG--CA--GCTGTCGGCTAGAATAGAG-GGAG--CTGAGC-CCGCACCGCCAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-CGTCAGTCCGTGCGGCGTGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGTG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACTGCAA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCCGGAGAAGAAAACACTTCCCTATTTCTGAAGG-------AAAAAAATCCCTG---------T--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCGACAA----------AACAATAATACA--TG-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61343130 1180 + 62195757 -ATGGAGCAGGGGC-CGAAGCATGCACAGATGCAGATAGGC-AGCATGC-------AGCCCCA---------------CCAGCCCT------------------------CCAAGGCCAGCACC-ACCGGCGGCATGCACGT--------------GCC--AAGGAGAGCC--------CC-AGGGGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGACGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG--------------CACACACCC---------AAC------AGCAGACAG--GGGACGCGGGGAC-GGGGAAGTG--CGGGT-------------CACGGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------ATTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACACA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCATCCTCAGGTACGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGGAAACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCGCGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCTGGCT---GTGCGCAGGACATCGCCTGGC-GTGGGG----AGCAAGAAGCAGCAC-----CTTCCCCCAGCTCCGCCCTGCACG--CA--GCTGTCGGCTAGAATAGAG-GGAG--CTGAGC-CCGCACCGCCAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGTGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-CGTCAGTCCGTGCGGCGTGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACTGCAA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGTGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCCGGAGAAGAAAACACTTCCCTATTTCTGAAGG-------AAAAAAATCCCTG---------T--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCGACAA----------AATAATAATACA--TG-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 753751 1180 - 1017659 -ATGGAGCCGGGTC-CGAAGCATGCACGGATGCAGATAGGC-AGCATGC-------AGCCCCA---------------CCAGCCCT------------------------CCAAGGCCAGCACC-ACCGGCGGCATGCACGT--------------GCC--AAGGAGAGCC--------CC-ACGGGAGCATGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG--------------CACACACCC---------AAC------AGCAGACAG--GGGACGCGGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCT-CCCCGTCCT-----------------------ATTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCACGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACACA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCATCCTCAGGTGCGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGGAAACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCGCGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCTGGCT---GTGCGCAGGACATCGCCTGGC-GTGGGG----AGCAAGAAGAAGCAC-----CTTTCCCCAGCTCCGCCCTGCACG--CA--GCTGTCGGCTAGAATAGAG-GGAG--CTGAGC-CCGCACCGCCAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-CGTCAGTCCGTGCGGCGTGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACTGCAA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCCGGAGAAAAAAACACTTCCCTATTTCTGAAGG-------AAAAAAATCCCTG---------T--T---TTTTTTTTCCTCCAAAAATATCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCGACAA----------AACAATAATACA--TG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109244392 1179 - 110113093 -ATGGAGCAGGGTC-CGAAGCATGCACGGATGCAGATAGGC-AGCATGC-------AGCCCCA---------------CCGGCCCT------------------------CCAAGGCCAGCACC-GCCAGCGGCATGCACGC--------------GCC--AAGGAGAGCC--------CC-ACAAGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAAGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG----------------CACACCC---------GAC------AGCAGACAG--TGGACACAGGGACAGGGGAGGTG--CGGGT-------------CACGGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACACA-GA-TGGAGTTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCATCCTCAGGTGCACAGCAGGGGTGCTAGAGTGA-C-AGCCCCAGGGGAAACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGTGCGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GCGTGCAGGACATTGCCTGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCACCCTGCACG--CA--GCTGTCGGCTGGAATAGAG-GGAG--CTGAGC-CCACACCACGAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACTGCAA-------CCACCCAG----GGTGTT---GTATGCA-GT-CC----------------------CCAGCGGCACAGCTTGTGCCCAAGCAAGGCCAGCAAGGAAG----GTGCAC-C-ATCGTC-TCCACC-ATCCGGAGAAGAAAACACTTCCCTATTTCTGAAGG-------AAAAAAATCCCTG---------T--T---TTTTTTTTCCTCCAAAAATTGCTTTTCCTTCCAAAGCCATAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91963370 1189 - 92844088 -GTGGAGCAGGGTC-TGGAGCATGCGTGGATACAGGTAGGC-AGCATGC-------AGCCCCA---------------CCAACCCT------------------------CCGAGGCCAGCACC-ACGGGCGGCATGCACGC--------------GCC--AAGGAG-GCC--------CC-ACGTGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------CACACACCC---------CAC------AGCAGACAG--GGGACG-AGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACGCA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGG-AACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GCGTGCAGGACATCGCCAGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCGGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACCGCCA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCAGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCTGGAGAAGAAAACACTTCCCTACTTCTGAAGG-----AAAAAAAAATCCCTGGTTTTTGTGG--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95610919 1190 + 96509753 -CTGGAGCAGGGTC-TGGAGCATGCGCGGATACAGGTAGGC-AGCATGC-------AGCCCCA---------------CCAACCCT------------------------CCGAGGCCAGCACC-ACGGGCGGCATGCACAC--------------GCC--AAGGAG-GCC--------CC-ACGTGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------CACACACCC---------CAC------AGCAGACAG--GGGACGCAGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACGCA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGG-AACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GCGTGCAGGACATCGCCAGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCGGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACCGCCA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCAGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCTGGAGAAGAAAACACTTCCCTACTTCTGAAGG-----AAAAAAAAATCCCTGGTTTTTGTGG--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16066373 1190 - 16982598 -GTGGAGCAGGGTC-TGGAGCATGCGCGGATACAGGTAGGC-AGCATGC-------AGCCCCA---------------CCAACCCT------------------------CCGAGGCCAGCACC-ACAGGCGGCATGCACGC--------------GCC--AAGGAG-GCC--------CC-ACGTGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------CACACACCC---------CAC------AGCAGACAG--GGGACGCAGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACGCA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGG-AACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GTGTGCAGGACATCGCCAGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCGGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACCGCCA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCAGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCTGGAGAAGAAAACACTTCCCTACTTCTGAAGG-----AAAAAAAAATCCCTGGTTTTTGTGG--G---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------CACAATAATACA--TG-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2909715 1192 - 3785965 -GTGGAGCAGGGTC-TGGAGCATGCGCGGATACAGGTAGGC-AGCATGC-------AGCCCCA---------------CCAACCCT------------------------CCGAGGCCAGCACC-ACGGGCGGCATGCACGC--------------GCC--AAGGAG-GCC--------CC-ACGTGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------CACACACCC---------CAC------AGCAGACAG--GGGACGCAGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GTGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACGCA-GA-CGGAGCTGCCTCCCGCGAGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGG-AACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GCATGCAGGACATCGCCAGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCGGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACCGCCA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCAGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATTGTC-TCCACC-GTCTGGAGAAGAAAACACTTCCCTACTTCTGAAGG-----AAAAAAAAATCCCTGGTCTTTGTGGTTT---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89582066 1190 - 90373283 -GTGGAGCAGGGTC-TGGAGCATGCACGGATGCAGGTAGGC-AGCATGC-------AGCCCTA---------------CCAACCCT------------------------CCGAGGCCAGCACC-ACGGGCAGCATGCACGC--------------GCC--AAGGAG-GCC--------CC-ACGTGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------CACACACCC---------CAC------AGCAGACAG--GGGACTCAGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGAGAGCCGCGGGTCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCAGCACACACA-GA-CGGAGCTGCCTCCCGCAGGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGG-AACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTGCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GCATGCAGGACATCGCCAGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCAGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GCGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACTGCAA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCAGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCTGGAGAAGAAAACACTTCCCTACTTCTGAAGG----AAAAAAAAAATCCCTGGTTTTTGT-T--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5456852 1190 + 6149316 -GTGGAGCAGGGTC-TGGAGCATGCGCGGATACAGGTAGGC-AGCATGC-------AGCCCCA---------------CCAACCCT------------------------CTGAGGACAGCACC-ACGGGCGGCATGCACGC--------------GCC--AAGGAG-GCC--------CC-ACGTGAGCACGA-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------TGTGTTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------CACACACCC---------CAC------AGCAGACAG--GGGACGCAGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCGCGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACGCA-GA-CGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGTGA-C-AGCCCCAGGGG-AACGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GCGTGCAGGACATCGCCAGGC-GTGGGG----AGCAAGAAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCGGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GCGGTGG----------------GTCAGAATTGGAGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACCGCCA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGCAGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACC-GTCTGGAGAAGAAAACACTTCCCTACTTCTGAAGG-----AAAAAAAAATCCCTGGTTTTTGTGT--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4689954 1190 - 5823884 -CTGGAGCAGGGTC-TGGAGCATGCACGGATGCAGGTAGGC-GGCATGC-------GGCCCCA---------------CCAACCCT------------------------CCGAGGCCAGCACC-ACGGGTGGCATGCACGC--------------GCC--AAGGAGAGCC--------CC-CCGTGAGCACGA-CA--------CAGCTGCCTCCACCTTGC--------CGGGC-------TGTGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGCCTG--------------TACACACCC---------CAC------AGCAGATAG--GGGACGCGGGGACAGGGGAGGTG--CGGGT-------------CACAGTGCAGG---CCAGGAGCC-------------------------------CATGGTACAAA-------------G--------------------------------------------------------------------------GGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTCCA-CCTGCCCT----------------------------AAACCAGGCCTGT-TGTTGGG-AGAGGGAGCCACGGGCCTCTGGCTTTCTGGGGCTTCTGATGCATCAGGACCCTGAGGAGCCCGGCACACACA-GA-TGGAGCTGCCTCCCGCGGGCGAGGCAGCCAGGAAGGCTCAGTCGTCCTCAGGTGTGCAGCAGAGGTGCTAGAGAGA-C-AGCCCCAGGGG-AATGCTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCGCGGACGCCTTGCTGGGTTCAGAG--CCCCTGGCTGGCC--CCTCCAGCT---GTGTGCAGGACATCGCCTGGC-GTGGGG----AGC---AAGAACCAC-----CTTCGCCCAGCTCCGCCCTGCAGG--CA--GCTGTCGGCTGGAATAGAA-GGAG--CTGAGC-CCGCACCGCGAGG----GTGGTGG----------------GTCAGAATTGGGGTT----------GGGGCGCCAGCCTCCCCCTGGCTCCTCCAGAACCTCTAGTAAGCA-------------GGGAGGGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCATCCGGGGCAGCATCCACACAGGGGCCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCA--CCGGCA-ACAGCACACGGCCGGGAGCAGGG-AAACTG-------AGGCACCGCAA-------CCACCCAG----GGTGTT---GTGTGCA-GT-CC----------------------CCAGAGGCAGAGCTTGCGCCCAAGCAAGGTCAGCGAGGAAG----GTGCAC-C-ATCGTC-TCCACT-GTCTGGAGAAGAAAACACTTCCCTATTTCTGAAGG-----AAAAAAAAATCCCTGGtttttttgtttt---ttttttttCCTCCAAAAATACCTTTTCCTTCCAAAGCCACAGTTTGGGTTCATGTC--T-TAAAAGATGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA--TG-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57396500 1090 + 159171411 -GCGGAGCAGGGTC-CGGAGCATGCACGGATGCAGGTGGGC-AGCATGC-------AGCCC-----------------CCCACCCT------------------------CTGG------------------------------------------------------GCC--------CC-ACGTGGGCAGGG-CA--------CAGCCGCCTCCACCTTGC--------TGGGC-------CATGCTGGCCAGGAGGGAT----------------------------GG--GCCCCCAGCACAGGCCTG-------------------------------------------CAGACTG--GGGACACCAGGGCA-GGGAGGTG--CGGGT-------------------------------------------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------CAG---GCGGCTCCTCTCCCGTCCT-----------------------ATTTCCA-CCCGCCCT--------------------------------CAGGCCTGT-TATAGGA-AGAG------GAAGGCCTCTGGTGTTCTGGGGTTTTGGATGCATCAGGACCCTGAGGAGCCCGG--CACACA-GA-CAGAGCTGCCCCGCGCAGGCGAGGCAGCCGGGGAGGCTCAGTCGTCCTCAGGTGCACAGCAGAGGTGCTAGAGTGG-C-AGCCCCAGGGA-AACGCTCCCTGAA-GAGCAGTCGGGG-ACCCAGGAGGCACGAACACCTTGCTGGGTTCACAG---CCCTGGCTGGCC--CCTCTAGCT---GTGCGCAGGGCATCGCCTGGC-GTGGGG----AGC---AAGAATCAC-----CTTCACCCAGCTCCGTCCTGCGCG--CA--GCTG-TGGCTGGAATAGAG-GGAG--CCAAGC-CCGCACCACAAGG----TCGGTGG----------------GTCAGAACTGGGGTT----------GGGGCGCCAGCCT-CCCCTGGCTGCTCCAGAACCTGTAGTAAGCG-------------GGGC-AGGCAGAG---G--AGCCGTGCAGCAGT-GGTCAGTCCGTACGGCGCATTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGACCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCA--CCAGCA-ACAGCATATGGCTGGGAGCGGGG-AAACTG-------AGGCACCGCAA-------CCGCCCAG----GGTGTC---AGGCGCA--T-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGCGGAAG----CCGCAC-C-ACCG---TCTACC-GTCCGGAGTAGAAAACACTTCCCTATTTTTAAAGG-----AAAAACAATTCCCAGGTTT-----T--TTGGTTTTTTTTCCTCCAAAAATACCTTTTCCACCCAAAGCCACAGTTTGGGTCCATGTC--T-TAAAAGCTGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15517872 1133 + 16356641 -GTGGAGCAGGGTC-CGGAGCATGCACGGATGCAGG-GGGC-AGCATGC-------AGCGC-----------------CCCACCCT------------------------CCGGGCCCA-----------------GCACGC--------------TCA--GAGGTGAGCC--------CC-GCGCAGGCACGG-CA--------CAGCCGCCTCCACCCTGC--------TGGGC-------CATGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGTGCAGGACTG-------------------------------------------CAGACAG--AGGACACCGGGGCA-GGGAGGTG--CAGGT-------------CACGGTGCAGG---CCAGGAACC-------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------CGG---GCGGCTCCTCCCCCGTCCT-----------------------ATTTCCA-CCCGCCCT--------------------------------CAGGCCTGT-TGTAGGA-AGAGAAAGCCGAGGGCCTCTGGCGTTCTGGGGCTTT-GATGCATCGGGACCCTGAGGAGCCCAGCACACACA-GA-CGGAGCTGCCCCGCGCAGGCGAGGCAGCC-GGGAGGCTCAGTGGTCCTCAGGTGCACAGCAGAGGTGCTACAGTGG-C-ACCACCA-GGA-AACGCTCCCCGCA-GAGCAGTCGGGGTCCCCAGGAGGCACGAACGCCTGGCTGGGTTCACAG---CCCTGGCTGGCC--CCTCCAGCT---GTGCGCAGGGCATCGCCTGGC-GTGGGG----AGC---AAGAATCAC-----CTTCACCCAGCTCCGTCCTGCGCG--CA--GCTG-CGGCTGGAATAGAG-GGAG--CCGGGC-CCGCACCGCAAGG----TCGGTGG----------------GTCGGAACTGGGGTT----------GGGGCGCCAGCCT-CCCCTGGCTGCTCCAGAACCTGTGGTAAGCG-------------GGGC-AGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGACCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGTG--CCAGCA-ACAGCATGTGGCCGGGAGCGGGG-AAACTG-------AGGCGCCACAA-------CCGCCCAG----GGCGTC---GGGCGCA--T-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGAGGAAG----CCGCAC-C-GCCGTC-TCTACC-GTCCGGGGAAGAAAACACTTCCCTATTTTTAAAGG-----AAAAAAAAATTACTGTTTT------------TTTTTTTCCCTCCCAAAATACCTTTTCCTCCCAAAGCCACAGTTTGGGTCCATGTC--T-TAAAAGCTGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 364443 1135 + 1231380 -GTGGAGCAGGGTC-CGGAGCATGCACAGATGCAGGGGGGC-AGCATGC-------AGCGC-----------------CCCACCCT------------------------CCAGGCCCA-----------------GCATGC--------------GCG--GAGGTGAGCC--------CC-ACATGGGCACAG-CA--------CAGCCGCCTCTGCCTTGC--------TGGGC-------CATGCTGGCCGGGAGGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG-------------------------------------------CAGACAG--GGGACACCggggca-gggaggtg--caggt-------------cacggtgcagg---ccaggagcC-------------------------------CACAGTGCAAA-------------G--------------------------------------------------------------------------CGG---GCGGCTCCTCCCCCGTCCT-----------------------GTTTTCA-CCCGCCCT--------------------------------CAGGCCTGT-TGTAGGA-AGAGGAAGCCGAGGGCCTCTGGGGTTCTGGGGCTTC-GATGCATCAAGACCCTGAGAAGCCCGGCACACACA-GA-TGGAGCTGCCCCGCGCAGGCGAGGCAGCCGGGGAGGCTCAGTCGCCCTCAGGTGCACAGCAGAGGTGCTAGAGTGG-C-AGCCCTAGGGA-AACGTTCCCTGAA-GAGCAGTCGGGGACCCCAGGAGGCACGAACGCCTTGCTGGGTTCACAG---CCCTGGCTGGCC--CCTCCAGCT---GTGCGCAGGGCGTCGCCTGGC-G-GGGT----GGC---AAGAATCAC-----CTTCACCCAGCTCCGTCCTGCGCG--CA--GCTG-CGGCTGGAATAGAG-GGAG--CCAGGC-CCGCACCGCAAGG----TCGGTGG----------------GTCGGAACTGGGGTT----------GGGGCGCCAGCCT-CCCCTGGCTGCTCCAGAGCCTTTAGTAAGCG-------------GGGC-AGGCAGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGAGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGACCCTCTGCACGGGCTGCCTTTACTGGAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CCAGCA-ACAGCACATGGCCGGGAGCGGGG-AAACTG-------AGGCACCGCAA-------CCGCCCAG----GGTGTC---GGGCGCA--T-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGAGCAAG----CCGCAC-C-ACCGCC-TCTACC-ATCCGGAGAAGAAAACACTTCCCTATTTTTAAAGG-----AAAAAAA--TTCCTGGTTT-----T--T---TTTTTTTTCCTTGAAAAATACCTTTTCCTCCCAAAGCCACAGTTTGGGTCCACGTC--T-TAAAAGCTGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACA------ i cebCap1.NW_016107870v1 I 16 C 0 s aotNan1.NW_018500483v1 1926764 1113 + 11732439 -ATGGAGCAGGGTC-CGGAGCATGCACGGATGCAGCTGGGC-AGCATGC-------AGCCC-----------------CCCACCCT------------------------CCGGGCCCA-----------------GCACGC--------------ACG--GAGGTGAGCC--------CC-GCGTGGGCACGG-CA--------CAGTCGCCTCCACCTTGC--------TGGGC-------CATGCTGGCCAGGAGGGAG----------------------------GG--GCCCCCAGCGCAGGCCTG-------------------------------------------CAGACAG--GGGACACCGGGGCA-GGGAGGGG--CGGGC-------------------------------------------------------------------CACGGTGCAAA-------------G--------------------------------------------------------------------------CGG---GCGGCTCCTCCCCCGTCCT-----------------------ATTTCCA-CCTGCCCT--------------------------------CAGGCCTGC-TGTAGGA-AGAGGAAGCCGAGGGCCTCTGGCGTTCTGGGGCTTCGGATGCATCAGGACCCTGAGGAGCCCGGCACACACA-GA-CGGAGCTGCCCCGCACGGGCGAGGCAGCCGGGGAGGCTCAGTCGTCCTCAGGTGCACAGCAGAGGTGCTAGAGTAG-C-AGCCCCAGGGA-AACGCTCCCCGAA-GAGCAGTCGGGA-CCCCAGGAGGCACGAACGCCTTGCTGGGTTCACAG---CCCTGGCTGGCC--CCTCCAGCT---GTGCGCAGGGCATCGCCTGGC-GGGGGG----AGC---AAGAATCAC-----CTTCGCCCAGCTCCGTCCTGCGCG--CA--GCTG-CGGCTGGAATAGAG-GGAG--CCGGGC-CCGCACCGCAAGG----TCGGTGG----------------GTCAGAACTGGGGTC----------GGGGCGCCAGCCT-CCCCTGGCTGCTCCAGAACCTGTAGTAAGCG-------------GGGC-GGGCGGAG---G--AGCCGTGCAGCAGC-GGTCAGTCCGTGCGGCGCGTTCCGCGGTACCTAGAGCGTCCGGGGCAGCATCCACACAGGGACCGTCTGCACGGGCTGCCTTTACT-GAAATGA-GGAGAGCACAGTTAGTCCT-GGGCG--CTAGCA-ACAGCGCAAGGCCGGGAGCGGGG-AAACTG-------AGGCACCGCAA-------CTGCCCAG----GGCGTC---GGGCGCG--T-CC----------------------CCAGCGGCAGAGCTTGCGCCCAAGCAAGGCCAGCGAGGAAG----CCGCGC-C-ACCGTG-TCTACT-GTCCGGAGT-GAAAACACGTCCCTATTTTTAAAGG-----AAAAAAA--ATCCTGTTT-------------TTTTTTTTCCTCCAAAAATACCTTTTCCTCACAAAGCCACAGTTTGGGTCCATGTC--T-TAAAAGCCGTATTATTTTTTGCAGTATTCATGCCAACAA----------AACAATAATACATG---- i aotNan1.NW_018500483v1 I 15 I 83 s otoGar3.GL873542 22142537 1112 + 22939663 -ATGGAGAAGGGTC-CAGAGCATGCAAGGACACGGATGCACAAGCACGC-------ATACCGA-------------GCCTGGCCCTG---CCTCTGTGC--CGTCG-CTCCCAGGGCCAGCACTGGCCAATTGCATGCACAG--------------GCC--AGAGGCCGCC----------------------A-CA--------CAGCCCTCACAGCACCAC--------TGCAC-------TTATGTTGCTGGGAGGGAG----------------------------AG--ATCCCCAGAGAAAGCAGG--------------AAGACAGGC---------ACCTTCTCAAGCCGACAACCAGGTGGGCAGAGCAGAGAAGGTG--TA-GT-------------CAGGGCGCAGG----CAGGGTCT-------------------------------GGCTGCACAA-----------------------------------------------------------------------------------------------GCAGCTTC-CCACCATCCC-----------------------GCTCCAG-CCTGCCCC----------------------------ATGCTGGGCCTAT-AAATGGGCAGGGGCAGCCACAGGCCT-TGGCTCTCTGGAGTGTCTGTCGTGTCAGGAC---------------------------AGAGCTGCTTCCTGTGGGTGAGGCAGCCGGCA----------------AGGTATGCAGGAGAGATGCCAGTG-AC-C-AGCCTGAAGGA-AATGCCCCT--GA-GAGCAGTCAGGG-GCCCAGGAGGTGCAGACACCTTGCTGGGCTCAGAG---CCCTGGCCAGCT--GCCCT-GCA---GGGCACATGACCT-------------------------------CAC-----CTCTGCCCAGCT-TGCCCTACACT--TAGGGCCA-CAGTGAGACCAACG-GGCA--CCAGGC-CC-TACTGCAAGG----GGCTTGGGGAGGCCAAGCTGCCAGTCAGAAT--GGGCT----------GGAGCGCCAGCCTCCTCATA---TCCCCAGAACCTCTGATAAGCA-------------GGCAGG---CGAG---G--GGCCGTGCAGCAGG-GGCCAGTCCGTGCGGCGCGTTCCATGGTACCTAGAGCGTCCAGGGCAGCATCCACACGGGGACCCTCTGCACGGTCTGCCTTTACTGCAAATGA-GGAGAGCACAGTTAGTCCT-GGG----------------GCGTGACCAGGGAGCGGA-TAACTG-------AGGCATGGCA---------CACCTTGGAGTGGCTCC---AGGCTCACGG-TC----------------------CTGGCCACCAAGTTTGTCTCCAAGCAAGGACAGTGGGGAAG----GTGCCC-C-AAAGTTGTCCATG-GCCTGGAAAAGAAAATAGTTCCCTATTTTAGGAGG-------AGAAAAGCCCCTG----------------GTTTTTCTCCTCCAAAAATATATTTTCCTTCCAAAAGCACAGCTTGGGCTTGTGTC--T-TAAAAGATGTATTATTTTTTGCTATTTTCATGCCAACCA----------AAAAATAATACA--CA-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181091538 1093 + 182113224 -GTGGAGAAGGACA-TGGAGCATGCACAGGTGCAAATGCAC-AGCATGC-------TGC-------------------TCGGCACG---------------------------------------GCTGGACACATGCACAT--------------GAT--GGGGGCACCC--------CC-ATGCGGGGGCCACCA--------CCGCTGCCTGAACAGGGC--------TGGGT-------TGTTCCAGCCGGGAAAGGGACAGGCATGGGAGGGCAACCAGGAGGCAGG--GGCCCCAGAGCAAGCAGGA-------------CAGATGCCTTCATACATGGAC------AACAGACAG--GGGA---ATGGAAAGGGAAGG--------------------------GTGTAG------------T-------------------------------CAAGGTGCAAA-------------G--------------------------------------------------------------------------GGGTTAGGAGGCCTTTCAGCATCCT-----------------------GTTTCCAGTCTTCCCT----------------------------AAACCAGGCCTGCAAGTCAGA-AGGGGGAGACAT-GGCCTTTGGCTTTTGGGGG-----------------CCCTGAAGAGCCCAGAACAC-----A-GCGGGCTGCCTCCCTTAG-TGAGGTGCCGGCTAAGGGTCGGTCCTT----AATGCCTAGTAGAGGTACCAGAGTGGCC-GGCCCCAGAGGAAATGTTTCCTGAA-GGATATT-------------------GGAC-TGTTTCTATATTAGTAA---CCCTGGCCAGCCAGCCCCCTGCTCTGGCAGGAGGGGCTCCATCTAGA-GTCAGA----GGCCAGG----------------CACCCAGCTCTGCCCTGTGTT--TA--G----------GCATCAAG-GGA--------------------------------------------------CTCGGAGCTGGG-------------GGGGCACTGTGCC------GGCTCATCCTGAACCTCTAGTAAGCA-------------GGGA-GGGCAGGA---G-----CGTGCAGC-GT-GGTCAGTCCGTGCGA-GCATTGCGTGGTACCTAGAGTGTCCGGGGCAGCATCCACACAGGCACCCTCGGCACGGTCTGCCTTTACTGGAAATGA-GGAGAGTATAGTTAGTCCT-GGGGG--CGGGTG-ACAGGACCGGAACAGAGAGCAGG-TAACTG-------AGGCACTGTGA-------CCACCTAG----GGAGTTCAGGCTCACA-GTCCC----------------------CCAGCCACAGTGTTTGTGTCTGAGCAGGGACAGCAAGAAAGGGGAGCGCGC-A-AAAGTCTTCTGCT-GCCTGGGAAAGAAAACGGTTCTCTATTTTTGGAGA-------AAAAGGATCCCTG---------T--G------TTTTTCCTCCAAAAATACCCTTTCCTTCCAAAGCCAGAGTGTGGGTTCATGTT--T-TAAGAGATGTATTATTTTTTGCTATACACATGCCAACAAAAATAATAATAATAATAACACA------ i mm10.chr2 I 5 C 0 s canFam3.chr24 47070107 1288 + 47698779 ------CCGGGGCCTCAGAGCATGCACAGATGCAGGTGTCCAAGCATGC-------CGCTGCC---------------CCGGGCC-------------------------CCTGGTCCTGCGGC-ACAGCCCCCATGCCCGCCGCTCGGCCCCACTGCC--TCCGGG-GCCTGCAGCAACC-ACATGCACAGGA-CAGGCGGGCGCAGCTGCCCACACGCTGCACCGGTCGGGGAG-------GGAGGCAGGCGGGAGGGAGACGGGGCGGGGG----------------GG--GAGCCCAGAGCAAGCAAGAGGACAGACGCTTCCACACACCC---------GAC------AGCAGACAG--TGGACGGAGAGA---GTGAGG--------------------------GTGCGGA---CAGGGAGCC-------------------------------CACGGTGCAAAGGGCCGGGGTGGGG--------------------------------------------------------------------------GGG---ACGGCTTTTCCACCGTCCC-----------------------GTTTCCAGTCCGCCCT----------------------------AAACCAGGCCTGT-GGTGGGA-AGGGGGAGCCGAGGGCCCCTGGCTTTCTGGCGTGTCTGGTGTGTCAGGACCACGGGGAGCCCGGCACACACAGGA-CGGAGCTGCCTCCCGCGGGCGAGGCGGCCGGTTCGGAGGGGCCGACCTCGGGTGCGTAGTAGAGGTGCTAGATTGG-CGAGCCCCAGAGG-AAAGGTCAGCGGA-GAGCGAC--AGGACCCCAGA--------------------------AG--CCCCTGGCCGGCCCCCCTCCTGCT---TGGAGCAGGGCATCGTTTGGC-TTGGGG----AC----AAGAGATGTTGGTGCTGCCACCACCGTCACCGT-CACC--GG--GAGGTCGTTTGGAATCACG-GGGGGCCTGGTG-CTCCGCTGCAAGGGGCCGCGGAGG-----CCGAGCTGCCAATCAGAATTGGGGCCTGGGGGCCGGGGGGCGCCAGCCTCGCCCTCGCTCATCTAGAACCTCTAATAAGCAGAGTATTTGGAGCGGGAGGGGAGGTG---GAGAGCCGTGCAGCAAT-GGTCGGTCCGTGCGACACGCCCCGCGGTACCTAGAGTGTCCAGGGCAGCATCCACACAGGGACTCTCTGCACGGTCTGCCTTTACTGGAAATGA-GGAGAGCAGAGTTAGTCCT-GGGCGCACCGGCAGACGGGACGCGACCAGAggggccg-gggccgggcgggcgggcggcACAAAGCAGGCCCACCCTGAGGCAGCTCT---GGGCTCA-GG-GT----------------------CGGCCAGCAGCGCTTGGGTCTGAGCAACGGCAGTGAGGGGG----CTGCAC-AGAAAGTCTTCCGCCGGCCTGGAAAAGAAAACAGTGCCCTATTTTTGGAGAAAAAAAAAAAAAAATCCC-----------G--T---TTTTTTTTCCTCCAAAAATACCTTTTCCTTCCAGAGTCAGAGTTTTGGGCCATGTCTTT-TTAAAGATGTATTATTTTTTGCGATATTCATGCCAACAA----------AAAAATAATACA--TG-- i canFam3.chr24 I 1 C 0 s dasNov3.JH567899 86587 1427 + 555560 ACCGGAGGTAGTTC-CGGAGCATGCACAGG-GCCGTTGCGCAAGCATGCCGCCGAGAGCCCCGGCGCCGCTGCACGGCCCCACCCCATGCCCACTGCACGGCACCGTCACTCAGGGCTAGCACC----GACCACATGCACAC--------------ATTGGAAGGGGAGCT--------CTGGCCTGGGGTGGA-GG--------CAGCAGCCTGACGCTTCC--------AGGGTCCACCCGTAGGATGGGAGGGTGGGGG----------------------------GGCAGCGTCTGGAGCAAGCAGG-GGACAGACATTTTCACACACCC---------GAT------GGCAGACAA--TGGGCGAGAGGAGACAAGGTGTGGTCGGGTGGGGTCCAGAGCCCAGGGTGCAGAGGACCAGGGGGCGGAGGCTTTCCCACACCCTGACTGCGATCTGCACGGTGCGGG-------------GAGGCTTTCCCACACCGCTGGCAGTCTGCACCGGGCAGGGAGGCTTTCCCACACCGCTGGCAGTCTACACGGCACGGG---GAGGCTTTCCCACACCGCTGGCAGTCTGCACGGCACGGGGAGGCTTTCC-CATGCCCTGTTTGTGGTCTGCATGGGGCAGGAGGGTAAACCAGGCCTGT--GCTTCC-AGGGGGAGTGGCGGGCTTGTGGCTCTGAGGGTCTCCGAGTGTGACAGGATCCAG-GGAGCCCGGCACACGCA-GAGCGGAGCTGCCACCCCTGGGAACAATGACA------------------------GCGTAATAGAGGTGCTAGACTGA-C-GAGCCCGGGAG-GACGGTCCCTGGACGGGCAACCAGGG---CACAGAGGCAGGCGCCCCTT-TTGGGTTCTCAGCACCCCGGGCTGGCC--CCC---GCC---TCACACGGGATGTCCTTGGGCTGCAGGGCATCGGCTCTGTGGCCATC-----CTTGCCCTGGCCCCGTCCTGCACAACCA--GGACACCTTTGGAATTGGGTGGAG--CTGAGCACTCCGCCGCAAGG------GACCA----------------ATCGGAATTGGCGTGTGGGG-----GAAGCGCCAGCCTCTCCCAGAC-CATCTAGAACCTCTAGTAAGCA--GAGTCTGGAGCGGGGAGGGCGGAGAACG--AGCCGTGCAGCAGTGGGGCGGTCCGTGC-ACGCGTTCCACGGTACCTAGAGTGTCCGGGGCAGCATCCACACAGGGACTCTCTGCACGCTCTGCCTTTACTGGAAATGAGGGAGAGCACAGTTAGTCCCAAGGCA--CCGGCG-----------------GGCAGGGTAAACAG-------AGGCATCAAAG-------CCCCTGCC----GGCCCG---ATCTGCA-GC-CCCGTGGTCCTAAGCTCATGCCCACCAGCCACAGAATTTGGATCTGACT--GTCCTGAGAAG-GG----CTTCACGT-AAAGTC-TGTGCCAGGCTGGAAAGGAAAAGAGCCCTGCGTTTTTGGAGG-----AAAGAACAAT--------------T--C---CCTGTTTTCCTCCAAAAATACCTTTTCCTTCCAAAGCCAGCATTGCAGTTCATATC--TGTAAAAGATGTATTA-TTTTTGCTTTATTCATGCCAACAAA---------AAAAATAATACA--TAGG i dasNov3.JH567899 C 0 C 0 a score=211275.000000 s hg38.chr20_KI270871v1_alt 5277 23 + 58661 TGGCCTCAGACGCCGCAGAAGCC s panTro5.chr20 65575060 23 + 66533130 TGGCCTCAGACGCCGCAGAAGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344310 23 + 62195757 TGGCCTCAGACGCCGCAGAAGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 754931 23 - 1017659 TGGCCTCAGACGCCGCAGAAGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245571 23 - 110113093 TGGCCTCAGACGCCGCAGAAGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964559 23 - 92844088 TGGCCTCAGACGCTGCAGAAGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612109 23 + 96509753 TGGCCTCAGATGCTGCAGAAGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16067563 23 - 16982598 TGGCCTCAGACGCTACAGAAGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2910907 23 - 3785965 TGGCCTCAGATGCCGCAGAAGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583256 23 - 90373283 TGGCCTCAGACGCCGCAGAAGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458042 23 + 6149316 TGGCCTCAGACGCCGCAGAAGCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691144 23 - 5823884 TGGCCTCAGACGTTGCAGAAGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397590 23 + 159171411 TGGCCTCAGGTGTTGCAGAAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519005 23 + 16356641 GGGCCTCAGGCGCTGCAGAAGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365578 22 + 1231380 CGGCCTCAGG-GCTGCAGAAGGC i cebCap1.NW_016107870v1 C 0 I 13 s otoGar3.GL873542 22143649 21 + 22939663 --GGGAAAGACTTTGCAAAGGCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092631 23 + 182113224 TGAACCAAGATGCTACAGGAGGC i mm10.chr2 C 0 C 0 s canFam3.chr24 47071395 19 + 47698779 -GGC--AAGACTTTGCAAAGGC- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88014 19 + 555560 ----TGAAGACTTTGCAAGAAAC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1927877 83 + 11732439 I a score=87942.000000 s hg38.chr20_KI270871v1_alt 5300 18 + 58661 CTGCTTGG--GAAGGACGTG s panTro5.chr20 65575083 18 + 66533130 CTGCTTGG--GAAGGACGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344333 18 + 62195757 CTGCTTGG--GAAGGACGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 754954 18 - 1017659 CTGCTTGG--GAAGGACGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245594 18 - 110113093 CTGCTTGG--GAAGGACGTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964582 18 - 92844088 CCGCTCGG--GATGGACGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612132 18 + 96509753 CCGCTCAG--GATGGACGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16067586 18 - 16982598 CCGCTCGG--GATGGACGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2910930 18 - 3785965 CCGCTCAG--GATGGACGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583279 18 - 90373283 CCGCTCGG--GATGGACGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458065 18 + 6149316 CCGCTCGG--GATGGACGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691167 18 - 5823884 CCGCTCGG--GATGGACGTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397613 17 + 159171411 --GCGTGGGTGGGGGCTCG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519028 14 + 16356641 --GC-TGG--GAGGGACGG- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22143670 18 + 22939663 TGGATCTG--GATGAACACA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092654 18 + 182113224 CAGATGTG--GGTGGAAATA i mm10.chr2 C 0 C 0 s canFam3.chr24 47071414 18 + 47698779 TTATTCTA--GGTGGACAGG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88033 18 + 555560 TCATGACA--GGTGGCCATG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1927877 83 + 11732439 I e cebCap1.NW_016107870v1 365600 13 + 1231380 I a score=131516.000000 s hg38.chr20_KI270871v1_alt 5318 30 + 58661 ---------ACCC--------CGGGAAAGGGCGTGGGTGTGAAGCAC s panTro5.chr20 65575101 30 + 66533130 ---------ACCC--------CGGGAAAGGGCGGGGGAGTGAAGCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344351 30 + 62195757 ---------ACCC--------CGGGAAAGGGCGGGGGAGTGAAGCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 754972 30 - 1017659 ---------ACCC--------CGGGAAAGGGCGTGGGTGTGAAGCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245612 30 - 110113093 ---------ACCC--------CGGGAAAGGGCGTGGGTATGAAGCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964600 30 - 92844088 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAGCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612150 30 + 96509753 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16067604 30 - 16982598 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAGCAC i macNem1.NW_012014244v1 C 0 I 309 s cerAty1.NW_012001373v1 2910948 30 - 3785965 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAGCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583297 27 - 90373283 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAG--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458083 30 + 6149316 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAGCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691185 27 - 5823884 ---------ATCC--------CAGGAAAGGGTGTGGGTGGGAAG--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397630 26 + 159171411 ---------GTCC--------CTGGAAGGGGCGGGG----TAAGCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519042 26 + 16356641 ---------GTCC--------CGGGAAGGGGCGGGG----TGAGCGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365613 24 + 1231380 ---------AGCC--------CGGGAAGAGGCGGGG----TAAG--C i cebCap1.NW_016107870v1 I 13 C 0 s otoGar3.GL873542 22143688 19 + 22939663 ---------ATTC--------CAGGCAATAAAATGA----------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092672 27 + 182113224 -----------GT--------CTGGAAGGTG-ACCACTGCGAAGCAT i mm10.chr2 C 0 C 0 s canFam3.chr24 47071432 12 + 47698779 ---------GTTC--------CGGAAAGC------------------ i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88051 47 + 555560 ATTTCTGACAGCCAGGGTGGACGGAAAGATAATTTGGTGAAGAGCAT i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1927877 83 + 11732439 I a score=3558.000000 s hg38.chr20_KI270871v1_alt 5348 1 + 58661 A s panTro5.chr20 65575131 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344381 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755002 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245642 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964630 1 - 92844088 A i rheMac8.chr10 C 0 I 308 s macFas5.chr10 95612180 1 + 96509753 A i macFas5.chr10 C 0 I 307 s cerAty1.NW_012001373v1 2910978 1 - 3785965 A i cerAty1.NW_012001373v1 C 0 I 311 s manLeu1.NW_012104365v1 5458113 1 + 6149316 A i manLeu1.NW_012104365v1 C 0 I 303 s calJac3.chr5 57397656 1 + 159171411 A i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519068 1 + 16356641 G i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365637 1 + 1231380 G i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22143707 1 + 22939663 G i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092699 1 + 182113224 G i mm10.chr2 C 0 C 0 s canFam3.chr24 47071444 1 + 47698779 A i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88098 1 + 555560 G i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1927877 83 + 11732439 I e colAng1.NW_012114444v1 4691212 0 - 5823884 C e chlSab2.chr2 89583324 0 - 90373283 C e macNem1.NW_012014244v1 16067634 309 - 16982598 I a score=190727.000000 s hg38.chr20_KI270871v1_alt 5349 21 + 58661 CACATTTGAGAGA---GGAAA-ACG- s panTro5.chr20 65575132 21 + 66533130 CACATTTTAGAGA---GGAAA-ACG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344382 21 + 62195757 CACATTTTAGAGA---GGAAA-ACG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755003 21 - 1017659 CACATTTTAGAGA---GGAAA-ACG- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245643 21 - 110113093 CACATTTTAGGGA---GGAAA-ACG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964939 21 - 92844088 CACATTTTAGGGA---GAAAA-ACG- i rheMac8.chr10 I 308 C 0 s macFas5.chr10 95612488 21 + 96509753 CACATTTTAGGGA---GAAAA-ACG- i macFas5.chr10 I 307 C 0 s macNem1.NW_012014244v1 16067943 21 - 16982598 CACATTTTAGGGA---GAAAA-ACG- i macNem1.NW_012014244v1 I 309 C 0 s cerAty1.NW_012001373v1 2911290 21 - 3785965 CACATTTTAGGGA---GAAAA-ACG- i cerAty1.NW_012001373v1 I 311 C 0 s chlSab2.chr2 89583324 21 - 90373283 CACATTTTAGGGA---GGAAA-ACG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458417 21 + 6149316 CACATTTTAGGGA---GAAAA-ACA- i manLeu1.NW_012104365v1 I 303 C 0 s colAng1.NW_012114444v1 4691212 21 - 5823884 CACATTTTAGGGA---GGAAA-ACG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397657 19 + 159171411 CGCATCT--GAGA---GGAAA-GTG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519069 21 + 16356641 CACATCTTAGGGA---GGAAG-GGG- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365638 21 + 1231380 CGCATCTGAGGGA---GGAAA-GTG- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22143708 19 + 22939663 CACATTGCTGGGA---AACCA-G--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092700 24 + 182113224 CGCCTTTTAGGGAGGGGGAAA-ATG- i mm10.chr2 C 0 C 0 s canFam3.chr24 47071445 22 + 47698779 CACATCTCGGGGA---GGAAACACG- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88099 21 + 555560 -TTATTTCAGGGA---GGAAA-AACA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1927877 83 + 11732439 I a score=264314.000000 s hg38.chr20_KI270871v1_alt 5370 24 + 58661 TGCAGTTGTCCCGCTTTGCAAACC s panTro5.chr20 65575153 24 + 66533130 TGCAGTTGTCCCGCTTTGCAAACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344403 24 + 62195757 TGCAGTTGTCCCGCTTTGCAAACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755024 24 - 1017659 TGCAGTTGTCCTGCTTTGCAAACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245664 24 - 110113093 TGCAGCTGTCCCGCTTTGCAAACT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964960 24 - 92844088 TGCAGCTGTCCCACTTCGCAAACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612509 24 + 96509753 TGCAGCTGTCCCACTTCGCAAACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16067964 24 - 16982598 TGCAGCTGTCCCGCTTCGCAAACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911311 24 - 3785965 TGCAGCTGTCCCGCTTCGCAAACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583345 24 - 90373283 TGCAGCTGTCCCGCTTCACAAACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458438 24 + 6149316 TGCAGCTGTCCCGCTTCGCAAACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691233 24 - 5823884 TCCAGCCGTCCCACTCCGCAAACT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397676 24 + 159171411 TGCACTTGTCCCGCTTTGCAAACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519090 23 + 16356641 GGCA-GTGTCCCGCTTTGCAAACC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365659 24 + 1231380 GGCAGTTGTCCCGCCTTGCAGACC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1927960 24 + 11732439 TGCAGTTGTCCCGCTTTGCAAACC i aotNan1.NW_018500483v1 I 83 I 18 s otoGar3.GL873542 22143727 21 + 22939663 TGCAGTTGG---GCTTTGCAGACT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092724 21 + 182113224 TGCAGTT---TAGCTTTACAAACC i mm10.chr2 C 0 I 7 s canFam3.chr24 47071467 21 + 47698779 TGCA---CTCTGGCGTCACAGACC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88120 21 + 555560 TGCAGTTTT---GCCTTACAAACC i dasNov3.JH567899 C 0 C 0 a score=126301.000000 s hg38.chr20_KI270871v1_alt 5394 20 + 58661 AATCGGCGACGTTTGGCCAT s panTro5.chr20 65575177 20 + 66533130 AGTCGGCGACGTTTGGCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344427 20 + 62195757 AGTCGGTGACGTTTGGCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755048 20 - 1017659 AATCGGCGACGTTTGGCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245688 20 - 110113093 AATCGGCGATATTTGGCCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91964984 20 - 92844088 AATCAGTGACGTTTGGCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612533 20 + 96509753 AATCAGTGACGTTTGGCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16067988 20 - 16982598 AATCAGTGACGTTTGGCCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911335 20 - 3785965 AATCAGCGACGTTTGGCCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583369 20 - 90373283 AATCCGCGACGTTTGGCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458462 20 + 6149316 AATCAGCGACGTTTGGCCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691257 20 - 5823884 GATCGGCGACGTCTGGCCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397700 16 + 159171411 AGTCAGCGCTGCT--AC--C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519113 18 + 16356641 GCTAGGCGAGGCT--GTCGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365683 18 + 1231380 CCTTGGTGACACT--GCCCT i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22143748 19 + 22939663 -GTCAACAGGGCCCTGCCAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092752 20 + 182113224 AAGCGGCGAGGGTTTGCCAC i mm10.chr2 I 7 C 0 s canFam3.chr24 47071488 20 + 47698779 GACCACCGAGGCTGCGCCAA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88141 20 + 555560 AACTGACGGAACTTCGCCAT i dasNov3.JH567899 C 0 I 3 e aotNan1.NW_018500483v1 1927984 18 + 11732439 I a score=368043.000000 s hg38.chr20_KI270871v1_alt 5414 36 + 58661 GCCAGCCAGTCCCCCAGTTGGA-GGTGGGTCTCGGTT s panTro5.chr20 65575197 36 + 66533130 GCCAGCCAGTCCCCCAGTTGGA-GGTGGGTCTCGGTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344447 36 + 62195757 GCCAGCCAGTCCCCCAGTTGGA-GGTGGGTCTCGGTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755068 36 - 1017659 GCCAGCCAGTCCCCCAGTTGGA-GGTGGGTCTTGGTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245708 36 - 110113093 GCCAGCCAGTCCCCCAGTTGGA-GGTAGGTCTCGGTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965004 36 - 92844088 GCCAGCCAGGCCCCCAGCTGGA-GGTGGGTCTCGGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612553 36 + 96509753 GCCAGCCAGGCCCCCAGCTGGA-GGTGGGTCTCGGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068008 36 - 16982598 GCCAGCCAGGCCCCCAGCTGGA-GGTGGGTCTCGGGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911355 36 - 3785965 GCCAGCCAGGCCCCCAGCTGGA-GGTGGGTCTCGGGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583389 36 - 90373283 GCCAGCCAGGCCCCCAGCTGGA-GTTGTGTCTCGGGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458482 36 + 6149316 GCCAGCCAGGCCCCCAGCTGGA-GGTGGGTCTCGGGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691277 35 - 5823884 GCCAGCCAGG-CCCCAGTTGGA-GGCGGGTCTCGGGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397716 36 + 159171411 ACCACCCAGTTCCCCAGCTAGA-GGCGGGTCTCTGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519131 36 + 16356641 GCCCGCCAGGCCCCCAGCTGGA-GGCGGATCTCGGTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365701 36 + 1231380 GCCAGCCAGGCCCCCAGCCGGA-GGCGCGTCTCGGTT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1928002 36 + 11732439 GCCAGCCAGTCCCCCAGCTGGA-GGCGGGTCTCGGTT i aotNan1.NW_018500483v1 I 18 I 107 s otoGar3.GL873542 22143767 33 + 22939663 GCC-GCTGGTTCCCC--TAAGA-AGTAGGCCGTGGTT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092772 35 + 182113224 ACCAGCCTGTGATCT-GTCAGT-AGTGGGCTTTGATT i mm10.chr2 C 0 C 0 s canFam3.chr24 47071508 31 + 47698779 GGCCGCCAGCTGCCCATCCG------AGGCCTCGGTG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88164 37 + 555560 ACCAGCTGGCCACACAATTGGAGGGGGGGCCTCGCTT i dasNov3.JH567899 I 3 C 0 a score=549580.000000 s hg38.chr20_KI270871v1_alt 5450 111 + 58661 TACCCAGGAGGC-GTGGCTGCCACT-GCAGGCATG--GCT------------ATCT-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ACAG---------------TCACGTT----GGGGCTCAGTG------GATCCCCTCATTGTGAA----GCCCTTCA s panTro5.chr20 65575233 110 + 66533130 TACCCAGGAGGC-GTGGCTGCCACT-GCAGGCATG--GCT------------ATCT-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ACAG---------------TCACGTT----GGGGCTCAGTG------GATCCCCTCATT-TGAA----GCCCTTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344483 110 + 62195757 TACCCAGGAGGC-GTGGCTGCCACT-GCAGGCATG--GCT------------ATCT-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ACAG---------------TCACGTT----GGGGCTCAGTG------GATCCCCTCATT-TGAA----GCCCTTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755104 110 - 1017659 TACCCAGGAGGC-ATGGCTGCCACT-GCAGGCATG--GCT------------ATCT-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ACAG---------------TCACATT----GGGGCTCAGTG------GATCCCCTCATT-TGAA----GCCCTTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245744 111 - 110113093 TACCCAGGAGGC-GTGGCTGCCACT-GCAGGCGTG--GCT------------GTCT-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ACAG---------------TCACATC----GGGGCTCAGTG------GATCCCCTCATTGTGAA----GCCCTTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965040 111 - 92844088 TACTCAGGAGGT-GTGGCTGCCGCT-GCAGGCGTG--GCT------------ACCC-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACGTC----GGGGCTCGGTG------GATCCCCTCAGTGCAAA----GCCCTTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612589 111 + 96509753 TACTCAGGAGGT-GTGGCTGCCGCT-GCAGGCGTG--GCT------------ACCC-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACGTT----GGGGCTCGGTG------GATCCCCTCAGTGCAAA----GCCCTTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068044 111 - 16982598 TACTCAGGAGGT-GTGGCTGCCGCT-GCAGGCGTG--GCT------------ACCC-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACGTC----GGGGCTCGGTG------GATCCCCTCAGTGCAAA----GCCCTTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911391 111 - 3785965 TACCCAGGAGGT-GTGGCTGCCGCT-GCAGGCGTG--GCT------------ACCC-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACGTC----GGGGCTCGGTG------GATCCCCTCAGTGCAAA----GCCCTTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583425 116 - 90373283 TACCCAGGAGGT-GTGGCTGCCGCT-GCAGGCGTG--GCT------------ACCCGGGGGGGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACATT----GGGGCTCGGTG------GATCCCCTCAGTGCAAA----GCCCTTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458518 111 + 6149316 TACCCAGGAGGT-GTGGCTGCCGCT-GCAGGCGTG--GCT------------ACCC-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACGTC----GGGGCTCGGTG------GATCCCCTCAGTGCAAA----GCCCTTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691312 111 - 5823884 TACCCGGGAGGC-GTGGCTGCTGCT-GCAGGCGTG--GCT------------ACCC-----GGGGGTTCAAGGGCTC-----------------------CC-----------------CTGAG--G--ATAG---------------TCACGTC----GGGGCTCGGTG------GATCCTCTCAGTGCAAA----GCCCTTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397752 75 + 159171411 CACCAGGGAGGC-GTGGCTGCCACT-GCTG-------------------------------GGAAGTGGAGGAGC------------------------------------------------------------------------------TC----AGGGCTCAGTG------GATCCCCTCAG-----A----TGCCTTCC i calJac3.chr5 C 0 I 7 s saiBol1.JH378156 15519167 112 + 16356641 CACCTGGGAGGC-GTAGCTGCCGCT-GCCG-------------------------------GGAAGTGGAGGGGCCC----------GGGGTTCGGGGCACC-----------------CCGAG--G--CCGG---------------CCGCGTC----AGGGCTCAGTG------GATCCCCTCAGCGCGAG----TGCCTTCG i saiBol1.JH378156 C 0 I 7 s cebCap1.NW_016107870v1 365737 122 + 1231380 CACCCGGGAGGC-GTGGCTGCCGCT-GCTG-------------------------------GGAACTGGAGGGGCTCGGGGCACCCGGGGGCTCAAGGCTCC-----------------CTGAG--G--ACGG---------------CCGCATC----AGGGCTCAGTG------GATCCCCTCAGTGCGAA----TGCCTTCA i cebCap1.NW_016107870v1 C 0 I 9 s otoGar3.GL873542 22143800 64 + 22939663 ----CAGTGGGG-ACAACAGCCGCC-ACCTGCA----------------------------GGAGG----GGAGCCC-----------------------CA-----------------CAGGGCTT--GTGG---------------CCACGGG----GGGG------------------------------------------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092807 87 + 182113224 TATTCAGGAGGCAATGGCTGCCCCC-A-------------------------ATTA-----GAAGGAGAAGAGGTTT--------------------------------------------GGG--GACATAG---------------CCATATTTAGAAGGGCTGATCT------GGTACTCCA-------------------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47071539 82 + 47698779 CCCCCGGGAGGCGGCGGCGGCCTCA-GCGG-------------------------------GAGGGA---------------------------------CG-----------------CCGAG--G--ACAG---------------CGGCTCG----CGGGCCCCGGGCGACGCGGACCCCCAAG------------------ i canFam3.chr24 C 0 I 1 s dasNov3.JH567899 88201 160 + 555560 GACCCAGGAGGTAGGGGCTGCCTCTAGCTGGAGGGAAGCTGAGCAGAAGGGAGTTT-----GGGGGCTTGAGGGCAC-----------------------CCAGATTGCAAAGACTTTGCCAAA--G--CCAGCTGCCCCTCTGGAGTTCACCCG----AAATCTCAGTG------AAATACATCAAGAAGCAACGTGCCCT--- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928038 107 + 11732439 I a score=-23809.000000 s hg38.chr20_KI270871v1_alt 5561 4 + 58661 G-GAG-- s panTro5.chr20 65575343 4 + 66533130 C-AAG-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344593 4 + 62195757 C-AAG-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755214 4 - 1017659 C-GAG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245855 5 - 110113093 CGGAG-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965151 4 - 92844088 C-CGG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612700 4 + 96509753 C-CGG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068155 4 - 16982598 C-CGG-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911502 4 - 3785965 C-TGG-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583541 4 - 90373283 C-TGG-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458629 4 + 6149316 C-CGG-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691423 4 - 5823884 C-CGG-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397834 2 + 159171411 C-T---- i calJac3.chr5 I 7 C 0 s saiBol1.JH378156 15519286 2 + 16356641 C-T---- i saiBol1.JH378156 I 7 C 0 s otoGar3.GL873542 22143864 2 + 22939663 ---GG-- i otoGar3.GL873542 C 0 I 5 s mm10.chr2 181092894 4 + 182113224 C-GAG-- i mm10.chr2 C 0 C 0 s canFam3.chr24 47071622 4 + 47698779 C-GAG-- i canFam3.chr24 I 1 C 0 s dasNov3.JH567899 88361 4 + 555560 ---GGGA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928038 107 + 11732439 I e cebCap1.NW_016107870v1 365859 9 + 1231380 I a score=30927.000000 s hg38.chr20_KI270871v1_alt 5565 6 + 58661 CGCAGC s panTro5.chr20 65575347 6 + 66533130 CGCAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344597 6 + 62195757 CGCAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755218 6 - 1017659 CGCAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245860 6 - 110113093 CGCAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965155 6 - 92844088 GGCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612704 6 + 96509753 GGCAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068159 6 - 16982598 GGCAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911506 6 - 3785965 GGCAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583545 6 - 90373283 GGCAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458633 6 + 6149316 GGCAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691427 6 - 5823884 GGCAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397836 6 + 159171411 CACGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519288 6 + 16356641 CACGGT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365868 6 + 1231380 CGCGGT i cebCap1.NW_016107870v1 I 9 C 0 s otoGar3.GL873542 22143871 3 + 22939663 GAC--- i otoGar3.GL873542 I 5 C 0 s mm10.chr2 181092898 6 + 182113224 TCCACC i mm10.chr2 C 0 C 0 s canFam3.chr24 47071626 6 + 47698779 CTCATC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88365 6 + 555560 AGAAGC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928038 107 + 11732439 I a score=615795.000000 s hg38.chr20_KI270871v1_alt 5571 77 + 58661 TCCCCGCC---------------------GGGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACACGGAAC-GTTTTCCCAAGAATCTCCCCAAAAACCCTGGC s panTro5.chr20 65575353 77 + 66533130 TCCCCGCC---------------------GGGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACGCGGAAC-GTTTTCCCAAGAATCTCCCCAAAAACCCTGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344603 77 + 62195757 TCCCCGCC---------------------GGGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACGCGGAAC-GTTTTCCCAAGAATCTCCCCAAAAACCCTGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755224 77 - 1017659 TCCCCGCC---------------------GGGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACGCGGAAC-GTTTTCCCAAGAATCTCCCCAAAAACCCTGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245866 73 - 110113093 TCCCCGCC---------------------GGGGTG-----------------TTAGAAAAG-GCTCAGAAAACGCGGAAC-ATTTTCCCAAGAATCTCCCCAAAAACCCTGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965161 75 - 92844088 -CCCCGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACTTGGCAC-GCTTTCCCAAGAATCTCCCCGAAAGCCCTGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612710 75 + 96509753 -CCCCGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACTTGGCAC-GCTTTCCCAAGAATCTCCCCGAAAGCCCTGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068165 75 - 16982598 -CCCCGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACTTGGCAC-GCTTTCCCAAGAATCTCCCCGAAAGCCCTGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911512 75 - 3785965 -CCCCGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACTTGGCAT-GCTTTCCCAAGAATCTCCCCAAAAGCCCTGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583551 75 - 90373283 -TCCAGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACGTGGCAC-GCTTTCCCAAGAATCTCCCCGAAAGCCCTGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458639 75 + 6149316 -CCCCGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACTTGGCAC-GCTTTCCCAAGAATCTCCCCAAAAGCCCTGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691433 76 - 5823884 TCCCCGCT----------------------GGGCGT-------------TCCTTAGAAAAG-GCTCAGAAAACGTGGAAC-ACTTTCCCAAGAACCTCCCGGAAAGCCCTGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397842 75 + 159171411 TCCCCA-G---------------------AGAGTGT-------------TC-TTAAAAATG-GCTCAGAAAACATGGAAC-ACTTTCCCGAGAATCTCCCCAAAAACCCTGGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519294 64 + 16356641 TCCTCGCT---------------------GGGGTGT-------------TC------------CTTAGAAAAGGCGGAAC-AC--TCCCCAGAATATCCCCAAAAACCCGGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365874 77 + 1231380 TCCCCGCC---------------------GGGGTGC-------------TCCTTAGAAAAG-GCTCAGAAAACATGGAAC-ACTTTCCCGAGAATCTCCCGGAAAGCCCTGGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1928145 77 + 11732439 TCCCCGCC---------------------GGGGTGT-------------TCCTTAGAAAAG-GCTCAGAAAACATGGAAC-ACTTTCCTGAGAATCTCCCCGAAAACCCCGGC i aotNan1.NW_018500483v1 I 107 I 19 s otoGar3.GL873542 22143874 74 + 22939663 GCACCTGT---------------------GGGCTCT-------------TCCTT--GAAAG-GCCCTGCAGGTGTTGGGC-ATGTGCCCAAGAACCTCTCAGAGACCCTTGA- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181092904 86 + 182113224 TTCTTGCC---------------------ATGGTCTGGGCTAACAGAAATCCTTTGCAAAG-TCCCAGAAAATA-GTGAC-CCTTTCTAGGAAATCTCCC--AGACTCTTGA- i mm10.chr2 C 0 C 0 s canFam3.chr24 47071632 51 + 47698779 -----------------------------------------------------TGGGGCGG-GCGCGAGGCCCACG-------CTCCCCGGGAACCTGCCCGA-AGCCCCGAC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88371 100 + 555560 TCTTGGCTGAGCAGAGGATGACCTGCCTAGGTGGGT-------------TCTTCAGAAAAACATTCACCAAATGTTTAACAATTTTCCCAAAAACCTCCCCAGGGACCCTTGA i dasNov3.JH567899 C 0 C 0 a score=401340.000000 s hg38.chr20_KI270871v1_alt 5648 47 + 58661 GATTTAGCTCTGCATCACAATGTGCAA--ATGATTAAGC------------------AAAAAATGAA s panTro5.chr20 65575430 47 + 66533130 GATTTAGCTCTGCATCACAATGTGCAA--ATGATTAAGC------------------AAAAAATGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344680 47 + 62195757 GATTTAGCTCTGCATCACAATGTGCAA--ATGATTAAGC------------------AAAAAATGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755301 47 - 1017659 GATTTAGCTCTGCATCGCAATGTGCAA--ATGATTAAGC------------------AAAAAATGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245939 46 - 110113093 GATGTATCTCTGCATCACAATGTGCAA--ATGA-TAAGC------------------AAAAAATGAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965236 47 - 92844088 GATTTATCTCTGCATCACAGTATGCAA--ATGATTAAGC------------------AGAAAATGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612785 47 + 96509753 GATTTATCTCTGCATCACAGTATGCAA--ATGATTAAGC------------------AGAAAATGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068240 47 - 16982598 GATTTATCTCTGCATCACAGTATGCAA--ATGATTAAGC------------------AGAAAATGAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911587 47 - 3785965 GATTTATCTCTGCATCACAGTATGCAA--ATGATTAAGC------------------AGAAAATGAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583626 47 - 90373283 GATTTATCTCTGCATCACAGTATGCAA--ATGATTAAGC------------------AAAAAATGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458714 47 + 6149316 GATTTATCTCTGCATCACAGTATGCAA--ATGATTAAGC------------------AGAAAATGAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691509 47 - 5823884 GATTTATCTCTGCACCACAATATGCAA--ATGATTAAGC------------------AAAACATGAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397917 47 + 159171411 GGTTTATCTCTGTGTCACAATGTGCAA--ATGTTTAAGC------------------AAGAAATGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519358 47 + 16356641 GGTTCATCTCTGCATCGCAATGTGCAA--ACGTTTGGGC------------------AAGAGATGAA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 365951 47 + 1231380 GGTTTATCTCTGCATCACAATGTGCAA--ATGTTTAGGC------------------AAGAAATGGA i cebCap1.NW_016107870v1 C 0 I 26 s otoGar3.GL873542 22143948 47 + 22939663 GATTCAGCTCTGCATTAGAACGCGCAA--ATTTTAAAGC------------------AAAAATGGAA i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181092990 66 + 182113224 GATTTGT-TTTCCATTAGAACATGAAAGCATGTTTAAGTTAAACAAGAAAAAAAGGAAAAAAAGGAA i mm10.chr2 C 0 I 85 s canFam3.chr24 47071683 33 + 47698779 -GGCGGCCTCCGCAC--------------GTTTCTGAGC------------------A-AAACTGAA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88471 25 + 555560 -------------------GGGTCCAT-----TTTAAAC------------------AAAACGGAAA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928222 19 + 11732439 I a score=96775.000000 s hg38.chr20_KI270871v1_alt 5695 31 + 58661 A-CCAATCACC------------AAGAACT---------CAAGAA----------------------------------------------CTCTTCCT s panTro5.chr20 65575477 31 + 66533130 A-CCAATCACC------------AAGAACT---------CAAGAA----------------------------------------------CCCTTCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344727 31 + 62195757 A-CCAATCACC------------AAGAACT---------CAAGAA----------------------------------------------CCCTTCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755348 31 - 1017659 A-CCAATCACC------------AAGAACT---------CAAGAA----------------------------------------------CCCTTCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109245985 26 - 110113093 A-CCAGTCGCC------------AAGAACT---------CAAGAA---------------------------------------------------CCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965283 33 - 92844088 AGCAAATCACC------------AAGAACG--------ACAAGAA----------------------------------------------CCCTTCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612832 33 + 96509753 AGCAAATCACC------------AAGAACG--------ACAAGAA----------------------------------------------CCCTTCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068287 33 - 16982598 AGCAAATCACC------------AAGAACG--------ACAAGAA----------------------------------------------CCCTTCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911634 33 - 3785965 AGCAAATCACC------------AAGAACG--------ACAAGAA----------------------------------------------CCCCTCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583673 33 - 90373283 AGCAAATCACC------------AAGAACG--------ACAAGAA----------------------------------------------CCCTTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458761 33 + 6149316 AGCAAATCACC------------AAGAACG--------ACAAGAA----------------------------------------------CCCTTCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691556 33 - 5823884 AGCAAATCACC------------ATGAACG--------ACAAGAA----------------------------------------------CCCTTCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397964 31 + 159171411 -AACAACAACC------------AAGAACC--------ACAGGGC----------------------------------------------CCTTTCT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519405 31 + 16356641 -AACAGCCACC------------AAGAACC--------ACAGGGT----------------------------------------------CCTTTCT- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22143997 41 + 22939663 AAGCAGCTACA------------AAAAATCTCTTTCCCTCCAGGT----------------------------------------------CTCTCCCT i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181093141 91 + 182113224 aagaaaccatcttgaccaaaaaaaaaaaag--------aaaagaaaagaaaagaaaagaaaagaaaaagagaaaaagagaaaaTTACAAAACACATCTT i mm10.chr2 I 85 C 0 s canFam3.chr24 47071716 22 + 47698779 -----------------------AACAACA--------CACGAGA----------------------------------------------CCCTTCCG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88496 25 + 555560 --------ACA------------AGTGACT--------ATAAAAA----------------------------------------------TTGTTTCA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928222 19 + 11732439 I e cebCap1.NW_016107870v1 365998 26 + 1231380 I a score=226756.000000 s hg38.chr20_KI270871v1_alt 5726 35 + 58661 TTTCCCCA-----CCCCAGCCACCCCCAACCTCCTTGCCA---- s panTro5.chr20 65575508 35 + 66533130 TTTCCCCA-----CCCCAGCCACCCCCAACCGCTTTGCCA---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344758 35 + 62195757 TTTCCCCA-----CCCCAGCCACCCCCAACCGCTTTGCCA---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755379 35 - 1017659 TTTCCCCA-----CCCCAGCCACCCCCAACCACTTTGCCA---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246011 35 - 110113093 TTTCCCCA-----CCCCAGCCACCCCCACCCGCTTTGCCG---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965316 35 - 92844088 TTTCCCCG-----CCCCAGCCACCCCCACCCGCTTTGCCG---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612865 35 + 96509753 TTTCCCCG-----CCCCAGCCACCCCCACCCGCTTTGCCG---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068320 35 - 16982598 TTTCCCCG-----CCCCAGCCACCCCCACCCGCTTTGCCG---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911667 35 - 3785965 TTTCCCCG-----CCCCAGCCACCCCCACCCGCTTTGCCG---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583706 35 - 90373283 TTTCCCCA-----CCCCAGCCACCCCCACCCACTTTGCCA---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458794 35 + 6149316 TTTCCCCG-----TCCCAGCCACCCCCACCCGCTTTGCCG---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691589 35 - 5823884 TTTCCCCA-----CCCCAGCCACCCCCACCCGCTTTGCCG---- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57397995 34 + 159171411 TTTCCCCA-----CCCCGGCCG-CTCCACGCGCCTTGCAG---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519436 34 + 16356641 TTTCCCCA-----CCCCGGCCG-CTCCACGCGCCTGGCTG---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366024 33 + 1231380 TTTCCCCG------CCCAGCCG-CTCGATGCGCCTTGCAG---- i cebCap1.NW_016107870v1 I 26 C 0 s otoGar3.GL873542 22144038 25 + 22939663 ----GCCA-----CAGCAGCCG-CTCCACCTGCCA--------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181093232 25 + 182113224 -TTTTCCC-----TCCAGGCCTTCCTTCTTC------------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47071738 39 + 47698779 CCTTCCTGG-GGCCTCCCGCCGTCCCCCGCCGTCGCCCTG---- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88521 36 + 555560 --------TTGTCCCCTGGGCGTCACCCTCCACCTTCGCAGTCT i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928222 19 + 11732439 I a score=2218419.000000 s hg38.chr20_KI270871v1_alt 5761 290 + 58661 CTGCTTCCTGA-GACAGCACTTCTCAAACTCGGTGCCCCAGGAACCCCAGCGTGGCGACGG-CATCCACT--CAGA-ACACACAGGCTC-TAGGAAGAAAGCACCCAGCCTCCCGTCTTCCTGCGCACACGTGTGTTTAGACACCG------------ATGTCCC---TGCACGCAC---CCGCAGGCAGCTCTCCGAGC-GG------CGTCACAGACACG--------GCTAGCTCCAG------------------------TCACGGCAGCACTCAGCCGCC--CGGGTAGGCTGAGGGCT-CTGGACCCTTCCCCAAGCCCCACCAGCCTGCAAGACTCCAAGGGCGGGTG s panTro5.chr20 65575543 290 + 66533130 CTGCTTCCTGA-GACAGCACTTCTCAAACTCAGCGCCCCAGGAACCCCAGCGTGGCGACGG-CATCCACT--CAGA-ACCCACAGGCTC-TAGGAAGAAAGCATCCAGCCTCCCGTCTTCCTGCACACACGTGTGTTTAGACACCA------------ACGTCCC---TGCATGCAC---CCGCAGGCAGCTCTCCGAGC-GG------CGTCACAGACACG--------GCTAGCTCCAG------------------------TCACGGCAGCACTCAGCCGCC--CGGGTAGGCTGAGGGCT-CTGGACCCTTCCCCAAGCCCCACCAGCCTGCAAGACTCCAAGGGCGGGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61344793 290 + 62195757 CTGCTTCCTGA-GACAGCACTTCTCAAACTCAGCGCCCCAGGAACCCCAGCGTGGCGACGG-CATCCACT--CAGA-ACCCACAGGCTC-TAGGAAGAAAGCACCCAGCCTCCCGTCTTCCTGCGCACACGTGTGTTTAGACACCG------------ACGTCCC---TGCATGCAC---CCGCAGGCAGCTCTCCGAGC-GG------CGTCACAGACACG--------GCTAGCTCCAG------------------------TCACGGCAGCACTCAGCCGCC--CGGGTAGGCTGAGGGCT-CTGGACCCTTCCCCAAGCCCCACCAGCCTGCGAGACTCCAAGGGCGGGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755414 290 - 1017659 CTGCTTCCTGA-GACAGCACTTCTCAAACTCAGTGCCCCAGGAACCCCAGCGTGGCGACGG-CATCCACT--CAGC-ACACACAGGCTC-TAGGAAGAAAACACCCAGCCACCCGTCTTCCTGCACACACGTGTGTTTAGACACCG------------ACGTCCC---TGCATGCAC---CCGCAGGCAGCTCTCCGAGC-GG------CGTCACAGACACG--------GCTAGCTCCGG------------------------TCACGGCAGCACTCAGCCGCC--CAGGTAGGCTGAGGGCT-CTGGACCCTTCCCCAAGCCCCACTGGGCTGCAAGACTCCAAGGGCGGGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246046 288 - 110113093 CTGCTTCCTGA-GACAGCGCTTCTCCAACTCAGCGCCCCAGGAACCCCAGCATGGCGACGG-CATCCACT--CAGA-ACACACAGGCTC-TAGGAAGAAAGCACCCAGCCTCCCGTCGTCCTGCACACAC--GTGTTTAGACACCG------------ACGTCCC---TGCACGCAC---CCGCAGGCAGCTCTCCGCGA-GG------CGTCACAGACACG--------GCTAGCTCCAG------------------------TCACGGCAGCAATCAGCCGCC--CGGGTAGGCTGAGGGCT-CTGGACCCTTCCCCAAGCCCCACTGGCCTGCAAGACCCCAAGGGCAGGTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965351 288 - 92844088 CTGCTTCCTGA-GACAGCACTTCTCAAACGAGGCGCCCCAGGAACCCCAGCGTGACGACGGCCTTCCACT--CAGA-ACACACAGGCTC-TGGGAAGAAAGTGTCCCGCCTCCTGCCTTCTTGCACACGC--GTGTTTAGACACCA------------GCGTCCC---TGCATAAAC---CCGCTGGCAGCTCTCCACGC-GG------CGTCACGGACACG--------GCTAGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CCGGACCCTTCCGCGAGCCCCACCGGCCTGCAAGACCCCAAGGACGGGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95612900 288 + 96509753 CTGCTTCCTGA-GACAGCACTTCTCAAACGAGGCGCCCCAGGAACCCCAGCGTGACGACGGCCTTCCACT--CAGA-ACACACAGGCTC-TGGGAAGAAAGTGTCCCGCCTCCTGCCTTCTTGCACACGC--GTGTTTAGACACCA------------GCGTCCC---TGCATAAAC---CCGCTGGCAGCTCTCCACGC-AG------CGTCACGGACACG--------GCTAGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CCAGACCCTTCCGCGAGCCCCACCGGCCTGCAAGACCCCAAGGACGGGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068355 288 - 16982598 CTGCTTCCTGA-GACAGCACTTCTCAAACGAGGCGCCCCAGGAACCCCAGCGTGACGACGGCCTTCCACT--CAGA-ACACACAGGCTC-TGGGAAGAAAGTGTCCCGCCTCCTGCCTTCTTGCACACGC--GTGTTTAGACACCA------------GCGTCCC---TGCATAAAC---CCGCTGGCAGCTCTCCACGC-GG------CGTCACGGACACG--------GCTAGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CCGGACCCTTCCGCGAGCCCCACCGGCCTGCAAGACCCCAAGGACGGGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911702 287 - 3785965 CTGCTTCCTGA-GACAGCACTTCTCAAACTAGGCGCCCCAGGAACCCCAGCGTGACGACAG-CTTCCACT--CAGA-ACACACAGGCTC-TGGGAGGAAAGTGTCCCGCCTCCTGCCTTCTTGCACACAC--GTGTTTAGACACCA------------ACGTCCC---TGCATAAAC---CCGCTGGCAGCTCTCCACGC-GG------CGTCACGGACACG--------GCTAGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CTGGACCCTTCCACGAGCCCCACCGGCCTGCAAGACCCCAAGGACGGGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89583741 287 - 90373283 CTGCTTCCTGA-GACAGCACTTCTCAAACTAGGCGTCCCAGGAACCCCAGCGTGACGACGG-CTTCCACT--CAGA-ACACACAGGCTC-TGGGAAGAAAGTGGCCCGCCTCCTGCCTTCTTGCACACGC--GTGTTTAGACACCA------------ACGTCCC---TGCATAAAC---CCGCTGGCAGCTCTCCATGC-GG------CGTCACGGACACG--------GCTGGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CTGGACCCTTCTGCGAGCCCCACCAGCCCGCAAGACCCCAAGGACGGGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5458829 287 + 6149316 CTGCTTCCTGA-GACAGCACTTCTCAAACTAGGCGCCCCAGGAACCCCAGCGTGACGACGG-CTTCCACT--CAGA-ACACACAGGCTC-TGGGAGGAAAGTGTCCCGCCTCCTGCCTTCTTGCACACGC--GTGTTTAGACACCA------------ACGTCCC---TGCATAAAC---CCGCTGGCAGCTCTCCACGC-AG------CGTCACGGACACG--------GCTAGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CTGGACCCTTCCGCGAGCCCCACCGGCCTGCAAGACCCCAAGGACGGGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691624 283 - 5823884 CTGCTTCCTGA-GACAGCACTTCTCAAACTAGGCGCCCCAGGAACCCCAGCGTGACGACGGCCTTCCACT--CAGA-ACGCACAGGCTC-TAGGAAGAAAGG-----GCCTCCTGTCTTCTTGCACACAC--GTGTTTAGACACCA------------ACGTCCC---TGCACAAAC---CCGCTGGCAGCTCTCCACGC-GG------CGTCACAGACACG--------GCTAGCTCCAG------------------------TCATGGCAGCACTCGGCCACC--CGGGTA-GCTGAGGGCT-CTGGACCCTTCCCCGAGCCCCACCGGCCTGCAAGACCCCGAGGACGGGTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398029 282 + 159171411 CTGCTCCCCGA-GACAGCACTTCTCAAACAAGTT---------GGCCCGGCGTGCCAACGG-CGTCTGCT--CAGA-ACACACGGGCTC-CA-GAAGAACGTGCCCAGCC-CCCATCTGCTCGCACACACGTGCGTCTGGACACTG------------GTGCTCCCTGTGCAGGGGC---CCGCCAGCAGCGCTCCACGT-GG------CACCACAGACGCG--------CCTAGGTCTAG------------------------TCACAGCAGCGCTCCGCAGCT--GGGGCAGGCTGAGGGCT-CTGGACCCTTTCCCAAACCCTCCCCCACTGCAAGACCCCAAGGGCGGGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519470 289 + 16356641 CTGCCCCCCGA-GACGGCACTGCTCAAACGAGGTGCCCCAGGAGCCCCGGCATGCCAACGG-CGTCCGCT--CAGG-ACACA--GGCTC-CA-GAGGAACGTGCCCAG---CCGGTCTTCCCGCACACGCGTGCGTCTGGACACCG------------GTGCCCCCTGCCCACGGGCCCGCCGCCGGCAGCGCTCCACGC-GG------CACCACAGCCACG--------CCTAGGTCTAG------------------------TCACGGCAGCGCCCGGCAGCC---CGGCAGCCTGAGGGCT-CTGGACCCTTCCCCAAACCCTGCCAGCCCGCAAGACCCCAAGGGCGGGTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366057 288 + 1231380 CTGCTCCCCGA-GGCAGCGCTTCTCCAACGAGGTGCCCCAAGAACCCCGGCATGCCAACGG-CGTCTGCT--CAGA-ACACACAGGCTC-CA-GAAGAACGTGCCCAGCC-CCCGTCTTCTTGCACACGCGTGCCTCTGGACGCTG------------GTGCTCCCTGCGTCTGG-----CCGCCGACAGCGCTCCACGC-AG------CACCACAGACACG--------CCTAGGTCTAG------------------------TCGCGGCAGCGCTCGGCCGCC---GGGCAGGCTGAGGGCT-CTGGACCCTTCCCCAAACCCTGCTGGCCTGCAAGACCCCAAGGGCGGGTG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1928241 291 + 11732439 CTGCTCCCCGA-GACAGCACGTATCAAACGAGGCGCCCCAGGAACCCCGGCGTGCCAACGG-CGTCCGCT--CGGA-ACACACAGGCTC-CA-GAAGAGCGTGCCCAGCC-CCCGTCTTCTCGCACACGCGCGCGTCTGGACACTC------------GTGCTCCCTGCGCACGGGC---CCGCCGGCAGCGCTCCACGC-GG------CACCACAGACGCG--------CCTAGGTCTAG------------------------TCATGGCAGCGCTCGGCCGCC--CGGGCAGGCTGAGGGCT-CTGGACCCTTCCCCAGACCCTGCCGGCCTGCAAGACCCCACGGGCGGGTG i aotNan1.NW_018500483v1 I 19 I 9 s otoGar3.GL873542 22144063 219 + 22939663 --------------TGGTTCTTCTCAGAC----TGCACCAGGAATGCGGGAGGGCAGCTGG-TCCCCACC-ACAGG-ATG-GCAGGCTC-CA---AGAGAGCGCCCGGCATCCCACTCTCCTCCGCAATT--TGACGTATACACTG------------GTGCTCC---------CCA---CTGCAAGCGACTCTTCCCTTAGG------CATAAAAGACACACTT-----GCTAATTCTG--------------------------TAAAAGAGCA-TCTGCCATC--CAGACA----------------ACC----------CCCCACCTG--TGCAG----------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181093257 310 + 182113224 CTGCATAGTTATAATAGCACTTCACAAACTTCGTCCCTGAGTAAACCAACATATAGGACCA-TCTCACAT--CAGACACAAACAAGCCC-TAGGAAGAAAGTACCCAGCAGTCCATTTTCCCCATCAAACACTTTTTCAAACACAGCCTCAGTGTTATGTGTCAC---TGACTGCAC---TTGC------CTCCCCATTT-AG------GCACAAAGACACACTGCTCTAACTGGCGTTAACAGAAATCAGAATGGGAACTTGGTTCCAGAGAGCACGCTGCTGAC--CAGACAGGCTAA---TT-CTGAAACTGTTCA---------------TGCAGGACATTGAGCACCCT-- i mm10.chr2 C 0 C 0 s canFam3.chr24 47071777 178 + 47698779 -TG-GCCCCGA-CACGCTGTCTCCT-------GCGGGCCGAGGACGCAGACCCGCCGA----CCCCCGCT--CACG-ACA------------------------CCAGCC--------------------------CTGGGCAGCG------------GCGCCCA---------------GCG--------TCCCCACGC-AC------CGGCACAGGAGGC--------GCCCGCACGAA------------------------CCCCG--------CGGCCACG--TGGGAAGGATACGCTCTGCTGGGCCACCCCCCG---------------------TCCAGGGG------ i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88557 268 + 555560 GTTTCTTCTGA-GACGGCAGCTCTCAAACCACGCAC-CGAGGAGCCTGGGGGCGCCTCATG-TTCTCAATGGCAGG-AAAACCGAGCTTGCGAGAAGATGGGGCTCAGAGACCCG-CTTCCCCTTCACACCTTCACTTAAACGTCG------------GCGGTGC---------------TTGCTGCAAGTGGTCCATGC-AAGACTCTCTCCAATGATACA-------------------------------------------AAAAGGAGACACTTGGCTAACTTCAGCCA--ATGAGCGGC-TGTGCCCCAGCGCTGTGCTCCGCAGGCAGGTGAGAGCCCAG--------- i dasNov3.JH567899 C 0 C 0 a score=272276.000000 s hg38.chr20_KI270871v1_alt 6051 34 + 58661 GCCGGCTTCCACCCCAGCCCCCGTGCCGGTCCGG- s panTro5.chr20 65575833 34 + 66533130 GCCGGCTTCCACCCCAGCCCCCGTGCCGGTCCGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345083 34 + 62195757 GCCGGCTTCCACCCCAGCCTCCGTGCCGGTCCGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755704 34 - 1017659 GCCGGCTTCCACCCCAGCCCCCGTGCCGGTCCGG- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246334 34 - 110113093 GCCGGCTTCCACCCCAGCCCCCGTGCCGGTCCCG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965639 34 - 92844088 ACCAACTTCCACCCCAGCCCCCGTGCCGGTCCCG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613188 34 + 96509753 ACCAACTTCCACCCCAGCCCCCGTGCCGGTCCCG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068643 34 - 16982598 ACCAACTTCCACCCCAGCCCCTGTGCCGGTCCCG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2911989 34 - 3785965 ACCAACTTCCACCCCAGCCCCCGTGCCGGTCCCG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584028 34 - 90373283 GCCAACTTCCACCCCAGCCCCTGTGCCCGTCCCG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459116 34 + 6149316 ACCAACTTCCACCCCAGCCCCCATGCCGGTCCCG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691907 34 - 5823884 GCCGGCTTCCACCCCAGCCCCCGTGCCGGTCCCG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398311 34 + 159171411 GCTGGCTTCCGCCCCAGGCCCTGTGCTGGTCCCA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519759 34 + 16356641 GGTGGCTTCCACCCCAGGCCCTGTGCTGGTCCCA- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366345 34 + 1231380 CCTGGCTTCCGCCCCAGGCCCTGTGCTGGTCCCA- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22144282 27 + 22939663 GGCAGCTTCTGACCAA-------TGGAGAGCCAG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181093567 34 + 182113224 GAGGACTTCTGCCCAAGCATCCACATAGGCTTGG- i mm10.chr2 C 0 I 1 s canFam3.chr24 47071955 21 + 47698779 ------------CCCTTCCTCCCTGCGGGGTCC-- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88825 32 + 555560 --CGCCTTCCGCCCAGGGACGCGC-CTGGCTGCGC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928532 9 + 11732439 I a score=331624.000000 s hg38.chr20_KI270871v1_alt 6085 36 + 58661 CTTTTTAGTACACAAGCGACTTTGGGG--TCCCCAGGC s panTro5.chr20 65575867 36 + 66533130 CTTTTTAGTACACAAGCGACTTTGGGG--TCCCCAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345117 36 + 62195757 CTTTTTAGTACACAAGCGACTTTGGGG--TCCCCAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755738 36 - 1017659 CTTTTTAGTACACAAGCGACTTTGGGG--TCCCCAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246368 36 - 110113093 CTTTTTAGTACACAAGCGACTTTGAGG--TCCCCAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965673 36 - 92844088 CTTTTTAGGTCACAAGCAGCTTTGGGT--TCCCCAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613222 36 + 96509753 CTTTTTAGGTCACAAGCAGCTTTGGGG--TCCCCAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068677 36 - 16982598 CTTTTTAGGTCACAAGCAGCTTTGGGG--TCCCCAGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912023 36 - 3785965 CTTTTTAGGTCACAAGCAGCTTTGGGG--TCCCCAGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584062 36 - 90373283 CTTTTTAGTACACAAGCAGCTTTGGGT--TCCCCAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459150 36 + 6149316 CTTTTTAGGTCACAAGCAGCTTTGGGG--TCCCCAGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691941 36 - 5823884 CTTTTTAGTACACAAGCAGCTTTGGGG--TCCCCAGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398345 36 + 159171411 CTTTTTAGTAGGAAGGCGGCTTCGGGA--TCCCCAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519793 36 + 16356641 CTTTTTAGCACGCAAGCGGCTTCAGGG--TCCCCAGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366379 36 + 1231380 CTTTTTAGTAGGCAAGTGGCTTCGGGG--TCCCCAGGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1928541 36 + 11732439 CTTTTTAGTACGCAAGCGGCTTGAGGG--TCCCCAGGC i aotNan1.NW_018500483v1 I 9 I 133 s otoGar3.GL873542 22144309 14 + 22939663 ------------------GCTCTG-----TTCTCAGG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181093602 36 + 182113224 ATTCTAGGTAGACAAGCAGTTTTGGGC--TTCTCAGAC i mm10.chr2 I 1 C 0 s canFam3.chr24 47071976 8 + 47698779 -----------------------------TCCCCAGG- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88857 37 + 555560 CTGCTAAGCAGACAGGTTCTCCGGGGGCCTCTCCATC- i dasNov3.JH567899 C 0 C 0 a score=293677.000000 s hg38.chr20_KI270871v1_alt 6121 48 + 58661 ACGAAGG-GAT------GTAGTGCAAAGGCTGGACTCT------GTTTGCTGGTTAACCAC s panTro5.chr20 65575903 48 + 66533130 ACGAAGG-GAT------GTAGCGCAAAGGCTGGACTCT------GTTTGCTGGTTAACCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345153 48 + 62195757 ACGAAGG-GAT------GTAGCGCAAAGGCTGGACTCT------GTTTGCTGGTTAACCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755774 47 - 1017659 AC-AAGG-GAT------GCAGCGCAAAGGCTGGACTCT------GTTTGCGGGTTAACCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246404 48 - 110113093 ACTAAGG-GAT------GTAGCGCAAAGGCTGGACTCT------GTTTGCTAGTTAACCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965709 47 - 92844088 ACTAAGG-GAT------ATAGCA-AAAGGCCGGACTCT------GTTTGCTGGTTAACCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613258 47 + 96509753 ACTAAGG-GAT------ATAGCA-AAAGGCCGGACTCT------GTTTGCTGGTTAACCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068713 47 - 16982598 ACTAAGG-GAT------ATAGCA-AAAGGCCGGACTCT------GTTTGCTGGTTAACCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912059 47 - 3785965 ACTAAAG-GAT------ATAGCA-AAAGGCCGGACTCT------GTTTGCTGGTTAACCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584098 47 - 90373283 ACTAAGG-GAT------ATAGCA-AAAGGCCAGACTCT------GTTTGCTGGTTAACCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459186 47 + 6149316 ACTAAGG-GAT------ATAGCA-AAAGGCCGGACTCT------GTTTGCTGGTTAACCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4691977 46 - 5823884 ACTAAGG-GAT------GTAGCACAAAGGCCAGA--CT------GTTTGCTGGTTAACCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398381 47 + 159171411 CCTTCAG-GAT------GTGGTGCAAAGGCT-GACTCC------GATTGGTAGTTAACCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15519829 47 + 16356641 CCTTCGG-GAT------GTGGTGCAAAGGCT-GACTCT------GATTGGTAGTTAACCAT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366415 47 + 1231380 CCTTCAG-GAT------GTGGTGCACAGGCT-GACTCC------GATTGGTAGTTAACCAT i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22144323 32 + 22939663 -----------------GTGGGGCAA---CTGACCTCT------GTCTGCTAGCC--CCA- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181093638 49 + 182113224 ACTCTGGAGAT------GTGGAACAAAGGCTGGATGCT------TGCTGCTGACTTACCAC i mm10.chr2 C 0 I 64 s canFam3.chr24 47071984 29 + 47698779 ----AGG-GAC------------------CCGGGCTCC------GGCTGC--ATCGGCAA- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88894 60 + 555560 ACGCGGG-GAATCCCAAGCAGAGGGCAGGCTGGTTTCCTGGCCGATGTGCTAACTGACCAC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928577 133 + 11732439 I a score=230525.000000 s hg38.chr20_KI270871v1_alt 6169 68 + 58661 GAACGCGACGGTGGGACGAGGCAGGAGGGAGCCGGCTCCCTGCGCCTGGCTTGAGGTTCTGGCTGCT--C s panTro5.chr20 65575951 68 + 66533130 GGACGCGATGGCGGGACGGGGCGGGAGGGAGCCGGCTCCCTGCGCCTGGCTTGAGGTTCTGGCTGCT--C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345201 68 + 62195757 GAACGCGACGGCGGGACGGGGCGGGAGGGAGCCGGCTCCCTGCGCCTGGCTTGAGGTTCTGGCTGCT--C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755821 68 - 1017659 GAACGCGACGGCGGAACGGGGCGGGAGGGAGCCGGCTCCCTGCGCCTGGCTTGAGGTTCTGGCTGCT--C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246452 70 - 110113093 GATCGCAACGGCAGGACGGGGCAGGAGGGAGCCAGCTCCCTGTGCCTGGCCTGAGGTTCTGGCTGCTCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965756 42 - 92844088 GAACGCGAGGGCGGGACGG----------------------------GGCCCGAGGTTCTGGCTGCTCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613305 42 + 96509753 GAACGCGAGGGCGGGACGG----------------------------GGCCCGAGGTTCTGGCTGCTCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068760 42 - 16982598 GAACGCGAGGGCAGGACGG----------------------------GGCCCGAGGTTCTGGCTGCTCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912106 42 - 3785965 GAACGCGAGGGCGGGACGG----------------------------GGCCCGAGGTTCTGACTGCTCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584145 42 - 90373283 GAATGCGAGGGCGGGACGG----------------------------GGCCCGAGGTTCTGACTGCTCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459233 42 + 6149316 GAACGCGAGGGCGGGACGG----------------------------GGCCCAAGGTTCTGACTGCTCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692023 42 - 5823884 GAACGGCAGGGCGGGACGG----------------------------GGCCCGAGGTTCTGGCTGCTCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398428 67 + 159171411 GAATGTGAGGGCGGGAGGG-GCGGGAGGGAGCCGGTACCTAGCGCCTGGCCTGAGGCTCTGGCTGCTC-- i calJac3.chr5 C 0 I 3 s saiBol1.JH378156 15519876 67 + 16356641 GAACGTGAGGGCGGGAGGG-GCGGGAGGGAGCCGGCACCTGGCGCCTGGCCTGAGGCTCTGGCTGCTC-- i saiBol1.JH378156 C 0 I 3 s cebCap1.NW_016107870v1 366462 67 + 1231380 GAGCGAGAGGGTGGGAGGG-GCGGGAGGGAGCCGGCACCTAGCGCCTGGCCTGAGGCTCTGGCTGCTC-- i cebCap1.NW_016107870v1 C 0 I 33 s otoGar3.GL873542 22144355 32 + 22939663 ---------GGCAGCGC---------------------------CCTGCCCTAAGGCCCTGGCTGTTC-- i otoGar3.GL873542 C 0 I 2 s canFam3.chr24 47072013 36 + 47698779 GCACGCTCCCGTGGGGACAAGC-------------------------GTCCCTGTGACTTG--------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 88954 55 + 555560 ----------CTGGTCCCAGGCCCAAAGGGGCTGGGGTCCTGCC---GTCCCCAGGAGCGTTCCCCTC-- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181093687 64 + 182113224 I e aotNan1.NW_018500483v1 1928577 133 + 11732439 I a score=108095.000000 s hg38.chr20_KI270871v1_alt 6237 20 + 58661 AGAGTC--TCTC----------CCG----CTGTGAC s panTro5.chr20 65576019 20 + 66533130 AGAGTC--TCTC----------CCG----CTGTGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345269 20 + 62195757 AGAGTC--TCTC----------CCG----CTGTGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755889 20 - 1017659 AGAGTC--TCTC----------CCG----CTGTGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246522 20 - 110113093 AGAGTC--CCTC----------CCT----CTGTGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965798 19 - 92844088 AGAGTC--TCT-----------CCA----CTGTGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613347 19 + 96509753 AGAGTC--TCT-----------CCA----CTGTGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068802 19 - 16982598 AGAGTC--TCT-----------CCA----CTGTGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912148 19 - 3785965 AGAGTC--TCT-----------CCA----CTGTGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584187 19 - 90373283 AGAGTC--TCT-----------CCA----CTGTGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459275 19 + 6149316 AGAGTC--TCT-----------CCA----CTGTGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692065 20 - 5823884 AGAGTC--TCTC----------CCG----CTGTGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398498 20 + 159171411 GAAGCC--TCTC----------CCA----CTGCAGC i calJac3.chr5 I 3 I 10 s saiBol1.JH378156 15519946 20 + 16356641 GAAGCC--TCTC----------CCA----CTGCAGC i saiBol1.JH378156 I 3 I 10 s otoGar3.GL873542 22144389 27 + 22939663 GAAGCC--CCTTGTGGGGGCAGCTG----CTGT--- i otoGar3.GL873542 I 2 C 0 s canFam3.chr24 47072049 18 + 47698779 ---GTA--TCC-----------CCAGGACCTGTG-- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89009 21 + 555560 ACAGCCAACCC-----------TCA----CTGTGGC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181093687 64 + 182113224 I e aotNan1.NW_018500483v1 1928577 133 + 11732439 I e cebCap1.NW_016107870v1 366529 33 + 1231380 I a score=697297.000000 s hg38.chr20_KI270871v1_alt 6257 76 + 58661 -------------------------CACCCCAGCTA---------CGAT---------GACACCCAGGCCTTCCTGGCAGGCAAAGACCTCAGACTCCCACCAGCACCA--------CCCAGGCCCA- s panTro5.chr20 65576039 76 + 66533130 -------------------------CACCCCGGCCA---------CGAT---------GACACCCAGGCCTTCCTGGCAGGCAAAGACCTCAGACTCCCACCAGCACCA--------CCCAGGCCCA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345289 76 + 62195757 -------------------------CACCCCGGCCA---------CGAT---------GACACCCAGGCCTTCCTGGCAGGCAAAGACCTCAGACTCCCACCAGCACCA--------CCCAGGCCCA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755909 74 - 1017659 -------------------------CACCCCAGCCA---------CGAT---------GACACCCAGGCCTTCCTGGCAGGCAAAGACCT--GACTCCCACCAGCACCA--------CCCAGGCCCA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246542 84 - 110113093 -------------------------CACCCCAGCAA---------CGAT---------GACACCCAAGGCTTCCCGGCAGGCCAAGACCTCAGACTCCCACCAGCACCACCAGGGTGCCCAGGCCCA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965817 84 - 92844088 -------------------------CACCGAAGCCA---------CGAT---------GACACCCAAGCCTTCCTGGAAGGCAAAGACCTCAGACTCCCACCAGCGCCACCAGGGTGCCCAGGCCCA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613366 84 + 96509753 -------------------------CACCGAAGCCA---------CGAT---------GACACCCAAGCCTTCCTGGAAGGCAAAGACCTCAGACTCCCACCAGCGCCACCAGGGTGCCCAGGCCCA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068821 84 - 16982598 -------------------------CACCGAAGCCA---------CGAT---------GACACCCAAGCCTTCCTGGAAGGCAAAGACCTCAGACTCCCACCAGCGCCACCAGGGTGCCCAGGCCCA- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912167 84 - 3785965 -------------------------CACCGCAGCCA---------CGAT---------GACACCCAAGCCTTCCTGGCAGGCAAAGACCTTAGACTCCCACCAGCACCACCAGGGTGCCCAGGCCCA- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584206 84 - 90373283 -------------------------CACCGCAACCA---------CGAT---------GGCACCCAAGCCTTCCTGGCAGGCAAAGACCTCAGACTCCCACCAGCACCACCAGGGTGCCCAGGCCCA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459294 84 + 6149316 -------------------------CACCGCAGCCA---------TGAT---------GACACCCAAGCCTTCCTGGCAGGCAAAGACCTTAGACTCCCACCAGCACCACCAGGGTGCCCAGGCCCA- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692085 84 - 5823884 -------------------------CACCGCAGCCA---------CGAT---------GACACCCAAGCCTTCCTGGCAGGCAAAGACCTCAGACTCCCACCAGCACCACCAGGGTGCCCAGGCCCA- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398528 84 + 159171411 -------------------------CACCCCAGTCA---------CAAT---------GGCACCCAAGGCTGCCTGGCAGGCAAAGACCTGAGACTCTCATCAGCACCCCCAGGGTGCCCAGGCCCC- i calJac3.chr5 I 10 C 0 s saiBol1.JH378156 15519976 84 + 16356641 -------------------------CACCCCAGCCA---------CGAT---------GGCACCCAAGCCTGCCTGGCAGGCAATTACCTGAGACTCTCATCAGCACCCCCAGGGCGCCCAGGCCCC- i saiBol1.JH378156 I 10 C 0 s cebCap1.NW_016107870v1 366562 84 + 1231380 -------------------------CACCCCAGCCA---------CAAT---------GGCACCCAAGCCTGCCTGGCAGGCAAAGACCTGAGACTGTCATCAGCACCCCCAGGGTGCCCAAGCCCC- i cebCap1.NW_016107870v1 I 33 C 0 s aotNan1.NW_018500483v1 1928710 84 + 11732439 -------------------------CACCCCGGCCA---------CAAT---------GGCACCCAAGCCTGCCTGGCAGGCAAAGACCTGAGACTCTCATCAGCACCCCCAGGGTGCCCAGGCCGC- i aotNan1.NW_018500483v1 I 133 C 0 s otoGar3.GL873542 22144416 81 + 22939663 -------------------------CATTCAGGGCGGCTCCATGCCAGT---------CCCACCACAGCCTGCCCCTCAG---AAGACCTGAGAATCTCCTCAGGTCT---------CCTAGGCCCA- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47072067 41 + 47698779 ------------------------------------------------------------CACCCA----------GCAG--------CTCTGGCTCCCCCAGGAGCCC--------CTCAAGCCGG- i canFam3.chr24 C 0 I 1 s dasNov3.JH567899 89030 103 + 555560 CCCTGGAAGCAATTTTATGTCCCCTGGACCCGGGCA---------CAGTCACCCTTCAGCCACCAAAGCCGGCCCCACCAGCTCAAAACCCAAGCCCCTTC----------------CCCAGGGCCTC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181093687 64 + 182113224 I a score=1094046.000000 s hg38.chr20_KI270871v1_alt 6333 129 + 58661 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------CCCA-CCCC-AGG-GAAAGAGCATGAAGGAGGCAGGGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCAGCATGATCGCCTT s panTro5.chr20 65576115 129 + 66533130 AGCACAGAGGCCTTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------CCCA-CCCC-AGG-GAAAGAGCATGAAGGAGGCAGGGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCAGCATGATCGCCTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345365 129 + 62195757 AGCACAGAGGCCTTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------CCCA-CCCC-AGG-GAAAGAGCATGAAGGAGGCAGGGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCAGCATGATCGCCTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 755983 128 - 1017659 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT--------------------------------------------------------------------------------------------CCCA-CCCC-AGG-GAAGGAGCATGAAGGAGGCACGGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCAGCATGATCGCCTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246626 214 - 110113093 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTTCCCACCCCAGGGAAGTAGCATGAAGGAGGCAGAGTCCCGCTTCCCCACCCCAGGGAAGGAGCAGGAAGGAGGCAGAGTCCCGCTTC------CCCA-CCCC-AGG-GAAGGAGCAGGAAGGAGGCAGAGT-----CCCGCTTCCCCAAACTTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCAGCATGATCGCCTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91965901 129 - 92844088 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------GCCA-CCCC-GGG-GAAGGAGCATGAAGGAGGCAGAGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613450 129 + 96509753 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------GCCA-CCCC-GGG-GAAGGAGCATGAAGGAGGCAGAGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16068905 129 - 16982598 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------GCCA-CCCC-GGG-GAAGGAGCATGAAGGAGGCAGAGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912251 129 - 3785965 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------ACCA-CCCC-GGG-GAAGGAGCATGAAGGAGGCAGAGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584290 130 - 90373283 AGCACAGAGCCCCTGCCTGGAGGGCCGCAGGAGACCTT-------------------------------------------------------------------------------------C------GCCACCCCC-GGG-GAAGGAGCATAAAGGAGGCAGAGT-----CCCGCTTCCCCAAGCCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459378 129 + 6149316 AGCACAGAGCCCCTGCCTGGAGGGCCCCAGGAGACCTT-------------------------------------------------------------------------------------C------GCCA-CCCC-AGG-GAAGGAGCATGAAGGAGGCAGAGT-----CCCGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692169 128 - 5823884 AGCACAGAGCCCCTGCCTGGA-GGCCCCCGGAGAGCTT-------------------------------------------------------------------------------------C------GCCA-CCCC-GGG-GAAGGAGCATGAAGGAGGCACAGT-----CTTGCTTCCCCAAACCTCC-CAAGGTCTCCTG---------------------TTTTG-------ACCCCATCACGATCGCCTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398612 130 + 159171411 AGCACAGAGGCCCCTGCCCAAGGGCCCCAGGAGACCGT-------------------------------------------------------------------------------------C------CCCA-CCCC-TGGGAAAGGAGCAGGAAGGAGGCGGAAT-----CCTGTTTCCCCAAACCTCC-TGAGGGCTGCAG---------------------TTTTG-------ACCCCAGCAGGAACGCCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15520060 120 + 16356641 AGCACAGAGGCCCCTGGCCAAGGGCCCCAGGAGACCGT-------------------------------------------------------------------------------------C------CCCA-CCCC-TGG----------GGAAGGGGGCGGAGC-----CCTATTTCCCCAAACCTCC-CCAGAGCTCCAG---------------------TTTTG-------ACCCCAGCAGTATCGCCTT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366646 129 + 1231380 AGCACAGAGGCCCCTGCCCAAGGGCCCCAGGAGACCGT-------------------------------------------------------------------------------------C------CCCA-CCCC-AGGGGAAGCAGTAGGAAGGAGGCGGAGG-----CCTG-TTCCCCAAACCTCC-CGAGGGCTCCAG---------------------TTTTG-------ACCCCAGCAGGATTGCCTT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1928794 130 + 11732439 AGCACAGAGGACCCCGCCCAAGGGCCCCAGGAGACCGT-------------------------------------------------------------------------------------C------CCCA-CCCC-TGGGGAAGGAGCAGGAAGGAGGCGGAGT-----CCTGTTTCCCCAAACCTCC-CGAGGGCTCCAG---------------------TTTTG-------ACCCCGGCAGGATCGCCTT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22144497 94 + 22939663 AACACAG----------------------------CTC-------------------------------------------------------------------------------------C------CCCA--------G-GAAGGTGCTGGAGGGAGGCACAGC-----CCTGGGGTCCCAAAACTTT-GGAGGT-TCCAG---------------------CTGAG-------ACCTCAGCTTTtttttttt i otoGar3.GL873542 C 0 I 470 s mm10.chr2 181093751 115 + 182113224 AGCACCTAGCTCCTT------GGACCGCAG----CCCC-------------------------------------------------------------------------------------C---AAGTCCA-CCCT-GGG-AACAAAAGACAGAGGCGG-----------TCCACTTCCAACACCTTTG-ACAAATGTCCTT---------------------TTTGT-------TCCCCAGCTCTATGGCTT- i mm10.chr2 I 64 C 0 s canFam3.chr24 47072109 115 + 47698779 GGCACAT-GCGCCCTCCCGAGGCACACGGCGAGGTCAG-------------------------------------------------------------------------------------CCGCCGTCCCA-CCGC-AGC-GGAGGATGGGGACGCGGGTGCCGTCTCCCCCCGGGGCCCCCGGCCTCC-CACGGCCCCCAC---------------------------------------------------- i canFam3.chr24 I 1 C 0 s dasNov3.JH567899 89133 159 + 555560 TCCGCAGCCAGCCCCACCAAGGGGACCCCACAGGCTTT-------------------------------------------------------------------------------------C------TCTG-CCCCTTGG-GAAGGAGGATGAAGAAGGGTGTCC-----CCTGCCTCCCAGCTCCTTCGCCAGGTCTCCAAACCAATCCGCCCGCAGATTGACTTTGCTTAAAAATCCTAACACGATCACTTC i dasNov3.JH567899 C 0 C 0 a score=194476.000000 s hg38.chr20_KI270871v1_alt 6462 22 + 58661 GACCAAGAGGCCCCTCCCGGG--C s panTro5.chr20 65576244 22 + 66533130 GACCAAGAGGCCCCTCCCGGG--C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345494 22 + 62195757 GACCAAGAGGCCCCTCCCGGG--C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756111 22 - 1017659 GACCAAGAGGCCCCTCCCGGG--C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246840 22 - 110113093 GACCAAGAGGCCCCTCCCGGG--C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966030 22 - 92844088 GACCAAGAGGCCCCTCCCGGG--C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613579 22 + 96509753 GACCAAGAGGCCCCTCCCGGG--C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069034 22 - 16982598 GACCAAAAGGCCCCTCCCGGG--C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912380 22 - 3785965 GACCAAGAGGCCCCTCCCGGG--C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584420 22 - 90373283 GACCAAGAGGCCCCTCCCGGG--C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459507 22 + 6149316 GACCAAGAGGCCCCTCCCGGG--C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692297 22 - 5823884 GACCAAGAGGCCCCTCCCGGG--C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398742 21 + 159171411 GCCCAAGAGGCCCCTCCCAGG--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15520180 21 + 16356641 GCCCAAGAGGCCCCTCCCAGG--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366775 22 + 1231380 GCCCAGGAGGCCCTTCCCAGGC-- i cebCap1.NW_016107870v1 C 0 I 85 s aotNan1.NW_018500483v1 1928924 22 + 11732439 GCCCAAGAGGCCCCTCCCAGG-C- i aotNan1.NW_018500483v1 C 0 I 5 s mm10.chr2 181093866 12 + 182113224 ---CTTGAGAATCCT--------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47072224 22 + 47698779 GCCCTGGAGGCTCCGTCTGGG--C i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89292 19 + 555560 GCCCAGGAAGCAGGTCCCA----- i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22144591 470 + 22939663 I a score=24690.000000 s hg38.chr20_KI270871v1_alt 6484 10 + 58661 CGGCCCTGCC s panTro5.chr20 65576266 10 + 66533130 CGGCCCTGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345516 10 + 62195757 CGGCCCTGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756133 10 - 1017659 CGGCCCTGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246862 10 - 110113093 TGGCCCTCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966052 10 - 92844088 TGCCCCTGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613601 10 + 96509753 TGCCCCTGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069056 10 - 16982598 TGCCCCTGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912402 10 - 3785965 TGCCCCTGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584442 10 - 90373283 CGCCCCTGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459529 10 + 6149316 TGCCCCTGCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692319 10 - 5823884 CGGCCCTGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398763 6 + 159171411 ---CATAGG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15520201 6 + 16356641 ---CACAGG- i saiBol1.JH378156 C 0 C 0 s mm10.chr2 181093878 9 + 182113224 -GGGCCTGAG i mm10.chr2 C 0 C 0 s canFam3.chr24 47072246 3 + 47698779 AGA------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89311 9 + 555560 -GGTCCTGCG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1928946 5 + 11732439 I e cebCap1.NW_016107870v1 366797 85 + 1231380 I e otoGar3.GL873542 22144591 470 + 22939663 I a score=529897.000000 s hg38.chr20_KI270871v1_alt 6494 70 + 58661 ------GCCCGATTCTGCAATGGGATC---GTCCTGTAGCCACACTGAAGCTCCGGCT--GTCGCCA----------CC---AGGCACCTG----AGA s panTro5.chr20 65576276 70 + 66533130 ------ACCCGATTCTGCAATGGGATC---GTCCTGTAGCCACACTGAAGCTCCGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345526 70 + 62195757 ------ACCCGATTCTGCAATGGGATC---GTCCTGTAGCCACACTGAAGCTCCGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756143 70 - 1017659 ------GCCCGATTCTGCAATGGGATC---GTCCTGTAGCCACACTGAAGCTCCGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246872 70 - 110113093 ------GCCCGATTCTGCAATGGGATC---GTCCTGTAGCCACACTGAAGCTCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966062 70 - 92844088 ------GCCCAATTCTGCGATGGAATC---GTCCTGTCGCCACACTGAAGCCCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613611 70 + 96509753 ------GCCCAATTCTGCGATGGAATC---GTCCCGTCGCCACACTGAAGCCCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069066 70 - 16982598 ------GCCCAATTCTGCAATGGAATC---GTCCTGTCGCCACACTGAAGCCCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912412 70 - 3785965 ------GCCCAATTCTGCGATGGAATC---GTCCTGTCGCCACACTGAAGCCCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584452 70 - 90373283 ------GCCCAATTCTGTGATGGAATC---GTCCTGTCGCCACACTGAAGCTCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459539 70 + 6149316 ------GCCCAATTCTGCGATGGAATC---GTCCTGTCGCCACACTGAAGCCCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692329 70 - 5823884 ------GCCCAGTTCTGCAATGGAATG---GTCCTGTCGCCACACTGAAGCTCTGGCT--GTCGCCA----------CC---AGGCACCTG----AGA i colAng1.NW_012114444v1 C 0 I 182 s calJac3.chr5 57398769 79 + 159171411 ------GCCAGATTCTGCAATGGGACT---GTCCTCCAGCAATATCGAAGTGCTGGCT--GCAGCCA-TGTCCACACCC---AGGCCCCCG----AGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15520207 79 + 16356641 ------GCCAGATTCTGCTACAAGACT---GTCCTCCAGTGACGCCGAAGCGCTGGCT--GCAGCCA-TGCCCACCCCC---AGGCCCCCG----AGA i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1928951 79 + 11732439 ------GCCAGATTCTGCAATGGGACT---GTCCTCCAGCGACACCGAAGCGCTGGCT--GCAGCCA-TGCCCACCCCC---AGGCCCCCG----AGA i aotNan1.NW_018500483v1 I 5 C 0 s mm10.chr2 181093887 80 + 182113224 ------GCCTAGGtctgctatagaaaccatgtctgatagttgtgttg----tctagtttggtagccactgaccaca-tc---tggccactg----aga i mm10.chr2 C 0 C 0 s canFam3.chr24 47072249 50 + 47698779 ------GGACGATGCGGAGATGGTCTC---------------------------TGCT--CCAGCCC----------CC---AAGCACCCAGCGCAGA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89320 75 + 555560 GCTGATGGAACATTCTGAGGTG---TC---GACCCCTGTCCAC-CTGAAATGGTGACC--GCCAGCC----------CCGTGGGGCTGCTG----AGC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 366797 85 + 1231380 I e otoGar3.GL873542 22144591 470 + 22939663 I a score=20386.000000 s hg38.chr20_KI270871v1_alt 6564 3 + 58661 CTC s panTro5.chr20 65576346 3 + 66533130 CTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345596 3 + 62195757 CTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756213 3 - 1017659 CTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246942 3 - 110113093 GTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966132 3 - 92844088 CTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613681 3 + 96509753 CTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069136 3 - 16982598 CTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912482 3 - 3785965 CTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584522 3 - 90373283 CTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459609 3 + 6149316 CTC i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57398848 1 + 159171411 --C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15520286 1 + 16356641 --C i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1929030 1 + 11732439 --C i aotNan1.NW_018500483v1 C 0 I 9 s mm10.chr2 181093967 3 + 182113224 ctc i mm10.chr2 C 0 C 0 s canFam3.chr24 47072299 3 + 47698779 CAC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89395 3 + 555560 CGC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 366797 85 + 1231380 I e otoGar3.GL873542 22144591 470 + 22939663 I e colAng1.NW_012114444v1 4692399 182 - 5823884 I a score=11200.000000 s hg38.chr20_KI270871v1_alt 6567 2 + 58661 GA s panTro5.chr20 65576349 2 + 66533130 GA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345599 2 + 62195757 GA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756216 2 - 1017659 GA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246945 2 - 110113093 AA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966135 2 - 92844088 GA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613684 2 + 96509753 GA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069139 2 - 16982598 GA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912485 2 - 3785965 GA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584525 2 - 90373283 GA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459612 2 + 6149316 GA i manLeu1.NW_012104365v1 C 0 C 0 s mm10.chr2 181093970 1 + 182113224 -a i mm10.chr2 C 0 I 1 s canFam3.chr24 47072302 2 + 47698779 GG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89398 2 + 555560 GG i dasNov3.JH567899 C 0 I 7 e aotNan1.NW_018500483v1 1929031 9 + 11732439 I e cebCap1.NW_016107870v1 366797 85 + 1231380 I e otoGar3.GL873542 22144591 470 + 22939663 I e saiBol1.JH378156 15520287 0 + 16356641 C e calJac3.chr5 57398849 0 + 159171411 C e colAng1.NW_012114444v1 4692399 182 - 5823884 I a score=90450.000000 s hg38.chr20_KI270871v1_alt 6569 15 + 58661 GAGTGAATCTCTAAC s panTro5.chr20 65576351 15 + 66533130 GAGTGAATCTCTAAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345601 15 + 62195757 GAGTGAATCTCTAAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756218 15 - 1017659 GAGTGAATCTCTAAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246947 15 - 110113093 GAGTGAATCTCTAAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966137 15 - 92844088 GAGTGAATCTCTAAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613686 15 + 96509753 GAGTGAATCTCTAAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069141 15 - 16982598 GAGTGAATCTCTAAT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912487 15 - 3785965 GAGTGAATCTCTAAT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584527 15 - 90373283 GAGCGAATCTCTAAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459614 15 + 6149316 GAGTGAATCTCTAAT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692581 15 - 5823884 GAGTGAATCTCTAAT i colAng1.NW_012114444v1 I 182 C 0 s calJac3.chr5 57398849 6 + 159171411 ---------TCTCAT i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15520287 6 + 16356641 ---------TCTCAT i saiBol1.JH378156 C 0 I 2 s mm10.chr2 181093972 14 + 182113224 gaatgACT-TCCAGC i mm10.chr2 I 1 C 0 s canFam3.chr24 47072304 15 + 47698779 GCCCCGAGGCCCAGC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89407 15 + 555560 GACTGCATTCCTACT i dasNov3.JH567899 I 7 C 0 e aotNan1.NW_018500483v1 1929031 9 + 11732439 I e cebCap1.NW_016107870v1 366797 85 + 1231380 I e otoGar3.GL873542 22144591 470 + 22939663 I a score=3798.000000 s hg38.chr20_KI270871v1_alt 6584 1 + 58661 C s panTro5.chr20 65576366 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345616 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756233 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246962 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966152 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613701 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069156 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912502 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584542 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459629 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692596 1 - 5823884 A i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398857 1 + 159171411 T i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15520295 1 + 16356641 T i saiBol1.JH378156 I 2 C 0 s cebCap1.NW_016107870v1 366882 1 + 1231380 C i cebCap1.NW_016107870v1 I 85 C 0 s mm10.chr2 181093986 1 + 182113224 T i mm10.chr2 C 0 C 0 s canFam3.chr24 47072319 1 + 47698779 C i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 89422 0 + 555560 C e aotNan1.NW_018500483v1 1929031 9 + 11732439 I e otoGar3.GL873542 22144591 470 + 22939663 I a score=524258.000000 s hg38.chr20_KI270871v1_alt 6585 55 + 58661 GTGCCCG------TTATAATCCATGTTattttaacagccacatgtggctggcagctcctgt s panTro5.chr20 65576367 55 + 66533130 GTGCCCA------TTATAATGCATGTTATTTTAACAGCCACACGTGGCTGGCAGCTCCTGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345617 55 + 62195757 GTGCCCA------TTATAATGCATGTTATTTTAACAGCCACACGTGGCTGGCAGCTCCTGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756234 55 - 1017659 GTGCCTA------TTATAATGCATGTTATTTTAACAGCCACACGTGGCTGGCAGCTCCTGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109246963 55 - 110113093 GTGCCCA------TTTTAATGCATGTTATTTTAACAGCCACACGTGGCTGGCAGCTCCTAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966153 55 - 92844088 GTGCCCA------TTTTAATGCACATTATTTTAACAGCCACCCGTGGCTGGCAGCTCCTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613702 55 + 96509753 GTGCCCA------TTTTAATGCACATTATTTTAACAGCCACCCGTGGCTGGCAGCTCCTGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069157 55 - 16982598 GTGCCCA------TTTTAATGCACATTATTTTAACAGCCACCTGTGGCTGGCAGCTCCTGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912503 55 - 3785965 GTGCCCA------TTTTAATGCACGTTATTTTAACAGCCACCCGTGGCTGGCAGCTCCTGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584543 55 - 90373283 GTGCCCA------TTTTAATGCACGTTATTTTAACAGCCACCGGTGGCTGGCAGCTCCTGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459630 55 + 6149316 GTGCCCA------TTTTAATGCACGTTATTTTAACAGCCACCCGTGGCTGGCAGCTCCTGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692597 55 - 5823884 GTGCCCA------TTTAAATGCACGTTATTTTAACAGCCATCCGTGGCTGGCAGCTCCTGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57398858 56 + 159171411 GCGCCCA-----TTTTTAATGCACATTATTTTCACAGTCACGCGTGCTGGGCAGCTCCTGT i calJac3.chr5 C 0 M 942 s saiBol1.JH378156 15520296 55 + 16356641 GCGCCCA------TTTTAATACACATTATTTTCATAGCCACGCGTGGCTGGCAGCTCCTGT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366883 55 + 1231380 GTGCCCA------TTTCAATGCACAGTGTTTTCACAGCCACTCGTGGCTGGCAGCTCCTGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1929040 55 + 11732439 GCGCCCA------TTTTAATGCACATTATTTTCACAGCCACGCATGGCTGGCAGCTCCTGT i aotNan1.NW_018500483v1 I 9 C 0 s mm10.chr2 181093987 43 + 182113224 GTGTCCA------TTTTAATGAATGT------------CATATGTGGCTTGTCATTCTTGT i mm10.chr2 C 0 C 0 s canFam3.chr24 47072320 41 + 47698779 --------------------GCCCGGGGGTGTCCCGGCCGCACGGAGGCAGGACCAcccgc i canFam3.chr24 C 0 I 20 s dasNov3.JH567899 89422 40 + 555560 ---TCCACTTGATTTTTAATGAACGT----------------CAAGGCTGTGA--TTCTGT i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22144591 470 + 22939663 I a score=390413.000000 s hg38.chr20_KI270871v1_alt 6640 50 + 58661 atggggcaacgTGGTCTGAGAGCC-GGGGAG-AGCTGGCAGGGAGGCGCTGC s panTro5.chr20 65576422 50 + 66533130 ATGGGGCAACGTGGTCGGAGAGCC-GGGGAG-AGCTGGCAGGGAGGCGCTGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345672 50 + 62195757 ATGGGGCAATGTGGTCGGAGAGCC-GGGGAG-AGCTGGCAGGGAGGCGCTGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756289 50 - 1017659 ACGGGGCAACGTGGTCTGAGAGCC-GGGGAG-AGCTGGCAGGGAGGCACTGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247018 43 - 110113093 ACGGGGCAACGTGGTCT--------GGGGAG-AGCTGGCAGGGAGGCGCTGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966208 50 - 92844088 ATGGGGCAACGTGGTCTGAGAGCC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613757 50 + 96509753 ATGGGGCAACGTGGTCTGAGAGCC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069212 50 - 16982598 ATGGGGCAACGTGGTCTGAGAGCC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912558 50 - 3785965 ATGGGGCAACGTGGTCTGAGAGCC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584598 50 - 90373283 ATGGGGCAACGTGGTCTGAGAGCC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459685 50 + 6149316 ATGGGGCAACGTGGTCTGAGAGCC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692652 50 - 5823884 ATGGGGCAACGTGGTCTGAGAGTC-AGGGAG-AGCTGGTGGGGAGGCGCTGC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15520351 49 + 16356641 CTGGGGCAGTGTGATCTGAGAGCT-GGGGGG-AGCTGG-GGGGAGGCACTGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 366938 49 + 1231380 CTGGGGCAGCGTGGTCTGAGGGCT-GGGGAG-AGCTGG-GCAGAGGCACTGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1929095 39 + 11732439 CTGGGGCAGCGTGGTCTGACAGCT-GGGG------------GGAGGCACTGC i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181094030 44 + 182113224 CTGAGAAAGCATGGCTTGAGAGCCTAACAAG-ATCTGGGGATGAG------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47072381 46 + 47698779 CTGGGGGACCGGGGCCCAGGACGC-TCGAAC-TGC----ACGGAGGCCCCAC i canFam3.chr24 I 20 I 3 s dasNov3.JH567899 89462 47 + 555560 AAGGGGCAGCGCAGTTTTAGGTCC-TGACAGCAGCTGGGGCACAGGTC---- i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22144591 470 + 22939663 I e calJac3.chr5 57398914 942 + 159171411 M a score=1108867.000000 s hg38.chr20_KI270871v1_alt 6690 122 + 58661 AGGCACAGCCCC-CCAAG-AC-----CCCCAAAGCTTTGTG------------------GG-----GGACC-------------CGTG-CAGCT-GCACCTCCCC----CTGGGGT--------CCGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTCCACAC s panTro5.chr20 65576472 122 + 66533130 AGCCACAGCCCC-CCAAG-AC-----TCCCAAAGCTTTGTG------------------GG-----GGACC-------------CGTG-CAGCT-GCACCTCCCC----CTGGGGT--------CCGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTCCACAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345722 122 + 62195757 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGCTTTGTG------------------GG-----GGACC-------------CGTG-CAGCT-GCACCTCCCC----CTGGGGT--------CCGCAGCTGGCACTGGGCTTCCTTCCTGCCC-TATCAGCCACAGGGAGCTCCACAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756339 122 - 1017659 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGCTTTGTG------------------GG-----GGACC-------------CGTG-CAGCT-GCACCTCCCC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CGTCAGCCACAGGGAGCTCCACAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247061 122 - 110113093 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGCTTTGTG------------------GG-----GGGCC-------------CGTG-CAGCT-GCACCTCCCC----CTGGGGT--------CCGCGGCCGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTCCACGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966258 122 - 92844088 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------CATG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTGCCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613807 122 + 96509753 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------CATG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTGCCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069262 122 - 16982598 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------CATG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTGCACAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912608 122 - 3785965 AGCCACAGCCCC-TCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------TGTG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTCCGCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584648 118 - 90373283 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------CGTG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGG----CTTCCTGCCC-CATCAGCCACAGGGAGCTCCACAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459735 122 + 6149316 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------CGTG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCTGCCC-CATCAGCCACAGGGAGCTCCACAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692702 122 - 5823884 AGCCACAGCCCT-CCAAG-AC-----CCCCAAAGTTTTGTG------------------GG-----GGGCC-------------CGTG-CAGCT-GCACCTCACC----CTGGGGT--------CTGCAGCTGGCACTGGGCTTCCTTCCAGCCC-CATCAGCCACAGGGAGCTCCACAC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15520400 122 + 16356641 AGCCACAGCCCC-CCAAG-AC-----CCCCAAAGCTTTGTG------------------GG-----GGGCC-------------CAAG-CAGCT-GCATCTCCCC----CTGGGGC--------CCACGGCTGGCACTGGGCTTCCTTCCCGCCT-CATCAGCCACAGGGAGCTCCACAC i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 366987 122 + 1231380 CGCCACGGCCCC-CCAAG-AC-----CCCCAAAGCTCTGTG------------------GG-----GGGCC-------------CGAG-CAGCT-GCACCTCCCC----CTGGGGC--------CCACAGCTGGCACTGGGCTTCCTTCCCGCTT-CATCAGCCACATAGAGCTCCACAC i cebCap1.NW_016107870v1 C 0 I 44 s aotNan1.NW_018500483v1 1929134 122 + 11732439 AGTCACAGCCCC-TCAAG-GC-----CCCCAAAGTTTTGTG------------------GG-----GGACC-------------CGAG-CAGCT-GCACCTCCCC----CTGGGGA--------CCACGGCTGGCACTGGGCTTCCTTCCTGCTT-CATCAGCCACAGGGAGCTCCACAC i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22145061 130 + 22939663 AGCCACAGTCCC-CTGAGCACC---ACCCTGTGGCTTTGGGTATGTGAGGACCCAGTCTGG-----GGCCA-------------CATGACACCT-GTCCCCTCTG----CTGGG---------------GCTGGCATT-GGCTCTTCTCCTGTCC-CGATGGTCCTA------TCAGCAC i otoGar3.GL873542 I 470 I 7 s mm10.chr2 181094074 125 + 182113224 -GAAACTGCTCT-CCACA-GC-----CTTCCCTGATTGGTG------------------GG-----TA--C-------------CAAG-GACCT-ACCTCTAATTTGGGCTGGTGTGACTATTCCCTCTGATGCCA------TTTTTTTCTGTCC-CATCAGCAAAGTGAAGCTATATCT i mm10.chr2 C 0 C 0 s canFam3.chr24 47072430 120 + 47698779 GGCCGCACCCCTGTCGCG-ACAGCGACCCTGAGGCCTGGC-------------------TG-----AGCCC-------------CACG-GA-----CACCCCGCT----CCGGGCT--------CCG-GGCTGGTCCTGGG---TCTTCCTGCCCACAGAAGCCAAGGAGAGCTTCCCCG i canFam3.chr24 I 3 I 2 s dasNov3.JH567899 89509 136 + 555560 GGCCACGGCCCT-CCCCG-CC--TGACCCCGCTGCTGGGAG------------------GGCGCGAGGACCCCGCCTCCGGCAGCGTG-ACGCTGGCCCCTCCCT----CAGGCCT--------TGGCTGCTGTCAGGGGGC-----TCCCGCCCATGGCAGTCAAACGGAACCGT---- i dasNov3.JH567899 C 0 C 0 e calJac3.chr5 57398914 942 + 159171411 M a score=183965.000000 s hg38.chr20_KI270871v1_alt 6812 58 + 58661 TGCGTGAGAAGGCCCTG-TGACCCGAGGTCGGACAGGCGGACA----------GGCCC------ACAGT-----GAGCTC s panTro5.chr20 65576594 58 + 66533130 CGCGTGAGAAGGCCCTG-TGACCCCAGGTCGGACAGGCGGGGA----------GGCCC------ACAGC-----GAGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345844 58 + 62195757 CGCGTGAGAAGGCCCTG-TGACCCCAGGTCGGACAGGCGGGCA----------GGCCC------ACAGC-----GAGCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756461 58 - 1017659 TGCGTGAGAAGGCCCTG-TGACCTGAGGTCGGACAGGCAGGCA----------GGCCC------ACAGC-----GAGCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247183 53 - 110113093 TGCGTGAGAAGGCCCCG-TGACCTGAGGCCGGACAGGCAGGCA----------GGCCC------ACAGC-----G----- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966380 47 - 92844088 TGTGTGAGAAGGCGCCG-TGACCCGAGGCCGGACAGGCA---------------------------GGC-----GAGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613929 47 + 96509753 TGTGTGAGAAGGCGCCG-TGACCCGAGGCCGGACAGGCA---------------------------GGC-----GAGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069384 47 - 16982598 TGTGTGAGAAGGCGCCG-TGACCCGAGGCCGGACAGGCA---------------------------GGC-----GAGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912730 47 - 3785965 TGTGTGAGAAGGCGCCG-TGACCCGAGGCCGGACAGGCA---------------------------GGC-----GAGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584766 58 - 90373283 TGTGTGAGAAGGCGCCG-TGACCCGAGGCCGGACAGGCAGGCA----------GGCCC------ACGGC-----GAGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459857 47 + 6149316 TGTGTGAGAAGGCGCCG-TGACCCGAGGCCGGACAGGCA---------------------------GGC-----GAGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692824 58 - 5823884 TGCGTGAGAAGGCACCG-TGACCCAAGGCCGGACAGGCAGGCA----------GGCCC------ACGGC-----GAGCCC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15520523 43 + 16356641 TGGGTAAAAAGGC----------------CGGGCAGGCAGGCA----------GGCCC------ACCGC-----TACCCC i saiBol1.JH378156 I 1 C 0 s aotNan1.NW_018500483v1 1929257 43 + 11732439 TGGGTAAGAAGGC----------------CAGGCAGGCGGGCA----------GGCCC------ACGGC-----AACCCC i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22145198 53 + 22939663 CAGATGTGGAGGCC------------GGTGGGGTAGACAGACA----------GGCCTATAGGGACCGT-----GGGCCC i otoGar3.GL873542 I 7 I 16 s mm10.chr2 181094199 66 + 182113224 TATCTGCAAATGCTTGG-CCAATCTCAATC--ACAGGCAGATGCCAACTGGGCAGCCC------ATGAG-----GATGCC i mm10.chr2 C 0 I 13 s canFam3.chr24 47072552 64 + 47698779 TGTGGGAGCCGCCCCAGACGGCAACACCCCGGGTGGGCGGGCA----------AGGCC------GGGGCCCCGGGATCAC i canFam3.chr24 I 2 I 10 s dasNov3.JH567899 89645 51 + 555560 CGCGCCTGCAGACGGCA-AAGCCCGGGGCGGGCCTG-----------------GGCTC------GTGGT-----GGGGCA i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 367109 44 + 1231380 I e calJac3.chr5 57398914 942 + 159171411 M a score=258547.000000 s hg38.chr20_KI270871v1_alt 6870 27 + 58661 ---GA--GACC-CACAGACACTGACCGAGACCC s panTro5.chr20 65576652 27 + 66533130 ---GA--GACC-CACAGACACTGACCAAGACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345902 27 + 62195757 ---GA--GACC-CACAGACACTGACCAAGACCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756519 27 - 1017659 ---GA--GACC-CGCAGACACTGACCAAGACCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247236 17 - 110113093 ----------------GACACTGACCAAGACCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966427 27 - 92844088 ---GA--GACC-CACAGATGCTGACCAAGACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95613976 27 + 96509753 ---GA--GACC-CACAGATGCTGACCAAGACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069431 27 - 16982598 ---GA--GACC-CACAGATGCTGACCAAGACCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912777 27 - 3785965 ---GA--GACC-CACAGATGCTGACCAAGACCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584824 27 - 90373283 ---GA--GACC-CACAGATGCTGACCAAGACCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459904 27 + 6149316 ---GA--GACC-CACAGATGCTGACCAAGACCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692882 27 - 5823884 ---GA--GACC-CACAGATGCTGACCAAGACCC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15520566 27 + 16356641 ---GC--AGCC-CACAGACGCTGACCGAGACGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367153 27 + 1231380 ---GA--GGCC-CACAGACCCTGACCGAGACCA i cebCap1.NW_016107870v1 I 44 C 0 s aotNan1.NW_018500483v1 1929300 27 + 11732439 ---GA--GGCC-CACAGACCCTGACAGAGACCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22145267 27 + 22939663 ---GA--TACC-TGCAGACATTGACTGAGACCA i otoGar3.GL873542 I 16 C 0 s mm10.chr2 181094278 29 + 182113224 ---GACTGGCC-CACAGACACTGGCTGAGGCCA i mm10.chr2 I 13 C 0 s canFam3.chr24 47072626 27 + 47698779 ---GG--TGCC-CGCGGACACTCACCAAGACCA i canFam3.chr24 I 10 C 0 s dasNov3.JH567899 89696 31 + 555560 GAGGT--GGCCGCATGGACGCTCACCGTGACCG i dasNov3.JH567899 C 0 C 0 e calJac3.chr5 57398914 942 + 159171411 M a score=367596.000000 s hg38.chr20_KI270871v1_alt 6897 35 + 58661 GACAGGAC-AGACATGCACCAAAA----ACACGCGGACAC s panTro5.chr20 65576679 35 + 66533130 GACAGGAC-ACACATGCACCAAAA----ACACGCGGACAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345929 35 + 62195757 GACAGGAC-ACACATGCACCAAAA----ACACGCGGACAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756546 35 - 1017659 GACAGGAC-AGACATGCACCAAAA----ACACGAGGACAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247253 35 - 110113093 AACAGGAC-AGACAAGCACCAAAA----ACATGTGGACAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966454 35 - 92844088 GACAGGAC-AGACAGGCACCAAAA----ACACGCGGACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614003 35 + 96509753 GACAGGAC-AGACAGGCACCAAAA----ACACGCGGACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069458 35 - 16982598 GACAGGAC-AGACAGGCACCAAAA----ACACGCGGACAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912804 35 - 3785965 GACAGGAC-AGACAGGCACCAAAA----ACACGCGGACAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584851 35 - 90373283 GACACGAC-AGACAGGCACCAAAA----ACACGCGGACAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459931 35 + 6149316 GACAGGAC-AGACAGGCACCAAAA----ACACGCGGACAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692909 35 - 5823884 GACAGGAC-AGACAGGCACCAAAA----ACACGCGGACAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57399865 34 + 159171411 GACAGGAC-AGACATGCA-CCAAA----CCACACGGACAC i calJac3.chr5 M 942 C 0 s saiBol1.JH378156 15520593 35 + 16356641 GAGAGGGC-AGTCTTGCACCCAAA----CCACACGGATAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367180 35 + 1231380 GATAGGGC-AGACATGCACCAAAA----CCACACAGACAC i cebCap1.NW_016107870v1 C 0 I 204 s aotNan1.NW_018500483v1 1929327 35 + 11732439 GACAGGAC-AGACGTGCACCAAAA----CCACACGGACAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22145294 34 + 22939663 GACAGGAC-AGACAGCCTCCCACA-----CATGCAGCTGC i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181094307 34 + 182113224 GACAGGGC-AGATGGGCACCAAGA-----CACACAGACAC i mm10.chr2 C 0 C 0 s canFam3.chr24 47072653 33 + 47698779 GACGGGAC-ACACAGGCACTCAGACACAGCACGC------ i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89727 19 + 555560 GACAGGACGAGACAGACAC--------------------- i dasNov3.JH567899 C 0 C 0 a score=103912.000000 s hg38.chr20_KI270871v1_alt 6932 20 + 58661 GTGTGCTTGAGAAGAGGAGG s panTro5.chr20 65576714 20 + 66533130 GTGTGCTTGAGAAGAGGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345964 20 + 62195757 GTGTGCTTGAGAAGAGGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756581 20 - 1017659 GTGTGCCTGAGAAGAGGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247288 15 - 110113093 GTGTGCTT-----GAGGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966489 20 - 92844088 TTGTGCTTGAGAAGAGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614038 20 + 96509753 TTGTGCTTGAGAAGAGGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069493 20 - 16982598 TTGTGCTTGAGAAGAGGAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2912839 20 - 3785965 TTGTGCTTGAGAAGAGGAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89584886 20 - 90373283 TTGTGCTTGAGAAGAGGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459966 20 + 6149316 TTGTGCTTGAGAAGAGGAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692944 20 - 5823884 TTGTGTTTGAGAAGAGGAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57399899 11 + 159171411 --GTG-CTGAGGAG------ i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15520628 9 + 16356641 ------CTGAGAAGA----- i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1929362 19 + 11732439 -CGTGCCTGAGAAGAGGAGG i aotNan1.NW_018500483v1 C 0 I 110 s otoGar3.GL873542 22145330 14 + 22939663 CCGCCCCTGAAGAG------ i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181094341 20 + 182113224 CTCCATCTGTGAAGAAGACT i mm10.chr2 C 0 C 0 s canFam3.chr24 47072686 20 + 47698779 TGCTGCCTTCGACGAGGAGG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89746 12 + 555560 ----GGCTGCCGCAAG---- i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 367215 204 + 1231380 I a score=-6563.000000 s hg38.chr20_KI270871v1_alt 6952 42 + 58661 GGGAGCC----------------------------------------------------------CGAACAGGCACGGGGGAGCCCG----------------------------------------------CACAGGCATGAGG s panTro5.chr20 65576734 42 + 66533130 GGGAGCC----------------------------------------------------------CGCACAGGCACGGGGGAGCCCA----------------------------------------------CACAGACATGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61345984 42 + 62195757 GGGAGCC----------------------------------------------------------CGCACAGGCACGGGGGAGCCCA----------------------------------------------CACAGACATGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756601 22 - 1017659 AGGAGCC----------------------------------------------------------CGCACAGG------------------------------------------------------------------CATGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247303 42 - 110113093 AGGAGCC----------------------------------------------------------TGCACAGGCACGGGGGAGCCCA----------------------------------------------CACAGGCATGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966509 80 - 92844088 AGGAGCC------------------------------------------------------------CACAGTCACGAGGGAGCCCA------CACAGGCACGAGGGGGCCCACACAGGCACGAGGGGGCCCACACAGGCACGAGG i rheMac8.chr10 C 0 I 20 s macFas5.chr10 95614058 80 + 96509753 AGGAGCC------------------------------------------------------------CACAGGCACGAGGGAGCCCACACAGGCAC------GAGGGGGCCCACACAGGCACAAGGGGGCCCACACAGGCACGAGG i macFas5.chr10 C 0 I 20 s macNem1.NW_012014244v1 16069513 80 - 16982598 AGGAGCC------------------------------------------------------------CACAGGCACGAGGGAGCCCACACAGGCAC------GAGGGGGCCCACACAGGCACGAGGGGGCCCACACAGGCACGAGG i macNem1.NW_012014244v1 C 0 I 20 s cerAty1.NW_012001373v1 2912859 40 - 3785965 AGGAGCC------------------------------------------------------------CACAGGCACGAGGGAGCCCA----------------------------------------------CACAGGCACGAGG i cerAty1.NW_012001373v1 C 0 I 120 s chlSab2.chr2 89584906 80 - 90373283 AGGAGCC------------------------------------------------------------CACAGGCATGAGGGAGCCCACACAGGCACG------AGGGAGCCTACACAGGCACGAGGGAGCCCACACAGGCACAAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5459986 140 + 6149316 AGGAGCCCACAGGCACGAGGGAGCCCACACAGGCACGAGGGAGCCCACACAGGCACGAGGGGGCCCACACAGGCACGAGGGAGCCCACACAGGCACG------AGGGGGCCCACACAGGCATGAGGGAGCCCACACAGGCACAAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4692964 40 - 5823884 AGGAGCC------------------------------------------------------------CACAGGCACGAGGGGGCCCA----------------------------------------------CACAGGCGCGAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57399911 19 + 159171411 AGGAGCT-----------------------------------------------------------GCACGGGCATGA-------------------------------------------------------------------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15520638 19 + 16356641 AGGAGCT-----------------------------------------------------------GCGCAGCAGGAC-------------------------------------------------------------------- i saiBol1.JH378156 I 1 C 0 s otoGar3.GL873542 22145344 14 + 22939663 TGGAGAC----------------------------------------------------------AGAATGG-------------------------------------------------------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094361 20 + 182113224 --AGACC----------------------------------------------------------TGTACGGACAAGAAG------------------------------------------------------------------ i mm10.chr2 C 0 C 0 s canFam3.chr24 47072706 19 + 47698779 ---GGCC----------------------------------------------------------CACACGGACAAGGGG------------------------------------------------------------------ i canFam3.chr24 C 0 I 1 s dasNov3.JH567899 89758 28 + 555560 -GGGACA----------------------------------------------------------GGCACGGACAAGGGAGGGGCGA----------------------------------------------------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e cebCap1.NW_016107870v1 367215 204 + 1231380 I a score=596995.000000 s hg38.chr20_KI270871v1_alt 6994 88 + 58661 GGGC--AGCCGGTGTT--GGGGGCTCCTCCTCCA-GCACGGGGGCAGGAGGCAGTGAGATGGGGTGTCGGACAAGACAGCACAAGTCAGAACC- s panTro5.chr20 65576776 85 + 66533130 GGGC--AGCCGGTGTT--GGGGG---CTCCTCCA-GCACGGGGGCAGGAGGCAGTGAGATGGGGTGTGGGACAAGACAGCACAAGTCAGAACC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346026 85 + 62195757 GGGC--AGCCGGTGTT--GGGGG---CTCCTCTA-GCACGGGGGCAGGAGGCAGTGAGATGGGGTGTGGGACAAGACAGCACAAGTCAGAACC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756623 85 - 1017659 GGGC--AGCCGGTGTT--GGGGG---CTCCTCCA-GCACGGGGGCAGGAGGCAGTGAGATGGCGTGTGGGACAAGACAGCACAAGTCAGAACC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247345 86 - 110113093 GGGC--AGCCGGTGTT--GGGGG---CTCTTCCAGGCATGGGGGCAGGAGGCAGTGAGATGCGGGGTGGGACAAGACAGCACAAGTCGGAGCC- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966609 86 - 92844088 GGGC--AGCTGCTGTT--GGGGG---CTCCTCCAAGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGCGACAAGACAGCACAAGTCAGAGCC- i rheMac8.chr10 I 20 C 0 s macFas5.chr10 95614158 86 + 96509753 GGGC--AGCTGCTGTT--GGGGG---CTCCTCCAAGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGCGACAAGACAGCACAAGTCAGAGCC- i macFas5.chr10 I 20 C 0 s macNem1.NW_012014244v1 16069613 86 - 16982598 GGGC--AGCTGCTGTT--GGGGG---CTCCTCCAAGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGCGACAAGACAGCACAAGTCAGAGCC- i macNem1.NW_012014244v1 I 20 C 0 s cerAty1.NW_012001373v1 2913019 86 - 3785965 GGGC--AGCTGCTGTT--GGGGG---CTCCTCCAAGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGCGACAAGACAGCACAAGTCAGAGCC- i cerAty1.NW_012001373v1 I 120 C 0 s chlSab2.chr2 89584986 86 - 90373283 GGGC--AGCCGCTGTT--GGGGG---CTCCTCCAGGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGGGACAAGACAGCACAAGTCAGAGCC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460126 86 + 6149316 GGGC--AGCTGCTGTT--GGGGG---CTCCTCCAAGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGCGACAAGACAGCACAAGTCAGAGCC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693004 86 - 5823884 GGGC--AGCCGCTGCT--GGGGG---ATCCTCCAGGCACGGGGGCAGGAGGCAGTGAGATGCAGGATGGGACAAGACAGCACAAGTCAGAGAT- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57399930 81 + 159171411 GGGC--AGGGTGGGT----GGGG---CTCCTCCAGGCGA-GAGGCAGAAGGCA-GGAGACGCGGGGTGGG-CAAGGCAGCACAAGTCGGAGCC- i calJac3.chr5 C 0 I 213 s saiBol1.JH378156 15520657 84 + 16356641 GGGC--AGCTGGGGT---GGGGG---CTCCTCCAGGCGAGGGGGCAGAAGGCAGGGAGACGGGGGGCGGG-CAAGGCAGCACAAGTCGGAGCC- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22145358 56 + 22939663 -------------GTC--AGAGG---CCCCTCCTGGCACAGGGTCAG-------TGAGAAGGGGGAC------AGACGACGCAGACA------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094381 87 + 182113224 -GGCAAAGCCAGGGCTAGGGGGG---TTCCTTTAGGCAC-AGGGTAGGAGACAGTGAGAAAGACGACAAGCCCACAAAGGACA-GTCACAGCA- i mm10.chr2 C 0 C 0 s canFam3.chr24 47072726 78 + 47698779 AAGC--GGCTGGGGAC---AGGG---CCCCCCCAGGCACAGGGGTGAGGGGCAGTGAGA-ACGGGATGGGGCAG---AGGGCAGGTCAGA---- i canFam3.chr24 I 1 C 0 s dasNov3.JH567899 89786 71 + 555560 AGCC--AGCAGGTG----GGGGG---CTC-TCCAGGCAGGGGGG----------TGAGACATGGGGTAGGGCGA---AGGGCCCGTCGGCACGA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e cebCap1.NW_016107870v1 367215 204 + 1231380 I a score=42685.000000 s hg38.chr20_KI270871v1_alt 7082 6 + 58661 GCCGTG s panTro5.chr20 65576861 6 + 66533130 GCCGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346111 6 + 62195757 GCCGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756708 6 - 1017659 GCCGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247431 6 - 110113093 GCCGTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966695 6 - 92844088 GCCGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614244 6 + 96509753 GCCGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069699 6 - 16982598 GCCGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913105 6 - 3785965 GCCGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585072 6 - 90373283 GCCGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460212 6 + 6149316 GCCGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693090 6 - 5823884 GCTGTG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15520741 6 + 16356641 GCCAGG i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22145414 6 + 22939663 GTCACA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094468 6 + 182113224 ACTGCA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 89857 2 + 555560 ----TG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e cebCap1.NW_016107870v1 367215 204 + 1231380 I e canFam3.chr24 47072804 0 + 47698779 C e calJac3.chr5 57400011 213 + 159171411 I a score=74547.000000 s hg38.chr20_KI270871v1_alt 7088 13 + 58661 GCCAAAGAGA-CCC s panTro5.chr20 65576867 13 + 66533130 GCCACAGAGA-CCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346117 13 + 62195757 GCCACAGAGA-CCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756714 13 - 1017659 GCCACAGAGA-CCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247437 13 - 110113093 GCCACAGAGA-CCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966701 13 - 92844088 GCCACAGAGA-CCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614250 13 + 96509753 GCCACAGAGA-CCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069705 13 - 16982598 GCCACAGAGA-CCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913111 13 - 3785965 GCCACAGAGA-TCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585078 14 - 90373283 GCCACAGAGACCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460218 13 + 6149316 GCCACAGAGA-CCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693096 13 - 5823884 GCCACAGAAA-CCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400224 13 + 159171411 GCCACAGAGA-CCC i calJac3.chr5 I 213 C 0 s saiBol1.JH378156 15520747 11 + 16356641 GC--CAGAGA-CCC i saiBol1.JH378156 C 0 I 367 s otoGar3.GL873542 22145420 7 + 22939663 GCCACAA------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094474 10 + 182113224 GTCACAGAAA---- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 89859 1 + 555560 G------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e cebCap1.NW_016107870v1 367215 204 + 1231380 I e canFam3.chr24 47072804 0 + 47698779 C a score=48334.000000 s hg38.chr20_KI270871v1_alt 7101 8 + 58661 CCCGGGAC s panTro5.chr20 65576880 8 + 66533130 CCCGGGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346130 8 + 62195757 CCCGGGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756727 7 - 1017659 CCCGGGA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247450 8 - 110113093 CCCGGGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966714 8 - 92844088 CCCAGGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614263 8 + 96509753 CCCAGGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069718 8 - 16982598 CCCAGGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913124 8 - 3785965 CCCAGGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585092 8 - 90373283 CCCAGGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460231 8 + 6149316 CCCAGGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693109 8 - 5823884 CCCAGGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400237 7 + 159171411 -CCAGGAT i calJac3.chr5 C 0 I 1 s otoGar3.GL873542 22145427 5 + 22939663 ---GAGAC i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181094484 2 + 182113224 ------AC i mm10.chr2 C 0 I 1 s canFam3.chr24 47072804 3 + 47698779 -----GAC i canFam3.chr24 C 0 I 1 s dasNov3.JH567899 89860 6 + 555560 --CGGCAC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e cebCap1.NW_016107870v1 367215 204 + 1231380 I e saiBol1.JH378156 15520758 367 + 16356641 I a score=10500.000000 s hg38.chr20_KI270871v1_alt 7109 1 + 58661 C s panTro5.chr20 65576888 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346138 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756734 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247458 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966722 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614271 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069726 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913132 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585100 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460239 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693117 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400245 1 + 159171411 C i calJac3.chr5 I 1 C 0 s cebCap1.NW_016107870v1 367419 1 + 1231380 C i cebCap1.NW_016107870v1 I 204 C 0 s dasNov3.JH567899 89866 1 + 555560 C i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181094486 1 + 182113224 I e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e canFam3.chr24 47072807 1 + 47698779 I e otoGar3.GL873542 22145432 1 + 22939663 I e saiBol1.JH378156 15520758 367 + 16356641 I a score=187171.000000 s hg38.chr20_KI270871v1_alt 7110 27 + 58661 CCCCTGGGGCAGCACGG-CCCGA-------------------------------------------------------------------G-CCCC s panTro5.chr20 65576889 90 + 66533130 CCCCTGGGGCAGCACAG-CCCGAGCCCCGCAGCCTGCCTGGCTCCCCACCCAGCCACA----GAGATCCTCCGGGGCAGCACAGCCCCAGG-CCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346139 90 + 62195757 CCCCTGGGGCAGCACAG-CCCGAGTCCCGCAGCCTGCCTGGCTCCCCACCCAGC----CACAGAGATCCTCCGGGGCAGCACAGCCCCAGG-CCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756735 27 - 1017659 CCCCTGGGGCAGCACAG-CCTGA-------------------------------------------------------------------G-CCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247459 27 - 110113093 CCCCTGGGGCAGCACAG-CCCGA-------------------------------------------------------------------G-CCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966723 27 - 92844088 TCCCTGGGGCAGCACAG-CCTGA-------------------------------------------------------------------G-CCCC i rheMac8.chr10 C 0 I 53 s macFas5.chr10 95614272 27 + 96509753 CCCCTGGGGCAGCACAG-CCTGA-------------------------------------------------------------------G-CCCC i macFas5.chr10 C 0 I 53 s macNem1.NW_012014244v1 16069727 27 - 16982598 CCCCTGGGGCAGCACAG-CCTGA-------------------------------------------------------------------G-CCCC i macNem1.NW_012014244v1 C 0 I 52 s cerAty1.NW_012001373v1 2913133 27 - 3785965 CCCCTGGGGCAGCACAA-CCTGA-------------------------------------------------------------------G-CCCC i cerAty1.NW_012001373v1 C 0 I 53 s chlSab2.chr2 89585101 27 - 90373283 CCCCTGGGGCAGCACAG-CCTGA-------------------------------------------------------------------G-CCCC i chlSab2.chr2 C 0 I 53 s manLeu1.NW_012104365v1 5460240 27 + 6149316 CCCCTGGGGCAGCACAG-CCTGA-------------------------------------------------------------------G-CCCC i manLeu1.NW_012104365v1 C 0 I 53 s colAng1.NW_012114444v1 4693118 27 - 5823884 CCCCTGGGGCAGCACAG-CCCAA-------------------------------------------------------------------G-CCCC i colAng1.NW_012114444v1 C 0 I 72 s calJac3.chr5 57400246 27 + 159171411 --CCCAGGGCAGCACAGCCCTGA-------------------------------------------------------------------GCCCCC i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15521125 28 + 16356641 CCCCCGGGGCAGCACAGCCCTGA-------------------------------------------------------------------G-TCCC i saiBol1.JH378156 I 367 I 1 s cebCap1.NW_016107870v1 367420 27 + 1231380 CCCCCGGGGCAGCACAGCCCTGA-------------------------------------------------------------------G--CCC i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22145433 26 + 22939663 CACACGGAGCAGTGCAG-CCTGA-------------------------------------------------------------------G-CCC- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181094487 25 + 182113224 ---CTGTTAAAGCCCAAGCCTGA-------------------------------------------------------------------G-CTCC i mm10.chr2 I 1 C 0 s canFam3.chr24 47072808 27 + 47698779 CACCCAGAGCAGCACAG-CCCGA-------------------------------------------------------------------G-ACCC i canFam3.chr24 I 1 I 1 s dasNov3.JH567899 89867 22 + 555560 -----AGCTCAGCACAGCCCCGA-------------------------------------------------------------------G-CAC- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I a score=1500.000000 s hg38.chr20_KI270871v1_alt 7137 1 + 58661 G s panTro5.chr20 65576979 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346229 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756762 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247486 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s canFam3.chr24 47072836 1 + 47698779 G i canFam3.chr24 I 1 C 0 e dasNov3.JH567899 89889 0 + 555560 C e mm10.chr2 181094512 0 + 182113224 C e aotNan1.NW_018500483v1 1929381 110 + 11732439 I e cebCap1.NW_016107870v1 367447 1 + 1231380 I e otoGar3.GL873542 22145459 0 + 22939663 C e manLeu1.NW_012104365v1 5460267 53 + 6149316 I e saiBol1.JH378156 15521153 1 + 16356641 I e calJac3.chr5 57400273 1 + 159171411 I e colAng1.NW_012114444v1 4693145 72 - 5823884 I e chlSab2.chr2 89585128 53 - 90373283 I e cerAty1.NW_012001373v1 2913160 53 - 3785965 I e macNem1.NW_012014244v1 16069754 52 - 16982598 I e macFas5.chr10 95614299 53 + 96509753 I e rheMac8.chr10 91966750 53 - 92844088 I a score=63287.000000 s hg38.chr20_KI270871v1_alt 7138 6 + 58661 CAGCCT s panTro5.chr20 65576980 6 + 66533130 CAGCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346230 6 + 62195757 CAGCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756763 6 - 1017659 CAGCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247487 6 - 110113093 CAGCCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966803 6 - 92844088 CAGCCT i rheMac8.chr10 I 53 C 0 s macFas5.chr10 95614352 6 + 96509753 CAGCCT i macFas5.chr10 I 53 C 0 s macNem1.NW_012014244v1 16069806 6 - 16982598 CAGCCT i macNem1.NW_012014244v1 I 52 C 0 s cerAty1.NW_012001373v1 2913213 6 - 3785965 CAGCCT i cerAty1.NW_012001373v1 I 53 C 0 s chlSab2.chr2 89585181 6 - 90373283 CAGCCT i chlSab2.chr2 I 53 C 0 s manLeu1.NW_012104365v1 5460320 6 + 6149316 CAGCCT i manLeu1.NW_012104365v1 I 53 C 0 s colAng1.NW_012114444v1 4693217 6 - 5823884 CAGCCT i colAng1.NW_012114444v1 I 72 C 0 s calJac3.chr5 57400274 6 + 159171411 CAGCTG i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15521154 6 + 16356641 CAGCCG i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 367448 6 + 1231380 CAGCCA i cebCap1.NW_016107870v1 I 1 C 0 s otoGar3.GL873542 22145459 4 + 22939663 --GCCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094512 5 + 182113224 -CACCT i mm10.chr2 C 0 I 1 s canFam3.chr24 47072837 6 + 47698779 CGGCCT i canFam3.chr24 C 0 I 2 s dasNov3.JH567899 89889 5 + 555560 CAGCC- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929381 110 + 11732439 I a score=603607.000000 s hg38.chr20_KI270871v1_alt 7144 56 + 58661 GCCTGGCTCCCCACCCGACCCCAACGTAGACGCTTCCTCTG--ACTCCAGCACAGCCC s panTro5.chr20 65576986 56 + 66533130 GCCTGGCTCCCCACCCGACCCCAACGTAGACGCTTCCTCTG--ACTGCAGCACAGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346236 56 + 62195757 GCCTGGCTCCCCACCCGACCCCAACGTAGACGCTTCCTCTG--ACTGCAGCACAGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756769 56 - 1017659 GCCTGGCTCCCCACCCGACCCCAACGTAGACGCTTCCTCTG--ACTCCAGCACAGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247493 56 - 110113093 GCCTGGCTCCCCACCCGACCCCAGCGCAGACGCTTCCTCCG--ACTCCAGCACAGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966809 56 - 92844088 GCCTGGCTCCCCACCCAACCCCAACGCAGACGCCTCCTCTG--ACTCCAGCACAGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614358 56 + 96509753 GCCTGGCTCCCCACCCAACCCCAACGCAGACGCCTCCTCTG--ACTCCAGCACAGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069812 56 - 16982598 GCCTGGCTCCCCACCCAACCCCAACGCAGACGCCTCCTCTG--ACTCCAGCACAGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913219 56 - 3785965 GCCTGGCTCCCCACCCGACCCCAACGCAGACGCCTTCTCTG--ACTCCAGCACAGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585187 56 - 90373283 GCCTGGCTCCCCACCCAACCCCAACGCAGACGCCTCCTCTG--ACTCCAGCACAGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460326 56 + 6149316 GCCTGGCTCCCCACCCGACCCCAATGCAGACGCCTCCTCTG--ACTCCAGCACAGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693223 56 - 5823884 GCCTGGCTCCCCACCCGACCCCAACGTAGATACCTCCTCTG--ACTCCAGCACAGCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400280 56 + 159171411 GCATGGCTCCCCACCTGACCCCCATATAGCCGCCTCCTCTG--ACTCCAGCACAGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521160 56 + 16356641 GCCTGGCTCCCCACCCGACCCCCACGTAGCCGCCTCCTGTG--ACTCCAGCACAGCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367454 53 + 1231380 GCCTGGCTCCCCACCCCACCCCCACGTA---GCCTCCTCTG--ACTCCGGCACAGCCC i cebCap1.NW_016107870v1 C 0 I 26 s aotNan1.NW_018500483v1 1929491 56 + 11732439 GCCTGGCTCCCCACCCGACCCCCACGTAGCCGCCTCCTCTG--ACTCCAGCACAGCCC i aotNan1.NW_018500483v1 I 110 I 26 s otoGar3.GL873542 22145463 26 + 22939663 --CTGGCTGCCCAATTTA---------------------------TCCAGCACAG--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094518 47 + 182113224 TCCTGGTTCCCC---TGACCC------AGATGCCCCCAGTG--TTTACAGCCTAGACA i mm10.chr2 I 1 C 0 s canFam3.chr24 47072845 56 + 47698779 CCCCGGCCCCGACCCCGACCCGGACACACGGCCTGGGTCTG--ACGGCAGCACGGCCG i canFam3.chr24 I 2 C 0 s dasNov3.JH567899 89894 50 + 555560 -CCCAGC------CCCGACCTCCACGCGGACACACTGTGTGCAGCTCCAGC-CAGCCC i dasNov3.JH567899 C 0 C 0 a score=236736.000000 s hg38.chr20_KI270871v1_alt 7200 48 + 58661 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCCTGCCA s panTro5.chr20 65577042 48 + 66533130 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCCTGCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346292 48 + 62195757 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCCTGCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756825 48 - 1017659 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCCTGCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247549 48 - 110113093 CCGTGGTCCCTACGGGAACCGAGTCCCCGCCAGCCGGGTCGCTTGCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966865 48 - 92844088 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCTTGCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614414 48 + 96509753 CAGTGGTCCCTAGGAGAACCGAGCCCCCGCCAGCCGGGTCGCTTGCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069868 48 - 16982598 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCTTGCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913275 48 - 3785965 CAGTGGTCCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCTTGCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585243 48 - 90373283 CAGTGGTCCCTATGGGAACCGAGCCCCTGCCAGCCGGGTCGCTTGCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460382 48 + 6149316 CAGTGGTTCCTACGGGAACCGAGCCCCCGCCAGCCGGGTCGCTTGCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693279 48 - 5823884 CAGTGGTCCCTACGGGAACCAAGCCCCCGCCAGCCGGGTCGCTTGCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400336 26 + 159171411 --ATAGGCCCTACAGGAGCTGA-----------------TGCTTG--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521216 26 + 16356641 --ACGGGCCCTACAGGAGCCGA-----------------CGCTTG--- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22145489 7 + 22939663 --------------------GGGCCCC--------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094565 27 + 182113224 TGTAAGTCTCCTCAGGAACAAACCACC--------------------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47072901 9 + 47698779 CCGTGGGTC--------------------------------------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89944 36 + 555560 ----GGGCTGCCCGGAGCCCGAGGACCCCACACACAGCCT-------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929547 26 + 11732439 I e cebCap1.NW_016107870v1 367507 26 + 1231380 I a score=1130479.000000 s hg38.chr20_KI270871v1_alt 7248 102 + 58661 CCACGTGCCTGTGTTCTGAGCCAGGAT-----GGGGGT--GGGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG s panTro5.chr20 65577090 102 + 66533130 CCACGTGCCTGTGTTCTGAGCCAGGAT-----GGGGGT--GGGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346340 102 + 62195757 CCACGTGCCTGTGTTCTGAGCCAGGAT-----GGGGGT--GGGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACTTGCCAAGACCAGCTGACACCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756873 102 - 1017659 CCACGTGCCTGTGTTCTGAGCCAGGAT-----GGGGGT--GGGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247597 102 - 110113093 CCACATGCCTGTGTACTGAACCAGGAT-----GGGGGT--GGGGGGCTCCGCAG-TGAGTGAGGGTCCCTGTGTCCACACCAGCCACCTGCCAAGACCAGCTGACACCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91966913 102 - 92844088 CCACGTGCCTGTGTTCCGAGCTAGGAT-----GGGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614462 102 + 96509753 CCACGTGCCTGTGTTCCGAGCTAGGAT-----GGGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16069916 102 - 16982598 CCACGTGCCTGTGTTCCGAGCTAGGAT-----GGGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913323 102 - 3785965 CCACGTGCCTGTGTTCCGAGCTAGGAT-----GGGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585291 102 - 90373283 CCACGTGCCTGTGTTCCGAGCTAGGAT-----GGGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460430 102 + 6149316 CCACGTGCCTGTGTTCCGAGCTAGGAT-----GGGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693327 101 - 5823884 CCACATGCCCGTGTTCCGAGCTAGGAT------GGGGT--GAGGGTCTCAGCAG-TGAGTGAGGGTCCCTGTGTCCACACCATCCACCTGCCAAGACCAGCTGACACCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400362 96 + 159171411 CCACGTGCCTGTGTTACAAGCCAGGAT-----GGGAGT--GGGGGTCTCAGCAG-GGAGTGAGGGTCCCTGTGTCCACACCATCTACCTGCTGAGACCAGCTGA------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521242 96 + 16356641 CCACGTGCCTGTGTTACAAGCCAGGAT-----GGGGGT--GGGGGTCTCAGCAG-GGAGTGAGGGTCCCTGTGTCCACACCATCTACCTGCCCAGACCAGCTGA------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367533 98 + 1231380 CCACGTGCCTGTGTTACAAGCCAGGAT-----GGGGGTGGGGGGGTCTCAGCAG-GTAGTGAGGGTCCCTGTGTCCTCACCATCTACCTGCCCAGACCAGCTGA------ i cebCap1.NW_016107870v1 I 26 C 0 s aotNan1.NW_018500483v1 1929573 102 + 11732439 CCATGTGCCTGTGTTACAAGCCAGGAT-----GGGGGT--GGGGGTCTCAGCAG-GGGGTGAGGGTCCCCGTGTCCACACCATCTACCTGCCCAGACCAGCTGACACCAG i aotNan1.NW_018500483v1 I 26 I 8 s otoGar3.GL873542 22145496 85 + 22939663 ---------------CTGGACCCCAGC-----AGGACC--AGGGGTCACGAAGC-TGAGCGAAAGTCCCTGTGTCCATACCAGCCACCCACCCAGACCAGCTGCCCCA-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094592 107 + 182113224 CCATGTACCTTCATCATGAGGCACAACACACCAGGAAG--GTACCTTTAGGTAGCTGGGGGAAAGGTCCTGGGTTCACACTACCCACTTGCCCAGA-AAGATAATGTCAG i mm10.chr2 C 0 C 0 s canFam3.chr24 47072910 101 + 47698779 CCGCACGCCCGTGGT--GAGCCAGGAC-----CGGGAG--GGGCGTCACGGCGGCTGAGTGAGGGTCCCGGTGCCCACCCCGTCCACCTGCCCTGACCTGGGGGTGCCGG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 89980 78 + 555560 --------CTGGGCTTGGTACCAGGGC-----TGGGA---GAGTCTCTCGGCAG-CCCG-GCGTGTCCTTGCATG-----GGGCCACCTGCCCGGACCCAG--------- i dasNov3.JH567899 C 0 C 0 a score=397725.000000 s hg38.chr20_KI270871v1_alt 7350 86 + 58661 CGGGGTCCTGCCATGCGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCGGAGGCA-------CAGGTCCCACCAGACTCACAGAGCCCAGGTCA s panTro5.chr20 65577192 86 + 66533130 CGGGGTCCTGCCATGCGGGGTGC-AGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCAGACTCACAGAGCCCAGGTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346442 86 + 62195757 CGGGGTCCTGCCATGCGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCAGACTCACAGAGCCCAGGTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 756975 86 - 1017659 CGGGGTCCTGCCATGCGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCAGACTCACAGAGCCCAGGTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247699 86 - 110113093 CGGGGTCCTGCCACGCGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGACA-------CGTGTCCCACCGGACTCACAGAGCCCAGGACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967015 86 - 92844088 CGGGGTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCGGACTCACAGAGCCCAGGTCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614564 86 + 96509753 CGGGGTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCGGACTCACAGAGCCCAGGTCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16070018 86 - 16982598 CGGGCTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCGGACTCACAGAGCCCAGCTCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913425 86 - 3785965 CAGGGTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCGGACTCACAGAGCCCAGGTCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585393 86 - 90373283 CGGGGTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCGGACTCACAGAGCCCAGGTCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460532 86 + 6149316 CAGGGTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGCAG-----GCAGAGGCA-------CGGGTCCCACCAGACTCACAGAGCCCAGGTCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693428 86 - 5823884 CGGGGTCCTGCCATGTGGGGTGC-GGGCTCCACCTCCAAAGGGGAG-----GCAGAGGCA-------CGGGTCCCACCGGACTCACAGAGCCCGGGTCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400458 24 + 159171411 --------------------------------------------------------------------------CACCAGACTCACAGGA-ACAGGCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521338 24 + 16356641 --------------------------------------------------------------------------CACCAGACTCACAGGG-CCAGGCCG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367631 24 + 1231380 --------------------------------------------------------------------------CACCAGACTCACAGGG-CGGGGCCG i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22145581 88 + 22939663 -TGGGTCCTGCCCTGCTGGCTGC-AAGCCTCACATCCAAAGGGCAGTGTGAGGTGTGGCA-------CTGACCCCACTGGA-TAACTGTG-CCAGGTGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094699 87 + 182113224 -CTGGTCCTGCCAGGGAAAGTACAAAGCTGTGTCC---AGAACCAG-----ACAGAAACATGTCCACTGACTCCTGCTAGACTGGCTGAATCCAAG--- i mm10.chr2 C 0 C 0 s canFam3.chr24 47073011 50 + 47698779 CGGGATCCTGGCCTACAGGTGGC---------------------AG-----GCGGCGGCC-------TGGCCTTCCC------------GCCCAG---- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 90058 17 + 555560 -------------------CAGC-GCCCTGCACCCCC-------------------------------------------------------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929675 8 + 11732439 I a score=864203.000000 s hg38.chr20_KI270871v1_alt 7436 85 + 58661 GGCA--GCAGAGGGGCGCCA-GG-AGCCGAGCT------CCCCATCAA-GCTTCGCAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG s panTro5.chr20 65577278 85 + 66533130 GGCA--GCAGAGGGGCGCCA-GG-AGCCGAGCT------CCCCATCAA-GCTTCGCAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346528 85 + 62195757 GGCA--GCAGAGGGGCGCCA-GG-AGCCGAGCT------CCCCATCAA-GCTTCGCAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757061 85 - 1017659 GGCA--GCAGAGGGGCGCCA-GG-AGCCGAGCT------CCCCATCAA-GCTTCGCAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247785 85 - 110113093 GGCA--GCGGAGGGGCGCCA-GG-AGCCAAGCT------CCCCATCAG-GCTTCGCGGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACATGGCAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967101 85 - 92844088 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCT------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614650 85 + 96509753 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCT------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16070104 85 - 16982598 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCT------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913511 85 - 3785965 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCT------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585479 85 - 90373283 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCT------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGTAGCCCAGGGACGTGGCAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460618 85 + 6149316 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCT------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693514 85 - 5823884 GGCA--GCAGAGGGGCACCA-GG-AGCCGAGCA------CTCCCTCAG-GCTTCACAGAGCAGG-CCCCTCACCCAGCAGCCCAGGGACGTGGCAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400482 85 + 159171411 GGCA--GCAGAGGGGTGCTG-GG-AGCCAAGCT------CCCGCTCAT-GCTTCGAAGAGCAGG-CCCCTCAGCCAGCAGCCCAGGGACGTGGCAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521362 84 + 16356641 GGCA--GCCGATGGGTGCTG-GG-AACCAAGCT------CCC-CTCAT-GCTTCGCAGAGCAGG-TCCCGCAGCCAGCAGCCCAGGGACGTGGCAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367655 86 + 1231380 GGCA--GCAGAGGGGTGCTG-GG-AGCCAAGCT------CCCCCTCAT-GCTTCGAAGAGCAGGCCCCCGCAGCCAGCAGCCCAGGGATGTGGCAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1929683 85 + 11732439 GGCA--GCAGAGGGGTGCTG-GG-AGCCAAGCT------CCCCCTCAT-GCTTCGCAGAGCAGG-CCCCTCAGCCAGCAGTCCAGGGACGTGGCAGG i aotNan1.NW_018500483v1 I 8 I 215 s otoGar3.GL873542 22145669 67 + 22939663 GGCATCTCAGGGGGGCATGA-GG-AAGCCTGCA------CCCCCTCAGCACTTTACAGAGCAGG-CCCCT-----------CCAGGG---------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094786 74 + 182113224 ---G--ATAGATAGACTCTG-GGAAGCCAGGCTTGCTCCCCTCCCCAC-ACTT----------A-GCATTTAGACAAGAGCCCAGGGATAGG----- i mm10.chr2 C 0 I 7 s canFam3.chr24 47073061 71 + 47698779 ---------GAGGGGCCCGA-GG-GGCTGGATG------CCCAGGC---GCCTCGCGGGCAGGG-ACGCGAGCCCCGCAGCCCTGGGACCTG----- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 90075 62 + 555560 ---------------CGCTGCTG-AGCC--GCC------TGCTCCCAT-GC---ACAGAGCTTC-CTCCCCACCCGGCAGTCC------GTGGCAGC i dasNov3.JH567899 C 0 C 0 a score=2694015.000000 s hg38.chr20_KI270871v1_alt 7521 349 + 58661 CAATGATT-GC-------GGAACA-ACTTCCTAAGCACGACCC----------TACACTG------GACAG--GCTGCGGCTGCCCCAGGCCAGGGAACAGAGATGCCACC-------CCGTGACC----TG---CCAGGTGAGCAC-CCCAGGATGGGCGGG--------------------GAGGGTCTTCAAGGGCAGAGACTGCTCCTCACTCCCACCGCA-------CCCCAGGC------ACCTTCCAGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCCCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGTGCTCGCCCGTGGGGGAGGGCGTGGGAGGCACAGGCAAG---GACCCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA s panTro5.chr20 65577363 349 + 66533130 CAATGATT-GC-------GGAACA-ACTTCCTAAGCACGACCC----------TACACCG------GACAG--GCTGCGGCTGCCCCAGGCCAGGGAACAGAGATGCCACC-------CCGTGACC----TG---CCAGGTGAGCAC-CCCAGGATGGGCGGG--------------------GAGGGTCTTCAAGGGCAGAGACTGCTCCTCACTCCCACCGCA-------CCCCAGGC------ACCGTCCAGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCCCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------TGGGT-----GGGTGCTCGCCCGTGGGGGAGGGCGTGGGAGGCACAGGCAAG---GACCCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346613 349 + 62195757 CAATGATT-GC-------GGAACA-ACTTCCTAAGCACGACCC----------TACACCG------GACAG--GCTGCGGCTGCCCCAGGCCAGGGAACAGAGATGCCACC-------CCGTGACC----TG---CCAGGTGAGCAC-CCCAGGATGGGCGGG--------------------GAGGGTCTTCAAGGGCAGAGACTGCTCCTCACTCCCACCGCA-------CCCCAGGC------ACCGTCCAGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCCCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGTGCTCGCCCGTGGGGGAGGGCGTGGGAGGCACAGGCAAG---GACCCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757146 347 - 1017659 CAATGATT-GC-------GGAACA-ACTTCCTAAGCACAACCC----------TACACTG------GACAG--GCTGCGGCTGCCCCAGGCCAGGGAACAGAGATGCCACC-------CCATGACC----TG---CCAGGTGAGCAC-CCCAGGATGGGCGGG--------------------GAGGGTCTTCAAGGGCAGAGACTGCTCCTCACTCCCACCGCA-------CCCCAGGC------ACCTTCCAGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCTGGGG----------------CGGGT-----GGGTGCTCACCCGT-GGGGAGGGCGTGGGAGGCACAGGCAAG---GACCCCCCGGACACATGGGGAAGAGACGGG------------GGA-----------------GGGTG-GGGAGCCACAGAGCTTACCGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109247870 348 - 110113093 TAACGATT-GC-------GGAACA-ACTTCCTAAGCGCGAGCC----------TGCACTG------GACAG--GCTGCGGCTGCCCCAGGCCAGGGAACAGAGAGGCCACC-------CCATTACC----TG---CCAGGGGAGCAC-CCCAGGATGGG-GGG--------------------GAGGGTCTTCAAGGGCAGAGACTGCTCCTCACTCCCACCGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACATCCCTCATCACA----GGCATC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGCGCTCGCCCGTGGGGGAGGGCGTGGGAGGCACAGGCAAG---GACCCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967186 352 - 92844088 TAATGATT-GC-------GGAACA-ACTTCCTAAGCACAGCCC----------TGCACTG------GACAG--GCTGCGGCGGCCCCAGGCCAGGGAACAGAGACGCCACC-------CCATTACC----TG---ACAGGTGAGCAC-CCCAGGACGGGCAGG--------------------GAGGGCCTTCAAGGGCAGAGACCGCTCCTCCCTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGCGCTCGCCCATGGGGGAGGGCATGGGAGGCACAGGCAGGCAAGGACCCCCGGACACATGGGGAAGAGGCGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95614735 352 + 96509753 TAATGATT-GC-------GGAACA-ACTTCCTAAGCACAGCCC----------TGCACTG------GACAG--GCTGCGGCGGCCCCAGGCCAGGGAACAGAGACGCCACC-------CCATTACC----TG---ACAGGTGAGCAC-CCCAGGACGGGCAGG--------------------GAGGGCCTTCAAGGGCAGAGACCGCTCCTCCCTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGCGCTCGCCCATGGGGGAGGGCATGGGAGGCACAGGCAGGCAAGGACCCCCGGACACATGGGGAAGAGATGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16070189 352 - 16982598 TAATGATT-GC-------GGAACA-ACTTCCTAAGCACAGCCC----------TGCACTG------GACAG--GCTGCGGCGGCCCCAGGCCAGGGAACAGAGACGCCACC-------CCATTACC----TG---ACAGGTGAGCAC-CCCAGGACGGGCAGG--------------------GAGGGCCTTCAAGGGCAGAGACCGCTCCTCCCTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGCGCTCGCCCATGGGGGAGGGCATGGGAGGCACAGGCAGGCAAGGACCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913596 352 - 3785965 TAATGATT-GC-------GGAACA-ACTTCCTAAGCACAGCCC----------TGCACTG------GACAG--GCTGCGGCGGCCCCAGGCCAGGGAACAGAGACGCCACC-------CCATTACC----TG---GCAGGTGAGCAC-CCCAGGACGGGCAGG--------------------GAGGGCCTTCAAGGGCAGAGACCGCTCCTCCCTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CATGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGCGCTCGCCCATGGGGGAGGGCATGGGAGGCACAGGCAGGCAAGGACCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585564 302 - 90373283 TAATGATT-GA-------GGAACA-ACTTCCTAAGCACAGCCC----------TGCACTG------GACAG--GCTGCG----------------------------------------------------------------GCAC-CCCAGGACGGGCAGG--------------------GAGGGCCTTCAAGGGCAGACACCGCTCCTCCCTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------TGGCCGCCC-------------CACATCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CGGGT-----GGGCGCTCGCCCATGGGGGAGGGCGTGGGAGGCACAGGCAGGCAAGGACCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5460703 352 + 6149316 TAATGATT-GC-------GGAACA-ACTTCCTAAGCACAGCCC----------TGCACTG------GACAG--GCTGTGGCGGCCCCAGGCCAGGGAACAGAGACGCCACC-------CCATTACC----TG---GCAGGTGAGCAC-CCCAGGACGGGCAGG--------------------GAGGGCCTTCAAGGGCAGAGACCGCTCCTCCCTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CAGCAGCCC-------------CACGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------CAGGT-----GGGCGCTCGCCCATGGGGGAGGGCATGGGAGGCACAGGCAGGCAAGGACCCCCGGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693599 352 - 5823884 TAATGATT-GC-------AGAACA-ACTTCCTAAGCACGGCCC----------TGCACTG------GACAG--GCTGCGGCTGCCCCAGGCCAGGGAACAGAGACGCCACC-------CCATTACC----TG---GCAGGTGAGCAC-CCCAAGACGGGCAGG--------------------TAGGGTCTTCAAGGGCAGAGACTGCTCCTCACTCCCACTGCA-------CCCCAGGC------ACCTTCCGGAAGCCCC---------------AGACC--------------------CGGCAGCCC-------------CACGTCCCTCACCACA----GGCGTC--C-------------------CAGGA------------GGAGGGCCGGGG----------------TGGGT-----GGGCGCTCGCCCATGGGGGAGGGCGTGGGAGGCACAGGCAGGCAAGGACCCCCAGACACATGGGGAAGAGACGGG------------GGA----------------GGGGTG-GGGAGCCACAGAGCTTACCGGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400567 327 + 159171411 TAACAACT-TC-------GAAACA-GCCTCTCACGCATGACCC----------TGCACTGGCAAT-GGGGG--GCTGCAGCTGCCCCAGGCCAGGGGACAGAGAC-CCACC-------CCGTTACC----TG---GCAGGTG-GCAT-CCCAGGAT-GGCGGG----------------------GGGTCCTCGAGGGCAGAGACTTCTCTTCTCTCCCACCGCA-------CCCTAGCC------AGCTTCCGGATG-CCC---------------AGACC--------------------CGGCCACCC-------------CGCG-CCCTTACCACA----GGCGTC--C-------------------CAGGA------------CGAGGGCC-GGG----------------TGGGT-----GGGCACCGGCCCCTGGGGGA-GGCGTGGAAAGCACAGGCAGGCAGGGCCCCTTGGAAAGGTGGGGAAGAGATGGG------------GGA----------------GGGGTG-G--------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521446 311 + 16356641 TAACAACT-TC-------GGAACA-GCCTCCCACGCACAGCCC----------TACACTGGCAATGGGGGG--GCTGCAGCTGCCCCAGGCCAGGGGACAGAGAC-CCACC-------CCGTTACC----TG---GCAGGTG-GCCT-CCCAGGAT---------------------------------------GGGCGGAGACTGCTCTTCACTCCCACCGCA-------CCCTAGCC------AGCTT-CGGACG-CCC---------------AGACC--------------------CAGCCGCCC-------------CATG-CCCTTACCACA----GGCGTC--C-------------------CAGGA------------CGAGGGCC-GGG----------------CGGAT-----GGGCATGGGCCCCTGGGGGA-GGCGTGGGAAACACAGGCAGGCAGGGCCCCTCGGAAGCATGGGGAAGAGACGGG------------GGA----------------GGGGTG-G--------------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 367741 320 + 1231380 TGACAACT-TC-------AGAACA----------GCACGACCC----------TGCACTGGCAATAGGGGG--GCTGCAGCTGCCCCAGGCCAGGGGACAGAGAC-CCACC-------CTGTTACC----TG---GCAGGTG-GCAT-CCCAGGATGGGCGGG----------------------GGGTCCTTGAGGGCAGAGACAGCTCTTCGCTCCCACCGCA-------CCCTAGCC------AGCCTCCAGATG-CCC---------------CGACC--------------------CGGCTGCCC-------------CACG-CCCTTACCACA----GGCGTC--C-------------------CAGGA------------CGAGGGCT-GGG----------------CGGGT-----GGGCACTGGCCCCTGGGGGA-GGCGTGGGAAGCACAGGCAGGCAGGGCCCCTCGGAAATGTGGGGAAGAGACGGG------------GGA----------------GGGGTG-G--------------------- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22145736 373 + 22939663 TACCGCTTGGT-------GAAGCT-ATTCCCT------------------------GCTA------ACAGG--GCTGTGGCTGCCCCAAGCCAGGG-ACAGAGGCACCA-C-------CTGTTACC----TGGCTGCAGGCTAGCAC-CCCAGAA------GG--------------------TGGGGTCCTCACTGGCAGAGACCACTCCTCACTCCAGC-----------ACCCAGAA------GCCTTCC-GAAGCCTC---------------AACCCATGGTGGCCCAATGCTGCTGCAGAGGCCT-------------AGTGGCCCCCAGTAGA----GGAGGC--CAGAGGAGACCTGGGCCCCTCAGGAGTTGG-------GGAGGGCTGGGG----------------CAGGC-----GGGCAC-CACCATCGGGGAAGGGTGTGGGAGGCACAGGCAGGCAGGGACCACTGGACACGCGGGGAAGAGTTGGG------------GAC----------------AGGCAGCAGGGACCACGGAACGTACCAGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181094867 444 + 182113224 CACTATTT-GTCTCCTAAGTAGAA-ATTTTCCATACACTTCCTATGTTCTTGGTGCTAAA------GAGGG--GATTTAGCTGCTCCTGG-AAGAGGCTAGAGATACTACCCCACCCTCCATTACCTTGGTA---GCAGGTATACAT-CCCAGTGAAAG-AGT--------------------GGAAATCCTCACTGACAGAAACTAGTCCTCACTCCCTCAGCATTTAGCTCTCCAGGTTCCCCAACCTCCTTGAAGATCCCAGTGTCTGTGCAAAGGACC--------------------TGTACACCCTTCCCGGGGATGGCAAATCTGCTGCCTCAACTGAGCATT--T-------------------TGGGAGCAGGGTGTCCTGGAAGGACTGGG----------------TTGGT-----AGTCATTAGCCCTCAGGGAAGGGTGTGG-AGGTACAGGCAGGCAGGGGCCACT-GACACGCGGGGAAGACAGAGGA-GTGGCAGGGCGGA----------------GAGCAG-GGGAGCCACGGAACATACCAGA i mm10.chr2 I 7 C 0 s canFam3.chr24 47073132 253 + 47698779 ----------------------------------------CCC----------GCCACCT------CGCGG--GCCCCAGAAGTCTCCTGCCTA-------------CGCC-------CCGCGCCC----CG---GCTGCTGAACA---------------------------------------GGGCCCTCCC-GGCTGACAGGGCGCCT--------------------CCCAGGGC------A------------------------------GGGCC--------------------T--CAGCCC-------------GG------------------GGTCCC--C-------------------CAGGA------------GGAGGGCCGGGC----------------CAGGC-----TGGCCCTC-------GGGGAAGCCACTGG-GTCGCGGGCAGGCAGGGACACACGGACACACGGGGAGGAGACAGA------------GGAGCGGAGAGCGGGAAGCGGGGAG-GGGAGCCACGGAACGTACCGGA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 90137 368 + 555560 ----------------------CACACCTACTGTGC---GCCA----------GGCACTG------AAGGGTATCTGTGGCTGCCCCAGGGGAGGG-CCAGAGACACG--C-------ATGTCACC----TG---GCTGACCTGTGCGCCCAGGAAGGGCAGGTGCATCCCCAGGGAATGGGCGGCAGTCTCCTCGGG-GGGGACAGTGCCTCGATCCCACAGCC-------GCCCGGGC-----------------GCCTC---------------GGACCGTGAG---------------GGGCAAATC-------------CGCACGTAGGGCCCTG----GGAAGCAAC-------------------CAGGA-CTGG-------CGAGGGCCTGGGTCTCCCCTCTCACCGCCAGGCCGCCGGGCCACGGGCCTCAGGAAGGGGGTGGGGGCGCCACACGGA--------------GACACGGGGAGAAGGGACGGGGCGTGG------GGC----------------GGAGCA-GGGGGCCACAGAACATGCCACA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1929768 215 + 11732439 I a score=2725509.000000 s hg38.chr20_KI270871v1_alt 7870 209 + 58661 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gccttcagggccag-cacctcat-ccccaaagagagggcagacgagagagggg-cccgagaagggcagtaacagggattaaagcactt--gggggCAGC---GGG--TGTCCAGAT--GGGTggagtggagggt--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGGC----- s panTro5.chr20 65577712 209 + 66533130 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gccttcagggccag-cacctcat-ccccaaagagagggcagacgagagagggg-cccgagaagggcagtgacagggattaaagcactt--gggggCAGC---GGG--TGTCCAGAT--gggtggggtggagggt--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGGC----- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61346962 209 + 62195757 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gccttcagggccag-cacctcat-ccccaaagagagggcagacgagagagggg-cccgagaagggcagtgacagggattaaagcactt--gggggCAGC---GGG--TGTCCAGAT--gggtggggtggagggt--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGGC----- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757493 210 - 1017659 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gccttcagggccag-cacctcatcccccaaagagagggcagacgagagagggg-cccgagaagggcagtaacagggattaaagcactt--gggggCAGC---GGG--TGTCCAGAT--GGGTGGGGTGgagggt--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGAGGGC----- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248218 207 - 110113093 GAGC-CC--GGAGGC-TCCCGCGT--GTcctcacctggagt-tc-gccttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccgagaagggcagtaacagggattaaagcactT--GGGGGCAGC---GGG--TGTCCAGAT--GGGTGGGGTGgagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGTGGGC----- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967538 207 - 92844088 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccaagaagggcagtaacagggattaaagCGCTT--GGGGGCAGC---GGG--TGTCCAGAT--GGGTGGGGTGgagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGCC----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615087 207 + 96509753 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccaagaagggcagtaacagggattaaagCGCTT--GGGGGCAGC---GGG--TGTCCAGAT--gggtggggtggagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGCC----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16070541 207 - 16982598 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccaagaagggcagtaacagggattaaagCGCTT--GGGGGCAGC---GGG--TGTCCAGAT--GGGTGGGGTGgagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGCC----- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2913948 207 - 3785965 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccaagaagggcagtaacagggattaaagCGCTT--GGGGGCAGC---GGG--TGTCCAGAT--GGGTGGGGTGgagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGCC----- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89585866 207 - 90373283 GAGC-CC--GGAGGC-TCCCGCGT--GTcctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agtgggcagacgagagagggg-cccaagaagggcagtaacagggattaaagcgctT--GGGGGCAGC---GGG--TGTCCAGAT--GGGTGGGGTGgagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGCC----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461055 207 + 6149316 GAGC-CC--AGAGGC-TCCCGCGT--gttctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccaagaagggcagtaacagggattaaagCGCTT--GGGGGCAGC---GGG--TGTCCAGAT--gggtggggtggagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGCC----- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4693951 207 - 5823884 GAGC-CC--GGAGGC-TCCCGCGT--gtcctcacctggagt-tc-gctttcagggccag-cacctcat-ccccaa--agagggcagacgagagagggg-cccaagaagggcagtaacagggattaaagCGCTT--GGGGGCAGC---GGG--TATCCAGAT--GGGTGGGGTGgagggc--gggagggagagagagaaagagagaggctgagacgaga---ACGTGGAGCGGGC----- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57400894 203 + 159171411 GAGC-CC--AGAGGC-TCCCGGGT--GTCCTCACCTGGAGT-TC-GCTTTCAGGGCCAG-CGACTCAT-CCCCAAAGAGAGGGCAGAC--GAGAGGGG-CCCAGGAAGGGCAGTAACAGGGGTTAAAGCAGGT--GGGGGCCGA---GGG--TGTCCAGAT------gggggggagggc--gggagggagagagagaaagagagaagCTGAGACGAGA---AGGTGGATCGGGC----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521757 204 + 16356641 GAGC-CC--AGAGGC-GCCCGAGT--GTCCTCACCTGGAGT-TT-GCTTTCAGGGCCAG-AGACTCAT-CCCCAAAgagggggcagac--gagagggg-cccgggaagggcagtaacaggggttaaagcaggt--gggggccga---ggg--tgtccagat--g---gggggggagggc--gggagggagagagagaaagagagaagctgagacgaga---aggtggagcgggc----- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 368061 202 + 1231380 GAGC-CC--AGAGGC-TCCCGAGT--GTCCTCACCTGGAGT-TC-GCTTTCAGGGCCAG-CGACTCAT-CCCCAAAGAGGGGGCAGAC--GAGAGGGG-CCCGGGAAGGGCAGTAACAGGGGTTAAAGCAGGT--GGGGGCCGA---GGG--TGTCCggat-------ggggggagggc--gggagggagagagagaaagagagaagctgagaccaga---aggtggagcgggc----- i cebCap1.NW_016107870v1 C 0 I 80 s aotNan1.NW_018500483v1 1929983 202 + 11732439 GAGC-CC--AGAGGC-TCCAGAGT--GTCCTCACCTGGAGT-TC-GCTTTCAGGGCCAG-TGACTCAT-CCCCAAAGAGAGGGCAGAC--CAGAGGGG-CCCAGGAAGGGCAGTAACAGGGGTTAAAGCAGGT--GGGGACCGA---GGG--TGTCCAgat-------ggggggagggc--gggagggagagagagaaagacagaagctgagacgaga---aggtggagcgggt----- i aotNan1.NW_018500483v1 I 215 C 0 s otoGar3.GL873542 22146109 200 + 22939663 GAGC-CC--AGAGGC--CCCGTGT--GTCCTCACCTGGATT-CA-GCTTTCAGGGCCAG-CACCTCCT-CCCCAAAGACAGAGCAGACGAGAAAAGGG-CCCGAGAAGGGCAGTGACAGTGATTAAAGCACTT--GGGGGCGGC-AAGAG--TGTCCAGAT-----------GAGGGGG--CagagggagagagagagagagagagGCTGAGACAAGA---GCCATCGGCAGC------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181095311 211 + 182113224 GAGC-CA--GGGGGC-TCCCTCGTGGGTCCTCACCTTGAGT-CCTGCTTTCAGGGTCAG-CACCTCAT-CCCAAAAGACAGAGCAGACGAGAAAGGGG-CCCAAGAAGGGCAGTAACAGTGATTAAAGCACTT--GGGGGCAGC---AAGATTTTCCAGAT--------GGGGGCAGAA--GAGGAAGAGAGAGAGAGAGAGAAAGGCTGAGACGAGACTCACGCAGAGAATGC----- i mm10.chr2 C 0 I 1 s canFam3.chr24 47073385 214 + 47698779 GAGC-CCGGGGGGGC-TCCCGTGT--GTcctcacctggagtctt-gctttcagggtcagccacctcct-ccccaaagacaga-cggacgtgaaagggg-cccaagaagggcagtgacaagattaaaggCACTTGGGGGGGCAGGCAAGAG--TGTCCAAAT------TGGGGGGAGGGC--AGga--gagagagagagagagagagGCTGAGACGAGGGTCGCGGGGAGGGGGA----- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 90505 223 + 555560 GAGCGCC--GCTGGCAGCCCGCGC--GTGCTCACCTGCCGT-CCTGCCTTCA-GCTCAG-C--CTCAT-CC---AAGAGAGAGCAGGCAAGAGAGGGGCCCCGGGGAGGGCAGTGGC-GGGGTTAAAGCACTCGGGGGGGCAGGCAAGAG--TTGCCAGAGTGGgggagaggggagggcaggggagggagagagagagagagagaggCTGAGACTAGAATTGCTGGGAGGGGGGACCCC i dasNov3.JH567899 C 0 C 0 a score=313240.000000 s hg38.chr20_KI270871v1_alt 8079 97 + 58661 CGGGCTGGGGCAGCG------------------------------------AGCACGA----------------GGGGC--CGTGAGGC--ACGG--GGC---GGGTTCCGGCG--TCGCTCCCAGC------A----AGGGCGTGGGGC-----CCTGCCA--CGCGGAAGCCGTC s panTro5.chr20 65577921 97 + 66533130 CGGGCTGGGGCAGCA------------------------------------AGCACGA----------------GGGGC--CGTGAGGC--ACGG--GGC---GGGTTCCGGCG--TCGCTCCCAGC------A----AGGGCGTGGGGC-----CCTGCCA--CGCGGAAGCCGTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347171 97 + 62195757 CGGGCTGGGGCAGCG------------------------------------AGCACGA----------------GGGGC--CGTAAGGC--ACGG--GGC---GGGTTCCGGCG--TCGCTCCCAGC------A----AGGGCGTGGGGC-----CCTGCCA--CGCGGAAGCCGTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757703 97 - 1017659 CGGGCTGGGGCAGCG------------------------------------AGCACGA----------------GGGGC--CGTGAGGC--ACGG--GGC---GGGTTCCGGCG--TCGCTCCCAGC------A----AGGGCGTGGGGC-----CCTGCCA--CGCGGAAGCCGTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248425 97 - 110113093 CGGGCTGGGGCAGCG------------------------------------AGCACGA----------------GGGGC--CGTGAGGC--ACGG--GGC---GGGCTCCGACG--TCGCTCCCAGC------A----AGGGCATGGGGC-----CCCGCCA--CGCGGAAGCCGTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967745 85 - 92844088 GGGCGGGGGGCGTCG------------------------------------AGCACGA-----------------GGGC--CCTGAGGC--ACGG--GGC----ATTTCCGGCG--TCGCTCTCAGC------A----AGGGCATGGGGC-----CCGGCTG--CGC---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615294 85 + 96509753 GGGCGGGGGGCGTCG------------------------------------AGCACGA-----------------GGGC--CCTGAGGC--ACGG--GGC----ATTTCCGGCG--TCGCTCTCAGC------A----AGGGCATGGGGC-----CCGGCTG--CGC---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16070748 85 - 16982598 GGGCGGGGGGCGTCG------------------------------------AGCACGA-----------------GGGC--CCTGAGGC--ACGG--GGC----ATTTCCGGCG--TCGCTCTCAGC------A----AGGGCATGGGGC-----CCGGCTG--CGC---------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914155 85 - 3785965 GGGCGGGGGGTGTCG------------------------------------AGCACGA-----------------GGGC--CCTGAGGC--ACGG--GGC----ATTTCCGGCG--TCGCTCTCAGC------A----AGGGCATGGGGC-----CCGGCTG--CGC---------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586073 80 - 90373283 GGGT--GGGGCGTCA------------------------------------AGCACGA-----------------GGGC--CCTGAGGC--ACGG--GGC----ATTTCCGGCG--TCACTCTCAGC------A----AGGGCGTGGGGC-----CCCGCTG--------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461262 85 + 6149316 GGGCGGGGGGCGTCG------------------------------------AGCACGA-----------------GGGC--CCTGAGGC--ACGG--GGC----ATTTCCAGCG--TCGCTCTCAGC------A----AGGGCATGGGGC-----CCGGCTG--CGC---------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694158 85 - 5823884 CGGGCGGGGGCGTCG------------------------------------AGCACAA-----------------GGGC--CCTGAGGC--ATGG--GGC----ATTTCCAGCG--TCGCTCTCAGC------A----AGGGCGTGGGGC-----CCCGCTG--CGT---------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401097 81 + 159171411 --AGGCGGGGCGTCG------------------------------------AGGGAGG-----------------G-TG--CATGAGGC--ACTG--AGC----AGC------------CCCCCAGC------A----AGGGCGTGGGGC-----CAGGCCT--CAGGGAGGGGTC- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15521961 80 + 16356641 --gggcggggcgtcg------------------------------------agggagg-----------------gCTC--CGTGGGGC--CCTG--AGC----AGC------------CCCCCAGC------A----AGGGC--GGGGT-----CGGGCCC--GGGGGAGGGGTC- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1930185 81 + 11732439 --gggcggggcatgg------------------------------------agggagg-----------------gCGC--CATGAGGC--ACTG--AGC----AGC------------CCCCCAGC------A----AGGGCGTGGGGC-----CAGGCCT--CGGGGAGGGGC-- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22146309 117 + 22939663 TAAGCTACGGCGGCA------------------------------------AGCAAGAAATTGCACCAGACTGAGGGGC--CACGTGGC--AGGGTAGCC----AGGTCCGGGT--CCTGGGGCAGCTGGGTTT----AGGGTGAGGGTA-----GCTGGCA--CAGGGCAGGG--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181095523 101 + 182113224 AAAGCTACGGCAACA------------------------------------AGCGCGA----------------GGAGCTGCAAGAGGC--CAGA--AGC----CTCCTGGGCAACTCGATCCCAGT------C----AAGGTGCAAGGG-----TCAGACAGTCAGGGCAGCGTG- i mm10.chr2 I 1 C 0 s canFam3.chr24 47073599 67 + 47698779 CAAGACGCCGCATCC------------------------------------GGCCGGG-----------------GGGC--CTCGGGCG--GACG--GGC------TCAGGGTG--TGGCACGCGGC------G----GGGGCC--------------------------------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 90728 149 + 555560 AAAGCTACGGCAACACACACAGAACCGCATGGGCCCAGGAGCTCGGACCCCAGCGCGA----------------GAGGC--CTGGAGGCGGGCGG--GGCCGGGGGTTCAGGGGAGGCGGCTCCACC------GCCTCAGGCCACGGGGCACCCTCCTGGGG--CGGAGAGGAGGAC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 368263 80 + 1231380 I a score=1054551.000000 s hg38.chr20_KI270871v1_alt 8176 140 + 58661 ---GGGAAGCCTCGCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----CCAAGGGTGCC-CATTGTGG-------GGGGCACA------GTGCT-------CATCCCC--------------ACA----------GCCACTCCCAGCCTCAGGGCCA---GCAGCAGGGGCGGGGGA----------------------------GGC-AGTG s panTro5.chr20 65578018 140 + 66533130 ---GGGAAGCCTCGCGTCCACCTGGGACAGCACCAAGGTTCCGCCCAAATCACAG----CCAAGGGTACC-CATTGCGG-------GGGGCACA------GTGCT-------CATCCCC--------------ACA----------GCCACTCCCAGCCTCAGGGCCA---GCAGCAGGGGCGGGGGA----------------------------GGC-AGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347268 140 + 62195757 ---GGGAAGCCTCGCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----CCAAGGGTACC-CATTGCGG-------GGGGCACA------GTGCT-------CATCCCC--------------ACA----------GCCACTCCCAGCCTcagggcca---gcagcaggggcggggga----------------------------ggc-agtg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757800 140 - 1017659 ---GGGAAGCCTCGCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----CCAAGGGTGCC-CATTGTGG-------GGGGCACA------GTGCT-------CATCCCC--------------ACA----------GCCACTCCCAGCCTCAGGGCCA---GCAGCAGGGGCGGGGGA----------------------------GGC-AGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248522 140 - 110113093 ---AGGAAGCCTCGAGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----CCAAGGGTGCC-CATTGTGG-------GGGGCACA------ATGCT-------CATCCCC--------------ACA----------GCCACTCCCAGCCTcagggcca---gcagcaggggcggggga----------------------------ggc-agtg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967830 167 - 92844088 ----GGAAGCCTCTCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----GCGAGGGTGCC-CATTGTGG-------GGGGCACA------GTGTC-------CATCCCC--------------ACA----------ACCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAGGCAGTGACAGGAGAACGACGCGGCCCCGGC-AGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615379 167 + 96509753 ----GGAAGCCTCTCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----GCGAGGGTGCC-CATTGTGG-------GGGGCACA------GTGTC-------CATCCCC--------------ACA----------ACCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAGGCAATGACAGGAGAACGACGCGGCCCCGGC-AGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16070833 167 - 16982598 ----GGAAGCCTCTCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----GCGAGGGTGCC-CATTGTGG-------GGGGCACA------GTGTC-------CATCCCC--------------ACA----------ACCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAGGCAGTGACAGGAGAACGACGCGGCCCCGGC-AGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914240 167 - 3785965 ----GGAAACCTCTCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----GCGAGGGAGCC-CATTGTGG-------GGGGCACA------GTGTC-------CATCCCC--------------ACA----------ACCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAGGCAGTGACAGGAGAACGACGCGGCCCCGGC-AGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586153 158 - 90373283 -------------TCCTCCACCTGGGACAGCACTGAGGTTCCGCCCAAATCACAG----GCGAGGGTGCC-CATTGTGG-------GGCGTACA------GTGTC-------CATCCCC--------------ACA----------ACCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAGGCAGTGACAGGAGAATGACGCGGCCCCGGC-AGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461347 167 + 6149316 ----GGAAGCCTCTCGTCCACCTGGGACAGCACCGAGGTTCCGCCCAAATCACAG----GCGAGGGTGCC-CATTGTGG-------GGGGCACA------GTGTC-------CATCCCC--------------ACA----------ACCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAGGCAGTGACAGGAGAACGACGCGGCCCCGGC-AGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694243 167 - 5823884 ----GGAAGCCTCTCGTCCACCTGGGACAGCACCGAGGTTCCACCCAAATCACAG----GCGAGGGTGCC-CATTGTGG-------GGGGCACA------GTGTC-------CATCCCC--------------ACA----------GCCACTCCCAGCCTCAGGGCCA---ACAGCAGGGGCGGGGGAggcagtgacaggagaatgacgcggccctggc-agtg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401178 135 + 159171411 ---AGGAAGGCTCACGTCCACCTGCGGCAGCACCGAGAGTCCACCTAAATCACAG----CTGA-GGTGCC-CATTGTGA-------GG-GCACA------GTGCC-------CA-CCCC--------------CCA----------GCCAACCCCAGCCTCCGGGCCG---GCAGCA--GGCGGGGGA----------------------------GGC-AGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15522041 136 + 16356641 ---GGGAAGGCTCGCGTCCACCTGCGGCAGCGCCGAGAGTCCACCCAAATCACAG----CTGA-GGTGCC-CATTGTGG-------GG-GCACA------GTGCC-------CATCCCC--------------CCA----------GCCACCCCCAGCCTCCGGGCCG---GCAGCA--GGCGGGGGA----------------------------GGC-AGTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 368343 136 + 1231380 ---GGGAAGGCTCGCGTCCACTTGCGGCAGTGCCGAGAGTCCACCCAAATCACAG----CTGA-GGTGCC-CATTGTGG-------GG-GCACA------GTGCC-------CTTCCCC--------------CCA----------GCCACCCCCAGCCTCTGGGCCG---GCAACA--GGCGGGGGA----------------------------GGC-AGTG i cebCap1.NW_016107870v1 I 80 C 0 s aotNan1.NW_018500483v1 1930266 135 + 11732439 ---GGGAAGGCTCGCGTCCTCCTGCGGCAGCGCCGAGAGTCCACCCAAATCACAG----CTGA-GGTGCC-CGTTGTGG-------GG-GCACA------GTGCC-------CG-CCCC--------------CCA----------GCCACCCCCAGCCTCCGGGCCG---GCAGCA--GGCGGGGGA----------------------------GGC-AGTG i aotNan1.NW_018500483v1 C 0 I 65 s otoGar3.GL873542 22146426 111 + 22939663 ---GAGGAGCCT--------CCCCAGGCTGTCCTGAG--------------------------------C-CACTGATA-------GG-GCCTA------GTCCT-------CATCCTCTCCTACCAACAGTGATA----------CCTGCTCCCACTTGCA----------CTGCATAAGTGAAGTG----------------------------GACGAGTG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181095624 136 + 182113224 ---GAGAA---------------GAGACAAGA---AGCCTCCAGACCCATCACCA----TCAGGG----C-AGTCTTGGTCCACCTGGGGCACAGCCCTGGTGTC-------CATAACC--------------AAA----------GGGACTCCCAGCCCCAGGGTCACAGGAAATAGAGCTGTCAGAGG--------------------------GGC-AGAC i mm10.chr2 C 0 I 4 s canFam3.chr24 47073666 79 + 47698779 -----GAGGACGCG---------GGGGCAGCCCCGTGGACCC-CCCAGACC----------------GCC-CA--GCTG-------GGCACGC-------GTCTC-------CCTCTCC--------------AC----------------------CCTGACGGCGA---GC--------------------------------------------------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 90877 157 + 555560 GGGAGGAAGGGGCGGGGGC-CCTGGTCCATGGCCACGCGGCCCCCCGGACCCCGGGGGCCTGAGGAGGCTGCAGAAAGG-------GGGCCGTG------GCGCCAGGGGCGCGCCCCC--------------GCAGCAGGAGTGTGCCGGCCCCACGCGCCCCGCCC---GCAGCCTGCG-----------------------------------TCC-ACTG i dasNov3.JH567899 C 0 C 0 a score=35882.000000 s hg38.chr20_KI270871v1_alt 8316 4 + 58661 GCAG s panTro5.chr20 65578158 4 + 66533130 GCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347408 4 + 62195757 gcag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757940 4 - 1017659 GCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248662 4 - 110113093 gcag i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91967997 4 - 92844088 GCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615546 4 + 96509753 GCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071000 4 - 16982598 GCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914407 4 - 3785965 GCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586311 4 - 90373283 GCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461514 4 + 6149316 GCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694410 4 - 5823884 gcag i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401313 4 + 159171411 ACAG i calJac3.chr5 C 0 I 21 s saiBol1.JH378156 15522177 4 + 16356641 ACAG i saiBol1.JH378156 C 0 I 61 s cebCap1.NW_016107870v1 368479 4 + 1231380 ACAG i cebCap1.NW_016107870v1 C 0 I 61 s otoGar3.GL873542 22146537 4 + 22939663 CCAG i otoGar3.GL873542 C 0 I 93 s mm10.chr2 181095764 4 + 182113224 ATAG i mm10.chr2 I 4 I 10 s dasNov3.JH567899 91034 2 + 555560 GC-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1930401 65 + 11732439 I e canFam3.chr24 47073745 0 + 47698779 C a score=25086.000000 s hg38.chr20_KI270871v1_alt 8320 10 + 58661 CACT-GGGGGC s panTro5.chr20 65578162 10 + 66533130 CACT-GGGGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347412 10 + 62195757 cact-aggggc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757944 10 - 1017659 CACT-GGCGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248666 10 - 110113093 cgct-gggggc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968001 9 - 92844088 CAGT-GGGGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615550 9 + 96509753 CAGT-TGGGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071004 9 - 16982598 CAGT-GGGGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914411 10 - 3785965 CAGTGGGGGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586315 9 - 90373283 CAGT-GGGGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461518 9 + 6149316 CAGT-GGGGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694414 9 - 5823884 cagt-ggggg- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401338 10 + 159171411 CAGC-CGGGGC i calJac3.chr5 I 21 I 29 s mm10.chr2 181095778 9 + 182113224 CAGT-GAGGA- i mm10.chr2 I 10 I 8 s dasNov3.JH567899 91036 10 + 555560 CACT-TAGTCC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1930401 65 + 11732439 I e cebCap1.NW_016107870v1 368483 61 + 1231380 I e canFam3.chr24 47073745 0 + 47698779 C e otoGar3.GL873542 22146541 93 + 22939663 I e saiBol1.JH378156 15522181 61 + 16356641 I a score=742185.000000 s hg38.chr20_KI270871v1_alt 8330 95 + 58661 TGGCACC----AGCAGAGGCTAC---GCTGCCGACC-C--------------------------------AGCTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTCTTTGAGAGGATGAATGAG--CCCCTGGTGGT s panTro5.chr20 65578172 95 + 66533130 TGGCACC----AGCAGAGGCTAT---GCTGCCGACC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTCTTTGAGAGGATGAATGAG--CCCCTGGTGGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347422 95 + 62195757 tggCACC----AGCAGAGGCTAT---GCTGCCGACC-C--------------------------------AGCTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTCTTTGAGAGGATGAATGAG--CCCCTGGTGGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 757954 95 - 1017659 TGGCACC----AGCAGAGGCTAT---GCTGCTGACC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTCTTTGAGAGGATGAATGAG--CCCCTGGTGGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248676 95 - 110113093 tggCACC----AGCAGAGGCCAT---GCTGCCGACC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTCTTTGAGAGGATGAATGAG--CCCCTGGTGGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968010 92 - 92844088 -GGCACC----AGCAGAGGCCGT---GCTGCCCATC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGACGAACGGG--CCCCTAGTGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615559 92 + 96509753 -GGCACC----AGCAGAGGCCGT---GCTGCCCATC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGACGAACGGG--CCCCTAGTGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071013 92 - 16982598 -GGCACC----AGCAGAGGCCGT---GCTGCCCATC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGACGAACGGG--CCCCTAGTGGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914421 92 - 3785965 -GGCACC----AGCAGAGGCCGT---GCTGCCCGTC-C--------------------------------AACTCT----------TC-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGACGAACGGG--CCCCTAGTGGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586324 93 - 90373283 TGGCACC----AGCAGAGGCCGT---GCTGCCCATC-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGATGAACGGG--CCCCTAGTGGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461527 92 + 6149316 -GGCACC----AGCAGAGGCCGT---GCTGCCCATA-C--------------------------------AACTCT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGACGAACGGG--CCCCTAGTGGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694423 93 - 5823884 tggcacc----agcagaggccgt---gCTGCCCATC-C--------------------------------AACACT----------TT-------------------------CTGGGCCCTCGTCCGTTTTC--TTAGCCTC--TGAGAGGATGAACAAG--CCCCTAGTGGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401377 97 + 159171411 TGGCACC----AGCAGAGGCCAT---GCTGCGGACC-T--------------------------------GGCTCT----------CC-------------------------CTGGGCCCTGGTTCGATCTT--TTAGCCTCCCTGAGAGGATGAACGAGCCCCCCTGGTGGT i calJac3.chr5 I 29 C 0 s saiBol1.JH378156 15522242 94 + 16356641 TGGCACC----AGCAGACGCTGT---GCTGCCGACC-C--------------------------------GCCTCT-----------C-------------------------CTGGGCCCTGGTGCGATCTT--TTAGCCTCCCTGGGAGGAAGAACGAG--CCCCTGGTGGT i saiBol1.JH378156 I 61 C 0 s cebCap1.NW_016107870v1 368544 95 + 1231380 TGGCACC----AGCAGAGGCCAT---GCTGCCGACC-T--------------------------------GGCTTT----------CC-------------------------CTGGGCCCTGGTGCGATCTT--TTAGCCTCCCTGGGAGGATGAACAAG--CCCCTGGTGGT i cebCap1.NW_016107870v1 I 61 I 53 s aotNan1.NW_018500483v1 1930466 95 + 11732439 TGGCACC----AGCAGAGGCCGT---GCTGCCGACC-C--------------------------------GGCTCT----------CC-------------------------CTGGGCCCTGGTGCGATCTT--TTAGCCTCCCTGAGAGGGTCAACGAG--TCCCTGGTGGT i aotNan1.NW_018500483v1 I 65 C 0 s mm10.chr2 181095795 154 + 182113224 GGGTACC----CCTGGGCACAGTGAGGCTGCCAATC-CTCTCCTGTTTTACCTGCTCCAAAGCCAGGTGAAGCTCT----------TTTACCTTCACATGTCACATGTCTACACTAGAC---GGTCTCTTTTCAGCTAATCTTCTTAGTGACCAGGGTTTG--CCATCATTGGC i mm10.chr2 I 8 I 3 s canFam3.chr24 47073745 48 + 47698779 ---------------------------------GCC-C--------------------------------AGCTCT----------CT----------------------------GCCCCGCGCCAGCGCGC----AGCCTCGCTGAGGGGCAGT------------------ i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 91046 104 + 555560 TGCTTCCTCCGCGCAGGCCCCAC---GTGGCCAGCAGC--------------------------------GACCCTGGACGGGCAGCG-------------------------CTGGCTCCACAGCTGGTCTT--CGAGCCTC---CGGAGCGCTCTTGGG--CC---GGCGGC i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22146541 93 + 22939663 I a score=8725.000000 s hg38.chr20_KI270871v1_alt 8425 1 + 58661 T s panTro5.chr20 65578267 1 + 66533130 T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347517 1 + 62195757 T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758049 1 - 1017659 T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248771 1 - 110113093 T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968102 1 - 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615651 1 + 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071105 1 - 16982598 T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914513 1 - 3785965 T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586417 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461619 1 + 6149316 T i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694516 1 - 5823884 T i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401474 1 + 159171411 T i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1930561 1 + 11732439 T i aotNan1.NW_018500483v1 C 0 I 52 s mm10.chr2 181095952 1 + 182113224 C i mm10.chr2 I 3 C 0 s canFam3.chr24 47073793 1 + 47698779 C i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 91150 1 + 555560 T i dasNov3.JH567899 C 0 I 1 e cebCap1.NW_016107870v1 368639 53 + 1231380 I e otoGar3.GL873542 22146541 93 + 22939663 I e saiBol1.JH378156 15522336 0 + 16356641 C a score=173182.000000 s hg38.chr20_KI270871v1_alt 8426 27 + 58661 TTCTTGGTTGGTGTGGGCCGGAAGCAT s panTro5.chr20 65578268 27 + 66533130 TTCTTGGTTGGTGTGGCCCAGAAGCAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347518 27 + 62195757 TTCTTGGTTGGTGTGGCCCAGAAGCAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758050 27 - 1017659 TTCTTGGTTGGTGTGGGCCAGAAGCAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248772 27 - 110113093 CTCTTGGTTGGTTTGGGCCAGAAGCAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968103 27 - 92844088 CTCTTGGTTGGTTTGGGCCGGAAGCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615652 27 + 96509753 CTCTTGGTTGGTTTGGGCCGGAAGCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071106 27 - 16982598 CTCTTGGTTGGTTTGGGCCGGAAGCAT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914514 27 - 3785965 CTCTTGGTTGGTTTGGGCCGGAAGCAT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586418 27 - 90373283 CTCTTGGTTGGTTTGGGCCGGAAGCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461620 27 + 6149316 CTCTTGGTTGGTTTGGGCCGGAAGCGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694517 27 - 5823884 CTCTTGGTTGGTTTGGGCCAGAAGCCT i colAng1.NW_012114444v1 C 0 C 0 s mm10.chr2 181095953 23 + 182113224 CCTTTAGCTGATTTGG----GAAGCTG i mm10.chr2 C 0 C 0 s canFam3.chr24 47073794 23 + 47698779 ----GCCTTGGTTCGGGCCGAAGGCAG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 91152 27 + 555560 CTCGCGGGCAGTGTGGGCCCGAGGCGC i dasNov3.JH567899 I 1 C 0 e aotNan1.NW_018500483v1 1930562 52 + 11732439 I e cebCap1.NW_016107870v1 368639 53 + 1231380 I e otoGar3.GL873542 22146541 93 + 22939663 I e saiBol1.JH378156 15522336 0 + 16356641 C e calJac3.chr5 57401475 0 + 159171411 C a score=608356.000000 s hg38.chr20_KI270871v1_alt 8453 97 + 58661 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCATGA-CTCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAATGCAGCTCAGCCC----CACTCCATC--TCCCCG-- s panTro5.chr20 65578295 97 + 66533130 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCATGA-CTCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGCAGCTCAGCCC----CACTCCGTC--TCCCCG-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347545 97 + 62195757 TGCC-CATCTTTCCAGCTCAAGGCACTG--------ACCATGA-CTCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGCAGCTCAGCCC----CACTCCGTC--TCCCCG-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758077 97 - 1017659 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCATGA-CTTCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGCAGCTCAGCCC----CACTCCGTC--TCCCCG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248799 97 - 110113093 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA-CTCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGCGGCTCAGCCC----TACTCTGTC--TCCCCA-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968130 97 - 92844088 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA-CCCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGGAACTCAGCCC----CACTCCATC--TCCCCA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615679 97 + 96509753 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA-CCCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGGAACTCAGCCC----CACTCCATC--TCCCCA-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071133 97 - 16982598 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA-CCCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGGAACTCAGCCC----CACTCCATC--TCCCCA-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914541 97 - 3785965 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA-CCCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGGAACTCAGCCC----CACTCCATC--TCCCCA-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586445 95 - 90373283 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA---CCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAATGGAACTCAGCCC----CACTCCATC--TCCCCA-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461647 97 + 6149316 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCGTGA-CCCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGGAACTCAGCCC----CACTCCATC--TCCCCA-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694544 97 - 5823884 TGCC-CGTCTTTCCAGCTCAAGGCACTG--------ACCATGA-CTCCCCTTCTGTGGGAT-------GTGGG---G-------------------TGGC---------------T-----------G--------------------------GA---AAAACGGAACTCAGCCC----CACTCTATC--TCCCCG-- i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22146634 123 + 22939663 TGCT-GATCTTTGCAATTCAAGGCACCA--------ACCCTAA-TCCTCCCACCGTGGGACTGGGAGAGTGGA---GACCTGCATCCTTCTCCAATGGGC---------------T-----------G--------------------------GG---AAAACAGGGCTCAGCCC----AATTCTAAG--ACCCTG-- i otoGar3.GL873542 I 93 I 1 s mm10.chr2 181095976 117 + 182113224 TGCC-AGTCTTTGCAATTCAGGACACCA--------CCTATAAATTCTCTTTTTGTGGGAT-------GGGAG---A-------------------TGACAGTGCCATTCTCCAAT-----------G--------------------------GACAGAGAACGG-GTTCAGCCA----AATTCCACCCTTCCCTG-- i mm10.chr2 C 0 I 1 s canFam3.chr24 47073817 109 + 47698779 GGCC-ACCATGCTCGGTTCCAGACACCGGTGTCCGTGCCGAGG-CGCTC-------GGGGC-------GCAGGAGCG-------------------TGGC---------------CACCCGCACGGGG--------------------------AC---GGGGCAGCGCCCAGCCT----AAGTGCGGC--TCC----- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 91179 121 + 555560 GGCCACGTTTTTCCAG-TCAAG--------------GCCGCGA-CAGTCCT--CGTGGGGT-------CTGGG---G-------------------CGGC---------------G-----------GAGCAGGAGGTGCGCTGCCCTCATGGTGG---GGGGCGGGGCCCAGCCCGCGTCCCTGCGTC--CTTCCCTC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1930562 52 + 11732439 I e cebCap1.NW_016107870v1 368639 53 + 1231380 I e saiBol1.JH378156 15522336 0 + 16356641 C e calJac3.chr5 57401475 0 + 159171411 C a score=9100.000000 s hg38.chr20_KI270871v1_alt 8550 1 + 58661 C s panTro5.chr20 65578392 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347642 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758174 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248896 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968227 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615776 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071230 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914638 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586540 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461744 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694641 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15522336 1 + 16356641 C i saiBol1.JH378156 C 0 C 0 s dasNov3.JH567899 91300 1 + 555560 C i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181096093 1 + 182113224 I e aotNan1.NW_018500483v1 1930562 52 + 11732439 I e cebCap1.NW_016107870v1 368639 53 + 1231380 I e canFam3.chr24 47073926 0 + 47698779 C e otoGar3.GL873542 22146757 1 + 22939663 I e calJac3.chr5 57401475 0 + 159171411 C a score=227499.000000 s hg38.chr20_KI270871v1_alt 8551 47 + 58661 ACCCAAGC--CCCGCAG-TGTCTCGCCAGCT--GTCA-CC-C---GCAGTCCAGGAG s panTro5.chr20 65578393 47 + 66533130 ACCCAAGC--CCCGCAG-TGTCTCGCCAGCT--GTCA-CC-C---GCAGTCCAGGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347643 47 + 62195757 ACCCAAGC--CCCGCAG-TGTCTCGCCAGCT--GTCA-CC-C---GCAGTCCAGGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758175 46 - 1017659 ACCCAAGC--CCC-CAG-TGTCTCGCCAGCT--GTCA-CC-T---GCAGTCCAGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248897 48 - 110113093 ACCCAAGC--CCCCCAG-TGTCTCGCCAGCT--GTCACCC-C---ACAGTCCAGGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968228 45 - 92844088 ACCCAAGC--CCCCCAG-TGTCTCGCCCGCT--GTCA-CC------CTGTCCAGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615777 45 + 96509753 ACCCAAGC--CCCCCAG-TGTCTCGCCAGCT--GTCA-CC------CTGTCCAGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071231 45 - 16982598 ACCCAAGC--CCCCCAG-TGTCTCGCCAGCT--GTCA-CC------CTGTCCAGGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914639 45 - 3785965 ACCCAAGC--CCCCCAG-TGTCTCGCCAGCT--GTCA-CC------CTGTCCAGGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586541 47 - 90373283 ACCCAAGC--CCCCCAG-TGTCTCGCCAGCT--GTCA-CC-C---GCCGTCCAGGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461745 44 + 6149316 ACCCAAGC--CCCCC-G-TGTCTCGCCAGCT--GTCA-CC------CTGTCCAGGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694642 48 - 5823884 ACCCAAGT--CCCCCCG-TGTCTCGCCAGCT--GTCA-CCCC---ACCGTCCAGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401475 36 + 159171411 ACCCGAGC--CCCCCAG-CGTC------------TCA-TC-----GAAGTCCAGGAG i calJac3.chr5 C 0 I 16 s saiBol1.JH378156 15522337 36 + 16356641 ACCCGAGC--CCCCCAG-TGTC------------TCA-TC-----ACAGTCCAGGAG i saiBol1.JH378156 C 0 I 16 s otoGar3.GL873542 22146758 42 + 22939663 -CCCCAGC--CT--CAG-CATCTTGTCTGAG--TCCC-CC------CAGTTCAGGAA i otoGar3.GL873542 I 1 I 10 s mm10.chr2 181096094 48 + 182113224 ACAAGAGCAGTTTGTAG-ATATTCTCTAGGT--AATC-CT-----GGTATCTGGGAG i mm10.chr2 I 1 C 0 s canFam3.chr24 47073926 38 + 47698779 ---------ACCAGCGG-TG----GCCGGCTGAGTCG-CC-C---ACGGTCCCGAAG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 91301 52 + 555560 ACCCGAAC--GAGCCGGACGTCTGCTCGGCG-AGTCA-CT-CCCGAAGGCCCAGGAG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1930562 52 + 11732439 I e cebCap1.NW_016107870v1 368639 53 + 1231380 I a score=770233.000000 s hg38.chr20_KI270871v1_alt 8598 91 + 58661 GG------------GCAGCCAGGCG----TCCATCTCGGACCCCAGGTCCAAGGGGCCAGATTTACTCTGCAACATGTGGAT--------GGGGCACAGGGGG--------CCCAGAGAAGCC s panTro5.chr20 65578440 91 + 66533130 GG------------GCAGCCAGGCG----TCCATCTCGGACCCCAGGTCCAAGGGGCCAGATTTACTCTGCAACATGTGGAT--------GGGGCACAGGGGG--------CTCAGAGAAGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347690 91 + 62195757 GG------------GCAGCCAGGCG----TCCATCTCGGACCCCAGGTCCAAGGGGCCAGATTTACTCTGCAACATGTGGAT--------GGGGCACAGGGGG--------CCCAGAGAAGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758221 91 - 1017659 GG------------GCAGCCAGGCG----TCCATCTCGGACCCCAGGTCCAAGGGGCCAGATTTACTCTGCAACATGTGGAT--------GGGGCACAGGGGG--------CCCAGAGAAGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109248945 91 - 110113093 GG------------GCAGCCAGGCA----TCCATCTCAGACCCCACGTCCAAAGGGCCAGATTTACTCTGCAACATGTGGAT--------GGGGCACAGGGGG--------CCCAGAGAAGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968273 94 - 92844088 GGCACGGGCGTGAAGCAGCCAGGCA----TCCATCTCGGACTCCAGGTCCGAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CCGAGAGAAGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615822 94 + 96509753 GGCACGGGCGTGAAGCAGCCAGGCA----TCCATCTCGGACTCCAGGTCCGAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CCGAGAGAAGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071276 94 - 16982598 GGCACGGGCGTGAAGCAGCCAGGCA----TCCATCTCGGACTCCAGGTCCGAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CCGAGAGAAGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914684 94 - 3785965 GGCACGGGCGCGAAGCAGCCAGGCA----TCCATCTCAGACTCCAGGTCCGAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CCGAGAGAAGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586588 94 - 90373283 GGCATGGGCGCGAAGCAGCCAGGCA----TCCATCTCGGACTCCAGGTCCAAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CTGAGAGAAGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461789 94 + 6149316 GGCACGGGCGCGAAGCAGCCAGGCA----TCCATCTCGGACTCCAGGTCCGAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CCGAGAGAAGCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694690 94 - 5823884 GGCACGAGCGCAAAGCAGCCAGGCA----TCCATCTTGGACTCCAGGTCCAAGGGGCCAGATTTACTCTGCAACATGTGGAT-----------------GGGG--------CCGAGAGAAGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401527 89 + 159171411 GG------------GCAGGCAGGCA----TCCATCTTCAA--CCAGGTCCAAGAGGCTGGACTTACTCTGCAACATGTGGAT--------GGGGCGCTGGGGG--------TCCAGAGAAGCC i calJac3.chr5 I 16 C 0 s saiBol1.JH378156 15522389 89 + 16356641 GG------------GCAGGCAGGCA----TCCATCTCACA--CCAGGTCCGAGAGGCTGGACTGACTCTGCAACGTGTGGAT--------GGGGCGCTGGGGG--------TCCAGAGAAGCC i saiBol1.JH378156 I 16 C 0 s cebCap1.NW_016107870v1 368692 90 + 1231380 GG------------GCAGGCGGGCA----TCCATCTTGGA--CCAGATCCAAGAGGCTGGACTTACTCTGCAACGTGTGGAT--------GGGGCGCTGGGGGT-------TCCAGAGAAGCC i cebCap1.NW_016107870v1 I 53 C 0 s aotNan1.NW_018500483v1 1930614 88 + 11732439 GG------------GCAGGCAGGCA----TCCATCTCGGA--CCAGGTCCAAGAGGCTGGACTTACTCTGCAACATGTGGAT--------GGGGCGCTGGGG---------TCCAGAGAAGCC i aotNan1.NW_018500483v1 I 52 C 0 s otoGar3.GL873542 22146810 73 + 22939663 GG------------GTAGGTGAGCA----CCCCTCTGGGA--------TCAAGG------------TCTGCAAGGTATAGGG--------------CAGGAGGCAGCCTAGCTTAGAACAGCC i otoGar3.GL873542 I 10 C 0 s mm10.chr2 181096142 99 + 182113224 ------GGCACAA-GGAGTCAGGCAAATCTCCTTCTGAGACCTAAAGTCTATGA-GCCATATACACACTGTACCTTGTGGAC--------AGTTCACTTGGGG--------GAGGGACACACT i mm10.chr2 C 0 C 0 s canFam3.chr24 47073964 105 + 47698779 GGCGCGGACG----GAGGGCAGGCA----GGGGTCTCTGGCCCCAGGTC--AGGGGCTGGACTCGCTCTGCGGCCTGGGGACGGGTGCTCGGGGCATCCCGGG--------CTCAGAGGACCC i canFam3.chr24 C 0 I 142 s dasNov3.JH567899 91353 73 + 555560 --------------------GGGCG----TTCGGGGCGCGCCTGGGGTC--GGGGGCTGCATGTGCTCCGCAGGGCATGGGT-------------GCTGGGGG--------GTGGGAGGC--- i dasNov3.JH567899 C 0 C 0 a score=1724915.000000 s hg38.chr20_KI270871v1_alt 8689 216 + 58661 TAGCACCTCCTCAGGGTG------ATGTGTCGG------------GGGCTGGGGCTCAGCAGACGTAGAATTAACTTGTGAAAGGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCACCCC-A--------GCAGA------------------GCCCTTACACGAGTCCTGTCTCC-AATCTGCCCG--A-----------CCCACAGAA------------CCTC------------GGGGCCCGGGAGAGGGAACCAGGCTAAGCACC-TG----CACCCTTGGCCCACTTTGACCTTGGCAAA s panTro5.chr20 65578531 216 + 66533130 TAGCACCTCCTCAGGGTG------ATGCGTCGG------------GGGCTGGGGCTCAGCAGACATAGAATTAACTTGTGAAAGGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCACCCC-A--------GCAGA------------------GCCCTTACACGAGTCCTGTCTCC-AATCTGCCCG--A-----------CCCACAGAG------------CCTC------------GGGGCCCGGGAGAGGGAACCAGGCTAAGCACC-TG----CACCCTTGGCCCACTTTGACCTTGGCAAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347781 216 + 62195757 TAGCACCTCCTCAGGGTG------ATGCGTCGG------------GGGCTGGGGCTCAGCAGACATAGAATTAACTTGTGAAAGGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCACCCC-A--------GCAGA------------------GCCCTTACACGAGTCCTGTCTCC-AATCTGCCCG--A-----------CCCACAGAA------------CCTC------------GGGGCCCGGGAGAGGGAACCAGGCTAAGCACC-TG----CACCCTTGGCCCACTTTGACCTTGGCAAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758312 216 - 1017659 TGGCACCTCCTCAGGGTG------ATGCATCGG------------GGGCTGGGGCTCAGCAGACATAGAATTAACTTGTGAAAGGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCACCCC-A--------GCAGA------------------GCCCTTACACGAGTCCTGTCTCC-AATCTGCCCG--A-----------CCCACAGAA------------CCTC------------GGGGCCCGGGAGAGGGAACCAGGCTAAGCACC-TG----CACCCTTGGCCCACTTTGACCTTGGCAAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249036 214 - 110113093 TGACACCTCCTCA-GGTG------ATGCGTGGG------------GGGCTGGGGCTCAGCAGACATAGAATTAACTTGTGAAATGATC-TGATTTTC-----------------------TCTGTCCCCA---------------TCCTTCACCCC-A--------GCAGA------------------ACCCTTACATGAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCACAGAA------------CCTC------------GGGGCCTGGGAGAGGGAACCAGGCTAAGCACC-TG----CACCCTTGGCCCACCTTGACCTTGGCAAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968367 207 - 92844088 TGGGACCTCCTCAGGGTG------ACGCATGGG------------GGGCTGGGGCTCGGCAGACATAGAATTCACTTGTGAAATGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACGAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCGCAGAA------------CCTC-----------AGGGACCCGGGAGAGGGAACCAGGCTGAGCACC-TG----CACCCTTGGCCCACCTTGACCTTGGCAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95615916 207 + 96509753 TGGGACCTCCTCAGGGTG------ACGCATGGG------------GGGCTGGGGCTCGGCAGACATAGAATTCACTTGTGAAATGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACGAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCGCAGAA------------CCTC-----------AGGGGCCCGGGAGAGGGAACCAGGCTGAGCACC-TG----CACCCTTGGCCCACCTTGACCTTGGCAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071370 207 - 16982598 TGGGACCTCCTCAGGGTG------ACGCGTGGG------------GGGCTGGGGCTCGGCAGACATAGAATTCACTTGTGAAATGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACGAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCGCAGAA------------CCTC-----------AGGGACCCGGGAGAGGGAACCAGGCTGAGCACC-TG----CACCCTTGGCCCACCTTGACCTTGGCAAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914778 207 - 3785965 TGGGTCCTCCTCAGGGTG------ACGCATGGG------------GGGCTGGGGCTCAGCAGACATAGAATTAACTTGTGAAATGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACGAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCGCAGAA------------CCTC-----------AGGGGCCTGGGAGAGGGAACCAGGCTGAGCACC-TG----CACCCTTGGCCCACCTTGACCTCGGCAAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586682 207 - 90373283 TGGGACCTCCTCAGGGTG------ATGCATGGG------------GGGCTGGGGCTCGGCAGACATAGAATTAACTTGTGAAATGATCTTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACGAGTCCCGTCTCC-AATCTACCTG--A-----------CCCGCAGAA------------CCTC-----------AGGGGCCCGGGAGAGGGAACCAGGCTGAGCACC-TG----CACCCTTGGCCCACCTTGACCTTGGCAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5461883 207 + 6149316 TGGGACCTCCTCAGGGTG------ACGCATGGG------------GGGCTGGGGCTCGGCAGACGTAGAATTAACTTGTGAAATGATCCTGATTTTC-----------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACAAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCGCAGAA------------CCTC-----------AGGGGCCCGGGAGAGGGAACCAGGCTGAGCACC-TG----CACCCTTGGCCCACCTTGACCTTAGCAAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694784 205 - 5823884 TGGGACCGCCTCAGGGTG------ATGCATGGG------------GGGCTGGGGCTCGACAGACATAGAATTAACTTGTGAAATGATCTTGATTT-------------------------TCTGTCTCCA---------------TCCTTCAC-------------------------------------CCCTTACACGAGTCCTGTCTCC-AATCTGCCTG--A-----------CCCACAGAA------------ACTC-----------AGGGACCCGGGAGAGGGAACCAGGCTCAGCACC-TG----CACCCTTGGCCCACCTTGACCTTGGCAAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401616 214 + 159171411 TGG-ACCCCCTCAGACTG------ACACATGGG-----------TGGACTGGGGCTTGGCAGACACAGAATTAACTTGTGAAATTATCTGGATT--C-----------------------TCTGTCTCCA---------------CCCTTCACCCC-A--------GCAGA------------------GTCC-CACATGCGTCCCGACTCC-AACCTGCCTG--A-----------CCCACAGAA------------CCTC------------AGGGCCTGGGAGAGGGAATCAGGCGAAGCACCTTG----CACCCTTGGCCCACCTCGACCTTGGCAAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15522478 213 + 16356641 CGG-ATCCCCTCAGACTG------ACGCATGGG-----------TGGACTGGGGCTTGGCAGACACAGAACTAACTTGTGAAATGATCTGGATT--C-----------------------TCTATCTCCA---------------CCCTTCACTCC-A--------GCAGA------------------GTCC-CACACACGTCCCATCTCC-AACCTGCCTG--A-----------CCCACAGAA------------CCTC------------AGGGCCCGGGAGAGGGAACCAGGCTAAGCACC-TG----CACCCCTGGCCCACCTCGACCTTAGCAAA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 368782 210 + 1231380 TGG-ACCCCCTCACACTG------ACGCA-GGG-----------TGGACTGGGGCTTGGCAGACACAGAACTAACTTGTGAAATGATCCGGAT---------------------------TCTGTCTCCA---------------CCCTTCACCCC-A--------GCAGA------------------GTCC-CACACGCGTCCCGTCTCC-AGCCTGCCTG--A-----------CCCACAGAA------------CCTC------------AGGGCCCGGGAGAGGTAACCAGACTAAGCACC-TG----CACCCTTGGCCCACCTCGACCTTGGCAAA i cebCap1.NW_016107870v1 C 0 I 83 s aotNan1.NW_018500483v1 1930702 211 + 11732439 TGG-ACCCCCTCAGACTG------ATGCATGGG-----------TGGACTGGGGCTTGGCAGACACGGAACTAACTTGTGAAATGATCTGGATT--C-----------------------TCTGTCTCCA---------------CCCTTCACCCC-A--------GCAGA------------------GTCC-CACACGCGTCCCGTCTCC-AACCTGCCTG--A-------------CACAGAA------------CCTC------------AGGGCCCGGGAGAGGGAACCAGGCTGAGCACC-TG----CACGCTTGGCCCACCTCGACCTTGGCAAA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22146883 194 + 22939663 CGGGAAGTCAGCAAGAGG------ACGCACAGG-----------TGGATAGGAAGTCCTCAGACTCGAAAT----CTGTGAAATGATCATGATTTTC-----------------------TTT-------------------------TTAATACT-AAGAAAATGGCAGA------------------CCTTCTCCA----TCCCATCTCT-AACTTGCCTGTTA-----------CACACAGGA------------CCCT------------GGGGACCACCA-AGGGATCAGGGAGTGGGAAC-TG----------------ACCTTGACCTCAGCA-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096241 206 + 182113224 CAG-----CCTAAAGGCC------TTGAATACC-----------CAGGCAGATGCACACTGAACTTGAAAT----CCGTGAGATGGTCTTTCTTTACTTATAAGTGCTAGGACAACACAGTCTCTTTCCT---------------TTCTCTAC-CA-A--------GCAGA------------------GCTGACACTGGAGCCCCATCT---AACCAGCCTG--AGCAAATGGTACCTTGGAGAC------------CATC------------AGGGACCAGGAGAGAGAGAGAG----AGCTCT-CG--------------------------------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 91426 288 + 555560 AGGCACCCCGATGAGGGGTTGGAAGTGCATGGGCCACGCGCAAGTGGCCTGGTGTACACCAGACCCGAAGGC------TGGGACGACCTTGATGTTT-----------------------TTTAATCCTAGAAAAGCTCCTGCTGTCCCCCGCCCCGA--------GCAGAGGGCTCCCCTGAGAGTTGGCACCCACAGGTTCCCCGTCTCCTCACCTGCCTA--A----GTCCAAACCCAGGGCAGGCACACCTGCCCCTCCCACCCCGCGCGGGGGCCGCCGAGAGAG---CCGGGTCAGCACT-AGGGACAGCTCCCCGACAGCCTCGCTCT------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074069 142 + 47698779 I a score=721165.000000 s hg38.chr20_KI270871v1_alt 8905 113 + 58661 CAGGGAGAGGAGGCCAGCCAG--AATCTCCACCCAGGGGCGTGAGACAGAGAGGATGTCCCACCCTCCTC-GGAGGACGAGGGG---------------------------CCCTGG---TCTGTGCCACATGC--------------TCCAGACACTCT s panTro5.chr20 65578747 113 + 66533130 CAGGGAGAGGAGGCCGGCCAG--AATCTCCACCCAGGGGCGTGAGACAGAGAGGATGTCCCACCCTCCTC-GGAGGACGAGGGG---------------------------CCCTGG---TCTGTGCCACATGC--------------TCCAGACACTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61347997 113 + 62195757 CAGGAAGAGGAGGCCGGTCAG--AATCTCCACCCAGGGGCGTGAGACAGAGAGGATGTCCCACCCTCCTC-GGAGGACGAGGGG---------------------------CCCTGG---TCTGTGCCACATGC--------------TCCAGACACTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758528 113 - 1017659 CCGGGAGAGGAGGCCGGCCAG--AATCTCCACCCAGGGGCGCGAGACAGAGAGGATGTCCCACCCTCCTC-GGAGGACGAGGGG---------------------------CCCTGG---TCTGTGCCACATGC--------------TCCAGATACTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249250 113 - 110113093 CGGGGAGAGGAGGCCAGCCAG--AATCTCCAGCCAGGGGCGTGAGGCAGAGAGGATGTCCCACCCTGCCT-GGAGGACGAGGGG---------------------------CCCTGG---TCTGTGCCACGTGC--------------TCCAGACACTCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968574 114 - 92844088 CAGGGAGAGGAGGCTGGCCAG--AATCTCCACCCAGGGGCGCGAGGCAGAGAGGATGTCCCACCCTCCCT-GGAGGACAGGGGG--------------------------CCCCTGG---TCTGTGCCATGTGC--------------TCCAGATACTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616123 114 + 96509753 CAGGGAGAGGAGGCTGGCCAG--AATCTCCACCCAGGGGCGCGAGGCAGAGAGGATGTCCCACCCTCCCC-GGAGGACAGGGGG--------------------------CCCCTGG---TCTGTGCCATGTGC--------------TCCAGATACTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071577 114 - 16982598 CAGGGAGAGGAGGCTGGCCAG--AATCTCCACCCAGGGGCGCGAGGCAGAGAGGATGTCCCACCCTCCCC-GGAGGACAGGGGG--------------------------CCCCTGG---TCTGTGCCATGTGC--------------TCCAGATACTCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2914985 114 - 3785965 CAGGGAGAGGAGGCTGGCCAG--AATCTCCACCCAGGGGCGCGAGGCAGAGAGGATGTCCCACCCTCCCC-GGAGGACAGGGGG--------------------------CCCCTGG---TCTGTGCCATGTGC--------------TCCAGATACTCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89586889 113 - 90373283 CAGGGA-AGGAGGCCGGCCAG--CATCTCCACCCAGGGGCGCGAGGCAGAGAGGGTGTCCCACCCTCCCC-GGAGGACAGGGGG--------------------------CCCCTGG---TCTGTGCCATGTGC--------------TCCAGATACTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462090 113 + 6149316 CAGGGAGAGGAGGCTGGCCAG--AATCTCCACCCAGGGGCGCGAGGCAGAGAGGATGTCCCACCCTCCCC-GGAGGACAGGGGG--------------------------CCCC-GG---TCTGTGCCATGTGC--------------TCCAGATACTCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4694989 114 - 5823884 CAGGGAGAGGAGGCTGGCCAG--AATCTCCACCCAGGGGCGCGAGGCAGAGAGGATGTCCCACCCTCCCC-GGAGGACAGGGGG--------------------------GCCCTGG---TCTGCGCCACGTGC--------------TCCAGATACTCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401830 113 + 159171411 CGGGGAGAGGGGACTGGGCAGAAAATCTCCA-CCAGCGGCGTGAGGCAGAGAAGAT-TCAGACCCTCCCCTGGAGGATGAGGG----------------------------CCCTGG---TCTCCCCCACGTGC--------------TCCAGATGCCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15522691 91 + 16356641 CGGGGAGAGGGGACC-GGCCGGAAATCTCCA-CCAGT-GCACAAGGCAGAGGTG---TCCGACCCTCCCCTGGAGGACGAGGG----------------------------CCCTGG---TCTCCCCC-------------------------------- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1930913 114 + 11732439 CAGGGAGAGGGGACCAGGCAGAAAATCTCCA-CCAGTGGCTGGAGGCAGAGAGGATGTCCAACCCTTCCCTGGAGGATGAGGG----------------------------CCCGGG---TCTCCCCCGCATGC--------------TCCAGATGCCCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147077 65 + 22939663 ----------------------------------------CTGCCACAGAGCAGATGT-------------GAGGCACAGAGGG-------------------------AATGCTTG---GCCCTCCCACTTGC--------------TCCACAGACTGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096447 141 + 182113224 -AGAGAGGGCAGCAAGGTAGG--AATATCCTTGGAGGTATAGGAGG-GGCTAGGGCACCTTAACCTCCTCAGGAGGACTCTGGATACCCAAAGGCTATCAGGTAGCAAGGTCCCTCT---TCTCTTCTGCCAGCA------------TTCTGAATGCATT i mm10.chr2 C 0 I 6 s dasNov3.JH567899 91714 126 + 555560 -----GGAGGGGGCTGCTCTA--AGTGCCGCGCCCGCGGCCTGGGGCCAGGCGTCTCTTCCATTCACTCC-AGAGACCCTCGCC--------------------------ATCCCGAGACCCCCCGTCACGTGCAGCGCAGGCCCCCTTCCGGCCGCGCC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 368992 83 + 1231380 I e canFam3.chr24 47074069 142 + 47698779 I a score=2010856.000000 s hg38.chr20_KI270871v1_alt 9018 238 + 58661 -----------------------GGACCCAGAGCAGC----GGGAAGGCCAGAGGCCCACTT---------GGAGCTTTCACCCCAGCCGGCGTCGACTCAGG----------------CCAGCTGTGAGCTCGGGCTATGTGCCTGCAGCTGGAGGGAGCGCACTAACAGAGACCCCCTGCCTCCGAGAACCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCCCCCACCCCCGAGAAGC-CGCCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC s panTro5.chr20 65578860 238 + 66533130 -----------------------GGACCCAGAGCAGC----GGGAAGGCCAGAGGCCCACTT---------GGAGCTTTCACCCCAGCCGGCGTCGACTCAGG----------------CCAGCTGTGAGCTCGGGCTATGTGCCTGCAGCTGGAGGGAGTGCACTAACAGAGACCCCCTGCCTCCGAGACCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCCCCCACCCCCGAGAAGC-CGCCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348110 238 + 62195757 -----------------------GGACCCAGAGCAGC----GGGAAGGCCAGAGGCCCACTT---------GGAGCTTTCACCCCAGCCGGCGTCGACTCAGG----------------CCAGCTGTGAGCTCGGGCTATGTGCCTGCAGCTGGAGGGAGTGCACTAACAGAGACCCCCTGCCTCCGAGACCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCCCCCACCCCCGAGAAGC-CGCCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758641 238 - 1017659 -----------------------GCACCCAGAGCAGC----GGGAAGGCCAGAGGCCCACTT---------GGAGCTTTCACCCCAGCCGGCGTCGACTCAGG----------------CCAGCTGTGAGCTCGGGCTATGTGCCTGCAGCTGGAGGGAGTGCACTAACAGAGACCCCCTGCCTCCGAGACCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCCCCCACCCCCGAGAAGC-CGCCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249363 238 - 110113093 -----------------------GAACCCAGAGCAGC----CGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCAGCCGGCCTCGACTCAGG----------------CCAGCTGTGAGCTCGGGCTATGTGCCTGCAGCTGGAGGGAATGCGCTAACAGAAACCCCCTGCCTCCGAGACCCCTG-GGGCCAGACTTGTGGG-----CAGG-G--TAGGGGATCCCCCCGCCCTGAGAAGC-CGCCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968688 235 - 92844088 -----------------------CGAACCAGAACAGCGGGAGGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCGGCCGGC-CCGACTCAGG----------------CCAGCTGTGAGCTCAGGCTGTGTGCCTGCGGCTGGAGGGAGTGCGCTAACAGAAA-CCCCTGCCTCCGAGAGCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCC-----CCCCGAGAAGC-CACCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616237 235 + 96509753 -----------------------CGAACCAGAACAGCGGGAGGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCGGCCGGC-CCGACTCAGG----------------CCAGCTGTGAGCTCAGGCTGTGTGCCTGCGGCTGGAGGGAGTGCGCTAACAGAAA-CCCCTGCCTCCGAGAGCCCTG-GGGACAGACTTGTGGG-----CAGG-G--TGGGGGATCC-----CCCCGAGAAGC-CACCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071691 235 - 16982598 -----------------------CGACCCAGAACAGCGGGAGGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCGGCCGGC-CCGACTCAGG----------------CCAGCTGTGAGCTCAGGCTGTGTGCCTGCGGCTGGAGGGAGTGTGCTAACAGAAA-CCCCTGCCTCCAAGAGCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCC-----CCCCGAGAAGC-CACCTAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915099 235 - 3785965 -----------------------CGACCCAGAACAGCGGGAGGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCGGCCGGC-CCGACTCAGG----------------CCAGCTGTGAGCTCAGGCTGTGTGCCTGCAGCTGGAGGGAGTGCGCTAACAGAAA-CCCCTGCCTCCGAGAGCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCC-----CCCCGAGAAGC-CACCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587002 224 - 90373283 -----------------------CGACCCAGAACAGC----GGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCGGCCGGC-CCGACTCAGG----------------CCAGCTGTGAGCTCAGGCTGTGTGCCTGCAGCCGGAGGGAGTGCGCTAGCAGAAA-CCCCTGCCTCTGAGAGCCCTG-GGGCCAGACTTGTGGG-----C----------GGGATCC-----CCCCGAGAAGC-CACCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462203 235 + 6149316 -----------------------CGACCCAGAACAGCGGGAGGGAAGGCCAGAGGCCCACTC---------GGAGCTTCCACCCCGGCCGGC-CCGACTCAGG----------------CCAGCTGTGAGCTCAGGCTGTGTGCCTGCAGCTGGAGGGAGTGCGCTAACAGAAA-CCCCTGCCTCCGAGAGCCCTG-GGGCCAGACTTGTGGG-----CGGG-G--TGGGGGATCC-----CCCTGAGAAGC-CACCCAGCTACCC--GGATCCACAGTGCTGCAAAGTAAAACTGAATCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695103 231 - 5823884 -----------------------CGACCCAGAACAGT----GGGAAGGCCAGAGGCCCCCTC---------GGAGCTTTCACCCCGGCCGGC-CCGACTCAGA----------------CCAGCTGTGAGCTCGGGCTGTGTGCCTGCAGCCGGAGGGAGTGCACTAACAGAAA-CCCCTACCTCCAAGAGCCCTG-GGGCCAGACTTGTGGG-----TGGG-G--TGGGGGATCC-----CCCCGAGAAGC-CACCCAGCTGCCC--GGATCCACAGTGCTGCAAAGTAAAACCGAATCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57401943 238 + 159171411 -----------------------GGACCCAGAGCAGC----AGGAGCGCCAGAGGCCCCCTC---------AGAACTTTCACCTCGGCCAGCCTCAACTGTGG----------------CCAGCTGTGAGTTGGCTCTATGTGCCTGCAGCTGGAGGGGGTGCGCTCACAGAAACCCTCTGCCTCCGAGACCCCTG-GGGCCAGACCTGTGGTGGTGGGGGG-G--GAGGGGATCC-----ACTCAAGAAGCACCCCCAGCTG-CC--AGATCCACAGTGCTGCAGAGTAAAACCGAATCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15522782 208 + 16356641 -----------------------GGACCCAGAGCAGC----AGGAGCACCAGAAACCCCCTC---------AGAGCTTCCACCTCAGCCAGCCTCGACTGTGG----------------CCAGCTGGGAGTCCGGGC-GTGTGTGGGCAGCCGGAGGGGGTGTGTTCGCAGAAAGCCCCTGCCTCCAAGACCCTTG-GGGCCTGACCTGTGGT-----CAGG-T--GGGGGATCCC-----ACTCGAGAAGC-CCCCCAGCTG-CC--AGATCCACAGT----------------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369075 230 + 1231380 -----------------------GGACCCAGAGCAGC----AGGAGCTCCAGAGGCCCCCTC---------AGAGCTTTGACCTCGGCCATCCTCGACTGTGG----------------CCAGCTGCGAGTCCGGGC-GTGTGCCGGCAGCCGGAGGGGGTGCGCTTGCAGAAAGCCCCTGCCTCCGAGACCCTTG-GGGCCGGACCTGTGGT-----CAGG-T--GGGGGATCCC-----ACTGGAGAAGC-CCCCCAGCTG-CC--AGATCCACAGTGCTGCAGAGTAAAACC-AATTAC i cebCap1.NW_016107870v1 I 83 C 0 s aotNan1.NW_018500483v1 1931027 208 + 11732439 -----------------------GAACCCAGAGCAGC----AGGAGTGCCAGAGGCCC---------------------------------CCTCGACTGTGG----------------CCAGCTGCGAGTTCGGGCTGTGTGCCGGCAGCCGGAGGGGGTGCACTCACAGAAACCCCCTGCCTCCGAGACCCTTG-GGGCCGGACCTGTGGT-----GAGG-T--GGGGGATCCC-----ACTCGAGAAGT-CCCCCAGCTG-CC--AGATCCACAGTGCTGCAGAGTAAAACCGAATCAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147142 221 + 22939663 -----------------------------------------TGACAAACCGGAGCCTCTGCCTGCATCAAGTGAGCCCCTCCTCCCACCGGC-TGGCCCCTGGTTGTCCTCCCTGTCCACCACCAGAGTGACCAGGCT-TGTGCCTAGAGCAGAAGGA-----------------TCCCTGTC---AGAGTCCCCA-GGGCTGGGCTCCTGGG-----TGAGTG--AGGGGAACCC-----ACCCAAGAAAC-C-CCCAGCTGCCC--AGG-CCACAGTGCTGCAAAGTCAGCCCAAAGCAT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096594 170 + 182113224 -----------------------CCCACTAGAGTGAT----GGGA--------------------------GGGGCC----------------CCAGCTGGGA--------------------CTGCAAATTTCAGCAACATACCTGCAG------------AGCACACAGGAA---CCAGCCTCAGAGTTCCCTGTGGGGCAGGCCCATGGG-----CAGG-GTTTGGGAGGATG-----ATCCAAGAAGC-C------CTACCCCACAACCCCCAGTGCTG----------CCAAATCCC i mm10.chr2 I 6 C 0 s dasNov3.JH567899 91840 200 + 555560 GCCCAGGGTCCCCACCCCATGCCCGACCTAGAGCGGG----AGGGAGGCCA----------C-------------------------------CCTGCCCAAG----------------CCAGCTGCCA-CCCAGGCCGTGTGC--------------------TCAACAGAAG-TGCCCGTCTC-AGGGTCCCTG-GGGCTGGACTCGCAGG-----CAGG-G--TGGGGGAGCC------CCCGAGAAGC-CCCTCAGCCGCCC--CAATCCGCAGCGCTGCCAAGTAAGTCCAGAGCAC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074069 142 + 47698779 I a score=367014.000000 s hg38.chr20_KI270871v1_alt 9256 40 + 58661 -TGGGGAGGGGGTGAGCAGGAAGAGTGATTTAAGGGCCCAC s panTro5.chr20 65579098 40 + 66533130 -TGGGGAGGGGGTGAGCAGGAAGAGTGATTTAAGGGCCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348348 40 + 62195757 -TGGGGAGGGGGTGAGCAGGAAGAGTGATTTAAGGGCCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758879 40 - 1017659 -TGGGGAGGGGGTGAGCAGGAAGAGTGATTTAAGGGCCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249601 40 - 110113093 -TGGGGAGGGGGTGAGCAGGAAGAGTGATTTAAGGGCCCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968923 39 - 92844088 -TGGGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616472 39 + 96509753 -TGGGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071926 39 - 16982598 -TGGGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915334 39 - 3785965 -TGGGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587226 39 - 90373283 -TGTGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462438 39 + 6149316 -TGGGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695334 39 - 5823884 -TGGGGA-GGGGTGAGCAGGAAAAGTGATTTAAGGGCCCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402181 38 + 159171411 -TGGGA--GGGCTGAGTAGGAAAAGTGATTTAAGGACCCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15522990 31 + 16356641 ----------GCTGAGTAGGAAAGGTGACTTAAGGACCCAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369305 38 + 1231380 -TGGGA--GGGCTGAGTAGGGAAAGTGATTTAAGGACCCAC i cebCap1.NW_016107870v1 C 0 I 132 s aotNan1.NW_018500483v1 1931235 38 + 11732439 -TGGGA--GGGCTGAGTAGGAAAAGTGACTTAAGGACCCAC i aotNan1.NW_018500483v1 C 0 I 17 s otoGar3.GL873542 22147363 39 + 22939663 -GGGGTG-GGGTGGATGAGGAAGAGTGACCAGAGGACCCAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096764 27 + 182113224 -TGTGAGGAGGCTATAACTGAGAAGTGA------------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47074211 37 + 47698779 -TGGGGGGGCGCTGAGCACACAGGGACGT---AGGGCCCAC i canFam3.chr24 I 142 C 0 s dasNov3.JH567899 92040 40 + 555560 ATGGAGG-AGGGCAGGACACAGGGGCGGCGCGGAGGCCGAC i dasNov3.JH567899 C 0 C 0 a score=177414.000000 s hg38.chr20_KI270871v1_alt 9296 38 + 58661 ATCACCGCCAGGCGGGG--GTCTGG--ACCCGCA-GTCACACA s panTro5.chr20 65579138 38 + 66533130 ATCACCGCCAGGCAGGG--GTCTGG--ACCCGCA-GTCACACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348388 38 + 62195757 ATCACCGCCAGGCGGGG--GTCTGG--ACCCGCA-GTCACACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758919 38 - 1017659 ATCACCGCCAGGCGGGG--GTCTGG--ACCCGCA-GTCACACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249641 38 - 110113093 ATCACCGCCAGGCGGGG--GTCTGG--ATACGCA-GTCACACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968962 36 - 92844088 ATCACCGCCAGGCGGGG--GTCTGG--A--CACA-GTCACACG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616511 36 + 96509753 ATCACCGCCAGGCAGGG--GTCTGG--A--CACA-GTCACACG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16071965 36 - 16982598 ATCACCGCCAGGCGGGG--GTCTGG--A--CACA-GTCACACG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915373 36 - 3785965 AACACCGCCAGGCAGGG--GTCTGG--A--CACA-GTCACACG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587265 36 - 90373283 ATCACCGCCAGGCGGGG--GTCTGG--A--CACA-GTCACACG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462477 36 + 6149316 ATCACCGCCAGGCGGGG--GTCTGG--A--CACA-GTCACACG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695373 38 - 5823884 ATCACCGCCAGGCAGGG--GTCTGGACA--CACA-GTCACACG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402219 17 + 159171411 -------------------TTCTGG--A--CACA---CACTCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523021 7 + 16356641 -------------------TTCTGG--A--------------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22147402 35 + 22939663 ATCCTTGCCAGGCAGTG--G-CTGG--A--CACA-GCCCCAGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096791 30 + 182113224 -------CCCTGGGTGT--GCCAGG--ACACACA-GTTACTT- i mm10.chr2 C 0 C 0 s canFam3.chr24 47074248 28 + 47698779 ----------GGCGCGGCCGGCGGG--C--TCCA-GACACACA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 92080 32 + 555560 ---ATCACCGGGCAGGG--CTGGGG--A--CACAGGGCACA-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1931273 17 + 11732439 I e cebCap1.NW_016107870v1 369343 132 + 1231380 I a score=664479.000000 s hg38.chr20_KI270871v1_alt 9334 110 + 58661 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCACA--------TCTCCA--------TGACAGGTTGCGCACACGTGTGGG---------AGAGAGACCAGACG------GCCGTGCACACG-----------------GCAG-ACAC---CAGGG--TAGCAGCA s panTro5.chr20 65579176 110 + 66533130 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCACA--------TCTCCA--------TGACAGGTTGCGCACACGTGTGGG---------AGAGAGACCAGACA------GCCGTGCACACG-----------------GCAG-ACAC---CAGGG--TAGCAGCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348426 110 + 62195757 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCACA--------TCTCCA--------TGACAGGCTGCGCACACGTGTGGG---------AGAGAGACCAGACG------GCCGTGCACACG-----------------GCAG-ACAC---CAGGG--TAGCAGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 758957 110 - 1017659 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCACA--------TCTCCA--------TGACAGGTTGCACACACGTGTGGG---------AGAGAGACCAGACA------GCCGTGCACACG-----------------GCAG-ACAC---CAGGG--TAGCAGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249679 125 - 110113093 ATCACACAGTCACACTCG-GAAGCACA---------CACAAGGCCCTCACA--------TCTCCATGACAGGTTGACAGGTTGTGCACACGTGTGGG---------AGAGAGACCAGACG------GCCATGCACACG-----------------GCAG-ACAC---CA-GG--CAGCAACG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91968998 110 - 92844088 GTCACACA--------CG-GAAGCACA---------CACGAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCCAACGTGTGGG---------AGAGAGACCAGACG------GTTGTGTACACG-----------------GCAG-ACAC---CAGGG--CAGCGGCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616547 110 + 96509753 GTCACACA--------CG-GAAGCACA---------CACGAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCCAACGTGTGGG---------AGAGAGACCAGACG------GTTGTGTACACG-----------------GCAG-ACAC---CAGGG--CAGCGGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072001 110 - 16982598 GTCACACA--------CG-GAAGCACA---------CACGAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCTAACGTGTGGG---------AGAGAGACCAGACG------GTTGTGTACACG-----------------GCAG-ACAC---CAGGG--CAGCGGCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915409 110 - 3785965 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCCAACGTGTGGG---------AGAGAGAACAGACG------GTTGTGTACACG-----------------GCAA-ACAC---CAGGG--CAGCGGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587301 110 - 90373283 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCAAACGTGTGGG---------AGAGAGACCAGACG------GTGGTGCACGCG-----------------GCAG-ACAC---CAGGG--CAGCGGCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462513 110 + 6149316 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCCAACGTGTGGG---------AGAGAGACCAGACG------GTTGTGTACATG-----------------GCAG-ACAC---CAGGG--CAGCGGCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695411 110 - 5823884 GTCACACA--------CG-GAAGCACA---------CACAAGGCCCTCATG--------TCTCCA--------CAACAGGTTGTGCCCACGTGTGGG---------AGAGAGACCAGACG------GTTGTGCACATG-----------------GCAG-ACAC---CAGGG--AAGCGGCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402236 86 + 159171411 GTCACACA--------GG-GAAGCACAGGCAAGGCCCTTGAGGCCCTCACG--------CCCCCA--------CGACAGGTTGTGCACACACA-----------------------------------------------------------------G-ACAC---TAGGG--CGGCTGGG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15523028 98 + 16356641 -----------------------CGCAGGCAGGGCCCTTGAGGCCCTCACG--------CCCCCA--------TGA-AGGTTGTGCACACAGA--------------GCAGGACCAAACA------GCCCTGCACACA-----------------A-GG-ACAC---CAGGG--CAGCGGGG i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1931290 82 + 11732439 GTCACGCG--------GG-GAAGCACAGGCAAAGCCCTCAAGGCCCTCACG--------CCCCCA--------CGACAGGTTGTGCACACACA-----------------------------------------------------------------G-ACAC---CAGGG--CAGC---- i aotNan1.NW_018500483v1 I 17 C 0 s otoGar3.GL873542 22147437 143 + 22939663 CCTGCACA--------CA-GAGGC------------TCCTCGGCCTGCACGGTAGCCACTGCCCA--------CAACACAATGTGCACACGCAGAGGAGCAGGGCCAGAAAGACCAGATG------GC-GTGCACACGCAGACACACGCGTGCACACAG-ACACA--CAGGGGCCGGAGGCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096821 112 + 182113224 GCTGTACA--------TA-GAAGCACA---------CACAGGGCCC-CATGGTAGCCCTGCCCCA--------TGACACATGGTGTATACAC--------------AGAGAGAGCAAGGC------AAGGTGGGTACA-----------------GCAC-ACAC---CAGGG--CGGCTGGA i mm10.chr2 C 0 I 4 s canFam3.chr24 47074276 94 + 47698779 -GCGCACA--------CG-CGGGCACG---------CACAGG-----------------CCCCGA--------TGACACGCAGCGCACA-------G---------ACACGGACGGACCG------GCTCTGCTCGCG-----------------GCAACGCCC---CGGGG--CAGCGGGG i canFam3.chr24 C 0 I 5 s dasNov3.JH567899 92112 112 + 555560 CTCGTGCA--------AGAGCAGCACG---------CAGCAGGCACACACA--------T---GG--------GGCCACGCCACGCACA-----GTG---------AGCGGGGCCAGGCACGATGCGAGCCACACATG-----------------GCAA-GCGCGCCAAGGG--CAGCGGGA i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 369343 132 + 1231380 I a score=1188690.000000 s hg38.chr20_KI270871v1_alt 9444 93 + 58661 ---GGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGGTCCTTCCTTCAAACAGAAGCAAC-AGA---GAGTTA----------GTGGCCGC-CCACTC-AGCA--CCCATGA s panTro5.chr20 65579286 93 + 66533130 ---GGGGGCACTGACCTTGGAGACGGCTCCGGTGGGGGGTCCTTCCTTCAAACAGAAGCAAC-AGA---GAGTTA----------ATGGCTGC-CCACTC-AGCA--CCCATGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348536 93 + 62195757 ---GGGGGCACTGACCTTGGAGACGGCTCTGGCGGGGGGTCCTTCCTTCAAACAGAAGTAAC-AGA---GAGTTA----------GTGGCCGC-CCACTC-AGCA--CCCATGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759067 92 - 1017659 ---GGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGGTCCTTCCTTCAAACAGAAGCAAC-AGA----AGTTA----------GTGGCCAC-CCACTC-AGCA--CCCATGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249804 93 - 110113093 ---GGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGTTCCTTCCTTCAAACAGAAGCAAC-AGA---GAGTTA----------GTGGCTGC-CCGCTC-AGCA--CCCATGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969108 93 - 92844088 ---AGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAT-AGA---GAGTTA----------GTGGCCGC-CCGCTC-AGCA--CCCTTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616657 93 + 96509753 ---AGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAT-AGA---GAGTTA----------GTGGCTGC-CCGCTC-AGCA--CCCTTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072111 93 - 16982598 ---AGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAT-AGA---GAGTTA----------GTGGCCGC-CCGCTC-AGCA--CCCTTGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915519 93 - 3785965 ---AGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAT-AGA---GAGTTA----------GTGGCCGC-CCGCTC-AGCA--CCCTTGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587411 93 - 90373283 ---AGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAT-AGA---GAGTTA----------GTGGCCGC-CCGCTC-AGCA--CCCTTGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462623 93 + 6149316 ---AGGGGCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAT-AGA---GAGTTA----------GTGGCCGC-CCGCTC-AGCA--CCCTTGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695521 89 - 5823884 ---AGGGGCACTGACCTTGGAGATGGCTCCGGCGGGGGGTCCTTCCTTCAAACAGAAGCAAT--------AGTTA----------GTGGCCGC-CCGCTC-AGCA--CCCATGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402323 92 + 159171411 ---GCAGGCACTGACCTTGGCGACGGCTCTGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAC-AGA---GAGTTA----------GTGG-CCC-CTGCTC-AGCA--CTCATGA i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15523127 93 + 16356641 ---CGGGGCACTGACCTTGGCGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAC-AGA---GAGTTA----------GTGGCCCC-CCGCTC-AGCA--CCCATAA i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 369475 93 + 1231380 ---GGGGGCACTGACCTTGGCGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAC-AGA---GAGTTA----------GTGGCCCC-CCACTC-AGCA--TCCATGA i cebCap1.NW_016107870v1 I 132 C 0 s aotNan1.NW_018500483v1 1931372 93 + 11732439 ---GGGGTCACTGACCTTGGAGACGGCTCCGGCGGGGGCTCCTTCCTTCAAACAGAAGCAAC-AGC---AAGTTA----------GTGGCCCC-CCGCTC-AGCA--CCCGTGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147580 91 + 22939663 ---GGAGGCACTGACCTTGGGGATGGCTCCGGCTGGGGCTCCTTCCTGCAAAAAGAAGCAGC-AG-----AGTCA----------GCATCTGG-CCACTC-AGGC--TGCCCCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181096937 95 + 182113224 ---GGAGGAACTGACCTTGGTGATGGCTCTGGCTGTGGCTCCTTCCTTCAAACAGAGG-AAC-AAA---GAGTTA----------GTAGCTAT-CCCCTCTGGCAGCCCCATGG i mm10.chr2 I 4 I 141 s canFam3.chr24 47074375 85 + 47698779 ---GCGGGCACTGACCTTGGCGAAGGCTCCGGCTGAGGCTCCTTCCTTTAAACAGAAGCGACAAGA---CTGTTA----------GCAGCTGG-CCCAGC-GG----------- i canFam3.chr24 I 5 C 0 s dasNov3.JH567899 92224 110 + 555560 GGCTGGGGCACCGACCTGGGTGACGGCTCCGGCTGCGGCTCCTTCCTGCAAAGAGAAGCAAC-GGGCATCAGCTGCAGGCCTTGCGTGGCCCCACTGCCA-TGCG--CCCACGG i dasNov3.JH567899 C 0 C 0 a score=405721.000000 s hg38.chr20_KI270871v1_alt 9537 38 + 58661 ---------GGGTCCCCCAACCAGTCCAG-CCCC------CCACAGTCCCATGG s panTro5.chr20 65579379 39 + 66533130 ---------GGGTCCCCCAACCAGTCCAGCCCCC------CCACAGTCCCATGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348629 39 + 62195757 ---------GGGTCCCCCAACCAGTCCAGCCCCC------CCACAGTCCCATGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759159 37 - 1017659 ---------GGGT-CCCCAACCAGTCCAG-CCCC------CCACAGTCCCATGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249897 38 - 110113093 ---------GGGTCCCCCAACCAGTCCAG-CCCC------CCACAGTCCCATGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969201 38 - 92844088 ---------GGGTCCCCTAACCAGCCCAG-CCCC------CCACAGTCCCATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616750 38 + 96509753 ---------GGGTCCCCTAACCAGCCCAG-CCCC------CCACAGTCCCATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072204 38 - 16982598 ---------GGGTCCCCTAACCAGCCCAG-CCCC------CCACAGTCCCATGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915612 38 - 3785965 ---------GGGTCCCCTAACCAGCCCAG-CCCC------CCACAGTCCCATGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587504 38 - 90373283 ---------GGGTCCCCTAACCAGTCCAG-CCCC------CCACAGTCCCATGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462716 38 + 6149316 ---------GGGTCCCCTAACCAGCCCAG-CCCC------CCACAGTCCCATGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695610 37 - 5823884 ---------GGGTCCCCTAACCAGCCCAG-CACC------CC-CAGTCCCATGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402415 38 + 159171411 ---------GGGTCCCCCAGCCAGCCCAG-CCCC------CCACAGTCCCATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523220 38 + 16356641 ---------GGGTCCCCCAGCCAGCCCAG-CCCC------CCACAGTCCCATGT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369568 38 + 1231380 ---------GGGTCCCCCAGCCAGCCCAG-CCCC------CCACAGTCCCATGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1931465 38 + 11732439 ---------GGGTCCCCCAGCCAGCCCAG-CCCC------CCACAGTCCCATGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147671 36 + 22939663 ---------GGAGCCTCTGCCTGGGCC---CACC------CCATGACCCCACAG i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47074460 38 + 47698779 ---------GCGGCCCCCACCCCGTGTAG-GGCC------CAGCGGACCCGTGG i canFam3.chr24 C 0 I 2313 s dasNov3.JH567899 92334 53 + 555560 GCACTGTCACACTCCCACGGACACCACGC-TCCCACAATGCCACGCTCCCATGG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181097032 141 + 182113224 I a score=554354.000000 s hg38.chr20_KI270871v1_alt 9575 59 + 58661 GTCAGGGGC-TGCAGGGGA-GGGGGGTCTCAGAAAAGGCTGGGCAGGGGTGGAGCTGGCCC s panTro5.chr20 65579418 59 + 66533130 GCCAGGGGC-TGCAGGGGA-GGGGGGTCTCAGAAAAGGCTGGGCAGGGGTGGAGCTGGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348668 59 + 62195757 GCCAGGGGC-TGCAGGGGA-GGGGGGTCTCAGAAAAGGCTGGGCAGGGGTGGAGCTGGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759196 59 - 1017659 GCCAGGGGC-TGCAGGGGA-GAGGGGTCTAAGAAAAGGCTGGGCAGGGGTGGAGCTGGCGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249935 59 - 110113093 GCCAGGGAC-TGCAGGGGA-GGGGGATCTCAGAAAAGGCTGGGCAGGGGTGGAGCTGGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969239 58 - 92844088 GCCAGGGGC-TGCAGGGGA--GGGGGTCTCAGAGAAGGCTGGGCAGGGGTGGAGCTGGCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616788 58 + 96509753 GCCAGGGGC-TGCAGGGGA--GGGGGTCTCAGAGAAGGCTGGGCAGGGGTGGAGCTGGCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072242 58 - 16982598 GCCAGGGGC-TGCAGGGGA--GGGGGTCTCAGAGAAGGCTGGGCAAGGGTGGAGCTGGCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915650 59 - 3785965 GCCAGGGGC-TGCAGGGGA-GGGGGGTCTCAGAGAAGGCTGGGCAGGGGTGGAGCTAGCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587542 59 - 90373283 GCCAGGGGC-TTCAGGGGA-GGGGGTTCTCAGAGAAGGCTGGGCAGGGGTGGAGCTGGCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462754 59 + 6149316 GCCAGGGGC-TGCAGGGGA-GGGGGGTCTCAGAGAAGGCTGGGCAGGGGTGGAGCTAGCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695647 59 - 5823884 GCCAGGGGC-TGCAGGGGA-GGAGGGTCTCAGAGAAGGCTGGGCAGGGGTGGAGCTGGCTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402453 59 + 159171411 GTCGGGGGC-TACAGGAGA-CGGGGGTCTCAGACAAGGCCGGGCAGGGGCGGAGCTGGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523258 59 + 16356641 GTTGGGGGC-TACACCGGA-CAGGGGTCTCAGACAAGCCCAGGCAGGGGCGGAGCTGGCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369606 59 + 1231380 GTCGGGGGC-TACATGGGA-CAGGGGTCTCAGACAAGGCCGGGCAGGGGTGGAGCTGGCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1931503 59 + 11732439 GTCAGGGGC-TACATGGGA-CGGGGGTCTCAGACAAGGCCAGGCAGGGGCAGAGCTGGCCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147707 48 + 22939663 GTTGGGGGC-TGCATGTGA--GGGGGGCTCAGAGAAGAT--GGCAGGTGCAGG-------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 92387 43 + 555560 GCCCTGTGCGTCCATGGGGCCACGCGCCT-------------GCAGGCGCCATGCT----- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181097032 141 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=1152177.000000 s hg38.chr20_KI270871v1_alt 9634 128 + 58661 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCACGGAGGCAGCTCCGAGAGGGAAGAGGGAC--TCCATGGGGCGGGGGCCTCT--------GC--TCTTCTGACCTGGG----GGTCTCTACCCCT-C s panTro5.chr20 65579477 128 + 66533130 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCACGGAGGCAGCTCCGAGAGGGAAGAGGGAC--TCCATGGGGCGGGGGCctct--------gc--tcttctgacctggg----ggtctctacccct-c i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348727 128 + 62195757 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCATGGAGGTAGCTCCGAGAGGGAAGAGGGAC--TCCATGGGGCGGGGGCctct--------gc--tcttctgacctggg----ggtctctacccct-c i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759255 125 - 1017659 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCAGCCCAGGGCCCATGGAGGCAGCTCCGAGAGGGAAGAGGGAC--TCCATGG---GGGGGCctct--------gc--tcttctgacctggg----ggtcactacccct-c i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109249994 124 - 110113093 ACCCACCCCAGAGGGCCCACGGGCCCGGGAACGGGCATCCCAGGGCCCACGGAGGCAGCTCCAAGAGGGAAGAGGGAC--TCCACG----GGGGGCCTCT--------GC--TCTTCCGACCTGGG----GGTCCCTACCCCT-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969297 123 - 92844088 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCATGGCGGCAGCTCTGAGAGGAAAGAGGGAC--TCCGCC----GGGGGCTTCT--------GC--TCTTCTGACCTGGG----GGTCACTA-CCCC-C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616846 123 + 96509753 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCATGGCAGCAGCTCTGAGAGGAAAGAGGGAC--TCCGCC----GGGGGCTTCT--------GC--TCTTCTGACCTGGG----GGTCACTA-CCCC-C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072300 123 - 16982598 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCATGGCGGCAGCTCTGAGAGGAAAGAGGGAC--TCCGCC----GGGGGCTTCT--------GC--TCTTCTGACCTGGG----GGTCACTA-CCCC-C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915709 124 - 3785965 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCATGGCAGCAGCTCTGAGAGGAAAGAGGGAC--TCCGCC----GGGGGCTTct--------gc--tcttctgacctggg----ggtcactaccccc-c i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587601 124 - 90373283 GCCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCATGGCAGCAGCTCTGAGAGGAAAGAGGGAC--TCCGCC----GGGGGCTTCT--------GC--TCTTCTGACCTGGG----GGTCACTACCCCC-C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462813 124 + 6149316 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCACGGCAGCAGCTCTGAGAGGAAAGAGGGAC--TCCGCC----GGGGGCTTct--------gc--tcttctgacctggg----ggtcactaccccc-c i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695706 123 - 5823884 ACCCACCCCAGAGAGCCCACAGCCCCA-GAACGGGCACCCCAGGGCCCATGGAGGCAGCTCTGAGAGGGAAGAGGGAC--TCCACC----GGGGGCTTCT--------GC--TCTTCTGACCTGGG----GGTCACTACCCCT-C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402512 122 + 159171411 ACCAGCCCCAGAGAGCCCACGGCCCCAGGAACAGGCACCCCAGGGTCCGTGGAAGCAGCTCCAAGAGGGAAGAGGGAC--CCCAC-----GGGGGCCTCT--------GC--TCTTCTGACCTGGG----GGTCACTACCCTC-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523317 118 + 16356641 ACCA---CCCGAGAGCCCACAGGCCCAGGAACGGGCACCCCAGGGCCCGCGGAGGCAGCTCCAAGAGGGAAGAGGGA---CCCAC-----GGGGGCCTCT--------GC--TCTTCTGACCTGGG----AGTCACTACCCTC-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369665 123 + 1231380 ACCCACCCCAGAGAGCCCACGGCTCCAGGAATGGGCACCCCAGAGTCCACGGAGGCAGCTCCAAGAGGGAAGAGGGAC--CCCAC-----GGGGGCCTCT--------GC--TCTTCTGACCTGGG----GGTCCCTTCCCTTC- i cebCap1.NW_016107870v1 C 0 I 9 s aotNan1.NW_018500483v1 1931562 119 + 11732439 ACCCACCCCAGAGAGCCCACGGCCCCAGGAACGGGCACCCCAGGGCCCACGGAGGCAGCTCCAAGAGGGAAGAGGGAC--CCCAC-----GGGGGCCTCT--------GC--TCTTCTGACCTGGG----GGTCACTATC----- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147755 113 + 22939663 AGCAGTCCCAGGGAGACAGCCTTCTGAGGGAAGGGAAGGCCA-AGCCTAGGTC-----CTCTCAG------GATGGACTGTCCAC-----ACAGGCCCAC--------ACAATCTCCTGACCCCAG----GCTGCCCCCCTC--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181097173 121 + 182113224 ACCATTCCCCTAGAGTGCCTGTCCTCTTGATGAGGCACTACAAGGCCCAGGAACAAGGCTGGGGGAAGGAAGGGG-----TTCCCA----AGGGAACTGT--------GG--TCTTCTGACCCAGG----GGGCTCCTTTATT-C i mm10.chr2 I 141 C 0 s dasNov3.JH567899 92430 122 + 555560 ------CCCATGGGCGCCACGCTCCTG----TGGGCAGGACCAGGTGCACAGAAACCGCCCCATG----GCGAGGGAC--TTCCAG----GAGGGGTCCCGAGGCATGGC--GCTTCCACTTCGAGCAGAGGCCACCACCCCG-G i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074498 2313 + 47698779 I a score=50637.000000 s hg38.chr20_KI270871v1_alt 9762 11 + 58661 CACATTTACAG s panTro5.chr20 65579605 11 + 66533130 cacatttacag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348855 11 + 62195757 cacatttacgg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759380 11 - 1017659 cacatttacag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250118 11 - 110113093 CACATTTACGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969420 11 - 92844088 CACATTCACGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616969 11 + 96509753 CACATTCACGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072423 11 - 16982598 CACATTCACGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915833 11 - 3785965 cacattcacgg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587725 11 - 90373283 CACATTCACGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462937 11 + 6149316 cacattcacgg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695829 11 - 5823884 CACATTCACGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402634 7 + 159171411 ----CGCGTGA i calJac3.chr5 C 0 I 3 s saiBol1.JH378156 15523435 7 + 16356641 ----CTCGTGA i saiBol1.JH378156 C 0 I 3 s aotNan1.NW_018500483v1 1931681 7 + 11732439 ----CTCATGA i aotNan1.NW_018500483v1 C 0 I 3 s otoGar3.GL873542 22147868 10 + 22939663 -TGCCTCACAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181097294 11 + 182113224 GATATTAATGG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 92552 1 + 555560 --------C-- i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 369788 9 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I a score=855100.000000 s hg38.chr20_KI270871v1_alt 9773 76 + 58661 ACACTCATTTTAATCAGAACCACACCAATATTAATAAAGTTCCAAAAAGCACGTGTTTGCTGAAGGAAGCTCTGGA s panTro5.chr20 65579616 76 + 66533130 acactcattttaatcagaaccacaccaatattaataaagttccaaaaagcacgtgtttgctgaagaaagctctgga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348866 76 + 62195757 acactcattttaatcagaaccacaccaatattaataaagttccaaaaagcacatgtttgctgaagaaagctctgga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759391 76 - 1017659 acactcattttaatcagaaccacaccaatattaataaagttccaaaaaggacgtgtttgctgaagaaagctctgga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250129 76 - 110113093 ACACTCATTTTAACCCGAACCACAGCAATATTAATAAAGTTCCAAAAAGGACGTGTTTGCTGAAGAAAGCTCCGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969431 76 - 92844088 acactcattttaaccagaaccacaccaatattaataaagttccaaaaaggacatgtttgctgaagaaagctccgca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95616980 76 + 96509753 ACACTCATTTTAACCAGAACCACACCAATATTAATAAAGTTCCAAAAAGGACATGTTTGCTGAAGAAAGCTCCGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072434 76 - 16982598 acactcattttaaccagaaccacaccaatattaataaagttccaaaaaggacatgtttgctgaagaaagctccgca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915844 76 - 3785965 acactcattttaagcagaaccacaccaatagtaataaagttccgaaaaggacatgtttgctgaagaaagctccgca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587736 76 - 90373283 ACACTCATTTTAACCAGAACCACACCAATATTAATAAAGTTCCAAAAAGGACATGTTTGCTGAAGAAAGCTCCGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5462948 76 + 6149316 acactcattttaaccagaaccacaccaatattaataaagttccaaaaaggacatgtttgctgaagaaagctctgca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695840 76 - 5823884 ACACTCATTTTAACCAGAACCACACCAATATTAATAAAGTTCCAAAAAGGACACGTTTGCTGAAGAAAGCTCCACA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402644 76 + 159171411 ACACTCATTTTAATCAGAACCACACCAGTGTTACTAAGATTCCAAAAAGGACACATTTGCTGACGAAAGCTCCAGA i calJac3.chr5 I 3 C 0 s saiBol1.JH378156 15523445 76 + 16356641 ACACCCGTTTTAATCAGAACCACACCAATATCACTAAGGTTCCGAAAAGGACGCGTCTGCTGACGACAGCTCCAGA i saiBol1.JH378156 I 3 C 0 s cebCap1.NW_016107870v1 369797 76 + 1231380 ACACTCGTTTTAATCAGAACCACACCAATATTACTAAGGTTCCAAAAAGGACACATTTGCTGATGGAAGCCCCAGA i cebCap1.NW_016107870v1 I 9 C 0 s aotNan1.NW_018500483v1 1931691 76 + 11732439 ACACTCGTTTTAATCAGAACCACAACAATATTACCAAGGTTCCAAAAAAGACACGTCTGCTGATGAAAGCTCCAGA i aotNan1.NW_018500483v1 I 3 C 0 s otoGar3.GL873542 22147878 74 + 22939663 ATTCTCCTTTTAATCAGAATCACACCAAT--TAGCAAAGTGTCTAAAATGAAGTGTTTGCTGAAGAAAGCTCTGAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181097305 70 + 182113224 ATGCTCATTTCAAT-ACAATCATACCAGTA----TAAAGTTTCAGAAAGAAAATG-CAGCTGAAGAAAGCTCTTGA i mm10.chr2 C 0 I 2383 s dasNov3.JH567899 92553 67 + 555560 -------TTGTGATCAG--TCATAGCAACATCAGCACCGTTTCCACCAGGAAGTGCTTTCTGAAAAAAGCTCCAGC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074498 2313 + 47698779 I a score=843536.000000 s hg38.chr20_KI270871v1_alt 9849 88 + 58661 -AGGGAGTTTAATT-TACAATCAATTTTCGAGACAGAGTGAGCTGCTCCGACTCTTTTTTCCACGCTCATCCTAATGGAATGATTCTCTT s panTro5.chr20 65579692 88 + 66533130 -ggggagtttaatt-tacaatcaattttcaagacagACTGAGCTGCTCCAACTCTTTTTTCCACGCTCATCCTAATGGAATGATTCTCTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348942 46 + 62195757 -ggggagtttaatt-tacaatcaattttcaagacagAC------------------------------------------TGATTCTCTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759467 88 - 1017659 -agggagtttaatt-tacaatcaattttcgagacagACTGAGCTGCTCCGACTCTTTTTCCCACGCTCATCCTAATGGAATGATTCTCTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250205 87 - 110113093 -AGGGAGTTTAATT-T-CAATCAATTTTCGAGACAGACTGAGCTGCTCCGACTCTTTCTTCCATGCTCATCCTAATGGAATGATTCTCTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969507 88 - 92844088 -agggagtttagtt-tacaatcaattttcgagacagactgagctgctccgactctttttcccacgcttatCCCAATGGAATGATTCTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95617056 88 + 96509753 -AGGGAGTTTAGTT-TACACTCAATTTTCGAGACAGACTGAGCTGCTCCGACTCTTTTTCCCACGCTTATCCCAATGGAATGATTCTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072510 88 - 16982598 -agggagtttagtt-tacaatcaattttcgagacagactgagctgctccgactctttttcccacgcttatCCCAATGGAATGATTCTCTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2915920 88 - 3785965 -agggagtttagtt-tacaatcaattttcgagacagactgagctgctccgactctttttcccacgcttatCCCAATGGAATGATTCTCTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587812 88 - 90373283 -AGGGAGTTTAGTT-TACAATCAATTTTCGAGACAGACTGAGCTGCTCTGACTCTTTTTTCCACGCTTATCCCAATGGAATGATTCTCTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463024 88 + 6149316 -agggagtttagtt-tacaatcaattttcgagacagACTGAGCTGCTCCGACTCTTTTTCCCACGCTCATCCCAATGGAATGATTCTCTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4695916 86 - 5823884 -AGGGAGTTTAGTT-TACAATCAATTCTCGAGACAGACTGAGCTGCTCCGACTCTTTT--CCACGCTTATCCCGATGGAATGATTCTCTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402720 88 + 159171411 -AGGGAGTTTAATT-TACGGTCGATTTTCAAGACAGACTGAGCGGCTCCAACTCTCTTTTCCATGCATTTCCTAATGGGATGATTCTCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523521 84 + 16356641 -AGGGAGTTTAATT-TACAGTCAATTTTCAAGACAGACTGAGCCGCTCCGA----CTTTTCCACGCGTATCCCAATGGGATGATTCTCTT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369873 88 + 1231380 -AGGGAGTTGAATT-TACAGTCAATTCTCAAGACACACTGAGCGGCTCCGACTCTCTTTTCCACGTGTACCCTAATGGGATGATTCTCTT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1931767 84 + 11732439 -AGGGAGTTTAATT-TACAATCAATTTTCAAGACAGACTGAGCAGCTCCGA----CTGTTCCACGCATATCCTAATGGGATGATTCTCTT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22147952 85 + 22939663 -AGGGCATC---TT-CACAATCAGTTCTCTGGACAGACTGAGCTGCTCTGATTCTTTTTTCCAGTTTTGACTCGATGGAGTAATTTTTTT i otoGar3.GL873542 C 0 I 2717 s dasNov3.JH567899 92620 87 + 555560 AGGATAATTTAATTCTGCAATTTACTTCCTGTAGAGAC-GGGCTGCTGCTGGT--TTTTTCCACCTTTAGTTTAATGGGATTATTCTTTC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=1409198.000000 s hg38.chr20_KI270871v1_alt 9937 175 + 58661 CCGCGTGACTTTCCAGGGGTGGCTCCACTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGCACCGCTGA--CCAACTGTCCCGGCCTCGTCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCATCTGGGGCTGTTTCCGCGGGTAAAGGCGTTATGGATTGAGTGAGAGATCGGCG----- s panTro5.chr20 65579780 175 + 66533130 CCGTGTGACTTTCCAGGGGTGGCTCCACTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGCACCGCTGA--CCAACTGTCCCGGCCTCGTCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCATCTGGGGCTGTTTCTGCGGGTAAAGGCGTTATGGATTGAGCGAGAGATCGGCG----- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61348988 175 + 62195757 CCGCATGACTTTCCAGGGGTGGCTCCACTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGCACCGCTGA--CCAACTGTCCCGGCCTCGTCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCATCTGGGGCTGTTTCTGCGGGTAAAGGCGTTATGGATTGAGTGAGAGATCGGCG----- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759555 175 - 1017659 CCGTGTGACTTTCCAGGGGTGGCTCCACTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGCACCGCTGA--CCAACTGTCCTGGCCTCGTCCTGCAGGCAAAGCTGTCTGGGCCTTCCGCCGTCTCATCTGGGGCTGTTTCTGCGGGTAAAGGCGTTATGGATTGAGTGAGAGATCGGTG----- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250292 174 - 110113093 CCGCGTGACTTTCCAGGGGTGGCTCCATTGCGCCACA-----ATCAGTGAGCCCAGGGTTTGCGCCACTGA--CCAACGGTCCCGGCCTCTTCCTGCGGGC-AAGCTGTCTGGGCCTTCCGGCGTCTCATTTGGGGCTCTTTCTGTGGGTAAAGGCATTATGGATTAAGTGAGAGATCGGTG----- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969595 173 - 92844088 CCGCACGACTCTCC-GGGGTGGCCCCATTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGTGCCACCAA--CCAACTGTCCCGGCCTCGCCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCACTTGGGGCTGTTTCTGCTGGTAAAGGCATTGCAGATTGAGT-AGAGATCGGTG----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95617144 173 + 96509753 CCGCACGACTCTCC-GGGGTGGCTCCATTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGTGCCACCAA--CCAACTGTCCCGGCCTCGCCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCACTTGGGGCTGTTTCTGCTGGTAAAGGCATTGCAGATTGAGT-AGAGATCGGTG----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072598 173 - 16982598 CCGCACGACTCTCC-GGGGTGGCTCCATTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGTGCCACCAA--CCAACTGTCCCGGCCTCGCCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCACTTGGGGCTGTTTCTACTGGTAAAGGCATTGCAGATTGAGT-AGAGATCGGTG----- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2916008 174 - 3785965 CCGCACGACTCTCCAGGGGTGGCTTCATTGCACCACA-----GTTAGTGAGCCCAGGGTTTGTGCCACCAA--CCAACTGTCCCGGCCTCGCCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCACTTGGGGCTGTTTCTGCCGGTAAAGGCATTGCAGATTGAGT-AGAGATCGGTG----- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89587900 173 - 90373283 CCGCATGACTCTCCAGGGGCGGCTCCATTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGTGCCACCAA--CCAACTGCCCCGGCCTCGCCCTGCAGGCAAATCTGTCTGGG-CTTCCGGCGTCTCACTTGGGGCTGTTTCTGCTGGTAAAGGCATTGCAGATTGAGT-AGAGATCGGTG----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463112 174 + 6149316 CCGCACGACTCTCCAGGGGTGGCTCCATTGCGCCACA-----GTCAGTGAGCCCAGGGTTTGTGTCACCAA--CCAACGGTCCCGGCCTCGCCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCACTTGGGGCTGTTTCTGCTGGTAAAGGCATTGCAGATTGAGT-AGAGATCGGTG----- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4696002 174 - 5823884 CCGCATGATTCTCCAGGGGTGGCTCCACTGCACCACA-----GTCAGTGAGCCCAGGGTTTGTGCTACCAA--CCAACTGTCCCGGCCTCGCCCTGCAGGCAAAGCTGTCTGGGCCTTCCGGCGTCTCACTTGGGGCTGTTTCTGCTGGTAAAGGCATTGTGGATTGAGT-AGAGATCGGCG----- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402808 173 + 159171411 CATTGCGATTTTCCAGGGGTGGCTCCACTGTGC--CA-----GTCAGCGAGCACAGGCTTCGCACCTCCGAGGCCAGCTGTCCCTGCCTCACCCTGCAGGGAAGGCAGTCTGGACCATACGGTGTCTCCCGTGGGGCTGTTTGTGCTGGTGACAGCGGCATGAATTAAGT--GAGATCAGCG----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523605 159 + 16356641 CCTCGCGATTTTCCAGGGGTGGCTCCACTGTGC--CA-----GTCAGTGAGCCCAGGCTTCGCG---CCAAGGCCAGCTGTCCCCGCCTGGCCCTGCAGGGAAGGCGGCCCGGAACAGACGGTGTCTCCCGTGGGGCTGTTTGTGCTGG-----------TGAATTGAGT--GAGATCGCTG----- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 369961 172 + 1231380 CCTCGCGATTTTCCAGGGGTGGTTCCACTGTGC--CA-----GTCAGCGAGCCCAGGCTTCGCACCACTGCAGCCAGCTGTCCCCGCCTCGCCCTGCAGGGAAGGCGGTCTGGACCCTACGGTGTCTCCCGTGGGGCTGTTTGTGCTGGTGACTGCAGCATGAATTGAGT--GAGA-CAGTG----- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1931851 172 + 11732439 CCTCGTGATTTTCCAGGGGTGGCTCCACTATGC--CA-----GTCAGCGAGCCCAGGCTTCGCGCCTTTGAGGCCAGCTGTCCC-GCCTCGCCCTGCAGGGAAGGCGATCTGGACCATACGGTGTCTCCCATGGGGCTGTTTGTGCTGGCAACTGCAGCATGAATTGAGT--GAGATCGGTG----- i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 92707 175 + 555560 CTGTGTG-TTTTCCAGGGAGGGCCATATCAGCCAGCAACCTCGTCAGGGTGGGTGGGGAGCGCGTCCGCGC--CCTTCCTTCCAAGGCCGATTTTGTGTGCAAAGCGATTGTGACCATCATCGGTTTTATTTGGGGTGAATCGTGTC--------CATTTTAGGTTGGGT-AAAGAGCGGTGGCGTG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22148037 2717 + 22939663 I a score=291520.000000 s hg38.chr20_KI270871v1_alt 10112 51 + 58661 GATCGTGATTTGGCTCATCCATGGGGAGGCC-CCAGCGATCTCATTCGAACA s panTro5.chr20 65579955 51 + 66533130 GATCGTGATTTGGCTCATCCATGGGGAGGCC-CCAGCGATCTCATTCGAACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61349163 51 + 62195757 GATCGTGATTTGGCTCATCCATGGGGAGGCC-CCAGCAATCTCATTCGAACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759730 51 - 1017659 GATCGTGATTTGGCTCATCCATGGGGAGGCC-CCAGCGATCTCATTCGAACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250466 51 - 110113093 GATCGTGATTTGGCTCATCCATGGGGAGGCC-CCAGCGATCTCATTCGAACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969768 51 - 92844088 GATTGTGATTTGGCTCATCCATGGGGAGGCC-CCAGCGATCTCGTCCAAACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95617317 51 + 96509753 GATTGTGATTCGGCTCATCCATGGGGAGGCC-CCAGCGATCTCGTCCAAACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072771 51 - 16982598 GATTGTGATTCGGCTCATCCATGGGGAGGCC-CCAGCGATCTCGTCCAAACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2916182 51 - 3785965 GATTGTGATTCGGCTCATCCATGGGGAGGCC-CCAGCGATCTCGTCCGAACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89588073 51 - 90373283 GACTGTGATTCGGCTCATCCATGGGGAGGCC-CCAGCGATCTCATCCGAACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463286 51 + 6149316 GATTGTGATTCGGCTCATCCATGGGGAGGCC-CCAGCGATCTCGTCCGAACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4696176 51 - 5823884 GATTGTGATTTGGCTCATCCGTGGGGAGGCC-CCAGCGATCTCATCTGAACA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57402981 23 + 159171411 GGTCATGATTT-GCTCACCCATGG---------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523764 23 + 16356641 GGTCATGATTT-GTTCACCCGTGG---------------------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 370133 23 + 1231380 GGTCGTGATTT-GCTCACCCGTGG---------------------------- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932023 23 + 11732439 GGTTGTGATTT-GCTCACCCGTGG---------------------------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22150754 51 + 22939663 GATCTTTCCTAGACCAGTCCACGAGAAGACTACAAGTGGTCACAGT-GGACA i otoGar3.GL873542 I 2717 C 0 s dasNov3.JH567899 92882 46 + 555560 GATGGTCGCTGGGCTGCACCACGGGA------CGGGCGGTCCCCTTCGGACA i dasNov3.JH567899 C 0 I 324 e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=803276.000000 s hg38.chr20_KI270871v1_alt 10163 90 + 58661 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGCTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGACAGGGACCGTGTTGCC s panTro5.chr20 65580006 90 + 66533130 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGCTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGACAGGGACCGTGTTGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61349214 90 + 62195757 CCTGGGC--CGGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGCTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGACAGGGACCGTGTTGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759781 90 - 1017659 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGCTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGACAGGGACCGTGTTGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250517 90 - 110113093 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCGTGTTATA------AGCAGGCTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGACAGGGACCGTGTTGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969819 90 - 92844088 CCTGGGC--TGGTGC-CCCAGCTGGTACGCCGTGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGGCAGGGACCGTGTTGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95617368 90 + 96509753 CCTGGGC--TGGTGC-CCCAGCTGGTACGCCGTGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGGCAGGGACCGTGTTGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16072822 90 - 16982598 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGGCAGGGACCGTGTTGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2916233 90 - 3785965 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCACG-----------------------------------------------------TGGCAGGGACCGTGTTGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89588124 90 - 90373283 CCTGGGC--CAGTGC-CCCGGCTGGTACGCCGTGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGGCAGGGACCGTGTTGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463337 90 + 6149316 CCTGGGC--TGGTGC-CCCGGCTGGTACGCCATGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCATG-----------------------------------------------------TGGCAGAGACCGTGTTGCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4696227 88 - 5823884 CCTGGGC--TGGTGC-CCCAGCTGGTACGCCGTGTTACA------AGCAGGTTCTTTGGTGCACTTCCAAATACTTCACG-----------------------------------------------------Tggcagggaccgtgttg-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57403004 78 + 159171411 -----------GTGC-GAGGGCTGGT---CCAAGTAACA------GGCAGGCTCTTCAGTGCACTTCCAGATCCTTCACG-----------------------------------------------------TGACGGGGACCGTGTTGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523787 81 + 16356641 -----------GTGC-GCAGGCTGGCCCGCCGAGTTACA------GGCAGGCTCTTGGGTGCACTTCCAGATCCTTCACG-----------------------------------------------------TGACTGGGACCGTGTTTCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 370156 81 + 1231380 -----------GTGC-GCAGGCTGGTCCGCCGAGTTACA------GGCAGGCTCTTCGGTGCACTTCCAGATCCTTCACG-----------------------------------------------------TGACAGGGACCGTGTTGCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932046 81 + 11732439 -----------GTGC-GCAGGCTGGTCCGCCGAGTTACA------GGCAGGCTCTTCAGTGCACTTCCAGATCCTTCAGG-----------------------------------------------------TGACGGGGACCATGTTGCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22150805 146 + 22939663 CATGGGCATAGGTGCACCTGGCCAG------GTGTTCTAGCACTCAGCAGACTCTCTGGTGCACTTCTGAACATCTGCTGACCGGAGCTGAGAAGCTGCAGTGGCAAAGGGAAGGTGTGGCAGCCAGACCCCCTGCCTGGGACTGGGTTCCC i otoGar3.GL873542 C 0 I 137 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=17745.000000 s hg38.chr20_KI270871v1_alt 10253 2 + 58661 GT s panTro5.chr20 65580096 2 + 66533130 GT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61349304 2 + 62195757 GT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759871 2 - 1017659 GT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250607 2 - 110113093 GT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969909 2 - 92844088 GT i rheMac8.chr10 C 0 I 26 s macFas5.chr10 95617458 2 + 96509753 GT i macFas5.chr10 C 0 I 8 s macNem1.NW_012014244v1 16072912 2 - 16982598 GT i macNem1.NW_012014244v1 C 0 I 26 s cerAty1.NW_012001373v1 2916323 2 - 3785965 GT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89588214 2 - 90373283 AT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463427 2 + 6149316 GT i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57403082 2 + 159171411 GT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523868 2 + 16356641 GA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 370237 2 + 1231380 GT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932127 2 + 11732439 GT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22151088 2 + 22939663 GT i otoGar3.GL873542 I 137 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I e colAng1.NW_012114444v1 4696315 0 - 5823884 C a score=7396.000000 s hg38.chr20_KI270871v1_alt 10255 9 + 58661 --GGAA-------CATGG s panTro5.chr20 65580098 9 + 66533130 --GGAA-------CATGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61349306 9 + 62195757 --GGAA-------CATGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759873 9 - 1017659 --GGAA-------CATGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250609 9 - 110113093 --GGAA-------CATGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95617468 16 + 96509753 --GGAGGGTCCCTCATCG i macFas5.chr10 I 8 I 2 s calJac3.chr5 57403084 8 + 159171411 --GGAG-------CACG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523870 8 + 16356641 --GGAG-------CATG- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 370239 8 + 1231380 --GGAG-------CATG- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932129 8 + 11732439 --GGAG-------CATG- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22151090 9 + 22939663 AACAAA-------TAG-- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I e manLeu1.NW_012104365v1 5463429 0 + 6149316 C e colAng1.NW_012114444v1 4696315 0 - 5823884 C e chlSab2.chr2 89588216 0 - 90373283 C e cerAty1.NW_012001373v1 2916325 0 - 3785965 C e macNem1.NW_012014244v1 16072914 26 - 16982598 I e rheMac8.chr10 91969911 26 - 92844088 I a score=3987310.000000 s hg38.chr20_KI270871v1_alt 10264 453 + 58661 TC------CACGCTCTC----------------------------------------------------------GGGGAGGGTCCCTCATCACCTCCTGCAGCTCCCGGTGGCC-CAGGTGtccttggcttgtggctg-caccgccccgtctctgcctccgtctctacacgacattctctgtgtctctgtgtcttctcctcctct------acctctg-taaggacagctgtcaccggg-ctagggctcaagctgtcaccaggctcatcaggatgttccaggatgacctcatctcaagatcccaagctcagttacagctgcaaggaccctttctccaaatcaggtcacatttgcaaattctgggACAT------------TTTGGAGACCAGCATTCAA-CCACTGCATTc--ccccgaccccccaaaattcatgtccatcttacatcgagaatacactcacccctgccaagatcccccaaaatctccaccctctgcagcatggactgtgtgtccaaaacctcatcgaaatcccatccgtt s panTro5.chr20 65580107 453 + 66533130 TC------CACgctctc----------------------------------------------------------ggggagggtccctcatcacctcctgcagctcccggtggcc-caggtgtccttggcttgtggctg-caccgccccgtctctgcctccgtctctccacaacattctctgtgtctctgtgtcttctcctcctct------acctctg-taaggacagctgtcaccggg-ctagggctcaagctgtcaccaggctcatcgggatgttccaggatgacctcatctcaagatcccaagctcagttacagctgcaaggaccctttctccaaatcaggtcatatttgcaaattctgggACAT------------TTTGGAGACCAGCATTCAA-CCACTGCATTc--ccccgaccccccaaaattcatgtccgtcttacatcgagaatacactcacccctgccaagattccccaaaatctccaccctctgcagcatggactgtgtgtccaaatcctcatcgaaatcccatccgtt i panTro5.chr20 C 0 C 0 s panPan2.chr20 61349315 453 + 62195757 TC------CACgctctc----------------------------------------------------------ggggagggtccctcatcacctcctgcagctcccggtggcc-caggtgtccttggcttgtggctg-caccgccccgtctctgcctccatctctccacgacattctctgtgtctctgtgtcttctcctcctct------acctctg-taaggacagctgtcaccggg-ctagggctcaagctgtcaccaggctcatcgggacgttccaggatgacctcatctcaagatcccaagctcagttacagctgcaaggaccctttctccaaatcaggtcacatttgcaaattctgggacat------------cttggagaccagcattcaa-ccACTGCATTc--ccccgaccccccaaaattcatgtccgtcttacatcgagaatacactcacccctgccaagatcccccaaaatctccaccctctgcagcatggactgtgtgtccaaaacctcatcgaaatcccatccgtt i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 759882 442 - 1017659 TC------CATgctctc----------------------------------------------------------ggggagggtccctcatcacctcctgcagctcccggtggcc-caggtgtccttggcttgtggctg-caccaccccgtctctgcctccgtctctccatgacat--------tctctgtgtcttctcctcctct------acctctg-taaggacagctgtcaccggg-ctagggctcaagctgtcaccaggctcatcgggatgttccaggatgacctcatctcaagatcccaagctcagttacagctgcaaggaccctttctccaaatcaggtcacatttgcaaattctgggACAT------------TTTGGAGACCAGCATTCAA-CCACTGCATTc--ccccgaccccc--aaattcatgtccgtcttacatcgagaatacactca-ccctgccaagatcccccaaaatctccgccctctgcagcatggactgtgtgtccaaaacctcatcgaaatcccatccgtt i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109250618 454 - 110113093 TC------CACgctctc----------------------------------------------------------ggggagggtccctcattgcctcctgcagctcccggtggcc-caggcgtccttggcttgtggctg-caccgccccatctctgcctccatctctccacgacattctctgtgtctctgtgtcttctcctcctct------acctctg-taaggacagctgtcaccagg-ctagggctcaagctgtcaccgggctcatcaggatgttccagcatgatctcatctcaagatcccaagctcagttacagctgcaagggcgctttttccaaatcaggtcacatttgcacattctgggacat------------tttggagaccagcattcaacccactgcaTTc--ccccgaccccccaaaattcatgtccgtcttatgtccagaatacactcacccctcccaagatcccccaaaatctccatcctctgcagcatggactgtgtgtccaaaacctcattgaaatcccatccgTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91969937 437 - 92844088 TC------CGTgctctc----------------------------------------------------------ggggagggtccctcatcgcctcctgcagctcccggtggcc-caggtgtccttggcttgtggctg-caccactccgtctctgcctctgtctctccatggcactctccatgtctctgtgtcttcccctcctct------acctctg-taaggacagctgtcaccggg-atag-----------------ggcccattgggatgatccagggtgatctcatctcaagatcccaaactcagttatagctgcaaggaccctcttcccaaataaggtcacatttgcacattctgggacat------------tttggagaccagcattcaacccacTGCATTC--TCCCAACcccccaaaattcatggccgtcttatgtccagaatacactcacccctcccaagatcccccaaagtctccaccctctgcagcacggaatctgtgtccaaaacctcatcgaactcccatttgTT i rheMac8.chr10 I 26 C 0 s macFas5.chr10 95617486 437 + 96509753 TC------CGTGCTCTC----------------------------------------------------------GGGGAGGGTCCCTCATCGCCTCCTGCAGCTCCCGGTGGCC-CAGGTGtccttggcttgtggctg-caccactccgtctctgcctctgtctctccatggcactctccatgtctctgtgtcttcccctcctct------acctctg-taaggacagctgtcaccggg-atag-----------------ggcccattgggatgatccagggtgatctcatctcaagatcccaaactcagttatagctgcaaggaccctcttcccaaataaggtcacatttgcacattctgggacat------------tttggagaccagcattcaacccactgcaTTC--TCCCAACcccccaaaattcatggccgtcttatgtccagaatacactcacccctcccaagatcccccaaagtctccaccctctgcagcacggaatctgtgtccaaaacctcatcgaactcccatttgTT i macFas5.chr10 I 2 C 0 s macNem1.NW_012014244v1 16072940 437 - 16982598 TC------CGTgctctc----------------------------------------------------------ggggagggtccctcatcgcctcctgcagctccgggtggcc-caggtgtccttggcttgtggctg-caccactccgtctctgcctctgtctctccatggcactctccatgtctctgtgtcttcccctcctct------acctctg-taaggacagctgtcaccggg-atag-----------------ggcccattgggatgatccagggtgatctcatctcaagatcccaaactcagttatagctgcaaggaccctcttcccaaataaggtcacatttgcacattctgggacat------------tttggagaccagcattcaacccacTGTATTc--ccccaaccccccaaaattcatggccgtcttatgtccagaatacactcacccctcccaagatcccccaaagtctccaccctctgcagcacggaatctgtgtccaaaacctcatcgaactcccatttgTT i macNem1.NW_012014244v1 I 26 C 0 s cerAty1.NW_012001373v1 2916325 432 - 3785965 -----------gctctc----------------------------------------------------------ggggagggtccctcatcgcctcctgcagctcccggtggcc-caggtgtccttggcttgtggctg-caccactccgtctctgcctctgtctctccatggcactctccatgtctctgtgtcttcccctcctct------acctctg-taaggacagctgtcaccggg-atag-----------------ggcccattgggatgatccagggtgatctcatctcaagatcccaaactcagttatagctgcaaggacgctcttcccaaataaggtcacatttgcacattctgggacat------------tttggagaccagcattcaacccacTGCATTc--ccccaaccccccaaaattcacggccgtcttatgtccagaatacactcactcctcccaagatcccccacagtctccaccctctgcggcacggactctgtgtccaaaacctcatcgaactcccatttgtt i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89588216 431 - 90373283 -----------GCTCTC----------------------------------------------------------GGGGAAGGTCCCTCATCGCCTCCTGCAGCTCCCGGTGGCC-CAGGTGtccttggcttgtggccg-caccgctccgtctctgcctccgtctctccatggcactctccgtgtctctgtgtcttcccctcctct------acctctg-taaggacagctgtcaccggg-atag-----------------ggcccattgggatgatccagggtgatctcatctcaagatcccaaactcagttatagctgcaaggaccctcttcccaaataaggtcacatttgcacattctgggacat------------tttggagaccagcattcaacccactgcaTTC--TCCCAACcccccagaattcatgtccatcttacgtccagaatacactcacccctcccaagatcccccaaagtctccaccct-tgcagcacggactctgtgtccaaaacctcattgaactcccatttgCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463429 432 + 6149316 -----------gctctc----------------------------------------------------------ggggagggtccctcatcgtctcctgcagctcccggtggcc-caggtgtccttggcttgtggctg-caccactccgtctctgcctctgtctctccatggcactctccatgtctctgtgtcttcccctcctct------agctctg-taaggacagctgtcaccggg-atag-----------------ggcccattgggatgatccagggtgatctcatctcaagatcccaaactcagttatagctgcaaggaccctcttcccaaataaggccacatttgcacattctgggacat------------tttggagaccagcattcaacccacTGCATTc--ccccaaccccccaaaattcatggccgtcttatgtccagaatacactcacccctcccaagatccccaaaggtctccaccctctgcaggacagactctgtgtccaaaacctcatcgaactcccatttgTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4696315 436 - 5823884 -c------catgctctc----------------------------------------------------------agggagggtccctcatcgcctcccgcagctcccggtggcc-caggtgtccttggcttgtggccg-caccactctgtctctgcctccatctctccatggcattctccatgtctctgtgtcttctcctcctct------acctctg-taaggacagctgtcaccagg-ctag-----------------ggcccattaggatgatccagggtgacctcatctcaagatcacaaactcagttacagctgcaaggaccctcttcccaaataagatcacatttgcacattctggaacat------------tttggagaccagcattcaacccacTGCATTc--ccccaaccccccaaaattcatgtccgtcttatgtccagaatacactcacccctcccaagatcccccaaagtctctaccctctgcagcacggactctgtgtccaaaacctcatcgaactcccatttgtt i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57403092 404 + 159171411 --------------------------------------------------------------------------------GGGTCCCTCATCGCCTCCTGCAGTTCCCGGCAGCC-CAGGAGtccatggcttgtggccg-cacagccccgtctctgcctccatctctccgtagcactctccacgtctgcatgt------ctcctct---------gctg-taaggacagctgccaccgggcctag-----------------ggctcgct-ggatgatccagggtgaccttgcctcaagatcccaggcttggttacagatgcaaggac-ctttttccaaataaggtcaccttTGCACACTCTGGGACAC------------TTTGGAGACCAGCATCCAACCCActgtgttc--ccccaaacccccaaaattcat-------ttatgttcagaatacacccacccctgccaagatcccccagagtctccactctctgcagcatggactctatgtccaaaacctcatcgaaatcctatcCATT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15523878 395 + 16356641 --------------------------------------------------------------------------------GGGTCCCTCGCCGCCTCCTGCAGCTCCCGGCAGCC-CAGGAGTccttggcttgtggccg-caccgccccgtctctgcctccgtctctccgtgttgttctccacgtcagc-----------------------------g-taaggacagctgtcaccggacctag-----------------ggctcacc-ggatgatccagggcgatcttgcctcaagatcccaggcttggttacagatgtaaggac-ctttttccaaataaggtcacctttgcacaCTCTGGGACAT------------TTTGGAGACCAGCATCCAACCCACTGTGTTC--CCCCAAAcccccaaaattcatgtccatcttatgttcagaatacactcacccctgccaagatcccccagaggctccaccctctgcagcatgga--ctgtgtccaaaacctcaccgaagtcccatcCACT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 370247 414 + 1231380 --------------------------------------------------------------------------------GGGTCCCTCACCGCCTCCTGCAGCTCCCAGCAGCC-CAGGAGtccttggcttctggccg-caccgccccgtctctgcctccgcctctccgcggcgttctccacgtctgcgtgtct---cctcctct---------gctg-taaggacagctgccaccggacctag-----------------ggctcact-ggatgatccagggtgaccttgcttcaagatcccaggcttggttacagatgcaaggac-ctttttccaaataaggtcacctttgcaCACTCTGGGACAT------------TTTGGAGACCAGCATCCAACCCACTGTGTTC--CCCCAAAcccccaaaattcatgtccatcttatgttcagaatacactcacccttgccaaaatcccccagagtctccaccctctgcagcatggactctgtgtccaaaacctcatcgaaatcccatcCATT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932137 422 + 11732439 --------------------------------------------------------------------------------GGGTCcctcctcgcctcctgcagctcccggcagcc-caggagtccttggcttgtggccg-caccg-cccgtctctgcctccatctctccgtggcgttctccacgtctgcgtttct---cctcctctgtagggacagctg-tagggacagctgccgccggaccccg-----------------ggctcact-ggatggtccagggtggtcttccctcatgatcccaggcttggttacagatgcaaggac-ctttttccaaatgaagtcgcctttgcaCACTCTGGGACAT------------CTTGGAGACCAGCATCCAATCCACTGTGTTC--CCCCAAAcccccaaaattcatgtccatcttatgttcagaatacacccacccctgccaagatctcccagagtctccaccctctgcagcatggactctgtgtccaaaacctcatcgaaatcccatcCATT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22151099 488 + 22939663 TCACAGGGCACGCtctcacggtcctgggggccacaaagctgaaatcaaggtgttgacagggccccccaatgcccaaggggaggaccttctgtgcctcccacagctgctggtggcctcagggatcctgggcttgtgtctgccactccccaatctctgcctgtgtccttccatggctctctctgtgtctct-----------tcttat------gtatctgataaagacaatcat--------ttgg-----------------ggctcaccgaggtaattcaggatgcccttatcttaagacc-----cttagttacatctgcaaagagcctttttccagataaggtctcatgcacagatcttggggcatgaacttatcttctggggggatgaacattcaacccaacacaGTCCTCCCCAGAccccaaaagttcatgtcccttttaagaccagaatacactcactccatcctaacaccccgaaaatctcaacca-ctgcagcatcaa------atccaaaatctcatctaaataccgtcagtt i otoGar3.GL873542 C 0 I 80 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=3412950.000000 s hg38.chr20_KI270871v1_alt 10717 380 + 58661 ggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttc-gagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccgggtgtggtggcagg-----------------------------------------------------------------tgcctgtaatcccaggtactcgggaggttgagggaggagaatcacttgaacccaggaggcagaggttgcagtaagctgtgattgcgccactgcactccagcctgagtgacgcagggagactccgtctcagag---aaaaa-----------aaaaagaaatcccacccattcaaaacgtcccaaatcccatcctctgaagtcatgacaatcacttaaatcaggtatgtgtgagaccgtgg s panTro5.chr20 65580560 381 + 66533130 ggccaggcgcagtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttc-gagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatcagctgggtgtggtggcagg-----------------------------------------------------------------tgcctgtaatcccaggtactcgggaggttgagggaggagaatcacttgaacccaggaggcagaggttgcagtaagctgtgattgcgccactgcactccagcctgagtgacgcagggggactccgtctcagag--aaaaaa-----------aaaaagaaatcccatccattcaaaacgtcccaaatcccatcctctgaagtcatgacaatcacttaaatcaggtatgtgtgagaccgtgg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61349768 380 + 62195757 ggccaggcgcagtggctcacgcctgtaatcccagcattttgggaggccgaggcgggtggatcacctgaggtcaggtgttc-gagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaatcagctgggtgtggtggcagg-----------------------------------------------------------------tgcctgtaatcccaggtactcaggaggttgagggaggagaatcacttgaacccaggaggcagaggttgcagtaagctgtgattgcgccactgcgctccagcctgagtgacgcagggagactccgtctcagag---aaaaa-----------aaaaagaaatcccatccattcaaaacgtcccaaatcccatcctctgaagtcatgacaatcacttaaatcaggtatgtgtgagaccgtgg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 760324 379 - 1017659 ggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttc-aagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggcagg-----------------------------------------------------------------tgcctgtaatcccaggtactcgggaggttgagggaggagaatcacttgaacccaggaggcagaggttgcagtaagctgtgattgcgccactgcactccagcctgagtgacgcagggagactccgtctcagag----aaaa-----------aaaaagaaatcccatccattcaaaacgtcccaaatcccatcctctaaagtcatgacaatcacttaaatcaggtatgtgtgagaccgtgg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251072 380 - 110113093 ggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatca--tgaggtcaggagctctgagaccagcctgaccaacatggtgaaaccccatctccactaaaaatacaaaaattagctgggtgtggtggcagg-----------------------------------------------------------------cgcctgtaatcccaggtactcaggaggttgagggaggagaatcacttgaatccaggaggcagaagttgcagtaagctgtgattgcgccactgcgctccagcctgagtgacacagggagactcggtctcagag--aaaaaa-----------aaaaagaaaTCCcatccattcaaaacatcccaaatcccatcctctaaagtcatggcaatcacttaaatcaggtacgtgtgagaccgtgg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91970374 388 - 92844088 ggccaggcgtggtggctcacgcctgcaatcccagcactttgggaggccgagacaggcagatcacctgaggtcaggagttc-gagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaacttagctgggtgtggtggcggg-----------------------------------------------------------------cgtctgtaatcccagggactcgggaggttgagggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgatcgtgccattgcactccagcctgagtgacacagggagactccgtctcggag--aaaaaaaaaacag----aaaaagaaaTCCCATCCATTCAAAaagtcccaaatcccatcatctaaagtcatggcaatcacttaaatcaggtgtgtgtgagactgtgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95617923 388 + 96509753 ggccgggcgtggtggctcacgcctgcaatcccagcactttgggaggccgagacaggcagatcacctgaggtcaggagttc-gagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaacttagctgggtgtggtggcggg-----------------------------------------------------------------cgtctgtaatcccagggactcgggaggttgagggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgatcgtgccattgcactccagcctgagtgacacagggagactccgtctcggag--aaaaaaaaaacag----aaaaagaaatcccatccattcaaaaagtcccaaatcccatcatctaaagtcatggcaatcacttaaatcaggtgtgtgtgagactgtgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16073377 388 - 16982598 ggctgggcgtggtggctcacgcctgcaatcccagcactttgggaggccgagacaggcagatcatctgaggtcaggagttc-gagaccagcctgaccaatatggtgaaaccccatctctactaaaaatacaaaacttagctgggtgtggtggcggg-----------------------------------------------------------------cgtctgtaatcccagggactcgggaggttgagggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgatcgtgccattgcactccagcctgagtgacacagggagactccgtctcggag--aaaaaaaaaacag----aaaaagaaaTCCCATCCATTCAAAaagtcccaaatcccatcatctaaagtcatggcaatcacttaaatcaggtgtgtgtgagactgtgg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2916757 390 - 3785965 ggccgggcgcggtggctcacgcctgcaatcccagcaatttgggaggctgagacaggcagatcacctgaggtcaggagttc-aagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacaaaacttagctgggtgtggtggcggg-----------------------------------------------------------------cgtctgtaatcccagggactcgggaggttgagggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgatcgtgccattgcactccaacctgagtgacacagggagactccgtctcggaggaaaaaaaaaaacag----aaaaagaaatcccatccattcaaaaagtcccaaatcccatcatctaaagtcatggcaatcacttaaatcaggtgtgtgtgagactgtgt i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89588647 389 - 90373283 ggccgggcgcggtggctcacgcctgcaatcccagcactttgggaggccgagacaggcagatcacctgaggtcaggagttc-gagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacaaaacttagctgggtgtggtggcggg-----------------------------------------------------------------cgcctgtaatcccagggactcgggaggttgatggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgatcgtgccattgcactccagcctgagtgacacaagaagactccgtctcggag--aaaaaaaaaacag---aaaaaagaaaCCCTATCCATTCAAAaagtcccaaatcccatcatctaaagtcatggcaatcacttaaatcaggtgtgtgtgagaccacgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5463861 388 + 6149316 ggccgggcgtgggggctcacacctgcaatcccagcactttgggaggccgagacaggcagatcacctgaggtcaggagttc-gagaccagcctgaccaatatggtgaaaccccgtctctactaaaaatacaaaacttagctgggtgtggtggcggg-----------------------------------------------------------------cgtctgtaatcccagagactcgggaggttgagggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgatcgtgccattgcactccagcctgagtgacacagggagactccgtctcggag--aaaaaaaaaacag----aagaagaaaTCCCATCCATTCAAAaagtcccaaatcccatcatctaaagtcatggcaatcacttaaatcaggtgtgtgagagactgtgg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4696751 378 - 5823884 ggccaggcgcggtggctcacgcctgcaatcccagcactttcggaggccgagacaggcagatcacctgaggtcaggagttc-aagaccagcctgaccaatatggtgaaaccccgtctctcctaaaaatacaaaaattagctgggtgtggtggcggg-----------------------------------------------------------------cgcctgtaatcccagggactcgggaggttgagggaggagaatcacttgaacccaggaggcagaagttgcagtgagccgtgagagtg--------------cctgagtgacacagggagactctgtctcggag--aaaaaaaaaaaaatagaaaaaagaaatcccatgcattcaaaaagtcccaaatcccatcatctaaagtcatggccatcacttaaatcaggcgtgtgtgagactgtgg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57403496 434 + 159171411 gactgggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcggatggatcacctaaggtcacgagttc-aagaccagcctggccaacatggtgaaactctgtctctactaaaaatataaaaattagctgggtgtattggcaggtgcctgcaatcccagctgctcaggagccaagggaggagaatggcttgaacacaggaggtagaggttgcctgcaatcccagctactcagga-gccaagggaggagaatggcttgaacacaggaggtagaggttgcagtgagccgtgatcgcaccactagacaccagcctgagagacacagtgagactcggtctcaggg------------------------gaaaTCCCATTTGTTCAAAaagtcccaaatctcattatccaaagtcatggaagtcactgaagtcaggtatgtgtgaggccatgg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15524273 368 + 16356641 ggctgggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctacagtcaggaattc-aagaccagcctgaccaacatggtgaaactctatctctagtaaaaatataaaaattagctgggtatggtggcggg-----------------------------------------------------------------tgcctgcaatcccagctactcagga-ggcgagggaggagaatggcttgaacccaggaggcagaggttgcagtgagctgtgatcgcaccaccagactccagcctgagtgacacagtgagactcggtctcggga------------------------gaaaCCTCACGTGTTCAAAaagtcccaagtctcatcatctgaagtcgtggaa-tcactgaagtcaggtacgtgtgaggccgggg i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 370661 369 + 1231380 ggctgggcacagtggctcacacctgtaatcccagcactttgggaggccgaggcgggtagatcatctaaggtcaggagttc-aagaccagcctgaccaacatggtgaaactctgtctctactaaaaatataaaaattagctgggtgtggtggcggg-----------------------------------------------------------------tgcctgcaatccctgctactcagga-gccaagggaggagaatggcttgaacccaggaggcagaggttgcagtgagccgtgatcgcaccactagacttcagcctgagtgacacagtgaggctcggtctTGGGG------------------------GAAATCCCATTTGTTCAAAaagtcccaaatctcatcatctaaagtcatgggaatcactgaactcaggtacgtgtgaggccgtgg i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932559 340 + 11732439 ggctgggcgcggtggctcacacctgtaatctcagcactttgggaggccgaggtgggtggatcacctaaggtcaggagttc-aagaccagcctgaccaacatggtgaaa--ctgtctctactaaaaatataaaaattagctgtgtgtggtggcgga-----------------------------------------------------------------cg---------ccagctactcagga-gccgagggaggagaatggcttgaacccaggaggcagaggttgcagtgagccgtgattgcaccactagactccagcccgagtgacacagtgagattcggtctcaGGG------------------------GAAATCCCATTTGTTCAAAaagtcccaaatctcgtcatctaaag------------------tcaggtatgtgtgaggccgtgg i aotNan1.NW_018500483v1 C 0 I 46 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22151587 80 + 22939663 I a score=106316.000000 s hg38.chr20_KI270871v1_alt 11097 15 + 58661 gtgtgcgccaacctg s panTro5.chr20 65580941 15 + 66533130 gtgtgcgccaacctg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350148 15 + 62195757 gtgtgcgccaacctg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 760703 15 - 1017659 gtgtgcgccaacctg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251452 15 - 110113093 gtgtgcgccaacctg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91970762 15 - 92844088 gtgtgcaccaacctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95618311 15 + 96509753 gtgtgcaccaacctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16073765 15 - 16982598 gtgtgcaccaacctg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917147 15 - 3785965 gtgtgcaccaacctg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589036 15 - 90373283 gtatgcaccaacctg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5464249 15 + 6149316 gtgtgcaccaacctg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697129 15 - 5823884 gtatgcaccagcctg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57403930 13 + 159171411 --ctgcgccacgctg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15524641 13 + 16356641 --ctgtgccacgctg i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 371030 13 + 1231380 --ctgcgccacgctg i cebCap1.NW_016107870v1 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1932899 46 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22151587 80 + 22939663 I a score=229459.000000 s hg38.chr20_KI270871v1_alt 11112 32 + 58661 gggctaaagtcctccatgcatgggcttgtgaa s panTro5.chr20 65580956 31 + 66533130 gggctaaagt-ctccatgcatgggcttgtgaa i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350163 31 + 62195757 gggcttaagt-ctccatgcatgggcttgtgaa i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 760718 32 - 1017659 gggctgaagtcccccatgcatgggcttgtgaa i gorGor5.CYUI01015750v1 C 0 I 1 s nomLeu3.chr13 109251467 32 - 110113093 gggctaaagtcttccatgcatgggcttgtgaa i nomLeu3.chr13 C 0 I 1 s rheMac8.chr10 91970777 32 - 92844088 gggctaaagtcctccgtgcacgcacctgtgaa i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95618326 32 + 96509753 gggctgaagtcctccgcgcacgcacctgtgaa i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16073780 32 - 16982598 gggctaaagtcctccgtacacgcacctgtgaa i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2917162 32 - 3785965 gggctaaagtcctccgtgcacgcacctgtgaa i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89589051 32 - 90373283 gggctaaagtcctccgtgcacgcacctgtgaa i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5464264 32 + 6149316 gggttaaagtcctccgtgcgcgcacctgtgaa i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4697144 32 - 5823884 gggctaaagtcctccgtgcacgcacctgtgaa i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57403943 32 + 159171411 gggctgccatcctctgtgcatgaacctgtgaa i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15524654 31 + 16356641 gggctgccgtcc-ctgtgcatggacctgtgaa i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 371043 31 + 1231380 gggctgccatcc-ctgtgcatggacctgtgaa i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22151667 31 + 22939663 gggctgaa-tcctacatatatggacctattaa i otoGar3.GL873542 I 80 I 1 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1932899 46 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I a score=266666.000000 s hg38.chr20_KI270871v1_alt 11144 27 + 58661 ctagaaaacaagccatctgcttaaagt s panTro5.chr20 65580987 27 + 66533130 ctagaaaacaagccatctgcttaaaat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350194 27 + 62195757 ctagaaaacaagccaattgcttaaaat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 760751 27 - 1017659 ctagaaaacaagccatctgcttaaagt i gorGor5.CYUI01015750v1 I 1 C 0 s nomLeu3.chr13 109251500 27 - 110113093 ctagaaaacaagccacttgcttaaaat i nomLeu3.chr13 I 1 C 0 s rheMac8.chr10 91970810 27 - 92844088 ctacaaaacaagtcatctgcttaaaac i rheMac8.chr10 I 1 I 310 s macFas5.chr10 95618359 27 + 96509753 ctacaaaacaagtcatctgcttaaaac i macFas5.chr10 I 1 I 310 s macNem1.NW_012014244v1 16073813 27 - 16982598 ctacaaaacaagtcatctgcttaaaac i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2917195 27 - 3785965 ctacaaaacaagtcatctgcttaaaac i cerAty1.NW_012001373v1 I 1 I 311 s chlSab2.chr2 89589084 27 - 90373283 ctacaaaacaagtcatctgcttaaaac i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5464297 27 + 6149316 ctacaaaacaagtcatctgcttaaaac i manLeu1.NW_012104365v1 I 1 I 309 s colAng1.NW_012114444v1 4697177 27 - 5823884 ctagaaaacaagtcatctgcttaaaac i colAng1.NW_012114444v1 I 1 C 0 s calJac3.chr5 57403976 27 + 159171411 ctggaaaacaagtcacctgcttaaagt i calJac3.chr5 I 1 I 1 s saiBol1.JH378156 15524686 27 + 16356641 ctggaaaacgagtcatctgctcaaagc i saiBol1.JH378156 I 1 I 1 s cebCap1.NW_016107870v1 371075 27 + 1231380 ctggaaaacaagtcacctgcttAAAGC i cebCap1.NW_016107870v1 I 1 I 1 s aotNan1.NW_018500483v1 1932945 27 + 11732439 ctggaaaacgagtcatctgcttaaagc i aotNan1.NW_018500483v1 I 46 I 1 s otoGar3.GL873542 22151699 27 + 22939663 ctagtaaacaagctttctgctggaagt i otoGar3.GL873542 I 1 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=5414.000000 s hg38.chr20_KI270871v1_alt 11171 7 + 58661 ---atcaaca---------- s panTro5.chr20 65581014 7 + 66533130 ---atcaaca---------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350221 7 + 62195757 ---atcaaca---------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 760778 7 - 1017659 ---atcaaca---------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251527 7 - 110113093 ---agcaacg---------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971147 7 - 92844088 ---atcaacg---------- i rheMac8.chr10 I 310 C 0 s macFas5.chr10 95618696 7 + 96509753 ---atcaacg---------- i macFas5.chr10 I 310 C 0 s macNem1.NW_012014244v1 16073840 7 - 16982598 ---atcaacg---------- i macNem1.NW_012014244v1 C 0 I 312 s cerAty1.NW_012001373v1 2917533 7 - 3785965 ---atcaacg---------- i cerAty1.NW_012001373v1 I 311 C 0 s chlSab2.chr2 89589111 7 - 90373283 ---atccacg---------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5464633 7 + 6149316 ---atcaacg---------- i manLeu1.NW_012104365v1 I 309 C 0 s colAng1.NW_012114444v1 4697204 7 - 5823884 ---atcaaca---------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404004 5 + 159171411 ----tcaat----------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15524714 6 + 16356641 ---cCCAGC----------- i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 371103 6 + 1231380 ---TCCAAC----------- i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1932973 6 + 11732439 ---tcaaac----------- i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22151726 20 + 22939663 ataataaatagtaggcaggc i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=2636553.000000 s hg38.chr20_KI270871v1_alt 11178 302 + 58661 gcaggacagctcttc-ccactcaaaaagggagaatgacagaggggccgccggccaccac-gtt-tccaatccggcggggcaaactccacgtgg--cacagctctggggacgctcctcg-ggggct---ctcagccccgccggcctctgcgggagcctcgggatcgttccccgtttcctaaagggcagctcgtgttcacagctgaggagcgccaccggcctgtttcctgcctgcagactccc-gaagttcgatgccctcttac-cttcgtccaacgctgt-ctctgccaatctagtttctgctggtatgaaactc s panTro5.chr20 65581021 305 + 66533130 gcaggacagctcttc-ccactcaaaaagggagaatgacagaggggctgccggccagcac-gtt-tccaatccggcggggcaaactccacgtgg--cacagctctggggacgctcctcg-ggggctctcctcagccccgccggcctctgcgggagcctcgggatcgttccccgtttgctaaagggcagcttgtgttcacagctgaggagcgccaccggcctgtttcctgcctgcagactccc-gaagttcgatgcccacttac-cttcgtccaacgctgt-ctctgccaatctagtttctgctggtatgaaactg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350228 305 + 62195757 gcaggacagctcttc-ccactcaaaaagggagaatgacagaggggctgccggccagcac-gtt-tccaatccggcggggcaaactccacgtgg--cacagctctggggacgctcctcg-ggggctctcctcagccccgccggcctctgcgggagcctcgggatcgttccccgtttgctaaagggcagctcgtgttcacagctgaggagcgccaccggcctgtttcctgcctgcagactccc-gaagttcgatgcccacttac-cttcgtccaacgctgt-ctctgccaatctagtttctgctggtatgaaactg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 760785 303 - 1017659 gcaggacagctcttc-ccactcaaaaagggagaatgacagaggggccgccggccaccac-gtt-tccaatccagcggggcaaactccacgtgg--cacagctctggggacgctcctcg-ggggct---ctcagccccgctggcctctgcgggagcctcgggatcgttccccgtttcctaaagggcagctcgtgttcacagctgaggagcgccaccggcctgtttcctgcctgcagactccc-gaagttcgatgccctcttac-cttcgtccaacgctgtcctctgccaatctagtttctgctggtatgaaactc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251534 303 - 110113093 gcaggacagcccttc-ccactcaaaaaggaagagtgacagaggggccgccggccaccacggtt-tccaatccagcggggcaaactccacgtgg--cacagctctggggacgctcctcg-ggggct---cttggccccgctggcctctgcgggaacctcggggtccttccccatttcctgaagggcagctcgtgttcacagctgaggagcgccaccagcctgtttcctgcctgcagactccc-gaagttcgatgccttcttac-cttcgtccaacactgt-ctctgccaatctagtttctgctggtatgaaactc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971154 290 - 92844088 gcaggaccgcccttc-ccactcagaaagggagaatgacagaggggccaccggccaccac-agt-------------gggcaaactccacgtgg--cacagctctggggacgctccttg-ggggct---ctcggccccaccggcctctgcgggagcctcggcgtcgctctccgtttcctgaagggcagcttgtgttcacagctgagga-cgccactggcctgtttcctgcctgcagactcccggaagttcgatgccttcttac-cttcgtctgacgctgt-ctctgcccatctagtttatgctggtatgaaactc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95618703 290 + 96509753 gcaggaccgcccttc-ccactcagaaagggagaaTGACAGAGGGGCCACCGGCCACCAC-AGT-------------GGGCAAACTCCACGTGG--CACAGCTCTGGGGACGCTCCTTG-GGGGCT---CTCGGCCCCACCGGCCTCTGCGGGAGCCTCGGCGTCGCTCTCCGtttcctgaagggcagcttgtgttcacagctgagga-cgccaccggcctgtttcctgcctgcagactcccggaagttcgatgccttcttac-cttcgtctgacgctgt-ctctgcccatctagtttatgctggtatgaaactc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074159 290 - 16982598 gcaggaccgcccttc-ccactcagaaagggagaatgacagaggggccaccggccaccac-agt-------------gggcaaactccacgtgg--cacagctctggggacgctccttg-ggggct---ctcggccccaccggcctctgcaggagcctcggcgtcgctctccgtttcctgaagggcagcttgtgttcacagctgagga-cgccaccggcctgtttcctgcctgcagactcccggaagttcgatgccttcttac-cttcgtctgacgctgt-ctctgcccatctagtttatgctggtatgaaactc i macNem1.NW_012014244v1 I 312 C 0 s cerAty1.NW_012001373v1 2917540 290 - 3785965 gcaggaccgcccttc-ccactcagaaagggagaatgacagaggggccgccggccaccac-agt-------------gggcaaactccacgtgg--cacagctctggggacgctccttg-ggggct---ctcggccccgccggcctctgcgggagcctcggcgtcgctctccgtttcctgaagggcagcttgtgttcacagctgagga-cgccaccggcctgtttcctgcctgcagactcccggaagttcgatgccttcttac-cttcgtctgacgctgt-ctctgcccatctagtttatgctggtatgaaactc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589118 291 - 90373283 gcaggaccgcccttc-ccactcagaaagggagaATGACAGAGGGGCCGCCGGCCACCAC-AGT-------------GGGCAAACTCCACGTGG--CACAGCTCTGGGGACGCTCCCTG-GGggct---ctcagccccgccggcctctgcaggagcctcggcgtcgttctccgtttcctgaagggcagcttgtgttcacagctgaggagcgccaccggcctgtttcctgcctgcagactcccggaagttcgatgccttcttac-ctttgtctgacactgt-ctctgcccatctagtttatgctggtatgaaactc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5464640 290 + 6149316 gcaggaccgcccttc-ccactcagaaagggagaatgacagaggggccgccggccaccac-agt-------------gggcaaactccacgtgg--cacagctctggggacgctccttg-ggggct---ctcggccccgccggcctctgcgggagccttggcgtcgctctccgtttcctgaagggcagcttgtgttcacagctgagga-cgccaccggcctgtttcctgcctgcagactcccggaagttcgatgccttcttac-cttcgtctgacgctgt-ctctgcccatctagtttatgctggtatgaaaccc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697211 290 - 5823884 gccggaccgcccttc-ccactcagaaagggagaaagacagaagggccgccagccaccac-acc-------------gggcaaactccacgtgg--cacagctctggggacgctccttg-ggggct---cttggccccaccggcctctgcgggagcctcgcggtcgttctccatttcctgaagggcagcttgtgttcacagctggggagcaccaccggcctg-ttcctgcctgcagactcccggaagttcgatgccttcttat-cttcgtctgacgctgt-ctctgccaatctagtttatgctggtatgaaactc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404009 301 + 159171411 gcaggacggt-gtcc-ctgctcaaaaacagagaatgacagaggggacaccagccgccac-ggtcttcaatccagcgaggcaaacgccatgtgg--cacagctctggggacgcgcctc--agggct---ctccaccccactggcctctgccggagcctcagggtcactccctgtttcctgaagggcagcttgtgttcacagctgaggggcgccactggtctgcttctggcctgcagactccc-gaagtccaatgccttcctcc-cttcgctcaacactgc-ccctgcccatctagtttctgctggtatgaagctc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15524720 304 + 16356641 GCAGGACGGC-ACCCGGTGCTCAGAAACGGAGAACGACAGAGGAGACGCCAGCCACCAC-GGCCTTCAACCCAGCGAGGCAAACGCCATGTGG--CACAGCTGTGGGGACGCACTTCGGGGGGCC---CTCCGCCCCGCTGGCCTCTGCCGGAGCCTCAGGGTCGCTCCCTGTTTCCTGCAGGGCAGCCTGTGTTCATGGCTGAGACGCGACACCGGCCCGTTTCCGGCCTGAAGACTCCCAGAAGTGCGACGCCTCCCTCC-CTTCACTCAGCACTGT-CCCTGCCGGTCT-GTTTCTGCTAGTGTGAAGCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 371109 304 + 1231380 ACAGGACGGC-ATCC-CTGCTCAAAAACAGAGAACGACAGAGGGGACGCCAGCCACCAC-GGTCTTCAATCCAGCGAGGCAAACGCCACGTGG--CACAGCTCTGGGGACGTGCCTCAGGGGACT---CTCCGCCCCGCTGGCCTCTGCTGGAGcctcagggtcattccctgtttcctgcagggcagcttgtgctcacagctgaggggcgccaccggcctgtttccggcctgcagactcccggaagtccgacgcctgcctcc-cttcactcaacactgt-ccctgccagtctagtttctgctggtatgaagctc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1932979 301 + 11732439 ccaggatggc-atcc-ctgctcaaaaaaggagaacgacagaggagatgccagccaccac-agccttcaatccagcgaggtgaacgccacgtgg--cacagctctgtggacgcgcctca-ggggct---ccccgccccgctggcctctgccagagcctcacgatcgttccccgtttcctgaagggca--cggtgctcacagctgaggggcgccaccggcctgtttccggcctgcagactcccagaagtccgatgccttcctcc-cttcgctcaacactgt-ccctgccagtctagtttctgctggtatgaagctc i aotNan1.NW_018500483v1 C 0 I 1060 s otoGar3.GL873542 22151746 268 + 22939663 ataggacaga-cagc-ccacccaggaaggcaga-tgctaaaggggtcactggctgctca-aaa-----agccagc-aggcggagtccaagcaatctccagctcaggaagccacctcca-gtggct---ct-ggctccatcatccttcccc--cgccccagggtcactctcccctgtcctcaggtca----------------------ctcttccagcacggcccctgcccaaagagtcacagaagtcc-atgcctcccttcactttggccatctccat-ccccacaggtcca-----cactggcgtaaaattc i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=294918.000000 s hg38.chr20_KI270871v1_alt 11480 34 + 58661 cccaaaacctctagggcctcctgaatatgccaca s panTro5.chr20 65581326 34 + 66533130 cccaaaacctctagggtctcctgaatatgccaca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350533 34 + 62195757 cccaaaacctctagggtctcctgaatatgccaca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761088 34 - 1017659 cccaaaacctctagggcctcctgaatatgccaca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251837 34 - 110113093 cccaaaacctccagggcctcctgaatatgccaca i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971444 34 - 92844088 cccaaaacctccagggcctcctgaatatgtcaca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95618993 34 + 96509753 cccaaaacctccagggcctcctgaatatgtcaca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074449 34 - 16982598 cccaaaacctccagggcctcctgaatatgtcaca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917830 34 - 3785965 cccaaaacctccagggcctcctgaatatgtcaca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589409 34 - 90373283 cccaaaacctccagggcctcctgaatatgtcaca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5464930 34 + 6149316 cccaaaacctccagggcctcctgaatatgtcaca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697501 34 - 5823884 cccaaaacctccagggcctcctgaatatgtcaca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404310 34 + 159171411 ccccaaaccctgtgggcctcctgaatacgtcaca i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15525024 32 + 16356641 CCCCAAACCCCGAGGGCCTCCTGAATACGACA-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 371413 34 + 1231380 ccccaaaccccgtgggcctcctgaatacgtcaca i cebCap1.NW_016107870v1 C 0 I 1223 s otoGar3.GL873542 22152014 19 + 22939663 cccaaaacct---------------tgtgtcaca i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1933280 1060 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I a score=416866.000000 s hg38.chr20_KI270871v1_alt 11514 61 + 58661 ggccgcaacgccgttagacaagaggcccctctgcacatccttccc-gatagctccatcttca----- s panTro5.chr20 65581360 61 + 66533130 ggccgcaacgccgttagacaagaggcccctctgcacatccttccc-gatagctccatcttca----- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350567 61 + 62195757 ggccgcaacgccgttagacaagaggcccctctgcacatccttccc-gatagctccatcttca----- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761122 61 - 1017659 ggctgcaacgccattagacaagaggcccctctgcacatccttccc-gatagctccgtcttca----- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251871 61 - 110113093 ggcctcaatgctgttagacaagaggcccc-ctgaacatccttcccagatagctccatcttca----- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971478 62 - 92844088 gggcgtgatgccgttagacaagaggccgccctgcacgtccttcccggatagctccatcttca----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619027 62 + 96509753 gggcgtgatgccgttagacaagaggccgccctgcacgtccttcccggatagctccatcttca----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074483 62 - 16982598 gggcgcgatgccgttagacaagaggccgccctgcacgtccttcccggatagctccatcttca----- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917864 62 - 3785965 gggcacgatgccgttagacaagaggccgccctgcacatccttcccggatagctccatcttca----- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589443 62 - 90373283 gggcgcgatgctgttagacaggaggccgccctgcacgtccttcccggatagctccatcttca----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5464964 62 + 6149316 gggcacgatgccgttagacaagaggccgccctgcacgtccttcccgggtagctccatcttca----- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697535 62 - 5823884 gggcgcgatgccgttagacaagaggcccctctgcacatccttcccagatagctccatcttca----- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404344 60 + 159171411 -ggtgcgatggtgttagacacaaggccgctctgcacctccttccc-gatagctccatctcca----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15525056 55 + 16356641 -----CGATGGTGTTAGACAC-AGGCCGCTCTGAACCTCCTTCCC-GATAACGCCACCTCCA----- i saiBol1.JH378156 C 0 I 1118 s otoGar3.GL873542 22152033 66 + 22939663 gggaccgatgccatcagacaagagggtgc-ccggatatctgtcctggaaaactgcatcttccttctc i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1933280 1060 + 11732439 I e cebCap1.NW_016107870v1 371447 1223 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I a score=20727.000000 s hg38.chr20_KI270871v1_alt 11575 4 + 58661 ggcc s panTro5.chr20 65581421 4 + 66533130 ggcc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350628 4 + 62195757 ggcc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761183 4 - 1017659 ggcc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251932 4 - 110113093 ggcc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971540 4 - 92844088 cgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619089 4 + 96509753 cgcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074545 4 - 16982598 cgcc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917926 4 - 3785965 cgcc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589505 4 - 90373283 ggcc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465026 4 + 6149316 cgcc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697597 4 - 5823884 ggcc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404404 4 + 159171411 cgcc i calJac3.chr5 C 0 I 410 s saiBol1.JH378156 15526229 3 + 16356641 ggc- i saiBol1.JH378156 I 1118 C 0 s otoGar3.GL873542 22152099 4 + 22939663 ggct i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1933280 1060 + 11732439 I e cebCap1.NW_016107870v1 371447 1223 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I a score=272880.000000 s hg38.chr20_KI270871v1_alt 11579 42 + 58661 tctgtggagacgg-----tgga-----ggctgcagccgcacacctggtgcct s panTro5.chr20 65581425 42 + 66533130 tctgtggagacgg-----tgga-----ggctgcagccgcacacctggtgcct i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350632 42 + 62195757 tctgtggagacgg-----tgga-----ggctgcagccgcacacctggtgcct i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761187 42 - 1017659 tctgtggagatgg-----tgga-----ggctgcagccgcacacctggtgcct i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251936 42 - 110113093 tctgcggagacag-----tggg-----ggctgcagccgcacacctggcacct i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971544 42 - 92844088 tctgtagagacgc-----tgga-----ggctgcggccgcacacctggcacct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619093 42 + 96509753 tctgtagagacgc-----tgga-----ggctgcggccgcacacctggcacct i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074549 42 - 16982598 tctgtagagacgc-----tgga-----ggctgcggccgcacacctggcactt i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917930 42 - 3785965 tctgtggagacgc-----tgga-----ggctgcggccgcacacctggcacct i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589509 42 - 90373283 tctgtggagatgg-----tgga-----ggctgcggctgcacacctggcacct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465030 42 + 6149316 tctgtggagacgc-----tgga-----ggctgcggccgcacacctggcacct i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697601 42 - 5823884 tctgtggagacgg-----tgga-----ggctgcggccgcacacctggcacct i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404818 47 + 159171411 tttgttgagatgg-----tggcatggatgcagtgatcgcacacgtggcatcc i calJac3.chr5 I 410 C 0 s saiBol1.JH378156 15526232 38 + 16356641 tctgctgagatgg-----ttgc---------gcggtcgcacatgtgggatcc i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22152103 44 + 22939663 tctgctgagatggctgcttgga-----tgcctgagtcacac---cggtctct i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1933280 1060 + 11732439 I e cebCap1.NW_016107870v1 371447 1223 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I a score=771.000000 s hg38.chr20_KI270871v1_alt 11621 8 + 58661 tcagcatg- s panTro5.chr20 65581467 8 + 66533130 tcagcatg- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350674 8 + 62195757 tcagcatg- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761229 8 - 1017659 tcagcatg- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251978 8 - 110113093 ccagcatg- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971586 4 - 92844088 t----atg- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619135 4 + 96509753 t----atg- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074591 4 - 16982598 t----atg- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917972 4 - 3785965 t----atg- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589551 4 - 90373283 t----acg- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465072 4 + 6149316 t----atg- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697643 8 - 5823884 tcagcacg- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404865 8 + 159171411 tccacaca- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526270 8 + 16356641 tcagcaca- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1934340 8 + 11732439 tcagcaca- i aotNan1.NW_018500483v1 I 1060 C 0 s otoGar3.GL873542 22152147 7 + 22939663 --gccacag i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e cebCap1.NW_016107870v1 371447 1223 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I a score=1455220.000000 s hg38.chr20_KI270871v1_alt 11629 134 + 58661 aggctgtctggccacacctgtgggcttctctccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagttctggtttcttacagca s panTro5.chr20 65581475 134 + 66533130 aggctgtctggccacacctgtgggcttctctccaaagcaggctttgccaacagtgaatctcccaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagttctggtttcttacagca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350682 134 + 62195757 aggctgtctggccacacctgtgggcttctctccaaagcaggctttgccaacagtgaatctcccaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagttctggtttcttacagca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761237 133 - 1017659 aggctgtctggccacacctgtgggcttctctccaaagcaggctttg-caacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagttctggtttcttacagca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109251986 134 - 110113093 aggctgtctggccacacctgtgggcttctctccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagctctggtttcttacagca i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971590 134 - 92844088 aggctgtctggccacacctgtgggcttctcgccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcacgttctggtttcttacagca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619139 134 + 96509753 aggctgtctggccacacctgtgggcttctcgccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcacgttctggtttcttacagca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074595 134 - 16982598 aggctgtctggccacacctgtgggcttctcgccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcatgttctggtttcttacagca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2917976 134 - 3785965 aggctgtctggtcacacctgtgggcttctcgccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcacgttctggtttcttacagca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589555 134 - 90373283 aggctgtctggccacacctgtgggcttctcgccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagttctggtttcttacagca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465076 134 + 6149316 aggctgtctggccacacctgtgggcttctcgccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcacgttctgatttcttacagca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697651 134 - 5823884 aggctgtctggccacacctgtgggcttctctccaaagcaggctttgccaacagtgaatctcctaatttaagaccctttgcaagctggacaggctgagcacct-cccaaaccttcaagttctggtttcttacagca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57404873 135 + 159171411 aggttgtatggccacacccatgcgcttcttgccaaagctggctttgccaacagtgaatctcataattcatgaccctttgcaagctgggcaggcagaacacctccccaaacctccaagttctggtttcttacatca i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526278 134 + 16356641 aggctgtctggccatacccatgggcttctcgccgaggctggctttttcaacagtgaatctcctcatttataaccctttgcaagctgagcaggccgagcacct-cccaaaccttcaagttctggtttcttacatca i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 372670 134 + 1231380 aggctgtctggccacacccatgggcttcttgccacagctggctttgccaacagcgaatctcctaatttataaccctttgtaaactgggcaggccgagcacct-cccaaaccttcaagttcgggtttcttacatca i cebCap1.NW_016107870v1 I 1223 I 47 s aotNan1.NW_018500483v1 1934348 134 + 11732439 aggctgtccggccacacccatgggcttctcaccaaagctggctttgccaacagtgaatctcctaatttatgaccctttgcaagatgggcaggccgagcacct-gtcaaaccttcgagttctggtttcttacatca i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22152154 132 + 22939663 aagttatcctgccgcacccgtggccatctctgcagagcaggccttgcc-atag-gaaaccccagatttattatcctttgccattaggacaggcctaagacct-cccaggtcttcaagttctggattcctttagca i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=363589.000000 s hg38.chr20_KI270871v1_alt 11763 74 + 58661 gttctgccctgaatgcc-----------t-----ttttttttttttttaatagtcttttggc-ggatcggccaggtgctgctctgaatctc s panTro5.chr20 65581609 71 + 66533130 gttctgccctgaatgcc-------------------ttttttttttttaatagtcttttggc-ggatcggccaggtactgttctgaatctc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350816 71 + 62195757 gttctgccctgaatgcc-------------------ttttttttttttaatagtcttttggc-ggattggccaggtgctgttctgaatctc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761370 75 - 1017659 gttctgtcctgaatgcc----------tt-----ttttttttttttttaatagtcttttggc-ggatcggccaggtgctgttctgaatctc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252120 76 - 110113093 gttctgccctgaattttt---------tt-----ttttttttttttttgatagtcttttggc-agatcggccaggtgccgttctgaatctc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971724 85 - 92844088 gttctgccctgaatgctttcttcttcttc-----tTTTTTTTCTTTTTTATAGTCTTTTGGC-GGATCGGCCAGgtgccattccaaatctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619273 85 + 96509753 gttctgccctgaatgctttcttcttcttc-----tTTTTTTTCTTTTTTATAGTCTTTTGGC-GGATCGGCCAGgtgccattccaaatctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074729 85 - 16982598 gttctgccctgaatgctttcttcttcttc-----tTTTTTTTCTTTTTTATAGTCTTTTGGC-GGATCGGCCAGGTGCCATTCAAaatctc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918110 89 - 3785965 gttctgccctgaatgctttcttcttcttcttc-ttttttTTTCTTTTTTATAGTCTTTTGGC-GGATCGGCCAGgtgccgttccaaatctc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589689 73 - 90373283 gttctgccctgaatgctttcttc-----------------tttttttttatagtcttttggc-ggatcggccaggtgccgttccaaatctc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465210 90 + 6149316 gttctgccctgaatgctttcttcttcttcttcttttttTTTTCTTTTTTATAGTCTTTTGGC-GGATCGGCCAGgtgccattccaaatctc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697785 84 - 5823884 gttctgccctgaatgctttcttcttcttc-----tTCTTCTTC-TTTTAATAGTCTTTTGGC-AGATCGGCCAGGTGCTGTTCCAaatctc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405008 49 + 159171411 ------------------------------------------ttttttgatattcttttgacaggatcgaccacgtgcccttctgaaatcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526412 50 + 16356641 -----------------------------------------ttttttttatattcttttgacaggatcgaccacgtgccattctgaaatcc i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1934482 49 + 11732439 ------------------------------------------ttttttgatattcttttgacgggatcaaccacgtgccattctgaaatcc i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22152286 24 + 22939663 -------------------------------------gttccttcctcagttgtctctttg------------------------------ i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e cebCap1.NW_016107870v1 372804 47 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I a score=2024398.000000 s hg38.chr20_KI270871v1_alt 11837 238 + 58661 cctgtttcctctcatactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctaaatatcccagttcatcacttaaaaattctgcctctgcccaacagtagcgcacagcccagtggagtctctgccaccaacaacacaaggacagccttccctccagcttccaacacctgcatcctcacttcctcctgagcccgcaccagaagca--cc-- s panTro5.chr20 65581680 238 + 66533130 cctgtttcctctcatactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctaaatatcccagttcatcacttaaaaattctgcctctgcccaacagtagcgcacagcccagcggagtctctgccaccaacaacacaaggacagccttccctccagcttccaacacctgcatcctcacttcctcctgagcctgcaccagaagca--cc-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61350887 238 + 62195757 cctgtttcctctcatactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctaaatatcccagttcatcacttaaaaattctgcctctgcccaacagtagcgcacagcccagcggagtctctgccaccaacaacacaaggacagccttccctccagcttccaacacctgcatcctcacttcctcctgagcctgcaccagaagca--cc-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761445 235 - 1017659 cctgtttcctctcatactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctaaatatcccagttcatcacttaaaaattctgcctctgcccaacagtagcgcacagcccagcggagtctctgccac---caacacaaggacagccttccctccagcttccaacacctgcatcctcacttcctcctgagcccgcaccagaagca--cc-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252196 238 - 110113093 cctgtttcctctcatactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttagctaaatatcccagttcatcacttaagaattctgtctctgcctgacagtagcgcacagcccagcggagtctctgccaccaataacacaaggacagccttccctccagcttccaacaactgcatcctcacttcctcctgagcccgctccagaagca--cc-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91971809 222 - 92844088 cctctttcctctctcactttactatgagcagcagaaacaaattaggctgcaccttccacactttgcttggaaatcttcttggctcaatatcccagttcatcacttaaaaattctgcctctgcccgacagcagtgcacagcctggcggattctctgccaccaacaacacaaggacagccttccctccagcttccaatagctgcatccccacttcctcctgagc-------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619358 222 + 96509753 cctctttcctctctcactttactatgagcagcagaaacaaattaggctgcaccttccacactttgcttggaaatcttcttggctcaatatcccagttcatcacttaaaaattctgcctctgcccgacagcagtgcacagcctggcggattctctgccaccaacaacacaaggacagccttccctccagcttccaatagctgcatccccacttcctcctgagc-------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16074814 222 - 16982598 cctctttcctctctcactttactatgagcagcagaaacaaattaggctgcaccttccacactttgcttggaaatcttcttggctcaatatcccagttcatcacttaaaaattctgcctccgcccgacagcagtgcacagcctggcggattctctgccaccaacaacacaaggacagccttccctccagcttccaatagctgcatccccacttcctcctgagc-------------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918199 222 - 3785965 cctctttcctctctcactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctcaatatcccagttcatcacttaaaaattctgcctctgcccgacagcagtgcacagcctggcggattctctgccaccaacaacacaaggacagccttccctccagcttccaatagctgcatccccacttcctcctgcgc-------------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589762 222 - 90373283 cctctttcctctctcactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctaaatatcccagttcatcacttaaaaattctgcctctgcccgacagtagtgcacagcctggcggattctctgccaccagcaacataaggacagccttccctccagcttccaatagctgcatctccacttcctcctgagc-------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465300 222 + 6149316 cctctttcctctctcactttactatgagcagcagaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctcaatatcccagttcatcacttaaaaattctgcctctgcccgacagcagtgcacagcctggcggattctctgccaccaacaacacacggacagccttccctccagcttccaatagctgcatccccacttcctcctgagc-------------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4697869 222 - 5823884 cctctttcctctctcactttactatgagcagccgaaataaattaggctgcaccttccacactttgcttggaaatcttcttggctaaatatcccagttcatcacttaaaaattctgcctctgcccgagagtagtgcacagcctggtggattctctgccaccaacaacacaaggacagccttccctccagcttccaacagctgcatccccacttcctcctgagc-------------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405057 216 + 159171411 tctctttcctctcatattttactatgagcagcagaaatatattaggctgcacctgccacactttgcttggaaa---tcttggctaaacatccaaattcctcacttaaaaattctgcctccgcccagcagcgccacacag-ccagcag---------------caacatggggacaaccttccctccagcttccaacaactg-atcctcacttcctcctgagctcactccagaagca------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526462 217 + 16356641 tctccttcctctcatattttactatgagcagcagaaataagttaggctgcacctgctacacttggcttggaaa---tcttggctaaacatccaaattcctcacttaaaaattctgcctccgccaggcagtgccgcacagcccggcag---------------cgacacggggacaaccttccctccagcttccaacaaccg-atcctcacttcctcctgagctcactccagaagca------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 372851 216 + 1231380 cctctttcctctcatattttactatgagcagcagaaataaattaggctgcacctgccacactt-gcttggaaa---tcttggctgaacatccacattcctcacttaaaaattctgcctccgcctggcagtgccgcacagcccggtag---------------caacacggggacaaccttccctccggcttccaacaactg-attctcacttcctcctgtgctcactccagaggca------ i cebCap1.NW_016107870v1 I 47 C 0 s aotNan1.NW_018500483v1 1934531 219 + 11732439 tctctttccactcatattttactatgagcagcagaaataaattaggctgcgcctgccatgctttgcttggaaa---tcttggctaaacatccaaactcctcacttaaaaattctgcctGTTCCAGGCAGTGCTGCACAGCCCGGCAG---------------CAACACGGCGACAGCCTTCCCTCCAGCTTCCAACAGCTG-AGCCTCGCTTCCTGCTGAGCACGCTGCAGACGCGCC---- i aotNan1.NW_018500483v1 C 0 I 23 s otoGar3.GL873542 22152310 203 + 22939663 --------ctctaaccttttactgcaagcagccaggagaaact-ggctgcactttccacaccttgcctagaaa---tcgtggctagctg-cccaacacatcacttacaaaacttgcctccaccagg-agtagagcacagcccagcaca-tcgctgcc-------------------cctttcctccagtgtccactgacatggtccccacatcctg-ggggtccacaccagcagca----cc i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=106072.000000 s hg38.chr20_KI270871v1_alt 12075 37 + 58661 ttcaacatccgtg-tccccacccaccatctcttcagga s panTro5.chr20 65581918 37 + 66533130 ttcaacatccgtg-tccccacccaccatctcttcagga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351125 37 + 62195757 ttcaacatccgtg-tccccacccaccatctcttcagga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761680 37 - 1017659 ttcaacatccgtg-tccccacccaccatctcttcagga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252434 37 - 110113093 ttcaacatccgtg-tccccgcgcaccatctcttcagga i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972031 18 - 92844088 --------------------cccaccatctcttcagga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619580 18 + 96509753 --------------------cccaccatctcttcagga i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075036 18 - 16982598 --------------------cccaccatctcttcagga i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918421 18 - 3785965 --------------------cccaccaTCTCTTCAGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89589984 18 - 90373283 --------------------cccaccatctcttcagga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465522 18 + 6149316 --------------------cccaccaTCTCTTCAGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698091 18 - 5823884 --------------------cccaccagctcttcagga i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405273 29 + 159171411 --------ccGGG-ACTCCACCCAGCAACTCTGCAGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526679 21 + 16356641 --------ccGGG-ACTCCACCCACCAACT-------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 373067 30 + 1231380 --------ccGGGAACTCCACCCACCAACTCTTCAGGA i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22152513 30 + 22939663 ---tgcattggtgtt-----tccaccctcccttgaggt i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1934750 23 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I a score=363831.000000 s hg38.chr20_KI270871v1_alt 12112 43 + 58661 cacctcag-tttcttccagcctgcacctcaaaatactcacgtcc s panTro5.chr20 65581955 43 + 66533130 cacctcag-tttcttccagcctgcacctcaaaatactcacatcc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351162 43 + 62195757 cacctcag-tttcttccagcctgcacctcaaaatactcacatcc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761717 44 - 1017659 cacctcagttttcttccagcctgcacctcaaaatactcacgtcc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252471 43 - 110113093 cacctcag-tttcttccagcctgcatctcaaaatactcacgtcc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972049 39 - 92844088 cacctcag-tttcttccagccTGCACCTCAAAAT----atgtcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619598 39 + 96509753 cacctcag-tttcttccagccTGCACCTCAAAAT----atgtcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075054 39 - 16982598 cacctcag-tttcttccagccTGCACCTCAAAAT----atgtcc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918439 39 - 3785965 CACCTCAG-TTTCTTCCAGCATGCACCTCAAAAT----atgtcc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590002 39 - 90373283 cacctcag-tttcttccagccTGCACCTCAAAAT----atgtcc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465540 39 + 6149316 CACCTCAG-TTTCTTCCAGCATGCACCTCAAAAT----atgtcc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698109 39 - 5823884 cacctcag-tttcttccagcctGCACCTCAAAAT----atgtcc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405302 40 + 159171411 CACCTCGG----CTTCCAGCCTGCACCTCAAAATActcatgtcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526700 41 + 16356641 --CCTCGG-CTTCTTCCAGCCTGCCCCTCAAAATACTCATGTCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 373097 38 + 1231380 CACCTCGG-CTTCTT-----CTGCACCTCAAAATActcaggtac i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1934773 43 + 11732439 CACCTCGG-CTCCTTCCAGCCCGCACCTCAAAATACTCATGTCC i aotNan1.NW_018500483v1 I 23 C 0 s otoGar3.GL873542 22152543 41 + 22939663 ggtctcag-ctc--tgcaacttgcacctcaaaactgctacggcc i otoGar3.GL873542 C 0 I 16 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=4170820.000000 s hg38.chr20_KI270871v1_alt 12155 466 + 58661 aaaatctcatccaaatcccatcagttca-aaaagtcccaaatttcatcatctgaagtcatcagaggccgggcacagtggctcacgcctgtaatcccagcactttgggaggccgagacgggcagagcccttgaggtcaggagcttcagaccagcctgg----ccaacatggtgaaaccccatctctacc-aaaaataacaaaacttagccgggcgtagtagcaggtgtctgtaatcccagctactcaggaggctgaggcaggagaatcacttgtacccgggaagtggaggttgcagtgagccaagatcgcaccactgcattccagcctgggcgaaagagc--aagactccatctc--aaaataataat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgattgcaggtgtgcatcagcctgggg---ctggagtcctccacgcatgaacctgtgattcta--g s panTro5.chr20 65581998 466 + 66533130 aaaatctcgtccaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgagacgggcagagcccttgaggtcaggagcttgagaccagcctgg----ccaacatggtgaaaccccatctctacc-aaaaataacaaaacttagccaggcgtagtagcaggtgtctgtaatcccagttactcaggaggctgaggcaggagaatcacttgtacccgggaagcggaggtcgcagtgagccaagatcgcaccactgcattccagcctgggcgaaagagc--aagactccatctc--aaaataataat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgattgcgggtgtgcatcagcctgggg---ctggagtcctccacgcacggacctgtgattcta--g i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351205 466 + 62195757 aaaatctcgtccaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccgagacgggcagagcccttgaggtcaggagcttgagaccagcctgg----ccaacatggtgaaaccccatctctacc-aaaaataacaaaacttagccaggcgtagtagcaggtgtctgtaatcccagttactcaggaggctgaggcaggagaatcacttgtacccgggaagcggaggtcgcagtgagccaagatcgcaccactgcattccagcctgggcgaaagagc--aagactccatctc--aaaataataat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgattgcgggtgtgcatcagcctgggg---ctggagtcctccatgcacggacctgtgattcta--g i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 761761 465 - 1017659 aaaatctcatccaaatcccgtcagttca-aaaagtcccaaatttcatcatctaaagtcatcagagg-cgggcacagtagctcacgcctgtaatcccagcactttgggaggccgagacgggcagagcccttgaggtcaggagcttgagaccagcctgg----ccaacatggtgaaaccccatctctaccaaaaaataacaaaacttagccgggcgtagtagcaggtgtctgtaatcccagctactcaggaggctgaggcaggagaatcacttgtacccgggaagcggaggttgcagtgagccaagatcgcaccactgcattccagcctgggtgaaagagc--aagactccatctc--aaaataataat-aataaat-----aaaataataaagtcatcagaatca-ttaaatcaggtgtgtgtgactgtgggtgtgcatcggcctgggg---ctggagtcctccacgcacagacctgtgattcta--g i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252514 466 - 110113093 aaaatctcatctaaatcccatcggttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacagtggctcacgcctgtaatcccagcactttgggaagccgagatgggcagagcccttgaggtcaggggcttgagaccaacctgg----ccaacatggtgaaaccccatctctacc-aaaaataaaaaaacctagccaggcgtagtagcaggtgtctataataccagctactcgggaggctgaagcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcataccactgcactccagcctgggcgaaagagc--aagactccatctc--aaaataataat-aataaat-----aaaataataaagtcatccgcatcgtttaaatcagttgtgtgtgactgtgggtgtgcatcatcctgggg---ttggagccctccacgcacggacctgtgattcta--g i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972088 469 - 92844088 aaaatctcatctaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacggtggctcctgcctttaatcccagcactgtgggaggccgagacaggcagagcctttgaggtcaggaacttgagaccggcctggccaaccaacatggtgaaaccccatctccacc-aaaaataacaaaaattagccgggtgtggtggcaggtatctgtaatcccagctactcaggaagctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcaccaccgcactccagcctgggctacagagc--gagactccatctc---aaacaaaaat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgactctgggtgtgaagcatgctgggg---ctgaaatcctccacgcgtggacctgtgattcca--g i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95619637 469 + 96509753 aaaatctcatctaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacggtggctcccgcctttaatcccagcactttgggaggccgagacaggcagagcccttgaggtcaggaacttgagaccggcctggccaaccaacatggtgaaaccccatctccacc-aaaaataacaaaaattagccgggcgtggtagcaggtatctgtaatcccagctacgcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcaccaccgcactccagcctgggtgacagagc--gagactccatctc---aaacaaaaat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgactctgggtgtgaagcatgctgggg---ctgaaatcctccacgcgtggacctgtgattcca--g i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075093 469 - 16982598 aaaatctcatctaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacggtggctcccgcctttaatcccagcactttgggaggccgagacaggcagagcccttgaggtcaggaacttgagaccggcctggccaaccaacatggtgaaaccccatctccacc-aaaaataacaaaaattagccaggcgtggtagcaggtatctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcaccaccgcactccagcctgggtgacagagc--gagactccatctc---aaacaaaaat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgactctgggtgtgaagcatgctgggg---ctgaaatcctccacgcgtggacctgtgattcca--g i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918478 469 - 3785965 aaaatctcatccaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacagtggctcccgcctttaatcccagcactttgggaggccgagacaggcagagcccttgaggtcaggaacttgagaccggcctggccaaccaacatggtgaaaccccatctctacc-aaaaataacaaaaattagccgggcgtggtagcaggtatctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgcaccaccgcactccagcctgggtgacagagt--gagactccatctc---aaacaaaaat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgactctgggtgtgaagcatgctgggg---ctgaagtcctccacgcgtggacctgtgattcca--g i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590041 469 - 90373283 aaaatctcatttaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacggtggctcccgcctttaatcccagcactttgggaggccgagacaggcagagcccttgaggtcaggaacttaagaccggcctggccaaccaacatggtgaaaccccatctccacc-aaaaataacaaaaattagccaggcgtggtagcaggtatctgtaatcccagctactcaggaggccgaggcaggagaatcacttgaacccgggaggcagaggttgtagtgagccgagatcacgccaccgcactccagcctgggtgacagagt--gagactccatctc---aaacaaaaat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgattctgggtgtgacgcaccctgggg---ctgaagtcctccacgcgtggacctgtgattcca--g i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5465579 469 + 6149316 aaaatctcatctaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccggtcacggtggctcccgcctttaatcccagcactttgggaggccaagacaggcagagcccttgaggtcaggaacttgagaccggcctggccaaccaacatggtgaaaccccatctctacc-aaaaataacaaaaattagccgggcgtggtagcaggtatctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgagatcgcaccaccgcactccagcctgggtgacagagt--gagactccatctc---aaacaaaaat-aataaat-----aaaataataaagtcatcagaatcatttaaatcaggtgtgtgtgactctgggtgtgacgcatgctgggg---ctgaagccctccacgcgtggacctgtgattcca--g i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698148 472 - 5823884 aaaatctcatccaaatcccatcagttca-aaaagtcccaaatttcatcatctaaagtcatcagaggccgggcacggtggctcccacctttaatcccagcactttgggaggccgagacaggtagagcccttgaggtcaggaacttgagaccagcctggccaaccaacatggtgaaatcccatctctacc-aaaaatgacaaaaattagccgggagtggtagcaggtatctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccgtgatcacaccaccgcactccggcctgggtgacagagt--gagactccatctc---aaacaaaaataaataaat-----aaaataat-aagtcatcagaatcatttaaatcaggtgtgtgtgattctgggtgtgaagcatcctggggcttctgaagtcctccacgccaggacctgtgattcta--g i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405342 465 + 159171411 gaaatctcattcacatcccatcagttca-aaaaatcacaaatttcatcatctaaagtcatcagaggccaggtgtggcggctcacacctgtaatcccagcactttgggaggccgaggcaggcggatcacttgaggtcaggagttcgagatcagcctgg----ccaacatggtgaaacctcatctctact-aaaaat-ac-aaaattagctgggtgtggtggcgggcacctgtaatcccagctactcaggaggctgagacagaagaatcacttgaacc------acagaagttgcggtgagctgagattgtgccactgcactccagcct-ggtgacagagtgagagactccgtcccaaaaaatgacagt-aataaataaataaaaataataaagtcatccgaatcatttaaatcaggcgtgtgtgattctgggtgtgcatcttcctgggg---cgaacgtcctctacacacggacctgtgatccta--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15526741 466 + 16356641 GAAATCTCATTCACATCCCATCAGTTCA-AAAAACCACAAATTTCATCATCTAAAGTCATCAGAggccggggatgttggctcacacctgtaatcccagcactttgtgaggccaaggcgggcagatcacttgaggtcaggagttcgagactagcctgg----ccaacatggtgaaaccccgtctctact-aaaaat-acaaaaattagccgggtgtggtggcgggcacctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacccgggaggtggacgttgtggtgagccactatggtgccactgcactccagcct-ggcgacagagcgagagactccctctcaaaaaacaatgat-aataaat-----aaaataataaAGTCATCCGAATCACGTAAATCAGGTTTGTGTGATTCTGGGTGTGCGTCTTCCC-GGG---CGAGCGTCCCCCACGCACGGACCTGTGACCCTA--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 373135 466 + 1231380 aaaatctcattcacatcccatcagttca-aaaaatcacaaatttcatcatctaaagtcatcagaggccaggtgtggtggctcacacctgtaatcccagcactttgggaagccaaggcaggcggatcac--aaggtcaggagttcaagaccagcctgg----ccaacatagtgaaaccctgtctctact-aaaaat-acaaaaattagccgggtgtggtggcgggcgcctgtaatcccagctactcaggaggctgaggcagaagaatcacttgaaccccggaggtggacgttgcggtgagccacgattgtgccactgcactccagcct-ggtgacagagcgagagactccgtctaaaaaaatagcaataaataaat-----aaaataataaaatcatccgaatcacttaaatcaggtgtgtgtgattctaggtgtgcatcttcct-ggg---tgaacgtcctccacacacggacctgtgatcctag-- i cebCap1.NW_016107870v1 C 0 I 16 s aotNan1.NW_018500483v1 1934816 461 + 11732439 GAAATTGCATTCACATCCCATCGGTTCAGAAAAATCACAAATTTCATCATCTAAAGTCATCAGAggccaggtgtggtggctcacacctataatcccagcactttgggaggccaaggcgggcggatcacttgaggtcaggagttcgagaccagcctgg----ccaacatagtgaaacctcgtttctact-aaaaat-acaaaaattagccgagtgtggtggtgggcacctgtaatcccagctactcaggaggctgaggtggaagaatcacttgaaccctggaggtggagtttgcagtgagccgagatcgtgccactgcactccagcct-ggcaacagagggagagactccgtctcaaaaaataacaat-aataaataaat-aaaaTAATAAAGTCATCCGAATCATTTAAATCAGGTGC------------GTGTGCATCTTCCTGGGG---CGAACGTCCTCCACGCACAGACCTGTGATCCTA-G- i aotNan1.NW_018500483v1 C 0 I 81 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22152584 16 + 22939663 I a score=72612.000000 s hg38.chr20_KI270871v1_alt 12621 16 + 58661 gaaacgag--CCCTTGGC s panTro5.chr20 65582464 16 + 66533130 gaaaccag--cccctggc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351671 16 + 62195757 gaaaccag--CCCCTGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762226 16 - 1017659 gaaacgag--CCCCTGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252980 18 - 110113093 gaaacaagACCCCCTGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972557 16 - 92844088 gaaacaag--CCCCCGcg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620106 16 + 96509753 gaaacaag--CCCCCGcg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075562 16 - 16982598 gaaacaaA--CCCCCGca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918947 16 - 3785965 gaaacaag--CCCCCGca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590510 16 - 90373283 gaaacaag--cccctgca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466048 16 + 6149316 gaaacaag--CCCCCGca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698620 16 - 5823884 gaaacaag--CCCCCGca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405807 16 + 159171411 gaaaGAAG--CCTCTGCC i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15527207 11 + 16356641 GAAGGAAG--T-----CC i saiBol1.JH378156 C 0 I 1 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1935277 81 + 11732439 I e cebCap1.NW_016107870v1 373601 16 + 1231380 I e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22152584 16 + 22939663 I a score=93643.000000 s hg38.chr20_KI270871v1_alt 12637 12 + 58661 TCACCCGGTTCT s panTro5.chr20 65582480 12 + 66533130 tcacccggttct i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351687 12 + 62195757 TCACCCGGTTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762242 12 - 1017659 TCATCCGGTGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109252998 12 - 110113093 TCACCCGGTTCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972573 12 - 92844088 tcacgcagttct i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620122 12 + 96509753 tcacgcagttct i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075578 12 - 16982598 tcacgcagttct i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918963 12 - 3785965 tcacccagttct i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590526 12 - 90373283 tcacccagctct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466064 12 + 6149316 tcacgcagttct i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698636 12 - 5823884 tcacccagttct i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405824 12 + 159171411 TCACCCAGTTCC i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15527219 12 + 16356641 TCACCCAGTTCC i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 373617 12 + 1231380 TCACCCAGTTCC i cebCap1.NW_016107870v1 I 16 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1935277 81 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22152584 16 + 22939663 I a score=388414.000000 s hg38.chr20_KI270871v1_alt 12649 52 + 58661 GATGTCACACCCGCGCTTGTAGGCGTTTGCCACAGCCGCACGCGGCTCCCGG s panTro5.chr20 65582492 52 + 66533130 gatgtcacgcccacgcttgtaggcatttggcacagccacacgcggctcccgg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351699 52 + 62195757 GATGTCACGCCCACGCTTGTAGGCGTTTGGCACAGCCACACGCGGCTCCCGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762254 51 - 1017659 GATGTCACGCCCACGCTTGTAGGCATTTGGCACAGCCGCACGCGGCT-CCGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253010 52 - 110113093 GATGTCACACCCACGCTTGCAAGTGTTTGGCACAGCCGCACGCGGCTCCCGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972585 52 - 92844088 gaagtcgcgcccacacttgtaggtgtttagcacagcagcacgcggctcccgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620134 52 + 96509753 gaagtcgcgcccacacttgtaggtgtttagcacagcagcacgcggctcccgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075590 52 - 16982598 gaagtcgcgcccacacttgtaggtgtttagcacagcagcacgcggctcccgg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2918975 52 - 3785965 gaagtcgcgcccacacttgtaggtgtttagcacagcagcacgtggttcccgg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590538 52 - 90373283 gaagtcgcgcccacactggtaggtgtttggcacagcagcacgcggctcccgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466076 52 + 6149316 gaagttgcgcccacacttgtaggtgtttagcacagcagcacgcggctcccgg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698648 52 - 5823884 gaagtcacgcccacacttgcaggtgtttggcacagcagcaggcgactcccgg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405836 52 + 159171411 AAAGTCGCATCCGCCCCGGGAGGCGTTTGGTGCCGCAGCACGCAGCTCCCGG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15527231 52 + 16356641 GAAGTCACATCCGCGGCAGGAGGTGTTCAGTGCCGCAGCACGCAGCTCCCAG i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 373629 52 + 1231380 GAAGTCACATCCGCGCCGGGAGGCGTTCGGTGCCGCAGCACGCAGCTCCCGA i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22152600 52 + 22939663 gatgttagtgccacacgtccatgcagtggctgtggcagcacctgtctcccag i otoGar3.GL873542 I 16 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e aotNan1.NW_018500483v1 1935277 81 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I a score=467690.000000 s hg38.chr20_KI270871v1_alt 12701 70 + 58661 TATTAAAGTCtggattcatgtgcaacggctcctgtaactaagtgccgctg-gagtgtgtaaca------acagatgt s panTro5.chr20 65582544 70 + 66533130 tattaaagtctggattcatgtgcaacggctcctgtaactaagtgccgctg-gagtgtataaca------acagatat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351751 70 + 62195757 TATTAAAGTCtggattcatgtgcaacggctcctgtaactaagtgccgctg-gagtgtgtaaca------acagatgt i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762305 70 - 1017659 TATTAAAGTCtggattcatgtgcaacggctcctgtaactaagtgccgctg-gagtgtataaca------acagatgt i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253062 69 - 110113093 TATTAAAGTCTGGATGCATGtgctacagctcctgtaactaagtgccgct--gagtgtgtaaca------acagatgt i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972637 67 - 92844088 gattaaagtcTGGATTCACGTGCTACAGCTCCTGTAACTAAGTGCCGCTG-GAGTGT---aca------acagactt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620186 67 + 96509753 gattaaagtcTGGATTCACGtgctacagctcctgtaactaagtgccgctg-gagtgt---aca------acagactt i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075642 67 - 16982598 gattaaagtcTGGATTCACGTGCTACAGCTCCTGTAACTAAGTGCCGCTG-GAGTGT---aca------acagactt i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919027 67 - 3785965 gattaaagtcTGGATTCACGTGctacagctcctgtaactaagtgccgctg-gagtgt---aca------acagactt i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590590 70 - 90373283 gattgaagtctggattcatgtgctacagctcctgtaactaagtgccgctg-gaatgtacaaca------acagactt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466128 67 + 6149316 gattaaagtcTGGATTCACGTGCTACAGCTCCTGTAACTAAGTGCCGCTG-GAGTGT---ACA------ACAGACTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698700 70 - 5823884 gattaaagtcTGGATTCACGTGctacagctcccgtaaccaagtgccgctg-gagtgtacaaca------acagactt i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57405889 74 + 159171411 TGTGAAGATCCAGGGTCAtttgctgcagctcctgtaactaagtgccactgtgtgtgt---gtgtgtaacaaagacat i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15527284 66 + 16356641 CGTGACG--TCAGAGTCAtttgctgcagctcctgcagctaagtgccaccgtgtgtgt---gta------acagacat i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 373682 68 + 1231380 TGTGAACGTCCAGAGTCAtttgctgcagctcctgtagctaagtgccactgtgtgtgt---gta------acagacat i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1935358 62 + 11732439 TATGAACGTCCGGAGTCATTTGCTGCAGCTCCTGTaactaa--------gtgtgtgt---gta----acagagacat i aotNan1.NW_018500483v1 I 81 C 0 s otoGar3.GL873542 22152652 60 + 22939663 --------tgcgagggctgccacaacaaatccacaaaccacaaactggtg-gcttaa--aaca------gcagacag i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e mm10.chr2 181097375 2383 + 182113224 I e canFam3.chr24 47074498 2313 + 47698779 I a score=105964.000000 s hg38.chr20_KI270871v1_alt 12771 9 + 58661 ttgttcttt s panTro5.chr20 65582614 9 + 66533130 ttgttcttt i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351821 9 + 62195757 ttgttcttt i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762375 9 - 1017659 ttgttcttt i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253131 9 - 110113093 ttgttcttt i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972704 9 - 92844088 ttgttcttt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620253 9 + 96509753 ttgttcttt i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16075709 9 - 16982598 ttgttcttt i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919094 9 - 3785965 ttgttcttt i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89590660 9 - 90373283 ttgttcttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466195 9 + 6149316 TTGTTCTTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4698770 9 - 5823884 ttgttcttt i colAng1.NW_012114444v1 C 0 I 362 s calJac3.chr5 57405963 9 + 159171411 ttgtccttt i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15527350 9 + 16356641 ttgtcattt i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 373750 9 + 1231380 ttgtccttt i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1935420 9 + 11732439 ttgtccttt i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22152712 9 + 22939663 gtgttctct i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181099758 9 + 182113224 ttactctct i mm10.chr2 I 2383 C 0 e dasNov3.JH567899 92928 324 + 555560 I e canFam3.chr24 47074498 2313 + 47698779 I a score=314263.000000 s hg38.chr20_KI270871v1_alt 12780 36 + 58661 cacagtcctagacgc-cag-agtccaaaatcaaggtgc s panTro5.chr20 65582623 36 + 66533130 cacagtcctagaggc-cag-agtccaaaatcaaggtgc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351830 36 + 62195757 cacagtcctagaggc-cag-agtccaaaatcaaggtgc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762384 36 - 1017659 cacagtcctagaggc-cag-agtccaaaatcaaggtgc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253140 36 - 110113093 cacagtcccagaggc-cag-agtccaaaatcaaggtgt i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972713 36 - 92844088 caccgtcccagaggc-cag-agtccaaaaccaagtggc i rheMac8.chr10 C 0 I 36 s macFas5.chr10 95620262 36 + 96509753 caccgtcccagaggc-cag-agtccaaaaccaagcggc i macFas5.chr10 C 0 I 24 s macNem1.NW_012014244v1 16075718 36 - 16982598 caccgtcccagaggc-cag-agtccaaaaccaagcggc i macNem1.NW_012014244v1 C 0 I 24 s cerAty1.NW_012001373v1 2919103 36 - 3785965 caccgtcccagaggc-cag-agtccaaaaccaagcggc i cerAty1.NW_012001373v1 C 0 I 12 s chlSab2.chr2 89590669 36 - 90373283 caccgtcccagaggc-cag-agtccaaaaccaagtggc i chlSab2.chr2 C 0 I 29 s manLeu1.NW_012104365v1 5466204 36 + 6149316 CACCGTCCCAGAGGC-CAG-AGTCCAAAACCAAGTggc i manLeu1.NW_012104365v1 C 0 I 45 s calJac3.chr5 57405972 36 + 159171411 cacagtcccagagga-cag-agtccaaaatcgaggtgc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15527359 36 + 16356641 cacagtcccagagga-cag-agtccaaaatcgaggtgc i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 373759 36 + 1231380 cccagtcccagagga-cag-agtccaaaatcgaggtgc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1935429 36 + 11732439 cacagtcccagagga-cag-agtccaaaatcgaggtgc i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22152721 31 + 22939663 cacagtcctggaggc-cagaaggccaacattg------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181099767 31 + 182113224 gacagtcctggagacacag-------aagtcaaggtgt i mm10.chr2 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e canFam3.chr24 47074498 2313 + 47698779 I e colAng1.NW_012114444v1 4698779 362 - 5823884 I a score=4226842.000000 s hg38.chr20_KI270871v1_alt 12816 494 + 58661 gggcggggcctgctccctccgaaagctccagggaagggtcctttctgcctcttccagcttctgtggctccaggcagcccttggcttgtggccgcatcacttca--gtctctctctccatcct-agctgg--ctatcacctc--tgt--gtgcttccaaatctccctctccttgtaaggacactcg-----ttgttggactcagggcccgcccggaaaatccagg----------atgatc---tGAGATCGTCCTGATAGGTTCCAGAGCAGAAGAGTGTCTCTAGGAGGCAGAAACCAGCATCCAACCCACTGGAAGCCCCTGCCCCACCAAGGGCTTTC---AGACATGGAACTGCTTGGGGACGGCTCTGGGC-CTGGGCAGGCCTGGCAGGTGCATTCGCCTTCCACCTCTCCTGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGACAGCCGGCACTCTGACAGCCGTGGGCTTTGGGCCTGAAGGAGAGGCAGCAGGCGCCATCAGCACCTGAGTTACCAC s panTro5.chr20 65582659 494 + 66533130 gggcggggcctgctccctccgaaagctccagggaagggtcctttctgcctcttccagcttctgtggctccaggcagcccttggcttgtggccgcatcgcttca--gtctctctctccatcct-agctgg--ctctctcctc--tgt--gtgcttccaaatctccctctccttgtaaggacactca-----ttgttggactcagggcctgcccggaaaatccagg----------atgatc---tGAGATCGTCCTGATAGGTTCCAGAGCAGAAGAGTGTCTCTAGGAGGCAGAAACCAGCATCCAACCCACTGGAAGCCCCTGCCCCACCAAGGGCTTTC---AGACATGGAACTGCTTGGGGACGGCCCTGGGC-CTGGGCAGGCCTGGCTGGTGCACTCGCCGTCCACCTCTCCTGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGACAGCCGGCACTCTGACAGCCGTGGGCTTTGGGCCTGAAGGAGAGGCAGCAGGTGCCATCAGCACCTGAGTTACCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61351866 494 + 62195757 ggacggggcctgctccctccgaaagctccagggaagggtcttttctgcctcttccagcttctgtggctccaggcagcccttggcttgtggccgcatcgcttca--gtctctctctccatcct-agctgg--ctgtctcctc--tgt--gtgcttccaaatctccctctccttgtaaggacactca-----ttgttggactcagggcctgcccggaaaatccaga----------atgatc---tGAGATCGTCCTGATAGGTTCCAGAGCAGAAGAGTGTCTCTAGGAGGCAGAAACCAGCATCCAACCCACTGGAAGCCCCTGCCCCACCAAGGGCTTTC---AGTCATGGAACTGCTTGGGGACGGCCCTGGGC-CTGGGCAGGCCTGGCTGGTGCACTCGCCGTCCACCTCTCCTGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGACAGCCGGCACTCTGACAGCCGTGGGCTTTGGGCCTGAAGGAGAGGCAGCAGGTGCCATCAGCACCTGAGTTACCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762420 494 - 1017659 aggcggggcctgctccctccgaaagctccagggaagggtcctttctgcctcttccagcttctgtggctccaggcagcccttggcttgtggccgcatcgcttca--gtctctctctccatcct-agctgg--ctgtcacctc--tgt--gtgcttccaaatctccctctccttgtaaggacactca-----ttgttggactcagggcccgcccggaaaatccagg----------atgatc---tgagattgtcctgatAGGTTCCAGAGCAGAAGAGTGTCTCTAGGAGGCAGAAACCAGCATCCAACCCACTGGAAGCCCCTGCCCCAACAAGGGCTTTC---AGACATGGAACTGCTTGGGGACAGCCCTGGGC-CTGGGCAGGCCTGGCAGGTGCATTCGCCGTCCACCTCTCCTGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGACAGCCGGCACTCTGACAGCCGTGGGCTTTGGGCCTGAAGGAGAAGCAGCAGGTGCCATCAGCACCTGAGTTACCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253176 490 - 110113093 gggcggggcctgctccctccgacagccccaggaaagggtccttcctgcctcttccagcttctgtggctccaggcagcccttggcttgtggccacactgcttcactctctctctctccgtcct-agttgg--ctgtctcctc--tgt--gtgtttccaaatctccctctccttgtaaggacactca-----tcgtcagactcagggcccgcctggaaaatccagg----------atgatc---CGAGATCGTCCTGATAGGTTCCAGGGCAGAAGAGTGTCTCTAGGAGGCAGAAACCAGCATCCAACCCACTGGAAGCCCCTGCCCCACCAAGGGCTTTC---AGACATGGAACTGCTTGGGGACGGC------C-CTGGGCAGGCCTGGCAGGTGCATTCGTGGCCCACCTCTCCTGCTCAGCAGGCCCTCCTGCA-ACCTACCTCGGCACCCGGCACTCTGACAGCCGTGGGCTTTGGGCCTGAAGGAGAGGCAGCAGGTGCCATCAGCACCTGAGTCACCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91972785 490 - 92844088 gggcggggcctgctccctccagcagctccggggaacgctcctttctgcctcttccagcttctgtggctccaggcagccttcggctggtggccacatcacttta--gtccctctc--catcct-agttgg--ctgtctcctc--cat--gtgtttcCCCATCTCCCTCTCCTTGTAAGATCACTCA-----TCGATGGACTC--GGCCCGCCCCGAAAATCCAGG----------ATGATC---TGAGATTGTCCTGACAGGTTCCAGGACAGAAAGGTGTCTCCAGGAGGCAGAGACCAGCATCCAACCCACCAGAAGCTCCTGCCCCATCAAGGGCTTTC---CGACACGGAACTGCATGAGCACGGCCCTGGGC-CTGGGCAGGCCTGGCAGGTGAATGCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGGGCCGGAAGGAGAGGCAGCAGGTGCCGCCGGTGCCTGAGTCACCAC i rheMac8.chr10 I 36 C 0 s macFas5.chr10 95620322 490 + 96509753 gggcggggcctgctccctccagcagctccggggaacgctcctttctgcctcttccagcttctgtggctccaggcagccctcggctggtggccacatcacttta--gtccctctc--catcct-agttgg--ctgtctcctc--cat--gtgtttccccatctccctctccttgtaagatcactca-----tcgctggactc--ggcccgccccgaaaatccagg----------atgatc---tGAGATTGTCCTGACAGGTTCCAGAACAGAAAGGTGTCTCCAGGAGGCAGAGACCAGCATCCAACCCACCAGAAGCTCCTGCCCCATCAAGGGCTTTC---CGACACGGAACTGCATGAGCACGGCCCTGGGC-CTGGGCAGGCCTGGCAGGTGAATGCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGGGCCGGAAGGAGAGGCAGCAGGTGCCGCCGGTGCCTGAGTCACCAC i macFas5.chr10 I 24 C 0 s macNem1.NW_012014244v1 16075778 490 - 16982598 gggcggggcctgctccctccagcagctccagggaacgctcctttctgcctcttccagcttctgtggctccaggcagccctcggctggtggccacatcacttta--gtccccctc--catcct-agttgg--ctgtctcttc--cat--gtgtttcCCCATCTCCCTCTCCTTGTAACAACACTCA-----TCGCGGGACTC--GGCCCGCCCCGAAAATCCAGG----------ATGATC---TGAGATTGTCCTGACAGGTTCCAGGACAGAAAGGTGTCTCCAGGAGGCAGAGACCAGCATCCAACCCACCAGAAGCTCCTGCCCCATCAAGGGCTTTC---CGACACGGAACTGCATGAGCACGGCCCTGGGC-CTGGGCAGGCCTGGCAGGTGAATGCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGGGCCGGAAGGAGAGACAGCAGGTGCCGCCGGTGCCTGAGTCACCAC i macNem1.NW_012014244v1 I 24 C 0 s cerAty1.NW_012001373v1 2919151 490 - 3785965 gggtggggcctgctccctccagcagctccagggaacgctcctttctgcctcttccagcttctgtggctccaggcagccctcggctggtggccacatcgcttca--gtccctctc--catcct-agttgg--ctgtctcctc--cat--gtgttgccccatctccctctccttgtacgaacactca-----tcgctggactg--ggcccgcccggaaaatccagg----------atgatc---tGAGATTGTCCTGACAGGTTCCAGGACAGAAAGGTGTCTCCAGGAGGCAGAGACCAGCATCCAACCCACCAGAAGCTCCTGCCCCACCAAGGGCTTTC---CAACACGGAACTGCTTGGGCACGGCCCTGGGC-CTGGGCAGGCCTGGCAGGTGAATGCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGGGCCGGAAGGAGAGGCAGCAGGTGCCGCCGGTGCCTGAGTCACCAC i cerAty1.NW_012001373v1 I 12 C 0 s chlSab2.chr2 89590734 483 - 90373283 aggcggggcctgctccctccagcagctccagggaatgctcctttctgcctcttccagcttctgtggctccaggcagccctcagcttgtggccacatcgcttca--gtccctctc--catcct-agttgg--ctgtctcctc----t--gtgtttcccaatctccctctccttgtaagaacactca-----tcgttggactcagggcccgcccggaaaatccagg----------atgatc---tGAGATTGTCCTGACAGGTTCCAGGACAGAAATGTGTCTCCAGGAGGCAGAGACCAGCAACCAACCCACCGGAAGCTCCTGCCCCGCCAAGG----------GACATGGAACTGCCTGGGCACGGCCCTGGGC-CTGGGCAGGCCTGGCAGGTGAATTCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGGGCCTAAAGGAGAGGCAGCAGGTGCCGCCAGTGCCTGAGTCACCAC i chlSab2.chr2 I 29 C 0 s manLeu1.NW_012104365v1 5466285 490 + 6149316 gggcggggcctgctccctccagcagctccagggaacgctcctttctgcctcttccagcttctgtggctccaggcagcccttggctggtggccacatcgcttca--gtccctctc--catgct-agttgg--ctgtctcctc--cat--gtgtttccccatctccctctccttgtaagaacactca-----tcgctggactc--ggcccgcccggaaaatccagg----------atgatc---tGAGATTGTCCTGACAGGTTCCAGGACAGAAAGGTGTCTCCAGGAGGCAGAGACCAGCATCCAACCCACCAGAAGCTCCTGCCCCACCAAGGGCTTTC---TGACACGGAACTGCTTGGGCACGGCCCTGGCC-GTGGGCAGGCCTGGCAGGTGAATGCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGGGCCGGAAGGAGAGGCAGCAGGTGCCACTGGTGCCTGAGTCACCAC i manLeu1.NW_012104365v1 I 45 C 0 s colAng1.NW_012114444v1 4699141 461 - 5823884 gggcggggcctgctccctccagcagctccagggaaggctcctttctgcctcttccagcttctatggctccaggcagcccttggcttgtgaccacatcgcttca--gtccctctcttcatcct-agttgg--ctgtctcctc--tgt--gtgtttcccagtctccctctccttgtaagaacactta-----tcgttggacttagggcccgcccggaaaatccagg----------atgatc---tGAGATCGTCCTGACAGGTTCCAGGGCAGAAACGTGTCTCCAGGAGGCAGAGACCAGCATCCAACCCTCTGGAAGCTCC----------AAGGCTTTC---CGACGCGGAACTGCTT------------------------GGCCTGGCAGGTGAATGCGTGGTCCACGTCTCCCGCTCAGCAGGCCCTTCTACA-ACCTACCTCGGCGCCCGGCACTCTGACAGCCGTGGGCTTTGCGCCTGAAGGAGAGGCAGCAGGTGCCGCCGGTGCCTGAGTCACCAC i colAng1.NW_012114444v1 I 362 C 0 s calJac3.chr5 57406008 482 + 159171411 gggcagggcctgctccctccaacggttccaggggagggtggtttctgcctctctcggcttc-atggctccaggcagcccttggcttccagctgaatcaccctg--ggctctccc--cttcct-ggttggcactgcctcctc----t--gtgttcccaaatctccctctccctataaggacactca-----tcatcggactcagggcccgctcggaaaatccagg----------atggtc---tGAGATTGTCCTGACAGGTTCCAGGACATGAGCATGTCTCCAGGAGGCGGAGATC----TCCAACCCACTGGAAGCCGCTGCCCTGCCCAGAGCTTTC---AGAC-TGGAACTGCGTAGGGGCAGCCCTGGGC-CTGGGCAGGCATGGCGGGTGCACACACTGTCCACCTCTCCTGCTCAGCAGGCCTTTCTACA-GCCAGACTCGGCGCCCAGTAGTCTGAGAGCCGTGGGCTATGGGCCTGAGGGAGAGGCAGCAGGTGCCACCAGCGCCTGAGTCA---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15527395 454 + 16356641 gggcagggcccgctccctccgacggTGCCAGGGGAGGGT-----------------GCTTC-GTGGCTGCAGGCAGCCCTTGGCTTCCGGCCGAATC-CCCTG--GGCTCCCCA--CTTCCT-GGTTGGCGCTGtctcctc----t--gtgtttctaaatctccccctccttgtaaggacactca-----tcatcggactcagggtccgcccggaaaatccagg----------atgatc---CGAGATTGTCCTGATGGGTTCCAGGGCACGAGCGTGTCTCTATGAGGCAGAGACCATCATCCAACCCACTGGAAGCCCCTGCCCCGCCGAGGGCTTTC---AGAC-CGGAACTGCGTAGGGGCAGCTCTGGGC-CCGGGCAGGCCTGGCGGGTGTACACCCTGTCCACGTCTCCTGCTCAGCAGGCCTGTCTGCA-ACCAACCTCGGCGCCTGGCAGTCTG--------------TGGGCCTGAGAGAGAAGCAGCAGGTGCCGCCAGCGCCAGAGTCA---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 373795 463 + 1231380 gggcagggcctgctccctccgacggtgcc--gggagggt-----------------gcttc-atggctacaggcagcccttggcttccggccgaatcaccctg--ggctctccc--cttcct-agttggtgctgtctcctc--------tgtttccgaatctccctgtccttgtaaggacactca-----tcatcggactcggggcccgcccggaaaatccagg----------atgatc---tGAGATTGTCCTGACAGGTTCCAGGGCACGAGTGTGTCTCCAGGAGACAGAGACCGTCATCCAATCCACTGGAAGCCCCTGCCCCGCCCAGGGCTTTC---AGGC-GGGAACTGCGTGCGGGCAGCCCTGGGC-CCCGGCACGCCTGGGGGGTGTGCGCACTGTCCACGTCTCCCGCTCAGCAGGCCCTTCTGCA-ACCGACCTCGGCGCCGGGCAGTCCGAGAGCCGTGGGCTGTGGGCCTGAGGGAGAGGCAGCAGGTGCTGTCACCACC--AGGCA---- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1935465 473 + 11732439 cagcagggcctgctccctctgccggttcctggggagggtgctttctgcctctcacggctt--gtggctccaggcagcccttggcttccagccaaatcacctcg--ggctctccc--cttcct-agttggcgccgtctcctc----t--gtgtttccaaatctccctctccttgtaaggacgctca-----tcatcggactcagggcccacccggagaatccagg----------atgagc---tgagattgtcttgaCAGGCTCCAGGGCACGAGCGTGTCTCTAGGAGGCAGAGACCATCATTCAAC----------------CCCAGCCCAGGGCTTTC---AGAC-CGGAACCGCGTGGGGGCAGCCCTGGGC-CTGGGCAGGCAGGGCAGGTGTACGCGCTGTCCACCTCTCCTGCTCAGCAGGCCTTTCTGCA-ACCAACCTCAGTGCCCGGCAGTCTGAGAGCCGTGGGCTATGGGCCTGAGGGGGAGACAGCAGGTGCCACCAGCACCTGAGTCACCAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22152752 446 + 22939663 --------------tcctccag-gtctccaaaggagcatcc-ccctaccttctccagc-tctgtggct-caggcatcccctggcttgtggccacattgttcca--gcctctgcc--tgtcctcacttgc--ctatctcctttgtgt--gtgtccccagatctccttctcctcacaaggacacttagatcctcattggatccaaggcccacTTAGAAAATCCC----------------CC---CAAGTTTATGATCA-GGGCTCCAGGACGTGAACAAGTCTTTGGGAG-CATGGGCCACCATCAGACCCTCCTG----------CCCACTGAGGGCTCCT---CAAAGACAGACTGCCTGGGGACATCCCTCAACACCAGGC---CCTGGCAAGGACCCTCACTGTCCACTTCTTCC---TAGTGAGCCC-TCTGTA-CACCAACCCTGTGCCC----------CACCCAT--CCTTTCAGATTATAGGAGACCCAGCAGGTGCGGCCAGCTAAGGTGACACCCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181099798 440 + 182113224 -tgctgcactgaactccttcacaaactctaggagaggatccaccttgcc----------------actccaggtgg-ctttggcttatggctgtgtcactaca--gtctttgacTGTGACTT-CATTTA--TCTTCTTCCC--TGTTGATTTCTCCAAAGTTCTCTCTTCTTAAATGGAGA-TGA-----TGAATGGATCA--AATCCACTCAGAAAATCCAGGTGTAGAATGAATGGTCACTGGAGGTCACATTAGCAGGTTAGGAAGTGCCCACATATGTTTAGGAA-CAGGGCCTACCATCC-----------------TGTCCTTCCAAAGGCTCTTTGGAGACAGGAATTTGCTTGGG----GCTCTATCC-TTATTC-----------------------TCCACTTCTG-TGAAAAGCAAGCCCTTCTTTATACCCATCACTGGTCCAAACACCGTG--AGTCACAAATTCTGTAACTGAAAGA---CCAGCAGGTACTACT-GTGAACATGCCACCAC i mm10.chr2 C 0 C 0 e dasNov3.JH567899 92928 324 + 555560 I e canFam3.chr24 47074498 2313 + 47698779 I a score=157090.000000 s hg38.chr20_KI270871v1_alt 13310 27 + 58661 CAGGCA--CTCGAGAGGACGACGGGCTGG s panTro5.chr20 65583153 27 + 66533130 CAGGCA--CTCGAGAGGACGACGGGCTGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352360 27 + 62195757 CAGGCA--CTCGAGAGGACGACGGGCTGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762914 27 - 1017659 CAGGCA--CTCGAGAGGACGACGGGCTGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253666 27 - 110113093 CAGGCA--CTCGGGAGGACGACGGGCTGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973275 27 - 92844088 CAGGCC--CTCGGGAGGATGCAGGGCCGG i rheMac8.chr10 C 0 I 2 s macFas5.chr10 95620812 27 + 96509753 CAGGCC--CTCGGGAGGATGCAGGGCCGG i macFas5.chr10 C 0 I 2 s macNem1.NW_012014244v1 16076268 27 - 16982598 CAGGCC--CTCGGGCGGATGCAGGGCCGG i macNem1.NW_012014244v1 C 0 I 2 s cerAty1.NW_012001373v1 2919641 27 - 3785965 CAGGCA--CTCGGGAGGATGCAGGGCCGG i cerAty1.NW_012001373v1 C 0 I 2 s chlSab2.chr2 89591217 27 - 90373283 CAGGCA--CTCGGGAGGATGCAGGGCCGG i chlSab2.chr2 C 0 I 2 s manLeu1.NW_012104365v1 5466775 27 + 6149316 CAGGCA--CTCGGGAGGATGCAGGGCCGG i manLeu1.NW_012104365v1 C 0 I 2 s colAng1.NW_012114444v1 4699602 27 - 5823884 CAGGCA--CTCGGGGGGACACGGGGCCGG i colAng1.NW_012114444v1 C 0 I 75 s calJac3.chr5 57406490 27 + 159171411 --GGAACTCTGGGGAGGACGCGGGGCTGG i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15527849 9 + 16356641 -----------------CCACTGGGC--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374258 21 + 1231380 --------CTCGGGAGGATGCGGGGCTGG i cebCap1.NW_016107870v1 C 0 I 2 s aotNan1.NW_018500483v1 1935938 29 + 11732439 CAGGCGCTCTGGGGAGGACGTGGGGCTGG i aotNan1.NW_018500483v1 C 0 I 2 s otoGar3.GL873542 22153198 19 + 22939663 AAGA----CTGAGGAGGGTATAG------ i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181100238 24 + 182113224 CCAACA--CT---GGAAATGCACTGCTGG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 93252 25 + 555560 CAGGTG--TGCAGGAGAAC--CAGGCTGC i dasNov3.JH567899 I 324 C 0 e canFam3.chr24 47074498 2313 + 47698779 I a score=-7370.000000 s hg38.chr20_KI270871v1_alt 13337 5 + 58661 GACAC s panTro5.chr20 65583180 5 + 66533130 GACAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352387 5 + 62195757 GACAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762941 5 - 1017659 GACAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253693 5 - 110113093 GACAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973304 3 - 92844088 GTC-- i rheMac8.chr10 I 2 I 18 s macFas5.chr10 95620841 3 + 96509753 GTC-- i macFas5.chr10 I 2 I 18 s macNem1.NW_012014244v1 16076297 3 - 16982598 GTC-- i macNem1.NW_012014244v1 I 2 I 18 s cerAty1.NW_012001373v1 2919670 3 - 3785965 GTC-- i cerAty1.NW_012001373v1 I 2 I 18 s chlSab2.chr2 89591246 3 - 90373283 GTC-- i chlSab2.chr2 I 2 I 54 s manLeu1.NW_012104365v1 5466804 3 + 6149316 GTC-- i manLeu1.NW_012104365v1 I 2 I 18 s calJac3.chr5 57406519 3 + 159171411 GAC-- i calJac3.chr5 I 2 I 2 s cebCap1.NW_016107870v1 374281 3 + 1231380 GAC-- i cebCap1.NW_016107870v1 I 2 C 0 s aotNan1.NW_018500483v1 1935969 3 + 11732439 GAC-- i aotNan1.NW_018500483v1 I 2 I 2 s otoGar3.GL873542 22153219 3 + 22939663 GAC-- i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181100262 3 + 182113224 GAC-- i mm10.chr2 C 0 I 2 s dasNov3.JH567899 93277 1 + 555560 G---- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074498 2313 + 47698779 I e saiBol1.JH378156 15527858 0 + 16356641 C e colAng1.NW_012114444v1 4699629 75 - 5823884 I a score=41314.000000 s hg38.chr20_KI270871v1_alt 13342 49 + 58661 TTTGTCGTACGACCCAC----GCGCCTG-------GGCCCCATTAGGAGCCATGCA-GAGC s panTro5.chr20 65583185 49 + 66533130 TTTGTCGTACGACCCAC----GCGCCTG-------GGTCCCATTAGGAGCCATGCA-GAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352392 49 + 62195757 TTTGTCGTACGACCCAT----GCGCCTG-------GGTCCCATTAGGAGCCATGCA-GAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762946 49 - 1017659 TTTGTCGTACGACCCAC----ACGACTG-------GGTCCCATTAGGAGCCATGCA-GAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253698 48 - 110113093 TTTGTTGTACGACCCAC----ACACCTG-------GGTCCCATTAGGAG-CATGCA-GAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973325 24 - 92844088 TGTGTCATACGACCCAC----ACACCTG--------------------------------- i rheMac8.chr10 I 18 C 0 s macFas5.chr10 95620862 24 + 96509753 CGTGTCATACGACCCAC----ACACCTG--------------------------------- i macFas5.chr10 I 18 C 0 s macNem1.NW_012014244v1 16076318 24 - 16982598 CGTGTCATACGACCCAC----ACACCTG--------------------------------- i macNem1.NW_012014244v1 I 18 C 0 s cerAty1.NW_012001373v1 2919691 24 - 3785965 CGTGTCATACGACCCAC----ACACCTG--------------------------------- i cerAty1.NW_012001373v1 I 18 C 0 s manLeu1.NW_012104365v1 5466825 31 + 6149316 TGTGTCATACGACCCAC----ACACCTGGGTCCCA-------------------------- i manLeu1.NW_012104365v1 I 18 C 0 s calJac3.chr5 57406524 49 + 159171411 TGTGTCCTAAGATCCAC----ATACCCA-------GGTCCCAGTAGGAGCCGTGCA-GAGC i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15527858 30 + 16356641 -----------------------ACTCA-------GGTCCCAGCAGGAGCCATGCC-GAGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374284 36 + 1231380 -------------CCAC----ATACCCG-------GGTCCCAGTAAGAGCCACGCA-GAGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1935974 49 + 11732439 TGTGTAGTAAGACCCAC----ATACCCG-------GGTCCCAGGAGGAGCCGTGCA-GAGC i aotNan1.NW_018500483v1 I 2 C 0 s otoGar3.GL873542 22153222 26 + 22939663 TTCTCCCTGGG-----C----ACACTCG-------AGGTCCA------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100267 33 + 182113224 -------TACTTCCCACC--TAAGCTTG-------------------AGTCATGAATGAGT i mm10.chr2 I 2 I 9 s dasNov3.JH567899 93278 43 + 555560 TGTGCCTCACAACCAACCCTCCCACCTG-------GGGCCTCGCCCGAGC----------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074498 2313 + 47698779 I e colAng1.NW_012114444v1 4699629 75 - 5823884 I e chlSab2.chr2 89591249 54 - 90373283 I a score=15226.000000 s hg38.chr20_KI270871v1_alt 13391 4 + 58661 CCCC s panTro5.chr20 65583234 4 + 66533130 CCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352441 4 + 62195757 CCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762995 4 - 1017659 CCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253746 4 - 110113093 CCCC i nomLeu3.chr13 C 0 C 0 s chlSab2.chr2 89591303 4 - 90373283 CCTG i chlSab2.chr2 I 54 C 0 s colAng1.NW_012114444v1 4699704 4 - 5823884 CCTG i colAng1.NW_012114444v1 I 75 C 0 s calJac3.chr5 57406573 4 + 159171411 CCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15527888 4 + 16356641 CCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374320 4 + 1231380 CCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936023 4 + 11732439 CCCC i aotNan1.NW_018500483v1 C 0 I 67 s mm10.chr2 181100309 3 + 182113224 CCT- i mm10.chr2 I 9 C 0 s dasNov3.JH567899 93321 4 + 555560 CCCT i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074498 2313 + 47698779 I e otoGar3.GL873542 22153248 0 + 22939663 C e manLeu1.NW_012104365v1 5466856 0 + 6149316 C e cerAty1.NW_012001373v1 2919715 0 - 3785965 C e macNem1.NW_012014244v1 16076342 0 - 16982598 C e macFas5.chr10 95620886 0 + 96509753 C e rheMac8.chr10 91973349 0 - 92844088 C a score=367605.000000 s hg38.chr20_KI270871v1_alt 13395 50 + 58661 GGCCCCATATCAACCTTC-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCGAACCAG s panTro5.chr20 65583238 50 + 66533130 GGCCCCATATCAACCTTC-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCGAACCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352445 50 + 62195757 GGCCCCATATCAACCTTC-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCGAACCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 762999 50 - 1017659 AGCCCCATATCAACCTTC-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAAACCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253750 50 - 110113093 CGGCCCATATCAACCTTC-GCCCCTCCCT---------------CTC--TGCCCATCCC-CCGAACCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973349 50 - 92844088 GGTCCCACGTCAACCTTT-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620886 50 + 96509753 GGTCCCACGTCAACCTTT-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076342 50 - 16982598 GGTCCCACGTCAACCTTT-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919715 50 - 3785965 GGTCCCACGTCAACCTTT-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591307 50 - 90373283 GGTCCCACATCAACCTTT-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466856 43 + 6149316 -------CGTCAACCTTT-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699708 50 - 5823884 GGTCCCATGTCAACCTTC-GCCCCTCCCT---------------CTC--TGCCCGTCCC-CCAGACCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406577 65 + 159171411 AGCCCATAGTTAACCTTC-ACCCCTCACTTTCCCGCCCCTCCTTCTC--TGCCCACCCC-AAAAACCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15527892 63 + 16356641 AGCCCTGGGTCAACCTTC-ACCCCTCACCCTCCCGCCCCTC---CTC--TGCCCACCCCAAAAAACCAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374324 62 + 1231380 AGCCCCAGGTCAACCTTC-ACCCCTCACCCTCCCACCCCTC---CTC--TGCCCACCCC-AAAAACCAC i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22153248 39 + 22939663 -----CACCTCAGCCTCCTGCCCCTTCCT---------------C-A--TGTCCATCCA-CTG------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100312 52 + 182113224 GATCAAAGTTCACTCCTT-ACCCCACCCA---------------CCTCGTGCCCATCCC-CTTAACCAG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 93325 35 + 555560 ------------GCCCCC-ACCCCGTCCT---------------CTG--CGCC---GCC-CCCGGCCAC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1936027 67 + 11732439 I e canFam3.chr24 47074498 2313 + 47698779 I a score=813332.000000 s hg38.chr20_KI270871v1_alt 13445 75 + 58661 CTGCCCCTCTGGGGGTGGGAGCCCAGACCAGGTCAGCAGACGCGAAAAGAGAAAGCACCACCATCACCAAGTCCA s panTro5.chr20 65583288 75 + 66533130 CTGCCCCTCTGGGGGTGGGAGCCCAGACCAGGTCAGCAGACGCGAAAAGAGAAAGCACCATCATCACCAAGTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352495 75 + 62195757 CTGCCCCTCTGGGGGTGGGAGCCCAGACCAGGTCAGCAGACGCGAAAAGAGAAAGCACCATCATCACCAAGTCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763049 75 - 1017659 CTGCCCCTCTGGGGGTGGGAGCCCAGACCAGGTCAGCAGACGCGAAAAGAGAAAGCACCACCATCACCAAGTCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253800 75 - 110113093 CTGCCCCTCTGGGGATGGGAGCCCAGACCAGCTCAGCAGACGTGGAAAGAGAAAGCACCACCATCACCAAGTCCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973399 75 - 92844088 CTGCCCGTCTGGGGATGGGAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCATCACCAAGTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95620936 75 + 96509753 CTGCCCGTCTGGGGATGGGAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCATCACCAAGTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076392 75 - 16982598 CAGCCCGTCTGGGGATGGGAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCATCACCAAGTCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919765 75 - 3785965 CTGCCCGCCTGGGGATGGGAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCATCACCAAGTCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591357 75 - 90373283 CTGCCCCTCTGGGGATGGGAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCCTCACCAAGTCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466899 75 + 6149316 CTGCCCGCCTGGGGATGGGAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCATCACCAAGTCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699758 75 - 5823884 CTGCCCCTCTGGGGATGGCAGTCCAGACCAGGTCAGCAGACACGGAAAGAGAAAGCACCACCCTCAGCAAGTCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406642 75 + 159171411 CTGCCCCTCTGGGGACTGGAGCCCAGACCAGGTCGGCAGATGCGGAAAGAGAAAGCACCACCATCACCAAGTCCA i calJac3.chr5 C 0 I 10 s saiBol1.JH378156 15527955 74 + 16356641 CTGCCCCTCTGGGGACGGGAGCCCAGACCAGGTC-GCAGATGTGGAAAGAGAAAGAACCACTGTAGCCAAGccca i saiBol1.JH378156 C 0 I 12 s cebCap1.NW_016107870v1 374386 75 + 1231380 CTGCCCCTCTGGGGACGGGAGCCCAGACCAGGTCGGCAGATTCGGAAAGAGAAAGCACCACCATCGCCAAGTCCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936094 75 + 11732439 CTGCCTCTCTGGGGATGGAAGCCCAGACCAGGTCGGCAGATGCCGAAAGACAAAGCATTACCATCGCCAAGTCCA i aotNan1.NW_018500483v1 I 67 I 167 s otoGar3.GL873542 22153287 70 + 22939663 TGGCCCCTTGGGGGATG-----CCTGGACAGTGTAACATAAGTGGCAGGAGAAAGTGCCACCATCACCAAGCCCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100364 62 + 182113224 CTACTCTTCTAGAGATAGGATCCTTAATCCAGCCAGCAGAATCTA-----------ACTA--GTCTTTAAGACTA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 93360 71 + 555560 AGGCCCCGCTGAGGCCAGGAGCCAAGACCAGCTCAGCAGA---GGGGCCGGCAAGCGCCACCCTCACCAGACCA- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47074498 2313 + 47698779 I a score=11504.000000 s hg38.chr20_KI270871v1_alt 13520 1 + 58661 G s panTro5.chr20 65583363 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352570 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763124 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253875 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973474 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621011 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076467 1 - 16982598 G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919840 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591432 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466974 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699833 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406727 1 + 159171411 G i calJac3.chr5 I 10 C 0 s saiBol1.JH378156 15528041 1 + 16356641 g i saiBol1.JH378156 I 12 C 0 s otoGar3.GL873542 22153357 1 + 22939663 A i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100426 1 + 182113224 G i mm10.chr2 C 0 C 0 s dasNov3.JH567899 93431 1 + 555560 G i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1936169 167 + 11732439 I e cebCap1.NW_016107870v1 374461 0 + 1231380 C e canFam3.chr24 47074498 2313 + 47698779 I a score=388279.000000 s hg38.chr20_KI270871v1_alt 13521 53 + 58661 CGTCCCCGCGCGTCCC---AGC---T-CCCTGG------AGTCCCTGGGGC--ACTGTCCT-GGCGTGT s panTro5.chr20 65583364 53 + 66533130 CGTCCCCGTGCGTCCC---AGC---T-CCCTGG------AGTCCCTGGGGC--ACTGTCCT-GGCGTGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352571 53 + 62195757 CGTCCCCGCGCGTCCC---AGC---T-CCCTGG------AGTCCCTGGGGC--ACTGTCCT-GGCGTGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763125 53 - 1017659 CGTCCCCGCGCGTCCC---AGC---T-CCCTGG------AGTCCCTGGGGC--ACTGTCCT-GGCGTGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253876 55 - 110113093 CATCCCCGCGCGTCCC---AGC---TCCCCTGG------AGTCCCTGGGGC--ACTGTCCTGGGCGAGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973475 54 - 92844088 CGTCCCTGTGCATCCC---AGC---T-CCCTGG------AGGCCCCAGGGC--ACTGTCCAGGGCGAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621012 54 + 96509753 CGTCCCTGTGCATCCC---AGC---T-CCCTGG------AGGCCCCAGGGC--ACTGTCCGGGGCGAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076468 54 - 16982598 CGTCCCTGTGCATCCC---AGC---T-CCCTGG------AGGCCCCGGGGC--ACTGTCCGGGGCGAGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919841 54 - 3785965 CGTCCCTGTGCATCCC---AGC---T-CCCTGG------AGTCCCCGGGGC--ACTGTCCGGGGCGAGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591433 54 - 90373283 CGTCCCTGCGTGTCCC---AGC---T-CCCTGG------AGTCCCCGGGGC--ACTGTCTGGGGCGAGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5466975 54 + 6149316 CGTCCCTGTGCATCCC---AGC---T-CCCTGG------AGTCCCCGGGGC--ACTGTCCGGGGCAAGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699834 54 - 5823884 CGTCCCTGCACGTCCC---AGC---T-CCCTGG------AGTCCCTGGGGC--ACTGTCCGGGGCGAGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406728 55 + 159171411 CATCCCAGTGCGTCCC---AGC---T-CCCTGG------AGTCCCCCGGGC-TGCTGTCCGGGGTGAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528042 58 + 16356641 cgtcccagcgcgtccc---agcgcgt-cccTGG------AGTCTCCCGGGC-CGCTGTCCGGGGTGAGT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374461 36 + 1231380 -------TTGCGTCCC---AAC---T-CCCTGG------AGTCCCCCGGGC-CGC------------GT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936336 53 + 11732439 cgtcccagcgtgtccc---aGC---T-CCCTGG------AGTCCCCTGGGC-CGCTGTCCAGAGC--GT i aotNan1.NW_018500483v1 I 167 C 0 s otoGar3.GL873542 22153358 42 + 22939663 --------TGGGAAGC---ACA---T-CCCAGG------GGCTCCCTGTGC------TCCCAACCCCGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100427 39 + 182113224 ----------TAGCCA---AGC---T-T-------------GCCCCAGGGCTTTTTGTCACTGGCCAAA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 93432 59 + 555560 TGGCCAAGCACGTGCCAGGAGC---C-CCCTGGAGACCCAGACCCTGAGGC------TGCCTGGCGCGT i dasNov3.JH567899 C 0 I 452 e canFam3.chr24 47074498 2313 + 47698779 I a score=374364.000000 s hg38.chr20_KI270871v1_alt 13574 43 + 58661 CTTCTGTGGGCAGCTGGGGCCCCCA-GGAGGACTGAGACGCCCA--------------- s panTro5.chr20 65583417 43 + 66533130 CTTCTGTGGGCAGCTGGGGCCCCCA-GGAGGACTGAGACGCCCA--------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352624 43 + 62195757 CTTCTGTGGGCAGCTGGGGCCCCCA-GGAGGACTGAGACGCCCA--------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763178 43 - 1017659 CTTCTGTGGGCAGCTGGGGCCCCCA-GGAGGACTGAGACGCCCA--------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253931 43 - 110113093 CTTCTGTGGGCAGCTGGGTCCCCCG-GGAGGACTGAGGCACCCA--------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973529 42 - 92844088 CTTCTGTGGGCAGCCGGGGCCCCCA--GAGGACTGAAACGCCCA--------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621066 42 + 96509753 CTTCTGTGGGCAGCCGGGGCCCCCA--GAGGACTGAAACGCCCA--------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076522 42 - 16982598 CTTCTGTGGGCAGCCGGGGCCCCCA--GAGGACTGAAATGCCCA--------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919895 42 - 3785965 CTTCTGTGGGCAGCCGGGGCCCCCA--GAGGACTGAAACGCCCA--------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591487 42 - 90373283 CTTCTGTGGGCAGCTGGGGCCCCCA--GAGGACTGAGACGCCCA--------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5467029 42 + 6149316 CTTCTGTGGGCAGCCGGGGCCCCCA--GAGGACTGAAACGCCCA--------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699888 42 - 5823884 CTTCTGTGGGCAGCCAGGACCCCCA--GAGGACTGAGACGCCCA--------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406783 44 + 159171411 CTTCCATGAGCAGCTGGGGCCCCTCAGGAAGACTGAGACGCCCA--------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528100 44 + 16356641 CTTCCGTGAGCAGCTGGGGCCCCTCAGGAGGACTGAGACGCCCA--------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374497 41 + 1231380 CTTCCGTGAGCAGCTGGGGCCCCTC---AAGACTGAGATGCCCA--------------- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936389 44 + 11732439 CTTCTGTGAGCAGCTGGGGCCCCTCAGGAGGACTGAGACGCCCA--------------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22153400 30 + 22939663 CT-------GGGGCTGAGTCACTGC-------CTGGGATGCCTG--------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100466 49 + 182113224 GTTCTA---------GAGCCTCTCA-GGAGACCCAAGCTGCCCAGTCTCCCTCAGTGTT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 93491 452 + 555560 I e canFam3.chr24 47074498 2313 + 47698779 I a score=277446.000000 s hg38.chr20_KI270871v1_alt 13617 29 + 58661 CCCGCCCCA-CCT-----GGAGCTCCC-CAGCTGAC s panTro5.chr20 65583460 29 + 66533130 CCCGCCCCA-CCT-----GGAGCTCCC-CAGCTGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352667 29 + 62195757 CCCGCCCCA-CCT-----GGAGCTCCC-CAGCTGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763221 29 - 1017659 CCCGCCCTA-CCT-----GGAGCTCCC-CAGCTGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109253974 29 - 110113093 CCCGCCCCT-CCT-----GGAGCTCCC-CGGCTGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973571 29 - 92844088 CCCGCCCCA-CCG-----GGAGCTCCC-TGGCTGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621108 29 + 96509753 CCCGCCCCA-CCG-----GGAGCTCCC-TGGCTGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076564 29 - 16982598 CCCGCCCCA-CCG-----GGAGCTCCC-TGGCTGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919937 29 - 3785965 CCCACCCCA-CCG-----GGAGCTCCC-TGGCTGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591529 29 - 90373283 CCCGCCCCA-CCG-----GGAGCTCCC-TGGCTGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5467071 29 + 6149316 CCCGCCCCA-CCG-----GGAGCTCCC-TGGCTGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699930 29 - 5823884 CCCGCCCCA-CCT-----GGAGCTCCC-TGGCTGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406827 28 + 159171411 CCCGCCCCA--TT-----GGAGCTCTC-CGGCTGAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528144 28 + 16356641 CCCACCCGC--TT-----GGAGCTTCC-CGGCTGAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374538 28 + 1231380 CCCGTCCCA--CT-----GGAGCTCCC-CGGCTGAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936433 28 + 11732439 CCTGCCCCA--TT-----GGAGCTCCC-CGGCTGAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22153430 27 + 22939663 CCCAGCC----AC-----AAAGCCCCTGCTGCTGAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181100515 34 + 182113224 CCAGCCTTA-GCTTGGGAGGAGACCCT-GTGCTGAC i mm10.chr2 C 0 C 0 s dasNov3.JH567899 93943 30 + 555560 CCCACCCTGGCCT-----GGGCCCCCC-ATGCCGAC i dasNov3.JH567899 I 452 C 0 e canFam3.chr24 47074498 2313 + 47698779 I a score=4278417.000000 s hg38.chr20_KI270871v1_alt 13646 483 + 58661 CTGAAAGCGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATAAGTCTGG--GGCAAGAGAAGGAGAGGGG-AGTGAGCGTCTCACCCTCCCGAGTCCT-----GGGACACCTCCCTCTGCTTGCA-CAGCTC-CATGGGCA-----GGCGCCTGCAGTGTCAGACACC-CGGCGGCATGTGACGTGGCCAGGCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTCAG---G---CCCACCTCTCTTGGGCAGGC--CTGGGAGCCATCTT-------------CATTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----GGAGGAGGGAAGAGGGCG-------CCTGGCCACCCATGCAGCCCCGACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTAGGGGGAGGCGCTACT---------CC---CCCTTCTAAT------------CCCTGAACATCCTAGAGGG------AC----AGCA---CGCGAATATATTTAGGGCCCCGGCCCCT-------CTCTAC s panTro5.chr20 65583489 476 + 66533130 CTGAAAGCGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATAAGTCTGG--GGCAAGAGAAGGAGAGGGG-AGTGAGCGTCTCACCCTCCCGAGTCCT-----GGGACACCTCCCTCTGCTTGCG-CAGCTC-CATGGGCA-----GGCGCCTGCAGTGTCAGACACC-CGGCGGCGTGTGACGTGGCCAGGCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTCAG---G---CCCACCTCTCTTGGGCAGGC--CTGGGAGCCATCTT-------------CGTTCTC-TGGCTGTGTCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----GGAG-------GAGGGCG-------CCTGGCCACCCATGCAGCCCCGACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTAGGGGGAGGCGCTACT---------CC---CCCTTCTAAT------------CCCTGAACATCCCAGAGGG------AC----AGCA---CGTGAATATATTTAGGGCCCCGGCCCCT-------CTCTAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61352696 476 + 62195757 CTGAAAGCGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATAAGTCTGG--GGCAAGAGAAGGAGAGGGG-AGTGAGCGTCTCACCCTCCCGAGTCCT-----GGGACACCTCCCTCTGCTTGCG-CAGCTC-CATGGGCA-----GGCGCCTGCAGTGTCAGACACC-CGGCGGCGTGTGACGTGGCCAGGCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTCAG---G---CCCACCTCTCTTGGGCAGGC--CTGGGAGCCATCTT-------------CGTTCTC-TGGCTGTGTCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----GGAG-------GAGGGCG-------CCTGGCCACCCATGCAGCCCCGACCCTGCAGCCTGCAGCAGGTGGAGGAGGGCGCGCAGGTAGGGGGAGGCGCTACT---------CC---CCCTTCTAAT------------CCCTGAACATCCCAGAGGG------AC----AGCA---CGTGAATATATTTAGGGCCCCGGCCCCT-------CTCTAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763250 481 - 1017659 CTGAAAGCGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATAAGTCTGG--GGCAAGAGAAGGAGAGGGG-AGTGAGCGTCTCACCCTCCCGAGTCCT-----GGGACACCTCCCTCTGCTTGCA-CAGCTC-CATGGGCA-----GGTGCCTGCAGTGTCAGACACC-CGGCGGCGTGTGACGTGGCCAGCCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTTAG---G---CCCACCTCTCTTGGGCAGGC--CTGGGAGCCATCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAAACAGC-------------AAGGACAACAG-----GGAGGAGGGAGGAGGGCA-------CCTGGCCACCCATGCAGCCCCGACCCTGCAGCCTGGAGCAGGTGGAGGAGGGC-CGCAGGTAGGGGGAGGCGCTACT----------C---CCCTTCTAAT------------CCCTGAACATCCCAGAGGG------AC----AGCA---CGCAAATATATTTAGGGCCCCGGCCCCT-------CTCTAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109254003 467 - 110113093 CTGAAAGCGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATGAGCCTGG--GGCAAGAGAAGGAGAGCAG-GGTGAGCGTCTGATCCTCCCGAGTCCT-----GGGACACCTCCCTCTGCTTGCA-CAGCTC-CACAGGCA-----GGCGCCTGCAGTGTCAGACACC-CGGCGGCATGTGACGTGGCCAGGCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTCAG---G---CCCACCTCTCTTGGGCAGGC--CCGGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGCACAGCAG-----GGAGGAGGGAGGAGGGCA-----------------------------GCCCTGCAGCCTGGAGCAGGTGGAGGAGGGCATGCAGGTACGGGGAGGTGCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAGGG------AC----ATCA---CCCAAATATACTTAGGGCCCCGGCCCCT-------CTCTAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91973600 484 - 92844088 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGATTCAACGGGGGGATGAGTCTGG--GGGA----GAGGAGAGGGG-AGTGAGCGTCTCACCCGCCCGAGTCCT-----GGGACACCTCCCTCAGCTTGCA-CAGCTC-CACCGGCC-----GACGCCTGCGGTGCCAGACACC-CGGCAGCGTGTGATGTGGTCAGGCTTTCAGGCAGCTGCCCACTGGG--TCCTGGGCTCAG---G---CCCACCTCTCCTGGGCAGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----AGAGGACGGAGGAGGGAA--------CAGGCCACCCATGCAGCCCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAAGG------AC----AGCA---CCTGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621137 484 + 96509753 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGATTCAACGGGGGGATGAGTCTGG--GGGA----GAGGAGAGGGG-AGTGAGCGTCTCACCCGCCCGAGTCCT-----GGGACACCTCCCTCAGCTTGCA-CAGCTC-CACCGGCC-----GACGCCTGCGGTGCCAGACACC-CGGCAGCGTGTGATGTGGTCAGGCTTTCAGGCAGCTGCCCACTGGG--TCCTGGGCTCAG---G---CCCACCTCTCCTGGGCAGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----AGAGGAGGGAGGAGGGAA--------CAGGCCACCCATGCAGCCCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAAGG------AC----AGCA---CCTGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16076593 484 - 16982598 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGATTCAACGGGGGGATGAGTCTGG--GGGA----GAGGAGAGGGG-AGTGAGCGTCTCACCTGCCCGAGTCCT-----GGGACACCTCCCTCAGCTTGCA-CAGCTC-CACCGGCC-----GACGCCTGTGGTGCCAGACACC-CGGCAGCGTGTGACGTGGTCAGGCTTTCAGGCAGCTGCCCACTGGG--TCCTGGGCTCAG---G---CCCACCTCTCCTGGGCAGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----AGAGGAGGGAGGAGGGAA--------CAGGCCACCCATGCAGCCCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAAGG------AC----AGCA---CCCGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2919966 485 - 3785965 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGATTCAACGGGGGGATGAGTCTGG--GGGA-GAGGAGGAGAGGGG-AGTGAGCGTCTCACCCGCCCGAGTCCT-----GGGACACCTCCCTCAGCTTGCA-CAGCTC-CACCGGCC-----GACGCCTGCGGTGCCAGACACC-CGGCAGCGTGTGATGTGGTTGGGCTTTCAGGCAGCTGCCCACTGGG--TCCTGGGCTCAG---G---CCCACCTCTCCTGGGCAGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGC-------AGAGGAGGGAGGAGGGAA--------CAGGCCACCCATGCAGCTCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAAGG------AC----AGCA---CCCGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89591558 485 - 90373283 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGATTCAACGGGGGGATGAGTCTGG--GGGA-GAGGAGGAGAGGGG-AGTGAGCGTCTCACCCACCCGAGTCCT-----GGGACACCTCCCTCAGCTTGCA-CAGTTC-CACCGGCC-----GAGGCCTGCGGTGTCAGACA---CGGCAGCGTGTGATGTGGTCAGGCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTCAG---G---CCCACCTCTCCTGGGCGGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----AGAGGAGGGAGGAGGGAA--------CAGGCCCCCCATGCAGCCCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGCGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAAGG------AC----AGCA---CCCGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5467100 487 + 6149316 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGATTCAACGGGGGGATGAGTCTGG--GGGA-GAGGAGGAGAGGGG-AGTGAGCGTCTCACCCGCCCGAGTCCT-----GGGACACCTCCCTCAGCTTGCA-CAGCTC-CACCGGCC-----GACGCCTGCGGTGTCAGACACC-CGGCAGCGTGTGATGTGGTCGGGCTTTCAGGCAGCTGCCCACTGGG--TCCTGGGCTCAG---G---CCCACCTCTCCTGGGCAGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----AGAGGAGGGAGGAGGGAA--------CAGGCCACCCATGCAGCCCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGTGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCC---CCCTTCTAAT------------CCCTGAACATCCCAGAAGG------AC----AGCA---CCCGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4699959 495 - 5823884 CTGAAAGCAAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAACGGGGGGATGAGTCTGG--GGGA-GAGGAGGAGAGGGG-AGTGAGCGTCTCACCCGCCCGAGGCCT-----GGGACACGTCCCTCAGCTTGCA-CAGCTC-CACCGGCA-----GACGCCTGCGGTGTCAGACACC-CGGCAGTGTGTGATGTGGTCAGGCTTTCAGGCAGCTGCCCACTGGG--CCCTGGGCTCAG---G---CCCACCTCTCCTGGGCAGTC--CCAGGAGCCACCTT-------------CGTTCTC-TGGCTGTGCCT----GGGGCCTTGT---------------CAACCAGC-------------AGGGACAGCAG-----AGAGGAGAGAGGAGGGAGGAGGGCACCTGGCCACCCATGCAGCCCCAACCCTGCAGCCTGGAGCAGGTGGAGGAGGGTGCGCAGGTCGGGGGAGGCCCTACTC---CCTGCCT---ACCTTCTAAT------------CCCTGAACATCCTAGAAGG------AC----AGCA---CCCGAATATATTTAGGGCCCCGGCCTCT-------CTCTAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57406855 460 + 159171411 CTGAAAGTGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATGAGTCTGG--AGCAAGAGGAGGAGAGGTG-GGTGA------------GCCGAGTCCT-----GGGACACCTCCCTCTGCTTCCA-CAGCT--CACAGGCC-----AG-GCCTACAGGGTCAGACACC-CAGGGGCGTGTGTGGCGGCTGGGC-TTCAGGCAGCCGCCC-CTTGG--ACCTGCGCTCAG---G---CCCAACTCTCCTGGGCAGGC--CCCAGAGCCACCTT-------------CGTGCTC-CAGCTGTGCCT----G--GCCCTGG---------------TGACCAGC-------------AGGCGCAGAAG-----GGAA-------GAGGGCG-------CCTGGCTGCCCGTGCAGCCCCGACCCTGTGGCGTGGAGCAGGTGGAGGAGGACACACAGGT-CGGGGAGGTCCTA-TC---CCTGCCC---CGCTTCTGAT------------CCCCAAATATCCCTGAAGG------AC----GGCA---CCCCAGTGTATTTGGGGCTCCAGCCC---------CTCTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528172 444 + 16356641 CTGAAAGTGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATGAGTCTGG--AGCAA---GAGGAGAGGGG-GGTGAGCGTCCGGC--CGCCGAGTCCT-----GGGACACCTCCCTCTGCTTGCA-CAGCT--CACAGGCG-----GG-GCCTGCGGGGTCAGACACC-CAGGGGC--GTGTGGCGGCCGGGC-TTCAGGCCGCCGCCC-CTGGG--ACCTGCGCTCAG---G---CCCACCTCTCTTGGGCAG----------------------------------GCTC-TGGCTGTGCCT----GGCGCCCTGG---------------TGACCAGC-------------GGGCGCAGAAG-----GGAG-------GAGGGCA-------CCTGGCTGCCTGTGCAGCCCTGACCCTGCGGCCTGGAGCAGGT---GGAGGACAGGCAGGT-CGGGGAGGCCCTA-TC---CCTGCCC---TGCTTCTGAC------------CCCCGAGCACCCCTGAAGG------AT----GGCA---CCCCAGCATATTT-GGACTCCAGCCC---------CTCTGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 374566 453 + 1231380 CTGAAAGTGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTTAGCGGGGGGATGAGTCTGG--AGCAAGAGGAGGAGAGGGG-AGTGAGCGTCCCGT--CGCTGAGTCCT-----GGGACACCTCCCTCTGCCTGCA-TGGCT--CACAGGCG-----GG-GCCTGCGGGGTCAGACACC-CAGGGGCGTGTGGGGCGGCCGGGC-TTCAGGCAGCCGCCC-CTGGG--ACCTGCGCTCAG---G---CCCACCTCTCCTCGGCAGGC--TCCGGCGCCACCCT-------------CCTGCTC-CAGCTGTGCCT----GGGGCCCTGG---------------TGACCAGC-------------AGGCGCAGAAG-----GGAG-------GAGGGCG--------CTGGCCGCCCGTGCCACCCCGACCCTGAGGCCAGGAGCAGGTGGAGGAGAACGCGCAGGT-GGGGACGGCCCTA-TC---CCTGCCC---CTCTTCTGAT------------CCCCGAACACCCCTGAAGG------AC-------------------------GCACCCCAGCCC---------CTTTGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936461 434 + 11732439 CTGAAAGTGAGTCCAGATTTACTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTCAGCGGGGGGATGAGTCTGG--AGCAAGAGGAGGAGAGGTG-AGTGAGCGTCCCAC-TCGCTGAGTCCC-----AGGACACCTCCCTCTGCCTGCG-CAGCT--CACAGGCA-----GG-GCAT-------------------------GTGTGGCGGCCAGGC-TTCAGGCCGCCGCCC-CTGGG--ACCTGCGCTCAG---G---CCCACCTCTCCTGGGCAGGC--CCCGGAGCCACCTT-------------CGTGCTC-CGGCTGTGCCT----GGGGCCCTGG---------------TGACCAGC-------------AGGCACAGAAG-----GGAG-------GAGGGCG-------CCTGGCCGCCCGTGCAGCCCCGACCCTGCGGCCTGGAGCAGGT---------------GGT-GGGGGAGGCCCTA-TC---CCTGCCC---CGCTTCTGAT------------CCCTGAATACCCATGAAGG------AC----GGCA---CCCCAGCGTATTTGGGGTTCCGGCCC---------CTCTGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22153457 426 + 22939663 CTGAAGGTGAGTCCAGACTTGCTCTTGAGGTTCCTCAGCAGCTCCAGCTGGTTGAGAGGGGGGATCAGTCTGGGTGGGAGAAGGATGAGGAGTG-AGCCAGGAGCAGACCCCACC----------------CACTCCCACCAGCGTCCT-CAGCACACGCAGGCA-----GG-GCATA--------------------------GGTGTGATCAGGC-TCTGGACAATACCCACCTGTG--CCCAGGCTCCAT---G---TCCACCTTCTCTCCCCAGCC--CTGAGAGCC----T-------------CAGGCTC-TGGATGTG---------GGCCAT------------------AACCAGC-------------AGGGCTGGCAG-----AGGGG------AATAGAG-------CCCGG-----TGGAGAACCTGGCCCTTGCAGTGTGG-GCAGGTGAGGAAGGGCAC-----TGCTGGGCCACCCTCCTCCTTCCCTCCC---CCTTCCCTAC------------CCCTGAACATTCCC--AGG------GC----AGCACAGCTAGGACACA---GGGGCCCTGGCCCCT-------CTCTGC i otoGar3.GL873542 C 0 I 16 s mm10.chr2 181100549 478 + 182113224 CTGAAGGTGAGTCCAGATTTGCTCTTGAGATTCCTCAGCAGCTCCAGCTGGTTCAGAGGTGGGATGAGTCTGA--GGCAAGACAAGGAGAGGTG-AGTAAGC--CTAACCCCATC-AGAGCT-----GAGGCTCAGCTCTGTACACCCA-CATCTA-CTCC------------ATCCATGGGAGCAAACA--------GCAGATGCCAGAGCATGGGTGCAGAACACCTG------AAG--CTCTGGGCTCAG---TGCCTCCACCTCTCC----CAAAC--TCCAGGGCTGTCTTTATCCCCCCCAACCCTTCTC-ATGTTGTTCCT----GGGGCCTGG------------------GGCCTC-------------AGGCACAGGAA----------------ATGGACA-------GCAGG----CCATGAGGGCCCAGCCCTTCAGGATGGATCAAG---AGAGCAGAGTCCAGGTAGGGTG----CCTCTTC---CCAACCT---CTCTTCTGCTCTATTTCCCTGACCCTGAAAATTTCAAGGAGCTGCAAAC----AGCA---CCCCAACACATTCAAGGTCTCAGACCCTTGAGTCCCTTTGC i mm10.chr2 C 0 C 0 s canFam3.chr24 47076811 488 + 47698779 CTGAAGGTGAGCCCAGATTTACTCTTGAGGTTCCGCAGCCGCTCCAGCTGGTTGAGGGGTGGGATCAGTCTGC--GGC-----GAGAAGAGACGCAGTGAGCGCCT-GCCCGCCTGGGCCCG-----GGGACCCGCACCCCTGCTCCCACCAGCGT-CCGCGTCACACAGGGCGCCTGCGGCGGCAA--TGC-TGGGGGCACG-GGTGTGGCCTGTC--CCAGGCAGAGG---------------GAGGGGAG---A---GCTCCCTGGCAGCGGTGGCCCTCCGGGGACCGTCTG-------------TGCCCTCGGGGCTGTGCCTCTCGGGGGCCGTGCCCTGGACACAGGCAGCGACCAGCCCACCCCGTGGAGGGGCCCAGAAGGGTCCGGGGGACAGGTGGGGGCA---TGCCCGTGGCCCTCTCTGCAGACCACACGCTCCCCCTT--------------------CCCTAACACGGTG-TCCCCTGCGC---CCTCCCCCCGCCTCTCTAAC------------CCCTGAACACCCCCAAGGG------GCAAAGAGCA---CCCCAACATGTTTAAGGTCC--------------------- i canFam3.chr24 I 2313 C 0 s dasNov3.JH567899 93973 406 + 555560 CTGAAGGTGAGTCCAGATTTACTCTTGAGGTTCCTGAGCAGCTCCAGCTGGTTGAGGGGTGGGATCAGCCTGG--GGAA---GACGGGGGGCTG-GGTGGGCTTCCAACCAGCGTGAGCTCCCAGAAGGGACCCCTCCCTC-ACTGGCA-C------CCCTGTCC----------CCCCGGGAGTGGGCACCATGGCCACATGGAGAGAGGGGATGTCCACACACAGC--CCACCTGGGCTCCCTGGGGTCTGTGTG---CCCCCCTCCC----GGAGCC--CCGGGAA--ACCAA-------------CGCCCCC-T---------T-----------------------------CGGGCTGC-------------AG-------AG-----GGAG-------GGGGCCG------------------TGATGACCCCAGTCCTGCCTCGCTGAGCACGTG------------------GGGGGTGCTCCCGCTC---CCCGCGC---ACCCCTTAGGGCA---------GCGCCAGCAGCC----AGC------AC----GGCA---CCCCAACATACTGAGGGCCCCAGAC---------------- i dasNov3.JH567899 C 0 C 0 a score=1116065.000000 s hg38.chr20_KI270871v1_alt 14129 152 + 58661 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTCTGCTTGGCAAAGAGCAGCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGCCTCATCAGGCCCAGATGCCTTGGGAATCCTCCGCAGGTGGCCCA s panTro5.chr20 65583965 152 + 66533130 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTCTGCTTGGCAAAGAGCAGCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGCCTCATCAGGCCCAGATGCCTTGGGAACCCTCCGCAGGTGGCCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353172 152 + 62195757 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTCTGCTTGGCAAAGAGCAGCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGCCTCATCAGGCCCAGATGCCTTGGGAACCCTCCGCAGGTGGCCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763731 152 - 1017659 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTCTGCTTGGCAAAGAGCAGCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGCCTCATCAGGCCCAGATGCCTTGGGAACCCTCCGCAGGTGGCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109254470 151 - 110113093 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGA-GTGGGGATACAGAAAAGGATTTTGCTTGGCAAAGAGCAGCTCATTCTGGGGTCTATAGCATG----------------AGC--CCAGCCTCATCAGGCCCAAATGCCTTGGGGACCCTCCGCAGATGGCCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91974084 129 - 92844088 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTTTGCTTGGCAAAGGGAACCTTATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATG-----------------------CCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621621 129 + 96509753 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTTTGCTTGGCAAAGGGAACCTTATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATG-----------------------CCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16077077 129 - 16982598 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTTTGCTTGGCAAAGGGAACCTTATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATG-----------------------CCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2920451 129 - 3785965 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGACACAGAAAAGGATTTTGCTTGGCAAAGGGAACCTTATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATG-----------------------CCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89592043 131 - 90373283 ACAGCCACTTTCTCTGCCAAGGCTGGAGGAGTTGGGAGGTGGGGATACATAAAAGGATTTTGCTTGGCAAAGCCAAGCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATGCC---------------------CCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5467587 129 + 6149316 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGACACAGAAAAGGATTTTGCTTGGCAAAGGGAACCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATG-----------------------CCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4700454 129 - 5823884 ACAGCCACTTTCTCTGCCAAAGCTGGAGGAGTTGGGAGGTGGGGATACAGAAAAGGATTTTGCTTGGCAAAGGGAAGCTCATTCTGGAGTCTATAGGATG----------------AGC--CCAGGCTCATCAGGCCCAGATG-----------------------CCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57407315 145 + 159171411 ACAGCCACATTCTCTGCCACAGCTGGAAGACTTGA-----GGGGAAACAGAAAAGGGTTTTGCTGGACAGAGAG--GTTCATTCCGGAGTCTACAGGATG----------------AGT--CCAGCCTCATCAAGCCCAGACACCTCGGGGACCCTCCACAGGTGGCCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528616 140 + 16356641 ACAGCCACGTTCTCTGCCACAGCTGGAAGACTT-------GGGGGAACAG--AAGGGTTTTGCTGGACAGAGAG--GCTCATT-CGGAGTCTACAGGAGG----------------AGT--CCAGCCTCATCAGGCCCAGACGCCTCGGGGACCCTCCACATGTGGCCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375019 130 + 1231380 CCAGCCACATTCTCTGC-----CTGGAAGACTTGG-----GGGGAAGCAG--AAGGGTTTTGCTGGACACAGAG--GCTCATT-CGGAGTCTGCAGGATG----------------AGT--CCAGCCTC-TCAGGCCCAGACGCCTCGGGGACCCTCCACAGGT------ i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1936895 145 + 11732439 ACAGCCACATTCTCTGCCACAGCTGGAAGACTTGG-----GGGAAAACAGAAAAGGGTTTTGCTGGACAGAGAG--GCTCATTCCAGAGTCTACAGAATG----------------AGT--CCAGCCTCATTGGGCCCAGACACCTCGGGGACCCTCCACAGGTGGCCCC i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181101027 166 + 182113224 AGAGCTTCTTTGCCTCCAAAGGCTAGAATGGTGCCGGGG-AAGGTCACA-AAAAGGGCTTTGCTGGGCAAAGAGAAGCTCACTTCCAGGACTATAGGATGATTATCCTGGAAGAAAAGT--CTGATCTCATCAGGCCCTGATGCTTTGAGGACCCTCAGCATATAATGTG i mm10.chr2 C 0 C 0 s canFam3.chr24 47077299 124 + 47698779 ----CCAATCCCTCTGC-AAAGCCGGGGCAG------GGCCAGGGCCTAGAGGACTCCCTCGCCGGGCACAGAG--GCCCACTCTGGGTGC----AGACG----------------AGCTGCCGGAAACGT---GCTCGGATCCTTGGCAAGCC----------GGCCTG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 94379 82 + 555560 ----------ACTGTGCCAAGGC-----------------CAGGCCACAGGAGAAGGCCCCGCCGGGCAGGGAGCAGC-----CTGGTGGCTGCAGCA-G----------------ACC--GCAAGCT------GCCCA------------------------------- i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22153883 16 + 22939663 I a score=664321.000000 s hg38.chr20_KI270871v1_alt 14281 64 + 58661 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCTGTCTTC--CTGCCCTGCCGCC s panTro5.chr20 65584117 64 + 66533130 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCGTCTTC--CTGCCCTGCCGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353324 64 + 62195757 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCGTCTTC--CTGCCCTGCCGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763883 64 - 1017659 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCGTCTTC--CTGCCCTGCCGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109254621 64 - 110113093 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCGTCTTA--CTGCCCTGCCGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91974213 64 - 92844088 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621750 64 + 96509753 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16077206 64 - 16982598 GCTCTACTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2920580 64 - 3785965 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89592174 64 - 90373283 GCTCTGCTCCAAGCCCCTTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5467716 64 + 6149316 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTGGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4700583 64 - 5823884 GCTCTGCTCCGAGCCCCCTTCCCAGTCCTTGTC---ATAC-CCACC----------------------CCCATCTTC--CTGCCCTGCCGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57407460 58 + 159171411 GCTCTGCTCGAAGCCGAGTTCCCAGTTCTGGTC---ACAC-CCACC----------------------ACCGTCTGC--CTGCCCT------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528756 64 + 16356641 CGTCTGCTCCCGGCCCCGTTCCCAGTCCTGGTC---ACAC-CCACC----------------------GCCGTCTGC--CTACCCCACCACC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375149 58 + 1231380 ------CCCCGAGCCCTGTTCCCAGTCCTGGTC---ACAT-CCACC----------------------ACCGTCTGC--CTGCGCCACCACC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937040 64 + 11732439 ACTCTGCCCCGAGCCCTGTTCCCAGTCCTGGTC---ACAC-CCACC----------------------GCCGTCTGC--CTGCCCCATCACC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22153899 69 + 22939663 GCTGTGCTCCAAGATCCCTTCCCAGTCCTGGCCCATAACC-CCACT----------------------GCCCCCAACCACTGCCCTATTGTC i otoGar3.GL873542 I 16 I 380 s mm10.chr2 181101193 80 + 182113224 TCTCTGTTCC-------TTTTCCTGACCTGGTC---ACACATCACTGGCAGCCCATGCTAGGCCTCTGCCTGCCTGT--CTGCCCTGGCATT i mm10.chr2 C 0 I 2 s canFam3.chr24 47077423 81 + 47698779 GCTCTGC----AGCCCCTCTCCCCGCCCAGGTC---ACGC-CCACC-CGGGACAACCCCACGCACCCCCCCACCTCC--CCCCCTTCCCGGC i canFam3.chr24 C 0 I 5 s dasNov3.JH567899 94461 43 + 555560 -------------------CCCCAGGcccccac---ccac-cccca----------------------cccaccccc--aTGCGCTGCCG-- i dasNov3.JH567899 C 0 C 0 a score=1620484.000000 s hg38.chr20_KI270871v1_alt 14345 239 + 58661 CACAG-CCACCAGCAG----------GACC------AAGTCCGGG----CCCGCCGAAGCC----CCCCAGGCA-GGTATGCAGGCACCTC------CTCACGTCTGGG----------TGGGACGTCCCCCTCTTCA------CCCCT--C--------------C-CCACTCCCACCC----ACCTC----ACTCTGCCCACTCCT----CCTCAC---CACCCATG------CCCTCACAGCATTCCAGC--TCGCTTCAGGAAGAG------ACA--CCCT-------------CCTCTGGG--GCCT--CCC----CCACCCGGCTCCCTGACCCACCTGAACCCCCTCCA- s panTro5.chr20 65584181 236 + 66533130 CACAG-CCACCAGCAG----------GACC------AAGTCCGGG----CCCGCCGAAGCC----CCCCAGGCG-GGTGTGCAGGCACCTC------CTCACGTCTGGG----------TGGGACGTCCCCCTCTTCA------CCCCT--C--------------C-CCACTCCCACCC----ACCTC----ACTGCGCCCACTCCT----CCTCAC---CACCCATG------CCCTCACAGCATTCCA------GCTTCAGGAAGAG------GTA--CCCT-------------CCTCCGGG--GCCT-CCCC----CCACCCGGCTCCCTGACCCACTTGAACCCCCTCCA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353388 239 + 62195757 CACAG-CCACCAGCAG----------GACC------AAGTCCGGG----CCCGCCGAAGCC----CCCCAGGCG-GGTGTGCAGGCGCCTC------CTCACGTCTGGG----------TGGGACGTCCCCCTCTTCA------CCCCT--C--------------C-CCACTCCCACCC----ACCTC----ACTCCGCCCACTCCT----CCTCAC---CACCCATG------CCCTCACAGCATTCCAGC--TCGCTTCAGGAAGAG------GCA--CCCT-------------CCTCCAGG--GCCT--CCC----CCACCCAGCTCCCTGACCCACTTGAACCCCCTCCA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 763947 240 - 1017659 CACAG-CCACCAGCAG----------GACC------AAGTCCGGG----CCCGCCGAAGCC----CCCCAGGCG-GGTGTGCAGGCGCCTC------CTCACGTCTGGG----------TGGGACGTCCCCCTCTTCA------CCCCT--C--------------C-CCACTCCCACCC----ACCTC----ACTCCGCCCACTCCT----CCTCAC---CACCCATG------CCCTCACAGCATTCCAGC--TCGCTTCAGGAAGAG------GCA--CCCT-------------CCTCCGGG--GCCTCCCCC----CCACCCGGCTCCCTGACCCACCTGAA-CCCCTCCA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109254685 240 - 110113093 CACAG-CCACCAGCAG----------GACC------AAGTCCGGG----CCCGCTGAAGCC----CCCCAGGCG-AGTGTGCAGGCGCCTC------CCCACGTCTGGG----------TGGGACATCCCCCTCTTCA------CCCCT--C--------------C-CCACTCCCACCC----ACCTC----ACTCCGCCCACTCCT----CCTCAC---CGCCCGTG------CCCTCACAGCACTCCAGC--TTGCTTCAGCAAGAG------ACA--CCCT-------------CCTCCGGG--GCCTCCGCC----CCACCCGGCTCCCTGACCCACTTGAC-ACCCTCCA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91974277 228 - 92844088 CACAG-CCACCAGCAG----------GACC------AGGTCCGGG----TCCCCTGAAGCC----CCCCAGGTG-AGCGTGCAGGCGCCTC------CCCACGTCTGGG----------TAGGACGTCCCCCTCTTCA-----CCCCCC--C--------------CACCACTCCCCCCC----ACCTC----ACTCCGC---CTGCT----CCTCAC---CGCCCGTG------CCCTCAGAGTATTCCAGC--TAGCTTTAGAAAGAG------ATG--CCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGCTCCCTGA------------CCCACCC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95621814 228 + 96509753 CACAG-CCACCAGCAG----------GACC------AGGTCCGGG----TCCCCTGAAGCC----CCCCAGGTG-AGCGTGCAGGCGCCTC------CCCACGTCTGGG----------TAGGACGTCCCCCTCTTCA-----CCCCCC--C--------------CGCCACTCCCCCCC----ACCTC----ACTCCGC---CTGCT----CCTCAC---CGCCCGTG------CCCTCAGAGTATTCCAGC--TAGCCTCAGAAACAG------ATG--CCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGCTCCCTGA------------CCCACCC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16077270 227 - 16982598 CACAG-CCACCAGCAG----------GACC------AGGTCCGGG----TCCCCTGAAGCC----CCCCAGGTG-AGCGTGCAGGCGCCTC------CCCACGTCTGGG----------TAGGACGTCCCCCTCTTCA------CTCCC--C--------------CACTACTCCCCCCC----ACCTC----ACTCCAC---CTGCT----CCTCAC---CGCCCGTG------CCCTCAGAGTATTCCAGC--TAGCTTTAGAAAGAG------ATG--CCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGCTCCCTGA------------CCCACCC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2920644 230 - 3785965 CACAG-CCACCAGCAG----------GACC------AGGTCCGGG----TCCCCTGAAGCC----CCCCAGGTG-GGCGTGCAGGCGCCTC------CCCATGTCTGGG----------TAGGACGTCCCCCTCTTCA-----CCCCAC--C--------------CACCACTCCCCCCC----ACCTC----ACTCCGC---CTGCT----CCTCAC---CGCCTGTG------CCCTCAGAGTATTCCAGC--TAGCTTCAGAAAGAG------ATGCCCCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGCTCCCTGA------------CCCAACC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89592238 239 - 90373283 CACAG-ACACCAGCAG----------GACC------AGGTCCGGG----TCTCCTGAAGCC----CCCCAGGCG-GGCGTGCAGGCGCCTC------CCCATGTCTGGG----------TGGGACATCCCCCTCTTCA------CTCCCTGC--------------CACCACTCCCACCC----ACCTC----ACTCCGC---CTGTT----CCTCAC---CGCCCATG------CCCTCAGAGTATGCCAGC--TAGCTTCAGGAAGAG------ACG--CCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGCTCCCTGACCCACCTGT--CCCCACCC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5467780 227 + 6149316 CACAG-CCACCAGCAG----------GACC------AGGTCCGGG----TCCCCTGAAGCC----CCCCAGGTG-GGCGTGCAGGCGCCTC------CCCATGTCTGGG----------TGGGACGTCCCCCTCTTCA------CCCCC--C--------------CACCACTCCCCCCT----ACCTC----ACTCCGC---CTGCT----CCTCAC---CGCCCGTG------CCCTCAGAGTATTCCAGC--TAGCTTCAGAAAGAG------ATG--CCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGCTCCCTGA------------CCCACCC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4700647 237 - 5823884 CACAG-CCACCAGCAG----------CACC------AGGTCCGGG----TCCCCTGAAGCC----CCCCAGGCG-GGCGAGCAGGCGCCTC------CCCACGTCTGGG----------TGGGACGTCCCCCTCTTCA------CCCCC--C--------------CACCACTCCCACCC----ACCTC----ACTCCGC---CTGCT----CCTCAC---CGCCCGTG------CCCTCACAGTATTCCAGC--TAGCTTCAGGAAGAG------ATG--CCCT-------------CCTCGGGA--GCCTCTGCC----CCACCCGGATCCCTGACCCACCTGT--CCCCACCC- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57407518 225 + 159171411 ----G-CCACCAGCAG----------GACC------AGGTGCAGG----CCC-CCGAAACC----CACCCAGCA--GCGTGC-AGCACCTC------CCCACACCT-GG----------TGGGATGTCCTCTTCG---------ACCCA--C--------------C-CCACTCCCACCC----ACCTC----ACCCTGCC--CTCCT----CCTTGC---TGCC-GTT------CCCTCACAGTGTTCCAGC--TCACTTCAGGAGGAG------AAA--CCCT-------------CCTTGGGT--GCCTCAGCC----CCACCCGGCTCCCTGACCCACCTGA--CCCTGCCC- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15528820 227 + 16356641 CACAG-CCACCAGCAG----------GACC------AGGTCCAGA----CCC-CTGAAACC----CACTAGGCG--GCGGGCAAGCACCTC------CCCCCATCTGGG----------CGGGACGTACTC--------------CTCC--C--------------C-CCATTCCCACCC----GCCTC----ACCCTGCCCACTCCT----CC-CAC---CGCC-GTT------CCCTCACAGTGTTCCAGC--TCGCTTCAAGAGGAG------ATG--CCCT-------------CCTTGGGG--GCCTCAGAC----CCACCCGGCTCCCTGACCCACCTGG--CCCCACCC- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375207 234 + 1231380 CACAG-CCACCAGCAG----------TACC------AGGTCCAGG----CCC-CCAAAACC----CACCAGGCG--GCGTGCAAGCACCTC------CCCGCATCTGTG----------TGGGACATTCCCCTCTT-C------GCCCC--c--------------c-ccactcccaccc----acctc----accttgcccactccg----ccttgc---ctca-gtt------ccctcacagcgtcccagc--tcacttcaGGAGGAG------ACG--CCCT-------------CCTTGGGG--GCCTCAGCC----CCACCCGGC-CCCTGACACACCTGA--CCCCGAGC- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937104 232 + 11732439 CGCAG-CCACCAGCAG----------GACC------AGGTCCAGG----CCC-CCGAAACT----CACCAGGGG--GCATGCAAGCCCCTC------CCCACATCCGGG----------TGGGACGTCCTCCTCTTCC------cccca--c--------------c-ccactcccaccc----acctc----acccTGCCCACTCCT-------TGC---TGCC-ATT------CCCTCACAGCGTTCCAGC--TCACTTCAGGAGAAG------ACG--CCCT-------------CCTTGGG---GCCTCAGCC----CCAcccggctccctgacccacctga--ccccgccc- i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181101275 241 + 182113224 GTCAGTCCATTGTCAG----------AGAC------AGTATTGGG----------GAAGACATGTTCCCATGCG--GAGGGTGAAC-CCTT------GCTGCCCAGGGG----------TGAGATAATCTTCTTG---------TCCCA--T--------------C-CCACTTTCAGCCTTAGACC-------CTCAGC---TTCCT----CCTAGCAAATGCCTGTT------CCATGAAAT--TCCCACC--TTGTTTTAGAATAAACACAACAGT--CCCT----------TGGCTTCCGTA--ACCCCAGGCCCTGCCACTCATCTCCCAGT----TCTGA--TCCTGCTC- i mm10.chr2 I 2 C 0 s canFam3.chr24 47077509 284 + 47698779 GGCAG-CTCCAGGCAG----------GACCTCCATGGAGGCCGAG----CATAACTAAGTC----CTCCCTGTGCAGCCTGGCCGCCCACC------CCCAGCCACAGGACCAGCAGCCCAGGGGCCCCCAGTCTGCT------CCCCA--CATGGGGGGTCAGTTC-CCTCCCCCACCC----ACC-------CTCCGCCCAAGCCTGAGGTCTCAC---TGCT-TTC------TGCCCACCCCACTTCGCA--TCTCATTGTGAGGAA------ACA--CCTCTTGCCCCACTTGACCTCAGGGTCGCTCCTTCC----TGGCCCAGCCCCC---ACCGGCTGACACCCCCCTA- i canFam3.chr24 I 5 I 1656 s dasNov3.JH567899 94504 277 + 555560 AGCAG-CCCCAGGTGGAGGGGGACCTGACA------AGGCGGGGGGCAGTTTCCAGGGGCC----CTCCAGGCC-GCTGACCACATCACCCAGGGGACCAGCACCCCTG----------CCTGGCGCCCATCCCACCGGAGTGGACCCT--C--------------TACCACTCGCCCCT----CCCCTGTAAACCTCGGCCACAGGG----AATCGT---CCCCTGGGAGGTCCCTCTCCAAGGACCCCGCCCTCTGCCCCCGGGCGCC------CGG--CTCG-------------CTCTTGCT--GCCC--ACA----GCACCTGCCCCCCTGGCCCCAAAGA--CCCCCTCTG i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22153968 380 + 22939663 I a score=462854.000000 s hg38.chr20_KI270871v1_alt 14584 48 + 58661 CTCCGCCTCCTCA-GCCTCTGCTCCCAGG-CCCTGCCATCCCA----TCCACGG s panTro5.chr20 65584417 48 + 66533130 CTCCGCCTCCTCA-GCCTCTGCTCCCAGG-CCCTGCCATCCCA----TCCACGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353627 48 + 62195757 CTCCGCCTCCTCA-GCCTCTGCTCCCAGG-CCCTGCCATCCCA----TCCACGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764187 48 - 1017659 CTCCGCCTCCTCA-GCCTCTGCTCCCAGG-CCCTGCCATCCCA----TCCACGG i gorGor5.CYUI01015750v1 C 0 I 1 s nomLeu3.chr13 109254925 48 - 110113093 TTCCACCTCCTCA-GCCTCTGCTCCCAGG-CCCTGCCATCCCA----TCCATGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91974505 48 - 92844088 CTCCGCCTCCTCA-GCCTCTGCTCCTAGG-CCCCGCCATCCCG----TCCACGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95622042 48 + 96509753 CTCCGCCTCCTCA-GCCTCTGCTCCTAGG-CCCCGCCACCCCG----TCCACGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16077497 48 - 16982598 CTCCGCCTCCTCA-GCCTCTGCTCCTAGG-CCCCGCCATCCCG----TCCACAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2920874 48 - 3785965 CTCCGCCTCCTCA-GCCTCTGCTCCTAGG-CCCCGCCATCCCG----TCCACGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89592477 48 - 90373283 CTCCGCCTCCTCA-GCCTCTGCTCCCAGG-CCCCGCCATCCCG----TCCACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5468007 48 + 6149316 CTCCGCCTCCTCA-GCCTCTGCTCCTAGG-CCCCGCCATCCCG----TCTACGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4700884 48 - 5823884 CTCCGCCTCCTCA-GCCTCTGCTCCCAGG-CCCCGCCATCCCG----TCCACGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57407743 48 + 159171411 CTCTGACTGCTCA-GCCTCAGCTCCCAGG-CCCTGCCATTCCA----TCCACAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15529047 48 + 16356641 CTCTGCCCGCTCA-GCCTCGGCTCCCCGG-CCCCGGCATTCCG----TCCACAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375441 48 + 1231380 CTCCGCCTGCTCA-GCCTCGGCTCCCAGG-CCCGGCCGTTCCG----TCCATAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937336 49 + 11732439 ctccgcctgctca-gcctcggctcccaggcccctgccATTCCG----TCCACAG i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181101516 45 + 182113224 CAGGGCACCTTTATGCTGCAGCTCC-----CTCTTGTGTCTCT----TTTAGCG i mm10.chr2 C 0 I 4 s dasNov3.JH567899 94781 51 + 555560 -GGCAGCCCCTCA-ACGCCGACTGCCCTT-CCTCGCCAGCCCAGCTCCCCGCTG i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I a score=162116.000000 s hg38.chr20_KI270871v1_alt 14632 62 + 58661 CCTCCA-----CCCCTCCCCACACCC---------------------ACCTGTGGAGCACTCCCC---------------ACTGGGGCCA-------CGTCCTGGTCTCT s panTro5.chr20 65584465 62 + 66533130 CCTCCA-----CCCCTCCCCACACCC---------------------ACCTGTGGAGCACTCCCC---------------ACTGGGGCCG-------CGTCCTGGTCTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353675 62 + 62195757 CCTCCA-----CCCCTCCCCACACCC---------------------ACCTGTGGAGCACTCCCC---------------ACTGGGGCCG-------CGTCCTGGTCTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764236 62 - 1017659 CCTCCA-----CCTCTCCCCACACCC---------------------ACCTGTGGAGCACTCCCC---------------ACTGGGGCCG-------CGTCCTGGTCTCT i gorGor5.CYUI01015750v1 I 1 C 0 s nomLeu3.chr13 109254973 62 - 110113093 CCTCCA-----CCCCTCCCCACACCC---------------------ACCTGTGGAGCACTCCCC---------------ACTGGGGCCG-------CGTCCTGGTCTCT i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57407791 61 + 159171411 CCTCCA-----CCCT-CCCCACCCCC---------------------ACCTGTGGAGCACTCCCC---------------ACTGGGGCCA-------TGTCCTGGCCTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15529095 60 + 16356641 CCTCCA-----CCCT--CCCACCCCC---------------------GCCTGTGGAGCACTCCCC---------------ACTGGGGCCA-------TGTCCTGGCCTCT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375489 51 + 1231380 CCTCCA-----CCCT----------C---------------------ACCTGTGGAGCACTCCCC----------------CCGGGGCCA-------TGTCCTGGCCTCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937385 61 + 11732439 CCTCTA-----CCCT-CCCCACCCCT---------------------ACCTGTGGAGCACTCCCC---------------ACTAGTGCCA-------TGTCCTGGCCTCT i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181101565 60 + 182113224 CCTCCCAGAGTTCCGACTACACACCA---------------------GGCTCCTCAGGACCCCCC---------------ACC--------------TCATCTGGTCTTT i mm10.chr2 I 4 I 70 s dasNov3.JH567899 94832 105 + 555560 CCTGCA-----GCCCACTCTGCCCTCTTCTTCTAGAACAACGCAGAGGCCCACGGAGCCGGCCCCCAAGCGAGCTGGCCCCCCAGGGCCGCTCTGCTCGTCTCGGCCCCA i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=151120.000000 s hg38.chr20_KI270871v1_alt 14694 53 + 58661 ---CCTCTGCGTTGGAG-GCAGGACGGCCACCTCCCAGCCCAGCCC-----TCACCCAGCTG s panTro5.chr20 65584527 53 + 66533130 ---CCTCTGCGTTGGAG-GCAGGACGGCCACCTCCCAGCCCAGCCC-----TCACCCAGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353737 53 + 62195757 ---CCTCTGCGTTGGAG-GCAGGACGGCCACCTCCCAGCCCAGCCC-----TCACCCAGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764298 53 - 1017659 ---CTTCTGCGTTGGAG-GCAGGACGGCCACCTCCCAGCCCAGCCC-----TCACCCAGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255035 53 - 110113093 ---CTGCTGCGTTGGAG-GCAGGACGGCCACCTCCCAGCCCAGCCC-----TTACCCAACTG i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57407852 59 + 159171411 ---CCTCTGCCTCTGAGAACAGGGCGGCCACCTCCCAGCCCAGCCCAGCTGTCACCCAGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15529155 58 + 16356641 ---CCTCTGTATCCGAG-GCAGGGCGGCCACCTCCCAGCCCAGCCCAGCCCTCACCCAGCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375540 58 + 1231380 ---CCTCTGCATCCAAG-GCAGGACGGCCACCTGCCAGCCCAGCCCAGCCCTCACCCAGCTG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937446 58 + 11732439 ---CCTCTGCATCCAAG-GCAGGGcagccacctcccagcccagcctagccctcacccagcTG i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 94937 52 + 555560 CCCCCGCAGCATC--AG-CCAGCTCCTCCCGGCCTCGGCCCAGCCC-----TGACCC--CTG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181101625 70 + 182113224 I e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=25865.000000 s hg38.chr20_KI270871v1_alt 14747 6 + 58661 ACTCCC s panTro5.chr20 65584580 6 + 66533130 ACTCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353790 6 + 62195757 ACTCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764351 6 - 1017659 ACTCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255088 6 - 110113093 ACTCCC i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57407911 6 + 159171411 ACCCCC i calJac3.chr5 C 0 M 431 s saiBol1.JH378156 15529213 6 + 16356641 ACCCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375598 6 + 1231380 ACCCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937504 6 + 11732439 ACCCCC i aotNan1.NW_018500483v1 C 0 I 1 s mm10.chr2 181101695 6 + 182113224 ACCTCT i mm10.chr2 I 70 C 0 s dasNov3.JH567899 94989 6 + 555560 ACCCCC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=459939.000000 s hg38.chr20_KI270871v1_alt 14753 210 + 58661 TACGCGGCTATGGCCACGGCCACCCCC-------TGGAGAtgccc---ctgcccgt-----------------gtcctc-----cctctgccccaggctgggccgtggc-------ccacatcctccag--------------------actcttcac------ctg-ccctgcctctgcccACCCAGGCTTACT--------TGGTCCTCCAGATGGGCATC---CTTGCCACTCTCCTGACCAAACACT--CAATGGCTCCCC-ACTGCCTCCAAAGCAAAAGG-ATGG s panTro5.chr20 65584586 210 + 66533130 TACGCGGCTATGGCCACGGCCGCCCCC-------TGGAGATGCCC---CTGCCCGT-----------------GTCCTC-----CCTCTGCCCCAGGCTGGGCCGTGGC-------CCACATCCCCCAG--------------------ACTCTTCAC------CTG-CCCTGCCTCTGCCCACCCAGGCTTACT--------TGGTCCTCCAGATGGGCATC---CTTGCCACTCTCCTGACCAAACACT--CAATGGCTCCCC-ACTGCCTCCAAAACAAAAGG-ATGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61353796 210 + 62195757 TACGCGGCTATGGCCACGGCCGCCCCC-------TGGAGATGCCC---CTGCCCGT-----------------GTCCTC-----CCTCTGCCCCAGGCTGGGCCGTGGC-------CCACATCCCCCAG--------------------ACTCTTCAC------CTG-CCCTGCCTCTGCCCACCCAGGCTTACT--------TGGTCCTCCAGATGGGCATC---CTTGCCACTCTCCTGACCAAACACT--CAATGGCTCCCC-ACTGCCTCCAAAACAAAAGG-ATGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764357 209 - 1017659 TATGCGGCTATGGCCACGGCCG-CCCC-------TGGAGATGCCC---CTGCCCGT-----------------GTCCTC-----CCTCTGCCTCAGGCTGGGCTGTAGC-------CCACATCCCCCAG--------------------ACTCTTCAC------CTG-CGCTGCCTCTGCCCACCCAGGCTTACT--------TGGTCCTCCAGGTGGGCATC---CTTGCCACTCTCCTGACCAAACACT--CAATGGCTCCCC-ACTGCCTCCAAAACAAAAGG-ATGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255094 210 - 110113093 TATGCGGCTATGGCCACGGCCGCCCCC-------TGGAGATGCCC---CTGCCCAT-----------------GTCCTC-----CCTCTGCCCCAGGCTGGGCCGTGGC-------CCACATCCCCCAG--------------------ACTCTTCAC------CTG-CCCTGCCTCTGCCCACCCAGGCTTACT--------TGGTCCTCCAGACGGGCATC---CTTGCCACTCTCCTGACCAAACACT--CAATGGCTCCCC-ACTACCTCCAAAACAAAAGG-ATGG i nomLeu3.chr13 C 0 C 0 s saiBol1.JH378156 15529219 203 + 16356641 GACGTGGCCACAGCCATGGCCGCCCCC-------TGGAGATGCCC---CTGCCTGT-----------------GTCCTT-----CCTCTGCCCCAGACTGGGC-GTGGC-------CCACAT-CCCCAG--------------------ACTCTTAAC------CTG-CCCTGCCTCTGCCCGCCCAGCCTTACC--------TGGTCCTCCAGACAGGCCTC----CTGCCACTCTCCTGACCAAACACT--CAATGCCTCCCC-ATTGCT-CCGAAATAAAAGG-A--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375604 207 + 1231380 TACATGGCCACAGCCATGGCCGCCCCC-------TGGAGATGCCC---CTGCCCGT-----------------GTCCTT-----CCTCTGCCCTAGGCTGGGC-GTGGC-------CCACAT-CCCCAG--------------------ACTCTTCAC------CTG-CCCTGCCTCTGCCCACCCAGCCTTACC--------TGGTCCTCCAGACAGGCCTC----CTGCCACTCTCCTGACCAAACACT--CAATGCCTCCCC-ATTGCCACCAAAACAAAAGG-ACGG i cebCap1.NW_016107870v1 C 0 I 46 s aotNan1.NW_018500483v1 1937511 184 + 11732439 TACGTGGCCACAGCCATGACCGCCCCC-------TGGAGAtgccc---ctgcccgt-----------------gttctt-----cctctg---------------------------------ccccag--------------------actcttcac------ctg-ccctgcctctgccCACCCAGCCTTACC--------TGGTCCTCCAGACAGGCATC---TTTGCCACTCTCCTGACCAAACACT--CAGTGCCTCCCC-ATTGCCTCCAAAACAAAAGG-ACGG i aotNan1.NW_018500483v1 I 1 C 0 s mm10.chr2 181101701 199 + 182113224 TAGACTGGCATTGCCA--GCCCTCCTCTCTGTATTGGAAATGTCCTGTCTTCCTGT-----------------GTCTG--------TTTACCTCA--CTGGG------------------ACTCTCTAG--------------------ACTCTCACCATCTCTCTG-TCCCACCCCCACTCCAGTAGGTCTCTC--------TAGCATGCCCAGCAG----C---CTTACCCTTCTCCC------ACATT--TAATGGCTCCCCAACCACCTCTAAAACAGAAGG-GCAG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 94995 263 + 555560 -----------GACCCCGCCAGGCTCC-------CGGAGGTCCAG---CGTCCCCTCTAACACGGAGCACACAGCACCCAAGAGCCACTGCCCCAGGCTCGCCCGCGTCGGGCGCTCGGCCGTCCCCAGGGGACCTGGGACCTCGTTGCACCTTCACT------CTGTCCCCGCCCGAGCCCCTGCAGCTCTTCCCTCCCCAGTGGCCTCCTAGACGGACCCCGGCTTTGTCTCTCCCTCGCCCACACACCTACAGTGGCTCCCC-AATGCCTTCGACGTAAAGGGTACTG i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e calJac3.chr5 57407917 431 + 159171411 M e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=45857.000000 s hg38.chr20_KI270871v1_alt 14963 51 + 58661 CTGACTCCATTGTCCCTCAGGGCTTGGTGATCA---CCCTACTGCCGACTCCCA----------------- s panTro5.chr20 65584796 51 + 66533130 CTGACTCCATTGTCCCTCAGGGCCTGGTGATCA---CCCTCCTGCCGACTCCCA----------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354006 51 + 62195757 CTGACTCCATTGTCCCTCAGGGCCTGGTGATCA---CCCTCCTGCCGACTCCCA----------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764566 51 - 1017659 CTGACTCCATTGTCCCTCAGGGCCTGGTGATCA---CCCTCCTGCCGACTCCCA----------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255304 51 - 110113093 CTGACTCCACTGTCCCTCAGGGCCTGGCAATCA---CCCTCCTGCCAACTCCCA----------------- i nomLeu3.chr13 C 0 C 0 s saiBol1.JH378156 15529422 41 + 16356641 ------CCGCTGCCCCCC--GGCCTGCCCGTCA----CCTGCCGCCAACTCCC------------------ i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1937695 47 + 11732439 CTGACTACACTGCCCTCC--GGCCTGGCAATCA----CCTGCCGCCAACGCCC------------------ i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181101900 23 + 182113224 CTGAGTTCACTG-------------------------------GCCAACTCGCT----------------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 95258 55 + 555560 -----------GTGCTTC-----CTGGCAATCAAGACCCAGACAGCTGCCCCCACAAACCTGCCTCTCCTG i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 375811 46 + 1231380 I e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e calJac3.chr5 57407917 431 + 159171411 M e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=138991.000000 s hg38.chr20_KI270871v1_alt 15014 80 + 58661 ---CTTCG-TCCAGCCACACTCCTCCCTCCAGAG---CTGTCCAGA------AGCCCCTCCCTGC-------------ACCCCACCAGCCTCTGGTG-CCCCCCCAC s panTro5.chr20 65584847 81 + 66533130 ---CTTCG-TCCAGCCACACTCCTCCCTCCAGAG---CTGTGCAGA------AGCCCCTCCCTGC-------------ACCCCACCAGCCTCTGGTGCCCCCCCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354057 81 + 62195757 ---CTTCG-TCCAGCCACACTCCTCCCTCCAGAG---CTGTGCAGA------AGCCCCTCCCTGC-------------ACCCCACCAGCCTCTGGTGCCCCCCCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764617 80 - 1017659 ---CTTCA-TCCAGCCACACTCCTCCCTCCAGAG---CTGTCCAGA------AGCCCCTCCCTGC-------------ACCCCACCAGCCTCTGGTG-CCCCCCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255355 81 - 110113093 ---CTTCG-TCCAGCCACATTCCTCCCTCCAGAG---CTGCCCAGA------AGCCCCTCCCTGC-------------CCCCCACCAGCCTCTGGTGCCCCCACTGC i nomLeu3.chr13 C 0 C 0 s saiBol1.JH378156 15529463 91 + 16356641 ---CTTTG-TCCAGCAACACTCCCCCCTCCAGAG---CTGCCCAGA------AG-CCCTCCCTGCCCCAGAGCAACTGCCCCCACCGGCCTCTGGTACCCCCTGC-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375857 91 + 1231380 ---CGTAG-TCCAGCAACACTCCCCCCTCCAGAG---CTGCCCAGA------AG-CCCTCCCTGCCCCACAGCAACTGCCCCCACCAGCCGCTGGTACCCCCTGC-- i cebCap1.NW_016107870v1 I 46 C 0 s aotNan1.NW_018500483v1 1937742 91 + 11732439 ---CTTTG-TCCAGCAACACTCCTCCCTCCAGAG---CCGCCCAGA------AG-CCCTCCCTGCCCCACAGCAACTGCCCCCACTGGTCTCTGGTACCCCCTGC-- i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181101923 100 + 182113224 ---CTTCACTCCAATCCTGTTCCTCCAGGCAGAGACACAGCCTACACCCCTGAG-CCACTGCTGTCTCTGGTTATCTTCTCCTCCCCTCTCCTTTTACCCCCAT--- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 95313 78 + 555560 CTGGTCCC-TTCAGGCATACTACACCTGC---AC---CCACCTGcc------cgccccaccccgc-----gccatctgcccccgcctgcccc----gccc------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e calJac3.chr5 57407917 431 + 159171411 M e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=110639.000000 s hg38.chr20_KI270871v1_alt 15094 39 + 58661 AGGCTAGGCAGGTGTGAGCTGGTAAAGCCGTGCCTGGCC s panTro5.chr20 65584928 39 + 66533130 AGGCTAGGCAGGTGTGAGCTGGTAAAGCCGTGCCTGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354138 39 + 62195757 AGGCTAGGCAGGTGTGAGCTGGTAAAGCCGTGCCTGGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764697 39 - 1017659 ATGCTAGGCAGGTGTGAGCTGGTAAAGCTGTGCCTGGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255436 39 - 110113093 AGGCTAGGCAGGTGTGAGCTGGTAAAGCCCTGCCTGGCC i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57408348 39 + 159171411 AGCCTGGGCAGGTGTGAGCTGGTATAGCCGCACCTGGCC i calJac3.chr5 M 431 C 0 s saiBol1.JH378156 15529554 39 + 16356641 AGCCTGGGCAGGTGTGAGCTGGTACAGCCGCACCTGGCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375948 39 + 1231380 AGCCTGGGCAGGTGTGAGCTGGTACAGCCGCACCTGGCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937833 39 + 11732439 AGCCTGGACAGGTGTGAGCTGGTACAGCCGCACGTGGCC i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181102023 39 + 182113224 AGGTTGCACAGGCTCTGGCAAGGGTAGCTACATCTGGGC i mm10.chr2 C 0 C 0 s dasNov3.JH567899 95391 11 + 555560 ----------------------------cgcccaagccc i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I e manLeu1.NW_012104365v1 5468055 0 + 6149316 C e colAng1.NW_012114444v1 4700932 0 - 5823884 C e chlSab2.chr2 89592525 0 - 90373283 C e cerAty1.NW_012001373v1 2920922 0 - 3785965 C e macNem1.NW_012014244v1 16077545 0 - 16982598 C e macFas5.chr10 95622090 0 + 96509753 C e rheMac8.chr10 91974553 0 - 92844088 C a score=2265833.000000 s hg38.chr20_KI270871v1_alt 15133 268 + 58661 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTG-CCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTGCAGAGGACAGTCCGCTGTC-----CAAGTCGGGATGGAGCAGGAA-C---CAGGCAGCTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGCCTGGCCGGAGTCTGTCTGGGGGCCACAGGTGG---CTC---CCCACCCCTCCTTGATGGGA-CCCACAC---G------CACGCAGGCCCAGGTGAGAGACACA---C-ACGTCAGCCCTCAGAG s panTro5.chr20 65584967 269 + 66533130 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTG-CCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTGCAGAGGACAGTCCGCTGTC-----CAAGTCGGGACGGAGCAGGAACC---CAGGCAGCTGGTGAGCTGGTGCTGTGGGCGCAGCAGAGCCCAGCCTGGCTGGAGTCTGTCTGGGGGCCACAGGTGG---CTC---CCCACCCCTCCTTGATGGGA-CCCACAC---G------CACGCAGGCCCAGGTGAGAGACACA---C-ACGTCAGCCCTCAGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354177 269 + 62195757 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTG-CCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTGCAGAGGACAGTCCGCTGTC-----CAAGTCGGGACGGAGCAGGAACC---CAGGCAGCTGGTGAGCTGGTGCTGTGGGCGCAGCAGAGCCCAGCCTGGCTGGAGTCTGTCTGGGGGCCACAGGTGG---CTC---CCCACCCCTCCTTGATGGGA-CCCACAC---G------CACGCAGGCCCAGGTGAGAGACACA---C-ACGTCAGCCCTCAGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 764736 267 - 1017659 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTG-CCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTGCAGAGGACAGTCCGCTGTC-----CAAGTCAGGACGGAGCAGGAACC---CAGGCAGCTGGTGAGCTGGTGTTGT-GGCGCAGCAGAGCCCAGCCTGGCCGGAGTCTGTCTGGGGGCCACAGGTGG---CTC---CCCA-CCCTCCTTGATGGGA-CCCACAC---G------CACGCAGGCCCAGGTGAGAGACACA---C-ACGTCAGCCCTCAGAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109255475 269 - 110113093 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTG-CCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCTCTGCAGAGGGCAGTCCACTGTC-----CAAGTCGGGACGGAGCAGGAACC---CAGGCGGCTGGTGAGCTGGTGTTGTGGGCACAGCAGAGCCCAGACTGGCCGGAGTCTGTCTGGGGGCCACAGGTGG---CTC---CCCACACCTCCTTGACGGGA-CCCACAC---A------CACGCAGGTCCAGGTGAGAGACACA---C-ACGTCAGCCCTCAGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91974553 265 - 92844088 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGATCA-----GAGCAGGAACC---CAGGCGACTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGTTGGCTGGTGTCTGTCCGGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATGAGAGACACA---C-ACGTCAGCCCTCAGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95622090 265 + 96509753 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGATCA-----GAGCAGGAACC---CAGGCGACTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGTTGGCTGGAGTCTGTCCGGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATGAGAGACACA---C-ACGTCAGCCCTCAGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16077545 265 - 16982598 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGATCA-----GAGCAGGAACC---CAGGCGACTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGTTGGCTGGAGTCTGTCCGGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATGAGAGACACA---C-ACGTCAGCCCTCAGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2920922 265 - 3785965 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGTAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGGTCA-----GAGCAGGAACC---CAGGCGACTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGCTGGCTGGAATCTGTCCGGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATGAGAGACACA---C-ACGGCAGCCCTCAGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89592525 265 - 90373283 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGGTCA-----GAGCAGGAACC---CAGGCGACTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGCTGGCTGGAGTCTGTCCGGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATGAGAGACACA---C-ACGTCAGCCCTCAGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5468055 265 + 6149316 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGGTCA-----GAGCAGGAACC---CAGGCGACTGGTGAGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGCTGGCTGGAGTCTGTCCGGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATGAGAGACACA---C-ACGGCAGCCCTCAGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4700932 257 - 5823884 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGTGCCCCCCAAAATGCTGGCAGGAGTGGGGC--------------TCCTGTGAG-------------------------CCCCCTCCCTCCAGAGGGCAGTCCGCTGTC-----CAGGTCA-----GAGCAGGAACC---CAGGC--------AGCTGGTGTTGTGGGCGCAGCAGAGCCCAGGCTGGCTGGAGTCTGTCTAGGGGCCACAGGTGG---CTC---CCCACCTCTCCTTGGCGGGA-CCCACAC---G------CACACAGGCCCAGATAAGAGACACA---C-ACGTCAGCCCTCAGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57408387 266 + 159171411 CCCTCTTTGCTC-----C-----------TTCTG---CAGCCCCAGAGGGA-CCCCCAAAATGCTGGCCAGAGTGAGG-----------------CTGTGAG--------------------------ACCCTCCCTCCAGAGGGCAGTCGGCCGTC-----CAGGTCAGGATTGAGCAGGAGCC---CAGGCGGTGGGTGAGCTGGTGCTGTGGT-GCAGCAGAGCTCAGACTGGCCCAAGTCTGTCCAGGGGCCACAGCCGG---CTC---CACAGCCCTCCTTGAGGAGACCCCACAC---G------CACACAAACCCGGGTCAGAGACACA---C-ACGTCAGCCCTCAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15529593 224 + 16356641 C---CTTTGTTC------------------TCTG---CA------------------AAGATGCTG---------------------------------------------------------------CCCTCCCTCCAGAGGGCAGCCGGCCGTC-----CAGGGCAGGACTGAGCA-GAGCC---CAGGCGGCGGGCGAGCTGGTGCTGTGGTCGCAGCAGAGCTCAGACCGACCCAAGTCCGTTCGGAGGCCGCAGCCGG---CTC---CACAGCCCTCCTCGACGGGACCCCACAC---G------CACACAAGCCCGGGTCAGAGACACA---C-ACGTCAGCCCTCAGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 375987 266 + 1231380 C-CTCTTTGTTC-----C-----------CTCTA---CAGCCCCAGAGGGA-CCCCGAAGATGCTGGTCAGAGTGGAG-----------------CTGTGAG--------------------------ACCTTCCCTCCAGAGGGCAGTCGGCCGTC-----CCGGTCAGGACTGAGCAGGTGCC---CAGGTGGCGGGTGAGCTGGTGCTATGGGGGCAGCAGAGCTCAGACTGGCCCAAGTCCGTCCGGGGGCCACAGCCGG---CTC---CACGGCCCTCCTCGACGGGACCCCACAC---G------CACACAAGCCCGGGTCAGAGACACA---C-ACGTCAGCCCTCAGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1937872 265 + 11732439 C-CTCTTTGTTC-----C-----------CTCTG---CAGCCCCAGAGGGA-CCCCCAA-ATGCTGGCCGGAGTGGGG-----------------CTGGGAG--------------------------ACCCTCCCTCCAAAGGGCAGTCGGCCGTC-----CAGGTCAGGACTAAGCAGGAGCC---CAGGTGGTGGGCGAGCTGGTGCTGTGGGCACAGCAGAGTTCAGACTGGCCCAAGTCCATCCGGGGGCCACAGCCGG---CTC---CACAGCCCTCCTCGATGGGACCCCACAC---G------CACACAAGCCCACGTCAGGGACACA---C-ACGTCAGCCCTCAGAG i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181102062 336 + 182113224 C-TTCTTTGCTT-----CACAGCCACAAACCCAGGGTCAGACCTAGAAGGG-CTCTGAAAATTCTGGTTTAAGACAAAACAAAACATCACAAGCCCTGTGAGCTTCTCTCTCCCTACCCTTTTTTGCCTCCCTTCCCCCAA---GCCATTCATTGTCCTTGACAGATCCACATGAAGCAGGAGCCTAGCAATCAGTTAGTCAGCTGGTGCCATGAGGGCCG----GCCCTCCACTTTTTCATCCAGCCCTGGGGCCTGGAGCAGAGTCTCTAGCACAGCCCTCTGCCTTGGGCTCCCACAC---ACACCACCACATAGG-CCAGGTTAGACACATG---TAAAACCAGCCCTCCCAG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 95402 216 + 555560 -gcccACTGTCCGCAGCC-----------TTCTG---GGGGCCCCACGCCC-CACCCCGCAGGCTG-----AGCAGGTG------------------------------------------------CACCTGCCCTGCCACAGCCAGACCACGGGG-----CCCTCCG---------------C---CAGGCTGTGGCTGAGCCCCTCCT-----CCCCACAGGGGCCCCTCGTGCCGAGGTCCCT----AGAGCACGGGTGC---CAG---C------------------A-CCCACGCCATG------GCCACCAGCCCAC-CGAGAGGTGCAGGGT-TCATCAGGC------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I e otoGar3.GL873542 22153968 380 + 22939663 I a score=3441539.000000 s hg38.chr20_KI270871v1_alt 15401 428 + 58661 -CCACATAGGAGGCCATGCCTCGAACACACAGAGCAGCAGCGCCAG------GGC-AGACAGGCGGGCGG----CAGGGCC-------------AGG-GCAGG-ACGGAGCTGTGGGACGAGGGTGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGAGGC--AGCCGGCTT-------CAGCGCCAGCCTCCT--------GGCCCC---AGGGGC--AGCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-AGCCCTG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCACTGCACCCA------CTTCCTTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGCA---GCCAGGT-CTCTCCTCCAGGACGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTTCTGGTCTATGTGGGGAGTGGCTGG s panTro5.chr20 65585236 428 + 66533130 -CCACATAGGAGGCCATGCCTCGAACACACAGAGCAGCAGCGCCAG------GGC-AGACAGGCGGGCGG----CAGGGCC-------------AGG-GCAGG-ACGGGGCTGTGGGACGAGGGTGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGAGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-AGCCCTG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCACTGCACCCA------CTTCCTTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGCA---GCCAGGT-CTCTCCTCCAGGGCGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTTCTGGTCTATGTGGGGAGTGGCTGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354446 428 + 62195757 -CCACATAGGAGGCCATGCCTCGAACACACAGAGCAGCAGCGCCAG------GGC-AGACAGGCGGGCGG----CAGGGCC-------------AGG-GCAGG-ACGGGGCTGTGGGACGAGGGTGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGAGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-AGCCCTG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCACTGCACCCA------CTTCCTTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGCA---GCCAGGT-CTCTCCTCCAGGGCGGG--TGACTGGCCCCTGGAGGAGTCATCAAGAGCTTCTGTGCAGGAAGCCCTTCTGGTCTATGTGGGGAGTGGCTGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 765003 428 - 1017659 -CCACATAGGAGGCCATGCCTCAAACACACAGAGCAGCAGCACCAG------GGC-AGACAGGCGGGCGG----CAGGGCC-------------AGG-GCAGG-ACGGGGCTGT-GGACGAGGGTGCAACAA---GGGGAGGG----------CGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGAGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGCCT---CTGCA---GACGTTTGG-------AGATGTCTTATGGCTGAG--------CATGT--GGGAGCAGA----------------------------GG-AGCCCTG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCACTGCACCCA------CTTCCTTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGCA---GCCAGGTCCTCTCCTCCAGGACAGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTTCTGGTCTATGTGGGGAGTGGCTGG i gorGor5.CYUI01015750v1 C 0 I 1 s nomLeu3.chr13 109255744 425 - 110113093 -CCACATAGGAGGCCATGCCTCGAACACACAGAGCAGCAGCGCCAG------GGC-AGACAGGCGGGCGG----CAGGGCC-------------AGG-GCAGG-ACGGGGCTATGGGACGAGGGTGCAACAA---GGGGAGGG----------GGCTGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGAGGC--AGCCGGCTT-------CAGCACCAGCCACCT--------GGCCCC---AGGGGC--AGCAGGGCCT---CTGCA---GACG-TTGG-------AAATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-AGCCCTG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCACCGCACCCA------CTTCCTTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGCG---GCCAGGT-CTCTCCTCCAGGACGGG--TGACTGGCCTCTGGAGGAGTCATCGAGGGCTTCTGTGCAGGAAG--CTTCTGGTCTATGTGGGGAGTGGCCG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91974818 428 - 92844088 -CCACACAGGAGGCCATGCCTCGAACACACAAAGCAgcagcgccag------ggc-agacaggtgggcag----catggcc-------------agg-gcagg-acagggcTGTGGGACGAGGGCGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GTCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-TGCCGGG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCATCGCACCCA------CTTCCCTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTCTCCTCCAGGATGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTCCCAGTCCATGTGGGGAGCGGCTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95622355 428 + 96509753 -CCACACAGGAGGCCATGCCTCGAACACACAAAGCAGCAGCGCCAG------GGC-AGACAGGTGGGCAG----CATGGCC-------------AGG-GCAGG-ACAGGGCTGTGGGACGAGGGCGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GTCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-TGCCGGG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCATCGCACCCA------CTTCCCTTCTGGGAATGGAGAG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTCTCCTCCAGGATGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTCCCAGTCCATGTGGGGAGCGGCTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16077810 428 - 16982598 -CCACACAGGAGGCCATGCCTCGAACACACAAAGCAgcagcgccag------ggc-agacaggtgggcag----catggcc-------------agg-gcagg-acagggcTGTGGGACGAGGGCGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GTCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CAGGT-CGGGGGCAGA----------------------------GG-TGCCAGG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCATCGCACCCA------CTTCCCTTCTGGGAATGGAGGG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTCTCCTCCAGGATGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTCCCAGTCCATGTGGGGAGCAGCTGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2921187 428 - 3785965 -CCACACAGGAGGCCATGCCTCGAACACACAAAGCAGCAGCGCCAG------GGC-AGACAGGTGGGCAG----CATGGCC-------------AGG-GCAGG-ACGGGGCTGTGGGACGAGGGCGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-TGCCAGA-------G----------------------------------ACCCATCAC-----------------TGCCCAGCATCGCACCCA------CTTCCCTTCTGGGAATGGAGGG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTCTCCTCCAGGATGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTCCCAGTTTATGTGGGGAGCGGCTGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89592790 427 - 90373283 -CCACACAGGAGGCCATGCCTCGAACACAcagagcagcagtgccag------ggc-agacaggtgggcag----catggcc-------------agg-gcagG-ACGGGGCTGT-GGACAAGGATGCAACAA---GGGGAGGG----------GGCGGC-----CCTGGGAGAGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGTGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGCCT---CTGCA---GACA-CTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-TGCCCAG-------G----------------------------------ACTCACCAC-----------------TGCCCAGCATCGCACCCA------CTTCCCTTCTGGGAATAGAGGA-TCAACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTCTCCTCCAGGATGGG--TGACTGGCCCCCGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTCCCAGTCTATGTGGGGAGCGGCTGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5468320 429 + 6149316 -CCACACAGGAGGCCATGCCTCGAACACACAAAGCAGCAGCGCCAG------GGCAAGACAGGTGGGTAG----CATGGCC-------------AGG-GCAGG-ACGGGGCTGTGGGACGAGGGCGCAACAA---GGGGAGGG----------GGCGGC-----CCTGAGAGAGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGCCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CATGT-CGGGGGCAGA----------------------------GG-TGCCGGG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCATCGCACCCA------CTTCCCTTCTGGGAATGGAGGG-TCAACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTCTCCTCCAGGATGGG--TGACTGGCCCCTGGAGGAGTCATCAAGGGCTTCTGTGCAGGAAGCCCTCCCAGTTTATGTGGGGAGCGGCTGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4701189 427 - 5823884 -CCACACAGGAGGCCATGCCTCGAACACAcagagcagcagcgccag------ggc-agacaggtgggcag----catggcc-------------agg-gcagG-ATGGGGCTGTGGGACAAGGGTGCAACAA---GGGGAGGG----------GGCAGC-----CCTGGGAGGGAGCAGAGGCTGGGGAGGGGGC--AGCCGGCTT-------CAGCGCCAGCCACCT--------GGCCCC---AGGGGC--GGCAGGGTCT---CTGCA---GACA-TTGG-------AGATGTCTTATGGCTGAG--------CAAGT-CGGGGGCAGA----------------------------GG-TGCCCGG-------G----------------------------------ACCCACCAC-----------------TGCCCAGCATTGCACCCA------CTTCCCTTCTGGGAATGGAGGA-TC-ACATTCTAA--CA--GTTCCCAGGAAGGGTG---GCCAGGT-CTGTCCTCCAGGACGGG--TGACTGGCCCCCGGAGGAGTCATCAGGGGTTTTTGTGCAGGAAGCCCTCCCGGTCTATGGGGGGAGCGGCTGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57408653 378 + 159171411 -CCACACGGGAGGTCATGCCTCAAACACACAGAGCAGCAGCACCAG------GGC-AGACAGGCAGTCGG----CAGGGCC-------------GGG-ACAGG-----------------AGGGTACAAT--------GCAGG----------GGCAGC-----CCCGGGAGAGAGCAGAG-----------------------TC-------CAGAGTCAGCCACTC--------GGCCCC---AGGGGC--AGCAGGGCCT---CTGCA---GATG-CCCG-------AGACGTC-CATGGCCGAG----------TGT-CTGGGGTAGA----------------------------GG-CGCCCTG-------G----------------------------------ACCCACCCC-----------------TGCCCAGGGCCATATCCC------CTTCCCTTCTGGGAATGGAGGG-TCAGCCTTCTAA--CA--GCTCCCAAGAAGGGCG---GCCGAGT-CTCTGCTCCAGGACG-----GAGAGGCCCC-AGAGGAGTCAG-GAGGGCGTCTGTACAAGAACCCCTCCAGGTCTGTGCAGGGAGGGGCCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15529817 342 + 16356641 -CCACACGGAAGGTCATGCCTCAAACACACAGAGCAGCAGCACCAG------GGC-AGACAGGCGGGCAG----CTGGGCC-------------GGG-ACAGG-----------------AGGGGACAAG--------GCGGG----------GGCAG-------CTGGGTGAGGGC------------------------------------------CAGCCACCC--------GGCCCC---AGGGGC--A--------------GCA---GACG-CCTG-------A--------------GCG----------TGT-CCCGGGTAGA----------------------------GG-CGCCCGG-------G----------------------------------ACCCGCCCC-----------------TGCCCAGGGTCATAG-CC------CTTTCCTTCTGGGAATGGAGGG-TCAGCCTTCTAA--CA--GCTCCTGGGAAGGGCG---GCCGGGC-CTCTGCTCCAGGACGGA--CGAGAGGCCCC-AGAGGAGTCAG-GAGGGCTTCCGTGCAGGAAACCCTCCAGGTCCGTGTGGGGAGGGGCCGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 376253 394 + 1231380 -CCACATGGGAGGTCATGCCTCGAACACACAGAGCAGCAGCACCAG------GGC-AGACAGGCGGGC---------GGCC-------------GGG-ACAGG-----------------AAGGTACAAT--------GCGGG----------GGGAGC-----CCCGGGAGAGAGCAGAGGCTGGTCCAGGGTC--AGCCAGCTT-------CAGTGCCAGCCACCC--------GGCCCC---AGGAGC--AGCAGGGCCT---CTGCA---GACG-CGGG-------AGACGTC-AATGGCTGAG----------CGTGTCGGGGTAGA----------------------------G---GCCCTG-------G----------------------------------ACCCGCCCC-----------------TGCCCAGGACCATAT-CC------CTTCCTTTCTGGGAATGGAGGG-TCAGCCTTCTAA--CA--GCTCCCGGGAAGGGCG---GCCGGGT-CTCTGCTCCAGGACGGA--CAAGAGG-CTC-GGAGGAGTCAG-AAGGGCTCCTGTGCAGGAACCCCTCCAGGTCTGTGCAGGGAGGGGCCGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1938137 404 + 11732439 -CCACACGGGAGATCATGCCTCTAACACACAGAGCAGCAGCACCAG------GGC-AGACAGGCGGGCGG----CAGGGCC-------------GGG-ACAGG-----------------AGGGTACAAT--------GCAGG----------TGAAGC-----CCCGGGAGAGAGCAGAGGCTGGTCCACGGTC--AGCCGGCTT-------CAGTGCCAGCCACCC--------GGCCCC---AGGGGC--AGCAGGGCCT---CTGCA---GACG-CCGG-------AGACGTC-AGTGGCCAAG--------CCTGT-CCGAGGTAGA----------------------------GG-CGCCCTG-------G----------------------------------ACCCGACCC-----------------TGCCCGGGGCCACACCCC------CTTCCCTTCTGGGAATGGAGGG-TCAGCCTTCTAA--CA--GCTCCTGGGAATGGTG---GCCGGGT-CTCTGCTCCAGGACGGA--CGAGAGGCCCC-GGAGGAGTCAG-GGTTCCTTCTGTGCAGGAACCCCTCCAGGTTGGTGCGGGGAGGGGCCGG i aotNan1.NW_018500483v1 C 0 I 75 s otoGar3.GL873542 22154348 392 + 22939663 -CCGCACAGGTGGCCACACCT---GCACGCATAGCAGCGGTGCCCGACAGCTGGC-AGGCAGCCAGGAAGTTCACACAGCCCCAGTTGCTTCCAGGG-GCAGTTGTGGAGACTGAGGGTGAATGTGCCAATG---GAGGGGAG----------GGCTGG-----CCTGG----TGTCAGCTGC-----AGAGGGC--TGCC--CAC-------CCATGCCAGCAGGCA--------GCTTCC---ATGGGA--GCCA-----------GCA---CACC-T------------------TATTTCTGAG--------CATGG-TGGAGGTGGA----------------------------GG-TAGCCAAGGAACCTG----------------------------------ACCAGCCCC-----------------TACCCAGAGCAGCACCC-------CATCCCTTCTGGCAGGCATGGG-CTAACATTTTGA--CCCTGTTCCCAGGAAGGCCA---------T-CTCTGCTCCAGAAAGGG--TAA----CCCCTGGAGAAATC-----GGGCCCTGGTCCAGGCA-----------------GAGGGGTGGC--- i otoGar3.GL873542 I 380 C 0 s mm10.chr2 181102398 513 + 182113224 -CCACACTGGATG-CATGCCCAGGACACACAAAGCAGCAAC-CAGG------GGC-AGACACATGG--AG----TAGGGCC-------------GTGCACATA-GCTGGTCACCCCTGAGCAGTCACAAAGGATTGGGGGAGG----------AGCAAC-----CCCAGGGGAGTATGGACTAATCTGAGAATAC--TGTTGGTCTCATGGTACAACTCCAGCCACACAGGTTGGAGGCTCT---GGGGGA--CATTTTCTTT---CTGAGTGTGGTG-CTGGCTGGAAAAGATG------GGCCGAGGAGAGAAGCATGA-CAGGAGAGGACACGGGTCTTCTACCTGACAGGAGACTGGG-AGCCCCG-------GGAGAGGCAGGATATTGGATGCTACTTCCACAGTTACCTGTGCCTCTGGGGTCTGGGAAGATGTCCAAGGGCCTACCCAGGAATCCTTCTATTTTGAGAGTCAAGTGCTTAATCTCCTAGTCCA--GTCCCTATAAAAGGTAGGAGACAGGT-CACAGCTCTAGAGCAAA--GGACCTATACCTG---------------------------------CTATTGGACCAGGTCAGGAAGGGCTGA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 95618 389 + 555560 GCCCCGAGGGGGGC-------AGGACAC-CAACGCAGCAG----GT------GAC-ACGTCGACGGGACT----CTCCACC-------------AGA-GTGAG----------------CAAAGTGCCACAG---GGCGAGGGACAGCCACCTGGCATCTTACTCCTGCATGTGGCC---GGTTGGGGAAGGGGCTAAGAAAGCCC-------CCTTGGTCCTCGCCT--------GGCTCCCGGAGGGGCCTGGCAGGGCCTGGCCAGGG---GTCC-CCCA-------AACTGTCC-----CGGAG-----------GC-CTGGGGCTCA----------------------------GGAAGCCAGG-------G----------------------------------GTCCGGCA------------------GGCGGGGGGTCGCTGCCC------CTGCCTCTGCCCGAGGCCCGGG-GCAG-------G--TT--GTTCCCA-----GCCA---GCCCGCC-TTCCCGCCCAGGGCCAGCCTCCCTGCCTTACGGGGAAG-----------------GCAAGCAGCTCTGCTGGGCTGTGCACAGCCATCTTGA i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I a score=536697.000000 s hg38.chr20_KI270871v1_alt 15829 78 + 58661 CCC--------CAGGCTCTGCAGGGC--------AGTGTCATCACAG------------AGCAC-AAGCCTGCCCACCC------GACAGGTAAAGGCCCTTTGTGCTGTATG s panTro5.chr20 65585664 78 + 66533130 CCC--------CAGGCTCTGCAGGGC--------AGTGTCATCACAG------------AACAC-AAGCCTGCCCACCC------GACAGGGAAAGGCCCTTTGTGCTGTATG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354874 78 + 62195757 CCC--------CAGGCTCTGCAGGGC--------AGTGTCATCACAG------------AACAC-AAGCCTGCCCACCC------GACAGGGAAAGGCCCTTTGTGCTGTATG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 765432 77 - 1017659 CCC--------CAGGCTCTGCAGGGC--------AGTGTCATCACAG------------AGCAC-AAGCCTGCCCA-CC------GACAGGGAAAGGCCCTTTGTGCTTTATG i gorGor5.CYUI01015750v1 I 1 C 0 s nomLeu3.chr13 109256169 78 - 110113093 CCC--------CAGACTCTGCAGGGC--------AGTGTCATCACAG------------AGCAC-AAGCCTGCCCATCT------GACAGGGAAAGGCCCTTTGTGCTGTATG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91975246 77 - 92844088 CCC--------CAGGCTCTGCAGGGC--------GGTGCCGTCACAG------------AGCAC-AAGCTTGCCCACCC------GACAGGGAG-GGCCCTTCGTGCTGTATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95622783 77 + 96509753 CCC--------CAGGCTCTGCAGGGC--------GGTGCCGTCACAG------------AGCAC-AAGCTTGCCCACCC------GACAGGGAG-GGCCCTTCGTGCTGTATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16078238 77 - 16982598 CCC--------CAGGCTCTGCAGGGC--------GGTGCCGTCACAG------------AGCAC-AAGCTTGCCCACCC------GACAGGGAG-GGCCCTTCGTGCTGTATG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2921615 78 - 3785965 CCC--------CAGGCTCTGCAGGGC--------GGTGCCGTCACAG------------AGCAC-AAGCTTGCCCACCC------AACAGGGAGAGGCCCTTCGTGCTGTATG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89593217 78 - 90373283 CCC--------CAGGCTCTGCAGGGC--------GGTGCTGTCACAG------------AGCAC-AAGCTTGCCCACCC------GACAGGGAGAGGCCCTTCATGCTGTACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5468749 78 + 6149316 CCC--------CAGGCTCTGCAGGGC--------GGTGCCGTCACAG------------AGCAC-AAGCTTGCCCACCC------GACAGGGAGAGGCCCTTCGTGCTGTATG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4701616 78 - 5823884 CCC--------CGGGCTCTGCAGGGC--------GGTGCCATCACAG------------AGCAC-AAGCCTGCCCGCCC------GACAGGGAGAGGTCCTTCGTGCTGTATG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409031 75 + 159171411 -CC--------CAGGCTCTGCTGGGT--------GATGCTGGCACAG------------AGCGC--CGCCTGCCCTCCT------GGCTGGAAGAGGCCCTGTGTCCTGTCT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15530159 83 + 16356641 -CCGTGTGGGGAGGGATCCGCTGGGC--------GATGCCGGCACAG------------AGCAC--CGCCTGCCCTCCT------GGCGGGGAGAGGCCCTGCGTCCTGTCT- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 376647 75 + 1231380 -CC--------CGGGCTCTGCTGGCC--------GATCTCCGCACAG------------AGCAC--CACCTGCCCTCCT------GGCTGGGAGAGGCCCTGCGTCCTGTCT- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22154740 87 + 22939663 CCC--------CACACTCTGCATGGCTTGCCCTGGATGTCATAATAG------------AGCAAGGAGCCCACTCACTC------AGCAGGGAGAAGACCCTCGAAGTGTGTG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181102911 90 + 182113224 -CC--------CA--TTTTGTAAGGC--------TATGCTGGTATGGATGTCTTCCTCCAGCAT-AAACCT---CACCCAAGCAGGGTAAGGAGGTGGCTCACCTTCTACATG i mm10.chr2 C 0 I 1 s dasNov3.JH567899 96007 31 + 555560 -CC--------C---CCTCGTGGGGC--------AGGGTCCCCACAG------------AGAG-------------------------------------------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1938541 75 + 11732439 I e canFam3.chr24 47077793 1656 + 47698779 I a score=627852.000000 s hg38.chr20_KI270871v1_alt 15907 73 + 58661 GGGGTGAGGCTTCCCATAGCAGCTCAGCGCT---------------CTCCAGTCTG----AACAAAC-------------AGCCTT---GTTTCCTGCT------------------CTCAGCAGT s panTro5.chr20 65585742 73 + 66533130 GGGGTGAGTCTTCCCATAGCAGCTCAGCGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCTT---GTTTCCTGCT------------------CTCAGCAGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61354952 73 + 62195757 GGGGTGAGGCTTCCCATAGCAGCTCAGCGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCTT---GTTTCCTGCT------------------CTCAGCAGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 765509 73 - 1017659 GGGGTGAGGCTTCCCATAGCAGCTCAGCGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCTT---GTTTCCTGCT------------------CTCAGCAGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109256247 73 - 110113093 GGGGTGAGGCTTCCCTTAGCGGCTCAGCGCC---------------CTCCCGTCTG----AACAAAC-------------AGCGCT---GTTTCCTGCT------------------CTCAGCAGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91975323 73 - 92844088 CGGGTGAGGCTTCCCATAGCGGCTCACTGCC---------------CTCCAGTTTG----AACAAAC-------------AGCCCT---TTTTCCCGCT------------------CTCAGCAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95622860 73 + 96509753 CGGGTGAGGCTTCCCATAGCGGCTCACTGCC---------------CTCCAGTTTG----AACAAAC-------------AGCCCT---TTTTCCCACT------------------CTCAGCAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16078315 73 - 16982598 GGGGTGAGGCTTCCCATAGCGGCTCACTGCC---------------CTCCAGTTTG----AACAAAC-------------AGCCCT---GTTTCCCGCT------------------CTCAGCAGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2921693 73 - 3785965 GGGGTGAGGCTTCCCATAGCGGCTCAGTGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCCT---GTTTCCCGCT------------------CTCAGCAGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89593295 73 - 90373283 GGGATGAGGCTTCCCATAGCGGCTCAGTGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCCT---GTTTCCCGCT------------------CTCAGCAGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5468827 73 + 6149316 GGGGTGAGGCTTCCCATAGCGGCTCACTGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCCT---GTTTCCCGCT------------------CTCAGCAGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4701694 73 - 5823884 GGGGTGAGGCTTCCCGTAGCGGCTCAGTGCC---------------CTCCAGTCTG----AACAAAC-------------AGCCCC---GTTTCCCGCT------------------CTCAGCAGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409106 73 + 159171411 GCAGGGAGGCTTTCCACTAAAGCTCAGCACC---------------CTCCAGTCTG----AGCAGAC-------------AGCCCC---ATTTCCCACC------------------CTCAGCAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15530242 72 + 16356641 GGGGTGAGGC-TTCCGCCGAAGCTCAGCACC---------------CTCGAGTCTG----AGCAGAC-------------AGCCCC---GTTTCCCACC------------------CTCAGCAGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 376722 72 + 1231380 GGGGTGAGGC-TTCCCCCAAAGCTCAGCACC---------------CTCCAGTCTG----AGCAGAC-------------AGCCCC---GTTTCCCACC------------------CTCAGCAGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1938616 72 + 11732439 GGGGTGAGGC-TTCCGCTGAAGCTCAGCGCC---------------CTCCAGGCTG----AGCAGAC-------------AGCCCC---GTTTCCCACC------------------CTCAGCAGT i aotNan1.NW_018500483v1 I 75 C 0 s otoGar3.GL873542 22154827 90 + 22939663 ------------------ACAGCTCTGTGCCCTAACCCCTCTCCCACTCCAGGCTATAGCCACAAACACAGCGGGGGAAGAGCCCTTAGAAGACACACT------------------GACAGGGGC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181103002 86 + 182113224 GGGGTGTGACTTCCTG-AGTAGCACAGCTAC---------------CTGCA-CATG----AACAAAG-------------A---CT---GTTTTCTGCTTCCCAAATTGGCCCTAAACACAGCAAA i mm10.chr2 I 1 C 0 s dasNov3.JH567899 96038 64 + 555560 TGGGTGACGT-CTCGGTGCCAGCTCAGCACC------------------CGAGCTG----GGCACCA-------------AGCTCC---G-GTCCCGCT------------------CCAGG---- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47077793 1656 + 47698779 I a score=1220002.000000 s hg38.chr20_KI270871v1_alt 15980 163 + 58661 GGGG------------A--------CAGGGGTGGGACGGC----CTGG-AGCCCTGGGGTTCCCCT---GT-----------GATGCCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GGAGACCCTGAGGCAGACCCCTGAGGCTAGCTGGCCCGCAGAGGCTGCCCTGTGAGCCACGGTGGGACAAGGACTGTG----G s panTro5.chr20 65585815 163 + 66533130 GGGG------------A--------CAGGGGTGGGACGGC----CTGG-AGCCTTGGGGTTCGCCT---GT-----------GATGCCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGACA-GGAGACCCTGAGGCAGACCCCTGAGGCTAGCTGTCCCGCAGAGGCTGCCCTGTGAGCCACGGTGGGACAAGGACTGTG----G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355025 163 + 62195757 GGGG------------A--------CAGGGGTGGGACGGC----CTGG-AGCCTTGGGGTTCGCCT---GT-----------GATGCCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGACA-GGAGACCCTGAGGCAGACCCCTGAGGCTAGCTGTCCCGCAGAGGCTGCCCTGTGAGCCACGGTGGGACAAGGACTGTG----G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 765582 162 - 1017659 GGGG------------A--------CAGGGGTGGGACGGC----CTGG-AGCCTTGGGGTTCCCCT---GT-----------GATGCCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GGAGACCCTGAGGCAGATCCCTGAGGCTAGCTGTCCCGCAGAGGCCG-CCTGTGAGCCACGGTGGGACAAGGACTGTG----G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109256320 163 - 110113093 GGGG------------A--------CAAGGTTGGGACGGC----CTGG-AGCCTTGGGGTTCCCCT---GC-----------GATGCCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GGAGACCCTGAGGCAGACCCCTGAGGCGAGCTGCCCCGCAGAGGCCCCCCTGTGAGCCACGGTGGGACAAGGACTGTG----G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91975396 167 - 92844088 GGGGA-------ACGCA--------CAGGGGTGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------CACACCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCCGCAGAGGCCACCCCGTGAGCCACGGTGGGACAAGGACCATG----G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95622933 167 + 96509753 GGGGA-------ACGCA--------CAGGGGTGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------GACACCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCCGCAGAGGCCACCCCGTGAGCCACGGTGGGACAAGGACCATG----G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16078388 167 - 16982598 GGGGA-------ACGCA--------CAGGGGTGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------GACACCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCCGCAGAGGCCACCCCGTGAGCCACAGTGGGACAAGGACCATG----G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2921766 167 - 3785965 GGGGA-------ACGCA--------CAGGGATGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------GACACCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCCGCAGAGGCCACCCCGTGAGCCACGGTGGGACAAGGACCATG----G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89593368 167 - 90373283 GGGGA-------ACGCA--------CAGGGGTGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------GATGCCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGGCA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCCACAGAGGCCACCCTGTGAGCCACGGTGGGACAAGGACCATG----G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5468900 167 + 6149316 GAGGA-------ACGCA--------CAGGGGTGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------GACACCAGGGCAAGACTCAGGAGAA-ACTTGAGTCCAGGACA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCCGCAGAGGCCACCCCGTGAGCCACGGTGGGACAAGGACCATG----G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4701767 167 - 5823884 GGGGA-------ACGCA--------CAGGGGTGGGACGGC----CCAG-AGCCTTGGGGTTCCCCT---GT-----------GACGCCAGGGCAAGACTCAGGAGAC-ACTTGAGTCCAGGGCA-GAAGACCCTGAAGCAGACCCCTGAGGTGAGCTG-CCTGCAGAGGTCACCCTCTGAGCCACGGTGGGACAAGGACCATG----G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409179 164 + 159171411 GGGGG-------ACACA--------CAGGGGTGGACGGGC----CAGG-AGCCTTGGGGATCCCCT---G-------------ACGCCAAGGCAAGACTCAGGAGAA-ACTTGAGTCCAAGGCA-GGAGACCCTGAGGCAG-CCCCAGAGGTGAGCTGCCCTGAAGAGGCCACCCTGTGAGCTGCAGTGGGACAAGGACAGGG----- i calJac3.chr5 C 0 I 5 s saiBol1.JH378156 15530314 142 + 16356641 -GGGG-------ACACA--------CAGGGGTGGGAGGGC----CGGG-AGCCTTGGGGTTCCCCC---G-------------ACACCGAGGCAAGACTCAGGAGAA-ACT----------------------CGAGGCAG-CCCCGGAGGTGAGCTGCCCCGAAGAGGCCGCCCTGTGAGCCGCAGTGGGACAAGGACAGGG----- i saiBol1.JH378156 C 0 I 14 s cebCap1.NW_016107870v1 376794 164 + 1231380 GGGGG-------ACACA--------CCGGGGTGGGAGGGC----CGGG-AGACTTGGGGTTCCCCC---G-------------CCGCCGAGGCAAGACTCAGGAGAA-ACTTGAGTCCAAGGCA-GGAGACCCTGAGGCAG-CCCCGGAGGTGAGCTGCCCTGAAGAGGCCGCCCTGTGTGCCGCGGTGGGACAAGGACAGGG----- i cebCap1.NW_016107870v1 C 0 I 545 s aotNan1.NW_018500483v1 1938688 167 + 11732439 GGGGG-------ACACA--------CAGGGGTGGGAGGGC----CGGG-AGCCTTTGGGTTCCCCT---G-------------ACGCCGAGGCAAGACTCAGGAGAA-ACGTGAGTCTAAGGCA-GGAGACCCTGAGGCAG-CCCC-GAGGTGAGCTGCCCCGAAGAGGCCGCCCTGTGAGCCGCAGTGGGACAAGGACGGGGCTGG- i aotNan1.NW_018500483v1 C 0 I 10 s otoGar3.GL873542 22154917 140 + 22939663 GGGGGCCAGCACACACA--------CCTGTCTGTGCTGCCCGTGCCAG-AGAC-----ATTCCCCC---G-------------GCACAGTGGAGAGACTCGGGGGG--ACTGGAGTCCAGGGAA-GGAGACCCCAAAGCC--CTCCAGAGGTGAGCTGCCCTGGAGGAACTGTCA--------------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181103088 136 + 182113224 AGGG--------ACACACCACCCAGCATAAATGGCTCTGTTCT-CTGG-ACCTTCATGCTTTCTCC---ATTGTGGTATAAAGACTCCAGGG------TCATGAGGGCACTCAGACGCTGGAAA-GGAGAGCCTAGGGCGGATGTC------------------------------------CACAGTAGGA---------------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47079449 154 + 47698779 ------------GGGTA--------CAGTGTCTGGGCGGC----TCGGCAGCCCC---GCTCCCCTCGGGT-----------GGTGGCTGGGGGTCAGGCAGAAGGG-A---GAGCCCTGGGGACGCAGCGACTGGGGCAG-CACACGCGGACGGCAGGCCCTC---GGTCCTCCCGGG---TCCGGAGGGGCAGAGCCCGAG----- i canFam3.chr24 I 1656 C 0 s dasNov3.JH567899 96102 114 + 555560 ------------------------------------------------------TGGGAGCCCGCT---GG-----------CACATCCCGTC--------GGAGGG-GCAGGGG--CAAGGCC-GTTCAGCCC--------CTCCTGCTGCCAGGAAGGCCTCGGGGCTCAGTCCAGGGAGGACGGTGGGGGGCTGCCCGG------ i dasNov3.JH567899 C 0 C 0 a score=6668956.000000 s hg38.chr20_KI270871v1_alt 16143 649 + 58661 CTGGTCTGGGGGTCCTGGCCTGGGA-GCACCCTTGGCCCCAGAT---GGG-TGCCCAGCGCCAGGGCAGGGGAAGCCCCCCATCCATCATTCC--TGCTCTGCTCACAGATGGGGCCTGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGAACGAGAC-CACG----GGGGA-CACAG----GCGGGCTGGCAAC-A-GGAAGCA-GCGGC---TGGGGGGAGG--CAGGACGAGAAGGG-TGGATGGGC-----------------------------CCTGG-GAGGG---CAGGGTTGGCACGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCTGGCCGCCCAGCATGGGGCCACGCAGGGCAG---GGGGCATAGGGATGCTCGGTGGG---CAGGGACAGTGGTCACTCTGCAGACCGGGT--GGGCCACGGGGCTCCAG---GGGCTTGCCCGGTcacagttccagacacagaactagaaccacacacacacacagGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTTGAGGAAAGTAGGGG-AAACAACAGAACAAAGAAAATTAGCACAAGGGCTGGTTCTG s panTro5.chr20 65585978 649 + 66533130 CTGGTCTGGGGGTCCTGGCCTGGGA-GCACCCTTGGCCCCAGAT---GGG-TGCCCAGCGCCAGGGCAGGGGAAGCCCCCCATCCATCATTCC--TGCTCTGCTCACAGATGGGGCCTGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGAACGAGAC-CACG----GGGGA-CACAG----ACGGGCTGGCAAC-A-GGAAGCA-GCGGC---TGGGGGGAGG--CGGGACGAGAAGGG-TGGATGGGC-----------------------------CCTGG-GAGGG---CAGGGTTGGCAGGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCAG---GGGGCGTAGGGATGCTCGGTGGG---CAGGGACAGTGGTCACTCTGCAGACCGGGT--GGGCCACGGGGCTCCAG---GGGCTTGCCCGGTcacagttccagacacagaactagaaccacacacacacacagGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTTGAGGAAAGTAGGGG-AAACAACAGAACAAAGAAAATTAGCACAAGGGCCGGTTCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355188 649 + 62195757 CTGGTCTGGGGGTCCTGGCCTGGGA-GCACCCTTGGCCCCAGAT---GGG-TGCCCAGTGCCAGGGCAGGGGAAGCCCCCCATCCATCATTCC--TGCTCTGCTCACAGATGGGGCCTGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGAACGAGAC-CACG----GGGGA-CACAG----ACGGGCTGGCAAC-A-GGAAGCA-GCGGC---TGGGGGGAGG--CGGGACGAGAAGGG-TGGATGGGC-----------------------------CCTGG-GAGGG---CAGGGTTGGCAGGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCAG---GGGGCGTAGGGATGCTCGGTGGG---CAGGGACAGTGGTCACTCTGCAGACCGGGT--GGGCCACGGGGCTCCAG---GGGCTTGCCCGGTcacagttccagacacagaactagaaccacacacacacacagGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACaaagggaaaagaacggaaa-atttcaaaaagaacgggataagaaaag---gaaaatg-aaaCAAATA---GTTGAGGAAAGTAGGGG-AAACAACAGAACAAAGAAAATTAGCACAAGGGCCGGTTCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 765744 644 - 1017659 CTAGTCTGGGGGTCCTGGCCTGGGA-GCACCCTGGGCCCCAGAT---GGGTTGCCCAGCGCCAGGGCAGGGGAAG-CCCCCATCCATCATTCC--TGCTCTGCTCACAGATGGGGCCTGTGGGGT-GGGATGGAGGCACGAG-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGAACGAGAC-CACG----GGGGA-CACAG-----CGGGCTGGCAAC-A-GGAAGCA-GCGGC---T-GGGGGAGG--CGGGATGAGAAGGG-TGGATGGGC-----------------------------CCTGG-GAGGG---CAGGGTTGGCACGTGGGCTCCAGGCAGGGGAGGGTC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCAG---GGGGCGTAGGGATGCTCGGTGGG---CAGGGACAGTGGTCACTCTGCAGACCGGGT--GGGCCACGGGGCTCCA----GGGCTTGCCCGGTcacagttccagacacagaactagaaccacacacacacacagGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACaaagggaaaagaacagaaa-atttcaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTTGAGGAAAGTAGGGG-AAAC-ACAGAACAAAGAAAATTAGCACAAGGGCCGGTTCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109256483 649 - 110113093 CTGGCCTGGGGGTCTTGGCCTGGGA-GCACCCTCTGCCCCAGAT---GGG-TGCCCAGCGCCAGAGCAGGGGAAGCCCCCCATCCATCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGACGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACGAGAC-CACG----GGGGA-CACAG----GCGGGCTGGCAAC-A-GGAAGCA-GCGGC---TGGGGGGAGG--CGGGGCGAGAAGGG-TGGATGGGC-----------------------------CCGGG-GAGGG---CTGGGTTGGCACGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCACCCAGCATGGGGCCACGCAGGGCAG---GGGGTGTAGGGATGCTCGGTGGG---TGGGGACAGCAGTCACTCTGCAGACCGGGT--GGGCCACGGGGCTCCGG---GGGCTTGCCCGGTcacagttccagacacagaacgagaaccacacacacacacagGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTTGAGGAAAGTAGGGG-AAACAACAGAACAAAGAAAATTAGCACAAGGGCTGGTTCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91975563 679 - 92844088 CCGGCCTGGAGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAT---GGG-TGCCCAGTGCCAGGGTGGGGGAAGCCCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACAAGAC-CACA----GGGGA-CACAG----GCAGGCCGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCAGGGACATGGTGAGAAGGG-TGGATGGGCCTGGGGAGGGCAGGGTTGACACATGGGCTCCAGG-GAGGG---CAGGGTTGGCATGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCA----GGGGTGCAGGGATGCTCGGTGGG---CGGGGACAGTGGTCACTCTACAGACTGGGT--GGGCTGTGGGGCTCCAG---GGGCTTGCCTGGTcacagtaccagacacagaatgagaaccacacacacacacagGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGCTACTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623100 679 + 96509753 CCGGCCTGGGGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAT---GGG-TGCCCAGTGCCAGGGTGGGGGAAGCCCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACAAGAC-CACA----GGGGA-CACAG----GCAGGCCGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCAGGGACATGGTGAGAAGGG-TGGATGGGCCTGGGGAGGGCAGGGTTGACACATGGGCTCCAGG-GAGGG---CAGGGTTGGCATGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCA----GGGGTGCAGGGATGCTCGGTGGG---CAGGGACAGTGGTCACTCTACAGACTGGGT--GGGCTGTGGGGCTCCGG---GGGCTTGCCTGGTCACAGTTCCAGACACAGAATGAGAACCACACACACACACAGGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGCTTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16078555 679 - 16982598 CCGGCCTGGGGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAT---GGG-TGCCCAGTGCCAGGGTGGGGGAAGCCCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACAAGAC-CACA----GGGGA-CACAG----GCAGGCCGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCAGGGACATGGTGAGAAGGG-TGGATGGGCCTGGGGAGGGCAGGGTTGACACATGGGCTCCAGG-GAGGG---CCGGGTTGGCATGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCA----GGGGTGCAGGGATGCTCGGTGGG---CGGGGACAGTGGTCACTCTACAGACTGGGT--GGGCTGTGGGGCTCCGG---GGGCTTGCCTGGTCACAGTTCCAGACACAGAATGAGAACCACACACACACACAGGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGCTTCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2921933 679 - 3785965 CCGACCTGGGGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAC---GGG-TGCCCAGTGCCAGGGTGGGGGAAGCCCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACAAGAC-CACA----GGGGA-CACAG----GCGGGCCGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCAGGGACATGGTGAGAAGGG-TGGATGGGCCTGGGGAGGGCAGGGTTGACACATGGGCTCCAGG-GAGGG---CAGGGTTGGCTTGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCA----GGGGTGCAGGGATGCTCGGTGGG---CGGGGACAGTGGTCACTCTACAGACTGGGT--GGGCTGTGGGGCTCCGG---GGGCTTGCCTGGTCACAGTTCCAGACACAGAATGAGAACCACACACACACACAGGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGCTTCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89593535 679 - 90373283 CCGGTCTGGGGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAT---GGG-TGCCCAGCGCCAGGGTGGGGGAAG-CCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACAAGAC-CACA----GGGGA-CACAG----GCGGGCTGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCAGGGACATGGTGAGAAGGG-TGGATGGGCCCGGGGAGGGCAGGGTTGACACATGGGCTCCAGG-GAGGG---CAGGGTTGGCATGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGCCCGCCCAGCATGGGGCCACGCAGGGCAG---GGGGTGCAGGGATGCTCGGTGGG---CGGGGGCAGTGGTCACTCTACACACCGGGT--GGGCTCTGGGGCTCCGG---GGGCTTGCCTGGTCACAGTTCCAGACACAGAATGAGAACCACACACACACACAGGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGCTTCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469067 679 + 6149316 CCGGCCTGGGGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAC---AGG-TGCCCAGTGCCAGGGTGGGGGAAGCCCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACAAGAC-CACA----AGGGA-CACAG----GCGGGCCGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCAGGGACATGGTGAGAAGGG-TGGATGGGCCTGGGGAGGGCAGGGTTGACACATGGGCTCCAGG-GAGGG---CAGGGTTGGCATGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACGCAGGGCA----GGGGTGCAGGGATGCTCAGTGGG---CGGGGACAGTGGTCACTCTACAGACTGGGT--GGGCTGTGGGGCTCCGG---GGGCTTGCCTGGTCACAGTTCCAGACACAGAATGAGAACCACACACACACACAGGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGCTTCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4701934 676 - 5823884 CCGGCCTGGGGGTCCTGGCCTGGGA-GCACCTTTGGCCCCAGAT---GGG-TGCCCAGCGCCAGGGTGGGGGAAG-CCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCGTGGGGTGGGGATGGAGGCACGAG-GGGA-------------GCCAGGCCGGAAGCAGGAC--AGGACGAGAC-CACA----GGGGA-CACAG----GCGGGCCGGCAAC-A-GGAAGCA-GCGGC---TGGGGGCGGGGACACGGTGAGAAGGG-TGGATGGGCCCGGGGAGGGCAGGGTTGGCACATGGGCTCCAGG-GAGGG---CAGGGTTGGCATGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGATCGGGCCGCCCAGCATGGGGCCACACAGGGCA----GGGGTGCAGGGATGCTCAGTGGG---CGGGGGCAGTAGTCACTCTACAGACCGGGT--GGGCCGTGGGGCTCCGG---GGGCTTGCCTGGTCACAGTTCCAGACACAGAATGAGAAC--CACACACACACAGGGCTTCTG--TCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAAC-TTTCAAGTGTT-------TCCACACA--CACAAAGGGAAAAGAACGGAAA-ATTTCaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCGAGGAAAGTAGGGG-AAACAATAGAACAAAGAAAATTAGCACAAGGGCTGGTTCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409348 632 + 159171411 -----CTGGGAGTCCTGGCCTGGGA-CCACCCTTGGCCCCAGAC---AGG-TGCCAAGCGCCAGAGTGGGGAAG--TCCCCATTCACCATTCC--TGCTCTGCTCACAGATGGGGCCCATGGGGAGGGAATGGAGGCAGGAA-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGGACGAGGC-CACA----GAGGA-CACAG----GC-AGCCAGCAGC-A-GGAAGCA-CCAGTGGTGGGGGGCAGG---------AGAAGAG-TGGACAGGC-----------------------------CAGGGTGGGGG---CAGGGTTGGCACATGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGAAGAGGCC-TCCAGCATGGGGCCACGAGGGGCA-----GGGTGCAGGGACACTTGGTGGAGGTGGGGGGCAGCGGTCACTCTGCAGACCGGGT---GGCCACAGGGCTCGAG---GGCCTCGTCCCGTCACAGTCCCAG--ACAGAATGAGAACCACACACA--------GCTGCTG-CCCCATGCATGTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAGCTTTTCAAGTGTT----ACACACACACA--CACAAAGGGAAAAGAACAAAAA-GTTTCAAAAAGAACGGGATAAGAAAAA---GAAAATG-AAACAAATA---GTCAAGGAGAGGAGGGG-AAACAACAGAATGAAGAAAATTAGCACAAAGGCCGGTTCTG i calJac3.chr5 I 5 C 0 s saiBol1.JH378156 15530470 621 + 16356641 CTGGTCTGGGGGTCCTGGCCCGGGA-CCACCCTTGGCCCCAGAC---GGG-TGCCAAGCGCCAGAGCGGGGAAG--CCCCCATCCGCCATTCC--TGCTCTGCTCACAGATGGGGCCCGGGGGGAGGGGGCAGAGGCAGGAG-GGGA-------------GCCAGGCCAGAAGCAGAAC--AGGACGAGGC-CACG----GAGGA-CACAG----GC-GGCCAGCAAC-A-GGAAGCA-GCGGAGG-GGAGGGCAGG---------AGAAGAG-CGAACGGGC-----------------------------CGGGG----------GGGTTTGGCACGTGGGCTCCAGGCAGGGG-GGGCC-CAGGGCGAAGGGGCC-TCCAGCATGGGGCCAC-AGGGGCA-----GGGTGCAGGGACGCTTGGTGCGG--TGGGGGCGGCGGCCACTCTGCAGACCGGGT---GGCCACAGGGCTGGAGGGAGGCCTCACCCCGCCACAGTCCCAG--ACAGAACGA-AACCACACACA--------GCTGCCG-CCCCATGCATGTCCTACCTGGAGGCCCCGTAGGTCTGAGTTTGGGAGC-TTTCAAGGGTT-----TACACACACA--CACAAAGGGGAAAGAACAGAAC-ATTTCAAAAAGAACGGGGTCAGAA-------AAAATG-AATCAAACA---GTCGAGGAGAGGAGGGG-GAACAACAGAACAGAGAAGATCAGCGCGAGGCCCGGTTCCG i saiBol1.JH378156 I 14 C 0 s cebCap1.NW_016107870v1 377503 631 + 1231380 CTGGTCTGGGGGTCCTGGCCTGGGA-CCACCCTTGGCCCCAGAC---AGG-TGCCAAGCACCAGAGCGGGGAAG--CCCCCATCCACCATTCT--TGCTCTGCTCACAGATGGGGCCCATGGGAAGGGGACAGAGGCAGGAG-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGGACGAGGC-CACG----GAGGA-CACAG----GA-GGCCAGCAAC-A-GGAAGCA-GTGGGAAGGAGGGGCAGG---------AGAAGAG-TGGACAGGC-----------------------------TGGGGAGGG------GGGGCTGGCACGTGGGCTCCAGGCAGGGGAGGGCC-CAGGGTGAAGGGGCC-TCCAGCATGGGGCCACGAGGGGCA-----GGGTGCAGGGACCCTTGGTGGGGAGTGGGGGCGGCGGTCACTCTGCACACTGGGT---GGCCGCAGGGCTCGAG---GGCCTCATCCCGTCACAGTCCCAG--ACAGAACGAGAACCACACACA--------TCTGCTG-CCCCATGCATGTCCTACCTGGAGGCCCCGTAGGTTTGACTTTGCGAGC-TTTCAAGTGTT-----TACACACACA--CACaaagggaaaagaacaaaaa-atttcaaaaagaacgggataagaaaaa---gaaaatg-aaaCAAATA---GTCAAGGAGAGGAGGGG--AACAACAGAACAAAGAAAATTAGCGCAAGGGCCGGTTCTG i cebCap1.NW_016107870v1 I 545 I 97 s aotNan1.NW_018500483v1 1938865 630 + 11732439 CTGGTCTGGGGGTTCTGGCCTGGGA-CCACCCTTGGCCCCAGAC---AGG-TGCCAAGTGCCAGAGCAGGGAAG--CCCCCATCCACCATTCC--TGCTCTGCTCACAGATGGGGCCCATGGGGAGGGGACGGAGGTAGGAG-GGGA-------------GCCAGGCCAGAAGCAGGAC--AGGACGAGGC-CACG----GAGGA-CACAG----GC-GGCCAGCAAC-A-GGAAGCA-TCGGGGAGGGGGGGCAG-----------GAAGAG-TGGACGGGC-----------------------------CGGGG-GGGAG---CAGGGTTGGCACATGGGCTCCAGGCAGGCGAGGGCC-CAGGGTGAAGGGTCC-TCCAGCATGGGGCCACGAGGGGCA-----GGGTGCAGGGATGCTTGGTGGGGGTGGGGGGCGGCGTTCACTCTGCAGACCGGGT---GGCCACAGGGCTCGAG---GGCCTGATCCCGTCACAGTCCCAG--ACAGAACGAGAACCACACACA--------GCTGCTG-CCCCATGCATGTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGCGAGC-TTTCAAGTGTT-----TACGCACACA--CACAAAGGGAAAAGATCAAAAA-ATTTCAAAAAGAACGGGATAAGAAAAA----GAAATG-AAACAGACA---GTCAAGGAGAGGAGGGA--GACAACAGAACGAGGAGAATTAGCACAGGGGCCGGTTCTG i aotNan1.NW_018500483v1 I 10 C 0 s otoGar3.GL873542 22155057 645 + 22939663 --------------CTAGCTGGACA-GTACCCGTAGCCCAGGAT----GG-CGCCCTGTGCCACAGTGGACACA--CCCATGTCTGCCACGTC--AGCTGTGCTCACAGGTGGGGGCCGTGAGCCAGGAATGGGGTCACAGGTAGGG-------------ACAAGGCAGGAAGCAGGAC--AGGAGCAGAA-GACAACCCAAGGA-CAAAC-------GACCCACAGCAA-GGAAGCA-GCAGC---TAAGGA-AGGAGGAGGGCGAGAAGAGCCGGACAGGG-------ACACAGGAGGGAAGAGAGGGGTTCAGA-GAGGAAGCTTGGGCCGGCACGGGGGCTCCAGGCAGGGTGGGGCCACAGGGTGACAAGGCC---TAAC----GACCACACAGCACAGCAAGAGGTGCAGGGCTgctgggtgggg--cgggg----------ctctgcggggtgggc---gggggcggggctggggccgggGCCTGCCCG---ACACTGCCCCACACAGAACAAGAACCACACACACGC------TTTCTG--CCCATGCATTTCCTACCTGGAGGCCCCGTAGGTTTGAGTTTGTGAGC-TTTCAAGGGTT-----TTCACACACA--CACAAAGGGAAAAGAATGGAAATATTTTTaaaagaacaggttaaggaaaa---gaaaatgaaaaaaaaga---gccaaggaaagtggggg-aaacaacagaacaaagaaaaTTAGCACAGGGTCAACCTA-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181103224 603 + 182113224 ------------TTCTAGTCTGGGATGTGCTCCTGGTCCTAAACACAGAT-CCCTCAGAAACACAGTTAGT-----CCCACGACCGACA----------CTGCTCATAAGTAGAGGCAGGGTTAGGGAACCACAGCTGTAAG------------------ACATGGCAGGAAGCAGGCCAGAGAACAAGACACACT----GAGGA-CAAGG----G--ATCCAGCAAC-AGGGAAGCA-GAAGC---TAAGG--AAG--CGAGTCAGAGAGGC-AAGGTGTGC------------------TCACACTGGCCCAAAG-GCACT---ACAGGTTAACACAGGGATTCCAGGCAGGAAGGGGCCATTGGGGGACAGGGTC--TGACGATGGTAGCATGAGGACTA------------------------------TAGGGCAGGTG----CTCTA------GGAT--GGGGTATGAGCTCTGGA---GGGCTTGCCCCACCCCAAACTCAGACA---GACGAGAGCTACACACA--------TCTTCCA-TCCCATGCATGTCCTACCTGGAGGCCCCATAGGTTTGAGTTTGTGAGC-TTTCAAGGGTTTCACACATACATACA--CACAAAGGGAAAAGAACCAAAT-ATTTT-AAAAGAACAGGATAAGAAAAAATGAAAAAAG-AAAAAGAAAAACGTTAAGGGAAGTAGGGGGAGACAACAGAATAAAGAAAATTAGCCCGTAGCTCAGTCCTG i mm10.chr2 C 0 I 2 s canFam3.chr24 47079603 554 + 47698779 -------------CAGCGCCAGGGG-CGAGCTGCCGGCCGAACG---GGG-AGCCCCCGGCTGGGGAGGCCGAAGCCCCGTGTCCAGCGGCTCTGTGCCCTGCACAC----GGGGCCTGTGGGGGGGCGGGGGGGCAGGGCA-GGGACGCGGCTACTGAGACAAGGCAGGAAGCAGGACGCGGGACG-GAC-AACG----AGGGAGGACAG----AGGATCCAGCCGG-G-AGAAGCA-GCGGA---CAGGGGAGGG---------------G-CGG-----------------------------------TCGGA-GAGGG-------------AGCCGGGCTCCAGGCAGG-GAGGCCG-CGGGG-----------------------------AGAGCA------------------------GGG---CGGTGCCTGTA-----CCCCCAGAccgggcccggggccgggggctcggg---gggc--ACCCCGGACCAGCCCCAGACACAACAC---AACCACAC---CGTACACGCTGTCCA-TCCCATGCATCTCCTACCTGGAGGCCCCATAAATGTGAGTTTGCGAGC-TTTCAGGGGTT-------TCCACACACTCTCAGAGTGAAAAGAACGGAAA-TTTT--AAAAGAGCGGGATAATAAACA---GAAAATG-ACCCAAATG---GTCGAGGAAAGTGGGGG-AAACAACAAAACAAAGAAAATTAGCACGAGGGTCAG----- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 96216 479 + 555560 --------------CCCGCCTGGGG-CGTCC----------------AGG-TGCCC---------------------------------------T----------CAGGTGGGG---GCGGGAAGG----AGAAGCAGGAG-GAGA-------------GCAAGGAC---CCTTGGAC--AAACCGAGCA-CAGG----AAGGG-AGCGGCACTGCGGGGGGTCAGG-G-GGGGGCACGAGGA---AGGGGGCGGG------------GTGG-GCGAGGGGC-----------------------------TCGCA-GTGGG---CCCGG--GGCACTTGGGCTCCAGGCAGGGGCGGCCG-TGGGGCAA---------------------------GGACA-----------------GCCCAGGGGG---CGGCGCCGG------CTCTGCTGGCCAGAG-------GTGGGGGCAGGG---GGCCCCGC--------------------------AGAAGTCACCACA-----GCGGCTCCGGGTCGCGAGCATCTCCTACCTGGAGGCCCCGTACGTTTGAGTTTGCGAGCTTTTCAAGGGTT-----TTCACACACA--CACAaagggaaaagaaaggaaa-ttgtaaaaaagaacgggataagaaagg---aaaatga-aaaaaaaaa---gtcaaggaaagt-gggg-aaacaacagaacaaagaaaaTTAGCACGCAGGTCACCCCTT i dasNov3.JH567899 C 0 C 0 a score=32125.000000 s hg38.chr20_KI270871v1_alt 16792 8 + 58661 -TCCCTGCC---- s panTro5.chr20 65586627 8 + 66533130 -TCCCCGCC---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355837 8 + 62195757 -TCCCCGCC---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766388 7 - 1017659 -TCCC-GCC---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257132 8 - 110113093 -TCCCCGCC---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976242 8 - 92844088 -TCCCCGCC---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623779 8 + 96509753 -TCCCCGCC---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079234 8 - 16982598 -TCCCCGCC---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922612 8 - 3785965 -TCCCCGCC---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594214 8 - 90373283 -TCCCCGCC---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469746 8 + 6149316 -TCCCCGCC---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702610 8 - 5823884 -TCCCCGCC---- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409980 7 + 159171411 --CCCTGCC---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531091 2 + 16356641 --CC--------- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1939495 8 + 11732439 -CCCCCGCC---- i aotNan1.NW_018500483v1 C 0 I 95 s otoGar3.GL873542 22155702 8 + 22939663 -TCCCTGAC---- i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181103829 8 + 182113224 -TCAATGCC---- i mm10.chr2 I 2 C 0 s canFam3.chr24 47080157 6 + 47698779 ---CCCGAA---- i canFam3.chr24 C 0 I 1 s dasNov3.JH567899 96695 13 + 555560 GTCCTGGAGACCC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 378134 97 + 1231380 I a score=12472.000000 s hg38.chr20_KI270871v1_alt 16800 3 + 58661 CTG-- s panTro5.chr20 65586635 3 + 66533130 CAG-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355845 3 + 62195757 CAG-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766395 3 - 1017659 CTG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257140 3 - 110113093 CTG-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976250 3 - 92844088 CTG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623787 3 + 96509753 CTG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079242 3 - 16982598 CTG-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922620 3 - 3785965 CTG-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594222 3 - 90373283 CTG-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469754 3 + 6149316 CTG-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702618 3 - 5823884 CTG-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409987 3 + 159171411 GGG-- i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22155711 3 + 22939663 TTG-- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181103837 3 + 182113224 CTG-- i mm10.chr2 C 0 I 396 s canFam3.chr24 47080164 3 + 47698779 CAG-- i canFam3.chr24 I 1 C 0 s dasNov3.JH567899 96708 3 + 555560 --GGG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1939503 95 + 11732439 I e cebCap1.NW_016107870v1 378134 97 + 1231380 I e saiBol1.JH378156 15531093 0 + 16356641 C a score=831821.000000 s hg38.chr20_KI270871v1_alt 16803 130 + 58661 GGCTGAGAGAGGTCACTTTGCAG------------A-AACAAGGG--CAT----GGCCGACATTCCCAGGAAAGACAAGCAGGGCCA-GGCTCCTA-----AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTTGGGGC s panTro5.chr20 65586638 130 + 66533130 GGCTGAGAGAGGTCACTTTGCAG------------A-AACAAGGG--CAT----GGCCGACATTCCCAGGAAAGACAAGCAGGGCCA-GGCTCCTA-----AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTTGGGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355848 130 + 62195757 GGCTGAGAGAGGTCACTTTGCAG------------A-AACAAGGG--CAT----GGCCGACATTCCCAGGAAAGACAAGCAGGGCCA-GGCTCCTA-----AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTTGGGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766398 127 - 1017659 GGCTGAGAGAGGTCACTTTGCAG------------A-AACAAGGG--CAT----GGCCGACATT-CCAGGAAAGACAAGCAGGGCCA-GGCTCCT------AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGA--GGGTTGGGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257143 129 - 110113093 GGCTGAGAGAGGCCATTTTGCAG------------A-AACAAGGG--CAT----GGCCGACATTCCCA-GAAAGACAGGCAGGGCCA-GGCTCCTA-----AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTTGGGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976253 130 - 92844088 GGCTGAGAGAGGCCGCTTTGCAG------------A-AACAGGGG--CAT----GGCCAACATTCCCAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-TCAGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTCGGGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623790 130 + 96509753 GGCTGAGAGAGGCCGCTTTGCAG------------A-AACAGGGG--CAT----GGCCAACATTCCCAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-TCAGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTCGGGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079245 130 - 16982598 GGCTGAGAGAGGCCGCTTTGCAG------------A-AACAGGGG--CAT----GGCCAACATTCCCAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-TCAGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTCGGGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922623 130 - 3785965 GGCTGAGAGAGGCCGCTTTGTAG------------A-AACAGGGG--CAT----GGCCAACATTCCCAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTCGGGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594225 130 - 90373283 GGCTGAGAGAGGCCGCTTTGCAG------------A-AACAGGGG--CAT----GGCCAACATTCCTAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-CTGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTCGGGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469757 130 + 6149316 GGCTGAGAGAGGCCGCTTTGCAG------------A-AACAGGGG--CAT----GGCCAACATTCCCAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-TCGGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAAGGAG-GGGTCGGGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702621 130 - 5823884 GGCTGAGAGAGGCCGCTTTGCAG------------A-AACAGGGG--CAT----GGCCAACATTCCCAGGAAAGACGGGCAGGGCCA-GGCTCCTA-----AGG-TCAGGCTTCCAGGAGGTG-CAGGGGGGA-TGG-TGCTGAGGGAG-GGGTCGGGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57409990 106 + 159171411 GGCTGGGAGAGGCCGCTCCGCAG------------G-CACAGGGG--CAC----ATACCGCA-TCCCAGGAAAGAC-------------------------------GGGCTTCCAGGAGACA-CAGGGGGCAGGGG-TGCTGAGGGAG-GGGTCGGAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531093 76 + 16356641 -----------------------------------G-CGCGGGGG--CAC----AGGCCGTA-TCCCGGGACAGGC-------------------------------GGGCGTCCAGGAGGCG--AGGGGGC--GGG-TGCTGGGGGGG-G----CGGGG i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22155714 150 + 22939663 GGCTGAGAGCAGCCGTTCTGCAGTGCTCATGGCTCA-TGTGGTGG--CACTAAATGCCCACACTTCTGGGAAAGATGGGCACAGCCA-GGCCTTCA-----GGGCTCCATCTTCCAGAAGGTGCCAAGTGGGA-TGGATGCTGAGAGAGTGGACTAGGGC i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47080167 123 + 47698779 GCCCGAGTGGGGCCCAGGACGGG------------G-AGCAGGAG--CCT------TCCGCACTCCCCGAA-----GCGCGGGGCTC-GGAGCCTGCCCGCGGG-ACGGGCGCTGGGGAGG-G-CGGGGGGTC-TAC-----GCGGGAG-GGGCCGGGGC i canFam3.chr24 C 0 I 445 s dasNov3.JH567899 96711 126 + 555560 GGCTGCAGGCAGGCACTCCACAG------------AGAGCAGCGGGCCCT----GGCCTGGGTGCCGTCGAGGG---GACGGGGCAGCGGCCCCTGCCTCGGGG-CTGAGTGTCC---------CAGAGGGGG-TG--TGGGCAGGGAG-TGCCCGGGG- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939503 95 + 11732439 I e cebCap1.NW_016107870v1 378134 97 + 1231380 I a score=52380.000000 s hg38.chr20_KI270871v1_alt 16933 13 + 58661 AGACCCCAGAGGG-- s panTro5.chr20 65586768 13 + 66533130 AGACCCCAGAGGG-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355978 13 + 62195757 AGACCCCAGAGGG-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766525 13 - 1017659 AGACCCCAGAGGG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257272 13 - 110113093 AGACCCTGGAGGG-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976383 13 - 92844088 AGACCCCGGAGGG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623920 13 + 96509753 AGACCCCGGAGGG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079375 13 - 16982598 AGACCCCGGAGGG-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922753 13 - 3785965 AGACCCCGGAGGG-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594355 13 - 90373283 AGACCCCGGAGGG-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469887 13 + 6149316 AGACCCCGGAGGG-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702751 13 - 5823884 AGACCCCGGAGGA-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410096 1 + 159171411 A-------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531169 1 + 16356641 A-------------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22155864 12 + 22939663 AGGCCCAGAGGA--- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 96837 8 + 555560 -------ACAGGGAA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939503 95 + 11732439 I e cebCap1.NW_016107870v1 378134 97 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I a score=114522.000000 s hg38.chr20_KI270871v1_alt 16946 14 + 58661 CGACTGCAAACATC s panTro5.chr20 65586781 14 + 66533130 CGACTGCAAACATT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61355991 14 + 62195757 CGACTGCAAACATT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766538 14 - 1017659 CGACTGCAAACATC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257285 14 - 110113093 CGACTGCAAACATC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976396 14 - 92844088 CAACTGCAAACATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623933 14 + 96509753 CAACTGCAAACATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079388 14 - 16982598 CAACTGCAAACATC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922766 14 - 3785965 CAACTGCAAACATC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594368 14 - 90373283 CAACTGTAAACATC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469900 14 + 6149316 CAACTGCAAACATC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702764 14 - 5823884 CAACTGCAAACATC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410097 14 + 159171411 CAACAGCAAACATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531170 14 + 16356641 CGACGGCAAACACG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378231 14 + 1231380 CGACTGCAAACACA i cebCap1.NW_016107870v1 I 97 C 0 s otoGar3.GL873542 22155876 14 + 22939663 CAACTTCAATTGCT i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 96845 8 + 555560 ------CGGGCCTC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939503 95 + 11732439 I e canFam3.chr24 47080290 445 + 47698779 I a score=410364.000000 s hg38.chr20_KI270871v1_alt 16960 38 + 58661 GAGGACCGCCAAGGGCTCTGGCATCCTCCTCCCAAGTG s panTro5.chr20 65586795 38 + 66533130 GAGGACCGCCAAGGGCTCTGGAATCCTCCTCCCAAGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356005 38 + 62195757 GAGGACCGCCAAGGGCTCTGGCATCCTCCTCCCAAGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766552 38 - 1017659 GAGGACCGCCAAGGGCTCTGGCATCCTCCTCCCAAGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257299 38 - 110113093 AAGGACCGCCAACAGCTCCGGCACCCTCCTCCCAAGTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976410 38 - 92844088 AAGGACCACCAAGGGCTCTGGCACCCTCCTCCCAAGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623947 38 + 96509753 AAGGACCACCAAGGGCTCTGGCACCCTCCTCCCAAGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079402 38 - 16982598 AAGGACCACCAAGGGCTCTGGCACCCTCCTCCCAAGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922780 38 - 3785965 AAGGATCACCAAGGGCTCTGGCACCCTCCTCCCAAGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594382 38 - 90373283 AAGGACCACCAAGGGCTCTGGCACCCTCCTCCCAAGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469914 38 + 6149316 AAGGATCACCAAGGGCTCTGGCACCCTCCTCCCAAGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702778 38 - 5823884 AAGGACCACCAAGGACTCTGGCACCCTCCTCCCAAGTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410111 34 + 159171411 GAGGG----CAGGGGCTCTGGCACCCTCCTCCCAGGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531184 38 + 16356641 GAGGGCCACCAAGGGCCCTGGCACCCTCCTCCCGGGCG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378245 38 + 1231380 GAGGGCCGCCAAGGGCTCTGGCACCCTCCTCCCAGGTG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1939598 38 + 11732439 GAGGGCCGCCAAGGGCCCTGCCGCCCTCCTCTCAGGTG i aotNan1.NW_018500483v1 I 95 C 0 s otoGar3.GL873542 22155890 36 + 22939663 AAGGACCACCAAGGGCTGTAGCACCCTCCACCCAGG-- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 96853 35 + 555560 CAGGAACACCGCG---TCCTGCGCCCTCTGCCCGGGTG i dasNov3.JH567899 C 0 I 40 e mm10.chr2 181103840 396 + 182113224 I e canFam3.chr24 47080290 445 + 47698779 I a score=649137.000000 s hg38.chr20_KI270871v1_alt 16998 75 + 58661 ACACCCTGAAAAGGCAGGTAGCAACTGAGGACTGCCGCGGGTCTG-TCCACCCTGGC------CAACTCAGGATCCTCAAG-A s panTro5.chr20 65586833 75 + 66533130 ACACCCTGAAAAGGCAGGTAGCAACTGAGGACTGCCGCAGGTCTG-TCCACCCTGGC------CAACTCAGGATCCTCAAG-A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356043 75 + 62195757 ACACCCTGAAAAGGCAGGTAGCAACTGAGGACTGCCGCGGGTCTG-TCCACCCTGGC------CAACTCAGGATCCTCAAG-A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766590 74 - 1017659 ACACCCTGAAAAGGCAGGTAGCAACTGAGGACTGCCGTGGGTCTG-TCCA-CCTGGC------CAACTCAGGATCCTCAAG-A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257337 75 - 110113093 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGACCGCCATGGGTCTG-TCCACCCTCGC------CAACCCAGGATCCTCAAG-A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976448 75 - 92844088 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGATGGCCACGGGTCTG-TCCACCCTTGC------CAACTCAGGATCCTCAAG-A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95623985 75 + 96509753 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGATGGCCACGGGTCTG-TCCACCCTTGC------CAACTCAGGATCCTCAAG-A i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079440 75 - 16982598 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGATGGCCACGGGTCTG-TCCACCCTTGC------CAACTCAGGATCCTCAAG-A i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922818 75 - 3785965 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGATGGCCACAGGTCTG-TCCACCCTTGC------CAACTCAGGATCCTCAAG-A i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594420 75 - 90373283 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGATGGCCACGAGTCTG-TCCACCCTTGC------CAACTCAGGATCCTCAAG-A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5469952 75 + 6149316 ACACCCTGAAAAGCCAGGTAGCAGCTGAGGATGGCCACAGGTCTG-TCCACCCTTGC------CAACTCAGGATCCTCAAG-A i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702816 75 - 5823884 ACACCCTGAAAAGGCAGGTAGCAGCTGAGGATGGCCGCGGGTCTG-TCCACCCTTGC------CAGCTCAGGATCATCAAG-A i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410145 73 + 159171411 ACACCCTG-AAAGGCGTGTAGCAGCTGAGGATGGCCAAGGGCCTA-TCCACCCTCTC------CAACTCAGGAGCCTCAAG-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531222 72 + 16356641 ACGCCCTG-CAAGGCGGCTTGCAGCTGAGGACGGCCGCGGGTCTG-TGCACCC-CCC------CACCTCAGGAGCCTCAAG-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378283 74 + 1231380 ACACCCTG-AAAGGCAGCTTGCAGCTGAGGATGGCCAAGGGCCTA-TCCACCCTCTC------CAACTCAGGAGCCTCAAGA- i cebCap1.NW_016107870v1 C 0 I 52 s aotNan1.NW_018500483v1 1939636 73 + 11732439 ACACCCTG-AAAGGCGGGCAGCAGCTGAGGGTGGCCGAGGGCCCA-TCCACCCTCTC------CAACTCGGGAGCCTCAAG-- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22155926 78 + 22939663 --GACTTGCCCAGGAAGGAGGCAGT--GGGCCAGCCTCTGGGCTGCCCCACCATGGCTGAGGTCAGGACGGGACCCTTAAG-T i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e canFam3.chr24 47080290 445 + 47698779 I a score=527007.000000 s hg38.chr20_KI270871v1_alt 17073 62 + 58661 AGAATCCTGGGCCCCACCCC-AGCTTAGAATTCCCAGCCACACTGTGCACCTGCCCCACCCTC s panTro5.chr20 65586908 62 + 66533130 AGAATCCTGGGCCCCACCCC-AGCCTAGAATTCCCAGCCACACTGTGCACCTGCCCCACCCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356118 62 + 62195757 AGAATCCTGGGCCCCACCCC-AGCCTAGAATTCCCAGCCACACTGTGCACCTGCCCCACCCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766664 62 - 1017659 AGAATCCTGGGCCCCACCCC-AGCCTAGAATTCCCAGCCACACTGTGCACCTGCCCCACCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257412 62 - 110113093 AGAATCCTGGGCTCCACCCC-AGCCTAGAAGTCTCAGCCACGCTGTGCACCTGCCCCACCCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976523 62 - 92844088 AGAATCCTGGGCCCCACCCC-AGCCTAGAAGTCCCATCCACACTGTGCACCTGCCCCACCCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624060 62 + 96509753 AGAATCCTGGGCCCCACCCC-AGCCTAGAAGTCCCATCCACACTGTGCACCTGCCCCACCCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079515 62 - 16982598 AGAATCCTGGGCCCCACCCC-AGCCTAGAAGTCCCATCCACACTGTGCACCTGCCCCACCCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922893 62 - 3785965 AGAATCCTGGGCCCCACCCC-AGCCTAGAAGTCCCATCCATGCTGTGCACCCGCCCCACCCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594495 62 - 90373283 AGAATCCTGGGCCCCAACCC-AGCCTAGAAGTCCCATCCACGATGTGCACCTGCCCCACCCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470027 62 + 6149316 AGAATCCTGGGCCCCACCCC-AGCCTAGAAGTCCCATCCACGCTGTGCACCTGCCCCACCCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702891 62 - 5823884 AGAATCCTGGGCCCCACTCC-AGCCTAGAAGTCCCATCCACGCTGTGCACCTGCCCCACCCTA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410218 63 + 159171411 AGGACCCGGGGCCCTGCCCCAAGCCAAGAAGTCCCAGCCAACCTGTGCACCCACCCCACCCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531294 63 + 16356641 AGGACCCCGGGCCCCGCCCCAAGCCAAGAAGTGCCAGCCAAGCTGTGCACCCACCCCACCCTC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1939709 63 + 11732439 AGGACCCTGGGCCCCACCCCAAGCCAAGAAGTCCCAGCCAAGCTGTGCACCCAGCCCACCCTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22156004 34 + 22939663 -----------------------------AGTCCTAGCCAAGCCCTGTGCCCACCTCACCCTC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I a score=309107.000000 s hg38.chr20_KI270871v1_alt 17135 62 + 58661 AGGGAAGGCCCCACCCTCAGGGAAAGCCCCGCCCACAGGGAAGGCCCCACCCTCAGGGAAGG s panTro5.chr20 65586970 44 + 66533130 AGGGAAG------------------GCCCCGCCCACAGGGAAGGCCCCACCCTCAGGGAAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356180 62 + 62195757 AGGGAAGGCCCCACCCTCAGGGAAGGCCCCGCCCACAGGGAAGGCCCCACCCTCAGGGAAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766726 61 - 1017659 AGGGAAGGCCCCACACTCAGGGAAGGCCCCGCCCACAGGGAAGGCCCCA-CCTCAGGGAAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257474 62 - 110113093 AGGGAAGGCCCCACCCTCAGGGAAGGCCCCGCCCACAGGGAAGGCCCCACCCTCAGAGAAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976585 62 - 92844088 AGGGAAGGCTCTGCTCTCAGGGAAGGCTCCACCCACAGGGAAAGCTCCACCCACAGGGAAGG i rheMac8.chr10 C 0 I 58 s macFas5.chr10 95624122 62 + 96509753 AGGGAAGGCTCTGCTCTCAGGGAAGGCTCCACCCACAGGGAAAGCTCCACCCACAGGGAAGG i macFas5.chr10 C 0 I 4 s macNem1.NW_012014244v1 16079577 62 - 16982598 AGGGAAGGCTCTGCTCTCAGGGAAGGCTCCACCCACAGGGAAAGCTCCACCCTCAGGGAAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2922955 62 - 3785965 AGGGAAGGCTCTGCTCTCAGGGAAGGCTCCACCCACAGGGAAGGCCCCACCCTCAGGGAAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594557 62 - 90373283 AGGGAAGGCTCCACCCACAGGGAAGGTCCCACCCACAGGGATGACTTCACCCTCAGGGAAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470089 62 + 6149316 AGGGAAGGCTCTGCTCTCAGGGAAGGCTCCACCCACAGGGAAAGCGCCACCCTCAGGGAAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4702953 62 - 5823884 AGGAAAGGCTCTGCTCTCAGGGAAGGCTCCACCCACAGGGAAGGCTCCACCCTCAGGGAAGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=79249.000000 s hg38.chr20_KI270871v1_alt 17197 18 + 58661 CCCCACCCTCAGGGAAGG s panTro5.chr20 65587014 18 + 66533130 CCCCACCCTCAGGGAAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356242 18 + 62195757 ATCCACCCACAGAGAAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766787 18 - 1017659 CCCCACCCACAGGGAAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257536 18 - 110113093 CCCCACCCACAGGGAAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976705 18 - 92844088 CCCCACTCACAGGGAAAG i rheMac8.chr10 I 58 C 0 s macFas5.chr10 95624188 18 + 96509753 CCCCACCCACAGGAAAGG i macFas5.chr10 I 4 C 0 s macNem1.NW_012014244v1 16079639 18 - 16982598 CCCCACCCACAGGGAAGG i macNem1.NW_012014244v1 C 0 I 26 s cerAty1.NW_012001373v1 2923017 18 - 3785965 CCCTACCCACAGGGAAGG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5470151 18 + 6149316 CCCCACCCACAGGGAAGG i manLeu1.NW_012104365v1 C 0 I 40 s colAng1.NW_012114444v1 4703015 18 - 5823884 CTCCACCCACAGAGAAGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89594619 0 - 90373283 C a score=36949.000000 s hg38.chr20_KI270871v1_alt 17215 13 + 58661 CTCC------------------ACCCTCAGG s panTro5.chr20 65587032 13 + 66533130 ATCC------------------ACCCACAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356260 13 + 62195757 CTCC------------------ACCCACAGG i panPan2.chr20 C 0 T 104 s gorGor5.CYUI01015750v1 766805 13 - 1017659 CCCC------------------ACTCTCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257554 13 - 110113093 CCCC------------------ACCCACAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976723 13 - 92844088 CTCC------------------ACCCTCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624206 13 + 96509753 CTCC------------------AGGCTCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079683 31 - 16982598 CCCCACCCACAGGGAAGGCTCCAGGCTCAGG i macNem1.NW_012014244v1 I 26 C 0 s chlSab2.chr2 89594619 13 - 90373283 CTCC------------------ACCCTCAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470209 13 + 6149316 CTCC------------------AGGCTCAGG i manLeu1.NW_012104365v1 I 40 C 0 s colAng1.NW_012114444v1 4703033 13 - 5823884 CTCC------------------ACCCTCAGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e cerAty1.NW_012001373v1 2923035 0 - 3785965 C a score=12477.000000 s hg38.chr20_KI270871v1_alt 17228 6 + 58661 GTAGGA s panTro5.chr20 65587045 6 + 66533130 GAAGAC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766818 6 - 1017659 GAAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257567 6 - 110113093 GAAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976736 6 - 92844088 GAAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624219 6 + 96509753 GAAGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079714 6 - 16982598 GAAGTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923035 1 - 3785965 -----C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594632 6 - 90373283 GAAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470222 6 + 6149316 AAAGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703046 6 - 5823884 GAAGGA i colAng1.NW_012114444v1 C 0 I 4 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e panPan2.chr20 61356273 104 + 62195757 T a score=54178.000000 s hg38.chr20_KI270871v1_alt 17234 16 + 58661 TCCACCCACAGGGAAG s panTro5.chr20 65587051 16 + 66533130 TCCACCCACAGGGAAG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766824 16 - 1017659 TCCACCCACAGGGAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257573 16 - 110113093 CCCACCCACAAGATAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976742 16 - 92844088 TCCACCCTCAGGGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624225 16 + 96509753 CCCACCTACAGGGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079720 16 - 16982598 CCCACCTACAGGGAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923036 16 - 3785965 TCCACCCACAGGGAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594638 16 - 90373283 CTCACCCACAGGGAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470228 16 + 6149316 TCCACACACAGGGAGG i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703052 4 - 5823884 I e panPan2.chr20 61356273 104 + 62195757 T a score=13329.000000 s hg38.chr20_KI270871v1_alt 17250 3 + 58661 GCC s panTro5.chr20 65587067 3 + 66533130 GCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356169 3 + 62195757 GCC i panPan2.chr20 T 104 C 0 s gorGor5.CYUI01015750v1 766840 3 - 1017659 GCC i gorGor5.CYUI01015750v1 C 0 I 1 s nomLeu3.chr13 109257589 3 - 110113093 GCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976758 3 - 92844088 GCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624241 3 + 96509753 GCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079736 3 - 16982598 GCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923052 3 - 3785965 GCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594654 3 - 90373283 GCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470244 3 + 6149316 GCT i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703052 4 - 5823884 I a score=62680.000000 s hg38.chr20_KI270871v1_alt 17253 16 + 58661 CCACCCGCAGGGAAGG s panTro5.chr20 65587070 16 + 66533130 CCACCCTCAGGGAAGG i panTro5.chr20 C 0 I 36 s panPan2.chr20 61356172 16 + 62195757 CCACCCTCAGGGAAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766844 16 - 1017659 CCACCCACAGGGAAGG i gorGor5.CYUI01015750v1 I 1 I 21 s nomLeu3.chr13 109257592 16 - 110113093 CCACCCACAGGGAAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976761 16 - 92844088 CCAGGCTCAGGGAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624244 16 + 96509753 CCACTCACAGGGAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079739 16 - 16982598 CCACTCACAGGGAAAG i macNem1.NW_012014244v1 C 0 T 94 s cerAty1.NW_012001373v1 2923055 16 - 3785965 CCACCCACAGGGAAGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594657 16 - 90373283 CCACCCACAGGGATAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470247 16 + 6149316 CCACCCTCAGGGAAGG i manLeu1.NW_012104365v1 C 0 T 90 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703052 4 - 5823884 I a score=65941.000000 s hg38.chr20_KI270871v1_alt 17269 14 + 58661 CCCCA---CCCTCAGGG s panTro5.chr20 65587122 14 + 66533130 CCCCA---CCCACAGGG i panTro5.chr20 I 36 C 0 s panPan2.chr20 61356188 14 + 62195757 CCCCA---CCCTCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766881 17 - 1017659 CCTCAAGGCCCTCAGGG i gorGor5.CYUI01015750v1 I 21 C 0 s nomLeu3.chr13 109257608 14 - 110113093 CCCCA---CCCACAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976777 14 - 92844088 CTCCA---CACACAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624260 14 + 96509753 CTCCA---CCCTCAGGG i macFas5.chr10 C 0 T 90 s macNem1.NW_012014244v1 16079661 14 - 16982598 CCCCA---CCCACAGGG i macNem1.NW_012014244v1 T 94 I 4 s cerAty1.NW_012001373v1 2923071 14 - 3785965 CTCCA---CCCTCATGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594673 14 - 90373283 CTTCA---CCCTCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470173 14 + 6149316 CCCCA---CCCACAGGG i manLeu1.NW_012104365v1 T 90 C 0 s colAng1.NW_012114444v1 4703056 14 - 5823884 CCCCA---CCCACAGGG i colAng1.NW_012114444v1 I 4 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=82614.000000 s hg38.chr20_KI270871v1_alt 17283 18 + 58661 AAGGCCCCATCCACAGGG s panTro5.chr20 65587136 18 + 66533130 AAGGCCCCACCCACAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356202 18 + 62195757 AAGGCCCCGCCCACAGGG i panPan2.chr20 C 0 I 53 s gorGor5.CYUI01015750v1 766898 18 - 1017659 AAGGCCCCACCCACAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257622 18 - 110113093 AAGGCCTCACCCACAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976791 18 - 92844088 ATGACTCCACCCTCAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624184 18 + 96509753 AAGACCCCACCCACAGGA i macFas5.chr10 T 90 C 0 s macNem1.NW_012014244v1 16079679 18 - 16982598 AAGACCCCACCCACAGGG i macNem1.NW_012014244v1 I 4 C 0 s chlSab2.chr2 89594687 18 - 90373283 AAGGCCCCACCCACAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470187 18 + 6149316 AAGGCCCCACCCACAGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703070 18 - 5823884 AAGGCCCCACCCACAGGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e cerAty1.NW_012001373v1 2923085 0 - 3785965 C a score=50404.000000 s hg38.chr20_KI270871v1_alt 17301 15 + 58661 AAGGCTCCACCCTCA s panTro5.chr20 65587154 15 + 66533130 AAGGATCCACCCTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356273 15 + 62195757 AAGGCCCACTCCTCA i panPan2.chr20 I 53 C 0 s gorGor5.CYUI01015750v1 766916 15 - 1017659 AAGGCTCCATCCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257640 15 - 110113093 AAGGCCCCACCCTCA i nomLeu3.chr13 C 0 T 18 s rheMac8.chr10 91976809 15 - 92844088 AAGGCTCTACCCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624202 15 + 96509753 AAGGCTCCAGGCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079697 15 - 16982598 AAGGCTCCAGGCTCA i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89594705 15 - 90373283 ATGACTCCACCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470205 15 + 6149316 AAGGCTCCAGGCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703088 15 - 5823884 AAGGCTCCAGGCTCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e cerAty1.NW_012001373v1 2923085 0 - 3785965 C a score=73441.000000 s hg38.chr20_KI270871v1_alt 17316 24 + 58661 GGGAAGGATCCACCCACAGGGAAG s panTro5.chr20 65587169 24 + 66533130 GGGAAGGCCCCACCCTCAGGGAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356288 10 + 62195757 GGGAAGGATC-------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766931 24 - 1017659 GGGAAGGCTCCACCCACAGGGAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257637 24 - 110113093 GGGAAGGCCCCACCCTCAGAGAAG i nomLeu3.chr13 T 18 C 0 s rheMac8.chr10 91976824 24 - 92844088 GGGAAAGCTCCCCCCTCAGGGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624217 24 + 96509753 GGGAAGTTCCCACCTACAGGGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079712 24 - 16982598 GGGAAGTTCCCACCTACAGGGAAG i macNem1.NW_012014244v1 C 0 T 76 s cerAty1.NW_012001373v1 2923085 7 - 3785965 -----------------AAGGAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594720 24 - 90373283 GGGAAGGCTCCACCCACAGGGAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470220 24 + 6149316 GGAAAGGCTCCACACACAGGGAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703103 24 - 5823884 GGGAAGTCTCCACACACAGGGAGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=4745.000000 s hg38.chr20_KI270871v1_alt 17340 2 + 58661 AC s panTro5.chr20 65587193 2 + 66533130 GC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766955 2 - 1017659 GC i gorGor5.CYUI01015750v1 C 0 T 114 s nomLeu3.chr13 109257661 2 - 110113093 GC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976848 2 - 92844088 TT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624241 2 + 96509753 GC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079660 2 - 16982598 AC i macNem1.NW_012014244v1 T 76 C 0 s cerAty1.NW_012001373v1 2923092 2 - 3785965 GC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594744 2 - 90373283 AC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470244 2 + 6149316 GC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703127 2 - 5823884 GC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e panPan2.chr20 61356298 0 + 62195757 C a score=160698.000000 s hg38.chr20_KI270871v1_alt 17342 36 + 58661 TCCACCCACAGGGAAGG----C-CCCACCCACAG----GGAAGGC s panTro5.chr20 65587195 36 + 66533130 CCCACCCACAGGGAAGG----C-CCCACCCTCTG----GGAAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356298 36 + 62195757 -CCACCCACGGGGAAGG----CTCCCACCCACAG----GGAAGGC i panPan2.chr20 C 0 T 127 s gorGor5.CYUI01015750v1 766843 35 - 1017659 TCCACCCACAGGGAAGG------CCCACCCACAG----GGAAGGC i gorGor5.CYUI01015750v1 T 114 C 0 s nomLeu3.chr13 109257663 36 - 110113093 CCCACCCACAGGGAAGG----C-CCCACCCACAG----GGAAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976850 36 - 92844088 CCCACCCACAGGGAAGG----C-TCCACCCACAG----GGAAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624243 40 + 96509753 CCCACTCACAGGGAAAG----C-TCCACCCTCAGGGAAGGAAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079662 40 - 16982598 CCCACCCACAGGGAAGGAAGAC-CCCACCCACAG----GGAAGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923094 36 - 3785965 TCCACCCTCTGGGAAGG----C-CCCACCCACAG----GGAAGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594746 33 - 90373283 TCCAGGCTCAGGGAAGG----C-CCCACCCTCAG----GGAA--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470246 36 + 6149316 TCCACCCTCAGGGAAGG----C-CCCACCCACAG----GTAAGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703129 36 - 5823884 TCCACCCTCAGGGAAGT----C-TCCACCCTCAG----GGAAGGC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=21189.000000 s hg38.chr20_KI270871v1_alt 17378 8 + 58661 CCCACCCT s panTro5.chr20 65587231 8 + 66533130 TCCACCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356207 8 + 62195757 CCCGCCCA i panPan2.chr20 T 127 C 0 s gorGor5.CYUI01015750v1 766878 6 - 1017659 --CACCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257699 8 - 110113093 CGCACCCT i nomLeu3.chr13 C 0 T 72 s rheMac8.chr10 91976886 8 - 92844088 CCCAACCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624283 8 + 96509753 TCCACCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079702 8 - 16982598 TCCAGGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923130 8 - 3785965 CCCACCCT i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5470282 8 + 6149316 CCCACCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703165 8 - 5823884 TCCACCTT i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89594779 0 - 90373283 C a score=237296.000000 s hg38.chr20_KI270871v1_alt 17386 56 + 58661 CAG----GGAAGGCCCCACCCTCAGGGAAGGATCCACCCA------------------------------------CAGGGAAGGCCCCACCCTCA s panTro5.chr20 65587239 92 + 66533130 CAG----GGAAGCCTCCACCCTCAGGGAAGGATCCACCCACAGGGAAGGCTCCAGCCTCTGGGAAGGCCCCACCCTCAGGGAAGGCCCCACCCACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356215 56 + 62195757 CAG----GGAAGGCCCCACCCTCAGGGAAGGATCCACCCA------------------------------------CAGAGAAGACTCCACCCACA i panPan2.chr20 C 0 T 72 s gorGor5.CYUI01015750v1 766884 47 - 1017659 CAA----GG---------CCCTCAGGGAAGGCCCCACCCA------------------------------------CAGGGAAGGCTCCATCCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257635 56 - 110113093 CAG----GGAAGGCCCCACCCTCAGAGAAGGCCCCACCCA------------------------------------CAGGGAAGGCCCCACCCACA i nomLeu3.chr13 T 72 C 0 s rheMac8.chr10 91976894 56 - 92844088 CAG----GGAAGGCTCCACCCTCAGGGAAGTTCCCACCCA------------------------------------CAGGGAAGGCCCCACCCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624291 56 + 96509753 CAG----GGAAGGCTCCAGGCTCAGGGAAGACTCCACACA------------------------------------CAGGGATGACTCCACCCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079710 56 - 16982598 CAG----GGAAGTTCCCACCTACAGGGAAGGCCCCACTCA------------------------------------CAGGGAAAGCTCCACCCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923138 60 - 3785965 CAGGGAAGGAAGGCCCCACCCACAGGGAAGGCCCCACCCA------------------------------------CAGGGAAGGCTCCAGGCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594779 53 - 90373283 -------GGAAGGCTCCACCCTCAGGGAAGGCTCCACCCA------------------------------------CAGGGAAGGCCCCACCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470290 56 + 6149316 CAG----GGATGACTCCACCCTCAGGGAAGGCTCCACCCA------------------------------------CAGGGAAAGCTCCACTCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703173 56 - 5823884 CAG----GGAAGTCCCCACCCACAGGGAAGGCCCCACTCA------------------------------------CAGGGATGACTCCACCCTCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=6600.000000 s hg38.chr20_KI270871v1_alt 17442 1 + 58661 G s panTro5.chr20 65587331 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356199 1 + 62195757 G i panPan2.chr20 T 72 C 0 s gorGor5.CYUI01015750v1 766931 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257691 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976950 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624347 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079766 1 - 16982598 G i macNem1.NW_012014244v1 C 0 I 4 s cerAty1.NW_012001373v1 2923198 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594832 1 - 90373283 G i chlSab2.chr2 C 0 I 4 s manLeu1.NW_012104365v1 5470346 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703229 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=49024.000000 s hg38.chr20_KI270871v1_alt 17443 18 + 58661 GGAAGGCCACACCCACAG s panTro5.chr20 65587332 18 + 66533130 GGAAGGCTCCACCCTCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356200 18 + 62195757 GGAAGGCCCCGCCCACAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766932 18 - 1017659 GGAAGGCTCCACCCACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257692 16 - 110113093 GGAAGGCCGCACC--CTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976951 18 - 92844088 GGAAGGCTCCACCCTCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624348 18 + 96509753 GGAAGGCTCTACCCACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079771 18 - 16982598 GGAAGGCTCCACCCTCAG i macNem1.NW_012014244v1 I 4 C 0 s cerAty1.NW_012001373v1 2923199 18 - 3785965 GAAAGGCTCCACACACAG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5470347 4 + 6149316 GGAA-------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703230 18 - 5823884 GGAAGGCTCCACCCACAG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89594833 4 - 90373283 I a score=83863.000000 s hg38.chr20_KI270871v1_alt 17461 16 + 58661 GGAAGGCTCCACCCTC s panTro5.chr20 65587350 16 + 66533130 GGAAGGCTCCACCCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356218 16 + 62195757 GGAAGGCCCCACCCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766950 16 - 1017659 GGAAGGCTCCACCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257708 16 - 110113093 AGAAGGCCCCACCCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976969 16 - 92844088 GGAAGGCCCCACCCTC i rheMac8.chr10 C 0 T 144 s macFas5.chr10 95624366 16 + 96509753 GGAAAGCTCCACCCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079789 16 - 16982598 GGAAGGCTCCAGGCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923217 16 - 3785965 GGAGGGCTCCACCCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594837 16 - 90373283 GGAAGGCTCCACCCTC i chlSab2.chr2 I 4 C 0 s manLeu1.NW_012104365v1 5470351 16 + 6149316 GGAAGGCTCCACCCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703248 16 - 5823884 GGAAGGCTCCACACAC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=32892.000000 s hg38.chr20_KI270871v1_alt 17477 10 + 58661 TGGGAAGGAT s panTro5.chr20 65587366 10 + 66533130 AGGGAAGGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356234 10 + 62195757 AGGGAAGGAT i panPan2.chr20 C 0 I 54 s gorGor5.CYUI01015750v1 766966 9 - 1017659 TGGGAAGCC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257724 10 - 110113093 AGGGAAGGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976841 10 - 92844088 AGGGAAGTTC i rheMac8.chr10 T 144 C 0 s macFas5.chr10 95624382 10 + 96509753 AGGGAAGTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079805 10 - 16982598 AGGGAAGACT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923233 10 - 3785965 AGGGAAGGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594853 10 - 90373283 AGGGAAGGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470367 10 + 6149316 AGGGAAGGTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703264 10 - 5823884 AGGGAGGGCT i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=112172.000000 s hg38.chr20_KI270871v1_alt 17487 23 + 58661 CCACCCACAG----GGAAGGCT-CCACC s panTro5.chr20 65587376 23 + 66533130 CCACCCTCAG----GGAAGGCT-CCACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356298 24 + 62195757 CCACCCACGG----GGAAGGCTCCCACC i panPan2.chr20 I 54 C 0 s gorGor5.CYUI01015750v1 766975 23 - 1017659 CCACCCTCAG----GGAAGGCT-CCACC i gorGor5.CYUI01015750v1 C 0 I 129 s nomLeu3.chr13 109257734 23 - 110113093 CCACTCACAG----GGAAGGCC-CCACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976851 23 - 92844088 CCACCCACAG----GGAAGGCT-CCACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624392 23 + 96509753 CCACCCACAG----GGAAGGCT-CCACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079815 23 - 16982598 CCACACACAG----GGATGACT-CCACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923243 23 - 3785965 CTACCCACAG----GGAAGGCT-CCACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594863 27 - 90373283 CCACCCTCAGGGAAGGAAGACC-CCACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470377 23 + 6149316 CCACCCACAG----GGATGACT-CCATC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703274 23 - 5823884 CCACCCTCAG----GGAAGGCT-CCACC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=90060.000000 s hg38.chr20_KI270871v1_alt 17510 22 + 58661 CACAGGGAAGGATCCACCCACA s panTro5.chr20 65587399 22 + 66533130 CACAGGGAAGGCTCCACCCTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356322 22 + 62195757 CACAGGGAAGGCTCCACCCACA i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109257757 22 - 110113093 CTCAGAGAAGGCCCCACCCACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976874 22 - 92844088 CACAGGGAAGGCCCCAACCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624415 22 + 96509753 CACAGGGAAGGCCCCACCCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079838 22 - 16982598 CTCAGGGAAGGCTCTACCCACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923266 22 - 3785965 CACAGGGAAGGCTCCACCCACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594890 22 - 90373283 CACAGGGAAGGCTCCACCCAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470400 22 + 6149316 CTCAGGGAAGGCTCCACCCACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703297 22 - 5823884 TTCAGGGAAGGCCCCACCCACA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e gorGor5.CYUI01015750v1 766998 129 - 1017659 I a score=35982.000000 s hg38.chr20_KI270871v1_alt 17532 9 + 58661 GGGAAGGCC s panTro5.chr20 65587421 9 + 66533130 GGGAAGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356344 9 + 62195757 GGGAAGGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767127 9 - 1017659 GGGAAGGCC i gorGor5.CYUI01015750v1 I 129 C 0 s nomLeu3.chr13 109257779 9 - 110113093 AGATAGGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976896 9 - 92844088 GGGAAGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624437 9 + 96509753 GGGAAGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079860 9 - 16982598 GGGAAAGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923288 9 - 3785965 GGGAAAGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594912 7 - 90373283 GGGAAGG-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470422 9 + 6149316 GGGAATGCC i manLeu1.NW_012104365v1 C 0 T 235 s colAng1.NW_012114444v1 4703319 9 - 5823884 GGGAAGGCC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=11916.000000 s hg38.chr20_KI270871v1_alt 17541 3 + 58661 CCA s panTro5.chr20 65587430 3 + 66533130 CCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356353 3 + 62195757 CCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767136 3 - 1017659 CCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257788 3 - 110113093 CCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976905 3 - 92844088 CCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624446 3 + 96509753 CCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079869 3 - 16982598 CCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923297 3 - 3785965 CCA i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4703328 3 - 5823884 CTA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470431 235 + 6149316 T e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89594919 0 - 90373283 C a score=71924.000000 s hg38.chr20_KI270871v1_alt 17544 21 + 58661 GCCTCTGGGAAGT----CCCCACCC s panTro5.chr20 65587433 21 + 66533130 CCCTCTGGGAAGG----CCCCACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356356 21 + 62195757 CCCTCTGGGAAGG----CCCCACCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767139 21 - 1017659 CCCTCTTGGAAGG----CCCCACCC i gorGor5.CYUI01015750v1 C 0 T 162 s nomLeu3.chr13 109257791 21 - 110113093 CACTCAGGGCAGG----CTCCACCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976908 21 - 92844088 CCCTCAGGGAAGT----TCCCACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624449 21 + 96509753 CCCTCAGGGAAGT----TCCCACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079872 21 - 16982598 CCCTCAGGGAAGT----TCCCACCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923300 25 - 3785965 CCCTCAGGGAAGGAAGACCCCACCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594919 8 - 90373283 -----------------CTCCACCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470196 21 + 6149316 CCCACAGGGAAGG----CTCCAGGC i manLeu1.NW_012104365v1 T 235 C 0 s colAng1.NW_012114444v1 4703331 21 - 5823884 CCCACAGGGATGA----CTCCACCC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=11122.000000 s hg38.chr20_KI270871v1_alt 17565 3 + 58661 TCA s panTro5.chr20 65587454 3 + 66533130 TCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356377 3 + 62195757 ACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 766998 3 - 1017659 TCA i gorGor5.CYUI01015750v1 T 162 C 0 s nomLeu3.chr13 109257812 3 - 110113093 TCA i nomLeu3.chr13 C 0 T 108 s rheMac8.chr10 91976929 3 - 92844088 ACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624470 3 + 96509753 ACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079893 3 - 16982598 ACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923325 3 - 3785965 ACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594927 3 - 90373283 TCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470217 3 + 6149316 TCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703352 3 - 5823884 TCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=149022.000000 s hg38.chr20_KI270871v1_alt 17568 30 + 58661 GGGAAGGCTCCACCCACAGAGAAGGCTCCA s panTro5.chr20 65587457 30 + 66533130 GGGAAGGCTCCACCCACAGGGAAGGCTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356380 30 + 62195757 GGGAAGGCCCCACCCTCAGGGAAGGCTCCA i panPan2.chr20 C 0 T 76 s gorGor5.CYUI01015750v1 767001 30 - 1017659 GGGAAGGCTCCACCCACAGGGAAGGCTCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257707 30 - 110113093 GAGAAGGCCCCACCCACAGGGAAGGCCCCA i nomLeu3.chr13 T 108 C 0 s rheMac8.chr10 91976932 30 - 92844088 GGGAAGGCCCCACCCACAGGGAAGGCTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624473 30 + 96509753 GGGAAGGCCCCACCCACAGGGAAGGCTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079896 30 - 16982598 GGGAAGGCTCCACCCACAGGGAAGGCCCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923328 30 - 3785965 GGGAAGGCCCCACCCACAGGGAAGGCCCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594930 16 - 90373283 GGGAA--------------GGAAGGCTCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470220 30 + 6149316 GGAAAGGCTCCACACACAGGGAGGGCTCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703355 30 - 5823884 GTGAAGGCTCCACCCACAGGGAAGGCTCCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=22768.000000 s hg38.chr20_KI270871v1_alt 17598 7 + 58661 CCCTCTG s panTro5.chr20 65587487 7 + 66533130 CCCTCTG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767031 7 - 1017659 CCCTCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257737 7 - 110113093 CTCACAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976962 7 - 92844088 CCCTCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624503 7 + 96509753 CCCTCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079926 7 - 16982598 CCCTCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923358 7 - 3785965 CCCTCAG i cerAty1.NW_012001373v1 C 0 I 4 s chlSab2.chr2 89594946 7 - 90373283 CCCTCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470250 7 + 6149316 CCCTCAG i manLeu1.NW_012104365v1 C 0 T 29 s colAng1.NW_012114444v1 4703385 6 - 5823884 CCCTCA- i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e panPan2.chr20 61356410 76 + 62195757 T a score=72370.000000 s hg38.chr20_KI270871v1_alt 17605 17 + 58661 GGAAGGCTCCACCCTCA s panTro5.chr20 65587494 17 + 66533130 GGAAGGCCCCACCCTCA i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767038 17 - 1017659 GGAAGGCCCCACCCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257744 17 - 110113093 GGAAGGCCCCACCCTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976969 17 - 92844088 GGAAGGCCCCACCCTCA i rheMac8.chr10 C 0 T 1 s macFas5.chr10 95624510 17 + 96509753 GGAAGGCCCCACCCTCA i macFas5.chr10 C 0 I 39 s macNem1.NW_012014244v1 16079933 17 - 16982598 GGAAGGCTCCACCCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923369 17 - 3785965 GGAAGGCCCCACCCTCA i cerAty1.NW_012001373v1 I 4 I 4 s chlSab2.chr2 89594953 17 - 90373283 GGAAGGCCCCACCCTCA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4703391 17 - 5823884 GGAAGGCCCCACCCTCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470257 29 + 6149316 T e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e panPan2.chr20 61356410 76 + 62195757 T a score=9602.000000 s hg38.chr20_KI270871v1_alt 17622 8 + 58661 GGGAAGGA s panTro5.chr20 65587511 8 + 66533130 GGGAAGGA i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767055 8 - 1017659 GGGAAGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257761 8 - 110113093 GAGAAGGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624566 8 + 96509753 AGGAAGGC i macFas5.chr10 I 39 C 0 s macNem1.NW_012014244v1 16079950 8 - 16982598 GGGAAGTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923390 8 - 3785965 AGGAAGGC i cerAty1.NW_012001373v1 I 4 C 0 s chlSab2.chr2 89594970 5 - 90373283 GGGAA--- i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4703408 5 - 5823884 GGGAA--- i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470257 29 + 6149316 T e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T e panPan2.chr20 61356410 76 + 62195757 T a score=36022.000000 s hg38.chr20_KI270871v1_alt 17630 28 + 58661 TCCACCCACAGGGAAGGCTCCACCCTCT s panTro5.chr20 65587519 28 + 66533130 TCCACCCTCCGGGAAGGCCCCACCCTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356334 28 + 62195757 TCCACCCACAGGGAAGGCCCCACCCTCT i panPan2.chr20 T 76 C 0 s gorGor5.CYUI01015750v1 767063 27 - 1017659 TCCACCCACA-GGAAGGCCCCACCCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257769 28 - 110113093 CCCACCCACAAGATAGGCCCCACACTCA i nomLeu3.chr13 C 0 T 142 s macFas5.chr10 95624574 10 + 96509753 ------------------TCCACCCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16079958 10 - 16982598 ------------------CCCACCCACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923398 10 - 3785965 ------------------CCCACCCACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594975 17 - 90373283 -----------GGAAGGCTCCACCCTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470228 28 + 6149316 TCCACACACAGGGAGGGCTCCACCCTCA i manLeu1.NW_012104365v1 T 29 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703413 0 - 5823884 C e rheMac8.chr10 91976986 1 - 92844088 T a score=57065.000000 s hg38.chr20_KI270871v1_alt 17658 19 + 58661 GGGAAGGCCCCAC-CCA-------------------------------------------------------------------------------CAG s panTro5.chr20 65587547 99 + 66533130 GGGAAGGCCCCACGCCACCGGAAGGCCCGATCACCACACCCTCAGCGAAGCTCCGCGCACAGGGAAGTCCACCTCGTGGCAAGAGCGCCACCCCGCCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356362 19 + 62195757 GGGAAGGCCCCAC-CCA-------------------------------------------------------------------------------CAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767090 19 - 1017659 GGGAAGGCCCCAC-CCT-------------------------------------------------------------------------------CAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257655 19 - 110113093 GAGAAGGCCCCAC-CCA-------------------------------------------------------------------------------CAG i nomLeu3.chr13 T 142 C 0 s macFas5.chr10 95624584 19 + 96509753 GGGAAGACCCCAC-TCT-------------------------------------------------------------------------------CAG i macFas5.chr10 C 0 T 76 s macNem1.NW_012014244v1 16079968 19 - 16982598 GGGAAGGCCCCAC-CCA-------------------------------------------------------------------------------CAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923408 19 - 3785965 GGGAAGGCCCCAC-CCT-------------------------------------------------------------------------------CAG i cerAty1.NW_012001373v1 C 0 I 22 s chlSab2.chr2 89594992 19 - 90373283 GGGAAGGCCCCAC-CCT-------------------------------------------------------------------------------CAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470256 19 + 6149316 GGGAAGGCCCCAC-CCA-------------------------------------------------------------------------------CAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703413 18 - 5823884 -GGAAGGCTCCAC-CCT-------------------------------------------------------------------------------CAG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=64363.000000 s hg38.chr20_KI270871v1_alt 17677 17 + 58661 GGAAGGCCCCACCC----TCA s panTro5.chr20 65587646 21 + 66533130 GGAAGGATCCACCCTGTTTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356381 17 + 62195757 GGAAGGCCCCACCC----TCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767109 18 - 1017659 GGAAGGCTCCACCC---TCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257674 17 - 110113093 GGAAGGCCCCACCC----ACA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624527 17 + 96509753 GGAAGGCTCCACCT----TCA i macFas5.chr10 T 76 C 0 s macNem1.NW_012014244v1 16079987 17 - 16982598 GGAAGGCTCCACCC----TCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923449 17 - 3785965 GGAAGGCCCCACCC----TCA i cerAty1.NW_012001373v1 I 22 C 0 s chlSab2.chr2 89595011 17 - 90373283 GGAAGGCTCCACCC----ACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470275 17 + 6149316 GTAAGGCCCCACCC----ACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703431 17 - 5823884 GGAAGGCCCCACCC----TCA i colAng1.NW_012114444v1 C 0 I 71 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=51344.000000 s hg38.chr20_KI270871v1_alt 17694 12 + 58661 GGG-AAGGCCCCA s panTro5.chr20 65587667 13 + 66533130 GGGTAAGGCTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356398 12 + 62195757 GGG-AAGGCTCCA i panPan2.chr20 C 0 T 128 s gorGor5.CYUI01015750v1 767127 12 - 1017659 GGG-AAGGCCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257691 12 - 110113093 GGG-AAGGCCGCA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624544 12 + 96509753 GGG-AAGGCCCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080004 12 - 16982598 GGG-AAGGCCCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923466 12 - 3785965 GGG-AAGGCCCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595028 12 - 90373283 GGG-AAGGCCCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470292 12 + 6149316 GGG-ATGACTCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703519 12 - 5823884 GGG-AAGGCCCCA i colAng1.NW_012114444v1 I 71 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=18864.000000 s hg38.chr20_KI270871v1_alt 17706 6 + 58661 CCCTCA s panTro5.chr20 65587680 6 + 66533130 CCCACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356282 6 + 62195757 TCCTCA i panPan2.chr20 T 128 C 0 s gorGor5.CYUI01015750v1 767139 6 - 1017659 CCCTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257703 4 - 110113093 --CCCT i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624556 6 + 96509753 CCCCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080016 6 - 16982598 CCCTCA i macNem1.NW_012014244v1 C 0 I 93 s cerAty1.NW_012001373v1 2923478 6 - 3785965 CCCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595040 6 - 90373283 CCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470304 6 + 6149316 CCCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703531 6 - 5823884 CCCACA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=21872.000000 s hg38.chr20_KI270871v1_alt 17712 5 + 58661 GGGAA s panTro5.chr20 65587686 5 + 66533130 GGGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356288 5 + 62195757 GGGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767145 5 - 1017659 TGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257707 5 - 110113093 GAGAA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624562 5 + 96509753 AGGAA i macFas5.chr10 C 0 T 251 s macNem1.NW_012014244v1 16080115 5 - 16982598 GGGAA i macNem1.NW_012014244v1 I 93 I 4 s cerAty1.NW_012001373v1 2923484 5 - 3785965 GGGAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595046 5 - 90373283 GGGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470310 5 + 6149316 GGGAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703537 5 - 5823884 GGGAA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=-4878.000000 s hg38.chr20_KI270871v1_alt 17717 3 + 58661 -GGA s panTro5.chr20 65587691 3 + 66533130 -GGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356293 3 + 62195757 -GGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767150 3 - 1017659 -GGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257712 3 - 110113093 -GGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624316 2 + 96509753 -GA- i macFas5.chr10 T 251 I 1 s macNem1.NW_012014244v1 16080124 2 - 16982598 -GG- i macNem1.NW_012014244v1 I 4 I 1 s cerAty1.NW_012001373v1 2923489 3 - 3785965 GGA- i cerAty1.NW_012001373v1 C 0 T 322 s chlSab2.chr2 89595051 2 - 90373283 -GG- i chlSab2.chr2 C 0 I 5 s manLeu1.NW_012104365v1 5470315 2 + 6149316 -GG- i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4703542 2 - 5823884 -GG- i colAng1.NW_012114444v1 C 0 I 1 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=35009.000000 s hg38.chr20_KI270871v1_alt 17720 21 + 58661 T-CCACCCACAGGG---------------------------------------------------AAGGCTCC s panTro5.chr20 65587694 72 + 66533130 T-CCACCCACAGGGAAGGCCCACCCCTCAGGAAGCCGCACCTCCGGGAAGGCCCCACCCACAGGTAAGGCTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356296 22 + 62195757 TCCCACCCACGGGG---------------------------------------------------AAGGCTCC i panPan2.chr20 C 0 I 38 s gorGor5.CYUI01015750v1 767153 36 - 1017659 C-CCACCCTCTTGAAGGCCCCACCCCAGG------------------------------------AAGGCCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257715 21 - 110113093 C-CCACCCACAGGG---------------------------------------------------AAGGCCCC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624319 21 + 96509753 -TCCACACACAGGG---------------------------------------------------ATGACTCC i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16080127 13 - 16982598 -CCCACCCACAAGG----------------------------------------------------------- i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2923170 21 - 3785965 -CCCACCCACAGGG---------------------------------------------------AAGGCTCC i cerAty1.NW_012001373v1 T 322 C 0 s chlSab2.chr2 89595058 21 - 90373283 -CCCACCCACAGGG---------------------------------------------------AAGGCTCC i chlSab2.chr2 I 5 C 0 s manLeu1.NW_012104365v1 5470318 21 + 6149316 -TCCACCCACAGGG---------------------------------------------------AAAGCTCC i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4703545 21 - 5823884 -TCCACCCTCAGGG---------------------------------------------------AAGGCTCC i colAng1.NW_012114444v1 I 1 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=16025.000000 s hg38.chr20_KI270871v1_alt 17741 8 + 58661 ACCCACAG s panTro5.chr20 65587766 8 + 66533130 ACCCACAG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767189 8 - 1017659 ACCCACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257736 8 - 110113093 ACTCACAG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624340 8 + 96509753 ACCCTCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080140 2 - 16982598 ------AA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923191 8 - 3785965 AGGCTCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595079 8 - 90373283 ACCCAAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470339 8 + 6149316 ACTCTCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703566 8 - 5823884 ACCCACAG i colAng1.NW_012114444v1 C 0 T 126 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T e panPan2.chr20 61356318 38 + 62195757 I a score=23085.000000 s hg38.chr20_KI270871v1_alt 17749 6 + 58661 GGAAGG s panTro5.chr20 65587774 6 + 66533130 GGAAGG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767197 6 - 1017659 GGAAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257744 6 - 110113093 GGAAGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624348 6 + 96509753 GGAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080142 6 - 16982598 GGAAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923199 6 - 3785965 GAAAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595087 6 - 90373283 GGAAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470347 6 + 6149316 GGAAGG i manLeu1.NW_012104365v1 C 0 T 144 s colAng1.NW_012114444v1 4703448 6 - 5823884 TGAAGG i colAng1.NW_012114444v1 T 126 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T e panPan2.chr20 61356318 38 + 62195757 I a score=16797.000000 s hg38.chr20_KI270871v1_alt 17755 5 + 58661 CTCCA s panTro5.chr20 65587780 5 + 66533130 CTCCA i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767203 5 - 1017659 CTCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257750 5 - 110113093 CCCCA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624354 5 + 96509753 CTCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080148 5 - 16982598 CTCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923205 5 - 3785965 CTCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595093 5 - 90373283 TCCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470209 5 + 6149316 CTCCA i manLeu1.NW_012104365v1 T 144 C 0 s colAng1.NW_012114444v1 4703454 5 - 5823884 CCCCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T e panPan2.chr20 61356318 38 + 62195757 I a score=13694.000000 s hg38.chr20_KI270871v1_alt 17760 6 + 58661 CCCTCT s panTro5.chr20 65587785 6 + 66533130 CCCTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356356 6 + 62195757 CCCTCT i panPan2.chr20 I 38 C 0 s gorGor5.CYUI01015750v1 767208 6 - 1017659 CCCTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257755 6 - 110113093 CCCTCA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624359 6 + 96509753 CCCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080153 6 - 16982598 CCCACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923210 6 - 3785965 CACACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595098 6 - 90373283 CCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470214 6 + 6149316 GGCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703459 6 - 5823884 CCCACA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91976986 1 - 92844088 T a score=3971.000000 s hg38.chr20_KI270871v1_alt 17766 1 + 58661 G s panTro5.chr20 65587791 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356362 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767214 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257761 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976985 1 - 92844088 A i rheMac8.chr10 T 1 C 0 s macFas5.chr10 95624365 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080159 1 - 16982598 G i macNem1.NW_012014244v1 C 0 T 138 s cerAty1.NW_012001373v1 2923216 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595104 1 - 90373283 G i chlSab2.chr2 C 0 I 4 s manLeu1.NW_012104365v1 5470220 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703465 1 - 5823884 A i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=98985.000000 s hg38.chr20_KI270871v1_alt 17767 22 + 58661 GGAAGGC-----------------TCCACCCTCAGGGAA s panTro5.chr20 65587792 39 + 66533130 GGAAGGCCCCACCCTCAGGAAGGATCCACCCTCAGGGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356363 22 + 62195757 GGAAGGC-----------------CCCACCCACAGGGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767215 22 - 1017659 GGAAGGC-----------------TCCACCCTCTGGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257762 22 - 110113093 AGAAGGC-----------------CCCACCCACAAGATA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91976986 22 - 92844088 GGAAGGC-----------------TCCACCTTCAGGGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624366 22 + 96509753 GGAAAGC-----------------TCCACCCTCAGGGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080022 22 - 16982598 GGAAGGC-----------------TCCACCTTCAGGGAA i macNem1.NW_012014244v1 T 138 C 0 s cerAty1.NW_012001373v1 2923217 22 - 3785965 GGAGGGC-----------------TCCACCCTCAGGGAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595109 22 - 90373283 GGAAGGC-----------------TCCACCCTCAGGGAA i chlSab2.chr2 I 4 T 196 s manLeu1.NW_012104365v1 5470221 22 + 6149316 GAAAGGC-----------------TCCACACACAGGGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703466 22 - 5823884 GGATGAC-----------------TCCACCCTCAGGGAA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=12810.000000 s hg38.chr20_KI270871v1_alt 17789 4 + 58661 GGAT s panTro5.chr20 65587831 4 + 66533130 GGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356385 4 + 62195757 GGCC i panPan2.chr20 C 0 T 217 s gorGor5.CYUI01015750v1 767237 4 - 1017659 GGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257784 4 - 110113093 GGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977008 4 - 92844088 GGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624388 4 + 96509753 GTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080044 4 - 16982598 GGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923239 4 - 3785965 GGCC i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5470243 4 + 6149316 GGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703488 4 - 5823884 GGCT i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89595131 196 - 90373283 T a score=39091.000000 s hg38.chr20_KI270871v1_alt 17793 10 + 58661 CCACCCACAG s panTro5.chr20 65587835 10 + 66533130 CCACCCATAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356172 10 + 62195757 CCACCCTCAG i panPan2.chr20 T 217 C 0 s gorGor5.CYUI01015750v1 767241 10 - 1017659 CCACCCTCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257788 10 - 110113093 CCACACTCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977012 10 - 92844088 CCACCCCCAA i rheMac8.chr10 C 0 I 4 s macFas5.chr10 95624392 10 + 96509753 CCACCCACAG i macFas5.chr10 C 0 I 165 s macNem1.NW_012014244v1 16080048 10 - 16982598 CCACCCCCAA i macNem1.NW_012014244v1 C 0 I 4 s cerAty1.NW_012001373v1 2923243 10 - 3785965 CTACCCACAG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5470247 10 + 6149316 CCACCCTCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703492 10 - 5823884 CCACCCACAG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89595131 196 - 90373283 T a score=13200.000000 s hg38.chr20_KI270871v1_alt 17803 2 + 58661 GG s panTro5.chr20 65587845 2 + 66533130 GG i panTro5.chr20 C 0 T 176 s panPan2.chr20 61356182 2 + 62195757 GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767251 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257798 2 - 110113093 GG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977026 2 - 92844088 GG i rheMac8.chr10 I 4 C 0 s macFas5.chr10 95624567 2 + 96509753 GG i macFas5.chr10 I 165 C 0 s macNem1.NW_012014244v1 16080062 2 - 16982598 GG i macNem1.NW_012014244v1 I 4 C 0 s cerAty1.NW_012001373v1 2923253 2 - 3785965 GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594935 2 - 90373283 GG i chlSab2.chr2 T 196 C 0 s manLeu1.NW_012104365v1 5470257 2 + 6149316 GG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703502 2 - 5823884 GG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=3751.000000 s hg38.chr20_KI270871v1_alt 17805 1 + 58661 A s panTro5.chr20 65587671 1 + 66533130 A i panTro5.chr20 T 176 C 0 s panPan2.chr20 61356184 1 + 62195757 A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767253 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257800 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977028 1 - 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624569 1 + 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080064 1 - 16982598 A i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923255 1 - 3785965 A i cerAty1.NW_012001373v1 C 0 I 236 s chlSab2.chr2 89594937 1 - 90373283 A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470259 1 + 6149316 A i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703504 1 - 5823884 A i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=71372.000000 s hg38.chr20_KI270871v1_alt 17806 15 + 58661 AGGCTCCACCCTCTG s panTro5.chr20 65587672 15 + 66533130 AGGCTCCACCCACAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356185 15 + 62195757 AGGCCCCACCCTCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767254 15 - 1017659 AGGATCCACCCACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257801 15 - 110113093 AGGCTCCACCCTCAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977029 15 - 92844088 AGGCTGCACCCTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624570 15 + 96509753 AGGCTCCACCCTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080065 15 - 16982598 AGGCTCCACCCTCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923492 15 - 3785965 AGGCTCCACCCTGTG i cerAty1.NW_012001373v1 I 236 T 236 s chlSab2.chr2 89594938 15 - 90373283 AGGCTCCACCCTCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470260 15 + 6149316 AGGCCCCACCCACAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703505 15 - 5823884 AGGCTCCACCCTCAG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=80941.000000 s hg38.chr20_KI270871v1_alt 17821 20 + 58661 GGAAGGCCCCACCCTCAGGG s panTro5.chr20 65587687 20 + 66533130 GGAAGGATCCACCCACAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356200 20 + 62195757 GGAAGGCCCCGCCCACAGGG i panPan2.chr20 C 0 I 53 s gorGor5.CYUI01015750v1 767269 20 - 1017659 AGAAGGCCCCACCCTCAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257816 20 - 110113093 GATAGGCCCCACCCTCAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977044 20 - 92844088 GGAAGACCCCACTCTCAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624585 20 + 96509753 GGAAGACCCCACTCTCAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080080 20 - 16982598 GGAAGACCCCACTCTCAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923271 20 - 3785965 GGAAGGCTCCACCCACAGGG i cerAty1.NW_012001373v1 T 236 C 0 s chlSab2.chr2 89594953 8 - 90373283 GGAAGGCC------------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470275 20 + 6149316 GTAAGGCCCCACCCACAGGG i manLeu1.NW_012104365v1 C 0 I 58 s colAng1.NW_012114444v1 4703520 20 - 5823884 GGAAGGCCCCACCCACAGGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=88420.000000 s hg38.chr20_KI270871v1_alt 17841 20 + 58661 AAGGCTCCACCCTCA---------------GGGAA s panTro5.chr20 65587707 35 + 66533130 AAGGCCCACCCCTCAGGAAGCCGCACCTCCGGGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356273 20 + 62195757 AAGGCCCACTCCTCA---------------GGGAA i panPan2.chr20 I 53 C 0 s gorGor5.CYUI01015750v1 767289 20 - 1017659 GAGGCTCCACCGTCT---------------GGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257836 20 - 110113093 AAGGCTCCACCCTCA---------------GGGAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977064 20 - 92844088 AAGGCTCCACCCTCA---------------GGGAA i rheMac8.chr10 C 0 I 4 s macFas5.chr10 95624605 20 + 96509753 AAGGCTCCACCCTCA---------------GGGAA i macFas5.chr10 C 0 T 165 s macNem1.NW_012014244v1 16080100 20 - 16982598 AAGGCTCCACCCTCA---------------GGGAA i macNem1.NW_012014244v1 C 0 I 4 s cerAty1.NW_012001373v1 2923291 20 - 3785965 AAAGCGCCACCCTCA---------------GGGAA i cerAty1.NW_012001373v1 C 0 I 4 s chlSab2.chr2 89594961 14 - 90373283 ------CCACCCTCA---------------GGGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470353 20 + 6149316 AAGGCTCCACCCTCA---------------GGGAA i manLeu1.NW_012104365v1 I 58 C 0 s colAng1.NW_012114444v1 4703540 20 - 5823884 AAGGCTCCACCCTCA---------------GGGAA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=163663.000000 s hg38.chr20_KI270871v1_alt 17861 46 + 58661 GGA-TCCACCCAC----AGGGAAGGCT-CCACCCACAGGGAAGGCTCCACCC s panTro5.chr20 65587742 46 + 66533130 GGC-CCCACCCAC----AGGTAAGGCT-CCACCCACAGGGAAGGCTCCACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356293 48 + 62195757 GGATCCCACCCAC----GGGGAAGGCTCCCACCCACAGGGAAGGCTCCACCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767309 46 - 1017659 GGC-CCCACCCTC----AGGGAAGGCT-CCACCCACAGGGAAGGCTCCACCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257856 46 - 110113093 GTC-CCCATCCTC----AGGGAAGGCC-CCACCCATAGGGAAGGCTCCAGTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977088 50 - 92844088 GGC-CCCACCCACAAGGAAGGAAGGCT-CCACCCACAGGGAAGGCTCCACCC i rheMac8.chr10 I 4 C 0 s macFas5.chr10 95624460 46 + 96509753 GTT-CCCACCCAC----AGGGAAGGCC-CCACCCACAGGGAAGGCTCCACCC i macFas5.chr10 T 165 C 0 s macNem1.NW_012014244v1 16080124 44 - 16982598 GGC-CCCACCCACAAGGAAGGAAGGCT-CCACCCACAGGGAAGGCT------ i macNem1.NW_012014244v1 I 4 C 0 s cerAty1.NW_012001373v1 2923315 46 - 3785965 GAC-CCCACCCAC----AGGGAAGGCC-CCACCCACAGGGAAGGCCCCACCC i cerAty1.NW_012001373v1 I 4 C 0 s chlSab2.chr2 89594975 14 - 90373283 --------------------------------------GGAAGGCTCCACCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470373 46 + 6149316 GGT-CCCACCCAC----AGGGATGACT-CCATCCTCAGGGAAGGCTCCACCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703560 46 - 5823884 GGC-TCCACCCAC----AGGGAGGGCT-CCACCCTCAGGGAAGGCTCCACCC i colAng1.NW_012114444v1 C 0 I 143 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=8416.000000 s hg38.chr20_KI270871v1_alt 17907 4 + 58661 TCTG s panTro5.chr20 65587788 4 + 66533130 TCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356341 4 + 62195757 ACAG i panPan2.chr20 C 0 T 74 s gorGor5.CYUI01015750v1 767355 4 - 1017659 TCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257902 4 - 110113093 TCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977138 4 - 92844088 TCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624506 4 + 96509753 TCAG i macFas5.chr10 C 0 I 115 s cerAty1.NW_012001373v1 2923361 4 - 3785965 TCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594989 4 - 90373283 TCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470419 4 + 6149316 ACAG i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703606 143 - 5823884 I e macNem1.NW_012014244v1 16080168 0 - 16982598 C a score=7821.000000 s hg38.chr20_KI270871v1_alt 17911 2 + 58661 GG s panTro5.chr20 65587792 2 + 66533130 GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356271 2 + 62195757 GG i panPan2.chr20 T 74 C 0 s gorGor5.CYUI01015750v1 767359 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257906 2 - 110113093 AG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977142 2 - 92844088 GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624625 2 + 96509753 GG i macFas5.chr10 I 115 C 0 s cerAty1.NW_012001373v1 2923365 2 - 3785965 GG i cerAty1.NW_012001373v1 C 0 I 140 s chlSab2.chr2 89594993 2 - 90373283 GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470423 2 + 6149316 GG i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703606 143 - 5823884 I e macNem1.NW_012014244v1 16080168 0 - 16982598 C a score=15264.000000 s hg38.chr20_KI270871v1_alt 17913 4 + 58661 AAGG s panTro5.chr20 65587794 4 + 66533130 AAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356273 4 + 62195757 AAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767361 4 - 1017659 AAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257908 4 - 110113093 AAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977144 4 - 92844088 AAGG i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95624627 4 + 96509753 AAGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2923507 4 - 3785965 AAGG i cerAty1.NW_012001373v1 I 140 C 0 s chlSab2.chr2 89594995 4 - 90373283 AAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470425 4 + 6149316 AATG i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703606 143 - 5823884 I e macNem1.NW_012014244v1 16080168 0 - 16982598 C a score=34293.000000 s hg38.chr20_KI270871v1_alt 17917 20 + 58661 CCCCACCCTC----AGGGAAGGAT s panTro5.chr20 65587798 19 + 66533130 CCCCACCCTC----A-GGAAGGAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356277 20 + 62195757 CCCACTCCTC----AGGGAAGGAT i panPan2.chr20 C 0 I 22 s gorGor5.CYUI01015750v1 767365 20 - 1017659 ATCCACCCTC----AGGAAAGGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257912 20 - 110113093 CCCCACACTA----AGGGAAGGCC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624631 24 + 96509753 CCCCACCCACAAGGAAGGAAGGCT i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2923511 24 - 3785965 CCCCACCCCCAAGGAAGGAAGGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89594999 20 - 90373283 CCCCACCCTC----AGGGAAGGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470429 20 + 6149316 CCCCACCCTC----AGCAAAGGTC i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703606 143 - 5823884 I e macNem1.NW_012014244v1 16080168 0 - 16982598 C e rheMac8.chr10 91977148 1 - 92844088 I a score=5600.000000 s hg38.chr20_KI270871v1_alt 17937 2 + 58661 CC s panTro5.chr20 65587817 2 + 66533130 CC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767385 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257932 2 - 110113093 CC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624655 2 + 96509753 CC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2923535 2 - 3785965 CC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595019 2 - 90373283 CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470449 2 + 6149316 CC i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703606 143 - 5823884 I e macNem1.NW_012014244v1 16080168 0 - 16982598 C e rheMac8.chr10 91977148 1 - 92844088 I e panPan2.chr20 61356297 22 + 62195757 I a score=67187.000000 s hg38.chr20_KI270871v1_alt 17939 23 + 58661 ACCCACAGAGAAGGCCCCACCCT s panTro5.chr20 65587819 23 + 66533130 ACCCTCAGGGAAGGCTCCACCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356319 23 + 62195757 ACCCACAGGGAAGGCTCCACCCA i panPan2.chr20 I 22 C 0 s gorGor5.CYUI01015750v1 767387 23 - 1017659 ACCCACAGGGAAGGCTCCACCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257934 23 - 110113093 ACCCCCATGGAAGGCCCCACCTT i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624657 23 + 96509753 ACCCACAGGGAAGGCTCCACCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080168 7 - 16982598 ----------------CCACCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923537 23 - 3785965 ACCCTCAGGGAAGGCCCCACCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595021 23 - 90373283 ACCCACAGGGAAGGCCCCACCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470451 23 + 6149316 ACCCACAGGGAAAGCTCCACCCT i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e colAng1.NW_012114444v1 4703606 143 - 5823884 I e rheMac8.chr10 91977148 1 - 92844088 I a score=37736.000000 s hg38.chr20_KI270871v1_alt 17962 9 + 58661 CAGGGA----AGG s panTro5.chr20 65587842 9 + 66533130 TAGGGA----AGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356342 9 + 62195757 CAGGGA----AGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767410 9 - 1017659 CAGGGA----AGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257957 9 - 110113093 CAGGGA----AGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624680 13 + 96509753 CAGGGAAGGGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080175 13 - 16982598 CAGGGAAGGGAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923560 9 - 3785965 CAGGGA----AGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595044 9 - 90373283 CAGGGA----AGG i chlSab2.chr2 C 0 I 40 s manLeu1.NW_012104365v1 5470474 9 + 6149316 CAGGGA----AGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703749 9 - 5823884 CAGGGA----AGG i colAng1.NW_012114444v1 I 143 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91977148 1 - 92844088 I a score=62064.000000 s hg38.chr20_KI270871v1_alt 17971 15 + 58661 CCCCACCCTCTGGGA s panTro5.chr20 65587851 15 + 66533130 CCCCACCCTCAGGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356351 15 + 62195757 CCCCACCCTCTGGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767419 15 - 1017659 CCCCACCCTCAGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257966 15 - 110113093 CCCCACCCATAGGGA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624693 15 + 96509753 CCCCACCCTCTGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080188 15 - 16982598 CCCCACCCTCTGGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923569 15 - 3785965 CTCCACCATCTGGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595093 15 - 90373283 TCCCACCCTCAGGGA i chlSab2.chr2 I 40 C 0 s manLeu1.NW_012104365v1 5470483 15 + 6149316 TCCCACCCACAGGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703758 15 - 5823884 CTCCACCCTCAGGGA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e rheMac8.chr10 91977148 1 - 92844088 I a score=15806.000000 s hg38.chr20_KI270871v1_alt 17986 4 + 58661 AGGC s panTro5.chr20 65587866 4 + 66533130 AGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356366 4 + 62195757 AGGC i panPan2.chr20 C 0 T 73 s gorGor5.CYUI01015750v1 767434 4 - 1017659 AGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257981 4 - 110113093 AGGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977149 4 - 92844088 AGGC i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95624708 4 + 96509753 AGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080203 4 - 16982598 AGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923584 4 - 3785965 AGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595108 1 - 90373283 A--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470498 4 + 6149316 AGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703773 4 - 5823884 AGGC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=71788.000000 s hg38.chr20_KI270871v1_alt 17990 19 + 58661 CCCACCCTCAGGGAAGGCT s panTro5.chr20 65587870 19 + 66533130 CCCACCCTCCGGGAAGGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356297 19 + 62195757 CCCACCCACGGGGAAGGCT i panPan2.chr20 T 73 I 1 s gorGor5.CYUI01015750v1 767438 17 - 1017659 -CCA-CCTCAGGGAAGGAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109257985 19 - 110113093 TCCACCCTCAGGGAAGGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977153 19 - 92844088 CCCACCCTCTGGGAAGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624712 19 + 96509753 TCCACCCACAGGGAAGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080207 19 - 16982598 TCCACCCACAGGGAAGGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923588 19 - 3785965 TCCACTCACAGGGAAGGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595109 8 - 90373283 -----------GGAAGGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470502 19 + 6149316 TCCACCTTCAGGGAAGGCC i manLeu1.NW_012104365v1 C 0 T 90 s colAng1.NW_012114444v1 4703777 19 - 5823884 CCCACCCACAGGGATGACT i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=84569.000000 s hg38.chr20_KI270871v1_alt 18009 16 + 58661 CCACCCTCAGGGAAGG s panTro5.chr20 65587889 16 + 66533130 CCACCCTCCGGGAAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356317 16 + 62195757 CCACCCACAGGGAAGG i panPan2.chr20 I 1 C 0 s gorGor5.CYUI01015750v1 767455 16 - 1017659 CCACCCACAGGGAAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258004 16 - 110113093 CCACCCACAGGGAAGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977172 16 - 92844088 CCACCCACAGGGAAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624731 16 + 96509753 CCACCCTCAGGGAAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080226 16 - 16982598 CCACCCTCAGGGAAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923607 16 - 3785965 CCACCCACAGGGAAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595117 16 - 90373283 CCACCCTCAGGGAAGG i chlSab2.chr2 C 0 T 76 s manLeu1.NW_012104365v1 5470431 16 + 6149316 CCACCCTCAGCAAAGG i manLeu1.NW_012104365v1 T 90 C 0 s colAng1.NW_012114444v1 4703796 16 - 5823884 CCACCCTCAGTGAAGG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=59324.000000 s hg38.chr20_KI270871v1_alt 18025 12 + 58661 CTCCACCCACAG s panTro5.chr20 65587905 12 + 66533130 CCCCACCCTCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356333 12 + 62195757 CTCCACCCACAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767471 11 - 1017659 C-CCACCCACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258020 12 - 110113093 CTCCACCCTCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977188 12 - 92844088 CCCCACCCTCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624747 12 + 96509753 CTCCACCCACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080242 12 - 16982598 CTCCACCCACAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923623 12 - 3785965 CTCCACCCACAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595057 12 - 90373283 TCCCACCCACAG i chlSab2.chr2 T 76 I 62 s manLeu1.NW_012104365v1 5470447 12 + 6149316 TCCCACCCACAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703812 12 - 5823884 CTCCACCCACAG i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=222067.000000 s hg38.chr20_KI270871v1_alt 18037 44 + 58661 GGAAGGCTCCACCCTCAGGGAAGGCCCCACCCTCAGGGAAGGCC s panTro5.chr20 65587917 44 + 66533130 GGAAGGCTCCACCCACAGGGAAGGCCCCACCCTCTGGGAAGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356345 44 + 62195757 GGAAGGCCCCACCCTCTGGGAAGGCCCCACCCACAGGGAAGGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767482 42 - 1017659 GGAAGGCCCCACCCTCAGGGAATGCCCCACCC-CAGGGAAGG-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258032 44 - 110113093 GGAAGGCTCCACCCTCTGGGAAGGCCCCACACTCAGGGAAGGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977200 44 - 92844088 GGAAGGCTCCACCCACAGGGAAGGCCCCACCCACAGGGAAGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624759 44 + 96509753 GGAAGGCCCCACCCACAGGGAAGGCCCCACCCTCAGGGAAGGCC i macFas5.chr10 C 0 T 108 s macNem1.NW_012014244v1 16080254 44 - 16982598 GGAAGGCCCCACCCACAGGGAAGGCCCCACCCACAGGGAAGGCT i macNem1.NW_012014244v1 C 0 I 22 s cerAty1.NW_012001373v1 2923635 44 - 3785965 GGAAGTCTCCACCTTCACGGAAGGCTCCACCCTCAGGGAAGGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595131 44 - 90373283 GGAAGGCTCCACCCTCAGGGAAGGCCCCACCCTCAGGGAAGGCC i chlSab2.chr2 I 62 C 0 s manLeu1.NW_012104365v1 5470459 44 + 6149316 GGAAAGCTCCACCCTCAGGGAAGGTCCCACCCACAGGGAAGGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703824 43 - 5823884 GGAAGGCTCCACCCTCA-GGAAGGCCCCACCCTCAGGGAAGGCC i colAng1.NW_012114444v1 C 0 I 35 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=43537.000000 s hg38.chr20_KI270871v1_alt 18081 8 + 58661 CCACCCTC s panTro5.chr20 65587961 8 + 66533130 CCACCCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356389 8 + 62195757 CCACCCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767524 8 - 1017659 CCACCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258076 8 - 110113093 CCACCCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977244 8 - 92844088 CCACCCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624695 8 + 96509753 CCACCCTC i macFas5.chr10 T 108 C 0 s macNem1.NW_012014244v1 16080320 8 - 16982598 CCACCCTC i macNem1.NW_012014244v1 I 22 C 0 s cerAty1.NW_012001373v1 2923679 8 - 3785965 CCACACAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595175 8 - 90373283 CCACCCTC i chlSab2.chr2 C 0 T 54 s manLeu1.NW_012104365v1 5470503 8 + 6149316 CCACCTTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703902 8 - 5823884 CCACCCTC i colAng1.NW_012114444v1 I 35 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=64907.000000 s hg38.chr20_KI270871v1_alt 18089 13 + 58661 AGGGAAGGCTCCA s panTro5.chr20 65587969 13 + 66533130 AGGGAAGGATCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356397 13 + 62195757 AGGGAAGGCTCCA i panPan2.chr20 C 0 T 199 s gorGor5.CYUI01015750v1 767532 13 - 1017659 AGGGAAGGCCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258084 13 - 110113093 AGGGAAGGCTCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977252 13 - 92844088 AGGGAAGGCTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624703 13 + 96509753 TGGGAAGGCTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080328 11 - 16982598 TGGGAAGG--CCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923687 13 - 3785965 AGGGAAGGCCCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595129 13 - 90373283 AAGGAAGGCTCCA i chlSab2.chr2 T 54 C 0 s manLeu1.NW_012104365v1 5470511 13 + 6149316 AGGGAAGGCCCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703910 13 - 5823884 AGGGAAGGCTCCA i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=123565.000000 s hg38.chr20_KI270871v1_alt 18102 33 + 58661 CCCTCTGGGAAGGCCCCACCCCCAG----GGAAGGAT s panTro5.chr20 65587982 15 + 66533130 CCCT------------------CAG----GGAAGGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356211 33 + 62195757 CCCACAGGGAAGGCCCCACCCTCAG----GGAAGGAT i panPan2.chr20 T 199 C 0 s gorGor5.CYUI01015750v1 767545 33 - 1017659 CCCTCAGGGAAGGCCCCACCCACAG----GGAAGGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258097 33 - 110113093 CCCTCAGGGAAGGCTCCACCCACAG----GGAAGGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977265 22 - 92844088 CCCACAGGGAAGGCCCCACCCA--------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624716 33 + 96509753 CCCACAGGGAAGGCCCCACCCTCAG----GGAAGGCT i macFas5.chr10 C 0 I 54 s macNem1.NW_012014244v1 16080339 33 - 16982598 CCCACAGGGAAGGCCCCACCCTCAG----GGAAGGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923700 33 - 3785965 CCCTCTGGGAAGGCCCCACCCTCTG----GGAAGGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595142 33 - 90373283 CCCTCAGGGAAGGCCCCACCCTCAG----GGAAGGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470524 37 + 6149316 CCCACAGGGAAGGCCCCACCCACAGGGAAGGAAGGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703923 33 - 5823884 CCCTCAGGGAAGGCTCCACCCACAG----GGAAGGCT i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=9000.000000 s hg38.chr20_KI270871v1_alt 18135 2 + 58661 CC s panTro5.chr20 65587997 2 + 66533130 CC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356244 2 + 62195757 CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767578 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258130 2 - 110113093 CC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95624803 2 + 96509753 CC i macFas5.chr10 I 54 C 0 s macNem1.NW_012014244v1 16080372 2 - 16982598 CC i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89595175 2 - 90373283 CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470561 2 + 6149316 CC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4703956 2 - 5823884 CC i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 96888 40 + 555560 I e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e cerAty1.NW_012001373v1 2923733 0 - 3785965 C e rheMac8.chr10 91977287 0 - 92844088 C a score=57021.000000 s hg38.chr20_KI270871v1_alt 18137 14 + 58661 ACCCTCAGGGAAGG--- s panTro5.chr20 65587999 14 + 66533130 ACCCACAGGGAAGG--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356246 14 + 62195757 ACCCACAGAGAAGA--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767580 14 - 1017659 AACCTCAGGGAAGG--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258132 14 - 110113093 ACCCACAGGGAAGG--- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977287 9 - 92844088 -----CAGGGAAGG--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624805 14 + 96509753 ACCCACAGGGAAGG--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080374 14 - 16982598 ACCCACAGGGAAGG--- i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89595177 14 - 90373283 ACCCTCAGGGAAGG--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5470563 14 + 6149316 ACCCTCAGGGAAGG--- i manLeu1.NW_012104365v1 C 0 M 770 s colAng1.NW_012114444v1 4703958 14 - 5823884 ACCCTCAGGGAAGG--- i colAng1.NW_012114444v1 C 0 C 0 s dasNov3.JH567899 96928 17 + 555560 ACCCTCAGGCGACCTGC i dasNov3.JH567899 I 40 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e cerAty1.NW_012001373v1 2923733 0 - 3785965 C a score=19126.000000 s hg38.chr20_KI270871v1_alt 18151 5 + 58661 CTCCA- s panTro5.chr20 65588013 5 + 66533130 CCCCA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356260 5 + 62195757 CTCCA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767594 5 - 1017659 CCCCA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258146 5 - 110113093 CTCCA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977296 5 - 92844088 CCCCA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624819 5 + 96509753 CCCCA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080388 5 - 16982598 CCCCA- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923733 3 - 3785965 --CCA- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595191 5 - 90373283 CTCCA- i chlSab2.chr2 C 0 T 13 s colAng1.NW_012114444v1 4703972 5 - 5823884 CTCCA- i colAng1.NW_012114444v1 C 0 C 0 s dasNov3.JH567899 96945 5 + 555560 -CCCAG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470577 770 + 6149316 M e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C a score=30174.000000 s hg38.chr20_KI270871v1_alt 18156 8 + 58661 CCCACAGG s panTro5.chr20 65588018 8 + 66533130 CCCACAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356265 8 + 62195757 CCCACAGG i panPan2.chr20 C 0 I 174 s gorGor5.CYUI01015750v1 767599 7 - 1017659 CCC-CAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258151 8 - 110113093 CCCTCTGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977301 8 - 92844088 CCCACAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624824 8 + 96509753 CCCACAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080393 8 - 16982598 CCCACAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923736 8 - 3785965 CCCACAGG i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4703977 8 - 5823884 CCCACAGG i colAng1.NW_012114444v1 C 0 C 0 s dasNov3.JH567899 96950 8 + 555560 GCCACAGA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470577 770 + 6149316 M e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89595196 13 - 90373283 T a score=10724.000000 s hg38.chr20_KI270871v1_alt 18164 5 + 58661 GAAGG----------- s panTro5.chr20 65588026 5 + 66533130 GAAGG----------- i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767606 5 - 1017659 GAAGG----------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258159 5 - 110113093 AAAGG----------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977309 5 - 92844088 GAAGG----------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624832 5 + 96509753 GAAGG----------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080401 5 - 16982598 GAAGG----------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923744 5 - 3785965 GAAGG----------- i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4703985 5 - 5823884 GAAGG----------- i colAng1.NW_012114444v1 C 0 C 0 s dasNov3.JH567899 96958 13 + 555560 ---GGCCCAGCCGAGC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e cebCap1.NW_016107870v1 378357 52 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470577 770 + 6149316 M e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89595196 13 - 90373283 T e panPan2.chr20 61356273 174 + 62195757 I a score=28335.000000 s hg38.chr20_KI270871v1_alt 18169 10 + 58661 CCCCACCCT-------------------T s panTro5.chr20 65588031 10 + 66533130 CCCCACCCT-------------------C i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767611 29 - 1017659 CCCCACCCTCAGGGAAGGCCCCCACCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258164 10 - 110113093 CCCCACCCA-------------------C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977314 10 - 92844088 CCCCACCCA-------------------C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624837 10 + 96509753 CCCCACCCT-------------------C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080406 10 - 16982598 CCCCACCCA-------------------C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923749 10 - 3785965 CTCCACCCA-------------------C i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4703990 10 - 5823884 CTCCACCCT-------------------C i colAng1.NW_012114444v1 C 0 C 0 s cebCap1.NW_016107870v1 378409 10 + 1231380 CCCCACCCT-------------------C i cebCap1.NW_016107870v1 I 52 C 0 s dasNov3.JH567899 96971 10 + 555560 CCGAGCCCC-------------------C i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939772 0 + 11732439 C e canFam3.chr24 47080290 445 + 47698779 I e otoGar3.GL873542 22156038 0 + 22939663 C e manLeu1.NW_012104365v1 5470577 770 + 6149316 M e saiBol1.JH378156 15531357 0 + 16356641 C e calJac3.chr5 57410281 0 + 159171411 C e chlSab2.chr2 89595196 13 - 90373283 T e panPan2.chr20 61356273 174 + 62195757 I a score=313526.000000 s hg38.chr20_KI270871v1_alt 18179 35 + 58661 AGGGAAGGCTCCAGGGGACAGAAACCCCCTAGGAG s panTro5.chr20 65588041 35 + 66533130 AGGGAAGGCTCCAGGGGACAGAAACCCCCTAGGTG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767640 35 - 1017659 AGGGAAGGCTCCAGGGGACAGAAACCCCTAGGAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258174 35 - 110113093 AGGGAAGGCTCCAGGGGACAGAAACCCCCTAGGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977324 35 - 92844088 AGGGAAGGCTCCAGGGAACAGAAACCCCCTAGCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624847 35 + 96509753 AGGGAAGGCTCCAGGGAACAGAAACCCCCTAGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080416 35 - 16982598 AGGGAAGGCTCCAGGGAACAGAAACCCCCTAGCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923759 35 - 3785965 AGGGAAGGCCCCAGGGAACAGAAACCCCCTAGGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595183 35 - 90373283 AGGGAAGGCTCCAGGGAACAGAAACCCCCTAGGAG i chlSab2.chr2 T 13 C 0 s manLeu1.NW_012104365v1 5471353 35 + 6149316 AGGGAAGGCCCCAGGGAACAGAAACCCCCTAGGAG i manLeu1.NW_012104365v1 M 770 C 0 s colAng1.NW_012114444v1 4704000 35 - 5823884 AGGGAAGGCTCCAGGGAACAGAAACCCCCTCGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410281 35 + 159171411 AGGGAAGGCTCCCGGGTACAGACACCCCCTAGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531357 35 + 16356641 AGGGAAGGCTCCAGGGTACAGACACCCGCTGTGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378419 35 + 1231380 AGGGAAGGCTCCAGGGGACAGACACCCCCTAGGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1939772 35 + 11732439 AGGGAAGGCTCCAGGGGACAGACACCCCCGAGGAG i aotNan1.NW_018500483v1 C 0 I 16 s otoGar3.GL873542 22156038 25 + 22939663 AGGGAAAGCTTTGGAGGACAGAAGC---------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 96981 33 + 555560 AGTGAGGGCTCC-GAGGACGGGGACACGTGGGGG- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e canFam3.chr24 47080290 445 + 47698779 I e panPan2.chr20 61356273 174 + 62195757 I a score=7853.000000 s hg38.chr20_KI270871v1_alt 18214 14 + 58661 CAGGT--GACGGGGGG- s panTro5.chr20 65588076 14 + 66533130 CAGGT--GACGGGGGG- i panTro5.chr20 C 0 I 1 s gorGor5.CYUI01015750v1 767675 13 - 1017659 CAGGT--GACGGGGG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258209 14 - 110113093 CAGGT--GAGGGAGGG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977359 13 - 92844088 CAGGT--GAGGAGGG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624882 13 + 96509753 CAGGT--GAGGAGGG-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080451 13 - 16982598 CAGGT--GAGGAGGG-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923794 13 - 3785965 CAGGT--GAGGAGGG-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595218 13 - 90373283 CAGGT--GAGGAGGG-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471388 13 + 6149316 CAGGT--GAGGAGGG-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704035 13 - 5823884 CAGGT--GAGGAGGG-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410316 10 + 159171411 ----TTGGGGGGGG--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531392 9 + 16356641 ----TC-GGGGCTA--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378454 8 + 1231380 ----T--GGGGGGG--- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22156063 3 + 22939663 --------AGG------ i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 97014 14 + 555560 TGGGC--AGCAGGAA-T i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939807 16 + 11732439 I e canFam3.chr24 47080290 445 + 47698779 I e panPan2.chr20 61356273 174 + 62195757 I a score=166879.000000 s hg38.chr20_KI270871v1_alt 18228 23 + 58661 CGCGGGAGCTGGGAAGTCCCGGG s panTro5.chr20 65588091 23 + 66533130 CGCGGGAGCTGCGAAGTCCCGGG i panTro5.chr20 I 1 C 0 s panPan2.chr20 61356447 23 + 62195757 CGCGGGAGCTGGGAAGTCCCGGG i panPan2.chr20 I 174 C 0 s gorGor5.CYUI01015750v1 767688 23 - 1017659 CGTGGGAGCTGGGAAGTCCCGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258223 23 - 110113093 CGCGGGAGCTGGGAAGTCCCCGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977372 23 - 92844088 CGCCTGAGCTGGGAAGTCCCTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624895 23 + 96509753 CGCCTGAGCTGGGAAGTCCCTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080464 23 - 16982598 CGCCTGAGCTGGGAAGTCCCTGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923807 23 - 3785965 TGCCTGAGCTGGGAAGTCCCCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595231 23 - 90373283 CGCCTGAGTTGGGAAGTCCCCGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471401 23 + 6149316 CGCCTGAGCTGGGAAGTCCCCGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704048 23 - 5823884 CGCCTGAGCTGGGAAGTCCCTGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410326 23 + 159171411 CACCTGAGCTGGTAAGTATCCGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531401 22 + 16356641 CACCTGAGCTGGTAAGTCCCC-G i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378462 23 + 1231380 CACCTGAGCTGGTAAGTCCCCAG i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22156066 16 + 22939663 CCTTGGAGCAGGCAGG------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 97028 21 + 555560 CCTTGGAGC--AGAAGCCCCCAG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e aotNan1.NW_018500483v1 1939807 16 + 11732439 I e canFam3.chr24 47080290 445 + 47698779 I a score=972356.000000 s hg38.chr20_KI270871v1_alt 18251 107 + 58661 GCTCAG--TT-CCCCACCTCAGAGCAGAG--------GGCGGGCGGGCAAGGT-GGTGCCCACACA---GACGGACTCGAGGGGTCAGGCCCGCGTGGACCAGGAG---AAAGGCCCTCAGAACC s panTro5.chr20 65588114 107 + 66533130 GCTCAG--TT-CCCCACCTCAGAGCAGAG--------GGCGGGCGGGCAAGGT-GGTGCCCACACA---GACAGACTCGAGGGGTCAGGCCCGCGTGGACCAGGAG---AAAGGCCCTCAGAACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356470 107 + 62195757 GCTCAG--TT-CCCCACCTCAGAGCAGAG--------GGCGGGCGGGCAAGGT-GGTGCCCACACA---GACAGACTCGAGGGGTCAGGCCCGCGTGGACCAGGAG---AAAGGCCCTCAGAACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767711 108 - 1017659 GCTCAG--TTCCCCCACCTCAGAGCAGAG--------GGCGGGAGGGCAAGGTGGGTGCCCACACA---GACGGACTCGAGGGGTCAGGCCCGCGTGGACCAGGAG---AAAGGCCCTCAGAA-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258246 111 - 110113093 GCTCAG--TT-CTCCACCTCAGAGCAGAG----GGCCGGCGGGCGGGCAGGGT-GGTGCCCACACA---GACGGACTCGAGGGGTCAGGCCCGCGTGGACCAGGAG---AAAGACCCTCAGAACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977395 111 - 92844088 GCTCAG--TT-CCCCACGTCAGAGCAGAg----ggcgggcgggcgggcagggt-ggTGCCCACATA---GACGGACTGGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTCGGAACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95624918 111 + 96509753 GCTCAG--TT-CCCCACGTCAGAGCAGAg----ggcgggcgggcgggcagggt-ggTGCCCACATA---GACGGACTGGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTCGGAACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080487 111 - 16982598 GCTCAG--TT-CCCCACGTCAGAGCAGAG----GGCGGGCAGGCGGGCAGGGT-GGTGCCCACATA---GACGGACTGGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTCGGAACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923830 115 - 3785965 GCTCAG--TT-CCCCACGTCAGAGCAGAgggcaggcgggcgggcgggcagggt-ggTGCCTACATA---GACGGACTGGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTCGGAACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595254 111 - 90373283 GCTCCG--TT-CCCCACCTCAGAGCAGAG----GGCGGGCAGGCGGGCAGGGT-GGTGCCCACATA---GACGGACTCGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTCGGAACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471424 115 + 6149316 GCTCAG--TT-CCCCACGTCAGAGCAGAgggcaggcgggcgggcgggcagggt-ggTGCCCACATA---GACGGACTGGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTTGGAACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704071 107 - 5823884 GCTCAG--TT-CCCCACCTCAGAACAGAG--------GGCAGGCAGGCAGGGT-GGTGCCCACATA---GACGGACTCGAGGGGTCAGGCCCACGTGGACCAGGAG---AAAGGCCCTCGGAACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410349 107 + 159171411 GCTTCG--TT-CCCCACCTCACAGCAGAG--------GGCAGGCCGGCAGGGT-GGGGTGCACCCA---GACGGACTCAAGGGGTCAGGCCCGCCTGGACCGGGTG---AAAGGCCCTCAGAATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531423 106 + 16356641 GCTCCG--TG-CCCCACCTCACAGCGGAG--------GGCAGGCCGGCAAGGT-GGGGCGCGCCCC---AGCGGACT-GAGGGGTCAGGCCCGCGTGGACCGGGTG---AAAGGCCCTCAGCATC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378485 106 + 1231380 GCTCCG--TT-CCCCACCTCACAGCAGAG--------GGCAGGCTGGCAGGGT-GGGGCGCACCCA---GATGGACT-GAGGGGTCAGGCCCGCGTGCACTGGGTG---AAAAGCGCTCAGAATC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1939823 107 + 11732439 GCTCCG--TT-CCCCACCTCACAGGGGAG--------GGCAGGCCGGCAGGGT-GGGGTGCACCCA---GACGGACTCGAGGGGTCAGGCCCGCGTGGACTGGGTG---AAAGGCCCTCAGAATC i aotNan1.NW_018500483v1 I 16 C 0 s otoGar3.GL873542 22156082 84 + 22939663 --------------CACCTCAGGGCAGAG----GAC-AGCACGCAGGGAGGGT-GGTGCCCACCCC---AG----------------GGTCCCTCTGGGCCTGGGGCACCAAGTGCCTCGG--CC i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 97049 100 + 555560 GCCCAGCCTC-TCCCACCCCAGAGCGGAG--------GGT----------GGT-GGGGCCAGCCCACCTGGCGGCTTCTGAGCAACAGGCCACAACAG--CAGGCG---CCGCGGCCCCAGCCTC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181103840 396 + 182113224 I e canFam3.chr24 47080290 445 + 47698779 I a score=2473261.000000 s hg38.chr20_KI270871v1_alt 18358 261 + 58661 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCAGGCAACGAAAA-TCCCAGCTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAA-AACA---CGGGAAAGCCG-CCCTCCGACCACACAGGCTCACAGGACCTGCTAGCACTGCCTC-------------GACAGGCACTTTCTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGAACACCTGGGACCCCCAGGATAA---TTTGAGTTTCCTGGTCTGAAA- s panTro5.chr20 65588221 263 + 66533130 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCAGGCAACGAAAA-TCCCAGCTG---GCTGCCACCTGCCCTTTTGTAAAACAAACAAA-AACA---CGGGAAAGCCG-CCCTCCGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACAGGCACTTTCTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356577 263 + 62195757 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCAGGCAACGAAAA-TCCCAGCTG---GCTGCCACCTGCCCTTTTGTAAAACAAACAAA-AACA---CGGGAAAGCCG-CCCTCCGACCACAGAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACAGGCACTTTCTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 767819 262 - 1017659 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCAGGCAACGAAAA-TCCAGCTTG---GCTGCCACCTGCCCTTTTGTAAAACAAA-AAA-AAAA---CGGGAAAGCCGCCCCTCCGACCACACAAGCTCACAGGACCTGCTGGCACTG-CTC-------------GACAGGCACTTTCTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258357 260 - 110113093 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCAGGCACCGAAAA-TCCCAGCTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAA-AACA---CTGGAAAGCCG-CCCTCCGACCACACAGGCTCACAGGACCTGCTGA-ACTGCCTC-------------GACAGGCACTTTCTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977506 261 - 92844088 CCTCATCTCAGACCTTAATTTAAGCAAGAGCTAGGCACCGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAA-AACA---CGGGAAAGCTG-CCCTCCGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTAGGCCCCCTT---CTCTGCTGCCTGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCTCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625029 261 + 96509753 TCTCATCTCAGACCTTAATTTAAGCAAGAGCTAGGCACCGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAA-AACA---CGGGAAAGCTG-CCCTCCGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTGGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080598 261 - 16982598 CCTCATCTCAGACCTTAATTTAAGCAAGAGCTAGGCACCGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTTTGTAAAACAA--GAA-AACA---CGGGAAAGCTG-CCCTCTGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTAGGCCCCCTT---CTCTGCTTCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2923945 262 - 3785965 CCTCATCTCAGACCTTAATTTAAGCAAGAGCTAGGCACCGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAACAACA---CGGGAAAGCTG-CCCTCCGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTAGTCCGAAA- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595365 261 - 90373283 CCTCATCTCAGACCTTAATTTAAGCAAGGGCCAGGCACCGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAA-AGCA---CGGGAAAGCTG-CCCTCCAACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471539 261 + 6149316 CCTCATCTCAGACCTTAATTTAAGCAAGAGCTAGGCACCGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTTTGTAAAACAA--AAC-AACA---CGGGAAAGCTG-CCCTCTGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTAGGCCCCCTT---CTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCGAAA- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704178 261 - 5823884 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCAGGCACTGAAAA-TCCCAACTG---GCTGCCACCTGCCCTTCTGTAAAACAA--AAA-AACA---TGGGAAAGCTG-CCCTCCGACCACACAGGCTCACAGGACCTGCTGGCACTGCCTC-------------GACTGGCACTTTTTAGGCTCCCTT---TTCTGCTGCCCGAGGGGCTCCAAGGTTGTCTGTGTGCTCTGTCCTGTTGGGGGACACCTGGGACCCCCAGGATAA---TTTGAGTCTCCTGGTCCAAAA- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410456 264 + 159171411 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCCAGCATGGAACA-TCCCCACTG---GCTGCCACCTGCCCT--TATGGAAC----AGA-ATCA---CAGG-AAGCCG-CCCTCCACCTAC--AGGGTCACCGGACCTGCTGGCACTGCCCCCC--GGGGCCATGGACAGGCACTTTCTAGGCT-CCTT---ATCTGCTGCCCAAAGGGCTCCAAGGGTGTCTGTGTGCTCTATGCTATTGGGGGACACCTGGGACCCCCAGGATAA---TTCGGGTCTTCCGGTCTGAAA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531529 260 + 16356641 CCTCATCTCAGACCTTCATTT-AGCAAGAGCCCAGCATGGAATA-TCCCCACTG---GCTGCCAGCTGCCCT--TGTGAAAC----AAA---CA---CAGG-AAGCCG-CCCTCCGCCTAC--AGGGTCACCAGACCTGCTGGCACTGTCCCCC--GGGGCCATGGACAGGCACTTTCTAGGCT-CCTT---ATCTGCTGCCCGAGGGGCTCCAAGGGTGTCTGTGCGCTCTGTGCTGTTGGGGT-CACCTGGGACCCCCAGGATAA---TTCGGGTCTCCTGATCTGAAA- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378591 263 + 1231380 CCTCATCTCAGACCTTAATTTAAGCATGAGCCCGGCAGGGACTA-TCCTCACTG---GCTGCCACCTACCCT--TGTGAAAG----AGA-AACA---CAGG--AGCCG-CCCTCCGCCTAG--AGGGTCACCGGACCTGCTGGCACTGCCCCCC--GGGGCCATGGACTGGCACTTTCTAGGCT-CCTT---ATCTGCTGCCCGAGGGGCTCCAAGGGTGTCTGTGTGCTCTGTGCTGTTGGTGGGCACCTGGGACCCCCAGGATAA---TTCGGGTCTCCTGGTCTGAAA- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1939930 263 + 11732439 CCTCATCTCAGACCTTAATTTAAGCAAGAGCCCAGCATGGAGTA-TCCCCACTG---GCTGCCACCTGCCC---TGTGAAAC----AGA-AACA---CCGG-AAGCCG-CCCTCCGCCTAC--AGGGTCACCGGACCTGCTGCCACTGCCCCCC-TAGGGCCATGGGCAGGCACTTTCTAGGCT-CCTT---ATCTGCTGCCCGAGGGGCTCCAAGGATGTCTGTGTGCTCTGTGCCATTGGGGG-CACCTGGGACCCCCAGGATAA---TTGGGGTCTCCTGGTCTGAAA- i aotNan1.NW_018500483v1 C 0 I 235 s otoGar3.GL873542 22156166 255 + 22939663 CCTCATCTCAGACC--------------AGCCCACCCAGAAAAG-TCCTGGGGG---GATGCCAC--ACCCACTTGTAAAAC----AAG-AACC---CTTGAAAGCCA-TCCTCTGACCACAGGGGCTCA-AGGGCCTGCCAGTGCTGCCTCTCCTCTGCCCACACAGAGGCACTTTCTGAGTCTCCTTCTCCTCTGCTGCCC-AGGGGCTGCTGGGGTGTCTGT--GCTCTATACTGTCAGGGGGCTCCAGGGACCCTCAGGGTAA---CACAGATCTCCTGGGCCTAGA- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104236 235 + 182113224 CCTTGCCTCACATTTTCATCTAAGCTCAAGCTTTGTGCACACAATTCCCAAGCGTGTGCTGCCACCTGTCTTCT------------GAG-------------CAGTGG-CCCACAGGCCA------------------GCTGGCACTGTCTCCTGGTGGCCCCCAGAAAGGCACTTCCTGA---CCTTT---CCTTGCTTTCC-AGATTTTCCTGGGGTGTCC-TGTGTTTTGTGTTGCTGAGGA-TGCTGGAGGCCCCCTTGATGG---TATGACTTTCCTATCTCTAGA- i mm10.chr2 I 396 C 0 s dasNov3.JH567899 97149 201 + 555560 -----CCCCACAGCCTGATCTGAGCCTGGGAC-GGCAGAGAAAA-CCCCTGG-G---GCTTCCA----------------------AGG-TGGGTGCTGGGAGAGCCT-GCCCCCGCCC----CAGAGTGCAGGGCTTG--------GCCGC-------------CAGAGGC-------------CATC---TGCAGCAGCAC--CGGGCACC-----------TGTCCCGCCCCCACCTGAGGGGTACCTGGGACC--CAGGACAACAGTCTCTGGCCCCAGCTCTGTAGA i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47080290 445 + 47698779 I a score=323143.000000 s hg38.chr20_KI270871v1_alt 18619 34 + 58661 GTCTCACTGTGATCCGGGGT------TACTTTCCTG--CCCC s panTro5.chr20 65588484 34 + 66533130 GTCTCACTGTGATCCGGGGT------TACTTTCCTG--CCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356840 34 + 62195757 GTCTCACTGTGATCCGGGGT------TACTTTCCTG--CCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768081 34 - 1017659 GTCTCACTGTGATCCGGGGT------TACTTTCCTG--CCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258617 33 - 110113093 GCCTCACTGTGATCCGGGGT------TACTTTCCTG---CCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977767 34 - 92844088 GCCTCACTGTGAGCCGGGGT------TACTTTCCTG--CCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625290 34 + 96509753 GCCTCACTGTGAGCCGGGGT------TACTTTCCTG--CCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080859 34 - 16982598 GCCTCACTGTGAGCCGGGGT------TACTTTCCTG--CCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924207 34 - 3785965 GCCTCACTGTGAGCCGGGGT------TACTTTCCTG--CCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595626 34 - 90373283 GCCTCACTGTGATCCAGGGT------TACTTTCCTG--CCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471800 34 + 6149316 GCCTCACTGTGAGCCGGGGT------TACTTTCCTG--CCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704439 34 - 5823884 GCCTCACTGTGATCCGGGGT------TACTTTCCTG--CCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410720 34 + 159171411 GCCTCACTGTAAGCTGGGAT------CAGTTTCCTG--CCCC i calJac3.chr5 C 0 I 4 s saiBol1.JH378156 15531789 36 + 16356641 GCCTCGCTGTGAGCCGGGGT------CACTTTCCCGCCCCCC i saiBol1.JH378156 C 0 I 4 s cebCap1.NW_016107870v1 378854 34 + 1231380 GCCTCGCTGTGAGCCAGGGT------CGCTTTCCCG--CCCC i cebCap1.NW_016107870v1 C 0 I 76 s otoGar3.GL873542 22156421 33 + 22939663 GCCTCACTATGCCCCAGGGT------CACTTTCCTT--CCC- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104471 40 + 182113224 ATCCCACTGTAGTCTGGGTTATTCCCTATATGCATG--CATA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 97350 29 + 555560 GCCTCCCTTT--CCTGGGGT------TGCTCTCCTC--C--- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940193 235 + 11732439 I e canFam3.chr24 47080290 445 + 47698779 I a score=104592.000000 s hg38.chr20_KI270871v1_alt 18653 16 + 58661 CCACGCCGGAGCCCTA s panTro5.chr20 65588518 16 + 66533130 CCACGCCGGAGCCCTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356874 16 + 62195757 CCACGCCGGAGCCCTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768115 15 - 1017659 CCACGCCGGAG-CCTA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258650 16 - 110113093 CCACGCAGGAGCCCTA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977801 16 - 92844088 CCACGCAGGAGCCCTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625324 16 + 96509753 CCACGCAGGAGCCCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080893 16 - 16982598 CCACGAAAGAGCCCTA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924241 16 - 3785965 CCACGCAGGAGCCCTA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595660 16 - 90373283 CCACGCAGGAGCCCTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471834 16 + 6149316 CCACGCAGGAGCCCTA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704473 16 - 5823884 CTACGCAGGAGCCCTA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410758 15 + 159171411 CCACGCAGGAGCCCT- i calJac3.chr5 I 4 C 0 s saiBol1.JH378156 15531829 15 + 16356641 CCACGCAGGAGCCCT- i saiBol1.JH378156 I 4 C 0 s otoGar3.GL873542 22156454 15 + 22939663 CCACATAGAGATCCT- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104511 13 + 182113224 --CCATAGTTGCCCT- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 97379 12 + 555560 CCGTGCCGAGAC---- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940193 235 + 11732439 I e cebCap1.NW_016107870v1 378888 76 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I a score=527256.000000 s hg38.chr20_KI270871v1_alt 18669 66 + 58661 GGTCCTTGATGGGGGACGGGGTCA---TGGTACTGGTTCCACTCTTGAAGCTTGGGC---ACCTCGAGCTGC s panTro5.chr20 65588534 66 + 66533130 GGTCCTTGATGGGGGACGGGGTCA---TGGTACTGGTTCCACTCTTGAAGCTTGGGC---ACCTCGAGCTGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356890 66 + 62195757 GGTCCTTGATGGGGGACGGGGTCA---TGGTACTGGTTCCACTCTTGAAGCTTGGGC---ACCTCGAGCTGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768130 66 - 1017659 GGTCCTTGATGGGGGACGGGGTCA---TGGTACTGGTTCCACTCTTGAAGCTTGGGC---ACCTCGAGCTGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258666 58 - 110113093 GGTCCTTGCTGGCGGACGGGGTCA---CGGTGCTGG--------TTGAAGCTTGGGC---ACTTCGAGCTGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977817 66 - 92844088 GGTCCTTGCTGGGGGATGGGGTCA---CAGTGCTGGTTCCACTCATGAAGCCTGGGC---ACCTCGAGCTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625340 66 + 96509753 GGTCCTTGCTGGGGGATGGGGTCA---CAGTGCTGGTTCCACTCATGAAGCCTGGGC---ACCTCGAGCTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080909 66 - 16982598 GGTCCTTGCTGGGGGATGGGGTCA---CAGTGCTGGTTCCACTCATGAAGCCTGGGC---ACCTCGAGCTGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924257 66 - 3785965 GGTCCTTGCTGGGGGACGGGGTCA---CAGTGCTGGTTCCACTCATGAAGCCTGGGC---ACCTCCAGCTGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595676 66 - 90373283 GGTCCTTGGTGGGGGACAGGGTCA---CAGTGCTGGTTCCACTCATGAAGCCTGGGC---ACCTCAAGCTGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471850 66 + 6149316 GGTCCTTGCTGGGGGACGGGGTCA---CAGTGCTGGTTCCACTCATGAAGCCTGGGC---ACCTCGAGCTGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704489 66 - 5823884 GGTCCTTGCTGGGGGACGGGGTCA---CAGTGCTGGTTCCACTCAAGAAGCCTGGGC---ACCTCCAGCTGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410773 64 + 159171411 GGTCTTTGCTGGGGGACAGGGT-----TGGTGCTGGCTCCACTCATGAAGCCTGGGC---ACCTGGAGCTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531844 64 + 16356641 GGTCTTTGCTGGGGGACGGGGT-----CGGTGCTGGCTCCACTCATGAAGCCTGGGC---ACCTGGAGCTGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 378964 64 + 1231380 GGTCTTTGCTGGGGGACGGGGT-----TGGTGCTGGCTCCACTCATGAAGCCTGGGC---ACCTGGAGCTGC i cebCap1.NW_016107870v1 I 76 I 146 s otoGar3.GL873542 22156469 40 + 22939663 GGTCCTGACTGG------AGGTCA---TAACTATCTGTCCACTCTTGTA----------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104524 61 + 182113224 GGTCTTTGCTGGAGAACATAGACACCTCTGTACT--------TCTTAAGTCTTGAGC---TGCTAGAGGCTT i mm10.chr2 C 0 I 2 s dasNov3.JH567899 97391 62 + 555560 ---------GGGGGGTCGAGGTCATC-TCGTCATGTGTTAGACCCTGCAGAGTCTGCCAGACCCCAAGCCGG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940193 235 + 11732439 I e canFam3.chr24 47080290 445 + 47698779 I a score=-2623.000000 s hg38.chr20_KI270871v1_alt 18735 43 + 58661 CGGTCCAGAGCAG-----CCCGGGGAGCAGCTGTCGGTCCAGAGCAGC s panTro5.chr20 65588600 43 + 66533130 CGGTCCAGAGCAG-----CCTGGGGAGCAGCTGTCGGTCCAGAGCAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356956 43 + 62195757 CGGTCCAGAGCAG-----CCTGGGGAGCAGCTGTCGGTCCAGAGCAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768196 43 - 1017659 CGGTCCAGAGCAG-----CCTGGGGAGCAGCTGTTGGTCCAGAGCAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258724 14 - 110113093 C----------------------------------GGTCCAGAGCAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977883 14 - 92844088 T----------------------------------GGTCCAGAGCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625406 14 + 96509753 T----------------------------------GGTCCAGAGCAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080975 14 - 16982598 T----------------------------------GGTCCAGAGCAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924323 14 - 3785965 T----------------------------------GGTCCAGAGCAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595742 14 - 90373283 T----------------------------------GGTCCAGAGCCGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471916 14 + 6149316 T----------------------------------GGTCCAGAGCAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704555 14 - 5823884 T----------------------------------GGTCCAGAGCAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410837 18 + 159171411 ----------------------AGGAA--------GATCCGGAGCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531908 12 + 16356641 ----------------------AGGAA--------GACCCGG------ i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22156509 3 + 22939663 ---------------------------------------------AAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104587 12 + 182113224 ----------------------------------CAGCCTCCAGCA-- i mm10.chr2 I 2 C 0 s dasNov3.JH567899 97453 33 + 555560 -------GGGCCACCGGCCCTGGAGGG--------GGTCCCGGGCGGC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940193 235 + 11732439 I e cebCap1.NW_016107870v1 379028 146 + 1231380 I e canFam3.chr24 47080290 445 + 47698779 I a score=772430.000000 s hg38.chr20_KI270871v1_alt 18778 139 + 58661 -CCGGGGC-GGGGGGCATTTACC-----TTGAGCTCCCTGG---GGA-----G--CGTCCTTGCAACGCAC-AAAACACAGCACG-ACCCACGGCCAGGACGAT--AAAGCAAAGGGGT-GAGGAAATGAAAGTGAAGA--GAAAGCCGC-AGC--TCTA--ACACAA s panTro5.chr20 65588643 139 + 66533130 -CCGGGGC-GGGGGGCATTTACC-----TTGAGCTCCCTGG---GGA-----G--CATCCTTGCAACGCAC-AAAACACAGCACG-ACCCACGGCCAGGACGAT--AAAGCAAAGGGGT-GAGGAAATGAAAGTGAAGA--GAAAGCCGC-AGC--TCTA--ACACAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61356999 139 + 62195757 -CCGGGGC-GGGGGGCATTTACC-----TTGAGCTCCCTGG---GGA-----G--CATCCTTGCAACGCAC-AAAACACAGCACG-ACCCACGGCCAGGACGAT--AAAGCAAAGGGGT-GAGGAAATGAAAGTGAAGA--GAAAGCCGC-AGC--TCTA--ACACAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768239 140 - 1017659 -CCGGGGC-GGGGGGCATTTACC------TGAGCTCCCTGG---GGA-----G--CGTCCTTGCAACGCACAAAAACACAGCACGAACCCACGGCCAGGACGAT--AAAGCAAAGGGGT-GAGGAAATGAAAGTGAAGA--GAAAGCCGC-AGC--TCTA--ACACAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258738 139 - 110113093 -CCGGGGC-AGGGGGCATTTATC-----TTGCGCTCCCTGG---GGA-----G--CGTCCTTGCAACGCAC-ACAACACAGCACG-ACCCATGGCCAGGACGAT--AAAGCAAAGGGGT-GAGGAAATGAAAGTGAAGA--GAAAGCCGC-AGC--TCTA--ACACAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91977897 130 - 92844088 -CCGGGGA-GAGCTGT-------------CAAGCTTCCTGG---GGA-----G--CGTCCTTGCAACGCAC-ACAACACAGCATG-ACCCATGGCCAGGACGAT--AAAGCAACGGGG--GAGGAAATGAAAGTGAAAA--GAAAGCCGC-AGC--TCTA--ACACAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625420 130 + 96509753 -CCGGGGA-GAGCTGT-------------CAAGCTTCCTGG---GGA-----G--CGTCCTTGCAACGCAC-ACAACACAGCATG-ACCCATGGCCAGGACGAT--AAAGCAACGGGG--GAGGAAATGAAAGTGAAAA--GAAAGCCGC-AGC--TCTA--ACACAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16080989 130 - 16982598 -CCGGGGA-GAGCTGT-------------CAAGCTTCCTGG---GGA-----G--TGTCCTTGCAACGCAC-ACAACACAGCATG-ACCCATGGCCAGGACGAT--AAAGCAACGGGG--GAGGAAATGAAAGTGAAAA--GAAAGTCGC-AGC--TCTA--ACACAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924337 130 - 3785965 -CCAGGGA-GAGCTGT-------------CAAGCTCCCTGG---GGA-----G--CGTCCTTGCAACGCAC-ACAACACAGCATG-ACCCATGGCCAGGACGAT--AAAGCAACGGGG--GAGGAAATGAAAGTGAAAA--GAAAGCCGC-AGC--TCTA--ACACAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595756 130 - 90373283 -CCGGGGA-GAGCTGT-------------CAGGCTCCCTGG---GGA-----G--TGTCCTTGCAACGCAC-ACAACACAGCATG-ACCCATGGCCAGGACGAT--AAAGCAACGGGG--GAGGAAATGAAAGTGAAAA--GAAAGCCGC-AGC--TCTA--ACACAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5471930 130 + 6149316 -CCGGGGA-GAGCTGC-------------CAAGCTCCCTGG---GGA-----G--CGTCCTTGCAACGCAC-ACAACACAGCATG-ACCCATGGCCAGGACGAT--AAAGCAACGGGG--GAGGAAATGAAAGTGAAAA--GAAAGCCGC-AGC--TCTA--ACACAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704569 131 - 5823884 -CCGGGGAGGGGCTGT-------------CAAGCTCCCTGG---GGA-----G--GGTCCTTGCAACGCAC-ATAACACAGCATG-ACCCATGGCCAGGACAAT--AAAGCAACAGGG--GAGGAAATGAAAGTGAAAA--GAAAGCCGC-AGC--TCTA--ACACAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410855 132 + 159171411 -CTGGGG--GGGCCAT--TCACT-----GCAAGCTCCCTGGTGGGGG-----G--CGTCCTTGCAAGGTCT-ACAA-ACAGCACA-A-CCACAG-CAGGACAAC--AAAGCA-AAGGT--GGAGAAATGAAGGTGAAAA--CAAAGCCAC-AGC--CGGA--ACTC-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15531920 107 + 16356641 -------------------------------AGCCCCCTGGGGAGGG-----G--CGTCCTCGCAAGGCAC-ACAA-ACAGCAGG-A-CCACAG-CA-GACGAC--AGAGCAGAGGGT--GGGGAAATGAAGGGGA------ACAGCCGC-GGC--TGGA--ACTC-- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22156512 132 + 22939663 -CCAGGGA------GC-------------TGAGGCCTCTGG---GGAGGGGCG--TGTCCTGGAGGCAC-C-ACGACACAAAGGA-GGCCCAGCCCAGGGGAATGGAAAGCAGAGAG---AGGGAAATGAAAGTGAAAAACAAAAACTGA-ACA--CTAA--AAACAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104599 129 + 182113224 -CTAAGGT-TAGCTTTCATTTCA-----TAGAATGTCTTGGAGTGGG-----G--AATC-------------ACAACACAATGTA-CGCAAAAG--AGGAATGA--AAAGCAAAGGAT--GGGTACAAGACTAAGAAAT--AAAAGCCAC-AACAGCATA--AAACAA i mm10.chr2 C 0 C 0 s canFam3.chr24 47080735 138 + 47698779 -CCAGAGC-CCGGGGGCTCGCCC-----CGCAGCTCTCGGG---AGG-----GCCCGTCTTCGCCGCGCTC-ACAACACTATGTG-ACCCACAGCAAGGAAGCT---AAGCAAAGGGGTGGATGGAGTGA----GAAAT--AAGAGCCACGAGC--TATA--AAACAA i canFam3.chr24 I 445 C 0 s dasNov3.JH567899 97486 143 + 555560 GCTGGGCCTGAGGGGCTTTCACCCCATCTGCAGCTCTCTGG---GGA-----G---------GCGGCGCCC-ACAACACAAGGCA-GTGGACAGCAAAGGAAAC--AACGCAAAGGGGCCAGGGGAACGATGGCGAAAA-CGAAAGCCGC-AGT--GCTACGAAACAA i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940193 235 + 11732439 I e cebCap1.NW_016107870v1 379028 146 + 1231380 I a score=1594134.000000 s hg38.chr20_KI270871v1_alt 18917 131 + 58661 AGGGCAGAAG-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAA----ATACAT--TTTAAAG--AAAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAATAAAAA s panTro5.chr20 65588782 131 + 66533130 AGGGCAGAAT-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAA----ATACAT--TTTAAAG--AAAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGGAAATAAAAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357138 130 + 62195757 AGGGCAGAAT-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAA----ATACAT--TTTAAAG---AAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGGAAATAAAAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768379 133 - 1017659 AGGGCAGAAGACAACGCCCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAA----ATACAT--TTTAAAG---AAAAA--AA------------------TCAATCAAACAATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAAT-AAAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109258877 136 - 110113093 AGGGCAGAAT-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACATACAT--TTTAAAG-AAAAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAATAAAAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978027 136 - 92844088 AGGGCAGAAT-CAACG-CCTTGAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACATACAT--TTTAAAG--AAAAAA--AA-----------------ATCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAACAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625550 134 + 96509753 AGGGCAGAAT-CAACG-CCTTGAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACATACAT--TTTAAAG--AAAAAA--AA-------------------CAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAACAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081119 135 - 16982598 AGGGCAGAAT-CAACG-CCTTGAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACATACAT--TTTAAAG--AAAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAACAAAAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924467 135 - 3785965 AGGGCAGAAT-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACATACAT--TTTAAAG--AAAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAACAAAAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89595886 135 - 90373283 AGGGCAGAAT-CAACG-CCTCGAAATAAACCACACACAGAACTTCTTTGT-GAAAAATACATACAT--TTTAAAG--AAAAAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAACAAAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472060 135 + 6149316 AGGGCAGAAT-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACATACAT--TTTAAAG--AAAGAA--AA------------------TCAATCAA--AATAATGAACAACA--AAAAGTGGGGTT------TAAGAACAAATGGAAAACAAAAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704700 135 - 5823884 AGGGCAGAAT-CAACG-CCTCAAAATAAACCACACACAGAACTCCTTTGT-GAAAAATACACACAT--TTTACAG--AAAAAA--AA------------------TTAATCAA--AATAATGAACAACA--AAAAATGGGGTT------TAAGAACAAATGGAAAACAAAAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57410987 129 + 159171411 AGGGCAGAAC-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGT-GAAAAACACATACAT--TTTAAAG---AAAAA--CA----------------------TCAA--AAGAATGAACAACA--AAAAC-AGGTTT------TAAGAACAAATGGAAAATAAAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532027 133 + 16356641 AGGGCAGAAC-CAACA-CCTCGAAATGAACCACACACAGAACTCCGTCGT-GAAAAAGACGTACAT--TTTAAAGAAAAAAAA--AA----------------------TCAA--AACAATGAACAACA--AAAACGGGGTTT------TAAGAACAAACGGAAAATAAAAA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379174 131 + 1231380 AGGGCAGAAC-CAACG-CCTTGAAATAAACCACACACAGAACTCCTTTGT-GAAGAACACGTACAT--TTTAAAG--AAAAAA--AA----------------------TCAA--AACAATGAACAACA--AAAACGGGGTTT------TAAGAACAAATGGAAAATGAAAA i cebCap1.NW_016107870v1 I 146 I 13 s aotNan1.NW_018500483v1 1940428 127 + 11732439 AGGGCAGAAC-CAACG-CCTCGAAATAAACCACACACAGAACTCCTTTGC-GAAAAA----TACAT--TTTAAAG--AAAAAA--AA----------------------TCAA--AAGAATGAACAACA--AAAACGGGGTTT------TAAGAACAAATGGAAAATCAAAA i aotNan1.NW_018500483v1 I 235 I 24 s otoGar3.GL873542 22156644 141 + 22939663 AGAACAAAAT-TAATG-CTTTGAAATAAATCACACACAGAA--TCTTTTT-GAAATATACATACAT--TTTAAAG--AAAAAAACAA------------------TTGATTAA--AATAATGAACAACA--AAAAAGGGGTTTTTTTTGTTGAAACAGATGAAAAATAGAAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104728 114 + 182113224 AGAACAAAAT-CAATA-CTGTGAAATAAACCACACA---GAATCCTTTGTGGAAAAATACATACAC--TTAAAAA---ACAAA--TA-----------------------CAA--ATGAATG---------------GGGTTT------AAAGAACAAATGTAAATTAAAAA i mm10.chr2 C 0 I 7 s canFam3.chr24 47080873 153 + 47698779 AAACCAAAAT-TAATA-CTGCGAAATAAATCACACACAGGACTCC---GT-GGAGAGTACACACGTTGTTTaaaa--aaaaaa--aaaagaaaagaaaagaaaaATCAATGAA--AATAATGAACAACAG-AAAAAATGGGTT------TCAGAACAAACAGAGAATGAAGA i canFam3.chr24 C 0 I 7 s dasNov3.JH567899 97629 148 + 555560 AGAACAAAAT-TAACA-CTTGGAAATAAATCACACACAGGACTCCTGTTT-GAACAAAACACACAT--TTTAAAG--AAACAA--AA-------CCAAAAATGAATCAATCAA--AACAATGAATAACAACAAAAAGGGGGGT------TATGAAGAAACAGAAAATAAAAA i dasNov3.JH567899 C 0 I 10 a score=47438.000000 s hg38.chr20_KI270871v1_alt 19048 15 + 58661 ATGAAACAGTTGCTT--------------------- s panTro5.chr20 65588913 15 + 66533130 ATGAAACAGATGCTT--------------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357268 15 + 62195757 ATGAAACAGATGCTT--------------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768512 15 - 1017659 ATGAAACAGATGCTT--------------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259013 15 - 110113093 ATGAAACAGATGCTT--------------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978163 15 - 92844088 ACGAAACAGATGCGT--------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625684 15 + 96509753 ACGAAACAGATGCGT--------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081254 15 - 16982598 ACGAAACAGATGCGT--------------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924602 15 - 3785965 ACGAAACAGATGCGT--------------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596021 15 - 90373283 ACGAAACAGATGCGT--------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472195 15 + 6149316 ACGAAACAGATGCGT--------------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704835 12 - 5823884 ---AAACAGATGCGT--------------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411116 12 + 159171411 --GGAAGGGATGCT---------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532160 12 + 16356641 --CGAAGGGATGCC---------------------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22156785 13 + 22939663 ATAAAACCGATGC----------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181104849 9 + 182113224 ACCATGCAG--------------------------- i mm10.chr2 I 7 C 0 s canFam3.chr24 47081033 8 + 47698779 GTGAGCCG---------------------------- i canFam3.chr24 I 7 C 0 s dasNov3.JH567899 97787 36 + 555560 ATGAGCCAGTCGCCACAGGGAGGGGTCCTGGGCACT i dasNov3.JH567899 I 10 C 0 e aotNan1.NW_018500483v1 1940555 24 + 11732439 I e cebCap1.NW_016107870v1 379305 13 + 1231380 I a score=112428.000000 s hg38.chr20_KI270871v1_alt 19063 15 + 58661 GGTGGCA-G-----------GTGC-CCG s panTro5.chr20 65588928 15 + 66533130 GGTGGCA-G-----------GTGC-CCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357283 15 + 62195757 GGTGGCA-G-----------GTGC-CCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768527 15 - 1017659 GGTGGCA-G-----------GTGC-CCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259028 15 - 110113093 GGTGGCA-G-----------GTGC-CCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978178 15 - 92844088 GGTGGCA-G-----------GTGC-CCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625699 15 + 96509753 GGTGGCA-G-----------GTGC-CCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081269 15 - 16982598 GGTGGCA-G-----------GTGC-CCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924617 15 - 3785965 GGTGGCA-G-----------GTGC-CCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596036 15 - 90373283 GGTGGCA-G-----------GTGC-CCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472210 15 + 6149316 GGTGGCA-G-----------GTGC-CCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704847 15 - 5823884 GGTGTCA-G-----------GTGC-CCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411128 17 + 159171411 GGTGGCG-G---C-------CTGTGGCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532172 16 + 16356641 GGTGGCG-G---C-------GTGC-GTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379318 17 + 1231380 GGTGGCG-G---T-------GTGCGTCG i cebCap1.NW_016107870v1 I 13 C 0 s otoGar3.GL873542 22156798 23 + 22939663 AGTGGCA-G---CAGGGCGGGTGG-GCG i otoGar3.GL873542 C 0 I 6 s mm10.chr2 181104858 19 + 182113224 GGTGGTG-AGGCT-------GGGC-CTG i mm10.chr2 C 0 C 0 s canFam3.chr24 47081041 15 + 47698779 CGCGGCG-G-----------GGTC-CGG i canFam3.chr24 C 0 I 3 s dasNov3.JH567899 97823 15 + 555560 -GTGGCCTG-----------GCGC-TCG i dasNov3.JH567899 C 0 I 14 e aotNan1.NW_018500483v1 1940555 24 + 11732439 I a score=1856137.000000 s hg38.chr20_KI270871v1_alt 19078 117 + 58661 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTTCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAA s panTro5.chr20 65588943 117 + 66533130 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTTCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357298 117 + 62195757 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTTCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCATAGAATCTCCAGGCCGACTGCGGA-GGGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768542 118 - 1017659 G-CG-G------CAGTA-CTGTACATGGGCACCGGTGACCGTTCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGAGGGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259043 118 - 110113093 GCCG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCGGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978193 117 - 92844088 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625714 117 + 96509753 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081284 117 - 16982598 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGTGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924632 117 - 3785965 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596051 117 - 90373283 G-CG-G------TGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGTGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472225 117 + 6149316 G-CG-G------TGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGATCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-GGGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704862 117 - 5823884 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCTGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCGGA-AGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411145 117 + 159171411 G-TG-G------CGGTACCTGTACATGGGCA-CGGTGACTGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCCGTGCGCGACAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCAGA-GGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532188 117 + 16356641 G-CG-G------CGGTACCTGTACATGGGCA-CGGTGACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCGGTGCGCGACAGGTTGGTGGCGTAGAACCTCCAGGCCGACTGCAGA-GGGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379335 117 + 1231380 G-CG-G------CGGTACCTGTACATGGGCA-CAGTGACGGTGCGCTCGTAGTACTGCCACGTGGAGCGCAGGTCCGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCAGA-GGGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1940579 117 + 11732439 G-CG-G------CGCTACCTGTACATGGGCA-CCGTGACCGTGCGCTCGTAATACTGCCACGTGGAGTGCAGGTCCGTGCGCGAGAGGTTGGTGGCGTAGAATCTCCAGGCCGACTGCAGA-GGGAG i aotNan1.NW_018500483v1 I 24 C 0 s otoGar3.GL873542 22156827 116 + 22939663 G-CG-C------CGGTACCTGTACATGGGCA-CGGTGACGGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGATCCGTGCGTGACAGGTTGGTGGCATAGAATCTCCAGGCGGCCTGAGGA-GGGA- i otoGar3.GL873542 I 6 C 0 s mm10.chr2 181104877 116 + 182113224 G-CG--------CAGTACCTGTACATGGGGA-CAGTGACTGTCCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCGGTGCGTGAGAGGTTAGTAGCATAGAATCTCCAGGCAGACTGCAGT-GGAAA i mm10.chr2 C 0 I 45 s canFam3.chr24 47081059 117 + 47698779 G-CGGG------CGGTACCTGTACATGGGCA-CCGTCACCGTGCGCTCGTAGTACTGCCACGTGGAGTGCAGGTCCGTGCGGGACAGGTTGGTGGCATAGAACCTCCAGGCCGACTGCAGG-GGGA- i canFam3.chr24 I 3 C 0 s dasNov3.JH567899 97852 123 + 555560 G-CG-GGGTGGCCGGTACCTGTACATGGGCA-CGGTGACCGTCCGCTCGTAGTACTGCCACGTGGAGCGAAGGTCCGTGCGCGACAGGTTGGTGGCGTAGAACCTCCAGGCAGACTGCAGG-GAGAG i dasNov3.JH567899 I 14 C 0 a score=42980.000000 s hg38.chr20_KI270871v1_alt 19195 5 + 58661 ---AGACA s panTro5.chr20 65589060 5 + 66533130 ---AGACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357415 5 + 62195757 ---AGACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768660 5 - 1017659 ---AGACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259161 5 - 110113093 ---AGACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978310 5 - 92844088 ---AGACG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625831 5 + 96509753 ---AGACG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081401 5 - 16982598 ---AGACG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924749 5 - 3785965 ---AGACG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596168 5 - 90373283 ---AGACG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472342 5 + 6149316 ---AGACG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704979 5 - 5823884 ---AGACG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411262 5 + 159171411 ---AGACA i calJac3.chr5 C 0 I 4 s saiBol1.JH378156 15532305 5 + 16356641 ---AGACG i saiBol1.JH378156 C 0 I 5 s cebCap1.NW_016107870v1 379452 5 + 1231380 ---AGACA i cebCap1.NW_016107870v1 C 0 I 28 s aotNan1.NW_018500483v1 1940696 5 + 11732439 ---AGACA i aotNan1.NW_018500483v1 C 0 I 4 s dasNov3.JH567899 97975 5 + 555560 CGGAG--- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181104993 45 + 182113224 I e canFam3.chr24 47081176 0 + 47698779 C e otoGar3.GL873542 22156943 0 + 22939663 C a score=92287.000000 s hg38.chr20_KI270871v1_alt 19200 28 + 58661 -----AGGCAGTTGGCGAGGGGCAGGCGGC-----GAG s panTro5.chr20 65589065 28 + 66533130 -----AGGCAGTTGGCGAGGGGCAGGCGGC-----GAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357420 28 + 62195757 -----AGGCAGTTGGCGAGGGGCAGGCGGC-----GAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768665 28 - 1017659 -----AGGCAGTTGGCGAGGGGCAGGCGGC-----GAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259166 28 - 110113093 -----AGGCAGTTGTCGAGGGGCAGGCGGC-----GAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978315 28 - 92844088 -----AGGCGGTTGTCAAGGGGCAGGTGGT-----GAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625836 27 + 96509753 -----AGGCGGTTGTCAAGGGGCAGGT-GT-----GAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081406 28 - 16982598 -----AGGCGGTTGTCAAGGGGCAGGTGGT-----GAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924754 28 - 3785965 -----AGGCGGTTGTCAAGGGGCAAGTGGT-----GAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596173 28 - 90373283 -----AGGCGGTTGGTGAGGGGCAGGTGGT-----GAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472347 28 + 6149316 -----AGGCGGTTGTCAAGGGGCAGGTGGT-----GAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4704984 28 - 5823884 -----AGGCGGTTGGCCAGGGGCAGGTGGT-----GAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411271 26 + 159171411 -----GGTCGGTGGGCCAGGGGT-GGCAGC-----AA- i calJac3.chr5 I 4 C 0 s saiBol1.JH378156 15532315 6 + 16356641 -----GGTCGG--------------------------- i saiBol1.JH378156 I 5 C 0 s aotNan1.NW_018500483v1 1940705 26 + 11732439 -----GGTCGGTCGGCCAGGGGT-GGCAGC-----GA- i aotNan1.NW_018500483v1 I 4 C 0 s otoGar3.GL873542 22156943 9 + 22939663 --------------------GACAGGTGG--------- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47081176 28 + 47698779 ---------AGTGGGCGAGGGTCAGACGCCTCCCGGA- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 97980 25 + 555560 GGTCAGTGCGTCTGGCC-GGGGCAGG------------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181104993 45 + 182113224 I e cebCap1.NW_016107870v1 379457 28 + 1231380 I a score=170551.000000 s hg38.chr20_KI270871v1_alt 19228 19 + 58661 GGGCGCGCCCAGGAGGGCC s panTro5.chr20 65589093 19 + 66533130 GGGCGCGCCCAGGAGGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357448 19 + 62195757 GGGCGCGCCCAGGAGGGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768693 19 - 1017659 GGGCGCGCCCAGGAGGGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259194 19 - 110113093 GGGCGCGCCCAGGACGGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978343 19 - 92844088 GGGTGCGCCCAGGAGGGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625863 19 + 96509753 GGGTGCGCCCAGGAGGGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081434 18 - 16982598 GGGT-TGCCCAGGAGGGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924782 19 - 3785965 GCGTGCGCCCAGGAGGGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596201 19 - 90373283 GGGAGCGCCCAGGAGGGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472375 19 + 6149316 GGGTGCGCCCAGGAGGGCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705012 19 - 5823884 GGGTGCGCCCAGGAGGGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411297 19 + 159171411 GGGCGCGCCCGAGAAGACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532321 11 + 16356641 --------CCGGGAGGGCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379485 19 + 1231380 GGGCACGCCCAGGAGGGCC i cebCap1.NW_016107870v1 I 28 C 0 s aotNan1.NW_018500483v1 1940731 19 + 11732439 GGGCGCACCCAGGAGGGCC i aotNan1.NW_018500483v1 C 0 C 0 s canFam3.chr24 47081204 19 + 47698779 ggccccgcccctgcgcgcc i canFam3.chr24 C 0 I 2564 s dasNov3.JH567899 98005 18 + 555560 GAAGGTGGCCAAGGAGCT- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181104993 45 + 182113224 I e otoGar3.GL873542 22156952 0 + 22939663 C a score=326319.000000 s hg38.chr20_KI270871v1_alt 19247 43 + 58661 GGGCGTGGAGGGAACGGGG-CAG-AG-------GGGACCCCCATGCTGTAGG s panTro5.chr20 65589112 43 + 66533130 GGGCGTGGAGAGAACGGGG-CAG-AG-------GGGACCCCCATGCTGTGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357467 43 + 62195757 GGGCGTGGAGGGAACGGGG-CAG-AG-------GGGACCCCCATGCTGTGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768712 45 - 1017659 GGGCGTGGAGGGAACGGGGACAGCAG-------GGGACCCCCATGCTGTGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259213 43 - 110113093 GGGCGTGGAGGGAACGGGG-CAG-AG-------GGGACCCCCATGCTGTGCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978362 50 - 92844088 AGGCATGGAGGGAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625882 50 + 96509753 AGGCATGGAGGGAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081452 50 - 16982598 AGGCATGGAGGGAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924801 50 - 3785965 AGGCATGGAGGGAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596220 50 - 90373283 AGGCATGGAGGCAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472394 50 + 6149316 AGGCATGGAGGGAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705031 50 - 5823884 AAGCATGGAGGGAATGGGG-CAG-AGAGGACCTGGGACTCCCATGCTGTCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411316 50 + 159171411 GGGCGCAGAGGGAACCAGG-CAG-AGGGGACCTGGGGCCCCCATGCTGTGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532332 36 + 16356641 AGGC--------------G-CAG-AGCGGACCCGGGACCCCCACGCTGTGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379504 36 + 1231380 GGGT--------------G-CAG-AGGGGACCTGGGACCCCCATGCTGTGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1940750 50 + 11732439 GGGCACAGAGGGAACGAGG-CAG-AGGGGACCTGGGACCCCCATGCTGTGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22156952 28 + 22939663 -----------------GT-CAG-TGAGGGCCG-----CCCTGCACCGTTGG i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 98023 36 + 555560 GGGCGCCGAGGCA--GGGG-CTG-GG------CGCAGACCCCAGAT------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181104993 45 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I a score=82759.000000 s hg38.chr20_KI270871v1_alt 19290 8 + 58661 CCAGGCAC s panTro5.chr20 65589155 8 + 66533130 CCAGGCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357510 8 + 62195757 CCAGGCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768757 8 - 1017659 CCAGGCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259256 8 - 110113093 CCAGGCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978412 8 - 92844088 CCCGGCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625932 8 + 96509753 CCCGGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081502 8 - 16982598 CCCGGCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924851 8 - 3785965 CCCGGCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596270 8 - 90373283 CCCGGCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472444 8 + 6149316 CCCGGCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705081 8 - 5823884 CCCGGCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411366 8 + 159171411 TCAGGCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532368 8 + 16356641 CCAGGCAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379540 8 + 1231380 CCGGGCAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1940800 8 + 11732439 CCAGGCAC i aotNan1.NW_018500483v1 C 0 I 14 s mm10.chr2 181105038 8 + 182113224 TCACCCAC i mm10.chr2 I 45 C 0 s dasNov3.JH567899 98059 5 + 555560 ---GGCCC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22156980 0 + 22939663 C a score=322092.000000 s hg38.chr20_KI270871v1_alt 19298 43 + 58661 TCAGGACTCTGGGCCAGCAGGCCAGGCCCCAGTGCTGCATCAG s panTro5.chr20 65589163 43 + 66533130 TCAGGACTCTGGGCCAGCAGGCCAGGCCCCAGTGCTGCATCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357518 43 + 62195757 TCAGGACTCTGGGCCAGCAGGCCAGGCCCCAGTGCTGCATCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768765 43 - 1017659 TCAAGACTCTGGACCAGCAGGCCAGGCCCCAGTGCTGCATCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259264 43 - 110113093 TCAGGACTCTGGGCCAGCAGGCCAGGCCCCAGTGCTGCATCAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978420 43 - 92844088 TCAGGACTCTGGGCCAGCGGGCTGGGCCCCAGTGCTGCATCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625940 43 + 96509753 TCAGGACTCTGGGCCAGCAGGCTGGGCCCCAGTGCTGCATCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081510 43 - 16982598 TCAGGACTCTGGGCCAGCAGGCTGGGCCCCAGTGCTGCATCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924859 43 - 3785965 TCAGGACTCTGGGCCAGCAGGCCGGGCCCCAGTGCTGCATCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596278 43 - 90373283 TCAGGACTCTGGGCCAGCAGGCCAGGCCCCAGTGCTGCATCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472452 43 + 6149316 TCAGGACTCTGGGCCAGCAGGCCGGGCCCCAGTGCTGCATCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705089 43 - 5823884 TCAGGACTCTGGGCCAGCAGGCCGGGCTCCAGTGCTGCATCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411374 42 + 159171411 AT-GGACTGTCCGCCAGCAGGCTGGCCCCCAGTGCTGCATCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532376 43 + 16356641 GTGGGACTGTCAGCCAGCAGGCCGGCCCCCAGTGCTGCATCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379548 42 + 1231380 GTGGGACTCTCGGCCAGCAGCCCGG-CCCCAGTGCTGCATCCG i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22156980 7 + 22939663 ------------------------GTCCCTA------------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181105046 29 + 182113224 ATAGAACTGTAGCCC--CATGCCTGTCCTCA------------ i mm10.chr2 C 0 C 0 s dasNov3.JH567899 98064 30 + 555560 CGAGGCCTCTG-----------TGAGCCTCAGTGCCATCCC-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940808 14 + 11732439 I e canFam3.chr24 47081223 2564 + 47698779 I a score=401359.000000 s hg38.chr20_KI270871v1_alt 19341 37 + 58661 CCCCACAGCCTCAGTTTACCCTCTGTAGGACAGACAG s panTro5.chr20 65589206 37 + 66533130 CCCCACAGCCTCAGTTTACCCTCTGTAGGACAGACAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357561 37 + 62195757 CCCCACAGCCTCAGTTTACCCTCTGTAGGACAGACAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768808 37 - 1017659 CCCCACAGCCTCAGTTTACCCTCTGTAGGACAGACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259307 37 - 110113093 CCCCACAGCCTCAGTTTACCCTCTGTAGGACAGACAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978463 37 - 92844088 CCCCACAGCCTCAGTTTACCCCCTGCCGGACAGACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95625983 37 + 96509753 CCCCACAGCCTCAGTTTACCCCCTGCCGGACAGACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081553 37 - 16982598 CCCCACAGCCTCAGTTTACCCCCTGCCGCACAGACAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924902 37 - 3785965 CCCCACAGCCTCAGTTTACCCCCTGCCGGACAGACAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596321 37 - 90373283 CCCCACAGCCTCAGTTTACCCCCTGCTGGACAGACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472495 37 + 6149316 CCCCACAGCCTCAGTTTACCCCCTGCCGGACAGACAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705132 37 - 5823884 CCCCACAGCCTCAGTTTACCCCCTGCCGGACAGACAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411416 37 + 159171411 CCCCACAGCCTCAGTTTACCCTCTGCAGGACAGACAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532419 37 + 16356641 CCCCATAGCCTCAGTTTACCCTCTGCAGGACAGACAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379591 37 + 1231380 CCCCACAGCCTCAGTTTACCCTCTGCAGGACAGACAG i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1940822 37 + 11732439 CCCCACAGCCTCAGTTTACCCTCTGCAGGACAGACAG i aotNan1.NW_018500483v1 I 14 I 2 s otoGar3.GL873542 22156987 22 + 22939663 --------CCCCACCCTACTCT-------ACCGACAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181105075 36 + 182113224 CCCCACAGCATCAGTTTAACCT-TGTAGTACAAGCAT i mm10.chr2 C 0 C 0 s dasNov3.JH567899 98094 19 + 555560 TCGAAAAGCC-------ACCC-------GATCG---- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47081223 2564 + 47698779 I a score=15300.000000 s hg38.chr20_KI270871v1_alt 19378 1 + 58661 G s panTro5.chr20 65589243 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357598 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768845 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259344 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978500 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626020 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081590 1 - 16982598 G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924939 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596358 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472532 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705169 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411453 1 + 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532456 1 + 16356641 G i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379628 1 + 1231380 G i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22157009 1 + 22939663 G i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181105111 1 + 182113224 G i mm10.chr2 C 0 C 0 s dasNov3.JH567899 98113 1 + 555560 G i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940859 2 + 11732439 I e canFam3.chr24 47081223 2564 + 47698779 I a score=102046.000000 s hg38.chr20_KI270871v1_alt 19379 28 + 58661 CAAGCCCGCTTGT------CAGAC-GGTGGGGCCT s panTro5.chr20 65589244 28 + 66533130 CAAGCCCGCTTGT------CAGAC-GGTGGGGCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357599 28 + 62195757 CAAGCCCGCTTGT------CAGAC-GGTGGGGCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768846 27 - 1017659 CAAG-CCGCTTGT------CAGAC-GGTGGGGCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259345 28 - 110113093 CAAGACCGCTTGT------CAGAC-GGTGGGGCCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978501 28 - 92844088 CAAGACCGCGTGT------CAGAC-GGTGGGGCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626021 28 + 96509753 CAAGACCGCGTGT------CAGAC-GGTGGGGCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081591 28 - 16982598 CAAGACCGTGTGT------CAGAC-GGTGGGGCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924940 28 - 3785965 CAAGACCGTGTGT------CAGAC-GGTGGGGCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596359 28 - 90373283 CAAGACCGCTTGT------CAGAC-GGTGGGGCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472533 28 + 6149316 CAAGACCGCGTGT------CAGAC-GGTGGGGCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705170 28 - 5823884 CAAGACCGCTTGT------CAGAC-GGTGGGGCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411454 1 + 159171411 -------------------------------G--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532457 1 + 16356641 -------------------------------G--- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22157010 26 + 22939663 CAGGACTGCTAGT------CAGGCTGGTGGGG--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181105112 29 + 182113224 -----CTGCCCACAGAAAGAAGCT-GGTGGGGTAT i mm10.chr2 C 0 C 0 s dasNov3.JH567899 98114 20 + 555560 -----CTGCCC--------TGGCT-GGCGCGGCC- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1940859 2 + 11732439 I e cebCap1.NW_016107870v1 379629 1 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=555725.000000 s hg38.chr20_KI270871v1_alt 19407 73 + 58661 GAAGGAGGGGAGCGGTT-GGGGCTTGACTCGGGGCCCTGAGCGAGCTCG-CAGGGAGGCT--GTGTTCTTTCCTT----TT s panTro5.chr20 65589272 73 + 66533130 GAAGGAGGGGAGCGGTT-GGGGCTTGACTCGGGGCCCTGAGCGAGCTCG-CAGGGAGGCT--GTGTTCTTTCCTT----TT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357627 73 + 62195757 GAAGGAGGGGAGCGGTT-GGGGCTTGACTCGGGGCCCTGAGCGAGCTCG-CAGGGAGGCT--GTGTTCTTTCCTT----TT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768873 74 - 1017659 GAAGGAGGGGAGCGGTTGGGGGCTTGACTCGGGGCCCTGAGCGAGCTCACCAGGGAGGCT--GTGTTCTTTCC-T----TT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259373 72 - 110113093 GAAGGAGGGGAGCGGTC-GGGGCTTGACTC-GGGCCCTCAGCAAGCTCG-CAGGGAGGCT--GTGTTCTTTCCTT----TT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978529 73 - 92844088 GAAGGAGGGGAGCGGTC-AGGGCTTGACTCGGGGCCCTCAGATAGTTCG-CAGGGAGGCT--GCGTTCTTTCCTT----TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626049 73 + 96509753 GAAGGAGGGGAGCGGTC-AGGGCTTGACTCGGGGCCCTCAGATAGTTCG-CAGGGAGGCT--GCGTTCTTTCCTT----TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081619 73 - 16982598 GAAGGAGGGGAGCGGTC-AGGGCTTGACTCGGGGCCCTCAGATAGTTCG-CAGGGAGGCT--GCGTTCTTTCCTT----TC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2924968 73 - 3785965 GAAGGAGGGGAGCGGTC-AGGGCTTGACTCAGGGCCCTCAGATAGTTCG-CAGGGAGGCT--GCGTTCTTTCCTT----TC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596387 73 - 90373283 GAAGTTGGGGAGTGGTC-AGGGCTTGACTCGGGGCCCTCAGATAGTTCG-CAGGGAGGCT--GCGTTCTTTCCTT----TC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472561 73 + 6149316 GAAGGAGGGGAGCGGTC-AGGGCTTGACTCAGGGCCCTCAGATAGTTCG-CAGGGAGGCT--GCGTTCTTTCCTT----TC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705198 73 - 5823884 GAAGGAGGGGAGCGGTC-AGGGCTTGACTCGGGGCCCTCAGATACTTCA-CAGGGAGGCT--GCGTTCTTTCCTT----TC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411455 72 + 159171411 GAAGAAGGGGAGCAGCC-GGGGCTTGACTCGGGGCCCAGAG-GAGCTCA-CAGGGAGGCA--ATGCTCGGTTCTG----TT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532458 72 + 16356641 GAAGAAGGGGAGCACCC-GGGGCCTGACTCGGGGCCCACAG-GAGCTCA-CAGGGAGGCC--ATGCTCTGTTCTG----TT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379630 72 + 1231380 GAAGAAGGGGAGCAGCC-GGGGCCTGACTCGGGGCCCACAG-GAGCTCA-CAGGGAGGCC--ATGCTCTGTTCTG----TT i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1940861 72 + 11732439 GAAGAAGGGGAGCAGCC-AGGGCTTGACTCAGGGCCCCCAG-GAGCTCA-CAGGGAGGCC--ATGGTCTGTTCTG----CT i aotNan1.NW_018500483v1 I 2 C 0 s otoGar3.GL873542 22157036 47 + 22939663 -----------ACAGTG-GGACCATGAC-----------------CTTG-TAGG--GTCT--GTGTACTTGTCCTGCCCTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181105141 62 + 182113224 GAAA--------------GATACTCTGCTTCTCGCTCAAAGTGAATCTG-CAGTGAGCCTTGGTGATCTTCCCTT----CT i mm10.chr2 C 0 I 134 s dasNov3.JH567899 98134 33 + 555560 --------GGAGAGGTG-GG--------------------------CCA-CGAGCCGGCG--GCCTCCTTC---------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47081223 2564 + 47698779 I a score=417499.000000 s hg38.chr20_KI270871v1_alt 19480 53 + 58661 CATGACTCTTACCTGGCCCCTGGCGGG--TATCACCTGTCCTGGGGGTT-ACCTTC s panTro5.chr20 65589345 53 + 66533130 CATGACTGTTACCTGGCCCCTGGCGGG--TATCACCTGTCCTGGGGGTT-ACCTTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357700 53 + 62195757 CATGACTGTTACCTGGCCCCTGGCGGG--TATCACCTGTCCTGGGGGTT-ACCTTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768947 51 - 1017659 CATGACTCTTA-CTGGCCCCTGGCGGG--TATCACCTGTCCT-GGGGTT-ACCTTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259445 53 - 110113093 CATGACTCTCACCTGGCCCCTGGCGGG--TATCGCCTGTCCTGGGGGTT-ACCTTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978602 54 - 92844088 CATGACTCTCGCCTGGCCCCTGGCGGT--TATCACCTGTCCTGGGTGTTAACCTTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626122 54 + 96509753 CATGACTCTCGCCTGGCCCCTGGCGGT--TATCACCTGTCCTGGGTGTTAACCTTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081692 54 - 16982598 CATGACTCTCGCCTGGCCCCTGGCGGT--TATCACCTGTCCTGGGTGTTAACCTTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925041 54 - 3785965 CATGATTCTCGCCTGGCCCCTGGCGGT--TATCACCTGTCCTGGGTGTTAACCTTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596460 54 - 90373283 CATGACTCTCGCCTGGCCCCTGGCGGT--TATCACCTGTCCTGGGTGTTAACCTTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472634 54 + 6149316 CACGACTCTCGCCTGGCCCCTGGCGGT--TATCACCTGTCCTGGGTGTTAACGTTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705271 54 - 5823884 CATGACTCTCACCTGGCCCCTGGCAGT--TATCACCTGTCCTGGGTGTTAACCTTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411527 52 + 159171411 CATGACTCTCACCTGGCTCCTGGCAGA--TATCACCTGTCATGGGGGTT-ACCTT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532530 40 + 16356641 CATGCCTCTCACCTGGCCCCCGGCAGG--CATCACCCATCAC-------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379702 53 + 1231380 CATGCCTCTCACCTGGCCCCTGGCAGG--TATCACCTGTCATGGGGGTT-ACCTTC i cebCap1.NW_016107870v1 C 0 I 8 s aotNan1.NW_018500483v1 1940933 53 + 11732439 CATGACTCTCACCTGGCCCCTGGCAGG--TATCACCTGTCATGGGGGTT-ACCTTC i aotNan1.NW_018500483v1 C 0 I 8 s otoGar3.GL873542 22157083 52 + 22939663 CACAGTCCTCACTGGACCTCATGTTG---CACCACCAGGGCCACGTGCA-TCCATC i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 98167 33 + 555560 ------TGTGGGCGGGCGCCACGTGGGGCAGCCACCCAC----------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181105203 134 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I a score=228750.000000 s hg38.chr20_KI270871v1_alt 19533 50 + 58661 CTGCCCTCCTGGTTGGGCC--CTGGGCAACCTGAGGCGCTGGGAGTATGGGT s panTro5.chr20 65589398 50 + 66533130 CTGCCCTCCTGGTTGGGCC--CTGGGCAACCTGAGGCGCTGGGAGTATGGGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357753 50 + 62195757 CTGCCCTCCTGGTTGGGCC--CTGGGCAACCTGAGGCGCTGGGAGTATGGGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 768998 50 - 1017659 CTGCCCTCCTGGTTGGGCC--CTGGGCAACCTGAGGCACTGGGAGTATGGGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259498 50 - 110113093 CTGCCCTCCCGGTTGGGCC--CTGGGCAACCGGAGGCGCTGGGGGTATAGGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978656 50 - 92844088 CTGCCCTCCCTGTTGGGCC--CTGGGCAACCTAAGGCACTGGGGGTATGGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626176 50 + 96509753 CTGCCCTCCCTGTTGGGCC--CTGGGCAACCTGAGGCACTGGGTGTATGGGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081746 50 - 16982598 CTGCCCTCCCTGTTGGGCC--CTGGGCAACCTGAGGCACTGGGTGTATGGGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925095 50 - 3785965 CTGCCCTCCCTGTTGGGCC--CTGGGCAACCTGAGGCGCTGGGGGTATGGGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596514 50 - 90373283 CTGCCCTCCCTGTTGGGCC--CTGGGCAACCTGAGGCGCTGGGGGTACGGGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472688 50 + 6149316 CTGCCCTCCCTGTTGGGCC--CTGGGCAACCTGAGGCGCTGGGGGTATGGGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705325 50 - 5823884 TCGCCCTCCCTGTTGGGCC--CTGGGCAACCTGAGGCACTGGGGGTATGGGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411579 9 + 159171411 CTGCCCGAC------------------------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532570 6 + 16356641 ---CCCGGC------------------------------------------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22157135 26 + 22939663 -CTCCCTGCCTGGTGGCCCAGCCAGGT------------------------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 98200 37 + 555560 CAGGCCCCCCCACTGGGAC--CTGGGA----TCAGGCATGGCA--------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181105203 134 + 182113224 I e aotNan1.NW_018500483v1 1940986 8 + 11732439 I e cebCap1.NW_016107870v1 379755 8 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=345415.000000 s hg38.chr20_KI270871v1_alt 19583 34 + 58661 AGG----GCCAGGGACCTCAGCCTCCAACCTCCCAGGG- s panTro5.chr20 65589448 34 + 66533130 AGG----GCCAGGGACCCCAGCCTCCATCCTCCCAGGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357803 34 + 62195757 AGG----GCCAGGGACCCCAGCCTCCATCCTCCCAGGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769048 34 - 1017659 AGG----GCCAGGGACCCCAGCCTCCATCCTCCCAGGG- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259548 34 - 110113093 AGG----GCCAGGGACCCCAGTCTCCATCCTCCCAGGG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978706 34 - 92844088 AGG----GCCAGGGACCCCAACCTCCATCCTCCCAGGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626226 34 + 96509753 AGG----GCCAGGGACCCCAACCTCCATCCTCCCAGGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081796 33 - 16982598 AGG----GCCAGGGACCCCAACCTCCATCCTCCCA-GG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925145 34 - 3785965 AGG----GCCAGGGACCCCAACCTCCATCCTCCCAGGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596564 34 - 90373283 AGG----TCCAGGGACCCCAACCTCCATCCTCCCAGGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472738 34 + 6149316 AGG----GCCAGGGACCCCAACCTCCATCCTCCCAGGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705375 34 - 5823884 AGG----GCCAGGGACCCCAACCTCCATCCTCCCAGGG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411588 33 + 159171411 AGG----GCCAGGGA-CCCAGCCGCCACCCTCCCAGGA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532576 34 + 16356641 AGG----GCCAGGGACCCCAGCCGCCATCCTCCCAGGG- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 379763 34 + 1231380 AGG----GCCAGGGACCCCAGCCGCCATCCTCCCAGGG- i cebCap1.NW_016107870v1 I 8 I 5480 s aotNan1.NW_018500483v1 1940994 34 + 11732439 AGG----GCCAGGGACCCCAGCCGCCATCCTCCCAGGG- i aotNan1.NW_018500483v1 I 8 I 5158 s otoGar3.GL873542 22157161 29 + 22939663 AGGCTTCCCCAGGGTCCC------TCAACATCTCA---- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 98237 35 + 555560 GAG----GCCCCAGGCACAAGCCCCCGTCGTCTCCTGCA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181105203 134 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I a score=370015.000000 s hg38.chr20_KI270871v1_alt 19617 62 + 58661 CGGGGACTCAGCCC-----GGCTC-------------------------------GGGGCATGAGCCTGTACGTCAGACTGAACCTCGCCTGG-CTGGA------- s panTro5.chr20 65589482 62 + 66533130 CGGGGACTCAGCCC-----GGCTC-------------------------------GGGGCATGAGCCTGTGTGTCAGACTGAACCTCGCCTGG-CTGGA------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357837 62 + 62195757 CGGGGACTCAGCCC-----GGCTC-------------------------------GGGGCATGAGCCTGTGTGTCAGACTGAACCTCGCCTGG-CTGGA------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769082 61 - 1017659 CGGGGACTCAGCCC-----GGCTC--------------------------------GGGCATGAGCCTGTGCGTCAGACTGAACCTCTCCTGG-CTGGA------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109259582 62 - 110113093 CGGGGACTCAGCCC-----GGCTC-------------------------------GGGGCATGAGCGTGTGGGTTAGACTGAACCTCGCCTGG-CTGGA------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978740 62 - 92844088 CGGGGACTCAGCCT-----GGCTC-------------------------------GGGGCATGAGCCTGTGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626260 62 + 96509753 CGGGGACTCAGCCT-----GGCTC-------------------------------GGGGCATGAGCCTGTGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081829 62 - 16982598 CGGGGACTCAGCCT-----GGCTC-------------------------------GGGGCATGAGCCTGTGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925179 62 - 3785965 CGGGGACTCAGCCT-----GGCTC-------------------------------GGAGCATGAGCCTGTGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596598 62 - 90373283 CGGGGACTCAGCCT-----GGCTC-------------------------------GGAGCATGAGCCTGCGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472772 62 + 6149316 CGGGGACTCAGCCC-----GGCTC-------------------------------GGAGCATGAGCCTGTGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705409 62 - 5823884 CGGGGACTCAGCCT-----GGCTC-------------------------------AGGGCATGAGCCTGTGGGTTAGACTGAACCTTGCCTGG-CTGGA------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411621 75 + 159171411 TGGTAGCCCAGCCCAGGGGGGCTTCCCCAGCAG----------------------GAGGCGGGAGCCTGCAGGTTAGGCTGAACC-CACCTGG-CCAGA------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532610 97 + 16356641 TGGTAGCCCAGCCCAGGGGGGCTTCCCCAGCAGGGGGTGGGGAGTCGGCCAGCACGGGGCGGGAGCCTGCCGGTCGGACTGAACC-CACCTGG-CCAGA------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22157190 31 + 22939663 ---------------------------------------------------------------AGCCTG-----CAGCATGCAATCCACGTGGTCTAGA------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 98272 59 + 555560 CGGTAACCCAGCCC-----A---C-------------------------------AGGGCTTGTGCAGGCAGG---GGCGGGATCT----TGG-CAAAATATGGGG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181105203 134 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=3330049.000000 s hg38.chr20_KI270871v1_alt 19679 524 + 58661 TTT-CCG-TTCTCTATGCC-----TTTG-TTTTGTTTTGCGGTGCTGAAATAGACATATCCT-------GAAGTTCACCATGttagccatgttaaagcgtgcacttcagtagcgcct-gcacacacagtgctgtgcgaccactgcccctatctaactccaca-cctcttcgtcgcccccaaataaaccccctcctacccccgacgttcagcaggcgctcctggtt---c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgccccgggcatttcctgccaagggcatcgcaagctgcacggccttccccgtctggctccctccactgagcgtgacgtcc------ccgcggcccatccgcgtcgtagcaagggg-cagcg--------cccgctcctcctgatagga------------ggatcgtatggataaatc----acatt-ccgttcatccatta--------atagacatttcagctgtttccactttttggttcctatgagtggtgctgctgtga-aatttgtgtgcacgtttttggttgaaggtctgtttt s panTro5.chr20 65589544 524 + 66533130 TTT-CCG-TTCTCTATGCC-----TTTG-TTTTGTTTTGCGGTGCTGAAATAGacatatcct-------gaagttcaccatgttagccatgttaaagcgtgcacttcagtagcgcct-gcacacacagtgctgtgcgaccactgcccctatctaactccaca-cctcttcgtcgcccccaaacaaaccccctcctacccccgacgttcagcaggcactcctggtt---c---ctggtcccccaggccctggccaccgccagggagtac----ggggctccacggacttccccgccccgggcatttcctgccaagggcatcacaagctgcacggccttccccgtctggctccctccactgagcgtgacgtcc------ccgcggcccatccgcgtcgtagcaagggg-cagcg--------cccgctcctcctgatagga------------ggatcgtatggataaatc----acatt-ccgttcatccatta--------atagacatttcagctgtttccactttttggttcctatgagtggtgctgctgtga-aatttgtgtgcacgtttttggttgaaggtctgtttt i panTro5.chr20 C 0 C 0 s panPan2.chr20 61357899 524 + 62195757 TTT-CCG-TTCTCTATGCC-----TTTG-TTTTGTTTTGCGGTGCTGAAATAGacatatcct-------gaagttcaccatgttagccatgttaaagcgtgcacttcagtagcgcct-gcacacacagtgctgtgcgaccactgcccctatctaactccaca-cctcttcgtcgcccccaaataaaccccctcctacccccgacgttcagcaggcactcctggtt---c---ctggtcccccaggccctggccaccgccagggagtac----ggggctccacggacttccccgccccgggcatttcctgccaagggcatcgcaagctgcacggccttccccgtctggctccctccactgagcgtgacgtcc------ccgcggcccatccgcgacgtagcaagggg-cagcg--------cccgctcctcctgatagga------------ggatcgtatggataaatc----acatt-ccgttcatccatta--------atagacatttcagctgtttccactttttggttcctatgagtggtgctgctgtga-aatttgtgtgcacgtttttggttgaaggtctgtttt i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769143 516 - 1017659 TTT-CCGTTTCTCTATGCC-----TTTGTTTTTGTTTTGCGGTGCTGAAATAGACATATCCt-------gaagttcaccatgttagccatgttaaagcgtgcacttcagtagcgcct-gcacacacagtgctgtgcgaccactgcc-----ctaactccaca-cct-ttcgtcgcccccaaataaaccccctcctacccccga-attcagcaggcactcccggtt---c---ctggtccc---ggccctggccaccgccagggtgtac----ggggctccacggac-tccccgccccgggcatttcctgccaagggcatcgcaagctgcacggccttccctgtctgtctccctccactgagcgtgacgt-c------ccgcggcccatccgcgtcgtagcaaggggccagcg--------cccgctcctcctaatagga------------ggatcgtatggataaatc----acattcccgttcatccatta--------atagacatttcagctgttttcactttttggttcctatgagtggtgctgctgtga-aatttgtgtgcgcgtctttggttgaaggtctgtttt i gorGor5.CYUI01015750v1 C 0 I 1 s nomLeu3.chr13 109259644 517 - 110113093 TTT-CCG-TTCTCTATGCC-----TTTG-TGTTGTTTTGCGGTGCtgaaatagacatatcct-------aaagttcaccatgttagccattttaaagcgtgcacttcagtagcacct-gcacacacagtgctgtgcgaccactgccc----ctaactccaca-cctcttcgtcgcccccaaataaa-cccctcctacccccgacgttcagcaggcactcctggtt---c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgccctgggtgtttcctgccaagggcatcgtaagctgcacggccttccctgtccggctccctctgttgatcgggaagtcc------ccgcggcccatctgcgtggtagcaagggg-cagcg--------cccgctcctcctcatagga------------ggatcgtatggataaatt----acatt-ccgttcatccatta--------atagacatttcggctgtttccactttttggttcctatgagtggtgctgctgtga-aatttgtgtg--cgtttttggttgaaggtctgtttt i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91978802 524 - 92844088 TTT-CCA-TTCTCTATGCCTTTGTTTTG-Ttttgttttgcggtgctgaaatagacatatcct-------aaagttcaccattttagccattttaaagtgtgcgcttcagtggcacct-gcacacgcagtgctgcgtgaccactgcccctatctaactccaca-cttcttcgtcgcccccaaagaaaccccctactaccccccacgtccagcaggcactcctggttc--c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgccccgggcgtttcctgccaaggacatcgcaagctgcacggccttccctgtccggctccctccgctgagcgtgacatcc------ccggggcccatcctcgtcgtagcaagggg-cagcg--------cccgctcctcctcatggga------------ggatcatatggataaatc----atatt-ccgttcatccatta--------atagacgtttcagctgtgtccactttttggttcctatgagtggtgctgctgtga-catttgtgtgcacgt-gttggttgaaggtct----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626322 524 + 96509753 TTT-CCA-TTCTCTATGCCTTTGTTTTG-TTTTGTTTTGCGGTGCtgaaatagacatatcct-------aaagttcaccattttagccattttaaagtgtgcgcttcagtggcacct-gcacacgcagtgctgcgtgaccactgcccctatctaactccaca-cttcttcgtcgcccccaaagaaaccccctactaccccccacgtccagcaggcactcctggttc--c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgccccgggcgtttcctgccaaggacatcgcaagctgcacggccttccctgtccggctccctccgctgagcgtgacatcc------ccggggcccatcctcgtcgtagcaagggg-cagcg--------cccgctcctcctcatggga------------ggatcatatggataaatc----atatt-ccgttcatccatta--------atagacatttcagctgtgtccactttttggttcctatgagtggtgctgctgtga-catttgtgtgcacgt-gttggttgaaggtct----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16081891 524 - 16982598 TTT-CCA-TTCTCTATGCCTTTGTTTTG-Ttttgttttgcggtgctgaaatagacatatcct-------aaagttcaccattttagccattttaaagtgtgcgcttcagtggcacct-gcacatgcagtgctgcgtgaccactgcccctatctaactccaca-cttcttcgtcgcccccaaagaaacctcctactaccccccaagtccagcaggcactcctggttc--c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgccccgggcgtttcctgccaaggacatcgcaagctgcacggccttccctgtccggctccctccgctgagcgtgacatcc------ccagggcccatcctcgtcgtagcaagggg-cagcg--------cctgctcctcctcatggga------------ggatcatatggataaatc----atatt-ccgttcatccatta--------atagacatttcagctgtgtccactctttggttcctatgagtggtgctgctgtga-catttgtgtgcacgt-gttggttgaaggtct----- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925241 519 - 3785965 TTT-CCA-TTCTCTATGCC-----TTTG-TTTCGTTTTGCGgtgctgaaatagacacatcct-------aaagttcaccattttagtcattttaaagtgtgcgcttcagtggcacct-gcacacgcagtgctgcgtgaccactgcccctatctaactccaca-cttcttcgtcgccgccaaagaaaccccctactaccccccacgtccagcaggcactcctggttc--c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgccctgggcgtttcctgccaaggacatcgcaagctgcacggccttccctgtccggctccctccgctgagcgtgatgtcc------ccgaggcccatcctcgtcgtagcaagggg-cagcg--------cctgctcctcctcatggga------------ggatcatatggataaatc----atatt-ccgttcatccatta--------atagacatttcagctgcgtccactttttggttcctatgagtggtgctgctgtga-catttgtgtgcacgt-gttggttgaaggtct----- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89596660 524 - 90373283 TTT-CCA-TTCTCTATGCCTTTGTTTTG-TTTCGTTTTGCGGTGCtgaaatagacatatcct-------aaagttcaccattttagccattttaaagtgtgcgcttcagtggcacct-gcacacgcagtgctgcgtgaccactgcccctatctaactccaca-cttcttcgtcgcccccaaagaaaccccctactaccccccacgtccagcaggcactcctggttc--c---ctggtcccccaggccctggccaccaccagggtgtac----cgggctccacggacttccccgccctgggcgtttcctgccaaggacatcgcaagctgcacggccttccctgcccggctccctccgctgagcgtgacatcc------ccgaggcccatcctcgttgtagcaagggg-cagcg--------cccgctcctcctcatggga------------ggatcacatggataaatc----atatt-ccgttcatccatta--------atagacatttcagccgtgtccactttttggttcctatgagtggtactgctgtga-catttgtgtgcacgt-gttggttgaaggtct----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5472834 470 + 6149316 TTT-CCA-TTCTCTATGCC-----TTTG-TTTCGttttgcggtgctgaaatagacacatcct-------aaagttcaccattttagccattttaaagtgtgcgcttcagtggcacct-gcacacgcagtgctgcgtgaccactgcccctatctaactccaca-cttcttcgtcgcccccaaagaaaccccctactaccccccacgtccagcaggcactcctggttc--c---ctggtcccccaggccctggCCACAGCCAGGGTGTAC----GGG-------------------------------------------------GCTGCACggccttccctgtccggctcccatcgccgagcgtggcgtcc------ccgaggcccatcctcgtcgcagcaagggg-cagcg--------cccgctccccctcatggga------------ggatcacatggataaatc----atatt-ccgttcatccatta--------atagacatttcagctgtgtccactttttggttcctatgagtggtgctgctgtga-catttgtgtgcacgt-gttggttgaaggtct----- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705471 516 - 5823884 TTT-CCA-TTCTCTATGCC-----TTTG-TTTTGTTTTGCGGTGCTGAaatagacatatcct-------aaggttcaccactttagccattttaaagtgtgcacttcagtggcacct-gcatacgcagtgctgtgtgaccactgcccctatctaatgccaca-cttcttcgtcgccccc-aagaaaccccctactactccccacgtccagcaggcactcctggttc--c---ctggtcccccaggccctggccaccgccagggtgtac----ggggctccacggacttccccgtcctgggcgtttcctgccaaggacatcgcaagctgcaaggccttccctgtctggctccctctgctgagcatgacatcc------ttgagggccatcctcgtagtagcaagggg-cagcg--------cccgctcctcctcatagga------------ggatcatatggatcaatc----atatt-ccgttcatccatta--------atagacatttcagccgtgtccactttttggtt-ctatgagtggtgctgctgtga-aatttgtgtgcacat-tgtggttgaa-gtct----- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57411696 477 + 159171411 TTTCCCG-TTGTCTATGCC-----TTTG-CTTTGttttgcggtgctgaaatatgtgtatctcttatcacaaagctca-cattttagctgttttgaggtgtgcattccagcagcacct-gtattcacagtattgag--accactatcactattcaactcagcagcctcttcatca-ccccaaagaaaccccctaccatcgtacacactaagcaggcactcctggtcc--c---ccagccccccaggtcccagccaccgccagggtgctcgctggggcctccatggac-ttcccttcccaggcact--------------------------------tcCCCTGCCGGCTCCCTCCACCGA----------------------GCATGTCC------TAGC--GCGT-CAGGG--------CCCGCTCCTCCTCGCAGGA------------GGACTGTATGGGTGAATC----AGGCt-ctgttcatccatta--------atgagcatttcggctgtttctactttttggctcctgtgagtgctgctgctgtga-aacacgtgtgcacgtttttggatgaagatctgtttt i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15532707 492 + 16356641 TTTCCCG-TTCTCTGTGCC-----TTTG-------TTTGCGGTGCGGAAAGACGTGTATCTCATTTcagaaagctcaccatgtgagccattttgaggcgtgcatttcagtagcacct-gtattcacagtgctgtgacaccaccatcactactcagctcagcaacctcttcgccgcccccaaagaaaccccctaccgccatacacactaagcaggcactcctgg--c--c---ccggccccccaggccccggcccctgccagggtgctcgctggggtctccacggac-tcccctCCCCGGGCGCTTCC-----------------------------TCCCCCGCCGGCTCCCTCCACCGAGCGGGCGGGTC------CCAGCGCGTGTCC------TAGC--GCGT-CAGCG--------ACCGCGCCTCCTCGTAGGA------------GGattgtctgggtgaatc----acgct-ctgttcatccatta--------acgagcatttcggctgtttctacgttttggctgccgtgagtgctgctgctgtga-aacacgtgtgcacgtttttggctgaagatctgtttt i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22157221 484 + 22939663 TTT-CTG-T--CTTACACT-----TTTT-TTTCCCTTT--GGCACTCaaatgcacataacat-------aaaatgcacagctttaaacactttaaagtgtgtgatgcagaggcgtctcatcccttcgatgctgtgc-accatcactgctacctgattccatgacttgctcatcatcccaaagga---cccccgacacagcaagtggtcactaaccaccct--------c---ct--ctccccaactcctggcaactgccagttcccac----tagcccctccggatttccctgtccgtgg----------------aatcacacagcacgtggccttctct-cctagctgttcttgctgagcatg---tcc------tcagagttcatccagattgtggcatgtaa-aagc---------ctcattccttctc-------------------------atggatacagc----acatt-ttgttgacctattaattcactgataaccatttgggttgttcccactttttggctattatgaatagtgctgctacaa-aatgtgtgtata-gtatttggctgaagacttgtttt i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181105337 488 + 182113224 TTC-CCA-TTCTGTATACTTT---TTTT-CTTTGTGTATAGTCATCATGatccacacaacat-------gaagtctaccattttgactcctttaca----------------------gtacacatagcattgtgtgaccacagcaacaatctatcccca-g-tgtctt----acccttagggagg-------caggcccacacataaagtagacacttctgttctgac---ct--cccgccaaaccctggtagcatc---agtcttt----cagtctctacggatttgcctgttttggaaatttcctatcatggaatctcttgattgtatggtctgcct--gttagtgtcttgcatggagggaaaggccctggaagctgaggattgtgcacattgt-gcactgag-ctgcg--------tc-------cctttgaggactgaataacacttgattatacagacagatcacatacatt-ttgaccatccacca--------gtgagcat---agct-cacacatattttgactgttatg-----------tgtac-tataaacatggaggattttggctaatcacctgtttt i mm10.chr2 I 134 I 2710 s dasNov3.JH567899 98331 452 + 555560 TCC-CCA-ACCCATGTCCC-CAGTTTTG-GGAGGTTTTGGGGGGCAAGGAAATTCACATAAT-------GTAG--------------------AAAGCGTTCAGTT-------------------cagtgctgtgcaaccacctccagtatccagtcccaaaacaagctcatca--accagaggaacc-----ctgccccctccaccgagcaggcgctgcccactc--ctcgccgcccccgccagcccaggcggctgccaacctg-------ctggctct---ggattcactgctctggccattccacgcagatgaatcagacagct----gaccttc---gtcaggcttctctccctcagcagtgtcttc------ACA----CCTGCCACGCGGCAGCTCACGG-CAGCATGCCGTTCCCTTCCACCCTGCACAGAA------------CGCCCGCGTGGGGAGATC-------CG-TTGTTCATCCACAC-------------------CGCAGTGCCCGTCCCTGGGCGGCTG-gagcagcgctgcggggagcactgctgtgcaagc-tctgctct------------ i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=641973.000000 s hg38.chr20_KI270871v1_alt 20203 131 + 58661 caattcttttgtgtctgtctatacctagag-gtagaatggccgggtcacgtgac-aactccacgtttacgaactttctgagaaacaaccgaactg--ctttccagggtgactgcatcg--ctacattcctaccag-------ca s panTro5.chr20 65590068 132 + 66533130 caattcttttgtgtctgtctatacctagag-gtagaatggctgggtcacgtgataaactccacgtttacgaactttctgagaaacaaccgagctg--ctttccagggtgactgcatcg--ctacattcctaccag-------ca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358423 132 + 62195757 caattcttttgtgtctgtctatacctagag-gtagaatggctgggtcacgtgataaactccacgtttacgaactttctgagaaacaaccgagctg--ctttccagggtgactgcatcg--ctacattcctaccag-------ca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769660 132 - 1017659 caattcttttgtgtccgtctatacctagag-gtagaatggctgggtcacgtgataaactccacgtttacgaactttctgagaaacaaccgaactg--ctttccagggtgactgcatcg--ctacattcctaccag-------ca i gorGor5.CYUI01015750v1 I 1 C 0 s nomLeu3.chr13 109260161 125 - 110113093 caattcttttgt----gtctatacctagag-gtagaatggctgggtcacgtggt-aactccacg-ttacgaactttctgagaaacaa-cgaactg--ctttccagggtggccgcatcg--ttacattcctaccag-------ca i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91979326 100 - 92844088 -------------------------------gtagaacggctgggctacgggtt-aaccccacgtttccgaactttctgagaaataa-caaactg--ctttcccgggtggccgcatcg--ttacattcctcccag-------ta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626846 100 + 96509753 -------------------------------gtagaacggctgggctacggggt-aaccccacgtttccgaactttctgagaaataa-caaactg--ctttcccgggtggccgcatcg--ttacattcctcccag-------ta i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16082415 100 - 16982598 -------------------------------gtagaacggctgggctacggggt-aaccccacgtttccgaactttctgagaaataa-caaactg--ctttcccaggtggccgcatcg--ttacattcctcccag-------ta i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925760 100 - 3785965 -------------------------------gtagaacggctgggctacggggt-aaccccacgtttccgaactttctgagaaatga-caaactg--ctttcccgggtggccgcattg--ttacattcccaccag-------ca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89597184 101 - 90373283 -------------------------------gtagaacggctgggctacgcggt-aaccccacgtttccgaactttctgagaaacaaccaaactg--ctttcccgggtggccgcatcg--ttacattcctaccag-------ca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5473304 100 + 6149316 -------------------------------gtagaacggctggactacggggt-aaccccacgtttccgaactttctgagaaataa-caaaccg--ctttcccgggtggccgcatcg--ttccattcctaccag-------ca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4705987 101 - 5823884 -------------------------------gtagaatggctgggctacgtggt-aactccacgtttccgaactttctgagaaaccaccaaactg--ctttccagggtggccgcatcg--tcacattcctaccag-------ca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57412173 111 + 159171411 caattattttgt----gtctatacctggag-gcagaattgctgggtcacatgat-aactccatgtttgtcaactttttgagaaacaatca------------------agcttcgtca--tcacattcctaccag-------ca i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15533199 124 + 16356641 caattactttgt----gtctatacctcaag-gtagaattgctgggtcacgaggt-aactc---gtttatcagctttctgagaaacaatcaaactg--gtttgcagggtagctgcgtca--ttacattcctaccgg-------ca i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22157705 132 + 22939663 caattattttgt----gtctatacctagga-atagaattggtaggtcat---at-aaatccatattt---aactttttgaggaatcactaaattgtttttttcacagtggctgcatcattttacaatcctaccagcaacgtaca i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 98783 125 + 555560 cagcaccttctcagctctctggggcatgcgcgtagga---acaggacacatggt-aattctacgct----gacttcctgaggggccgccagacta--ctgtccttagttctgattttc--ccacaccctcactgg-------ca i dasNov3.JH567899 C 0 I 14603 e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=207638.000000 s hg38.chr20_KI270871v1_alt 20334 45 + 58661 ggggg-ggcggtgtccacacatcctca-ctaCGCT-GATTTGCCATTT s panTro5.chr20 65590200 45 + 66533130 ggggg-cgcgatgtccacacatcctca-ctacgct-gattttccattt i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358555 45 + 62195757 ggggg-cgcgatgtccacacatcctca-ctaCGCT-GATTTTCCATTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769792 45 - 1017659 ggggc-cccgatgtccacacatcctca-ctacgct-gattttccattt i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260286 45 - 110113093 ggggg-cccgatgtccacacatcctca-ctacact-gattttccattt i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91979426 42 - 92844088 ggggg-cccagtttccacacatc-----ctAAGCTTGGTTTCCCATTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626946 42 + 96509753 ggggg-cccagtttccacacatc-----ctACGCTTGGTTTCCCATTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16082515 42 - 16982598 ggggg-cccagtttccacacatc-----ctacgcttggtTTCCCATTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925860 42 - 3785965 ggggg-cccagtttccacacatc-----ctacacttggtTTCCCATTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89597285 42 - 90373283 ggggg-cccagtttccacacatc-----ctacacttggttttccattt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5473404 42 + 6149316 ggggg-cccagtttccacacgtc-----ctacacttggtTTCCCATTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4706088 42 - 5823884 ggggg-cccaatttccacgcatc-----ctacactcggtttcccattt i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57412284 47 + 159171411 aggggtccccattgctccacatcctcaccgacact-gactgtccattt i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15533323 43 + 16356641 aggggtccccatttctccacatcctctccgacact-gattttcc---- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22157837 46 + 22939663 agagt-tccaatttcttcacatcctcactaatact-tacttctcgttt i otoGar3.GL873542 C 0 I 7087 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=626446.000000 s hg38.chr20_KI270871v1_alt 20379 121 + 58661 GCTAACATGTCAGCCGCCCTggcctggcgcagaggctca------------caacaccttggaggctgaagcaggtggatcgcctgagcccaggagttcaagcccagcctgggaaacatggcaaaaccctgcc------------------ s panTro5.chr20 65590245 58 + 66533130 gctaacatgtt---------------------------------------------------------------------------agcccaggagttcaagcccagcctgggaaacatggcaaaaccctgcc------------------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358600 58 + 62195757 GCTAACATGTT---------------------------------------------------------------------------agcccaggagttcaagcccagcctgggaaacatggcaaaaccctgcc------------------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769837 121 - 1017659 gctagcacgttagccaccctggCCTGGCGCAGAGGCtcg------------caacaccttggaggctgaagcaggtggatcgcctgagcccaggagttcaagcccagcctgggaaacatggcaaaaccctgcc------------------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260331 121 - 110113093 cttaacatgttagccaccctggcttggcgtggagGCtca------------caacaccttggaggctgaagcaggtggatcgtctgaccccaggagttcaagcccagcctgggaaacatggcaaaaccctgcc------------------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91979468 121 - 92844088 GTTAACACGTCAGCCACCCTggccaggcgccgcggctcg------------ccgcaccttggaggctgaggcaggtggattgtctgagcccaggagttcaagaccagcctgggaaacatggcaaaacgctgcc------------------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95626988 116 + 96509753 GTTAACACGTCAGCCACCCT-----GGCGCCGAGGCTCG------------CCgcaccttggaggctgaggcaggtggattgtctgagcccaggagttcaagaccagcctgggaaacatggcaaaacgctgcc------------------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16082557 121 - 16982598 GTTAACACGTCAGCCACCCTggccaggcgccgaggctcg------------ccgcaccttggaggctgaggcaggtggattgtctgagcccaggagttcaagaccagcctgggaaacatggcaaaacgctgcc------------------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2925902 121 - 3785965 GTTAACACGTCAGCCACCCTggccaggcgccaaggctcg------------ccgcaccttgggggctgaggcaggtggatcgtctaagcccaggcgttcaagaccagcctgggaaacatggcaaaacgctgcc------------------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89597327 121 - 90373283 gttaacacgttagccaccctggccaggcgccgaggctcg------------ccgcaccttggaggctgaggcaggtggatcgtctgagcccaggagttcaagaccagcctgggaaacatggcaaaacgctgcc------------------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5473446 118 + 6149316 GTTAACACGTCAGCCACCCTggccaggcg-cgaggctcg------------ccgcaccttggaggctgaggcaggtggatcgtctgagcccaggcgttcaagatcagcctgggaaac--ggcaaaacgctgcc------------------ i manLeu1.NW_012104365v1 C 0 I 976 s colAng1.NW_012114444v1 4706130 121 - 5823884 gttaaCATGTGAGCCCCCCTggccaggcgccgaggctcg------------ccacaccttggaggctgaggcaggtggatcatctgagcccaggcgttcaagaccagcctgggaaacatggcaaaacgctgcc------------------ i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57412331 149 + 159171411 gttaaactgttagccacccaggctaggcccgaaggctcatgcatgtaatcccaacaccttggaggctgaggcaggtggatcgcctgagcccaggagttcaataccagcctgggaagcatggcaaaaccctgcaaataaaataacgtaa--c i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15533366 143 + 16356641 --------gttagccaccccagccaggcccagaggctcatgcctgtaatcccagcaccttggaggctgaggcaggtggatcgcctgagcccaggagttcgataccagcctgggaagcatggcaaaaccctgcaaataacataacataaatc i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I a score=-5024.000000 s hg38.chr20_KI270871v1_alt 20500 1 + 58661 -t s panTro5.chr20 65590303 1 + 66533130 -t i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358658 1 + 62195757 -t i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769958 1 - 1017659 -t i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260452 1 - 110113093 -t i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91979589 1 - 92844088 -t i rheMac8.chr10 C 0 I 668 s macFas5.chr10 95627104 1 + 96509753 -t i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16082678 1 - 16982598 -t i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2926023 1 - 3785965 -t i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89597448 1 - 90373283 -t i chlSab2.chr2 C 0 I 1 s colAng1.NW_012114444v1 4706251 1 - 5823884 -t i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57412480 1 + 159171411 a- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15533509 1 + 16356641 a- i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e manLeu1.NW_012104365v1 5473564 976 + 6149316 I a score=138853.000000 s hg38.chr20_KI270871v1_alt 20501 39 + 58661 ----------tt---------------actt--------------aaaacaaaaaattagccagatatggtggtgcac s panTro5.chr20 65590304 39 + 66533130 ----------tt---------------actt--------------aaaacaaaaaattagccagatatggtggtgcac i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358659 39 + 62195757 ----------tt---------------actt--------------aaaacaaaaaattagccagatatggtggtgcac i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769959 38 - 1017659 ----------tt---------------actt--------------aaaacaaaaaattagccagatatggtggtg-ac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260453 39 - 110113093 ----------tt---------------actt--------------aaaacaaaaaattagccagatatggtggtgcac i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95627106 46 + 96509753 ----------tc---------------ctttaaa-------aaaaaaaaaaaaaaattagccaggtatggcggcgcac i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16082680 42 - 16982598 ----------tc---------------cttt-----------aaaaaaaaaaaaaaTTAGCCAGGTATGGCGGCGCac i macNem1.NW_012014244v1 I 1 I 618 s cerAty1.NW_012001373v1 2926025 43 - 3785965 ----------tc---------------cttt----------aaaaaaaaaaaaaaattagccaggtatggcggcgcac i cerAty1.NW_012001373v1 I 1 I 615 s chlSab2.chr2 89597450 43 - 90373283 ----------tc---------------cttt----------aaaaaaaaaaaaaaaTTAGCCAGGTATGGCGGTGCac i chlSab2.chr2 I 1 I 628 s colAng1.NW_012114444v1 4706253 41 - 5823884 ----------tc---------------cttt------------aaaaaaaaaaaaaTTAGCCAGGTATGGCGGTGCac i colAng1.NW_012114444v1 I 1 I 615 s calJac3.chr5 57412481 78 + 159171411 taacataaaataaataataaataaaataattaaaaataaataaaataaaataaaaattagccgggtatggtagtgcac i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15533510 63 + 16356641 taaaataaaata---------------atttaaaaataaataaaataaaataaaaattagccaggtatgctagtgcac i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e manLeu1.NW_012104365v1 5473564 976 + 6149316 I e rheMac8.chr10 91979590 668 - 92844088 I a score=6384.000000 s hg38.chr20_KI270871v1_alt 20540 3 + 58661 acc s panTro5.chr20 65590343 3 + 66533130 acc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358698 3 + 62195757 acc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 769997 3 - 1017659 acc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260492 3 - 110113093 acc i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95627152 2 + 96509753 -cc i macFas5.chr10 C 0 I 603 s calJac3.chr5 57412559 3 + 159171411 acc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15533573 3 + 16356641 act i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e manLeu1.NW_012104365v1 5473564 976 + 6149316 I e colAng1.NW_012114444v1 4706294 615 - 5823884 I e chlSab2.chr2 89597493 628 - 90373283 I e cerAty1.NW_012001373v1 2926068 615 - 3785965 I e macNem1.NW_012014244v1 16082722 618 - 16982598 I e rheMac8.chr10 91979590 668 - 92844088 I a score=240394.000000 s hg38.chr20_KI270871v1_alt 20543 158 + 58661 tgtagtcccagttactcaggaggctaaggtgg--gaggatcgcttgaacctggcaggtcgaggctgcagtgagccaagatcacac-aactgcactccagcctgggcaagagagcaagtccctatctc------aacaaaaaaaaaaaaaaaaGTTGG---------CCATCCTAAC s panTro5.chr20 65590346 162 + 66533130 tgtagtcccagttactcaggaggctaaggtgg--gaggattgcttgaacctgggaggtcgaggctgcagtgagccaagatcacac-aactgcactccagcctgggcaagagagcaagtccctatctcaaaa--aaaaaaaaaaaaaaaaaaagttgg---------ccatcctaAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358701 163 + 62195757 tgtagtcccagttactcaggaggctaaggtgg--gaggattgcttgaacctgggaggtcgaggctgcagtgagccaagatcacac-aactgcactccagcctgggcaagagagcaagtccctatctc----------aaaaaaaaaaaaaaaGTTAGGCCATCCTAACATCCTAAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 770000 152 - 1017659 tgtagtcccagttactcaggaggctaaggtgg--gaggatcgcttgaacctgggaggtcgaggctgcagtgagccaagatcacacaaactgcact-cagcctgggcaagagagcaagt-cctatctc-----------aaaaaaaaaaaaaaTTTGG---------CCATCCTAAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260495 164 - 110113093 tgtagtcccagctaatcaggaggctaaggtgg--gaggatcgcttgaacctgggaggtcgaggctacagtgagccaagatcacgc-aactgcactccagcctgggcaacagagcaagaccctgtctcaaaaagaaaaaaaaagaaaaaaaaagTTGG---------CCACCCTAAC i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57412562 154 + 159171411 tgtagtcccagctactcaggaggctaaggtgg--gaggatggcttaaacccgggaggtcgaggctgcagtgagccaagatcacgc-cactgcactccagcctgggtggcagagcaagaccctgtctc----------aaaaaaaaaaaaaatcttgg---------ccatcctaac i calJac3.chr5 C 0 I 5822 s saiBol1.JH378156 15533576 154 + 16356641 tgtagtcccagctactcaggaggctaagtgagtagagaatcgcttaaacccgggaggtcgaggcttcagtgagccaagatcatgc-cactgcactccagcctggccgacagagcaagaccctgtctc----------aaaaaaaaaaaaa--cttgg---------ccatcctaac i saiBol1.JH378156 C 0 I 5064 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e manLeu1.NW_012104365v1 5473564 976 + 6149316 I e colAng1.NW_012114444v1 4706294 615 - 5823884 I e chlSab2.chr2 89597493 628 - 90373283 I e cerAty1.NW_012001373v1 2926068 615 - 3785965 I e macNem1.NW_012014244v1 16082722 618 - 16982598 I e macFas5.chr10 95627154 603 + 96509753 I e rheMac8.chr10 91979590 668 - 92844088 I a score=955959.000000 s hg38.chr20_KI270871v1_alt 20701 1121 + 58661 gtggagcctgaagacgggactg-aactgctgccatctcaggataaaactc-taacaggtgaggagcagcatttatggatgagcaaagt-aagtggtttcttgggatggaCGgtg-aacactgcagacagcagggtaaggtcacttctgtcaggtccaaaccaaccgaggccagagagtacacggcggcagggctcacgcctgcatggctgagatgaggacagtgtcaaagacattctaaaataaccccacaaggaattccttatcaggaatgcagcaattcagacaagatgctctaggaagaacactggcccagcagcggcatctcaaccagtgaacggctg-ccaactctggttttcagcctcagagccagtgaactc-tgtttccaagcagcttatgtgaacttctcagccagggagagcttccctgcccctccctctccggcacatgggtggctcgccacactggctcatctctcgatgagagtcccccaccctctggccacagtggttcatctctggttataatcctttcttctaattcccaaatacatttgacatgtgtgtgg---------tttctttttttttttttttggtcgacagaatctactccaggcaaagatgttgtgaactgtgttgaaatgac---aaggaatgagaacatta-tataaacttagttgatacagcagtggcagcatttgagaggactgactgcgatgctgaaagga----ggtccac--tgggtaaaacgctatccaacagaatcgcatgctgcagagaaatctttcgtgaaaggaagagtgaatcgatgcggcaaacctcattcttgccttattttaagaaatcaccacagccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggaggatcacgaagtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggtgggtgcctgtagtcccagctacctgggaggctgaggcaggagaatggcaggaaccagggaggtggagcttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcgagactccgtctc----aaaaaaaaaa s panTro5.chr20 65590508 1133 + 66533130 gtggagcctgaagacgggactg-aactgctgccatctcaggataaaactc-taacaggtgaggagcagcatttatggatcagcaaagt-aagtggtttcttgggatggaCGgtg-aacactgcagacagcagggtaaggtcacttctgtcaggtccaaaccaaccgaggccagagagtacacggcgggagggctcacgcctgcaaggctgagatgaggacagtgtcaaagacattctaaaataaccccacaaggaattccttgtcaggaatgcagcaattcagacaagatgctctaggaagaacactggcccagcagcggcatctcaaccagtgaacggctg-ccaactctggttttcagcctcagagccagtgaactcttgtttccaagcagcttatgtgaacttctcagccagggagagcttccctgcccctccctctccggcacacgggtggctcgccacaCTGGCTCATCTCTCGATGAGAGTCCCCCACCCTctggccacagtggttcatctctggttataatcctttcttctaattcccaaatacattcgacatgtGTGTGGttttttttttttttttttttttttttttGGTCgacagaatctactccaggcaaagatgttgtgaactgtgttgaaatgac---aaggattgagaacatta-tataaacttagttgatacagcagtggcagcatttgagaggactgactgcgatgctgaaagga----ggtccactgtgggtaaaacgctatccaacagaatcgcatgctgcagagaaatctttcgtgaaaggaagagtgaatcgatgcggcaaacctcattcttgccttattttaagaaatcaccacagccgggcacggtggctcacgcctgtaatcccagcactttgggaggccagggcgggaggatcatgaagtcaggagatcaagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggtgggtgcctgtagtcccagctacccgggaggctgaggcaggagaatggcaggaaccagggaggtggagcttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcgagactccgtctc----aaaaaaaaaa i panTro5.chr20 C 0 C 0 s panPan2.chr20 61358864 1123 + 62195757 gtggagcctgaagacgggactg-aactgctgccatctcagtataaaactc-taacaggtgaggagcagcatttatggatcagcaaagt-aagtggtttcttgggatggaCGgtg-aacactgcagacagcagggtaaggtcacttctgtcaggtccaaaccaaccgaggccagagagtacacggcgggagggctcacgcctgcacggctgagatgaggacagtgtcaaagacattctaaaataaccccacaaggaattccttgtcaggaatgcagcaattcagacaagatgctctaggaagaacactggcccagcagcggcatctcaaccagtgaacggctg-ccaactctggttttcagcctcagagccagtgaactcttgtttccaagcagcttatgtgaacttctcagccagggagagcttccctgcccctccctctccggcacacgggtggctcgccacactggctcatctctcgatgagagtcccccaccctctggccacagtggttcatctctggttataatcctttcttctaattcccaaatacattcgacatgtgtgtgg----------ttttttttttttttttttggtcgacagaatctactccaggcaaagatgttgtgaactgtgttgaaatgac---aaggattgagaacatta-tataaacttagttgatacagcagtggcagcatttgagaggactgactgcgatgctgaaagga----ggtccactgtgggtaaaacgctatccaacagaatcgcatgctgcagagaaatctttcgtgaaaggaagagtgaatcgatgcggcaaacctcattcttgccttattttaagaaatcaccacagccgggcacggtggctcacgcctgtaatcccagcactttgggaggccagggcgggaggatcatgaagtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggtggtgggtgcctgtagtcccagctacccgggaggctgaggcaggagaatggcaggaaccagggaggtggagcttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcgagactccgtctc----aaaaaaaaaa i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 770152 1125 - 1017659 gtggagcctgaagacgggactgaaactgctg-catctcaggataaaactc-taacaggtgaggagcagcatttatggatgagcaaagtaaagtggtttcttgggatggaCGgtgaaacactgcagacagcagggtaaggtcacttctgtcaggtccaaacc-accgagg-cagagagtacacggcgggagggctcacgcctgcacggctcagatgaggac-gtgtcaaagacattctaaaataaccccacaaggaattccttgtcaggaatgcagcaattcagacaagatgctctaggaagaaca-tggcccagcagcagcatctcaaccagtgaacggctgcccaactctggttttcagcctcagagccagtgaactc-tgtttccaagcagcttatgtgaacttctcagccagggagagcttccctgcctcccctctctgggcacacgggtggctcgcca-actggctcatctctcgatgagagtcccccaccctctggccacagtggttcatctctggttataatcctttcttctaattcccaaatacattcgacatgtttgtgt----ttttttgtttgtttgtttgtttttggtc-acagaatctactccaggcaaagatgttgtgaactgtgttgaaatgac---aaggattgagaacattattataaacttagttgatacagcagtggcagcatttgagaggactgactgcgatgctgaaagga----ggtccactgtggataaaacgctatccaacggaatcgcatgctgcagagaaatctttcgtgaaaggaagagtgaatcgatgcggcaaacctcattcttgccttattttaagaaatcaccacagccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggcgggaggatcacgaagtcaggagatcaagaccatcctggctaacacggtg-aaccccgtct-tact-aaaatac-aaaaattagccaggcgtggtggtgggtg-ctgtagtcccagctacccgggaggctgaggcaggagaatggcaggaaccagggaggtggagcttgcagtgagctgagattgcaccactgcactccagcctgggcaacagagcgagactccgtctcaaaaaaaaaaaaaa i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109260659 1113 - 110113093 gtggagcctgaagatgggactg-aacagctgccatctccggataaaattcttaacagatgaggagcggcgtttatggatgagcaaagt-aagtggtttcctgggatggaCtgtg-aacgctgcagacagcagggtaaggtcacttctgtcaggtcccaaccaactgaggccagagagtacacggcgggagggctcacgcctgcacggctgagatgaggaccgtgtcaaagacattctaaaataaccccacaaggaattccttgtcaggaatgcagcaatccagacaagatgctctaggaagaacgctggcccagcagcggcatctcaaccagtgaacggatg-ccaactctggttttcagcctcagagccagtgacctc-tgtttccaagcagcttatgtgaacttctcagccagggagagcttccctgcccctccctctccggcacacgggtggcttgccacactggctcatctctgggtgagagtccccCACCCTCTGGCCACACTGGCTCATCTCTGGTTATAATCCTTTCTTCTAATTCCCAAATACATTCGACATG-----------------------TTTTTTttttttggtggacagaatctactccaggcaaagatgttgtgaacagtgttgaaatgacaagaaggactgagaacatta-tataaacttagttgataaagcagtggcagcatttgggaggactgactgcgatgctaaaaggagttcgttccactgtgggtaaaatgctatccaacagcatcgcatgctacagagaaatctttcgtgaaag---gagtgaatcgatgcagcaaacctcattcttgccttattttaagaaatcaccacagccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggaggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagccaggcgtggtggcgggcgcctgtagtcccagctacgtgggaggctgaggcaggagaatggcgggaaccagggaggtggagcttgcagtgagctgagatcgcgccactgcactccagcctgggcaacagagtgagactccatctc-----aaagaaaaa i nomLeu3.chr13 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e manLeu1.NW_012104365v1 5473564 976 + 6149316 I e saiBol1.JH378156 15533730 5064 + 16356641 I e calJac3.chr5 57412716 5822 + 159171411 I e colAng1.NW_012114444v1 4706294 615 - 5823884 I e chlSab2.chr2 89597493 628 - 90373283 I e cerAty1.NW_012001373v1 2926068 615 - 3785965 I e macNem1.NW_012014244v1 16082722 618 - 16982598 I e macFas5.chr10 95627154 603 + 96509753 I e rheMac8.chr10 91979590 668 - 92844088 I a score=17468.000000 s hg38.chr20_KI270871v1_alt 21822 15 + 58661 aaaaaat-cgccacag s panTro5.chr20 65591641 15 + 66533130 aaaaaat-cgccacag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61359987 16 + 62195757 aaaaaatacgccacag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771277 15 - 1017659 aaaaaat-cgccacag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109261772 15 - 110113093 aaaaaat-cgccacaa i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95627757 15 + 96509753 aagaaat-cgccacaa i macFas5.chr10 I 603 I 3 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e manLeu1.NW_012104365v1 5473564 976 + 6149316 I e saiBol1.JH378156 15533730 5064 + 16356641 I e calJac3.chr5 57412716 5822 + 159171411 I e colAng1.NW_012114444v1 4706294 615 - 5823884 I e chlSab2.chr2 89597493 628 - 90373283 I e cerAty1.NW_012001373v1 2926068 615 - 3785965 I e macNem1.NW_012014244v1 16082722 618 - 16982598 I e rheMac8.chr10 91979590 668 - 92844088 I a score=447220.000000 s hg38.chr20_KI270871v1_alt 21837 78 + 58661 ccccagccttcagcagccccacctcatcagcagtggccaccagcatcgaggtgagaccccctaccagcacaaagattg s panTro5.chr20 65591656 78 + 66533130 ccccagccttcagcagccccacctcatcagcagtggccaccagcatcgaggtgagaccccctcccagcacaaagattg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360003 78 + 62195757 ccccagccttcagcagccccacctcatcagcagtggccaccagcatcgaggtgagaccccctcccagcacaaagattg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771292 77 - 1017659 ccccagccttcagcagccccacctcatcagcagtggccaccagcatcgaggtgaga-cccctaccagcacaaagattg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109261787 78 - 110113093 ccccagccttcagcagccccacctcatcagcagtggccaccagcatcgagctgagaccccctaccagcacaaagagtg i nomLeu3.chr13 C 0 I 106 s rheMac8.chr10 91980258 78 - 92844088 ccccagccttcagcagccccagctcatcagcagtggccgccggcatcgaggtgagaccctctgctggcacaaagatta i rheMac8.chr10 I 668 C 0 s macFas5.chr10 95627775 78 + 96509753 ccccagccttcagcagccccacctcatcagcagtggccgccggcatcgaggtgagaccctctgctggcacaaagatta i macFas5.chr10 I 3 C 0 s macNem1.NW_012014244v1 16083340 78 - 16982598 ccccagccttcagcagccccacctcatcagcagtggccgccggcatcgaggtgagaccctctgctggcacaaagatta i macNem1.NW_012014244v1 I 618 C 0 s cerAty1.NW_012001373v1 2926683 78 - 3785965 ccccagccttcagcagccccacctcatcagcagtggccaccggcatcgaggtgagaccctctgccggcacaaagatta i cerAty1.NW_012001373v1 I 615 C 0 s chlSab2.chr2 89598121 78 - 90373283 ccccagccttcagcagccccacctcatcagcagtggccaccggcatcgaggcgagaccctctgccggcacaaagatca i chlSab2.chr2 I 628 C 0 s manLeu1.NW_012104365v1 5474540 78 + 6149316 ccccagccttcagcagccccacctcatcagcagtggccactggcatcgaggtgagaccctctgccggcacaaagatta i manLeu1.NW_012104365v1 I 976 C 0 s colAng1.NW_012114444v1 4706909 78 - 5823884 ccccagccttcagcagccccacctcatcagcagtggccatcggcatcgaggtgagaccctctgccggcacaaagatta i colAng1.NW_012114444v1 I 615 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e saiBol1.JH378156 15533730 5064 + 16356641 I e calJac3.chr5 57412716 5822 + 159171411 I a score=54798.000000 s hg38.chr20_KI270871v1_alt 21915 11 + 58661 caactcgcaga s panTro5.chr20 65591734 11 + 66533130 caactcgcaga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360081 11 + 62195757 caactcgcaga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771369 11 - 1017659 caactcgcaga i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91980336 11 - 92844088 caactcgcgga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95627853 11 + 96509753 caactcgcgga i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16083418 11 - 16982598 caactcgcgga i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2926761 11 - 3785965 caactcgcgga i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598199 11 - 90373283 caactcgcgga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5474618 11 + 6149316 caactcgcgga i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4706987 11 - 5823884 caactcgcgga i colAng1.NW_012114444v1 C 0 C 0 e nomLeu3.chr13 109261865 106 - 110113093 I e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1941028 5158 + 11732439 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e saiBol1.JH378156 15533730 5064 + 16356641 I e calJac3.chr5 57412716 5822 + 159171411 I a score=545468.000000 s hg38.chr20_KI270871v1_alt 21926 101 + 58661 aggctcaggtgattgttagtatttttttagcaattaagtatttgtaagtgaaagtacgtgcagtgttttactg-ttttttagacataatgctactgcacact s panTro5.chr20 65591745 102 + 66533130 aggctcaggtgattgttagtatttttttagcaattaagtatttgtaagtgaaagtacgtgcagtgttttactgtttttttagacataatgctactgcacact i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360092 100 + 62195757 aggctcaggtgattgttagta-ttttttagcaattaagtatttgtaagtgaaagtacgtgcagtgttttactg-ttttttagacataatgctactgcacact i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771380 100 - 1017659 aggctcaggtgattgttaatt-ttttttagcaattaagtatttgtaagtgaaagtacgtgcagtgttttactg-ttttttagacataatgctactgcacact i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91980347 100 - 92844088 aggctcaggtgattgttagta-tattttagcaattaagtatttgtaagtgaaggtacgtgcagtgttttactg-gtttttagacataatgctactgcacact i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95627864 100 + 96509753 aggctcaggtgattgttagta-tattttagcaattaagtatttgtaagtgaaggtacgtgcagtgttttactg-gtttttagacataatgctactgcacact i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16083429 100 - 16982598 aggctcaggtgattgttagta-tattttagcaattaagtatttgtaagtgaaggtacgtgcagtgttttactg-gtttttagacataatgctactgcacact i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2926772 100 - 3785965 aggctcaggtgattgttagta-tattttagcaactaagtatttgtaagtgaaggtacgtgcagtgttttactg-gtttttagacataatgctactgcacact i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598210 100 - 90373283 aggctcaggtgattgttagta-tattttagcaattaagtatttgtaagtgaaggtacgtgcagcgctttactg-gtttttagacataatgctactgcacact i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5474629 100 + 6149316 aggctcaggtgattgttagta-tattttagcaactaagtatttgtaagtgaaggtacgtgcagtgttttactg-gtttttagacataatgctactgcacact i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4706998 100 - 5823884 agcctcaggtgattgttagta-tattttagcaattaagtatttgtaagtgaaagtacgtgcagtgttttactg-gtttttagacataatgctactgcacagt i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1946186 90 + 11732439 aggctcagatgactgttagta-ttttttagcaattaagtatttgtaaatgaaggaatgtgcag-----------ttattcagacataatgctactgcacact i aotNan1.NW_018500483v1 I 5158 C 0 e nomLeu3.chr13 109261865 106 - 110113093 I e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e saiBol1.JH378156 15533730 5064 + 16356641 I e calJac3.chr5 57412716 5822 + 159171411 I a score=140016.000000 s hg38.chr20_KI270871v1_alt 22027 30 + 58661 tagtaagctatggcatggtataaacataac s panTro5.chr20 65591847 26 + 66533130 tagtaagctatggcatggtataaaca---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360192 26 + 62195757 tagtaagctatggcatggtataaaca---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771480 29 - 1017659 tagtaagctatggcatggtat-aacataac i gorGor5.CYUI01015750v1 C 0 I 2 s nomLeu3.chr13 109261971 30 - 110113093 tagtaagttacggcatgctataaacattac i nomLeu3.chr13 I 106 I 2 s rheMac8.chr10 91980447 27 - 92844088 ---caggctacagcatggtgtaaacataac i rheMac8.chr10 C 0 I 2 s macFas5.chr10 95627964 27 + 96509753 ---caggctacagcatggtgtaaacataac i macFas5.chr10 C 0 I 2 s macNem1.NW_012014244v1 16083529 27 - 16982598 ---caggctacagcatggtgtaaacataac i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2926872 27 - 3785965 ---taggctacagcatggtgtaaacgtaac i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598310 30 - 90373283 tagtaggctacagcatggtgtaaacataac i chlSab2.chr2 C 0 I 2 s manLeu1.NW_012104365v1 5474729 27 + 6149316 ---taggctacagcatggtgtaaacataac i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4707098 30 - 5823884 tagtaggctacagcatggtgtaaacataac i colAng1.NW_012114444v1 C 0 I 2 s aotNan1.NW_018500483v1 1946276 30 + 11732439 tagtaggctacagcacggtgtaaacgccac i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e saiBol1.JH378156 15533730 5064 + 16356641 I e calJac3.chr5 57412716 5822 + 159171411 I a score=-1313.000000 s hg38.chr20_KI270871v1_alt 22057 9 + 58661 ------ttttttttt s gorGor5.CYUI01015750v1 771511 9 - 1017659 ------ttttttttt i gorGor5.CYUI01015750v1 I 2 C 0 s nomLeu3.chr13 109262003 9 - 110113093 ------ttttttttt i nomLeu3.chr13 I 2 C 0 s rheMac8.chr10 91980476 3 - 92844088 ------ttt------ i rheMac8.chr10 I 2 C 0 s macFas5.chr10 95627993 3 + 96509753 ------ttt------ i macFas5.chr10 I 2 C 0 s macNem1.NW_012014244v1 16083557 3 - 16982598 ------ttt------ i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2926899 3 - 3785965 ------ttt------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598342 3 - 90373283 ------ttt------ i chlSab2.chr2 I 2 C 0 s manLeu1.NW_012104365v1 5474756 3 + 6149316 ------ttt------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4707130 3 - 5823884 ------ttg------ i colAng1.NW_012114444v1 I 2 C 0 s calJac3.chr5 57418538 9 + 159171411 ttttttttt------ i calJac3.chr5 I 5822 C 0 s aotNan1.NW_018500483v1 1946306 9 + 11732439 ttttttttt------ i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I e saiBol1.JH378156 15533730 5064 + 16356641 I e panPan2.chr20 61360218 0 + 62195757 C e panTro5.chr20 65591873 0 + 66533130 C a score=400092.000000 s hg38.chr20_KI270871v1_alt 22066 57 + 58661 tttttttttttgagacggagtctcgggctgtt-tcccaggctggaatgcagtggcgca s panTro5.chr20 65591873 52 + 66533130 ------tttttgagacggagtctcaggctgttggcccaggctggaatgcagtggcgca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360218 52 + 62195757 ------tttttgagacggagtctcaggctgttggcccaggctggaatgcagtggcgca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771520 57 - 1017659 tttttttttttgagacggagtctcaggctgtt-gcccaggctggaatgcagtggcgca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262012 53 - 110113093 tt----tttctgagatcgagtctcacgctgtt-gcccaggctggaatgcagtggcgcg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91980479 51 - 92844088 ------tttttgagacggagtctcacgctgtt-gcccaggctggagtgcaatggcgcg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95627996 51 + 96509753 ------tttttgagacggagtctcacgctgtt-gcccaggctggagtgcaatggcgcg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16083560 51 - 16982598 ------tttttgagacggagtctcacgctgtt-gcccaggctgcagtgcaatggcgcg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2926902 51 - 3785965 ------tttttgagacggagtctcacgctgtt-gcccaggctggagtgcaatggcgcg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598345 51 - 90373283 ------tttttgagacagagtctcacgctgtt-gcccaggctggagtgcaatggcgtg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5474759 51 + 6149316 ------tttttgagacggagtctcacgctgtt-gcccaggctggagtgcaatggcacg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4707133 51 - 5823884 ------tttttgagatggagtctcacgctgtt-gcccaggctggagtgccatggcgcc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57418547 56 + 159171411 tttttttttttgagac-aagtctcgatctgtc-gcccaggctggagtgcagtggcacg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15538794 57 + 16356641 tttttttttttgagacaaagtctcactctgtc-acccaggctggagtgcagtggcacg i saiBol1.JH378156 I 5064 C 0 s aotNan1.NW_018500483v1 1946315 53 + 11732439 ----tttttttcagacggactctcgctctgtt-gcccaggctggagtgcagtggcacg i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e cebCap1.NW_016107870v1 379797 5480 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I a score=2251703.000000 s hg38.chr20_KI270871v1_alt 22123 238 + 58661 atctcggctcactgcaacctccgtctcccgggttcaagtgattctcctgcctcagcc----tcctgagtagctgggattacaggcgtgtgccaccacgcccagctaatttttttg-tatttttagtagagatggggtttcaccatgttggctaagctggtctcgaactcctgacctcaagagatctgcctgcctcagcctcctaaagtgctgggattacaggtgggagccacggtgcccagcc s panTro5.chr20 65591925 238 + 66533130 atctcggctcactgcaacctccgtctcccgggttcaagtgattctcctgcctcagcc----acctgagtagctgggattacaggcgtgtgccaccacgcccagctaatgttttcg-tatttttagtagagatggggtttcaccatgttggctaagctggtctcgaactcctgacctcaagagatctgcctgcctcagcctcctaaagtgctgggattacaggtgggagccacggtgcccagcc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360270 238 + 62195757 atctcggctcactgcaacctccgtctcccgggttcaagtgattctcctgcctcagcc----acctgagtagctgggattacaggcgtgtgccaccacgcccagctaatgttttcg-tatttttagtagagatggggtttcaccatgttggctaagctggtctcgaactcctgacctcaagagatctgcctgcctcagcctcctaaagtgctgggattacaggtgggagccacggtgcccagcc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771577 236 - 1017659 atctcggctcactgcaacctccgtctcccgggttcaagtgattctcctgcctcagcc----tcctgagtagctgggattacaggcgtgtgcca-catgcccagctaatttttttg-tatttttagtagagatggggtttcaccatgttggctaagctggtctcgaactcctgacctcaagagatctgcctgcctcagcctcctaaagtgctgggattacaggtgggagccac-gtgcccagcc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262065 238 - 110113093 atctcggctcactgcaacctccatctcccgggttcaagtgattctcctgcctcagcc----tcctgagtagctgggattacaggcatgtgccaccatgcccggctaatttttttg-tatttttagtagagatggggtttcaccatgttggccaagctggtcctgaactcctgacctcaagagatctgcccgcctcagcctcccaaagtgctgggattacaggtgggagccacggtgcccggcc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91980530 238 - 92844088 atcttggctcactgcaacctccgtctcccgggttcaagcaattctgctgcctcagcc----tcctcagtagctgggattacaggcatgagccaccatgcctggctaattttttta-tatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagagatctgcccacctcggcctcccaaagtgctgggatgacaggtgggagccacggtgcccggcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95628047 238 + 96509753 atcttggctcactgcaacctccgtctcccgggttcaagcaattctgctgcctcagcc----tcctcagtagctgggattacaggcatgagccaccatgcctggctaattttttta-tatttttagtagagatggggtttcaccatgttggccagggtggtctcgaactcctgacctcaagagatctgcccacctcggcctcccaaagtgctgggatgacaggtgggagccacggtgcccggcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16083611 238 - 16982598 atcttggctcactgcaacctccgtctcccgggttcaagcaattctgctgcctcagcc----tcctcagtagctgggattacaggcatgagccaccatgcctggctaattttttta-tatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagagatctgcccacctcggcctcccaaagtgctgggatgacaggtgggagccacggtgcccggcc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2926953 238 - 3785965 atcttggctcactgcaacctccatctcccgggttcaagtgattctgctgcctcagcc----tcctcagtagctgggattacaggcatgagccaccatgcctggttaatttttttg-tatttttagtagagatggggtttcaccatgttggccaggctggtctcgaactcctgacctcaagagatctgcccacctcggcctcccaaagtgctgggattacaggtgggagccacggtgcccagcc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598396 238 - 90373283 atcttggctcactgcaacctccgtctcccgggttcaagcaattctgctgcctcagcc----tcctcagtagctgggattacaggcatgagccaccatgcccggctaatttttttg-tatttttagtagagacgggatttcaccatgttggccaggctggtctcgaactcctgccctcaagagatctgcccacctcggcctcccaaagtgctgggattacaggtgggagccacagtgcccagcc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5474810 239 + 6149316 atcttggctcactgcaacctccgtctcccgggttcaagcgattctgctgcctcagcc----tcctcagtagctgggattactggcatgagccaccatgcttggctaatttttttgttatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagagatctgcccaccttggcctcccaaagtgctgggattacaggtgggagccacggtgcccagcc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4707184 238 - 5823884 atctcagctcactgcaacctccgtctcccgggttcaagcgattctcctgcctcagcc----tcctcagtagctgggattacaggcatgagccaccatgcccagctgatttttttg-tatttttagtagagatagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagagatctgccaacctcggcctcccaaagtgctgggattacaggtgggagccacggtgcccagcc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57418603 241 + 159171411 atcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagctcagctcctaagtagctgggattacaggcacccaccaccacactcggctaa-ttttttg-tatttttagtagagatggggtttcaccatattggctggactggtctcaaacttccgacctcaagcgatctgcctgcctgggcctcccaaaatgctgggattacaggcatgagccactgtgcccagcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15538851 238 + 16356641 atcttggctcaccgaaacctctgcctcctgggttcaagagattctcctgcctcagct----tcctgagtccctgggattacaggcacccacaaatacacccagctaatttttttg-tatttttagtagagacagggtttcagcacgttggccagactagtctcgaactcctgacctcaagcaatttgcctgccccagcccccaaaaatgctgggattacacgcatgagccactgtgcccggcc i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 385277 237 + 1231380 atcttggctcacggcaacctctgcctcccgggttcaaccgattctcctgcttcagct----tcctgagtccctgggattacaggcacccaccaccaaacccgactaa-ttttttg-tattttcagtagagacagggtttcctcatgttggccagactggtctcaaactcctgacctcaagcgatctgcctgcctcggtctcccaaaatgctgggattacaggcatgagccactgtgctcggcc i cebCap1.NW_016107870v1 I 5480 C 0 s aotNan1.NW_018500483v1 1946368 237 + 11732439 atcttggctcactgcatcctctgcctcctggattcaagcaattctcctgcctcagct----tcctgagtatctgggattacaggtacccaccacctcatctggctaattgttttg-tatttttagtagagacggggtttcaccatgttggccagactggtctcaaacccctgacctcaagcgatctgcctgcctcggtctcccaaaatgct-ggattacaggcgtgagccactgtgcccggcc i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22157883 7087 + 22939663 I a score=2315520.000000 s hg38.chr20_KI270871v1_alt 22361 255 + 58661 tgtaaacataacttccatatgcactgggaaaccacgaaatttgtgtgactcgctttattgccg-tat---ctctaccgtagtggtctggaaccacggctgcaggtcctctgaggtgcgcctgTGGAGAGGCCCAGCTGTGCTCTGGAAATGTGCA-CCA---GCTGCTAAGAGTGACCTTC---GAGGGAAGCAGGGCGCATGGGACCCTGGGTGCTCAGACGCTGCTTTTTCTGGCACTATTGTAACCTTTTCACCACACGTACG s panTro5.chr20 65592163 255 + 66533130 tgtaaacataacttccatatgcactgggaaaccacgaaatttgtgtgactcgctttattgccg-tat---ctctactgtagtggtctggaaccacggctgcaggtcctctgaggtgcgcccgTGGAGAGGCCCAGCTGTGCTCTGGAAATGTGCA-CCA---GCTGCTAAGAGTGACCTTC---GAGGGAAGCAGGGCGCATGGGACCCTGGGTGCTCAGATGCTGCTTTTTCTGGCACTATTTTAACCTTTTCACCACACATACG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360508 255 + 62195757 tgtaaacataacttccatatgcactgggaaaccaagaaatttgtgtgactcgctttattgccg-tat---ctctactgtagtggtctggaaccacggctgcaggtcctctgaggtgcgcccgTGGAGAGGCCCAGCTGTGCTCTGGAAATGTGCA-CCA---GCTGCTAAGAGTGACCTTT---GAGGGAAGCAGGGCGCATGGGACCCTGGGTTCTCAGATGCTGCTTTTTCTGGCACTATTTTAACCTTTTCACCACACATACG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 771813 257 - 1017659 tgtaaacataa-ttccatatgcactgggaaaccacgaaatttgtgtgactcgctttattgccg-tat---ctctactgtagtggtctggaaccacggctgcaggtcctctgaggtgcgcccgTGGAGAGGCCCAGCTGTGCTCTGGAAATGTGCA-CCACCTGCTGTTAAGAGTGACCTTC---GAGGGAAGCAGGGCGCATGGGACCCTGGGTGCTCAGACACTGCTTTTTCTGGCACTATTTTAACCTTTTCACCCCACGTACG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262303 258 - 110113093 tgtaaacataacttccatatgcactgggaaaccacgaaattcgtgtgactcactttattgccg-tat---ctctattgtagtggtctggaaccacggctgcaggtcctctgaggtgtgcccgTGGAGAGGCCCACCTGTGCCCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCAGGGCGCACGGGACCCTGGGTGCTCAGACGCTGCTTTTTCTGGCACTATTTTAACCTTTTCACCACATGTACG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91980768 259 - 92844088 tgtaaacataacttccacatgcactgggaaaccacgaaattcgtgtgactcactttattgccgttat---atctattgcagtggtctggaaccatggctgcaggacctctgaggtgtgcctgTGGAGAGGCCCAATGGTGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCAGGGCGCACGGGACCCTGGGTGCTCAGGTGCTGCCTTTTCTGGCACTGTTTTAACCTTTTCACCACATGTACG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95628285 259 + 96509753 tataaacataacttccacatgcactgggaaaccacgaaattcgtgtgactcactttattgccgttat---ctctattgcagtggtctggaaccatggctgcaggacctctgaggtgtgcctgTGGAGAGGCCCAACGGTGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAAGGGAGCAGGGCGCACGGGACCCTGGGTGCTCAGGTGCTGCCTTTTCTGGCACTGTTTTAACCTTTTCACCACATGTACG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16083849 259 - 16982598 tgtaaacataacttccacatgcactgagaaaccacgaaattcgtgtgactcactttattgcctttat---ctctattgcagtggtctggaaccatggctgcaggacctctgaggtgtgcctgTGGAGAGGCCCAACGGTGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCAGGGCGCACGGGACCCTGGGTGCTCAGGTGCTGCCTTTTCTGGCACTGTTTTAACCTTTTCACCACATGTACG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927191 258 - 3785965 tgtaaacataacttccacatgcactgggaaaccacgaaattcgtgtgactcactttattgccg-tat---ctctattgcagtggtctagaaccatggctgcaggacctctgaggtgtgcctgTGGAGAGGCCCAACGGTGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCAGGGCGCACGGGACCCTGGGTGCTCAGGTGCTGCCTTTTCTGGCACTGTTTTAACCTTTTCACCACATGTACG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598634 257 - 90373283 tgtaaacataacttccacatgcactgggaaaccacgaaattcatgtgactcactttattgccg-tat---ctctattatagtggtctggaaccatggctgcaggacccctgaggtgtgcccgTGGAGAGGCCCAACGGTGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCATGGCGCACGGGACCCTCGGTGCTCAGGTGCTGCC-TTTCTGGCACTGTTTTAACCTTTTCACCACATGTATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475049 258 + 6149316 tgtaaacataacttccacatgcactgggaaaccccgaaattcatgtgactcactttattgccg-tat---ctctattgcagtggtctggaaccatggctgcaggacctctgaggtgtgcctgTGGAGAGGCCCAACGGGGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCAGGGTGCACGGGACCCTGGGTGCTCAGGTGCTGCCTTTTCTGGCACTGTTTTAACCTTTTCACCACATGTACG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4707422 258 - 5823884 tgtaaacatgacttccacatgcactgggaaaccacgaaattcgtgtgactcactttattgccg-tat---ctctattgtagtggtctggaaccatggctgcaggacctctgaggtgtgcccgTGGAGAGGCCCAACGGTGCTCTGGAAATGTGCA-CCAGCTGCTGTTAAGAGTGACCTTC---GAGGGGAGCAGGGTGCACGGGACCCTGGGTGCTCAGGTGCTGCCTTTTCTGGCACTGTTTTAACCTTTTCACCACATGTACA i colAng1.NW_012114444v1 C 0 I 314 s calJac3.chr5 57418844 248 + 159171411 tgtaaacctaatttccacatgcactgggaaaccatgaaattcatgtgactctctttgttgcca-tgt---ctctgatgcagtggtctggaacc-tggctgcagggcctctgagctgtgccCAAGGTGAGGC-------TGCTCTGGAAATG-GCA-CGAGCTGCTGCTAAGAGTGACCTTC---GAGAGGAGT-CGGGGGACAGGAGCCAGGGTGCTGAGGAGCTTCTTTTTCGAGCAGTATTTTAACCTTTTCACCAAATGTACG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539089 257 + 16356641 tgtaaatctaatttccacatgcactgggaaaccacgaaattcgtgtgactcgctctgctgccg-tgt---ctctgatgcagtagtctggaacc-tggctgcagggcctctgagctgtgccCAAGGTGAGGCCCAACTGCGCTCTGGAAATG-GCA-CCAGCTGCTGCTAAGAGTGACCTGCTAAGAGGGGAGC-GGGGGGACAGGAGCCAGGGTGCTGAGGCCCTTCTTTTTCCAGCAGTA-TTTAACCTTTTCACCAAGTGCAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 385514 254 + 1231380 tgtaaacctaatttccacatgcactgggaaaccacgaaattcgcgtgacttgctgtgttgccg-tgt---ccctgatgcagtggtctggagct-tgtctgcagggcctctgagctgtgccCAA-GTGAGGCCCCACTGTGCTCTGGAAATG-GCACCCAGCTGCTGCTACGAGCGACCTTC---GAGGGCAGC--GGGGGACAGGAGCCAGGGTGCTGAGGCACTTCTTTTTCCGGCCATATTTTAACCTTTTCACGAAATGCACA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1946605 252 + 11732439 tgtaaacctaatttccacatgcactgggaaaccacgaaattcgtgtgactcactttgttgccg-tgt---ctctgatgcagtggtctggaacc-tggctgcagggcctctgagctgtgccCAAGGTGAGGCCCTACTATGTTCTGGAAATG-GCA-CCAGCTGCTGCT--GAGTGCCCTTC---GAGCGGAGC--GGGGGGCAGGAGCCAGCATGCCGAGGTGCTTCTTTTTCCGGCACTGTTTTAACCTTTTCACCAAATGTACG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22164970 233 + 22939663 tgtggacatgactcttacagacactgggaagcc-caaaagtcacatgacttgcattgttgcca-tgttcactttatcacagtggtctggaaccgagaccgccacccctccctagcgtgtctgCACAGAGGAC--AGGGCTCTCCAGAAAGACGCT-CAGG-----------------CCTG---GGAAGGGGCAGAG------AGGTCCCACATGCTTGCTCTATGCTTTTCCTA-TGCCATTTTCACC-ATTAATTACACATACA i otoGar3.GL873542 I 7087 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I a score=1174598.000000 s hg38.chr20_KI270871v1_alt 22616 121 + 58661 --TGGTCACTTTTT--AAACCGTCAATAGTGGAGTGAGATTTGGGGGCATTTTGGTTCTTCTTAAAA--CTCTTGCCTG--GAAATAAATAGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- s panTro5.chr20 65592418 121 + 66533130 --TGGTCACTTTTT--AAACCGTCAATAGTGGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATA--CTCTTGCATG--GAAATAAATAGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360763 121 + 62195757 --TGGTCACTTTTT--AAACCGTCAATAGTGGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATA--CTCTTGCATG--GAAATAAATAGCTGTTTGTAGTTTTTATAGTGGAAAATAAAT--ACACAC---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772070 120 - 1017659 --TGGTCACTTTTT--AAACCGTCAATAGTGGAGTGAGATTTGGGGGCATTTT-GTTCTTCTTTATA--CTCTTGCATG--GAAATAAATAGCTGTTTGTAGTTTTTATAGTGAAAGATAAAT--ACACAC---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262561 121 - 110113093 --TGGTCACTTTTT--AAACCGTCAATAGTGGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATA--CTCTTGCATG--GAAATAAATCGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981027 123 - 92844088 --TGGTCATTTTTT--AAACCATCAATAGTGGAGTGAGAGTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95628544 123 + 96509753 --TGGTCATTTTTT--AAACCATCAATAGTGGAGTGAGAGTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084108 123 - 16982598 --TGGTCATTTTTT--AAACCATCAATAGTGGAGTGAGAGTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927449 123 - 3785965 --TGGTCACTTTTT--AAACCATCAACAGTGGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89598891 125 - 90373283 --TGGTCACTTTTT--AAACCATCAACAGTGGAATGAGATTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTCTATAGTGGAAGATAAATACACACAC---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475307 123 + 6149316 --TGGTCATTTTTT--AAACCATCAATAGTGGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTTTATAGTGGAAGATAAAT--ACACAC---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4707994 123 - 5823884 --TGGTCACTTTTT--AAACCATCAATAGTGGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATAATCTTTTGCATG--AAAATAAATGGCTGTTTGTAGTTTTCATAGTGGAAGATAAAT--ACACAC---- i colAng1.NW_012114444v1 I 314 C 0 s calJac3.chr5 57419092 120 + 159171411 --T----AGTCACT--AAACTGTCAATATTAGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATACTCTTTTGCATT-AAAAATAAATCACTGCTTGTAGTTTTTATAGTGGGAGATAAAC--ACACAC---- i calJac3.chr5 C 0 I 4 s saiBol1.JH378156 15539346 119 + 16356641 --T---CACTTTTT--AAGCCGTCAATGTTAGAGTGAGATCT-GGGGCACTTCTGTTCCTCTTTATGCTCTTTTGCATT--AAAATAAATCAGTGCTTGTAGTTTTTATCGAGGGAGATAAAC--ACACAC---- i saiBol1.JH378156 C 0 I 4 s cebCap1.NW_016107870v1 385768 123 + 1231380 --TGGTCACTTTTT--AAACTGTCAATATTAGAGTGAGATTTGGGGGCATTTTTGTTCTTCTTTATACTCCTTTGCATT--AAAATAAATCACTGCTTGTAGTTTTTATAGTAGGAGATAAAC--ACACAC---- i cebCap1.NW_016107870v1 C 0 I 4 s aotNan1.NW_018500483v1 1946857 123 + 11732439 --TGGTCACTTTTT--AAACTGTCAACATTAGAGTGAGATTTGGGGGCATTTCTGTTCTTCTTTATACTCTTTTGCATT--AAAATAAATCACTGCTTGTAGTTTTTATAGTGGGAGATAAAC--ACACAC---- i aotNan1.NW_018500483v1 C 0 I 231 s otoGar3.GL873542 22165203 129 + 22939663 TGTACTCGCTTTTTAAAAATGGTCAATAATGGAATGAGATTTGGGAGCATTTTG----TTCTTTACACTCTGTAGCATTTTTTTAAAAATAGCCATTTGATGTCTTTATACTGAAAGATAAAT--ACATGTATAC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I a score=1718302.000000 s hg38.chr20_KI270871v1_alt 22737 228 + 58661 CTTAAGGTAGGCTGGACCCAGAG-----CCAAGACCACAAGAGGCACATCCCCTGCAGTGGCCACtgacactccgcggcttgtggccacgt--ctccagtctccgcctttgtggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tgattgcatttagggcc----cacctggggtaacccaggattatctccatctcaagatTTGCTGTCTAAGAC s panTro5.chr20 65592539 228 + 66533130 CTTAAGGTAGGCTGGACCCAGAG-----CCAAGACCACAAGAGGCACATCCCCTGCAGTGGCCACtgacactccgcagcttgtggccacgt--ctccagtctctgcctttgtggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---ggattgcatttagggcc----cacctggggtaacccaggatgatctccatctcaagatTTGCTGTCTAAGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61360884 228 + 62195757 CTTAAGGTAGGCTGGACCCAGAG-----CCAAGACCACAAGAGGCACATCCCCTGCAGTGGCCACtgacactccgcagcttgtggccacgt--ctccagtctctgcctttgtggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---ggattgcatttagggcc----cacctggggtaacccaggatgatctccatctcaagatTTGCTGTCTAAGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772190 228 - 1017659 CTTAAGGTAGGCTGGACCCAGAG-----CCAAGACCACAAGAGGCACATCCCCTGCAGTGGCCACtgacactccgcggcttgtggccacgt--ctccagtctctgcctttgtggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tgattgcatttagggcc----cacctggggtaacccaggattatgtccatctcaagatTTGCTGTCTAAGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262682 225 - 110113093 CTTAAGGTAGGCTGGACCCAGAG-----CCAAGACCACAAGAGGCACATCCCCTGCCGTGGCCACCGACACTCCGTGGCTTGTGGCCACGT--ctccagtctctgcctctgtggtcacactgctttcccctactctgtgtcagatctc---cttataagga------------tgcat------g---tgattgcatttagggcc----cacctggggtaacccaggattatctccatctcaagatcTGCTGTCCAAGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981150 231 - 92844088 CTTAAGGTGGGCTGGGCCCAGAATTTCTCCAAGACCACGAGAGGCACATCCCCTGCTGTTGCCACCgacactccatggcttgtggccatgt--ctccagtctctgcgtc--tggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tcattgcatttagggcc----cacctggtgtaacccaggcttatctccatctcaagatcTGCTGTCTGAGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95628667 231 + 96509753 CTTAAGGTGGGCTGGGCCCAGAATTTCTCCAAGACCACGAGAGGCACATCCCCTGCTGTTGCCACCGACACTCCATGGCTTGTGGCCATGT--ctccagtctctgcgtc--tggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tcattgcatttagggcc----cacctggtgtaacccaggcttatctccatctcaagatcTGCTGTCTGAGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084231 231 - 16982598 CTTAAGGTGGGCTGGGCCCAGAATTTCTCCAAGACCACGAGAGGCACATCCCCTGCTGTTGCCACCgacactccatggcttgtggccatgt--cttcagtctctgcgtc--tggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tcattgcatttagggcc----cacctggtgtaacccaggcttatctccatctcaagatcTGCTGTCTGAGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927572 231 - 3785965 CTTAAGGTGGGCTGGGCCCAGAATTTCTCCAAGACCACGAGAGGCACATCCCCTGCTGTTGCCACCgacactccatggcttgtggccatgt--ctccagtctctgcctc--tggtcacattgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tcattgcatttagggcc----cacctggtgtaacccaggcttatctccatctcaaGATCTGCTGTCTGAGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599016 229 - 90373283 CTTAAGGTGGGCTGGGCCCAGAA-----CCAAGACCACGAGAGGCACATCGCCTGCCGTGGCCACCGACACTCCACGGCTTGTGGCCATGT--ctccagtctccgcctc--tggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------gtcatcattgcatttagggcc----cacctggtgtaacccaggcttatctccatctcaagatcTGCTGTCTGAGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475430 231 + 6149316 CTTAAGGTGGGCTGGGCCCAGAATTTCTCCAAGACCACGAGAGGCACATCCCCTGCTGTTGCCACCgacactccatggcttgtggccatgt--ctccagtctctgcgtc--tggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tcattgcatttagggcc----cacctggtgtaacccaggcttatttccatctcaagatcTGCTGTCTGAGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708117 228 - 5823884 CTTAAGGTGGGCTGGGCCCAGAA-----CCAAGTCCACGAGAGGCACATCCCCTGCCGTGGCCACCgacactccatggcttgtggccatgt--ctccagtctctgcctctgtggtcacactgctttcccctcctctgtgtcaaatctccttcttataagga------------tgcat------g---tcattgcatttagggcc----cacctggtgtaacccaggcttatctcCCTGTCAAGATCTGCTGTCTAAGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419216 220 + 159171411 ATTAAGGCAGGCTGGACCCAGGG-----CTGAGACCACGAGAGGCACACACCCTGCCATGGCCA---ACACtccatggcttgtggccacatcactccaatctctgcctc------catactgctttctcctctgctgtgtccaatctccttcttctaagga------------cgcac------a---tgactgcacttagggcc----ca-ctggggtaacccgggagtgtctccatctcaagctcTCCTGTCTAAGAC i calJac3.chr5 I 4 C 0 s saiBol1.JH378156 15539469 219 + 16356641 ATTAAGGCAGGCTGGACCCAGGG-----CCAAGACCACAGGAGGCACACACCCTGCCGTGGCCA---ACACTCCGTGGCTTGTGGCCACATCACTGCAGTCTCCACCTC------CACACTGCTTTCTCCTCTGCTGCATCCAATCTC---CGTCTAAGGA------------CGCACGTGACTG---TGACTGTACTTAGGGCC----CA-CTGGGGAAACCCGGGAGTGTCTCCGCCTCAAGCTCTC----CTAAGAC i saiBol1.JH378156 I 4 C 0 s cebCap1.NW_016107870v1 385895 226 + 1231380 ATGAAGGCAGGCTGGACCCAGAG-----CCAAGACCATGAGAGGCACACACCCTGCTGTGGCCA---ACACtccgtggcttgtggccacatcactccagtctccgcctc------catactgctttctcctccgctgcgtccaatctccttcttctaagga------------cgcgcatgactg---tgactgcacttagggcc----ca-cTGGAGTAACCTGGGAGTGTCTCCATCTCAAGCTCTCCTGTTTAAGAT i cebCap1.NW_016107870v1 I 4 C 0 s otoGar3.GL873542 22165332 169 + 22939663 ACTAAAACAGGCTACACCCTGGG-----CTAAAACCATAAG---------CCCT---------------------------------ACAT--CT---------------------------------CCTTTTATGTGTGTTTTTTTTCTCTTGTAAAGAGAGGCAGGAAGCCAGAT------G---Tgctcacacctgtaatcctagcactctgggaagcccaggtgggtgaactgcttgagctcaccagttcaagac i otoGar3.GL873542 C 0 I 181 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1946980 231 + 11732439 I e canFam3.chr24 47081223 2564 + 47698779 I a score=143539.000000 s hg38.chr20_KI270871v1_alt 22965 25 + 58661 A-GGAGAGAGCCTATAGCCACATTCC s panTro5.chr20 65592767 25 + 66533130 A-GGAGAGAGCCTATAGCCACATTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361112 25 + 62195757 A-GGAGAGAGCCTATAGCCACATTCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772418 25 - 1017659 A-GGAGAGAGCCTATAGCCACATTCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262907 25 - 110113093 A-GGAGAGCGCCTATAGCCACATCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981381 26 - 92844088 AGGGAGAGAGCCTATAGCCACATCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95628898 25 + 96509753 A-GGAGAGAGCCTATAGCCACATCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084462 25 - 16982598 A-GGAGAGAGCCTATAGCCACATCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927803 25 - 3785965 A-GGAGAGAGCCTATAGCCACATCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599245 25 - 90373283 A-GGAGAGAGCCTATAGCCACATCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475661 25 + 6149316 A-GGAGAGAGCCTATAGCCACATCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708345 25 - 5823884 A-GGAGAGAGCCTATAGCCACATCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419436 12 + 159171411 A-G-------------GCCACGTCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539688 12 + 16356641 A-G-------------GCCACGTCCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386121 10 + 1231380 ----------------GCCACGTCCA i cebCap1.NW_016107870v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1946980 231 + 11732439 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22165501 181 + 22939663 I a score=802715.000000 s hg38.chr20_KI270871v1_alt 22990 84 + 58661 GCTGGCAGGGATCCTGGTCAGCTCTGCGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAGCTGCAAGAATGGCTGGTCCCAA-GGG s panTro5.chr20 65592792 85 + 66533130 GCTGGCAGGGATCCTGGTCAGCTCTGCGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAGCTGCAAGAATGGCTGGTCTCAAGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361137 85 + 62195757 GCTGGCAGGGATCCTGGTCAGCTCTGCGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAGCTGCAAGAATGGCTGCTCTCAAGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772443 84 - 1017659 GCTGGCAGGGATCCTGGTCAGCTCTGCGGGTCCAGTGGATGGA--AGACTTTGGGGGGGAGCTGCAAGAATGGCTGGTCCCAA-GGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109262932 84 - 110113093 GCTGGCAGGGATCCTGGTCAGCTCTGCGGGTCCAGTGGATGGA--AGACTTTGGGGAGCAGCTACAAGAATGGCTGGTCCCAA-GGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981407 83 - 92844088 GCTGGCAGGGA-CCTGGTCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95628923 83 + 96509753 GCTGGCAGGGA-CCTGGTCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084487 83 - 16982598 GCTGGCAGGGA-CCTGGTCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927828 83 - 3785965 GCTGGCAGGGA-CCTGGTCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599270 83 - 90373283 GCTGGCAGGGA-CCTGGTCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475686 83 + 6149316 GCTGGCAGGGA-CCTGATCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708370 83 - 5823884 GCTGGCAGGGA-CCTGGTCAGTTCTGAGGGTCCAGTGGATGGA--AGACTTTGGGGAGGAACTGTAAGAATGGCTGGTCCCAA-GGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419448 86 + 159171411 GCTGGCAGGGATCCCAGTCAACTCTGTGGGTCCAGTGGATGGGACAGACTTTGGGGAGTAGCTGCAAGAATGGCTGATCCCAA-GGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539700 86 + 16356641 GCTGGCAGGGATCCTGGTCAACTCTGCAGGTCCAGTGGCTGGGACAGACTTTGGGGAGGAGCTGTGAGAATGGCTGATCCCGA-GGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386131 86 + 1231380 GCTGGCAGGGTTCCCGGTCAACTCTGCGGGTCCAGTGGACAGGACAGACTTTGGGGAGGAGCTGCAAGAATGGCTGATCCCAA-GGG i cebCap1.NW_016107870v1 C 0 I 8 s aotNan1.NW_018500483v1 1947211 86 + 11732439 GCTGGCAGGGATCCCGGTCAACTCTGCGGGTCCAGTGGACGGGACAGACTTCGGGGAGGAGCTGCAAGAATGGCTGATCCCAA-GGG i aotNan1.NW_018500483v1 I 231 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22165501 181 + 22939663 I a score=25812.000000 s hg38.chr20_KI270871v1_alt 23074 3 + 58661 GGT s panTro5.chr20 65592877 3 + 66533130 GGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361222 3 + 62195757 GGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772527 3 - 1017659 GGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263016 3 - 110113093 GGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981490 3 - 92844088 GGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629006 3 + 96509753 GGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084570 3 - 16982598 GGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927911 3 - 3785965 GGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599353 3 - 90373283 GGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475769 3 + 6149316 GGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708453 3 - 5823884 GGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419534 3 + 159171411 AGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539786 3 + 16356641 AGT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1947297 3 + 11732439 AGT i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e cebCap1.NW_016107870v1 386217 8 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22165501 181 + 22939663 I a score=104484.000000 s hg38.chr20_KI270871v1_alt 23077 15 + 58661 CCTGCTGTCTGTCCA s panTro5.chr20 65592880 15 + 66533130 CCTGCTGTCTGTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361225 15 + 62195757 CCTGCTGTCTGTCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772530 15 - 1017659 CCTGCTGTCTGTCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263019 15 - 110113093 CCTGCTGTCTGTCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981493 15 - 92844088 CCTGCTGTCTGTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629009 15 + 96509753 CCTGCTGTCTGTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084573 15 - 16982598 CCTGCTGTCTGTCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927914 15 - 3785965 CCTGCTGTCTGTCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599356 15 - 90373283 CCTGCAGTCTGTCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475772 15 + 6149316 CCTGCTGTCTGTCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708456 15 - 5823884 CCTGCTGTCTGTCCA i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1947300 15 + 11732439 GCTACTGCCTGTCCA i aotNan1.NW_018500483v1 C 0 I 5 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e cebCap1.NW_016107870v1 386217 8 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22165501 181 + 22939663 I e saiBol1.JH378156 15539789 0 + 16356641 C e calJac3.chr5 57419537 0 + 159171411 C a score=34957.000000 s hg38.chr20_KI270871v1_alt 23092 12 + 58661 TAttttct----c-ttt------------- s panTro5.chr20 65592895 13 + 66533130 TAttttct----ctttt------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361240 12 + 62195757 TAttttct----c-ttt------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772545 13 - 1017659 TAttttct----ctttt------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263034 26 - 110113093 TATGttct----tttttttttcttttttac i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981508 26 - 92844088 TAttttct----ttttttattattttttat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629024 26 + 96509753 TAttttct----ttttttattattttttat i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084588 26 - 16982598 TAttttct----ttttttattattttttat i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927929 22 - 3785965 TAttttct----ttt----ttattttttat i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599371 25 - 90373283 TAttttct----tttttt-ttcttttttat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475787 25 + 6149316 TAttttct----tttttt-ttattttttat i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708471 27 - 5823884 TATTTTGTGGGGtttt---ttattttctat i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1947315 5 + 11732439 I e cebCap1.NW_016107870v1 386217 8 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e otoGar3.GL873542 22165501 181 + 22939663 I e saiBol1.JH378156 15539789 0 + 16356641 C e calJac3.chr5 57419537 0 + 159171411 C a score=1546404.000000 s hg38.chr20_KI270871v1_alt 23104 283 + 58661 ttttttgagacggagtctcgctctgtcacccaggctggagtgctgtggcgtgatctcggctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcccgagtagctgggattacagacgcacgccaccacgcccagctaa--tttttgtattttt-----aggagagac-agggtttcaccatgttggccaggctggtcttgatttcctgac-ctcgtgatcctcccacctcggcc--tccc-aaagtgctgggattgcaggcgtgagccactgtgcccg------ s panTro5.chr20 65592908 285 + 66533130 ttttttgagatggagtctcgctctgtcacccaggctggagtgctgtggcgtgatctcggctcactgcaacctccgcctccctggttcaagggattctcctgct-tcagcctcccaagtagctgggattacagacgcacgccaccacgcccagctaatttttttgtattttt-----aggagagac-agggtttcaccatgttggccaggctggtcttgatttcctgac-ctcatgatcctcccacctcggcc--tccc-aaagtgctgggattgcaggcgtgagccactgtgcccg------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361252 285 + 62195757 ttttttgagatggagtctcgctctgtcacccaggctggagtgctgtggcgtgatctcggctcactgcaacctccgcctccctggttcaagggattctcctgct-tcagcctcccaagtagctgggattacagacgcacgccaccacgcccagctaatttttttgtattttt-----aggagagac-agggtttcaccatgttggccaggctggtcttgatttcctgac-ctcatgatcctcccacctcggcc--tccc-aaagtgctgggattgcaggcgtgagccactgtgcccg------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772558 283 - 1017659 ttttttgagatggagtctcgctctgtcacccagactggagtgctgtggcatgatctcggctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcccgagtagctgggattacagacgcacgccaccatgcccagctaa--tttttgtattttt-----aggagagac-agggtttcaccatgttggccaggctggtcttgatttcccgac-ctcgtgatcctcccacctcggcc--tccc-aaagtgctgggattgcaggcgtgagccactgtgcccg------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263060 283 - 110113093 ttttttgagatggagtcttgctctgttg-ccaggctggagtgctgtggcgtgatctcggttcactgcaacctctgcctccctggttcaagcgattctcctgct-tcagcctcctgagtagctgggattacaggtgcctgccaccatgcccagctaa--tttttgtattttt-----aggagagacgggggtttcaccatgttggccaggctggtcttgatttcctgac-ctcgtgatcctcccgcctcagcc--tccc-aaagtgctgggattgcaggcgtgagccactgtgccca------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981534 280 - 92844088 ttttttgagatggagtctcactctgttg-cca-gttggagtactgtggcgtgatatccgctcactgcaacctccgcctccgtggttcaagcgattctcctgct-tcagcctcctgagtagctgagactacaggtgcacgccaccacacccggctaa--tttttgtattttt-----aggagagac-gggg-ttcaccatgttggccaggatggtcttgatttcctgat-ctcgtgatcttaccacctcggcc--tccc-aaagtgctgggattacaggcgtgagccactgtgccca------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629050 280 + 96509753 ttttttgagatggagtctcactctgttg-cca-gttggagtactgtggcgtgatctccgctcactgcaacctctgcctccctggttcaagcgattctcctgct-tcagcctcctgagtagctgggactacaggtgcacgccaccacacccggctaa--tttttgtattttt-----aggagagac-gggg-ttcaccatgttggccaggatggtcttgatttcctgat-ctcgtgatcttaccacctcggcc--tccc-aaagtgctgggattacaggcgtgagccactgtgccca------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084614 280 - 16982598 ttttttgagatggagtctcactctgttg-cca-gttggagtactgtggcgtgatctccgctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcctgagtagctgggactacaggtgcacgccaccacacccagctaa--tttttgtattttt-----aggagagac-gggg-ttcaccatgttggccaggatggtcttgaattcctgat-ctcgtgatcttaccacctcggcc--tccc-aaagtgctgggattacaggcgtgagccactgtgccca------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2927951 280 - 3785965 ttttttgagatggagtctcactctgttg-cca-gttggagtactgtggcgtgctctccgctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcctgagtagctgggactacaggtgcacgccaccacacccggctaa--tttttgtattttt-----aggagagac-gggg-ttcaccatgttggccaggatggtcttgatttcctgac-cttgtgatcttaccacctcagcc--tccc-aaagtgttgggattacaggcgtgagccactgtgccca------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599396 283 - 90373283 ttttttgagatggagtctcactctgtta-ccaggttggagtactgtggtgtgatctccgctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcccaagtagctgggactacaggtgcacgccaccacacccggctaa--tttttgtattttc-----aggagagat-ggggtttcaccatgttggccaggatggtcttgatttcctgac-ctcgtgatcctaccacctcggcc--tcccaaaagtgctgggattacaggcgtgagccactgtgccca------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5475812 280 + 6149316 ttttttgagatggagtctcactctgttg-cca-gttggagtactgtggcgtgatctccgctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcctgagtagctgggactacaggtgcacgccaccacacccggctaa--tttttgtattttt-----aggagagac-gggg-ttcaccatgttggccaggatggtcttgatttcctgac-cttgtgatcttaccacctcagcc--tccc-aaagtgctgggattacaggcgtgagccactgtgccca------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708498 282 - 5823884 ttttttgagatggagtctcactctgttc-ccaggttggagtactgtggcgtgatctccgctcactgcaacctccgcctccctggttcaagcgattctcctgct-tcagcctcctgagtagctgggactacaggtgcacgccaccacacctggctaa--tttttgtattttt-----aggtgagat-ggggtttcaccatgttggccaggatggtcttgatctcctgac-ctcgtgatccacccaccttggcc--tccc-aaagtgctgggattacaggcgtgagccactgtgccca------ i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22165682 235 + 22939663 taaaGAGAGGCAGGGTCTCACTCTGACACCCAGG---------------------------CACTGTTTACTCAGAGGTACAGCCTCAAA------TCCTGGTCTCAAGCTCCTGACTAGCTAGGGCTGCAGTCACAGGCCATAACACCCTGC-AA--GAGCCGTGTCTTTAAAACAAGAAAGAT-GAGA--------GAGAGCCCAGGCT-------ATGTCCAGCTACCAGTAA-------ATCTTGGTCAGTTCC-AAGTGTCTGG-----CAGGTCTGA--CTCTGGGCAGGCATCCT i otoGar3.GL873542 I 181 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1947315 5 + 11732439 I e cebCap1.NW_016107870v1 386217 8 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I e saiBol1.JH378156 15539789 0 + 16356641 C e calJac3.chr5 57419537 0 + 159171411 C a score=40996.000000 s hg38.chr20_KI270871v1_alt 23387 5 + 58661 gccAT s panTro5.chr20 65593193 5 + 66533130 gccAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361537 5 + 62195757 gccAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772841 5 - 1017659 gccAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263343 5 - 110113093 gccAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981814 5 - 92844088 gccAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629330 5 + 96509753 gccAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084894 5 - 16982598 gccAT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928231 5 - 3785965 gccAT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599679 5 - 90373283 gccAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476092 5 + 6149316 gccAT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708780 5 - 5823884 gccAT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419537 5 + 159171411 GCTAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539789 5 + 16356641 GCTAC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22165917 5 + 22939663 GCTGT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1947315 5 + 11732439 I e cebCap1.NW_016107870v1 386217 8 + 1231380 I e canFam3.chr24 47081223 2564 + 47698779 I a score=127798.000000 s hg38.chr20_KI270871v1_alt 23392 15 + 58661 TGTCTGTCCGTATTT s panTro5.chr20 65593198 15 + 66533130 TGTCTGTCCGTATTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361542 15 + 62195757 TGTCTGTCCGTATTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772846 15 - 1017659 TGTCTGTCCGTATTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263348 15 - 110113093 TGTCTGTCCATATTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981819 15 - 92844088 TGTCTGTCCATATTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629335 15 + 96509753 TGTCTGTCCATATTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084899 15 - 16982598 TGTCTGTCCATATTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928236 15 - 3785965 TGTCTGTCCATATTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599684 15 - 90373283 TGTCTGTCCATATTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476097 15 + 6149316 TGTCTGTCCATATTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708785 15 - 5823884 TGTCTGTCCATATTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419542 15 + 159171411 TGCCTGTCCCTCTTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539794 15 + 16356641 TGCCTGTCCGCGCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386225 15 + 1231380 TGTCTGTCCATGTTG i cebCap1.NW_016107870v1 I 8 C 0 s otoGar3.GL873542 22165922 13 + 22939663 --TCTGCTCACATCT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e aotNan1.NW_018500483v1 1947315 5 + 11732439 I e canFam3.chr24 47081223 2564 + 47698779 I a score=372252.000000 s hg38.chr20_KI270871v1_alt 23407 33 + 58661 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA s panTro5.chr20 65593213 33 + 66533130 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361557 33 + 62195757 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772861 33 - 1017659 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263363 33 - 110113093 TCAAGGTGGCTCAGGAATTACTTG-TGGTTGCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981834 33 - 92844088 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629350 33 + 96509753 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084914 33 - 16982598 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928251 33 - 3785965 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599699 33 - 90373283 TCAAGGTGGCTCAGGAATTACTTG-CGGATGCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476112 33 + 6149316 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708800 33 - 5823884 TCAAGGTGGCTCAGGAATTACTTG-TGGATGCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419557 33 + 159171411 TCAAGGTGGTTCAGGAATTACCTG-TGGATGCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539809 33 + 16356641 TCAGGGTGGTTCAGGAATTACCTG-TGGATGCCG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386240 33 + 1231380 TCAGGGTGGTTCAGGAATTACCTG-TGGATGCCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1947320 33 + 11732439 TCAAGGTGGTTCAGGAATTACTTG-TGGATGCCA i aotNan1.NW_018500483v1 I 5 C 0 s otoGar3.GL873542 22165935 29 + 22939663 ----GCAGGTTCAGGGATTACTTGCTGGATGCC- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e mm10.chr2 181105825 2710 + 182113224 I e canFam3.chr24 47081223 2564 + 47698779 I a score=585425.000000 s hg38.chr20_KI270871v1_alt 23440 56 + 58661 CAGTGGTCACTGCACGCTACCCACCCCC-AAATGGTGGGACGGCACTGGGTGGGGTC s panTro5.chr20 65593246 56 + 66533130 CAGTGGTCACTGCACGCTACCCACCCCC-AAATGGTGGGACGGCACTGGGTGGGGTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361590 56 + 62195757 CAGTGGTCACTGCACGCTACCCACCCCC-AAATGGTGGGACGGCACTGGGTGGGGTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772894 56 - 1017659 CAGTGGTCACTGCACCCTACCCACCCCC-AAATGGTGGGACGGCACTGGATGGGGTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263396 56 - 110113093 GAGTGGTCACTGTATCCTACCTGCCCCC-AAATGGTGGGACGGGGCTGGGTGGGGTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981867 56 - 92844088 GAGTGGTCACTGCACCCTACCTACCCCC-AAATGGTGGGACGGGGCTGGGTGGGGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629383 56 + 96509753 GAGTGGTCACTGCACCCTACCTACCCCC-AAATGGTGGGACGGGGCTGGGTGGGGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16084947 56 - 16982598 GAGTGGTCACTGCACCCTACCTACCCCC-AAATGGTGGGACGGGGCTGGGTGGGGTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928284 56 - 3785965 GAGTGGTCACTGCACCCTACCTACCCCC-AAATGGTGGGACGGGGCTGGGTGGGGTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599732 56 - 90373283 GAGTGGTCACTGCACCCTACCTACCCCC-AAATGGTGGGATGGGGCTGGGTGGGGTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476145 56 + 6149316 GAGTGGTCACTGCACCCTACCTACCCCC-AAATGGTGGGACGGGGCTGGGTGGGGTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708833 56 - 5823884 GAGTGGTCACTGCACCCTACCTACCCCG-AAATGGTGGGATGGGGCTGGGTGGGGTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419590 56 + 159171411 GAACAGTCACTGCACCCCACCCACCCCC-AAATGGTGGGACAGGGCTGGGTGAGGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539842 56 + 16356641 GAGCAGTCACTGCACCCCACCCACCCCC-AAATGGTGGGACAGGACTGGGTGAGGTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386273 56 + 1231380 GAGCGGTCGCTGCACCCTACCCACCCCC-AAATGGTGGGACAGGGCCGGGTGAGGTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1947353 56 + 11732439 GAGTGGTCACTGCACCCCACCCACCCCC-AAATGGCGGGACAGGGCTGGGCGAGGTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22165964 35 + 22939663 ----------------CCACCCACCCCCTGAACAGTGGG------CCAAGTGAGGTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181108535 55 + 182113224 CAGTGGCCTGCACACCTCACCTGCCCCT-GAATGGAAAGACCACA-TGAGCAAGCGC i mm10.chr2 I 2710 C 0 e dasNov3.JH567899 98908 14603 + 555560 I e canFam3.chr24 47081223 2564 + 47698779 I a score=2159546.000000 s hg38.chr20_KI270871v1_alt 23496 262 + 58661 CGGGCGGGCATCATGGGGGCCCACAGCCAGCATCAGGG--GT----CAGACGAGGTCAGGCA-CTGACTCACTGCAGT-GTGTG---GGCTCTAGGAGCC-TTGGCCCTGCAGCTGCAGAACGGGTG--------T---GCTCA-CCT---CCCAG-GGTGCGGTAGAGA----------------GGAC-CTGATGGCC-GGGCCCCAGCACCCACACAAGGCAAGGGCCACC-C---CAGCGTCCTCACACGAGCCACCCCTGTG---------CAGCCTCAGGGGTTGGAGCCATTTCTC-----AACACACACAC-TTC--ACAT s panTro5.chr20 65593302 262 + 66533130 CGGGCGGGCATCGTGGGGGCCCACAGCCAGCATCAGGG--GT----CAGACGAGGTCAGGCA-CTGACTCGCTGCAGT-GTGTG---GGCTCTAGGAGCC-TTGGCCCTGCAGCTGCAGAACGGGTG--------T---GCTCA-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCC-GGGCCCCAGCACCCACACAAGGCAAGGGCCACC-C---CAGCGTCCTCACACGAGCCACCCCCGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC-TTC--ACAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361646 262 + 62195757 CGGGCGGGCATCGTGGGGGCCCACAGCCAGCATCAGGG--GT----CAGACGAGGTCAGGCA-CTGACTCGCTGCAGT-GTGTG---GGCTCTAGGAGCC-TTGGCCCTGCAGCTGCAGAACGGGTG--------T---GCTCA-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCC-AGGCCCCAGCACCCACACAAGGCAAGGGCCACC-C---CAGCGTCCTCACACGAGCCACCCCCGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC-TTC--ACAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 772950 262 - 1017659 CGGGCGGGCATCATGGGGGCCCACAGCCAGCATCAGGG--GT----CAGACGAGGTCAGGCA-CTGACTCGCTGCAGT-GTGTG---GGCTCTAGGAGCC-TTGGCCCTGCAGCTGCAGAACGGGTG--------T---GCTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCC-GGGCCCCAGCACCCACACAAGGCAAGGGCCACC-C---CAGCGTCCTCACACGAGCCACCCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC-TTC--ACAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263452 261 - 110113093 CGGGCGGGCATCGTGGGGGCCCACAGCCAGCATCAGGG--TT----CAGACGAGGTCAGGCG-CTGACTCGCTGCAGT-GTGTG---GGCTCT-GCAGCC-TTGGCCCTGCAGCTGCAGAACGGGTG--------C---GCTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------CGAC-CTGATGGCC-GGGCCCCAGCGCCCACACAAGGCAAGGGCCACC-C---CAGCGTCCTCACACGAGCCACCCCTGTG---------CAGCCTCGGGGGTCAGAGCCATTTCTC-----AACACACACAC-TTC--ACAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91981923 261 - 92844088 CGGGCAGGCATCATCGGGGCCTACAGCCAGCATCAGGG--GG----CAGACGGGGTCAGGCA-CTGACT--CTGCAGC-ATGTG---GGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCGAATGGGTG--------C---ACTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAACGCAAGGGCCACC-CCAGCAGCATCTTCACACAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629439 261 + 96509753 CGGGCAGGCATCATCGGGGCCTACAGCCAGCATCAGGG--GG----CAGACGGGGTCAGGCA-CTGACT--CTGCAGC-ATGTG---GGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCGAATGGGTG--------C---ACTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAACGCAAGGGCCACC-CCAGCAGCATCTTCACACAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085003 261 - 16982598 CGGGCAGGCATCATCGGGGCCTACAGCCAGCATCAGGG--GG----CAGACGGGGTCAGGCA-CTGACT--CTGCAGC-ATGTG---GGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCGAATGGGTG--------C---ACTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAACGCAAGGGCCACC-CCAGCAGCATCTTCACACAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928340 263 - 3785965 CGGGCAGGCATCATCGGGGCCTACAGCCAGCATCAGGG--GT----CAGACGGGGTCAGGCA-CTGACTCACTGCAGC-ATGTG---GGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCGAATGGGTG--------C---ACTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAACGCAAGGGCCACC-CCAGCAGCATCTTCACACAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89599788 264 - 90373283 CGGGCGGGCATCATCGGGGCCTACAGCCAGCATCAGGG--GT----CAGACGGGGTCAGGCA-CTGACTCGCTGCAGC-ATGTG---GGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCGAATGGGTG--------C---ATTCGCCCC---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAAGGCAAGGGCCACC-CCAGCAGCGTCTTCACACAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476201 263 + 6149316 CGGGCAGGCATCATCGGGGCCTAGAGCCAGCATCAGGG--GT----CAGACGGGGTCAGGCA-CTGACTCACTGCAGC-ATGTA---GGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCAAATGGGTG--------C---ACTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAACGCTAGGGCCACC-CCAGCAGCATCTTCACAAAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4708889 259 - 5823884 TGGGAGGGCATCATGAGGGCCTACAGCCAGCATCAGGG--GT----CAGACGGGGTCAGGCA-CTGACTCACTGCAGC-ATGTG---AGCTCTGGGAGCC-TCAGCCCTGCAGCTTCCGAATGGGTG--------C---ACTCG-CCT---CCCAG-GGTGCGGTGGAGA----------------GGAC-CTGATGGCT-GGGCCCCAGCGCCCACACAAGG-AAGGGCCACC-C---CAGCGTCTTCACACAAACCA-CCCTGTG---------CAGCCTCAGGGGTCGGAGCCATTTCTC-----AACACACACAC--TC--GCAT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419646 231 + 159171411 TGGGCAGGCATCGTGGCAGCC-ACAGCCAGCA-CTGGG--GT----CAGACGAGGTCAGGCG-CTGACCCGCAGCAG--GTGTG---GGCTCTGGGAGCC-TTGGCCCTGCAGCTGCAGAGCAGGAG--------C---GCTAG-CCT---CCCAG-GGTGCTGCAGGGA----------------GGAC-ATGATGACC-GGG----------------------------CT-C---CAGCGTCCTCATGGGAGCCACCCCTGTG---------CAACCTCAGGGGTCTGCCCCATTTCTC-----AACACACAAAC-TTC--ATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15539898 243 + 16356641 TGGGCAGGCATCGTGGGAGCC-ACGGCCAGCA-CTGGG--GT----CAGACGAGGTCAGGCG-CCGACCCGCGGCAG--GTATG---GGCTCGGGGAGCC-TTGGCCGTGCAGCCG---------------------------G-CCT---CCCAG-GGTGCTGCAGAGA----------------GGAC-ATGACGGCC-GGGCCCCAGCACCCACACAGGGCCAGGGCCACC-C---CAGCGTCCTCACAGGAGCCACCCCTGTG---------CAACCTCAGGGGTCTGACCCATTTCTC-----AACACACAAAC-TCC--ACGT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386329 240 + 1231380 TGGGCAGGCACCGTGGGAGCC-ACAGCCAGCA-CTGGG--GT----CAGACGGGGTCAGGTG-CCGACCCACTGCAG--GTGTG---GGCTCTGGGAGCC-TTGGCCGTGCAGCTG---------------------------G-CCT---CCCAG-GGTGCTGCAGA-------------------GAC-ATGATGGCC-AGGCCCCAGCGCCCACACCGGGCAAGGGCCACC-C---CAGCGTCCTCACGGGAGCCACCCCTGTG---------CAACCTCAGGGGTCCGACCCATTTCTC-----AACACACAAAC-TTC--ACGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1947409 259 + 11732439 TGGGCAGGCATCGTGGGAGCC-GCAGCCAGCA-CCGGG--GT----CAGACGAGGTCAGGCG-CTGACCCGCTACAG--GTATG---GGCTCTGGGAGCC-TGGGCCCTGCAGCTGCAGAGCAGGTG--------C---GCTGG-CCT---CCCAG-GATGCTGCAGAGA----------------GGAC-ACGATGGCC-GGGCCCCAGCGCCCACACAGGGCAAGGGCCACC-C---CAGCGTCCGCACGGGAGCCACCCCTGTG---------CAACCTCAGGGGTCTGACCCATTTCTC-----AACATACAAAC-TTC--ACGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22165999 238 + 22939663 AGGGTA--CAGCATGGTGGTCCACAGCCAGGCTGGGAGCCGA----CAGCCAAGGCTCAGCA-CCTGCC--CTGCACCTGAGTGACCGTCTCTCCAAGCC-TCAGTCCT--AACT----AGCTGGTG--------T---ACCCA-CCT---CCCAGAGGCCCGAGGAAGA----------------TGACACAGGTGGCCTGGGCTCAGGTGCCCATACAGGATGAGAGACACC-C------------------------TGTTGTG---------CAA-CTCAGGTGTCTGAA-GGTTTCTA-----AACA-ATGAAC--TCAGACAT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181108590 282 + 182113224 AAAGCAGGAAGGCACAATGTCCACAGCTCATG-CCGAA--GTGTCACAGATGTGCCTCAGGA-GCCTCTTGCTATCAG-actca---acttctctaagctgtgggtctcacagctgcagaataggtgtgatgagac---actta-cct---cacag-gACACTGGGAATAACCTAGATGGTTCCTGAGAC-AGTATGACC-TGAGCCAAGTGACCAC-TGAGAATAGGTCCATC-C-AGCAGCAGTACCAT--GAGTCA-CTAGGTG---------TCACCTCAGATGTATAATCTTTTCTTA-----TGCTGA-------AC--ACAA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 113511 256 + 555560 CGGGCAGGACGGACGGCGGCTCACAG-------CAAGG--GC----GGGGCATGGACCGCCACCTGAGTGACCGCCG--CTCTG---GGCTCGGG----T-CCCGCCTGGC--------AATGGGCG--------TCCGACCCA-CCTGTCTCCGG-GGTGCAGCAAAGG----------------TCAC-C---TCGCC-AGAGCTGGGCATCCAGGC----CGACGGCCACCAC---CAGCCTCGCCTCTGGGAGG--TTCTGTGGCCGTGGCACAGCCTCGGAGGTCTAAGTGATTTTTTCTGGGAATCTGGGCACTTTC--ACAG i dasNov3.JH567899 I 14603 C 0 e canFam3.chr24 47081223 2564 + 47698779 I a score=362109.000000 s hg38.chr20_KI270871v1_alt 23758 46 + 58661 -CCTCGCTCCTTCC----A-CAGATTCCTG------CAGAGG-GTGAGC-GCTGTGG-CCC s panTro5.chr20 65593564 47 + 66533130 -CCTCGATCCTTCC----A-CAGATTCCTG------CAGAGG-GTGAGG-GCTGTGGCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361908 47 + 62195757 -CCTCGATCCTTCC----A-CAGATTCCTG------CAGAGG-GTGAGG-GCTGTGGCCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773212 47 - 1017659 -CCTCGCTCCTTCC----A-CAGATTCCTG------CAGAGG-GTGAGG-GCTGTGGCCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263713 47 - 110113093 -CCTCGCTCCTTTC----A-CAGATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982184 47 - 92844088 -CCTGGCTCCTCCC----A-CACATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629700 47 + 96509753 -CCTGGCTCCTTCC----A-CACATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085264 47 - 16982598 -CCTGGCTCCTTCC----A-CACATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928603 47 - 3785965 -CCTGGCTCCTTCC----A-CATATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600052 47 - 90373283 -CCTGGCTCCTTCC----A-CACATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476464 47 + 6149316 -CCTGGCTCCTTCC----A-CATATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709148 47 - 5823884 -CCTGGCTCCTCCC----A-CATATTCCCG------CAGAGG-GTGAGG-GCTGTGGCCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419877 44 + 159171411 -CCTCACTCCTTC-------CAGATTCCTG------CAGCGG-GTAAGG-GCTGTGGCCC- i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15540141 44 + 16356641 -CCTCACTCCTTC-------CAGATTCCTG------CAGCGG-GTAAGG-GCTATGGCCC- i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 386569 44 + 1231380 -CCTCACTCCTTC-------CAGATTCCTG------CAGCAG-GTAAGG-GCTGGGGCCC- i cebCap1.NW_016107870v1 C 0 I 1 s aotNan1.NW_018500483v1 1947668 44 + 11732439 -CCTCACTCCTTC-------CAGATTCCTG------CAGCGA-GTAAGG-GTTGTGGCCC- i aotNan1.NW_018500483v1 C 0 I 84 s otoGar3.GL873542 22166237 45 + 22939663 -TCACACTCCCTA-----A-CTTGTTCCTA------AGGGAA-ACCAGG-GCTGTGGCCC- i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181108872 30 + 182113224 -CTTTGTTTTTCC---------------------------AA-ACACAG-GCTACAGCCT- i mm10.chr2 C 0 C 0 s canFam3.chr24 47083787 48 + 47698779 -CCCCGCCACGTCC----GCCACGCCCCTG------CAGAGGAGCAGGA-GCTGTGGCCC- i canFam3.chr24 I 2564 C 0 s dasNov3.JH567899 113767 55 + 555560 ACCTGCCTCCTCACCCCGA-CGCGCTCCTGCCCAGCCACGGG-GCAAGGAGCCGCGC---- i dasNov3.JH567899 C 0 C 0 a score=609401.000000 s hg38.chr20_KI270871v1_alt 23804 88 + 58661 ATCCACAGACAGGGCA----------------------ATGCCAAAGCCCCAGCGGCCTCCACTCCTCAACAAGGTGGGACCAGGACAAGGGCTGT-----GCTGGTCCCCGGGG---------- s panTro5.chr20 65593611 88 + 66533130 ATCCACACACAGGGCA----------------------ATGCCAAGGCCCCGGCGGCCTCCAGTCCTCAACAAGGTGGGACCAGGACAAGGGCTGT-----GCTGGTCCCCGGGG---------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61361955 88 + 62195757 ATCCACACACAGGGCA----------------------ATGCCAAGGCCCCGGCGGCCTCCAGTCCTCAACAAGGTGGGACCAGGACAAGGGCTGT-----GCTGGTCCCCGGGG---------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773259 88 - 1017659 ATCCACAGACAGGGCA----------------------ATGCCAAGGCCCCAGCGGCCTCCAGTCCTCAACAAGGTGGGACCAGGACAAGGGCTGT-----GCTGGTCCCCGGGG---------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263760 88 - 110113093 ATCCACAGACAGGGCA----------------------ATGCCAAGGCCCCGGCAGCCTCCACTCCTCAACAAGGTGGGACCAGGATGAGGGCTGC-----GCTGGTCCCCGGGG---------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982231 87 - 92844088 ATCCGCAGATAGGGCA----------------------ATGCCAAGGCCCTGGCGGCCTCTACTCCTGGACAAGGTGGGACCAGGACGAGGGCTGC-----GCTGGTCCCCAGG----------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629747 87 + 96509753 ATCCGCAGATAGGGCA----------------------ATGCCAAGGCCCTGGCGCCCTCTACTCCTGGACAAGGTGGGACCAGGACGAGGGCTGC-----GCTGGTCCCCAGG----------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085311 87 - 16982598 ATCCGCAGATAGGGCA----------------------ATGCCAAGGCCCTGGCAGCCTCTACTCCTGGACAAGGTGGGACCAGGACGAGGGCTGC-----GCTGGTCCCCAGG----------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928650 87 - 3785965 ATCCGCAGATAAGGCG----------------------ATGCCAAGACCCTGGCGGCTTCTACTCCTGGACAAGGTGGGACCAGGACGAGGGCTGC-----GCTGGTCCCCAGG----------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600099 88 - 90373283 ATCCGCAGATAGGGCA----------------------ATGCCAAGGCCCTGGCGGCCTCTACTCCTGGACAAGGTGGGACCAGGACGAGGGCTGC-----GCTGGTCCCCAGGG---------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476511 87 + 6149316 ATCCGCAGATAAGGCG----------------------ATGCCAAGACCCTGGCGGCTTCTACTCCTGGACAAGGTGGGACCAGGACGAGGGCTGT-----GCTGGTCCCCAGG----------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709195 88 - 5823884 ATCCGCAGATAGGGTG----------------------ATGCCAAGGCCCTAGCGGCCTCTACTCCTGGACAAGGTGGGACAAGGATGAGGGCTGC-----GCTGGTCCCCAGGG---------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57419922 83 + 159171411 GTCCACAGGGAGAG--------------------------GCGAAGGCCAGAGCGGTCCCCACTCCTGGACAAGGT-GGACCAGGATGGGGGCTAC-----ACTGGCCCCCGGGG---------- i calJac3.chr5 I 1 I 1 s saiBol1.JH378156 15540186 82 + 16356641 GTCCACAGCGAGAG--------------------------GCCAAGGCCGGAGCGATCCCCACTCCTGGACAAGGT-GGACCAGGAT-GGGGCTGC-----GCTGGTCCCCGAGG---------- i saiBol1.JH378156 I 1 I 1 s cebCap1.NW_016107870v1 386614 82 + 1231380 GTCCACAGGGAGAG--------------------------GCCAAGGCCAGAGCGGTCCCCACTCCTGGGCAAGGT-GGACCAGGAT-AGGGCTGC-----ACTGGTCCCCAGGG---------- i cebCap1.NW_016107870v1 I 1 I 1 s otoGar3.GL873542 22166283 106 + 22939663 ATCCACAGACAAGGAGAAGCTGGTGATGGCCATGGTC-AGGCCAAGGTT-GGGCAGGCTCCACTGCTGATCAAGGTAGA--CAGGACAGGGGTTCC-----ACTGGTCCCCCATG---------- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181108902 104 + 182113224 ATCCATATACAGGGAAAAGCATGGTACAGCCATTGCCAGTGCCAGGATCCTGCTGGGTTC-ACTTCTGGGTGAGGTGAAATCAGGACAGGGGT----------TGGTCCCTAACA---------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47083835 71 + 47698779 GCCCACACAGGGGAC-----------------------GCGCTGGGGCT-GGGGGCTCTCTGCTCCCCA------------CAGGCCGGGAACCCC------CTGCTCCCCGG------------ i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 113822 96 + 555560 CCCCACGGCCAGGG------------------------ACGGCCACCTGCCATCGGCCGGCATC-----ACAAGCGGCAAGCAGGCCCTGAGTAGCCAGGCGCGGGGCCCGAGCAGGACGAGGTG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1947712 84 + 11732439 I a score=1793642.000000 s hg38.chr20_KI270871v1_alt 23892 116 + 58661 GACACCTGGACTCACCTGGATCAGGCCTGCTGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCTGTGCTGCTCCTGAACCTTCAGGGCAAACCCAGACCCCAAGATGCCCTGCA s panTro5.chr20 65593699 116 + 66533130 GACACCTGGACTCACCTGGATCAGGCCTGCTGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCTGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362043 116 + 62195757 GACACCTGGACTCACCTGGATCAGGCCTGCTGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCTGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773347 116 - 1017659 GACACCTGGACTCACCTGGATCAGGCCTGCTGCTGGGTTCCGCCTTTTCTCAAAGTGCTTCTGCCTGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263848 116 - 110113093 GACACCTGGACTCACCTGGATCAGGCCTGCTGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCTGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982318 109 - 92844088 -------GGACTCACCTGGATCAAGCCTGCAGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629834 109 + 96509753 -------GGACTCACCTGGATCAAGCCTGCAGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i macFas5.chr10 C 0 I 5 s macNem1.NW_012014244v1 16085398 109 - 16982598 -------GGACTCACCTGGATCAAGCCTGCAGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928737 109 - 3785965 -------GGACTCACCTGGATCAAGCCTGCAGCTGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600187 116 - 90373283 GACGCCTGGACTCACCTGGATCAGGCCTGCGGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476598 109 + 6149316 -------GGACTCACCTGGATCAAGCCTGCAGCTGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709283 116 - 5823884 GACGCCTGGACTCACCTGGATCAAGCCTGCGGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420006 116 + 159171411 GATGGCTTGACTCACCTGGATCAGGCCTGCTGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGATGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15540269 116 + 16356641 GACGGCTCGGCTCACCTGGATCAGGCCTGCTGCAGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGATGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 386697 116 + 1231380 GATGGCCTGACTCACCTGGATCAGGCCTGCTGCGGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGATGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1947796 116 + 11732439 GATGGTTTGACTCACCTGGATCAGGCCTGCTGCTGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGATGCTGCTCCTGAACCTTCAGGGCAAAGCCAGACCCCAAGATGCCCTGCA i aotNan1.NW_018500483v1 I 84 C 0 s otoGar3.GL873542 22166389 114 + 22939663 --TCCACTTGCTCACCTGGATCAAGCCCGCTGCTGGGTTTCGCCTCTTCTCAAAGTGCTTCTGCCGATGCTGCTCCTGAACCTTCAGGGCAAAACCAGACCCCAGGATGCCCTGTA i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181109006 116 + 182113224 GGGACTAAGGCTCACCTGGATCAGACCTGCCGCAGGGTTCCGCCGTTTCTCAAAGTGTTTTTGCCGATGCTGCTCTTGGACTTTCAGGGCAAAGCCGGATCCCAAAATGCCCTGCA i mm10.chr2 C 0 C 0 s canFam3.chr24 47083906 115 + 47698779 -CCCCCAGGGCTCACCTGGATCAGGCCAGCCGCCGGGTTCCGCCTCTTCTCAAAGTGCTTCTGCCGATGCTGCTCTTGGACTTTCAGAGCGAAGCCAGACCCCAAGATGCCCTGCA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 113918 116 + 555560 GGCGCCTGGACCTACCTGGATGAGGCCAGCCGCGGGGTTCCGCCGCTTCTCAAAGTGCTTCTGCCGGTGCTGCTCCTGGACTTTCAGGGCAAAGCCGGACCCCAGGATGCCCTGCA i dasNov3.JH567899 C 0 C 0 a score=36288.000000 s hg38.chr20_KI270871v1_alt 24008 5 + 58661 ATTCA s panTro5.chr20 65593815 5 + 66533130 ATTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362159 5 + 62195757 ATTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773463 5 - 1017659 ATTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263964 5 - 110113093 ATTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982427 5 - 92844088 ATTTG i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085507 5 - 16982598 ATTTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928846 5 - 3785965 ATTTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600303 5 - 90373283 ATTCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476707 5 + 6149316 ATTTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709399 5 - 5823884 ATTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420122 5 + 159171411 ATTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15540385 5 + 16356641 ATTCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386813 5 + 1231380 ATTCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1947912 5 + 11732439 ATTCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22166504 4 + 22939663 AGTG- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181109122 5 + 182113224 AGTCA i mm10.chr2 C 0 C 0 s canFam3.chr24 47084021 5 + 47698779 AGTCA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114034 5 + 555560 GGTCA i dasNov3.JH567899 C 0 C 0 e macFas5.chr10 95629943 5 + 96509753 I a score=251639.000000 s hg38.chr20_KI270871v1_alt 24013 23 + 58661 TCAGGGTC-----AGGTCACACCCCAGG s panTro5.chr20 65593820 23 + 66533130 TCAGGGTC-----AGGTCACACCCCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362164 23 + 62195757 TCAGGGTC-----AGGTCACACCCCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773468 23 - 1017659 TCAGGGTC-----AGGTCACACCCCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263969 23 - 110113093 TCAGGGTC-----AGGCCACACCTCAGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982432 23 - 92844088 TCAGGGTC-----AGGCCACATCCCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629948 23 + 96509753 TCAGGGTC-----AGGCCACATCCCAGG i macFas5.chr10 I 5 C 0 s macNem1.NW_012014244v1 16085512 23 - 16982598 TCAGGGTC-----AGGCCACATCCCAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928851 23 - 3785965 TCAGGGTC-----AGGCCACATCCCAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600308 23 - 90373283 TCAGGGTC-----AGGCCACACCCCAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476712 23 + 6149316 TCAGGGTC-----AGGCCACATCCCAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709404 4 - 5823884 ------TC-----AG------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420127 23 + 159171411 TCAGGGTC-----AGGCCACACTCCAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15540390 23 + 16356641 TCAGGGTC-----AGGCCACACCCCAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386818 23 + 1231380 TCAGGGTC-----AGGCCACATCCCAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1947917 23 + 11732439 TCAGGGTC-----AGGCCATGCCCCAGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22166508 23 + 22939663 TCAGGGTC-----AGGCCACATCCCAGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109127 23 + 182113224 CTAAGGTA-----AGACCACATCCTGGG i mm10.chr2 C 0 I 48 s canFam3.chr24 47084026 27 + 47698779 TCAGAGTCCCACGCGGCCGCGGCCACG- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114039 20 + 555560 ACAGGGTC-----AGCCCATCCCGC--- i dasNov3.JH567899 C 0 C 0 a score=-45954.000000 s hg38.chr20_KI270871v1_alt 24036 17 + 58661 GA---CCCCCCACA---------------------------------------------CCCCAA s panTro5.chr20 65593843 20 + 66533130 GACCCCCCCCCACA---------------------------------------------CCCCAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362187 19 + 62195757 GA-CCCCCCCCATA---------------------------------------------CCCCAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773491 17 - 1017659 GA---CCCCCCACA---------------------------------------------CCCCAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109263992 62 - 110113093 GA---CCCCCCACACCCCAATTCATCAGGGTCAGACCATGCTCCAGGGACCCACACACCCCCCAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982455 7 - 92844088 GA---CCCCC------------------------------------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629971 16 + 96509753 GA---CCCCC-ACA---------------------------------------------CCCTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085535 7 - 16982598 GA---CCCCC------------------------------------------------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928874 7 - 3785965 GA---CCCCC------------------------------------------------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600331 6 - 90373283 GA---CCCC-------------------------------------------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476735 6 + 6149316 GA---CCCC-------------------------------------------------------- i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57420150 16 + 159171411 GA---CCCCACAC----------------------------------------------CCCAAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15540413 11 + 16356641 G--------ACAC----------------------------------------------CCCCAA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 386841 16 + 1231380 GA---CCCCACAC----------------------------------------------CCCCAA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1947940 17 + 11732439 GA---CCCCACACA---------------------------------------------CCCCAA i aotNan1.NW_018500483v1 C 0 I 556 s otoGar3.GL873542 22166531 15 + 22939663 AC---CCACATCCA---------------------------------------------TCCA-- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47084053 16 + 47698779 GC---CCTCCCCCG---------------------------------------------CCTCA- i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 114059 0 + 555560 C e mm10.chr2 181109150 48 + 182113224 I e colAng1.NW_012114444v1 4709408 0 - 5823884 C a score=95971.000000 s hg38.chr20_KI270871v1_alt 24053 28 + 58661 TTCATCAGGGTCAGACCATGCTCTGGGG s panTro5.chr20 65593863 28 + 66533130 TTCATCAGGGTCAGACCACGCTCTGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362206 28 + 62195757 TTCATCAGGGTCAGACCACGCTCTGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773508 28 - 1017659 TTCATCAGGGTCAGACCACGCTCTGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264054 28 - 110113093 TTCATCAGGGTCAGACCACGCTCTGGGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95629987 28 + 96509753 TTCATCAGGGTCAGACCACGCCCCGGGA i macFas5.chr10 C 0 C 0 s calJac3.chr5 57420166 28 + 159171411 TTCATCAGGGTCAGGCCACACCCCGGGG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15540424 28 + 16356641 TTCATCAGGGTCAGGCCACACCCCAGGG i saiBol1.JH378156 C 0 M 1027 s cebCap1.NW_016107870v1 386857 28 + 1231380 TTCATCGGAGTCAGACCACACTCCAGGG i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22166546 28 + 22939663 CTCTTCAGGGTCAGGCCACGTCCCAGGA i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 114059 13 + 555560 --CGTCCGG-------------CCGAGG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181109150 48 + 182113224 I e aotNan1.NW_018500483v1 1947957 556 + 11732439 I e canFam3.chr24 47084069 0 + 47698779 C e manLeu1.NW_012104365v1 5476741 0 + 6149316 C e colAng1.NW_012114444v1 4709408 0 - 5823884 C e chlSab2.chr2 89600337 0 - 90373283 C e cerAty1.NW_012001373v1 2928881 0 - 3785965 C e macNem1.NW_012014244v1 16085542 0 - 16982598 C e rheMac8.chr10 91982462 0 - 92844088 C a score=-7069.000000 s hg38.chr20_KI270871v1_alt 24081 15 + 58661 ---CCCCACACCCCCCCC s panTro5.chr20 65593891 15 + 66533130 ---CCCCACACACCCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362234 15 + 62195757 ---CCCCACACACCCCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773536 3 - 1017659 ---CCC------------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264082 15 - 110113093 ---ACCCACACACCCCCC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95630015 15 + 96509753 ---ACCCATGTCTCCCAC i macFas5.chr10 C 0 T 87 s calJac3.chr5 57420195 12 + 159171411 ---CCCCACACCCCA--- i calJac3.chr5 I 1 C 0 s cebCap1.NW_016107870v1 386885 8 + 1231380 -------GCACCCCC--- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22166574 13 + 22939663 ----CCCACATCCCCCC- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47084069 5 + 47698779 ----------CCCCC--- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114072 15 + 555560 CCCTGCCGCTCCTCC--- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181109150 48 + 182113224 I e aotNan1.NW_018500483v1 1947957 556 + 11732439 I e manLeu1.NW_012104365v1 5476741 0 + 6149316 C e saiBol1.JH378156 15540452 1027 + 16356641 M e colAng1.NW_012114444v1 4709408 0 - 5823884 C e chlSab2.chr2 89600337 0 - 90373283 C e cerAty1.NW_012001373v1 2928881 0 - 3785965 C e macNem1.NW_012014244v1 16085542 0 - 16982598 C e rheMac8.chr10 91982462 0 - 92844088 C a score=1179.000000 s hg38.chr20_KI270871v1_alt 24096 1 + 58661 A s panTro5.chr20 65593906 1 + 66533130 A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362249 1 + 62195757 A i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109264097 1 - 110113093 A i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57420207 1 + 159171411 A i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 386893 1 + 1231380 A i cebCap1.NW_016107870v1 C 0 C 0 s canFam3.chr24 47084074 1 + 47698779 G i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 114087 0 + 555560 C e mm10.chr2 181109150 48 + 182113224 I e aotNan1.NW_018500483v1 1947957 556 + 11732439 I e otoGar3.GL873542 22166587 0 + 22939663 C e manLeu1.NW_012104365v1 5476741 0 + 6149316 C e saiBol1.JH378156 15540452 1027 + 16356641 M e colAng1.NW_012114444v1 4709408 0 - 5823884 C e chlSab2.chr2 89600337 0 - 90373283 C e cerAty1.NW_012001373v1 2928881 0 - 3785965 C e macNem1.NW_012014244v1 16085542 0 - 16982598 C e macFas5.chr10 95630030 87 + 96509753 T e rheMac8.chr10 91982462 0 - 92844088 C e gorGor5.CYUI01015750v1 773539 0 - 1017659 C a score=15104.000000 s hg38.chr20_KI270871v1_alt 24097 10 + 58661 ATTCATCAGG s panTro5.chr20 65593907 10 + 66533130 ATTCATCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362250 10 + 62195757 ATTCATCAGG i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109264098 10 - 110113093 ATTCATCAGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95629943 10 + 96509753 ATTTGTCAGG i macFas5.chr10 T 87 C 0 s colAng1.NW_012114444v1 4709408 1 - 5823884 ---------G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420208 10 + 159171411 ATTCATCAGG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 386894 10 + 1231380 TTTCATCAGA i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22166587 10 + 22939663 ACCCATTAGG i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47084075 9 + 47698779 AGCCACCCG- i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 114087 0 + 555560 C e mm10.chr2 181109150 48 + 182113224 I e aotNan1.NW_018500483v1 1947957 556 + 11732439 I e manLeu1.NW_012104365v1 5476741 0 + 6149316 C e saiBol1.JH378156 15540452 1027 + 16356641 M e chlSab2.chr2 89600337 0 - 90373283 C e cerAty1.NW_012001373v1 2928881 0 - 3785965 C e macNem1.NW_012014244v1 16085542 0 - 16982598 C e rheMac8.chr10 91982462 0 - 92844088 C e gorGor5.CYUI01015750v1 773539 0 - 1017659 C a score=301617.000000 s hg38.chr20_KI270871v1_alt 24107 66 + 58661 GTCAGACCACACTCCAGAGACTCACACACCCCCCAATTCATC-AGGGTCAGACCACGCCCCAGGGAC----- s panTro5.chr20 65593917 66 + 66533130 GTCAGACCACACTCCAGAGACTCACACACCCCCCAATTCATC-AGGGTCAGACCACGCCCCAGGGAC----- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362260 66 + 62195757 GTCAGACCACACTCCAGAGACTCACACACCCCCCAATTCATC-AGGGTCAGACCACGCCCCAGGGAC----- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773539 44 - 1017659 ----------------------CACACACACCCCAATTCATC-AGGGTCAGACCACGCCCCAGGGAC----- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264108 66 - 110113093 GTCAGACCACGCTCTGGGGACCCACACACCCCCCAATTCATC-AGGGTCAGACCACGCTCCGGGGAC----- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982462 39 - 92844088 ---------------------------ACACCCTAATTCATC-AGGGTCAGACCACGCCCCGGGAAC----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95629953 64 + 96509753 GTCAGGCCACATCCCAGGGA--CCCCCACACCCTAATTCATC-AGGGTCAGACCACGCCCCGGGAAC----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085542 38 - 16982598 ---------------------------ACACCCCAATTCATC-AGGGTCA-ACCACGCCCCGGGAAC----- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928881 39 - 3785965 ---------------------------ACACCCCAATTCATC-AGGGTCAGACCACGCCCCGGGAAC----- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600337 40 - 90373283 --------------------------CACACCCCAATTCATC-AGGGTCAGACCACGCCCTGGGAAC----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476741 40 + 6149316 --------------------------CACAACCCAATTCATC-AGGGTCAGACCACGCCCCGGGAAC----- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709409 64 - 5823884 GTCAGGCCACACCCCAGGGA--CCCCCACACCCCAATTCATC-AGGGTCAGACCACGCCCCGGGAAC----- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420218 64 + 159171411 GTCAGGCCACACCCCGGAAAC-CCCACAC-CCCCAATTCATC-AGGGTCAGGCCACACTCCGGGGAC----- i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 386904 64 + 1231380 GTCAGGCCACACCCCAGGGAC-CCCACGC-CCCCAATTCATC-AGAGTCAGACCACACTCCAGGGAC----- i cebCap1.NW_016107870v1 C 0 I 1364 s aotNan1.NW_018500483v1 1948513 65 + 11732439 GTCAGACCACGCCCCAGGGAC-CCCACACACCCCAACTCCTC-AGGGTCAGACCACGCCCCCGGGAC----- i aotNan1.NW_018500483v1 I 556 C 0 s otoGar3.GL873542 22166597 63 + 22939663 GTCAGGCCACATCCCAGGA---CCCACATCCTCCAACCCATCAAGGGTCAGGCTACATCCTGGGAC------ i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47084084 41 + 47698779 --CAGACCACGCTGCAGAAA-------ACAC---------TC-GGATTCAGA----GCCTCTGG-------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114087 19 + 555560 -----------------------------------------------------CACACCCAGCGGCCGTAGC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181109150 48 + 182113224 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=9400.000000 s hg38.chr20_KI270871v1_alt 24173 5 + 58661 --TCACA s panTro5.chr20 65593983 5 + 66533130 --TCACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362326 5 + 62195757 --TCACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773583 5 - 1017659 --TCACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264174 5 - 110113093 --CCACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982501 5 - 92844088 --CCATG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630017 5 + 96509753 --CCATG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085580 5 - 16982598 --CCATA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928920 5 - 3785965 --CCATG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600377 5 - 90373283 --CCATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476781 5 + 6149316 --CCATG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709473 5 - 5823884 --CCATG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420282 4 + 159171411 ---CCCA i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1948578 5 + 11732439 --TCACA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22166660 4 + 22939663 --CCAC- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 114106 5 + 555560 TCCCA-- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181109150 48 + 182113224 I e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e canFam3.chr24 47084125 0 + 47698779 C e saiBol1.JH378156 15540452 1027 + 16356641 M a score=250484.000000 s hg38.chr20_KI270871v1_alt 24178 52 + 58661 CACCCCCCAGTTCATCAGGGTCAGACCCGT-----CTCCACCGATCCAT----GCCTCCCC s panTro5.chr20 65593988 52 + 66533130 CCCCCCCCACTTCATCAGGGTCAGACCCGT-----CTCCACCGATCCAT----GCCTCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362331 52 + 62195757 CCCCCCCCAGTTCATCAGGGTCAGACCCGT-----CTCCACCGATCCAT----GCCTCCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773588 52 - 1017659 CACCCCCCAGTTCATCAGGGTCAGACTCGT-----CTCCACTGATCCAT----GCCTCCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264179 52 - 110113093 CACCCCCCAATTCATCAGGGTCAGACCCAT-----CTCCACCGATCCAT----GCCTCCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982506 51 - 92844088 TCTCCCAC-CTTCATCAGGGTCAGACCCGT-----CTCCACTGATCCAT----ACCTCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630022 51 + 96509753 TCTCCCAC-CTTCATCAGGGTCAGACCCGT-----CTCCACTGATCCAT----ACCTCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085585 51 - 16982598 TCTCCCAC-CTTCATCAGGGTCAGACCCAT-----CTCCACTGATCCAT----ACCTCCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928925 51 - 3785965 TCTCCCAC-CTTCATCAGGGTCAGACCCGT-----CTCCACTGATCCAT----ACCTCCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600382 51 - 90373283 TCCCCCAC-CTTCACCAGGGTCAGACCCGT-----CTCCACTGATCCAT----ACCTCCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476786 51 + 6149316 TCTCCCAC-CTTCATCAGGGTCAGACCCGT-----CTCCACTGATCCAT----ACCTCCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709478 51 - 5823884 TCCCCCAC-CTTCACCAGGGTCAGACCCGT-----CTCCACTGATCCAT----ACCTCCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420286 48 + 159171411 CACCCCAA-ATTCATCAGGGTCAGGCCACA-----CCCCGGGGACCC-------CACACCC i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22166664 56 + 22939663 ----CCCT-TTTCAGCACATTCTGCTGCCTAGGGGTTCCACCTTCCCATTTCACTCTCCAC i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47084125 37 + 47698779 ---------CTTCCAGAAGCTCGGAGGCAA-----C------GACCCAG----GACACCCC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114111 21 + 555560 ----------------------------CT-----CCCCAC---TCCCT----GACCCTCC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181109150 48 + 182113224 I e aotNan1.NW_018500483v1 1948583 0 + 11732439 C e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=300197.000000 s hg38.chr20_KI270871v1_alt 24230 61 + 58661 CACCTT----CATCAAGGTCAGACTA-ATCCAGGAACCCATATCCCCACAATTTGTCAGCATCAAG s panTro5.chr20 65594040 62 + 66533130 CACCTT----CATCAAGGTCAGACTACATCCAGGAACCCACGTCCCCACAATTTGTCAGCATCAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362383 62 + 62195757 CACCTT----CATCAAGGTCAGACTACATCCAGGAACCCACGTCCCCACAATTTGTCAGCATCAAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773640 62 - 1017659 CACCTT----CATCAAGGTCAGACTACATCCAGGAACCCACATCCCCACAATTTGTCAGCATCAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264231 62 - 110113093 CACCTT----CATCAAGGTCAGACTGCATCCAGGAACCCACATCCCCACAATTCGTCAGCATCAAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982557 62 - 92844088 CACCTT----CATCAGGGTCAGACTGCATCCGGGGACCCGCGTCCCCACAATCCATCAGCACCAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630073 62 + 96509753 CACCTT----CATCAGGGTCAGACTGCATCCGGGGACCCGCGTCCCCACAATCCATCAGCACCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085636 62 - 16982598 CACCTT----CATCAGGGTCAGACTGCATCCGGGGACCCGCGTCCCCACAATCCATCAGCACCAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2928976 62 - 3785965 CACCTT----CATCAGGGTCAGACTGCATCCAGGGACCCGCGTCCCCACAATCCATCAGCACCAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600433 62 - 90373283 CACCTT----CATCAGGGTCAGACTGCATCCAGGGACCCGAGTCCCCACAATCCATCAGCACCAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476837 62 + 6149316 CACCTT----CATCAGGGTCAGACTGCATCCAGGGACCCGCGTCCCCACAATCCATCAGCACCAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709529 62 - 5823884 CACCTT----CACCACGGTCAGACTGCACCCAGGGACCCGCGTCCCCACAATCCATCAGCATCAAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420334 62 + 159171411 CAAATT----CATCAGGGTCAGGCCACACCCCGGGGACCCCACACCCCAAATTCATCAGGGTCAGG i calJac3.chr5 C 0 I 179 s otoGar3.GL873542 22166720 47 + 22939663 CACTCTTTCACTCTAAGGCCAGACT------AGGAG-------------AAGCCCTTAATCTTAGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109198 38 + 182113224 CACCTT----C------------CTACATCCTTGGA-----------ATTATCTAGCACTTCCAG- i mm10.chr2 I 48 C 0 s canFam3.chr24 47084162 5 + 47698779 ----------------------------------------CGCCC--------------------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114132 43 + 555560 AACCTT----CGCAGAGCCCAGGCTG------GGAACGAACGCTC----GATTCAGA--------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1948583 0 + 11732439 C e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=2006962.000000 s hg38.chr20_KI270871v1_alt 24291 393 + 58661 AGGAAGGAACCCTCTGGCTTGCAGGAGACATGGCAGGACCCACACTGAACTCAGAGTGGC--CTCTTTCCCTTCCACACAGAAGAGTCTGCAGGCCCATCTTGAAGGGCACACAGTGAAGGGGACACCGGGGCCAGC----CTCTTGCCGTGCACCAG-----CTGCCCTGCCCTGCCCTGCCCT------GGGGCAACA----AGGGTTGACAGGGCCCCTCCACCTCCCTCTGAGCTGGGTGG--GCCTCACTGCCTAGAGACCCATGAGGGACCTGTGTCACCAG-CCGCCCTGCTCCTGGT-CA--------CAAGGACCTC--CTGCTCAGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTAACAGAGCCCCCTGAAGCTACAGCCGCAGCCTTGGGCATGCTCCTGTCGGGGCTGGGGA s panTro5.chr20 65594102 398 + 66533130 AGGAAGGAACCCTCTGGCTTGCAGGAGACATGGCAGGACCCACACTGAACTCAGAGTGGCCTCTCTTTCCCTTCCACACGGAAGAGTCTGCAGGCCCATCTTGAAGGGCACACAGTGAAGGGGACACCGGGACCAGC----CTCTCACCGTGCACCAGctgccctgccctgccctgccctgccct------gGGACAACA----AGGGTTGACAGGGCCCCTCCACCTCCCTCTGAGCTGGGTGG--GCCTCACTGCCTGGACACCCACGAGGGACCTGTGTCACCAG-CCGCCCTGCTCCTGGT-CA--------CAAGGACCTC--CTGCTCAGCCCCACTCAGACT--GAGGGGCCACCAGTGACTCACAGAGACCCCCGAAGTGACAGCCGCAGCCTTGGGCATGCTCCTGCCGGGGCTGGGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362445 400 + 62195757 AGGAAGGAACCCTCTGGCTTGCAGGAGACATGGCAGGACCCACACTGAACTCAGAGTGGCCTCTCCTTCCCTTCCACACGGAAGAGTCTGCAGGCCCATCTTGAAGGGCACACAGTGAAGGGGACACTGGGACCAGC----CTCTCACCGTGCACCAGctgccctgccctgccctgccctgccct------gGGACAACA----AGGGTTGACAGGGCCCCTCCACCTCCCTCTGAGCTGGGTGG--GCCTCACTGCCTGGACACCCACGAGGGACCTGTGTCACCAG-CCGCCCTGCTCCTGGT-CA--------CAAGGACCTC--CTGCTCAGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTCACAGAGCCCCCCGAAGTGACAGCCGCAGCCTTGGGCATGCTCCTGCCAGGGCTGGGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 773702 389 - 1017659 AGGAAGGAACCCTCTGGCTTGCAGGAGACATGGCAGGACCCACACTGAACTCAGAGTGGCCTCTCTTTCCCTTCCACACGGAAGGGTCTGCACGCCCATCTTGAAGGGCACACAGTGAAGGGGACACCGGGGCCAGC----CTCTCACCGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AGGGTTGACAGGGCCCCTCCACCT-CCTCTGAGCTGGGTGG--GCCTCACTGCCTGGAGACCCACGAGGGACCTGTGTCACCAG-CCGCCCTGCTCCTGGT-CA--------CAAGGACCTC--CTGCTCAGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTAACAGAGCCTCCCGAAGCTACAGCCGCAGCCTTGGGCATGCTCCTGCCGGGGCTGGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264293 393 - 110113093 AGGAAGGAACCCTTTGGCTTGCAGGAGACATGGCAGGACCCACACTGAACCCAGGGTGGCCTCTCTTTCCCTTCCACACGG-AGAGTCTGCACGCCCATCTTGAAGGGCACACAGTGAAGGGGACACCAGGGCCAGC----CTCCCGCCGTGCACCAG-----CTGCCCTGCCCTGCCCTGCCCT------GGG-CAACA----AGGGTTGACAGGGCCCCTCCACCTCCCTCTGAGCTGGGTGG--GCCTCACTGCCTGGAGACCCACAAGGGAGCTGTGTCACCAG-CCGCCCTGCTCCTGGT-CA--------CAAGGACCTT--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAATGACTAACAGAGCCCCCCGAAGCTACAGCTGCAGCCCTGGGCATGCTCCTGCCGGGGCTGGAGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91982619 389 - 92844088 AGGAAAGAACCCACTGGCTTGCAGGAGACATGGCAGGGCCCACACTGAACTCAGGGTGGCCTCTCCTTCCCTTCCACCCGGAAGAGTCTGCACACCCATCTTGAAGGGCACACAGTGAAGGAACCACCGGGGCCAGC----CTCTCGCCGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AAGGTTGGCAGGGCCCCTCCACCTTCCTCTGAACTGGGTGG--GCCTCACTGCGTGGAGACCCACGAGGGAGCTGTGTCACCAG-CTGCCCTGCCCCTGGT-CA--------CAAGGACGTC--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTAACAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTAGGGCTGGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630135 389 + 96509753 AGGAAAGAACCCACTGGCTTGCAGGAGACATGGCAGGGCCCACACTGAACTCAGGGTGGCCTCTCCTTCCCTTCCACCCGGAAGAGTCTGCATACCCATCTTGAAGGGCACACAGTGAAGGAACCACCGGGGCCAGC----CTCTCGCCGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AAGGTTGGCAGGGCCCCTCCACCTTCCTCTGAACTGGGTGG--GCCTCACTGCGTGGAGACCCACGAGGGAGCTGTGTCACCAG-CCGCCCTGCCCCTGGT-CA--------CAAGGACATC--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTAACAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTAGGGCTGGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16085698 389 - 16982598 AGGAAAGAACCCACTGGCTTGCAGGAGACATGGCAGGGCCCACACTGAACTCAGGGTGGCCTCTCCTTCCCTTCCACCTGGAAGAGTCTGCATACCCATCTTGAAGGGCACACAGTGAAGGAACCACCGGGGCCAGC----CTCTCGCCGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AAGGTTGGCAGGGCCCCTCCACCTTCCTCTGAACTGGGTGG--GCCTCACTGCGTGGAGACCCACGAGGGAGCTGTGTCACCAG-CCGCCCTGCCCCTGGT-CA--------CAAGGACGTC--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTAACAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTAGGGCTGGGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929038 388 - 3785965 AGGAAAGAACCCACTGGCTTGCAGGAGACATGGCGGGGCCCACACTGAACTCAGGGTGGCTTCTCCTTCCCTTCCACCCGGGAGAGTCTGCACACCCATCTTGAAGGGCACA-AGTGAAGGAACCACCACGGCCAGC----CTCTCGCGGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AAGGTTGGCAGGGCCCCTCCATCTTCCTCTGAACTGGGTGG--GCCTCACTGCCTGGAGACCCACGAGGGAGCTGTGTCACCAG-CCACCCTGCCCCTGGT-CA--------CAAGGACATC--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAGGGACTAACAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTAGGGCTGGGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600495 390 - 90373283 AGGAAAGAACCCACTGGCTTGCAGGAGACCTGGCGGGGCCCACGCTGAACTCAGGGTGGCCTCT-CTTCCGCTCCACCCGGAAGAGTCTGCACACCCATCTTGAAGGGCACACAGTGAAGGAACCACCCGGGCCAGC----CTCTTGCTGTGCACCAG----------CTGCCCTGCCCTGCCCTGCCCTGGGGGCAACA----AAGGTTGGCAGGGCCCCTCCACCTTCCTCTGAACTGGGTGG--GCCTCACTGCCTGCAGACCCACAAAGGAGCTGTGTCACCAG-CCGCCCTGCCCCTGGT-CA--------CAGGGACGTC--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAGTG----ACAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTGGGGCTGGAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5476899 389 + 6149316 AGGAAAGAACCCACTGGCTTGCAGGAGACATGGCGGGGCCCACACTGAACTCAGGGTGGCCTCTCCTTCCCTTCCACCCAGAAGAGTCTGCACACCCATCTTGAAGGGCACACAGTGAAGGAACCACCGCGGCCAGC----CTCTCGCCGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AAGGTTGGCAGGGCCCCTCCACCTTCCTCTGAACTGGGTGG--GCCTCACTGCCTGGAGACCCACGAGGGAGCTGTGTCACCAG-CCGCCCTGCCCCTGGT-CA--------CAAGGACGTC--CTGCTGGGCCCCACTCAGACTAAGAGGGGCCACCAGTGACTAACAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTAGGGCTGGGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709591 388 - 5823884 AGG-AAGAACCCTCTGGCTTGCAGGAGACATGGCAGGGCCCACACTGAACTCAGGGTGGCCTCTCCTTCCCTTCCACGCGGAAAAGTCTGCACACCCATCTTGAAGGGCACACAGTGAAGGAACCACCAGGGCCAGC----CTCTCGCCGTGCACCAG----------CTGCCCTGCCCTGCCCT------GGGGCAACA----AAGGTTGGCAGGGCCCCTCCACCTTCCTCTGAACTGGGTGG--GCCTCACTGCCTGGAGACCCATGAGGGAGCTGTGTCACCAG-CCGCCCTGCCCCTGGT-CA--------CAAGGACGTC--CTGCTGGGCTCCACTCAGACTAAGACGGGCCACCAGTGACTAGGAGAG-CCCCTGAAGCTACAGCCACAGCCCTGGGCATGCTCCTGCTGGGGCTGGGGA i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22166767 367 + 22939663 GTCAAGGAAATATCTGTCTTGTGGGTGATACAGCTGGACCCATGGTGGAACCCAGTTG--------------TATACACATAAATATCTGTGAGCCCTTGGGGAGTGGCTTGCTGTGAAGCAGCAGC--AGCCCCAC----CCATAGCCCTGCACCAA----------CTGCCCTTCTGTGCCCC------ACTGCTGCAAGGCAGGGTTAGCAGAGGTCTTCCCTTTTGCTTTAA-----GTGGACGCTTTGTCCCATAAAGACTTGAGAAGGGCCTAGTTCACCAGACAGCAGTGCTGCAGCT-GC--------TGAGACCCCA--CTGTGCAGCCCCATTTCAAGTAGAAACAGCTGCCAGTAGCCCACAGAGCAGCCAGAAGACAT-GCCGGATCCT------AGCTTCAG--AGGGGCACGGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109236 259 + 182113224 GCCCAGGCAACCTCTGCTTAGCAGAAG-----GCAGTGCCTA-------------GTGATC---------------------------------CCAATC------------------AGGAGCCCTCCTAACCTGC----C-----CTGTCCACCAA---------------------------------GCAGCTACA----------GACAGCTGCCCTCT-----------------GTCA--GCCCCAGTGC-------------AGCAGTCAATATAACCATCCCACTCTGTATGTGGTACA--------TGAGAACCCCCACTATCTAGAATCATTCAGAT--GGGAAAGCCA-CAGAAATCAACAGAGCTATGTGAGAAGGC-----CTGATCTGAAGACACTAGAAGTGTGCCTAGGGA i mm10.chr2 C 0 C 0 s canFam3.chr24 47084167 239 + 47698779 -AGAGAGGACCCTCCTCCCTGC-----------------------------------------------TCATCTCTAAGGAGGCAAGTGCAGGCCCC--------GGCTCTTGGTG-AGCGGCCACCGGGAACAGCAGGGTCCCCCCCACACACCAG-------------------------CT------ACGGTGGCA-------GTTGACACAGCCATC-------------------------GCCCCTCTGC------------AAGGGTCCCCTGTGACC---TCTCACGGGTCCAGGT-CAGCACACAGCACGACCCTG--CTGGCCAATCTCA---GGGCTGCGAGGACCCA-CAGTGAGCGACAGAT-----------------------------------------------GAGGA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114175 233 + 555560 GCAGAGGAAACCTCCCGCTTCTAGAAGGCAAGGCGGTGCCCACACGGGACAC------GCCTC----------------------GCCTGCTGAC-----------------------AGGTGCCACCAGG---AGC------------GTGTCCCGA----------GGACTCCGCCCCACCCC------AG-----------------------------CCACCTTCCTCCCAGGGAAGAGG--ACC------CCTGGGGACCTTCGGGCAGCC---GTCCCCGG-CC------CTCCTGGG-CA-----------------G--CTGCGCGGAGCCGCCGGCTCT------GGCCGCCTGTG-----------CTCC--------------CAGCCCACGGCCT-------------CCGAG-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1948583 0 + 11732439 C e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M e calJac3.chr5 57420396 179 + 159171411 I a score=657146.000000 s hg38.chr20_KI270871v1_alt 24684 119 + 58661 A-CCCC---CACTCCAGTCCTTGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGAGAGCT-GCTCCTGCCCCAGGTCCCACCTAGGGAACTGTG s panTro5.chr20 65594500 119 + 66533130 A-CCCC---CACTCCAGTCCTTGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGAGAGCC-GCTCCTGCCCCAGGTCCCACCTAGGGAACTGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362845 119 + 62195757 A-CCCC---CACTCCAGTCCTTGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGAGAGCC-GCTCCTGCCCCAGGTCCCACCTAGGGAACTGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774091 118 - 1017659 A-CCCC---CACTCCAGTCCTTGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGAGAGCC-GCTCCTGCCCCAGGT-CCACCTAGGGAACTGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264686 119 - 110113093 A-CCCC---CATTCCAGTCCTTGGGCAACAAGGCCTCTGACCCTGAGCTGCCAT-------------CTCCAGCTC-CTGGGGACTGTGCA-CCTGCTGAGAGCC-GCTCCTGCCCCAGGTCCCTCCTAGGGAACTGTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983008 120 - 92844088 ACCCCC---CACTCCAGTCCTTGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGTA-CCTGCTGGGAGCC-GCTCCTGCCCCAGGTCCCACCCAGGGAACTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630524 120 + 96509753 ACCCCC---CACTCCAGTCCTCGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGAA-CCTGCTGGGAGCC-GCTCCTGCCCCAGGTCCCACCCAGGGAACTGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086087 120 - 16982598 ACCCCC---CACTCCAGTCCTCGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGGGAGCC-GCTCCTGCCCCAGGTCCCACCCAGGGAACTGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929426 120 - 3785965 ACCCCC---CACTCCAGTCCTCGGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGAA-CCTGCTGGGAGCC-GCTCCTGCCCCAGGTCCCACCCAGGGAACTGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89600885 120 - 90373283 ACCCCC---CACTCCAGGCCTCGGGGAACAAGGCCTCTGACCCTGAGTTGCCAC-------------CTCCAGCTC-CTGGGGGCTATGGA-CTTGCTGGGAGCC-GCTCCTGCTCCAGGTCCCACCCAGGGAACTGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477288 120 + 6149316 ACCCCC---CACTCCAGTCCTCGGGGAATAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGGGAGCT-GCTCCTGCCCCAGGTCCCACCCAGGGAACTGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4709979 119 - 5823884 A-CCCC---CACTCCAGTCCTCAGGGAACAAGGCCTCTGACCCTGAGCTGCCAC-------------CTCCAGCTC-CTGGGGGCTGTGGA-CCTGCTGGGAGTC-GCTCCTGCCCCAGGTCCCACCCAGGGAACTGTG i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22167134 103 + 22939663 G-CCCTGGGGACACTAG--CTTGGGGCTCAGGGGGT-GGGCCCT-----------------------------CTC-CTGGGGACTATAGACCCTGCTGAGAGCCTACTCCTGGCCCAGATCC--CTCAGTAGATGGTG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109495 97 + 182113224 GGCCGC------------------------AGGCATCTAAACCAGAGCAGCCTCACTCTGGTCTAGTCTGGAGCTCTCTAGGGTCTGTAAA-CCCCACAGGA-CT-G----TGTCCAAGTTC-----------ACAGTT i mm10.chr2 C 0 C 0 s dasNov3.JH567899 114408 46 + 555560 ---------CACACTGGTGCCCAGGGAGC--------------------------------------CTGCGGCTG-T--------------CCTGCTG-------GC-----CCCAAGA------------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1948583 0 + 11732439 C e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e canFam3.chr24 47084406 0 + 47698779 C e saiBol1.JH378156 15540452 1027 + 16356641 M e calJac3.chr5 57420396 179 + 159171411 I a score=198031.000000 s hg38.chr20_KI270871v1_alt 24803 37 + 58661 CC--CAGG-GGCCTGTGGTCA-----CCTCGGGAGCCTACAAGAC s panTro5.chr20 65594619 37 + 66533130 CC--CAGG-AGCCTGTGGTCA-----CCTCGGGAGCCTGCAAGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61362964 37 + 62195757 CC--CAGG-GGCCTGTGGTCA-----CCTCGGGAGCCTGCAAGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774209 37 - 1017659 CC--CAGG-GGCCTGTGGTCG-----CCTCGGGAGCCTACAAGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264805 37 - 110113093 CC--CAGG-GGCCTGTGGTCA-----CCTCGGGAGCCTACAAGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983128 37 - 92844088 CC--CAGG-GGCCTGTGGTCA-----CCTGGGGAGCCTACAAGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630644 37 + 96509753 CC--CAGG-GGCCTGTGGTCA-----CCTGGGGAGCCTACAAGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086207 37 - 16982598 CC--CAGG-GGCCTGTGGTCA-----CCTGGGGAGCCTACAAGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929546 37 - 3785965 CC--CAGG-GGCCTGTGGTCA-----CCTGGGGAGCCTACAAGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601005 37 - 90373283 CC--CAGG-GGCCTGTGGTCA-----CCTCGGGAGCCTACAAGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477408 37 + 6149316 CC--CAGG-GGCCTGTGGTCA-----CCTGGGGAGCCTACAAGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710098 37 - 5823884 CC--CAGG-GGCCTGTGGTCA-----CCACGGGAGCCTACAAGAC i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22167237 20 + 22939663 CCTACAGT-GGCCTGTG------------------------AGGC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109592 43 + 182113224 CA--CAGGTGGGCCATGGCCAAGCCTTATGGGGAGCCTCTAAAAC i mm10.chr2 C 0 I 2 s canFam3.chr24 47084406 10 + 47698779 CC--CAGG-AGTC-------------------------------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114454 14 + 555560 CC--CCGG-GGCCAGGC---------------------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1948583 0 + 11732439 C e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M e calJac3.chr5 57420396 179 + 159171411 I a score=24587.000000 s hg38.chr20_KI270871v1_alt 24840 6 + 58661 CTCGTC s panTro5.chr20 65594656 5 + 66533130 CTCAT- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363001 5 + 62195757 CTCGT- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774246 6 - 1017659 CTCGTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264842 5 - 110113093 CTCGT- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983165 6 - 92844088 CTCGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630681 6 + 96509753 CTCGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086244 6 - 16982598 CTCGTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929583 6 - 3785965 CTCGTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601042 6 - 90373283 CTCATC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477445 6 + 6149316 CTCGTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710135 6 - 5823884 CTCATC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420575 6 + 159171411 CTCACC i calJac3.chr5 I 179 I 1 s otoGar3.GL873542 22167257 6 + 22939663 CTCGTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109637 4 + 182113224 CTAA-- i mm10.chr2 I 2 C 0 s dasNov3.JH567899 114468 6 + 555560 CCCACC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1948583 0 + 11732439 C e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e canFam3.chr24 47084416 0 + 47698779 C e saiBol1.JH378156 15540452 1027 + 16356641 M a score=1959173.000000 s hg38.chr20_KI270871v1_alt 24846 191 + 58661 CCC--CTCCAAGGCAGGCAG-GGGCA------GCTGGACTTACTGCAGGCAGCGCGAAGAAGGAGACACCGATGAGGGTGAAGGTTGCCGCAAGGAGCCTGCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCTAGTCACACGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC s panTro5.chr20 65594661 191 + 66533130 CCC--CTCCAAGGCAGGCAG-GGGCA------GCCGGACTTACTGCAGGCAGCGCAAAGAAGGAGACACCGATGAGGGTGAAGGTCGCCGCAAGGAGCCTGCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCTAGTCACACGAA--GGG----------------------------------------------CCTGCTCG-------------CACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363006 191 + 62195757 CCC--CTCCAAGGCAGGCAG-GGGCA------GCCGGACTTACTGCAGGCAGCGCAAAGAAGGAGACACCGATGAGGGTGAAGGTCGCCGCAAGGAGCCTGCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCTAGTCACACGAA--GAG----------------------------------------------CCTGCTCG-------------CACCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774252 191 - 1017659 CCC--CTCCAAGGCAGGCAG-GGGCA------GCCGGACTTACTGCAGGCAGCGCGAAGAAGGAGACACCGATGAGGGTGAAGGTCGCCGCAAGGAGCCTGCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCTAGTCACACGAA--GGA----------------------------------------------CCTGCTCA-------------CACCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109264847 191 - 110113093 CCG--CTCCACGGCAGGCGG-GGGCA------GCCGGACTTACCGCAGGCAGCGCAAAGAAGGAGACGCCGATGAGGGTGAAGGTCGCCGCCAGGAGCCTGCCGTTCCAGGTCTGGGGGTACTTGTCACCATAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCTAGTCACACGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983171 190 - 92844088 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGCGCGAAGAAGGAGACACCGATGAGGGTGAAGGTTGCCGCCAGGAGCCTGCCGTTCCAGGTCTGTGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCCGGTCACATGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630687 190 + 96509753 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGCGCGAAGAAGGAGACACCGATGAGGGTGAAGGTTGCCGCCAGGAGCCTGCCGTTCCAGGTCTGTGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCCGGTCACATGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086250 190 - 16982598 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGCGCAAAGAAGGAGACACCGATGAGGGTGAAGGTTGCCGCCAGGAGCCTGCCGTTCCAGGTCTGTGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCCGGTCACATGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929589 190 - 3785965 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGCGCGAAGAAGGAGACGCCGATGAGGGTGAAGGTTGCCGCCAGGAGCCTGCCGTTCCAGGTCTGCGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCCGGTCACATGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601048 190 - 90373283 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGCGCGAAGAAGGAGACACCGATGAGGGTGAAGGTTGCCGCCAGGAGCCTGCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCACAGGCTCCGGTCACATGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477451 190 + 6149316 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGTGCGAAGAAGGAGACACCGATGAGGGTGAAGGTTGCCGCCAGGAGCCTGCCGTTCCAGGTCTGCGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGACCGCAGGCTCCGGTCACATGAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710141 189 - 5823884 CCC--CTCCAAGGCAGGCA--GGGCA------GCTGGACTTACTGCAGGAAGCGCGAAGAAGGAGACGCCGATGAGGGTGAAGGTTGCCGCCAGGAGCCGGCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTCAGCGTGATCTGTGGGCCCGCAGGCTCCGGTCACATGAA---GG----------------------------------------------CCTGCTCA-------------CACCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420582 190 + 159171411 CCCGACTCCAAGGC-AGCG--GGGCA------GCCAGACTTACTGCAGGAAGCGCGAAGAATGAGACCCCAATGAGGGTGAAGGTCGCCGCGAGGAGCCTGCCATTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCAATGGTGGTTAGCGTGATCTGCAGGACCGGAGGCTCCAGTCACG-GAA--GGG----------------------------------------------CCTGCTCA-------------CACCC i calJac3.chr5 I 1 C 0 s aotNan1.NW_018500483v1 1948583 189 + 11732439 CCC--CTCCAAGGCGGGCG--AGGCA------GCCAGACTTACCGCAGGAAGCGCAAAGAACGAGACCCCGATGAGGGTGAAGGTGGCCGCCAGGAGCCTGCCGTTCCAGGTCTGCGGGTACTTGTCTCCGTAGCCGATGGTGGTCAGCGTGATCTGCGGGACCGCAGGCTCCGGTCACG-GAA--GGG----------------------------------------------CCTGCTCG-------------CACCC i aotNan1.NW_018500483v1 C 0 I 249 s otoGar3.GL873542 22167263 178 + 22939663 TCC--CACAAAGGCAGAAAG-GGGCACAGGATGCAGGACTCACCGCCGGGAGAGCGAAGAAGGAAACACCGATGAGGGTGAAGGTTGCTGCCAGAAGCCTCCCGTTCCAGGTCTGCGGATACTTGTCCCCATAGCCAATGGTCGTCAGGGTGATCTGTGGGGTGGCAGGCTCTGGTCATAC-------------------------------------------------------------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109641 249 + 182113224 CAT--CTCCAGAGTAGGAA--GGTGC------GCGGGACTCACAGCAGGAAGAGCAAAGAACGAGACACCAATGAGGGTAAAGGTCGCTGCCAGCAGCCTCCCGTTCCAGGTCTGAGGGTACTTGTCCCCGTAGCCAATGGTCGTCAGGGTGATCTGAGGGGTAAGGGGCTCTGGTTACTTGGG--CAGGCTGGAAATGGCCTACCACAGAGGTCGCAATCCCAGGCCAGATGTCCCTGCTCAGCCATGGGAAGTTCATCC i mm10.chr2 C 0 I 6 s canFam3.chr24 47084416 172 + 47698779 ----------------------------ACAGGCAGGACTTACCGCAGGAAGAGCAAAGAAGGAGACGCCAATGAGGGTGAAGGTGGCGGCCAGGAGCCTCCCGTTCCAGGTCTGGGGGTACTTGTCCCCATAACCAATGGTCGTCAGGGTGATCTGTGGGGCACCAAG-GCCGGTCAC-TGAGCCGGG----------------------------------------------CCTGGCCG-------------TGACC i canFam3.chr24 C 0 I 3 s dasNov3.JH567899 114474 148 + 555560 -------------------GAAGGCG------GCAGGACTCACTGCGGGAAGAGCGAAGAACGAGACGCCGATGAGCGTGAAGGTGGCCGCCAGGAGCCTCCCGTTCCAGGTCTGGGGGTACTTGTCCCCGTAGCCGATGGTCGTCAGCGTGATCTGTGGG----CGGCGCTCGGTC------------------------------------------------------------------------------------ i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=200734.000000 s hg38.chr20_KI270871v1_alt 25037 29 + 58661 CTGAGGGC----------AGG-CTGGACGCCCGCTGGCGA s panTro5.chr20 65594852 29 + 66533130 CTGAGGGC----------AGG-CTGGACGCCCGCTGGCGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363197 29 + 62195757 CTGAGGGC----------AGG-CTGGACGCCCGCTGGCGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774443 29 - 1017659 CTGAGGGC----------AGG-CTGGATGCCCGCTGGCGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265038 29 - 110113093 CTGAGGGC----------AGG-CTGGATGCCTGCCGGCGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983361 29 - 92844088 CTGAGGGC----------AGG-CTAGACGCCCGCAGGCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630877 29 + 96509753 CTGAGGGC----------AGG-CTAGACGCCCGCAGGCGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086440 29 - 16982598 CTGAGGGC----------AGG-CTAGACGCCCGCAGGCGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929779 29 - 3785965 CTGAGGGC----------AGG-CTAGACGCCTGCAGGCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601238 29 - 90373283 CTGAGGGC----------AGG-CTAGATGCCCGCAGGCGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477641 29 + 6149316 CTGAGGGC----------AGG-CTAGACGCCCGCAGGCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710330 29 - 5823884 CTGAGGGC----------AGG-CTAGACGCCCGCAGGCGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420772 27 + 159171411 --GAGGGC----------AGG-CAGGATGCCCGCCAGCAG i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22167441 26 + 22939663 ---AAGGC----------AGG-TAGGATGCTGGCCACCGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109896 28 + 182113224 TTTAGGGG----------AAG-CTGGACACTGATGGTCA- i mm10.chr2 I 6 C 0 s canFam3.chr24 47084591 39 + 47698779 GTGGAGGCCCATGACCCTGAC-CTGGACGCTCTTCCTCAG i canFam3.chr24 I 3 I 3 s dasNov3.JH567899 114622 30 + 555560 ATGGGGCC----------AGGACTGGGTGGCCACGGGAGG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1948772 249 + 11732439 I e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=437053.000000 s hg38.chr20_KI270871v1_alt 25066 58 + 58661 CTC-GGGGCTTGGGATGGGACAGATGCGG----------G-----GCCACCCCCGTGTCACCATCCACACGGAG s panTro5.chr20 65594881 58 + 66533130 CTC-GGGGCTTGGGATGGGACAGATGCGG----------G-----GCCACCCCCGTGTCACCACCCACATGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363226 58 + 62195757 CTC-GGGGCTTGGGATGGGACAGATGCGG----------G-----GCCACCCCCGTGTCACCACCCACATGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774472 58 - 1017659 CTC-GGGGCTTGGGATGGGACAGATGCGG----------G-----GCCACCCCCGTGTCACCACCCACACAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265067 58 - 110113093 CTC-GGGGCTTGGGATGGGACAGATGCGG----------G-----GCCATCCCCGTGTCACCACCCACACGGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983390 58 - 92844088 CTC-AGGGCTTGGGCTGGGACAGATGTGG----------T-----ACCACTCCCATGTCACCACCCACACAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630906 58 + 96509753 CTC-AGGGCTTGGGCTGGGACAGATGTGG----------T-----ACCACTCCCATGTCACCACCCACACAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086469 58 - 16982598 CTC-AGGGCTTGGGCTGGGACAGATGTGG----------T-----ACCACTCCCATGTCACCACCCACACAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929808 58 - 3785965 CTC-AGGGCTTGGGCTGGGACAGATGTGG----------T-----ACCACTCCCATGTCACCACCCACACAGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601267 58 - 90373283 CTC-AGGGCTTGGGTTGGGACAGATGTGG----------T-----ACCACCCCCATGTCACCACCCACACAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477670 58 + 6149316 CTC-AGGGCTTGGGCTGGGACAGATGTGG----------T-----ACCACTCCCATGTCACCACCCACACAGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710359 58 - 5823884 CTC-AGGGTTTGGGCTGGGACAGATGTGG----------T-----ACCACCCCCGTGTCACCACCCACACAGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420799 57 + 159171411 CTC-AGGGCTAAGGCTGGGACAGATTCGG----------G-----GCCACCCCCATGCCGCCACCCACACGGA- i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1949021 58 + 11732439 CTC-AGGGCTTAGGCTGGGACAGATTCGG----------G-----GCCACCCCCATGCCGCCACCCACACGGAG i aotNan1.NW_018500483v1 I 249 I 65 s otoGar3.GL873542 22167467 61 + 22939663 CTCGGGGGCCTGGGCTGGGACAGATGTGG----------GAGGCTGCCTCCTCTAAG--ACCACCTGCCCAGG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109924 56 + 182113224 -TT-CAGACTTCAGCT-GTACCTACAGGA----------G-----GTCATCCTTCCTTCATCATCCATACTAGT i mm10.chr2 C 0 C 0 s canFam3.chr24 47084633 67 + 47698779 CCA-AGGGCCTGGCACAGGGCAGGCTGGGCAGGCACAGAG-----GCCACCCCTCCCTCACCGCCCACACGAG- i canFam3.chr24 I 3 C 0 s dasNov3.JH567899 114652 31 + 555560 CCC-ACGGC-----------CAAGCACGA----------C-----GCCCTCCCAGCAG---------------- i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=374259.000000 s hg38.chr20_KI270871v1_alt 25124 54 + 58661 GCCCAGTGAGGCCAGGGTCGGTGT-----------CGGCCGCCCCTCA-----------TCCCCTGAGCCC----TCTCT s panTro5.chr20 65594939 54 + 66533130 GCCCAGTGAGGCCAGGGTCGGTGT-----------CGGCCGCCCCTCA-----------TCCCCTGAGCCC----TCTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363284 54 + 62195757 GCCCAGTGAGGCCAGGGTCGGTGT-----------CGGCCGCCCCTCA-----------TCCCCTGAGCCC----TCTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774530 53 - 1017659 GCCCAGTGAGGCCAGGGTCGGTGT-----------CGGCCG-CCCTCA-----------TCCCCTGAGCCC----TCTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265125 54 - 110113093 GCCCAGTGAGGCCAGGGTCGGTGT-----------CGGCCGCCCTTCA-----------TCCCCAGAGCCC----TCTCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983448 54 - 92844088 GCCCAGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCAGAGCCC----TCTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95630964 54 + 96509753 GCCCGGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCAGAGCCC----TCTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086527 54 - 16982598 GCCCAGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCAGAGCCC----TCTCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929866 54 - 3785965 GCCCAGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCAGAGCCC----TCTCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601325 54 - 90373283 GCCCAGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCGGAGCCC----TCTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477728 54 + 6149316 GCCCAGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCAGAGCCC----TCTCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710417 54 - 5823884 GCCCAGTGAGGCCAGGGTTGGGGT-----------CGGCCGCCCTTCA-----------TCCCCGGAGCCC----TCTCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420856 54 + 159171411 GCTGGGTGAGGCCAGGGTCAAGGT-----------GGGCTGCAGTTCG-----------TCCCTGGAGCCC----TCTCC i calJac3.chr5 C 0 I 12 s otoGar3.GL873542 22167528 57 + 22939663 ACCCAATAAGGCCAAGATCTGCGT------------GGCCACTCTCCC-----------TCCCTATAGCCCCAAGTCTGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181109980 51 + 182113224 GCCAAACAAGGCCAGAGTCAGCAT-----------AGGCTTTCCTTTA-----------TTCTACAATCCC----CA--- i mm10.chr2 C 0 C 0 s canFam3.chr24 47084700 72 + 47698779 GCCCAGTGAGGTCTGCATCTCAGCCTTCACCTCTGCGACACCCCTGCAACGTGTGAAACCCTCCAGATCCC----G---- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114683 47 + 555560 GCCCCGCGCCCCTCAGGGCTGGAC-----------TGACGG-----CA-----------CCCCCAAATCTC----TCT-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1949079 65 + 11732439 I e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=512737.000000 s hg38.chr20_KI270871v1_alt 25178 58 + 58661 CCTCTT-CCCCTACAGGCCA-GAAGCGGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA s panTro5.chr20 65594993 58 + 66533130 CCTCTT-CCCCTACGGGCCA-GAAGCGGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363338 58 + 62195757 CCTCTT-CCCCTATGGGCCA-GAAGCGGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774583 58 - 1017659 CCTCTT-CCCCTACAGGCCA-GAAGCGGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265179 58 - 110113093 CCTCTT-CCCCTACAGGCCA-GAAGCGGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983502 58 - 92844088 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631018 58 + 96509753 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086581 58 - 16982598 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929920 58 - 3785965 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601379 58 - 90373283 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477782 58 + 6149316 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710471 58 - 5823884 CCTCTT-CCCCTACAGGCCA-GAAGCAGGGTCCAGCCAAAGGCTGTGTCCCCATCTCACA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420922 58 + 159171411 CCTCTT-CCCCTACAGGCCA-GAAGCCGGGTCCAGCCAAAGGCTCTGTTGCTTCCTCACA i calJac3.chr5 I 12 C 0 s aotNan1.NW_018500483v1 1949144 58 + 11732439 CCTCTT-CCCTTACAGGCCA-GAAGCGGGGTCCGGCCAAGGGCTCTGTTGCCTCCTCACA i aotNan1.NW_018500483v1 I 65 C 0 s otoGar3.GL873542 22167585 58 + 22939663 CCTCAT-CTGCTACACAGTG-GAAGGGCAGTTGCCCCAAAGGCCCTGTTCCCTTTTCACA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181110031 53 + 182113224 -ATCTTAATTCTACA--CTA-AAAGGGGAACCATTCCCAAGGCT---CCCCTAATTCACA i mm10.chr2 C 0 I 1750 s canFam3.chr24 47084772 31 + 47698779 CCTCTT-CCCCTACTTTCCA-GGG---------------------------CAGCTCACA i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114730 56 + 555560 -CCTCT-CCCCAGCGTGCTGCGGGGAGGGGTCC--CTGCACACCCTGCTCCCACGCCACA i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=382792.000000 s hg38.chr20_KI270871v1_alt 25236 62 + 58661 TC-----GAGAACCAGAGGCCCAGCGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----AGCAGCCCCCA-C s panTro5.chr20 65595051 62 + 66533130 TC-----GAGAACCAGAGGCCCAGCGACGTGACTC-------------CCA---GGA-GGC---------------TCGGCTAGGAC----AGCAGCCCCCA-C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363396 62 + 62195757 TC-----GAGAACCAGAGGCCCAGCGACGTGACTC-------------CCA---GGA-GGC---------------TCGGCTAGGAC----AGCAGCCCCCA-C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774641 62 - 1017659 TC-----GAGAACCAGAGGCCCAGCGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----AGCAGCCCCGA-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265237 62 - 110113093 TC-----AAGAACCAGAGGTCCAGCGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----AGCAGCCCCCA-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983560 62 - 92844088 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCTCG-C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631076 62 + 96509753 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCTCG-C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086639 62 - 16982598 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCTCG-C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2929978 62 - 3785965 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCCCG-C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601437 62 - 90373283 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCCCA-C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477840 62 + 6149316 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCCCG-C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710529 63 - 5823884 TC-----GAGAACCAGAGGCCCAGTGACGTGACTC-------------CCA---CGA-GGC---------------TCGGCTAGGAC----GGCAGCCCCCACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57420980 62 + 159171411 TT-----GAGAGCCAGAGGGCAAGCAACGTGACTC-------------CCC---CAAGGGC---------------TCAGGCAGGAC----AGTGGCCCCCA-- i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1949202 63 + 11732439 TC-----GAGAGCCAGAGGGCAAGCGACGTGACTC-------------CCC---CGAGGGC---------------TCAGGTAGGAC----AGCGGCCCTCA-C i aotNan1.NW_018500483v1 C 0 I 136 s otoGar3.GL873542 22167643 71 + 22939663 CCC--AAGAAGACCAGGAGAACAACATTGTGACTT-------------TCACACCAG-GGCACA------------ACAGCTGAGAC----AGAGGATCCCA-C i otoGar3.GL873542 C 0 I 3 s canFam3.chr24 47084803 17 + 47698779 ----------------------------------------------------------------------------CTGGCCAGAGC----AGGAGC------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 114786 97 + 555560 --CCCAAGGGCACAGGGGGTCTCGGGTGGAGCCTCGGCCATCTGCTGGGCA---TAG-GGCGCACTGAAGCCATTTCCACCCAGGGCGTGGAGTCGGCCCCG-C i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181110084 1750 + 182113224 I e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=419939.000000 s hg38.chr20_KI270871v1_alt 25298 70 + 58661 TGCATCCCCGCCAGG-------TGAAGAGT---GCAGCTGGGGAG--AAGGGAGTGCCCAGAGGGACCCAGAGGAACGGGCA------ s panTro5.chr20 65595113 70 + 66533130 TGCATCCCCGCCAGG-------TGAAGAGC---GCAGCTGGGGAG--AAGGGAGTGCCCAGAGGGACCCAGAGGAACGGGCA------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363458 70 + 62195757 TGCATCCCCGCCAGG-------TGAAGAGC---GCAGCTGGGGAG--AAGGGAGTGCCCAGAGGGACCCAGAGGAACGGGCA------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774703 70 - 1017659 TGCATCCCCGCCAGG-------TGACGAGT---GCAGCTGGGGAG--AAGGGAGTGCCCAGAGGGACCCAGAGGAACGGGCA------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265299 70 - 110113093 CCCATCCCCGCCAGG-------TGGACAGC---GCAGCTGGGGAG--GAGAGAGTGCCCAGAGGGACCCAGAGGAACGGGCG------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983622 69 - 92844088 C-CATCCCCGCCGGG-------TGGAGAGC---GCAGCTGGGGAG--GAGGGAGTGCCAAGAGGGACCCAGAGGAACAGGCG------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631138 69 + 96509753 C-CATCCCCGCCGGG-------TGGAGAGC---GCGGCTGGGGAG--GAGGGAGTGCCGAGAGGGACCCAGAGGAACAGGCG------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086701 69 - 16982598 C-CATCCCCGCCGGG-------TGGAGAGC---GCAGCTGGGGAG--GAGGGAGTGCCGAGAGGGACCCAGAGGAACAGGCA------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930040 69 - 3785965 C-CATCCCCGCCGGG-------TGAAGAGC---GCAGCTGGGGAG--GAGGGAGTGCCGAGAGGGACCCAGAGGAACAGGCG------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601499 69 - 90373283 C-CATCCCCACCGGG-------TGGAGAGC---GCAGCTGGGGAG--GAGGGAGTGCCGAGAGGGACCCAGAGGAACAGGTG------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477902 69 + 6149316 C-CATCCCCGCCGGG-------TGGAGAGT---GCAGCTGGGGAG--GAGGGAGTGCCGAGAGGGACCCAGAGGAACAGGCG------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710592 69 - 5823884 C-CATCCCCGCCGGG-------CGGAGAGC---GCAGGTGGGGAG--GAGAGAGTGCCGAGAGGGACCCAGAGGAACAGGCA------ i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57421042 61 + 159171411 ---------ACCGGC-------TGCAGGGC---CCAGCTGGGGAG--ACGGGAGTGGCGAGAGGGACCCAGATAAATGGGCG------ i calJac3.chr5 C 0 I 77 s otoGar3.GL873542 22167717 56 + 22939663 TACAACCTCA-----------------------GAAGCTGGGGAGCCAAAGGCATGT---GAGGGACCCAGAGAAATGGGGT------ i otoGar3.GL873542 I 3 I 12 s canFam3.chr24 47084820 55 + 47698779 ----------CCagg-------gggaggga---gca----gggag--gaggg-gcgaggggagggagcaggaaggagagggt------ i canFam3.chr24 C 0 I 5 s dasNov3.JH567899 114883 72 + 555560 -TTTTCCCCGCCAGGCCCGGCCCGGAGGGCTCGGCGGCTTGGGTG--GGGGG--------CAGGCACCCAG-----CAGGCAAACACA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1949265 136 + 11732439 I e cebCap1.NW_016107870v1 386968 1364 + 1231380 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=610463.000000 s hg38.chr20_KI270871v1_alt 25368 69 + 58661 GGGCGTGCAGGGGGCTCGCTGAGCCTGAGCTGAGCTG------AGGCCAGAGGAG-AGGGGTGGGCAGGAGGAG---------GC s panTro5.chr20 65595183 69 + 66533130 GGGCGTGCAGGGGGCTCGCTGAGCCTGAGCTGAGCTG------AGGCCAGAGGAG-AGGGGTGGGCGGGAGGAG---------GC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363528 69 + 62195757 GGGCGTGCAGGGGGCTCGCTGAGCCTGAGCTGAGCTG------AGGCCAGAGGAG-AGGGGTGGGCGGGAGGAG---------GC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774773 68 - 1017659 -GGCGTGCAGGGGGCTCGCTGAGCCTGAGCTGAGCTA------AGGCCAGAGGAG-AGGGGTGGGCGGGAGGAG---------GC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265369 64 - 110113093 GGGTGTGCAGGGGGCTCGCTGAGCCTGAGCTG-----------AGGCCAGAGGAG-AGGGGTGGGTGGGAGGAG---------GC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983691 68 - 92844088 GGGCGTGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG--GGGGTGGGCGGGAGGAG---------GC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631207 68 + 96509753 GGGCGTGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG--GGGGTGGGCGGGAGGAG---------GC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086770 68 - 16982598 GGGCGTGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG--GGGGTGGGCGGGAGGAG---------GC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930109 68 - 3785965 GGGCGTGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG--GGGGTGGGCGGGAGGAG---------GC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601568 68 - 90373283 GGGCGTGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG--AGGGGTGGCGGGAGGAG---------GC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5477971 68 + 6149316 GGGCGTGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG--GGGGTTGGCGGGAGGAG---------GC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710661 69 - 5823884 GGGCATGCAGGGGGCTCGCTGAGCCTGACCTGAGCTG------AGGCCAGAGGAG-AGGGGTGGGTGGGAGGAG---------GC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57421180 70 + 159171411 GGGCATGCAGGGGGCTCCCCGAGCCTGACCTGAGCTG------AGGCCAGAGGAGAAGAGGTGGGCGGGAGGAG---------GC i calJac3.chr5 I 77 C 0 s cebCap1.NW_016107870v1 388332 70 + 1231380 GGGCTTGCAGGGGGCTCAGCGAGCCTGACCTGAGCTG------AGGCCAGAGGAGAAGAGGTGGGCGGGAGGAG---------GC i cebCap1.NW_016107870v1 I 1364 C 0 s aotNan1.NW_018500483v1 1949401 70 + 11732439 GGGCGTGCAGGGGGCTCACCAAGCCTGACCTGAGCTG------AGGCCAGAGAAGAAGAGGTGGGCGGGAGGAG---------GC i aotNan1.NW_018500483v1 I 136 C 0 s otoGar3.GL873542 22167785 76 + 22939663 AGCCATGCAGGGAGC--------CCTGGAGGGAGCCACAAGCCAAGCCAGCAAAG-AGGGCAGGGCTGGAGGGGCTGGCGCCTTC i otoGar3.GL873542 I 12 C 0 s canFam3.chr24 47084880 61 + 47698779 gagggagcagggag------gagcaggagcagggagg------agg-gaggggag--ggagcaggaaggagagg---------gc i canFam3.chr24 I 5 I 1802 s dasNov3.JH567899 114955 61 + 555560 GGCCCTG--GGGCACAAGGAGACCCAGGCGGGGGTGG------GCACCAGTGAAA-AGGGGTGGGCTGGA--------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181110084 1750 + 182113224 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=1408858.000000 s hg38.chr20_KI270871v1_alt 25437 201 + 58661 CACCACAAGAGGCGGGGGAGTGGTCTCCACCGAGCCATGGCGGGGT----GGGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGCTT--AGTTTCTCTAGGGGTGGTGGGCAAGGGGGAGGTCAGGCCAGGTTGGACCTCCCCAAGGGTCCCGGTAAGCCCAGG-------------AGCACCCGACTCGGGGCCTGGATGAG-GGGA-AGCGAAGGACGG s panTro5.chr20 65595252 201 + 66533130 CACCGCAAGAGGCGGGGAAGTGGTCTCCACCGAGCCATGGCGGGGT----GGGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTT--AGTTTCTCTAGGGGTGGTGGGCAAGGGGGAGGTCGGGCCAGGTTGGACCTCCCCAAGGGTCCCGGTGAGCCCAGG-------------AGCACCCGACTCGGGGCCTGGGTGAG-GGGA-AGCGAAGGACGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363597 201 + 62195757 CACCGCAAGAGGCGGGGAAGTGGTCTCCACCGAGCCATGGCGGGGT----GGGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTT--AGTTTCTCTAGGGGTGGTGGGCAAGGGGGAGGTCGGGCCAGGTTGGACCTCCCCAAGGGTCCCGGTGAGCCCAGG-------------AGCACCCGACTCGGGGCCTGGGTGAG-GGGA-AGCGAAGGACGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 774841 201 - 1017659 CACCACAAGAGGCGGGGGAGTGGTCTCCACCGAGCCATGGCAGGGT----GGGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTT--AGTTTCTCCAGGGGTGGTGGGCAAGGGGGAGGTCGGGCCAGGTTGGACCTCCCCAGGGGTCCCGGTGAGCCCAGG-------------AGCACCCGACTCGGGGCCTGGGTGAG-GGGA-AGCGAAGGACGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265433 201 - 110113093 CACCACGAGAGTCGAGGGAGTGGTCCCCATCAGGCCATGGCGGGGT----GGGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTT--AGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTTGGGCCAGGTTGGACCTCCCCAGGGGTCCCGGAGAGCCCAGG-------------AGCACCCGACTTAGGGCCTGGGTGAG-GGGA-AGCGAAGGACAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983759 202 - 92844088 CATGATGAGAGGCGGGGGAGTGGTCCCCACCGGGCCATGGCGGGGT-----GGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTCGGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGG-------------AGCCCCCAGCTCAGAGCTTGGGTGAG-GGAA-AGTAAAGGACGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631275 202 + 96509753 CATGATGAGAGGCAGGGGAGTGGTCCCCACCGGGCCATGGCGGGGT-----GGCTGCTCCTGGAGCAGGAAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTCGGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGA-------------AGCCCCCAGCTCAGAGCTTGGGTGAG-GGAA-AGTAAAGGACGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16086838 202 - 16982598 CATGATGAGAGGCGGGGGAGTGGTCCCCACCGGGCCATGGCGGGGT-----GGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTCGGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGG-------------AGCCCCCAGCTCAGAGCTTGGGTGAG-GGAA-AGTAAAGGATGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930177 202 - 3785965 CATGATGAGAGGCGGGGGAGTGGTCCCCACCAGGCCATGGCGGGGT-----GGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTCGGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGG-------------AGCCCCCAGCTCGGAGCCTGGGTGAG-GGAA-AGCAAAGGACGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601636 202 - 90373283 CATGATGAGAGGCAGGGGAGTGGTCCCCACCGGGCCATGGCAGGGT-----GGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTCAGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGG-------------AGCACCCAGCTCGGAGCCTGGGTGAG-GGGA-AGCAAAGGACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478039 202 + 6149316 CACGATGAGAGGCGGGGGAGTGGTCCCCATCGGGCCATGGCGGGGT-----GGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGGCGGTCGGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGG-------------AGCCCCCAGCTCGGAGCCTGGGTGAG-GGAA-AGCAAAGGACGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710730 202 - 5823884 CATGATGAGAGGCGGGGGAGTGGTCCCCACCGGACCATGGCAGGGT-----GACTGCTCCTAGAGCAGGGAC--CCCAGGGGTTGTGTTTAGAGTTTCTCTAGGGGTGGTGGGCAAGGGGACGGTCGGGCCAGGTTGGGCCTCCCCAGGGGTCCCAGAGAGCCCAGG-------------AGCACCCAGCTCGGAGCCTGGGTGAG-GGGA-AGCAAAGGAGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57421250 159 + 159171411 CACGAGGAGAGGCAGGGGAGTGGTCCCCACAGGG--GTGG-AGGAT----GGGCTCCTCCTGGAGCAGGGAC--CCCAGGGGTTTTATTTAGAGTTTCTCTCAGGGTGGTGGGCAAGGGGG---------CAGGTCAGGCCGCCCCA---------------------------------------------GGGGCCTGGGTGAG-GGGA-AGGAGAGAAGGG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 388402 169 + 1231380 CAGGAGGAGAGGCGGGGAAGTGGTCCCCACAGGG--GTGG-GGGGC----GGGCTGCTCCTGGAGCAGGGAC--CCCAGGGGTTTTATTTAGAGTTTCTCTCGGGGTGGTGGGCAAGGGGGCAGTCGAGCCAGGTCAGGCCGCCCCAG--------------------------------------------GGGGCCTGGGTGAG-GGGA-AGGGGAGAAACG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1949471 165 + 11732439 CACGAGGCG-GGCGGGGGAGTGGTCCCCACAGGG--GTGG--GGGT----GGGCTGCTCCTGGAGCAGGGAC--CCCACGGGTTTTATTT--AGTTTATCTTGGGGTGGTGGGCAAGGGGGCAGTCGAGCCAGGTCAGGCCACCCCAG--------------------------------------------GGGGCCTGGGTGAG-GGGA-AGGGGAGAAGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22167861 202 + 22939663 CAGCA-AAGAGCCTGG---------CCCAGGAGGTCTTAG-GAGGTGACAGGCCTGGCCCTGTGGTAGGGGTGACTTAGGAGAGATGGGA-GAGGCCACCACAGGGAGGT--GCAGCAGGGAGGGAGGG-------AGGGCTTCTCTGGTGCCATGGGAAACCTGGGGAAATTTGTATTTAGAATTTTTCTTGAGTGATGGATGAGTGGGG-CCTCAAGGCAGG i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 115016 155 + 555560 CGCC------TGCAGGGCAATGGCCACTGCCCAAGGACGGCAAGAC----GAGGT----CAGTGGGGGGGAG--GCCAGGA-----------AGCCTGTTCCGGTATGG-GGGTGAGGGTACAGCCGTGCAGAGT---------CCACGG---CTGGAGGACACACG----------------------------GCCTGGCCCAG-GGGACAGCGGGGGACGG i dasNov3.JH567899 C 0 I 320 e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=181091.000000 s hg38.chr20_KI270871v1_alt 25638 22 + 58661 ACACGTCTCCAAGCAGCTCCGA s panTro5.chr20 65595453 22 + 66533130 ACACGTCTCCAAGCAGCTCTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363798 22 + 62195757 ACATGTCTCCAAGCAGCTCTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775042 19 - 1017659 ACACGTCTCCAAGCAGCTC--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265634 22 - 110113093 ACACATCTCCAAGCAGCTCCAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983961 22 - 92844088 ACACGTCTCCAAGCAGCTCTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631477 22 + 96509753 ACACGTCTCCAAGCAGCTCTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087040 22 - 16982598 ACACGTCTCCAAGCAGCTCTGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930379 22 - 3785965 ACACGTCTCCAAGCAGCTCTGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601838 22 - 90373283 ACACGTCTCCATGCGGCTCTGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478241 22 + 6149316 ACACGTCTCCAAGCAGCTCTGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710932 22 - 5823884 ACACGTCTCCAAGCAGCTCTGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57421409 22 + 159171411 GCTTGTCTCCAGGCAGCTCCAA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 388571 22 + 1231380 CTGTGTCTCCAGGCAGCTCCGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1949636 22 + 11732439 GTGTGTCTCCAGGCAGCTCCGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168063 21 + 22939663 ATGCGTTTCCAGACAGCTCAG- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e saiBol1.JH378156 15540452 1027 + 16356641 M a score=3187675.000000 s hg38.chr20_KI270871v1_alt 25660 370 + 58661 CAAGAGATGCCTGTGCCGGGGCCGAGGAAGGCAGGGGCAGGCACCCTGCACTCAGTGCTGGACATGTTGGGGCCGCAGCCCA--CCCCCGCCTGCCAGAACCGCACGCACCACAAGCCA-CGGGCTCAGGACAG-----CCGCACGGAGGCCACTCTGGCTAGGACCAGAAGGTGGGCCCAGGACAGGCCCTGTGAGGGCAGAGTCTTAGATAAA-----CAGACGGAGGGATCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCGCAGACAGCAGGG---------------CCGGGAAG---GGGAGACCTCTCACCAGGACCTGCAGCCCCACCTTGGGGAGTTTA-CCCTGGGTTCCGAGGACGCTGCTGTGTGGTCTGAGGACAGGGTGGGCC-AGCTGGGCCGCACCTGCTCCACAC s panTro5.chr20 65595475 370 + 66533130 CAAGAGACACCTGTGCCGGGGCCGAGGAAGGCAGGGGCAGGCACCCTGCACTCAGTGCTGGACATGTTGGGGCCGCAGCCCA--CCCCCGCCTGCCAGAACCCCACGCACCACAAGCCA-GGGGCTCAGGACAG-----CCGCATGGAGGCCACTCTGGCTGGGACCAGAAGGTGGGCCCGGGACAGGCCCTGTGAGGACAGAGTCTTAGATAAA-----CAGACGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCGCAGACAGCAAGG---------------CCGGGAAG---GGGAGACCTCTCACCAGGACCTGCAGCCCCACCTTGGGGAATTTA-CCCTGGGTTCTGAGGACGCTGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCACGCCTGCTCCACAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61363820 370 + 62195757 CAAGAGACACCTGTGCCGGGGCCGAGGAAGGCAGGGGCAGGCACCCTGCACTCAGTGCTGGACATGTTGGGGCCGCAGCCCA--CCCCCGCCTGCCAGAACCCCACGCACCACAAGCCA-GGGGCTCAGGACAG-----CCGCATGGAGGCCACTCTGGCTGGGACCAGAAGGTGGGCCCGGGACAGGCCCTGTGAGGACAGAGTCTTAGATAAA-----CAGACGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCGCAGACAGCAAGG---------------CCGGGAAG---GGGAGACCTCTCACCAGGACCTGCAGCCCCACCTTGGGGAATTTA-CCCTGGGTTCTGAGGACGCTGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCACGCCTGCTCCACAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775061 369 - 1017659 CAAGAGACGCCTGTGCCGGGGCCGAGGAAGGCAGGGGCAGGCACCCTGCACTCAGTGCTGGACATGTTGGGGCCGCAGCCCA--CCCCTGCCTGCCAGAACCTCACGCACCACAAGCCA-GGGGCTCAGGACAG-----CCGCACGGAGGCCACTCTGGCTGGGACCAGAAGGTGGGTCCGGGACAGGCCCCGTGAGGGCAGAGTCTTAGATAAA-----CAGACGGAGGGGTCAAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCGCAGACAGCAGGG---------------CCGGGAAG---GGGAGACCTCTCACCAGGA-CTGCAACCCCACGTTGGGGAGTTTA-CCCTGGGTTCCAAGGACGCTGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCACGCCTGCTCCACAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109265656 367 - 110113093 CAAGAGACGCCTGTGCCGGGGCCGAGGAAGGCAGGGGCAGGCACCCTGCACTCAGTGCTGGCCATGTCGGGGCCGCAGCCCA--CCCCTGCCCGCCAGAACCACACGCACCACAAGCCG-GGGGCTCAGGACAG-----CTGCACGGAGGCCACTCTGGCTGGGACCAGGAGGTGGGCCTGGGACAGGCCCTGGGAGGGC--AGTCTTAGATAAA-----CAGAGGAAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCTCAGACAGCAGAG---------------TGGGGAAG---GGGAGACCTCTCACCAGGACCTGCAGCCCCACCTTGGGGAGTTTA-CCCCGGGCTCTGAGGACGCCGCTGTG-GGTCTGAGGACAGGGTGGGCC-AGCTGGGCCGCATCTGCTCCACAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91983983 370 - 92844088 CAAGAGACGCCCGTGCCGGGGCCGAGGAAGGC-GGGGCAGGTGCCCTGCACTCAGTGGTGGACATGTGGGGGCCGCAGCCCA--CCCCCCCTTGCCAGAACCGCATGCACCACAAGCCAGGGGGCTCAGGACAA-----CCGCACAGAGGCCACTCTGGCTTCGACGAGAAGGTGGGCCCGGGACAGGCCCTGGGAGGGCAGGGTCTTAGACAAA-----CAGAGGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCCCCAGGACCCGCAGCCCCACCCCGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCGCGCCCGCTCCACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631499 370 + 96509753 CAAGAGACGCCCGTGCCGGGGCCGAGGAAGGC-GGGGCAGGTGCCCTGCACTCAGTGCTGGACATGTGGGGGCCGCAGCCCA--CCCCCCCTTGCCAGAACCGCATGCACCACAAGCCAGGGGGCTCAGGACAA-----CCGCACAGAGGCCACTCTGGCTTGGACGAGAAGGTGGGCCCGGGACAGGCCCTGGGAGGGCAGGGTCTTAGACAAA-----CAGAGGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCCCCAGGACCCGCAGCCCCACCCCGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCGCGCCCGCTCCACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087062 370 - 16982598 CAAGAGACGCCCGTGCCGGGGCCGAGGAAGGC-GGGGCAGGTGCCCTGCACTCAGTGCTGGACATGTGGGGGCCGCAGCCCA--CCCCCCCTTGCCAGAACCGCATGCACCACAAGCCAGGGGGCTCAGGACAA-----CCGCACAGAGGCCACTCTGGCTTGGACGAGAAGGTGGGCCCGGGACAGGCCCTGGGAGGGCAGGGTCTTAGACAAA-----CAGAGGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCCCCAGGACCCGCAGCCCCACCCCGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGACCGCGCCCGCTCCACAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930401 370 - 3785965 CAAGAGACGCCCGTGCCGGGGCCAAGGAAGGC-GGGGCAGGTGCCCTGCACTCAGTGCTGGACATGTGGGGGCCGCAGCCCA--CCCCCCCTTGCCAGAACTGCACGCACCACAAGCCAGGGGGCTCAGGACAA-----CCGCACAGAGGCCGCTCTGGCTTGGACGAGAAGGTGGGCCCGGGACAGGCCCTGGGAGGGCAGGGTCTTAGACAAA-----CAGAGGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCCCCAGGACCCGCAGCCCCACCCCGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCGCGCCCGCTCCACAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89601860 369 - 90373283 CAAGAGACACCTGTGCCGGGGTCGAGGAAGGC-GGGGCAGGTGCCCTGCACTCAGTGCTGGACATGTGGGGGCCGCAGCCCACCCCCCCCCTTGCCAGAACCGCATGCCCCACAAGCCAGGGGGCTCAGGACAA-----CCGCACGGAGGCCGCTCT---TTGGACGAGAAGGTGGGCCCGGGACAGGCCCTGGGAGGGCAGGGTCTTAGACAAA-----CAGAGGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCACCAGGACCCGCAGCCCCACCCTGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGCTGTGTGTTCTGAGGACAGGGTGGGCC-GGCTGGGCCGCGCCCGCTCCACAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478263 361 + 6149316 CAAGAGACGCCCGTGCCGGGGCCGAGGAAGGC-GGGGCAGGTGCCCTGCACTCAGTGCTGGACATGTGGGGGCCGCAGCCCA--CCCCCCCTTGCCAGAACCGCACGCACCACAAGCCAGGGGGCTCAGGACAA-----CCGCACAGAGGC---------TTGGACGAGAAGGTGGGCCCGGGACAGGCCCTGGGAGGGCAGGGTCTTAGACAAA-----CAGAGGGAGGGATCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCCCCAGGACCCGCAGCCCCACCCCGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGCTGTGTGGTCTGAGGACAGGGTGGGCC-GGCAGGGCCACGCCCGCTCCACAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4710954 369 - 5823884 CAAGAGACGCCTGTGCCGGGGCCGAGGAAGGT-GGGGCAGGTGCCCTGCATTCAGTACTGTACATGTGGGGGCCGCAGCCCA---CCCCACTTGCCAGAACCGCATGCACCACAAGCCAGGGGGCTCAGGACAA-----CCGCATGGAGGCGGCTCTGGCTTGGCCGAGAAGGTGGGCCCGGGACAGGCCCTGAGAGGGCAGGGTCTTAGATAAA-----CAGAGGGAGGGGTCGAGGCCT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACAGCGGGG---------------CCGGGAAG---GGGAGACCTCTCACCAGGACCCGCAGCCCCACCCTGGGGAGTTTA-CCCCAGGCTCTGAGGACGCCGTGGTGTGGTCTGAGGACAGGGTGGGCC-GGCTGGGCCGTGCCCGCTCCACAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57421431 436 + 159171411 CAAGAGACACC---GTGGGGGCCTAGAAAGTC-GGGGCAGGCACCCTGCACTCAGGGCTAGAC--GTGGGAGCCACAGC-----CACCCTGCCGCCAGAACCACA---------AGCCAGGGGGCTCAGGACAG-----CCACACGGGGAATGCCCTGGCTGGGGCCAGAAGGTGGGCTAGCAACAGGCCCTGGGGGGACAGGGTCTTACATAAA-----CAGACGGAGGGGTCAAGGCAAGAGTGCAGA-CGCAGGGCCAGGGGTCCCACCCCCAGGAGCGGGGAGCAGGGTCTTAGATAAGCAGAGGGACAGGTCGAGGCAGG-----------------------------------------------------AGCGCAGACAGCAGGG------GTCCCACCCCCTGGGAG---GGGAGATCTCTCACCAGGACCTGCAGCCCCAGGA-AGGGAGTCTA-CCCTGGGCTCTGATGATGCCGCTGTGTGGTCTGAGGACAGGGTGGGCA-GG-------GCGCCCACTCCCCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15541482 440 + 16356641 CAAGAGACACC---GTGGGGGCCGAGGAAGTC--GGGCTGGCACCCTGCACTCAGGGCCAGAC--GTGGGGGCCGCAGC-----CACCCCGCCGCCGGAACCACACACACCACCAGCCACGGGGCTCAGGACA------CCATATGGAGGCTGCCCTGGCTGGGACCAGACGGTGGGCCGGGGACAGGCCCTGGGGGAACAGGGTCTTATATAAA-----CAGACGGAGGGGTCGAGGCACAAGCACAGACCGCAGGGCCGGGGGTCCC-------------------------------------------------------GCCCCCAGGAGGGGCGACAGGGTCTTACATAAACAGAGGGGGGGTGGAGGCAGAGGCGCAGACGGCAGGG------GTCCCACCCCCTGGGAG---GGG-GACCTCTCACCAGGACCTGCAGCCCCACGG-AGGGAGTCCG-CCCCGGGCTCT-AGGACGCCGCTGCGTGGTCTGAGGACACGGTGGGCC-GG-------GCGCCTGCTCCCCAC i saiBol1.JH378156 M 1027 C 0 s cebCap1.NW_016107870v1 388593 363 + 1231380 CAAGAGACTCC---GTGGGGGCCGAGGAAGTC-GGGGCAGACACCCTGCACTCAGGACCAGAC--GAGGGGGCCGCAGC-----CACCCCGCCGCCAGAACCGCACGCACCACAAGCCAGGGGGCTCAGGACAG-----CCACATGGAGACTGCCCTGGCTGGGACCAGAAGGTGGGCCGGGGCCAGGCCCTGGGGGGACAGGGTCTTAGATAAg-----cagagggagaggccgaggcat-----------------------------------------------------------------------------------g-----------------------------------------------------ggcgcagaccgcaggg------gTCCCACCCCCTGGGAG---GGGAGACCTCTCACCAGGACCTGCATCCCCACGA-AGGGAATCTA-CCCCGGGCTCT-AGGATGTCGCTACGTGGTCTGAGGACAGGGTGGGCCGGG-------GTGCCCGCTGCCCAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1949658 363 + 11732439 TAAGAGACACC---GTGGGGGCCGAGGAAGTC-AGGGCAGGCACCCTGCACTCAGGGCCAGAC--GTGGGGGCCGCAGC-----CACCCCGCCACCAGAACCGCATGCACCACAAGCC-GGGGGCTCAGGACAG-----CCACATGGAGACTACCCTGGCTGGGACCAGAAGGTGGGCCGGGGACAGGCCCTGGGGGGACAGGGTCTTATATAAA-----CAGAGGGAGAGGTCGAGGCAT-----------------------------------------------------------------------------------G-----------------------------------------------------AGCACAGACGGCAGAG------GTCCCACCCCCTCGGAG---GGGAGACCTCTCACCAGGACCTGCAGCCCCACGA-AGGGAGTCTA-CCCCGGGCTCTGAGGATGCCGCCGCGTGGTCTGAGGACAGGGTGGGCCGGG-------GTGCCCGCTCCCCAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168084 375 + 22939663 --CAAGACTTGAGGTTGGGGGGTGGGCAAGCCAGAAGCAGGCACCCTACACCCAGTCCTGGGCAGGCAGGGACCACACTACA--CTCCTGCCCACCAGAGCAACCTACACCAC-AGTCAGGAGGCTCAGGACAGGCTGCACACATGGAGGTCCCTCCAAATGGGACCAAGAGG----------ACAGGCCCTAGGGAGACAGGGCTTTAGATGGAAGATCAAGACATGGGTGTGGAGGCCT--------GTCCCTAGGTTAGG-------------------------------------------------------------G-----------------------------------------------------AACAC-GACAGCAAGGCCAATGGTCCCCCACCCAGGGGGCACAGGACACCTCTTTGTAGATCCT---------------GGAGTTTATCCCCAGGCTTTGAAGACAC----GTGC------AGAGCAGGGTGGACC-AGCTCAGCCACGCCTGACCCACAC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I a score=1246515.000000 s hg38.chr20_KI270871v1_alt 26030 150 + 58661 CGACAGGAAGCTGTGGCCTGGTGCAAAGCAGCGCCAGCACCTGGGGGCCTTGGCTACCACCACCACGCGG-AGCGCACAGGAGACTCTGGGAAGGAGGCTGCCACACAGAGTGGGCGGGAGGCTGGGCGAGGCCT-GACCAAGAAACCTCTC s panTro5.chr20 65595845 148 + 66533130 CGACAGGAAGCTGTGGCCTGGTGCAAAGCAGCGCCAGCACCTGGGGGCCTTGGCTGCCACCACCAGGCGG-AGCGCACAGGAGACTCTGGGAAGGAGGCTGCCACAC--AGTGGGCGGGAGGCTGGGCGAGGCCT-GACCAAGAAACCTCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364190 148 + 62195757 CGACAGGAAGCTGTGGCCTGGTGCAAAGCAGCGCCAGCACCTGGGGGCCTTGGCTGCCACCACCAGGCGG-AGCGCACAGGAGACTCTGGCAAGGAGGCTGCCACAC--AGTGGGCGGGAGGCTGGGCGAGGCCT-GACCAAGAAACCTCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775430 148 - 1017659 CGACAGGAAGCTGTGGCCTGGTGCAAAGCAGTGCCAGCACCTGGGGGCCTTGGCTGCCACCACCACGCGG-AGGGCACAGGAGGCTCTGGGAAGGAGGCTG-CACACAGAGTGGGCGGGAGGCTGGG-GAGGCCT-GACCAAGAAACCTCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266023 150 - 110113093 TGACAGGAAGCCGCGGCCCGGCACGAAGCAGCACCAGCACCTGGGGGCCTCGGCTGCCACCACCACGCGG-AGCGCACAGGAGGCTCTGGGAAGGAGGCTGCCACACGGAGTGCGCGGGAGGCTGGGTGAGGCCT-GACCGAGAAACCTCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984353 150 - 92844088 TGA-AGGAAGCCGCAGCCTGGCGCGAAGTAGCACCTGCACTTGGGGGCCTCGGCTGCCGCCACCATGCGG-AGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCACATGGAGTGGGCGGGAGGTTGGGCGAGGCCTGGACCCAGAAACCTCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95631869 150 + 96509753 TGA-AGGAAGCCGCAGCCTGGCGCGAAGTAGCACCTGCACTTGGGGGCCTCGGCTGCCGCCACCATGCGG-AGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCACATGGAGTGGGCGGGAGGTTGGGCGAGGCCTGGACCCAGAAACCTCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087432 150 - 16982598 TGA-AGGAAGCCGCGGCCTGGCGCGAAGTAGCACCTGCACTTGGGGGCCTCGGCTGCTGCCACCATGCGG-AGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCACATGGAGTGGGCGGGAGGTTGGGCGAGGCCTGGACCCAGAAACCTCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930771 151 - 3785965 TGA-AGGAAGCCGCGGCCTGGCGCGAAGCAGCACCAGCACTTGGGGGCCTCGGCTGCCGCCACCATGCGGAAGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCACATGGAGTGGGCGGGAGGTTGGGCGAGGCCTGGACCCAGAAACCTCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602229 149 - 90373283 TGA-AGGAAGCTATGCCCTGGCGCGAAACAGCACCAGCACTTGGGGGCCCCGGCTGCCGCCATCATGCGG-AGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCACATGGAGTGGGCGGGAGGTTGGGCGAGGCCTGGA-CCAGAAACCTCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478624 150 + 6149316 TGA-AGGAAGCCGCGGCCTGGCGCGAAGCAGCACCAGCACTTGGGGGCCTCGGCTGCCGCCACCATGCGG-AGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCACATGGAGTGGGCGGGAGGTTGGGCGAGGCCTGGACCCAGAAACCTCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4711323 150 - 5823884 TGA-AGGAAGCCGCAGCCTGGCGCGAAGCAGCACCAGCACTTGGGGGCCTCGGCTGCCGCCACCATGCGG-AGTGCACAGAAGGCTCTGGGAAGGAGGCTGCCCCATGGGGTGGGCGGGAGGCTGGGTGAGGCCTGGACCCAGAAACCTCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57421867 149 + 159171411 AGACAGGAAGCCTCGGCCTGGCACAAAGCAGCAGCAGCACCT-GGGGCCTCAGCCACCACCA-CAAGCAG-CTCACACAGGAGGCTCTGAGCAGGAGGCTGCCACACGGAGCAGGTGGGAGGCTGGGCGAGGCCTGGACCTCGAAACCTCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15541922 145 + 16356641 GGAC-GGAAGCCACGGCCTGGCACAA---AGCGGCGGCACCT-GGGGCCTCGGCCACCACCG-TCCGCAG-CTCTCACAGGAGGCTCTGGGCAGGAGGCTGCCACACGGAGCGGGTGGGAGGCCGGGCGAGGCCTGGACCTCGAAACCTCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 388956 149 + 1231380 GGACAGGAAGCCGCGGCCTGGCACAAAGCAGCGGCAGCACCT-GGGGCCTCGGCCGCCACCG-CACGCAG-CTCGCACGGGAGGCTCTGGGCAGGAGGCTGCCACACGGAGCGGGTGGGAGGCCGGGCGAGGCCTGGACCTCGAAACCTCTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1950021 148 + 11732439 GGAC-AGAAGCCGTGGCCTGGCACAACGCAGCGGCAGCACCC-GGGGCCTCGGCCGCCACCG-CAGGCAG-CTCGCACAGGAGGCTCTGGGCAGGAGGCTGCCACACGGAGCGGGTGGGAGGCTGGGCGAGGCCTGGACCACGAAACCTCTC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=48013.000000 s hg38.chr20_KI270871v1_alt 26180 5 + 58661 CTGGG s panTro5.chr20 65595993 5 + 66533130 CTGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364338 5 + 62195757 CTGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775578 5 - 1017659 CTGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266173 5 - 110113093 CTGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984503 5 - 92844088 CTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632019 5 + 96509753 CTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087582 5 - 16982598 CTGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930922 5 - 3785965 CTGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602378 5 - 90373283 CTGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478774 5 + 6149316 CTGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4711473 5 - 5823884 CTGGG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15542067 5 + 16356641 CTGGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 389105 5 + 1231380 CTGGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1950169 5 + 11732439 CCGGG i aotNan1.NW_018500483v1 C 0 I 82 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C a score=199973.000000 s hg38.chr20_KI270871v1_alt 26185 28 + 58661 GAGACTAAGCCAGGGCCTCAGCCCTCTA s panTro5.chr20 65595998 28 + 66533130 GAGACTAAGCCAGGGCCTCAGCCCTCTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364343 28 + 62195757 GAGACTAAGCCAGGGCCTCAGCCCTCTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775583 28 - 1017659 GAGACTAAGCCAGGGCCTCAGCCCTCTA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266178 28 - 110113093 GAGACTGAGCCAGGGCCTCAGCGCTCTA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984508 28 - 92844088 GAGACCAAGCCAGGACCTCAGCCCTCTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632024 28 + 96509753 GAGACCAAGCCAGGACCTCAGCCCTCTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087587 28 - 16982598 GAGACCAAGCCAGGACCTCAGCTCTCTA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930927 28 - 3785965 GAGACCAAGCCAGGACCTCAGCCCTCTA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602383 28 - 90373283 GAGACCAAGCCAGGACCTCAGCCCTCTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478779 28 + 6149316 GAGACCAAGCCAGGACCTCAGCCCTCTA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4711478 28 - 5823884 GAGACCAAGTCGGGACCTTAGCCCTCTA i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15542072 28 + 16356641 GAGTCCCAGCCGGGCCCTCCGCGCTCTA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 389110 28 + 1231380 GAGTCCCAGCCAGGCCCTCCGCTCTCTA i cebCap1.NW_016107870v1 C 0 I 716 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950174 82 + 11732439 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C a score=146122.000000 s hg38.chr20_KI270871v1_alt 26213 24 + 58661 CACAATTTCGTTACCAAAGGAGGC s panTro5.chr20 65596026 24 + 66533130 CACAATCTCGTTACCAAAGGAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364371 24 + 62195757 CACAATCTCGTTACCAAAGGAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775611 24 - 1017659 CACAATTTCGTTACCAAAGGAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266206 24 - 110113093 TACAATCTCGGTACCAAAGGAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984536 24 - 92844088 CACAATTTCTTTACCAAAGGAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632052 24 + 96509753 CACAATTTCTTTACCAAAGGAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087615 24 - 16982598 CACAATTTCTTTACCAAAAGAGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930955 24 - 3785965 CACAATTTCTTTACCAAAGGAGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602411 24 - 90373283 CACAATTTCTTTACCAAAGGAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478807 24 + 6149316 CACAATTTCTTTACCAAAGGAGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4711506 24 - 5823884 CACGGTTTCTTTACCAAAGGAGGC i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15542100 24 + 16356641 TGCGACTTCTCCACCAAAGCAGGC i saiBol1.JH378156 C 0 I 21 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950174 82 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C a score=301532.000000 s hg38.chr20_KI270871v1_alt 26237 73 + 58661 A---TGGtttt-----ttgtttgtttgt---ttgtttgttttgagacagagtctcgctctgtcccccaggctggagtgcagtgg s panTro5.chr20 65596050 66 + 66533130 G---TG------------ttttgttttt---tttttttttttgagacagagtctcgctctgtcccccaggctggagtgcagtgt i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364395 65 + 62195757 G---TG------------ttttgttt-t---gttttttttttgagacagagtctcgctctgtcccccaggctggagtgcagtgt i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775635 71 - 1017659 G---TGttttt-----ttttttgtttgt---ttgtt--ttttgagacagagtctcgctctgtcccccaggctggagtgcagtgt i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266230 80 - 110113093 G---TGTTTttttttgttttttgttttttg-tttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtgg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984560 80 - 92844088 A----TTTTTtttttttggtttgttttttgtttttttattttgagacagagtctcgctctgtcccccaggctggagtgcagtgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632076 83 + 96509753 A-TTTTTTTTtttttttggtttgttttttgtttttttattttgagacagagtctcgctctgtcccccaggctggagtgcagtgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087639 81 - 16982598 A---TTTTTTtttttttggtttgttttttgtttttttattttgagacagagtctcgctctgtcccccaggctggagtgcagtgg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2930979 83 - 3785965 ATTTTTTTTttttttttggtttgttttttg-ttttttattttgagacagagtctcgctctgtcccccaggctggagtgcagtgg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602435 81 - 90373283 T--TTTTTTTTttttttggtttgttttttg-ttttttattttgagacggaatctcgctctgtcgcccaggctggactgcagtgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478831 78 + 6149316 -----ATttttttttttggtttggtttttg-ttttttattttgagacagagtctcgctctgtcccccaggctggagtgcagtgg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4711530 76 - 5823884 A-------TTTTTGtttggtttgttttttg-ttttttatttggagccagagtctagctctgtcgcccaggctggagtgcagtgg i colAng1.NW_012114444v1 C 0 M 790 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950174 82 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15542124 21 + 16356641 I e calJac3.chr5 57422016 0 + 159171411 C a score=1107989.000000 s hg38.chr20_KI270871v1_alt 26310 255 + 58661 cgtgatcccggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaagcgcccgccacca-cacccggctaattttt---tgtatttttagtagaaac-aggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcagcctcccaaagtgctgggattataggtgtgagccactgtgc-ccagccAGGAGGCATGTTTTTTA s panTro5.chr20 65596116 243 + 66533130 cgtgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccacca-cacccggctgattttt---tgtatttttagtagaaac-aggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtgctgggattataggtgtgagccactgtgc-ccagccA------------TTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364460 243 + 62195757 cgtgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccacca-cacccggctgattttt---tgtatttttagtagaaac-aggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcggcctcccaaagtgctgggattataggtgtgagccactgtgc-ccagccA------------TTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775706 254 - 1017659 cgcgatctcggctcactgcaagctccgcctccctggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacca-cgcctggct-attttt---tgtatttttagtagaaac-aggtttcaccgtgttagccaggatggtctcaatctcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattataggtgtgagccactgtgc-ccagccAGGAGGCATGTTTTTGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266310 254 - 110113093 cgcaatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctccccagtagctgggactacaggcgcccgccacca-cacctggctaattttt---tgtattttcagtagaaac-aggtttcaccatgttacccaggatggtctcgatctcctgacctcgtgatccacccacctcggcctcccaaagtgctgggattacaggc-tgagccaccgcgc-ccaaccAGGAGGCATGTTTTTGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984640 254 - 92844088 cgagatc-cagctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccaactagctgggactacaggtgcccaccaccaccgcctggctaa-tttt---tgtatttt--gtaaagatggggtttcaccgtgttggccaggatggtcttaatctcctgacctcgtgatccgcccgccttgacctcccaaagtgctgggattacaggcgtgagccaccgtgcgccggccAAGAGGCATGTTTTGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632159 256 + 96509753 cgagatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccaactagctgggactacaggtgcccaccacca-cgcctggctaattttt---tgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgccttgacctcccaaagtgctgggattacaggcgtgagccaccgcgc-ccggccAAGAGGCATGTTTTGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087720 256 - 16982598 cgagatctcggctcactacaagctccgcctcccgggttcatgccattctcctgcctcagcctcccaactagctgggactacaggtgcccaccacca-cgcctggctaattttt---tgtatttttagtagagatggggtttcaccgtgttagccaggatggtcttaatctcctgaccgcgtgatccgcccgccttgacctcccaaagtgctgggattacaggcgtgagccaccgcgc-ccggccAAGAGGCATGTTTTGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931062 256 - 3785965 caagatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccaactagctgggactacaggtgccctccacca-cgcctggctaattttt---tgtatttttagtagagatggggtttcaccgtgttagccaggatggtcttaatctcctgacctcgtgatccgcccgccttgacctcccaaagtgctgggattacaggcgtgagccaccgcgc-ccggccAAGAGGCATGTTTTGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602516 258 - 90373283 ccggatctcagctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccacct-tgcccagctagtttttttgtatttttttagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatctgccggcctcggcctcccaaagtgctgggattacaggc-tgagccaccgcgc-ccagccAAGAGGCATGTTTTGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5478909 256 + 6149316 cgcgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgcctcagcctcccaactagctgggactacgggtgccctccacca-cgcctggctaattttt---tgtatttttagtagagatggggtttcaccgtgttagccaggatggtcttaatctcctgacctcgtgatccgcccgccttgacctcccaaagtgctgggattacaggcgtgagccaccgcgc-ccggccAAGAGGCATGTTTTGGA i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950174 82 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15542124 21 + 16356641 I e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M a score=70071.000000 s hg38.chr20_KI270871v1_alt 26565 14 + 58661 A-------------GACTACTGCCATT s panTro5.chr20 65596359 14 + 66533130 A-------------GACTATTGCCATT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364703 14 + 62195757 A-------------GACTATTGCCATT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775960 14 - 1017659 A-------------GACTATTGCCATT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266564 27 - 110113093 AGACATGAAACAGTGACTATTGCCATT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984894 27 - 92844088 AGACATGAAACAGTGACTATTGACATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632415 27 + 96509753 AGACATGAAACAGTGACTATTGACATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16087976 27 - 16982598 AGACATGAAACAGTGACTATTGACATT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931318 27 - 3785965 AGACATGAAACAGTGACTATTGACATT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602774 27 - 90373283 AGACATGAAACAGTGACTATTGACATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5479165 27 + 6149316 AGACATGAAACAGTGACTATTGACATT i manLeu1.NW_012104365v1 C 0 C 0 s saiBol1.JH378156 15542145 14 + 16356641 -------------AGACTCTTACCATC i saiBol1.JH378156 I 21 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950174 82 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M a score=464023.000000 s hg38.chr20_KI270871v1_alt 26579 75 + 58661 CTCAACTTAACCACAGGACAGCAAGGGTTGAGGGGGAAGGCggaaaaccaggagggagaggatggggactgagac s panTro5.chr20 65596373 74 + 66533130 CTCAACTCAACCACA-GACAGCAAGGGTTGAGGGGGAAGGCggaaaaccaggagggagaggatggggactgagac i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364717 74 + 62195757 CTCAACTCAACCACA-GACAGCAAGGGTTGAGGGGGAAGGCggaaaaccaggagggagaggatggggactgagac i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 775974 75 - 1017659 CTCAACTCAACCACAGGACAGCAAGGGTTGAGGGGGAAGGCGGAAAACCAGGAGGGAGAGGATGGGgactgagac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266591 75 - 110113093 CTCAACTCAACCAAATGACAGCAAGGGTTGAGGGGGAAGGCAGAAAACCAGGAGGGAGAGGATGGGgactgcgac i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984921 74 - 92844088 CTCAACTCAACCACATGACAGCAAGGGCTGA-GGGGAAGGCAGAAAACCAagagggagaggatgagggatgagac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632442 75 + 96509753 CTCAACTCAACCACATGACAGCAAGGGCTGAGGGGGAAGGCAGAAAACCAAGAGGGAGAGGATGGGgactgagac i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088003 75 - 16982598 CTCAACTCAACCACATGACAGCAAGGGCTGAGGGGGAAGGCAGAAAACCAagagggagaggatggggactgagac i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931345 75 - 3785965 CTCAACTCAACCACATGACAGCAAGGGCTGAGGGGGAAGGCAGAAAACCAagagggagaggatggggactgagac i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602801 75 - 90373283 CTCAACTCAACCACATGACAGCAAGGGCTAAGTGGGGAGGCCGAAAACCAagagggagaggatggggactaagac i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5479192 75 + 6149316 CTCAACTCAACCACATGACAGCAAGGGCTGAGGGGGAAGGCAGAAAACCAagagggagaggatggggactgagac i manLeu1.NW_012104365v1 C 0 C 0 s saiBol1.JH378156 15542159 75 + 16356641 TTCAACTCAACCACGTGACGGCAAGGGCTGAGGGGGAAGGTGGGAAAGCCTGAGGGAGACGACTGGgacagagac i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1950256 75 + 11732439 CTCAACTCAACCACGTGACAGCAAGGGCTGAGGGGGAGGGCGGGAAAGCGTGAGGGagacgacagggacagagac i aotNan1.NW_018500483v1 I 82 I 18 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M a score=-550.000000 s hg38.chr20_KI270871v1_alt 26654 6 + 58661 agag----------------------at s panTro5.chr20 65596447 18 + 66533130 agag----agacagagagat------ag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364791 18 + 62195757 agag----agacagagagat------ag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776049 4 - 1017659 agag------------------------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266666 28 - 110113093 agagatagagacagagagacagagagat i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91984995 6 - 92844088 ggag----------------------at i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632517 6 + 96509753 ggag----------------------at i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088078 6 - 16982598 ggag----------------------at i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931420 6 - 3785965 ggag----------------------at i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602876 6 - 90373283 agag----------------------at i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5479267 6 + 6149316 ggag----------------------at i manLeu1.NW_012104365v1 C 0 C 0 s saiBol1.JH378156 15542234 6 + 16356641 agag----------------------ac i saiBol1.JH378156 C 0 I 1091 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M a score=30843.000000 s hg38.chr20_KI270871v1_alt 26660 11 + 58661 agagacagaga s panTro5.chr20 65596465 11 + 66533130 agagacagaga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364809 11 + 62195757 agagacagaga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776053 7 - 1017659 ----atagaga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266694 11 - 110113093 agagacagaga i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91985001 11 - 92844088 agagacagaga i rheMac8.chr10 C 0 I 38 s macFas5.chr10 95632523 5 + 96509753 agaga------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088084 5 - 16982598 agaga------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931426 11 - 3785965 acagagataga i cerAty1.NW_012001373v1 C 0 I 2 s chlSab2.chr2 89602882 11 - 90373283 acagacagaga i chlSab2.chr2 C 0 I 8 s manLeu1.NW_012104365v1 5479273 11 + 6149316 agagacagaga i manLeu1.NW_012104365v1 C 0 I 8 s saiBol1.JH378156 15543331 11 + 16356641 agagacagaga i saiBol1.JH378156 I 1091 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M a score=42106.000000 s hg38.chr20_KI270871v1_alt 26671 13 + 58661 cagagagatagag s panTro5.chr20 65596476 13 + 66533130 cagagagatagag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364820 9 + 62195757 cagagagat---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776060 13 - 1017659 cagagagatagag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266705 11 - 110113093 cagagagat--ag i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95632528 13 + 96509753 cagagagatggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088089 13 - 16982598 cagagagatggag i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931439 13 - 3785965 cagagagacagag i cerAty1.NW_012001373v1 I 2 I 12 s chlSab2.chr2 89602901 11 - 90373283 c--agagacagag i chlSab2.chr2 I 8 C 0 s manLeu1.NW_012104365v1 5479292 13 + 6149316 cagagagatagag i manLeu1.NW_012104365v1 I 8 C 0 s saiBol1.JH378156 15543342 13 + 16356641 cagagagacagag i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e rheMac8.chr10 91985012 38 - 92844088 I a score=64877.000000 s hg38.chr20_KI270871v1_alt 26684 22 + 58661 agacagagacagagagatagag s panTro5.chr20 65596489 22 + 66533130 agacagagacagagagatggag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364829 22 + 62195757 agacagagacagagagatggag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776073 22 - 1017659 agacagaggcagagagatggag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266716 22 - 110113093 agacagagacagagagacagag i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95632541 18 + 96509753 acagagagatagagagat---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088102 22 - 16982598 acagagagatagagagatagag i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89602912 22 - 90373283 agatggagacagagagatagag i chlSab2.chr2 C 0 I 2 s manLeu1.NW_012104365v1 5479305 22 + 6149316 agatagaggcagagagacagag i manLeu1.NW_012104365v1 C 0 I 16 s saiBol1.JH378156 15543355 22 + 16356641 acagagaggcagagagacagag i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e rheMac8.chr10 91985012 38 - 92844088 I a score=28398.000000 s hg38.chr20_KI270871v1_alt 26706 30 + 58661 atagagagacagagacaaaggcagagatag---------------- s panTro5.chr20 65596511 22 + 66533130 at--------agagacaaaggcagagatag---------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364851 22 + 62195757 at--------agagacaaaggcagagatag---------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776095 26 - 1017659 at----agacagagacaaaggcagagatag---------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266738 24 - 110113093 ac----ag--agagacagaagcagagatag---------------- i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95632559 14 + 96509753 ----------------agaggcagacatag---------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088124 24 - 16982598 ------gcagagagacagaggcagacatag---------------- i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89602936 30 - 90373283 atagaggcagagagacagaggcagacatag---------------- i chlSab2.chr2 I 2 C 0 s saiBol1.JH378156 15543377 42 + 16356641 ----acagagagagacagagacacacagagagactgacagagacag i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e rheMac8.chr10 91985012 38 - 92844088 I a score=8127.000000 s hg38.chr20_KI270871v1_alt 26736 6 + 58661 agacag s panTro5.chr20 65596533 6 + 66533130 agacag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364873 6 + 62195757 agacag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776121 6 - 1017659 agacag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266762 4 - 110113093 agac-- i nomLeu3.chr13 C 0 C 0 s chlSab2.chr2 89602966 6 - 90373283 agacag i chlSab2.chr2 C 0 C 0 s saiBol1.JH378156 15543419 6 + 16356641 agacag i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=54349.000000 s hg38.chr20_KI270871v1_alt 26742 73 + 58661 agagataaagagacagagagatagaaaaacagagacagatagagacagagagagagacagagagacagagaca s panTro5.chr20 65596539 61 + 66533130 agagataaagagacagagagatagaaaa------acagacagagac--agatagagacagag----agagaca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364879 60 + 62195757 agagataaagagacagagagatagaaa-------acagacagagac--agatagagacagag----agagaca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776127 58 - 1017659 agagataaagagacagagagatagaaa-------acagacagagac--agatagagacag------agagaca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109266766 59 - 110113093 agagataaagagacagagagatagagaa------acagaa--------agatagagacagaaagacagagaca i nomLeu3.chr13 C 0 M 2024 s saiBol1.JH378156 15543425 71 + 16356641 --agagagagagacagagagagacagagacagaaagagacagagacagagagagagacagagagacagagaca i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=13313.000000 s hg38.chr20_KI270871v1_alt 26815 31 + 58661 --------gagagatggagacagagatagaaat----------acagag s panTro5.chr20 65596600 35 + 66533130 --------gagagatggagacagagatagaaat------aaagacagag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364939 35 + 62195757 --------gagagatggagacagagagatagaa------taagacagag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776185 23 - 1017659 --------gagagatagaaataaag------------------acagag i gorGor5.CYUI01015750v1 C 0 C 0 s saiBol1.JH378156 15543496 49 + 16356641 gagagacagagagacagagacagagacagagagagtcagagagacagag i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e calJac3.chr5 57422016 0 + 159171411 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=78124.000000 s hg38.chr20_KI270871v1_alt 26846 124 + 58661 actgagagacaaaaacagagcaatagagagaaatagagacagagatagagacagaaaaatagatactgagagag--------agagacagagatag--------------------------agagatagagatagagagaaatagatacagagatag------ s panTro5.chr20 65596635 114 + 66533130 actgagagacaaaaacagagcgatagagagaaatagagacagagatagagacagaaagatagatactgagagag------acagacacagagatag--------------------------acagagagagacagag------agatac------ac------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61364974 114 + 62195757 actgagagac--aaacagagtgatagagag-aatagagacagagatagagacag-aagatagatactgagagag------acagacacagagatag--------------------------agagacagagagagac------agagag--atacac------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776208 120 - 1017659 actgagagacaaaaacagagcgatagagagaaatagagacagagatagagacagaaaggtagatactgagagag------acagacacagagatag--------------------------agagacacagagagac------agagacagagatac------ i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57422016 108 + 159171411 ACagagagacagagatggag--acagagagagacagagac--------agagagagagacagagacaaacagaa--------agagacagagacag--------------------------agagacagagacagag------agatacacagagag------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15543545 154 + 16356641 tcagagagacagagacagag--acagagagagacagagac--agacagagacagagagacagagacacacagagagactgacagagacagagacagagagaggtagagagaggcagagagacagagacagagacagag------agagagacagagagattaac i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950331 18 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=75761.000000 s hg38.chr20_KI270871v1_alt 26970 99 + 58661 agagacagag-----------------agagacagagacagag----------------agatacacagggacagagacagagacagagagatacacagagacagagagagacaga--gacagagacagagaaa s panTro5.chr20 65596749 75 + 66533130 agggacagaa-----------------agagacagagacagag----------------agatacacagagacagag--agagac----------------------agagacaga--gatagagacagagaaa i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365088 74 + 62195757 agggacaga------------------agagacagagacagag----------------agatacacagagacagag--agagac----------------------agagacaga--gatagagacagagaaa i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776328 69 - 1017659 ----acaggg-----------------acagaaagagacagag----------------agatacacagagacagag--agagac------------------------aaaaaga--gatagagacagagaaa i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57422124 85 + 159171411 ---------------------------agagatagagacagag--agacaa------acagagacagagagacagag--acagac------------agaaagagagagacacagaaggacagagacagagaga i calJac3.chr5 C 0 I 10 s saiBol1.JH378156 15543699 118 + 16356641 agagacagagagagaaagacacaagacagagacagagacagag--agacaaagacagagagaggcagagagacagag--acagac------------agacagagacagagacagaaagacagaggcagagaca i saiBol1.JH378156 C 0 I 8 s aotNan1.NW_018500483v1 1950349 101 + 11732439 agagacagag-----------------agagacagagacagagataaacagagacagagagagagacagagacagag----agac------------agatagagacagggacagagagacagagacagagaaa i aotNan1.NW_018500483v1 I 18 I 53 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=25964.000000 s hg38.chr20_KI270871v1_alt 27069 47 + 58661 gagacagagacagat--------------atgcaaagagatagagaaac--agaaacagagat s panTro5.chr20 65596824 45 + 66533130 gagacagagacagat--------------atgcaaagagatagagaaac----aaacagagat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365162 40 + 62195757 gagacagagacagat--------------atgcaaagagataga---------gaacagagat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776397 47 - 1017659 gagacagagacagat--------------atgcaaagagatagagaaac--agaaacagagat i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57422219 39 + 159171411 gag----agacagag--------------agacagagacagagag------atatgcaaagac i calJac3.chr5 I 10 C 0 s saiBol1.JH378156 15543825 63 + 16356641 gagtcaaagacagagatacaaacagaaccagataaagacagatagggacaaatacacagagat i saiBol1.JH378156 I 8 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1950450 53 + 11732439 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=1960.000000 s hg38.chr20_KI270871v1_alt 27116 2 + 58661 aa s panTro5.chr20 65596869 2 + 66533130 ag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365202 2 + 62195757 ag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776444 2 - 1017659 aa i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57422258 2 + 159171411 ag i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15543888 2 + 16356641 gg i saiBol1.JH378156 C 0 I 2 s aotNan1.NW_018500483v1 1950503 2 + 11732439 ag i aotNan1.NW_018500483v1 I 53 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e cebCap1.NW_016107870v1 389138 716 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=46600.000000 s hg38.chr20_KI270871v1_alt 27118 36 + 58661 agacagag------------acagagagatacacagagacagagagat s panTro5.chr20 65596871 42 + 66533130 agacagag------agatacacagagacagagagagagacagagagat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365204 42 + 62195757 agacagag------agatacacagagacagagagagagacagagagat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776446 44 - 1017659 agacagagacagagagatacacagagacag----agagacagagagat i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57422262 32 + 159171411 acacaaac------------agaaccagat----aaagacaaagagat i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15543892 32 + 16356641 agacagag------------acagagaAAT----AGAGATAGGGAGAT i saiBol1.JH378156 I 2 C 0 s cebCap1.NW_016107870v1 389854 32 + 1231380 agacagag------------acagagaaat----agagacagacagat i cebCap1.NW_016107870v1 I 716 C 0 s aotNan1.NW_018500483v1 1950505 32 + 11732439 agacagag------------acagagacat----agagacagagagat i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5479327 16 + 6149316 I e colAng1.NW_012114444v1 4711606 790 - 5823884 M e chlSab2.chr2 89602972 0 - 90373283 C e cerAty1.NW_012001373v1 2931452 12 - 3785965 I e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=10505.000000 s hg38.chr20_KI270871v1_alt 27154 2 + 58661 ac s panTro5.chr20 65596913 2 + 66533130 ac i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365246 2 + 62195757 ac i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776490 2 - 1017659 ac i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2931464 2 - 3785965 ac i cerAty1.NW_012001373v1 I 12 C 0 s chlSab2.chr2 89602972 2 - 90373283 ac i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5479343 2 + 6149316 ac i manLeu1.NW_012104365v1 I 16 C 0 s calJac3.chr5 57422294 2 + 159171411 ac i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15543924 2 + 16356641 AC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 389886 2 + 1231380 ac i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1950537 2 + 11732439 ac i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M e macNem1.NW_012014244v1 16088148 0 - 16982598 C e macFas5.chr10 95632573 0 + 96509753 C e rheMac8.chr10 91985012 38 - 92844088 I a score=2278545.000000 s hg38.chr20_KI270871v1_alt 27156 327 + 58661 agacagagagaTATGgacctggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggctggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagctactcaggaggctggggcaggagaatcacttgagcccgggaggttgagtctgcagtgagctttgactgcaccattgcactccagcctggatgatagagcaagatcctgcct-------------------------------c------------aaaaaaaaaagaaaagagagagagaga--gac s panTro5.chr20 65596915 312 + 66533130 agacagagagatatggacctggcacagtggctcatgcctgtaatcccagcactttgggaggccaaggctggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagctactcaggaggctggggcaggagaatcacttgagcccgggaggttgagtctgcagtgagctttgactgcaccatcgcactccagcctggatgatagagcaagatcctgcct-------------------------------c------------aaaaaaaa---aaaagag-------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365248 312 + 62195757 agacagagagatatggacctggcacagtggctcatgcctgtaatcccagcactttgggaggccaaggctggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagctactcaggaggctggggcaggagaatcacttgagcccgggaggttgagtctgcagtgagctttgactgcaccatcgcactccagcctggatgatagagcaagatcctgcct-------------------------------c------------aaaaaaaa---aaaagag-------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776492 327 - 1017659 agacagagagatatggacctggcacggtggctcatgcctgtaatcccagcactttgggaggccaaggctggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctact-aaaatacaaaaattagccaggtgtggtggtgcatgcctgtaatcccagctactcaggaggctggggcaggaggatcacttgagcccgggaggttgagtc-gcagtgagctttgactgcaccactgcactccagcctggatgatagagcaagatcctgcct-------------------------------c------------aaaaaaaaaaaaaaagagagagagagagtgac i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91985050 326 - 92844088 agacagagaggtatgggcctggcacggtggctcacacctgtaatcccagcactttgggaggccaaggccggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcacacctgtaatcccagccactcaggagggtgaggcaggagaatcacttgagcccaggaggttgagtctgcagtgagctttgactgcaccactgcactccagcctggatgatagaggaagatcctgcct-------------------------------c---------aaaaaaaaaaaaaaaagagagagagagag------ i rheMac8.chr10 I 38 C 0 s macFas5.chr10 95632573 325 + 96509753 agacagagagGTATGggcctggcacggtggctcacacctgtaatcccagcactttgggaggccaaggccggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcacacctgtaatcccagccactc-ggagggtgaggcaggagaatcacttgagcccgggaggttgagtctgcagtgagctttgactgcaccactgcactccagcctggatgatagaggaagatcctgcct-------------------------------c---------aaaaaaaaaaaaaaaaaagagagagagag------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088148 325 - 16982598 agacagagagatatgggcctggcacggtggctcacacctgtaatcccagcactttgggaggccaaggccagtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcacacctgtaatcccagccactcaggagggtgaggcaggagaatcacttaagcctgggaggttgagtctgcagtgagctttgactgcaccactgcactccagcctggatgatagaggaagatcctgcct-------------------------------c---------aaaaaaaaaaaaaaaaaa-agagagagag------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931466 357 - 3785965 agacagagagatatgggcctggcacggtggctcacacctgtaatcccagcactttgggaggccaaggccggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatataaaaattagccaggtgtggtggtgcacacctgtaatcccagctactcaggagggtgaggcaggagaatcacttgagcccgggaggttgagtctgcagtgagctttgactgcaccactgcactccagcctggaagatagagcaagatcctgcctaaaaaaaaaaaaaaaacaaaaaaaagaaaaca---------aaaaaaaaaaaaaaaagagagagagagag------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89602974 323 - 90373283 agacagacagaTGTGggccgggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggccggtggattgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaactacaaaaattagccaggtgtggtggtgcacacctgtaatcccagctactcaggagggtgaggcagaagaatcacttgagcccgagaggttgagtctgcagtgagctttgactgcaccactgcactccagcttggatgatagagcaagatcctgcct-------------------------------c------------aaaaaaagagagagagagagagagag------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5479345 335 + 6149316 agacagagagatatgggcctggcacggtggctcacacctgttatcccagcactttgggaggccaaggccggtggatcgcttgagcccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtggtgcacacctgtaatcccagctactcaggagggtgaggcaggagaatcacttgagcccgggaggttgagtctgcagtgagctttgactgcaccactgcactccagcctggatgatagaggaagatcctgcct-------------------------------caaaaaaaaaaaaaaaaaaaaaaagagagagagagagag------ i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57422296 310 + 159171411 agacagaCAGATATGggcctggcacagtggctcacacctgtaatcccagcactttgggagaccgaggtggctggatcacttaagcccaggagtttgagaccagcctggccaacatggtgaaaccctgtctcaactaaaaatacaaaaattagccaggtgtggtggcgcacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgggcctaggaggtcgaggctgcagtgagctatgactgcgccactgcactccagcctggacaacagagcaaaatcttgtct-------------------------------c------------aaaaaaa-------aaagag------------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15543926 317 + 16356641 AGACAGAGAGATACGggccgggcacggtggctcacacctgtaatcccagcgctctgggaggccaaggtggctagatcacttaagcccaggagttcgagaccagcctggccaacatggtgaaaccccgtctcaactaaaaatacaaaaattagccaggtgtggtggtggacacctgtagtcccagctactcaggaggctgaggcaggagaatcacttgggcccaggaggtcgaggctgcagtgagctgtgactgcaccactgcactcctgcctgggcgacagagcaagatcctgtct-------------------------------c------------aaaaaaagagagagagacag------------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 389888 309 + 1231380 agacagagacatatgggccgggcaccatggctcacgcctgtaat-ccagcgctttgggaggccgaggtggctggatcacttaagcccaggagttcgagaccagcctggccaacatggtgaaaccccgtttcaaccaaaaatacaaaaattagccaggtgtggtggcggacgcctgtagtcccagctactcaggaggctgaggcaggagaatcgcttgggcccaggaggtcgaggctgcagtgagctatgactgcgccactgcactccagcctgggcgacagagcaagatcctgtct-------------------------------c------------aaaaaaa-------aaaaaa------------ i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1950539 316 + 11732439 agacagagagatatgggctgggcacagtggctcacacctgtaatcccagcactttgggaggccaaggtggctggatcacttaagcccaggagttcgagaccagcctggccaacatgctgaaaccctgtctcaactaaaaatacaaaaattagctgagtgtggtggcagacgtctgtagtcccagctactcaggagactgaggcaggagaatcacttgggccccggaggtggaggctgcagtgagctatgactgcgccaccgcactccagcctgggcgacagagcaagatcttgtct-------------------------------c------------aaaaaaa-aaaaagagacac------------ i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e colAng1.NW_012114444v1 4711606 790 - 5823884 M a score=2671799.000000 s hg38.chr20_KI270871v1_alt 27483 350 + 58661 agagagacagagatggcagagagacGGGCGGGGAAGTGAGACATGGACCCTGGCCAGAATGTTGTAGGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCTCGGAGCAGCTTCTGAGCCCGGGTCCCACTGAGGGCCAAGTCTGTGGAAGGGGGCCAGGCCC-TGCACCCCTCCCCAGGGGGGTCAGATGGA--TGGGACACTTTCACACACAGCTCTCCAAAAATTTCTGCCCCTGAAATGTTCTCAGCTAGACATCCGAACTGCTCCTTCAAAGTGGAGGCCAACTCAAGGAAAAGGAAGCCGGAGGCCTGGCAGATGGGGCCTGGCCTGCGGGGGAGGTGAGGGCGGGGTT s panTro5.chr20 65597227 350 + 66533130 agagagaCAGAGATGGCAGAGAGACGGGCGGGGCAGTGAGACATGGACCCTGGCCAGAATGTTGTAAGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCGGAGCAGCTTCTGAGCCCGGGTCCCACTGAGGGCCAAGTCTGTGGAAGGGGGCCAGGCCC-TGCACCCCTCCCCAGGGGGGTCAGATGGA--TGGGACACTTTCACACACAGCTCTCCAAAAATTTCTGCCCCTGAAATGTTCTCAGCTAGCCATCCAACCTGCTCCTTCAAAGTGGAGGCCAACTCAAGGAAAAGGAAGCCGGAGGCCTGGCAGATGGGGCCTGGCCTGCGGGGGAGGTGAGGGCGGGGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365560 350 + 62195757 agagagacagagatggcagagagaCGGGCGGGGCAGTGAGACATGGACCCTGGCCAGAATGTTGTAAGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCGGAGCAGCTTCTGAGCCCGGGTCCCACTGAGGGCCAAGTCTGTGGAAGGGGGCCAGGCCC-TGCACCCCTCCCCAGGGGGGTCAGATGGA--TGGGACACTTTCACACACAGCTCTCCAAAAATTTCTGCCCCTGAAATGTTCTCAGCTAGCCATCCGACCTGCTCCTTCAAAGTGGAGGCCAACTCAAGGAAAAGGAAGCCGGAGGCCTAGCAGATGGGGCCTGGCCTGCGGGGTAGGTGAGGGCGGGGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 776819 349 - 1017659 agagagacagagaTGGCAAAGAGACGGGCGGGGCAGTGAGACATGGACCCTGGCCAGAATGTTGTAGGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCGGAGCAGCTTCTGAGCCCGGGTCCCACTGAGGGCCAAGTCTGTGGAAGGGGGCCAGGCCC-TGCACCCCTCCCCAGGGGCGTCAGATGGA--TGGGACACTTTCACACACAGCTCTCCAAAAATTTCTGCCCCTGAAATGTTCTCAGCTAGCCATCCGACCTGCTCCTTCAAAGTGGAGGCCAACTCAAGGAAAAGGAAGCCGGAGGCCTGGCAGATGGGGCCTGGCCTGCGGGGGAGGTGAGGGCAGGG-T i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91985376 340 - 92844088 --------agagatggcagagagaTGGGCGGGGCAGCGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCAGAGCAGCTTCCAAGCCCGGGTCCCACTGAGAGCCAGGTCTGTGAAAGGGGGCCAGGCCC-TCCA-CCCTCCCCAGGGGGGTCACATGGA--TGGGACACTGTCACACACAGCTCTCCGAAAATTTCTGCCCCTGAAATGTTCCCAGCT-GCCATCCGACCTGCTCCTTCAAAGTAGGCGCCAACTCAAGGGAAAGGAAGCTGGAGACCTGGCAGATGGGCCCTGGCCTGCCGGGGAGGTGAGGGCGGGATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95632898 340 + 96509753 --------aGAGATGGCAGAGAGATGGGCGGGGCAGCGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCAGAGCAGCTTCCAAGCCCGGGTCCCACTGAGGGCCAGGTCTGTGAAAGGGGGCCAGGCCC-TCCA-CCCTCCCCAGGGGGGTCACATGGA--TGGGACACTGTCACACACAGCTCTCCGAAAATTTCTGCCCCTGAAATGTTCCCAGCT-GCCATCCGACCTGCTCCTTCAAAGTAGGCGCCAACTCAAGGGAAAGGAAGCTGGAGACCTGGCAGATGGGCACTGGCCTGCCGGGGAGGTGAGGGCGGGATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088473 340 - 16982598 --------agagatgacagagagaTGGGCGGGGCAGCGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCAGAGCAGCTTCCAAGCCCGGGTCCCACTGAGGGCCAGGTCTGTGAAAGGGGGCCAGGCCC-TCCA-CCCTCCCCAGGGGGGTCACATGGA--TGGGACACTGTCACACACAGCTCTCCGAAAATTTCTGCCCCTGAAATGTTCCCAGCT-GCCATCCGACCTGCTCCTTCAAAGTAGGCGCCAACTCAAGGGAAAGGAAGCTGGAGGCCTGGCAGATGGGCCCTGGCCTGCCGGGGAGGTGAGGGCGGGATT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2931823 340 - 3785965 --------agagatggcagagagaTGGGCGGGGCAGCGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCGAAAGAAGGCAGAGAATCCCAGAGCAGCTTCCAAGCCTGGGTCCCACTGAGGGCCAGGTCTGTGAAAGGGGGCCAGGCCC-TCCA-CCCTCCCCAGGGGGGTCACATGGA--TGGGACACTGTCACACACAGCTCTCTGAAAATTTCTGCCCCTGAAATGTTCCCAGCT-GCCATCCGACCTGCTCCTTCAAAGTAGGCGCCAACTCAAGGGAAAGGAAGCTGGAGGCCTGGCAGATGGGGCCTGGCCTGCCGGGGAGGTGAGGGCGGGATT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89603297 340 - 90373283 --------agagaTGGCAGAGAGATGGGCGGGGCAGCGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCAAAAGAAGCCAGAGAATCCCAGAGCAGCTTCCAAGCCCGGGTCCCCCTGAGGGCCAAGTCTGTAAAAGGGGGCCAGGCCC-TCCA-CCCTCCCCAGGGAGGTCACATGGA--TGGGACACTGTCACACACAGCTCTCCGAAAATTTCTGCCCCTGAAATGTTCCCAGCT-GCCATCCAACCTGCTCCTTCAAAGTAGGCGCCAACTCAAGGGAAAGGAAGCTGGAGGCCTGGCAGATGGGGCCTGGCCTGCGGGGGAGGTGAGGGCGGGATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5479680 340 + 6149316 --------agagatggcagagagaTGGGCGGGGCAGCGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCGAAAGAAGCCAGAGAATCCCAGAGCAGCTTCCAAGCCCGGGTCCCACTGAGGGCCAGGTCTGTGAAAGGGGGCCAGGCCC-TCCA-CCCTCGCCAGGGGGGTCACATGGA--TGGGACACTGTCACACACAGCTCTCCGAAAATTTCTGCCCCTGAAATGTTCCCAGCT-GCCATCCGACCTGCTCCTTCAAAGTAGGCGCCAACTCAAGGGAAAGAAAGCTGGAGGCCTGGCAGATGGGGCCTGGCCTGCCGGGGAGGTGAGGGCGGGATT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4712420 346 - 5823884 agagagacagagatggcagagagaCGGGCGGGGCAGTGAGACATGGACCCTAGCTAGAATGTTGTGGGGGACAGGGGAGTCGAAAGAGGCCAGAGAATCCCAGAGCAGCTTCCAAGCCCGGGTCCCACCGAGGGCCAAGTCTGTGAAAGGGGGCCAAGCCC-TCCA-CCCCACCCAGGGGGG-CAGATGGA--TGGGACACTTCCACACACAGCTCTCCAAAAATCTTTG-CCCTGAAACGTTCCCAGCT-GCCATCCGACCTGCTCCTTCAAAGTAGACGCCAACTCAAGGGAAAGGAAGCTGGAGGCCTGGCAGATGGGGCCTGGCCTGCGGGGGAGGTGAGGGCGGGATT i colAng1.NW_012114444v1 M 790 C 0 s calJac3.chr5 57422606 347 + 159171411 agaaagaCACAGACAGCAGAGAGACGGGTGGGGCAATGAGACATGGACCCTGGCCAGAATGCTG-GGAGAACAGGTGAGTCAAAAGAAGCCAGAGAATCCCAGAGCAGTTTCCGAGCCCGGGGCCCACCGAGGGCCAAGTCTGTGGAA-GGGGCCAGGCCC-TCCA-CCCCTCCCCGGGGGGGGGGGGGGGGTTCAGACACTTTCACACACAGCTCTTCAAAACTTTCTGCCCCTGAAATTTTCTCAGCTGGCCAT-TGACCTGCTCCTCTGAAATGGG-GGCAACTTCAGGAAAAGGAAGCTGGAGGCCTGGTGGACAGGGCCTGGACTTTGGGGGAAGCAAGGGTGGGATT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15544243 325 + 16356641 agagagaCGCAGATGGCAGAGGGACGGGCAGGGCAATAAGGCATGGACTCTGGCCAGAATGCTG-GGGGCACAGGTGAGTCAAAAGAAGCCAGAGAACCCCAGAGCAGTTTCCAAGCCCGGGACCCACTGAGGGCCAAGTCTGTGGAA-GGGGCCAGGCCC--CCA-CCCCTCCCCAGGGGGTCAGACGGA--TGGCACACTTTCACGCACAGCTCTCCAAAACTTTCTGCCTCCGAAATTTTCTCAGCTGGCCAT-CCACCTGCTCCTCCGAAATGGG-GGCAACTTCAGGAAAAGGAAGCTGGAGGC-------------------CTTCGGGGGAGGCAAGGGTGGGATT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 390197 346 + 1231380 agagagacacagaccaccgagagacagGCGAGGCCATGAGACACGGACCCTGGCCAGAATGCTG-GGGGCACAGGTGAGTCAAAAGAAGCCAGAGAACCCCAGAGCAGTTTCTGAGCCCCGGGCCCACCGAGGGCCAAGGCTGTGGAA-GGGGCCAGGCTCCTCCT-CGCTCCCCAGGGGGGTCAGACGGA--TGGGACACTTTCACACACAGCTCTCCAAAACTTTCTGCCCCTAAAATTTCATCAGCTGGCCAT-CGACCTGCTCCTCCGAAATGGG-GCCAACATCAGGAAAAGGAAGCTGGGGGCCTGGCGGACGGGGCCTGGCCTTCGGGGGAGGCAAGGTTGGGATT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1950855 346 + 11732439 agagagacgcagacggcagagaGACGGGCGGGGCAAGGAGACGTGGACCCTGGCCAGAATGCTG-CGGGGACAGGTGAGTTAAAAGAAGCCAGAGAATCCCGGAGCACTTTCCGAGCCTGGGGCCCACCGAGGGCCAAGTCCGTGGAA-GGGGCCAGGCCCCCCAA-CCCTCCCCAGGGGGGTCAGACGGA--TGGGACATTTTCACACACAGCTCTCCAAAACTTTCTGCCCCTGAAATTTTCTCAGCTGGCCAT-CGCCCTGCTCCTCTGAAATGGG-GGCAACTTCAGGAGAAGGAAGCTGGAGGCCTGGCAGATGGGGCCCGGCCCTCGGGGGAGGTCAGGGTGGGACT i aotNan1.NW_018500483v1 C 0 I 17 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=106205.000000 s hg38.chr20_KI270871v1_alt 27833 20 + 58661 CCCCCCACACTGCTGAAAA--C s panTro5.chr20 65597577 20 + 66533130 CCCCCCACACTGCTGAGAA--C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365910 20 + 62195757 CCCCCCACACTGCTGAGAA--C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777168 20 - 1017659 CCCCCCACACTGCTGAGAA--C i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91985716 20 - 92844088 CCCCCCACACTGGTGAGGA--C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633238 20 + 96509753 CCCCCCACACTGGTGAGGA--C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088813 20 - 16982598 CCCCCCACACTGGTGAGGA--C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932163 20 - 3785965 CCCCCCACACTGGTGAGGA--C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89603637 20 - 90373283 CCCCCCACACTGGAGAGGA--C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480020 20 + 6149316 CCCCCCACACTGGTGAGGA--C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4712766 20 - 5823884 CCCCCCACACTGGTGAGGA--C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57422953 19 + 159171411 CCCTCCATATTGGGGGGCC--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15544568 21 + 16356641 CCCTCCATACCGGGGGGGAGG- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 390543 19 + 1231380 CCCTCCATACTGGGGGGGG--- i cebCap1.NW_016107870v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1951201 17 + 11732439 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=1408462.000000 s hg38.chr20_KI270871v1_alt 27853 192 + 58661 CCCCAAAGGCTGCAAGAAAGGGAAACTGGGGGTAGATCTCAT-----CCCAGTAGGAGGTACACAGTCAGCGCGTTTGAATCAGGAAATACCAGCATCCCTATTTGCTATTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCATCCG------CTGCAGAGGGACCCAGAGGGGAGGGCACCGCGGCC s panTro5.chr20 65597597 192 + 66533130 CCCCAAAGGCTGCAAGAAAGGGAAACTGGGGGTAGATCTCAT-----CCCAGTAGGAGGTACACAGTCAGCGTGTTTGAATCAGGAAATACCAGCATCCCTATTTACTATTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCATCCG------CTGCAGAGGGACCCAGAGGGGAGGGCACCGCGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61365930 188 + 62195757 CCCCAAAGGCTGCAAGAAAGGGAAACTGGGGGTAGATCTCAT-----CCCAGTAGGAGGTACA----CAGCGTGTTTGAATCAGGAAATACCAGCATCCCTATTTACTATTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCATCCG------CTGCAGAGGGACCCAGAGGGGAGGGCACCGCGGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777188 192 - 1017659 CCCCAAAGGCTGCAAGAAAGGGAAACTGGGGGTAGATCTCAT-----CCCAGTAGGAGGTACACAGTCAGCGTGTTTGAATCAGGACATACCACCATCCCTATTTGCTATTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCATCCG------CTGCAGAGGGACCCAGAGGGGAGGGCACCGCGGCC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91985736 202 - 92844088 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGATCTCATCCTATCCCAGTAGAAAGCACACAGTTAGTGTGTTTGAATCA-GAAATACCAGCATCTCTATTTGCTGTTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCAGCCGCAGCCACGGCAGAGGGACCCAGCGGGAAGGGCACCGTGACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633258 202 + 96509753 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGATCTCATCCTATCCCAGTAGGAAGCACACAGTTAGTGTGTTTGAATCA-GAAATACCAGCATCTCTATTTGCTGTTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCAGCCGCAGCCACGGCAGAGGGACCCAGCGGGGAGGGCACCGTGACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16088833 202 - 16982598 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGATCTCATCCTATCCCAGTAGGAAGCACACAGTTAGTGTGTTTGAATCA-GAAATACCAGCATCTCTATTTGCTGTTTAAGACTAATCAGGTAAACCCCAAAGAAAAACAcagaagcagccgcagccgcagccacagcagAGGGACCCAGCAGGGAGGGCACCGTGACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932183 196 - 3785965 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGATCTCATCCTATCCCAGTAGGAAGCACACAGTTAGTGTGTGTGAATCA-GAAATACCAGCATCTCTATCTGCTGTTTAAGACTAACCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCAGCCG------CGGCAGAGGGACCCAGCGGGGAGGGCACCGTGACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89603657 195 - 90373283 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGATCTCATCCTA-CCCAGTAGGACGTACACAGTTAGCATGTTTGAATCA-GAAATACCAGCATCCCTATTTGCTGTTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCAGCCG------CGGCAGAGGGACCCAGCGGGGAGGGCACCGTGACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480040 196 + 6149316 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGATCTCATCCTATCCCAGTAGGAAGCACACAGTTAGTGTGTTTGAATCA-GAAATCCCAGCATCTCTATTTGCTGCTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCACAGCCG------CGGCAGAGGGACCCAGCGGGGAGGGCACCGTGACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4712786 196 - 5823884 CCCCAAAGGCTGCAAGAAAGGGAAATTGGGGGTAGAGCTCATCCTATCCCAGGAGGAGGCACACAGTTAGCGTGTTTGAATCA-GAAATACCAGCATCCCTATTTGCTGTTTAAGACTAATCAGGTAAACCCCAAAGAAAAACACAGAAGCAGCCGCAGCCA------CCGCAGTGGGACCCAGAGGGGAGGGCACCGTGACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57422972 193 + 159171411 -CCCAAAGGCAGCAAGAAAGGGAAATC-AGGGTGGATCTCACTCTCTCCCAGTAGGAGGTACACAGTCAGCATGTTTCAGTCGGGGAATACCAGCATCCCTATTTGCTGTTTGGAATTAATCAGATAAACCCCAAAGCAAAGCACAGAAGCGGCCCCATCCA------CCATGGAGGGGCCCGG--GGAAGGGCACGGTGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15544589 191 + 16356641 GGGCAAAGGCCGCAAGAAAGGGAAATC-TGGGTGGGTCTCACTCTCTCCCAGTGGGAGGTTCACAGTTAGAACGTTTCGGTCGGGGAATACCAGCGT-CCTATTTGCTGTTTGGGACTAATCAGGTCAACCCCAAAGCAAAGCACAGAAGCGGCCCCATCCA------CCACGG-GGGACCCAG--GG-AGGGCGCGGCGGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 390562 194 + 1231380 CCCCAAAGGCCGCAAGAAAGGGAAATC-GGGGTAGATCTCACTCTCTGCCAGTAGGAGGTACACAGTTAGCATGTTTCAATCGGGGAATACCAGCATCCCTATTTGCTGTTTGGGACTAATCAGGTAAACCCCAAAGCGAAGCACAGAAGCGGCCCCATTCA------CCACGGAGGGACCCGG--GGGAAGGCACAGTGGGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951218 181 + 11732439 CCCCAAAGGCTGCGAGAAAGGGAAATC-GGGGTGGATCTCAGTCTCTCCCAGCAGGAGGTACAC----AGCATGATTCAGTCGGGGAAGACCAGCATCCCTATTTGCTGTTTGGGGCTAATCAGGT-------AAAGCAAAGCACAG--GCGGCCCCATCCA------CTGCGGAGGGACCCAG--GGGAGGGCGCGGCAGCC i aotNan1.NW_018500483v1 I 17 I 52 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=271243.000000 s hg38.chr20_KI270871v1_alt 28045 58 + 58661 ACAGAGTGGGGCTCTATTCTCACCATAAGGCTTAGTAACTCTCTGACATTTAAAAATA s panTro5.chr20 65597789 58 + 66533130 GCAGAGTGGGGCTCTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366118 58 + 62195757 GCAGAGTGGGGCTCTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777380 57 - 1017659 GCAGAGTGGGGCTCTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTT-AAAATA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91985938 58 - 92844088 ACAGAGCGGGGCTGTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633460 58 + 96509753 ACAGAGCGGGGCTGTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089035 58 - 16982598 ACAGAGCGGGGCTCTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932379 58 - 3785965 ACAGAGCGGGGCTGTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89603852 58 - 90373283 ACAGAGCGGGGCTGTATTCTCACCATAAGGCTTACGAACTGTCTGACATTTAAAAATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480236 58 + 6149316 ACAGAGCGGGGCTGTATTCTCACCATAAGGCTTAGGAACTGTCTGACATTTAAAAATA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4712982 58 - 5823884 ACAGAGTGGGGCTGTATTCTCACCATAAGGCTTAGGAACTGTCGGACATTTAAAAATA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57423165 24 + 159171411 GCAGAGC-CAGCTATATTCTCACCT--------------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15544780 24 + 16356641 ACAGAGC-CGGCTGTATTCTCACCT--------------------------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 390756 24 + 1231380 GCAGAGC-CGGCTGTATTCTCACCT--------------------------------- i cebCap1.NW_016107870v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1951399 52 + 11732439 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=379156.000000 s hg38.chr20_KI270871v1_alt 28103 52 + 58661 TACACAAGCATTACTCTGAAAAAACACC------------------CAATCGTAAAGATAAGAAGGCTGT s panTro5.chr20 65597847 52 + 66533130 TACACAAGCATTACTCTGAAAAAACACC------------------CAATTGTAAAGATAAGGAGGCTGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366176 52 + 62195757 TACACAAGCATTACTCTGAAAAAACACC------------------CAATTGTAAAGATAAGGAGGCTGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777437 51 - 1017659 TACACAAGCATTACTCTGAAAAAACA-C------------------CAATCGTAAAGATAAGAAGGCTGT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91985996 68 - 92844088 TACACAAGCATTACTCAGAAAAAACACCCAAATAAAAACCCCAATTCAATCGTAAAGATAAGAAAAC--T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633518 68 + 96509753 TACACAAGCATTACTCAGAAAAAACACCCAAATAAAAACCCCAATTCAATCGTAAAGATAAGAAAAC--T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089093 68 - 16982598 TACACAAGCATTACTCAGAAAAAACACCCAAATAAAAACCCCAATTCAATCGTAAAGATAAGAAAAC--T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932437 68 - 3785965 TACACAAGCATTACTCAGAAAAAACACCCAAATAAAAACCCCAATTCAATCGTAAAGATAAGAAGAC--T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89603910 68 - 90373283 TACACAAGCATTACTCAGAAAAAACACCCAAATAAAAACCTCAATTCAATCGTAAAGATAAGAAGAC--T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480294 68 + 6149316 TACACAAGCATTACTCAGAAAAAACACCCAAATAAAAACCCCAATTCAATCGTAAAGATAAGAAGAC--T i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713040 68 - 5823884 TACACCAGCATTACTCCGAAAAAACACCCAAATAAAAATCCCAATTCAATCGTAAAGATGAGAAGAC--T i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57423189 68 + 159171411 GACGCGAGCAAGACCCCGAAAAAAAAC--AAATAAAAATGTCAGTCCAATCCCAAAAATAAGAAGGCTGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15544804 68 + 16356641 TACACAAGCATGACTCCGAAAAAACCC--AAATAAAAATCTCAATCCAGTCCTAAAGATAAGAAGGCTGT i saiBol1.JH378156 C 0 I 24 s cebCap1.NW_016107870v1 390780 68 + 1231380 TACACAAGCATGACTCCGAAAAAAAAC--AAATAAAAATCTCAATCCAATCCTGAAGGTAAGAAGGCTGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951451 67 + 11732439 CACACAAGCATGACTCC-AAAAAACGC--AAATAAAAATCTCAATCTAATCCTAAAGATAAGAAGACTGT i aotNan1.NW_018500483v1 I 52 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=285350.000000 s hg38.chr20_KI270871v1_alt 28155 54 + 58661 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCCCCATCAAAAGTCCTAGGGCCC s panTro5.chr20 65597899 54 + 66533130 TGCCCACAAAAGACCTGGGGGATGGCCTTGTCCCCATCCAAAGTCCTAGGGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366228 54 + 62195757 TGCCCACAAAAGACCTGGGGGATGGCCTTGTCCCCATCCAAAGTCCTAGGGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777488 54 - 1017659 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCCCCATCGAAAGTCCTAGGGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986064 54 - 92844088 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCCCCACTGAAAGCCCGAGGGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633586 54 + 96509753 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCCCCACTGAAAGCCCGAGGGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089161 54 - 16982598 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCTCCACTGAAAGCCCGAGGGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932505 54 - 3785965 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCCCCACTGAAAGCCCGAGGGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89603978 54 - 90373283 TGCCCACAAAAGACCTGGGGGATGGGCTTGTCCCCACTGAAAGACCAAGGGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480362 54 + 6149316 TGCCCACAAAAGGCCTGGGGGATGGGCTTGTCCCCACTGAAAGCCCGAGGGCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713108 54 - 5823884 TGCCCACAAAAGACCTGGGGGATGGGCTTCTCCCCACTGAAAGCCCTAAGGCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57423257 28 + 159171411 TGC-------------------------CGCCTCCACTG-AAGCCCTAGGGCTC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 390848 23 + 1231380 TGC------------------------------CCACCG-AAGCCGTAGGGCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951518 52 + 11732439 TGCCCACAGAAGACCTGGGGGCCAGGC-CGCCCCCACCA-AAGCCCTAGGGCCC i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15544872 24 + 16356641 I a score=2379955.000000 s hg38.chr20_KI270871v1_alt 28209 305 + 58661 AGCAGTCACAGCTCAGGACGCCCCGGGCCCCACCCTGACCCTGTGGTGGGGCCTGAACCACACAA--------GATGGCTCAGTGAGTCCAGGTCATCTGTATGGTCCACAGCCTGGGCCCCAGGGCACGCTCAGCTCTCAACCCCCACCCAAGCCCCGACTGGGAAGACAGTGTCCAGGTCTCATGAAATTAATAAAATAACTTCGGATCAGCTGCATCCGGCTTAGGCACCAGGTGGAGCTGCCCATGCCTTCCCCGCAGGGCTGAGCCCACTCAGCCGGCATGTGCGGGGCTAGGCCCAGGGTCTGGTCT s panTro5.chr20 65597953 305 + 66533130 AGCAGTCACAGCTCAGGATGCCCCGGGCCCCACACTGACCCTATGGCGGGGCCTGAACCACACAA--------GATGGCTCAGTGAGTCCAGGTTATCTGCCTGGTCCACAGCCTGGGCCCCGGGGCATGCTCAGCTCTCAACCCCCACCCAAGCCCCGACTGGGAAGACAGTGTCCAGGTCTCATGAAATTAATAAAATAACTTCGGATCAGCTGCATCCGGCTTAGGCACCAGGTGGAGCTGCCCATGCCTTCCCCGCAGGGCTGAGCCCACTCAGCCGGCATGTGCGGGGCTAGGCCCGGGGTCTGGTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366282 305 + 62195757 AGCAGTCACAGCTCAGGATGCCCCGGGCCCCACACTGACCCTATGGCGGGGCCTGAACCACACAA--------GATGGCTCAGTGAGTCCAGGTTATCTGCCTGGTCCACAGCCTGGGCCCCGGGGCATGCTCAGCTCTCAACCCCCACCCAAGCCCCGACTGGGAAGACAGTGTCCAGGTCTCATGAAATTAATAAAATAACTTCGGATCAGCTGCATCCGGCTTAGGCACCAGGTGGAGCTGCCCATGCCTTCCCCGCAGGGCTGAGCCCACTCAGCCGGCATGTGCGGGGCTAGGCCCGGGGTCTGGTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777542 304 - 1017659 AGCAGTCACAGCTCAGGATGCCCCAGGCCCCACACTGATCCTATGGCGGGGCCTGAACCACATAT--------GATGGCTCAGTGAGTCCAGGTCATCTGCCTGGTCCACAGCCTGGGCCCTGGGGCACGCTCAGCTCTCAA-CCCCACCCAAGCCCCGACTGGGAAGACAGTGTCCAGGTCTCATGAAATTAATAAAATAACTTCGGATCAGCTGCATCCGGCTTAGGCACCAGGTAGAGCTGCCCATGCCTTCCCCGCAGGGCTGAGCCCACTCAGCCGGCATGTGCGGGGCTAGGCCCGGGGTCTGGTCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986118 298 - 92844088 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACACTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCCGGGGCACGCTCAGCTCTCAACCCCCACCCAAGCCCTGCCTGGGAAGACAGTGCCTGGGTCTCATGAAATT-----AATAACTTCAGATCAGCTGCATCCAGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCGCAGGGCTGAGCCCACTCAGCCAGCGTGTGCGGGGCTGGGCCTGGGGTCTGGTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633640 298 + 96509753 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACGCTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCCGGGGCACGCTCAGCTCTCAACCCCCACCCAAGCCCTGCCTGGGAAGACAGTGCCTGGGTCTCATGAAATT-----AATAACTTCAGATCAGCTGCATCCAGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCGCAGGGCTGAGCCCACTCAGCCAGCGTGTGCGGGGCTGGGCCTGGGGTCTGGTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089215 298 - 16982598 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACGCTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCCAGGGCACGCTCAGCTCTCAACCCCCACCCAAGCCCTGCCTGGGAAGACAGTGCCTGGGTCTCATGAAATT-----AATAACTTCAGATCAGCTGCATCCCGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCACAGGGCTGAGCCCACTCAGCCAGCGTGTGCGGGGCTGGGCCTGGGGTCTGGTCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932559 298 - 3785965 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACGCTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCCGGGGCACGCTCAGCTCTCAACCCCCACCCAAGCCCTGCCTGGGAAGACAGTGCCTGGGTCTCATGCAATT-----AATAACTTCAGATCAGCTGCATCCAGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCGCAGGGCTGAGCCCACTCAGCCAGCGTGTGCGGGGCTGGGCCTGGGGTCTGGTCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89604032 303 - 90373283 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACGCTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCGGGGGCACGCTCGGCTCTCAACCCCCACCCAAGCCCTGCCTGGGAAGACAGCGCCTGGGTCTCATGAAATTAATAAAATAACTTCAGATCAGCTGCATCCAGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCGCAGGGCTGAGCCCACTCAGCCAGCGTGTGCGGGGCTGGGCCTGGGGTCTGGTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480416 298 + 6149316 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACGCTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCCGGGGCACGCTCAGCTCTCAACTCCCACCCAAGCCCTGCCTGGGAAGACAGTGCCTGGGTCTCATGCAATT-----AATAACTTCAGATCAGCTGCATCCAGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCGCAGGGCTGAGCCCACTCAGCCAGCGTGTGCGGGGCTGGGCCTGGGGTCTGCTCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713162 303 - 5823884 GGCAGTCACAGCTCAGGATGCCCTGGGCCTCACGCTGACCCTACGGTGGGGCCTGAACCACAC----------GATGGCTCAGTGAGTCCAGGTCGTCTGCCTGGTCCACAGCCTGGGCCCCGGGGCACGCTCAGCTCTCAACCCCCACCCAAGCCCTGCCTGGGAAGACAGTGCCTGGGTCTCATGAAATTAATAAAATAACTTCAGATCAGCTGCTTCCAGCTTAGGCACCAGGTGGAGCTGCCCACACCTTTCCCGCAGGGATAAGCCCACTCGGCCAGCGTGTGCAGGGCTGGGCCTGGGGTCTGGTCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57423285 307 + 159171411 AGCAGTCACAGCTCAGGATGTCCCGGGCT-CATGTTGACTCCGTGGCAGGGCCAAAGCCACACACATGGCTCCGTGAGCTCAGTGAGCTCAGGACATCCACATGGTCCACAGCCTGGG-CCC-GGGCACACTCAGCTCTCAACCCCTACCCAAGCCCTGCTTGGGAAGACAGAGTATGGGTCTCATGCAGTTAATAAAAT-ATTTCAGATCAGTTGCTTGTGCCTTGGGCACCAGGTGGAGCTACCCACACCTTCCCCATGGGGCTGAG-CCACTTGGCTGGCATGTGTGGGGCTGGG-CTGGGGCCTGGTCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15544896 305 + 16356641 AGCAGCCACAGCTCAGGATG-CCCGGGCC-CACGCTGACCCCATG---TGGCCAAAACCACACACGTGGCTCCGGGAGCTCAGTGAGTCCAGGTCGTGCACCTGGTCCCCAGCCTGGGCCCC-GGGCACACTCAGCTCTCAACCCCCACCCAAGCCCTGCTTGGGAAGACAGCGTCCGGGTCTCATGCAGTTCATAAAATAATTTCAGATCAGCTGCGTGTGGCTTGGGCACTGGGTGGAGCTGCCCACACCTTCCCCCAGGGGCTGAG-CCACTCGGCCAACACGTGGGGGGCTGGG-CTGGGGCCTGGCCT i saiBol1.JH378156 I 24 C 0 s cebCap1.NW_016107870v1 390871 306 + 1231380 AGCAGTCACAGCTCAGGACGCCCCGGGCC-CACGCTGACCCCATGGCGGGGCCGAAACCACACCTGTGGCTCCGTGCGCTCAGTGAGCCCAGGTCAT---CCTGGTCCACAGCCTGGGCCCC-GGGCACACTCAGCTCTCAACCGCCACCCAAGCCCTGCTTGGGAAGACAGCGTCCGGGTCTTATGCAGTTAATAAAATAATTTCAGATCAGCTGCGTGTGGCTTGGGCACCAGGTGGAGCTGCCCACACCTTCTCCACGGGGCTGAG-CCACTCGGTAGGCATGTATTGGGCTGGG-CTGGGGCCCGGTTT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951570 309 + 11732439 AGCAGTCACAGTTCAGGACACCCCGGGCC-CACGCTGACCCCGTGGTGGGGCTGAAACCACACACATGGCTCCGTGAGCTCAGTGAGCCCAGGTCGTCCGCCTGGTCCACAGCCTGGGCCCC-GGGCACACTCGGCTCTCAACCCCCACCCAAGCCCCGCTTGGGAAGACAGCGTCCGGGTCTCATGCAGTTAATAAAATGATTTCAGATCAGCTGTGTGTGGCCTGGGTACCAGGCGGAGCTGCCCGCACCTTCCCCACGGGGCTGAG-CCACTCGGCCGGCATGTGTGGAGCCGGC-CTGGGGCCTGGTCT i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C a score=457729.000000 s hg38.chr20_KI270871v1_alt 28514 61 + 58661 CAGCCTCCCAGGAGAGCACAGACCCTGCCCCTGTGCACCAGCAGCCTGAGGGTGTCTGTGG s panTro5.chr20 65598258 61 + 66533130 CAGCCTCCCAGGAGACCACAGACCCTGCGCCTGCGCACCAGCAGCCTGAGGGTGTCTGTGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366587 61 + 62195757 CAGCCTCCCAGGAGACCACAGACCCTGCCCCTGCGCACCAGCAGCCTGAGGGTGTCTGTGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777846 61 - 1017659 CAGCCTCCCAGGAGAGCACAGACCCTGCCCCTGCGCACCATCAGCCTGAGGGTGTCTGTGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986416 61 - 92844088 CAGCCTCCCAGGAGACCACAGACCCCGCCCCTGCACACCACCAGCCTGAGGGTGTCTGTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633938 61 + 96509753 CAGCCTCCCAGGAGACCACAGACCCCGCCCCTGCACACCACCAGCCTGAGGGTGTCTGTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089513 61 - 16982598 CAGCCTCCCAGGAGACCACAGACCCCGCCCCTGCGCACCACCAGCCTGAGGGTGTCTGTGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932857 61 - 3785965 CAGCCTCCCAGGAGACCACAGACCCCGCCCCTGCGCACCACCAGCCTGAGGCTGTCTGTGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89604335 61 - 90373283 CAGCCTCCCAGGAGACCACAGACCCTGCCCCTGCACACCACCAGCCTGAGGGTGTCTGTGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480714 61 + 6149316 CAGCCTCCCAGGAGACCACAGACCCCGCCCCTGCGCACCACCAGCCTGAGGGTGTCTGTGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713465 60 - 5823884 CAGCCTCCCAGGAGACCACA-ACCCTGCCCCTGCGCACCACCAGCCTGAGGGTGTCTGTGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57423592 60 + 159171411 CAGCCTCCCAGGAGACCACACACCCTGC-CCTGCACACCACCAACCTGAGGGTGCCTGTGG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 391177 60 + 1231380 CAGCCTCCCAGGAGACCACACACCCTGC-CTTTCACACCACCAGCCCGAGGGTGCCTGTGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951879 60 + 11732439 CAGCCTCCCAGGAGACCACACACCCAGC-CCTGCGCACCACCAGACCGAGGGTGCCTGTGG i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115171 320 + 555560 I e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15545201 0 + 16356641 C a score=262423.000000 s hg38.chr20_KI270871v1_alt 28575 34 + 58661 CCCCAGGTGAGGAGGAGCCCAGGGGCCAGATCTG s panTro5.chr20 65598319 34 + 66533130 CCCCAGGTGAGGACGAGCCCAGGGGCCAGATCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366648 34 + 62195757 CCCCAGGTGAGGACGAGCCCAGGGGCCAGATCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777907 34 - 1017659 CCCCAGGGGAGGAGGAGCCCAGGGGCCAGATCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986477 34 - 92844088 CCCCAGGTGAGGAGGAGCCCGGGGCCCAGATCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95633999 34 + 96509753 CCCCAGGTGAGGAGGAGCCCGGGGCCCAGATCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089574 34 - 16982598 CCCCAGGTGAGGAGGAGCCCGGGGCCCAGATCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932918 34 - 3785965 CCCCAGGTGAGGAGGAACCCGGGGCCCAGATCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89604396 34 - 90373283 CCCCAGGTGAGGAGGAGCCCAGGGCCCAGATCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480775 34 + 6149316 CCCCAGGTGAGGAGGAGCCCGGGGCCCAGATCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713525 34 - 5823884 CCCCAGGTGAGGAGGAGCCCGGGGCCCAGATCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57423652 34 + 159171411 CCCCAGGTGGGGAGGAGCCTGGGAGCCAGGTCTG i calJac3.chr5 C 0 I 870 s cebCap1.NW_016107870v1 391237 34 + 1231380 CCGCAGGTTGGGGGGAGCCCGGGAGCCAGGTCTG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951939 34 + 11732439 CCCCGGATGGGGAGGAGCCTGGGAGCCAGATCTG i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 115491 33 + 555560 CCACACATGAGGAGG-GCCCACGGGCCAGGCACC i dasNov3.JH567899 I 320 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15545201 0 + 16356641 C a score=266350.000000 s hg38.chr20_KI270871v1_alt 28609 37 + 58661 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT s panTro5.chr20 65598353 37 + 66533130 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366682 37 + 62195757 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777941 37 - 1017659 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986511 37 - 92844088 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634033 37 + 96509753 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089608 37 - 16982598 TTCAGACCTGATCAGAGTGGGGCCTGCAGAGCCACCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932952 37 - 3785965 TTCAGACCTGATCAGAGTGGGGCCTGCGGAGCCACCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89604430 37 - 90373283 TTCAGACCTGATCAGAGTGGGGCCTGCGGAGCCACCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480809 37 + 6149316 TTCAGACCTGATCAGAGTGGGGCCTGCGGAGCCACCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713559 37 - 5823884 TTCAGACCTGATCAGAGTGGGGCCTGCGGAGCCACCT i colAng1.NW_012114444v1 C 0 C 0 s cebCap1.NW_016107870v1 391271 37 + 1231380 TTCAGACCTGATCGAAGTGGGGCCTGCAGAGCCGCCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1951973 37 + 11732439 TTCAGACCTGATCGGAGTGGGGCCTGCGGAGCCGCCT i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 115524 18 + 555560 ------CTCGGACAGAGT-------------CCACCC i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15545201 0 + 16356641 C e calJac3.chr5 57423686 870 + 159171411 I a score=69087.000000 s hg38.chr20_KI270871v1_alt 28646 11 + 58661 AGTCTCCAAAA s panTro5.chr20 65598390 11 + 66533130 AGTCTCCAAAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366719 11 + 62195757 AGTCTCCAAAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777978 11 - 1017659 AGTCTCCAAAA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986548 11 - 92844088 GGTCTCCAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634070 11 + 96509753 GGTCTCCAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16089645 11 - 16982598 GGTCTCCAAAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2932989 11 - 3785965 GGTCTCCAAAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89604467 11 - 90373283 GGTCTCCAAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5480846 11 + 6149316 GGTCTCCAAAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4713596 11 - 5823884 GGTCTCCAAAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424556 10 + 159171411 AGCCTCTGAA- i calJac3.chr5 I 870 C 0 s cebCap1.NW_016107870v1 391308 11 + 1231380 AGTCTCCAAAA i cebCap1.NW_016107870v1 C 0 I 359 s aotNan1.NW_018500483v1 1952010 11 + 11732439 GGTCTCCAAAA i aotNan1.NW_018500483v1 C 0 I 357 s dasNov3.JH567899 115542 3 + 555560 TGT-------- i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15545201 0 + 16356641 C a score=10505.000000 s hg38.chr20_KI270871v1_alt 28657 2 + 58661 AC s panTro5.chr20 65598401 2 + 66533130 AC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366730 2 + 62195757 AC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777989 2 - 1017659 AC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986559 2 - 92844088 AC i rheMac8.chr10 C 0 I 420 s macFas5.chr10 95634081 2 + 96509753 AC i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16089656 2 - 16982598 AC i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2933000 2 - 3785965 AC i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89604478 2 - 90373283 AC i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5480857 2 + 6149316 AC i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4713607 2 - 5823884 AC i colAng1.NW_012114444v1 C 0 I 1 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115545 0 + 555560 C e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1952021 357 + 11732439 I e cebCap1.NW_016107870v1 391319 359 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e saiBol1.JH378156 15545201 0 + 16356641 C e calJac3.chr5 57424566 0 + 159171411 C a score=422.000000 s hg38.chr20_KI270871v1_alt 28659 1 + 58661 T s panTro5.chr20 65598403 1 + 66533130 T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366732 1 + 62195757 T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777991 1 - 1017659 T i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57424566 1 + 159171411 C i calJac3.chr5 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115545 0 + 555560 C e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1952021 357 + 11732439 I e cebCap1.NW_016107870v1 391319 359 + 1231380 I e canFam3.chr24 47084941 1802 + 47698779 I e otoGar3.GL873542 22168459 0 + 22939663 C e manLeu1.NW_012104365v1 5480859 1 + 6149316 I e saiBol1.JH378156 15545201 0 + 16356641 C e colAng1.NW_012114444v1 4713609 1 - 5823884 I e chlSab2.chr2 89604480 1 - 90373283 I e cerAty1.NW_012001373v1 2933002 1 - 3785965 I e macNem1.NW_012014244v1 16089658 1 - 16982598 I e macFas5.chr10 95634083 1 + 96509753 I e rheMac8.chr10 91986561 420 - 92844088 I a score=52060.000000 s hg38.chr20_KI270871v1_alt 28660 6 + 58661 CAGGGC s panTro5.chr20 65598404 6 + 66533130 CACGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366733 6 + 62195757 CACGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777992 6 - 1017659 CAGGGC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986981 6 - 92844088 CAGGGT i rheMac8.chr10 I 420 C 0 s macFas5.chr10 95634084 6 + 96509753 CAGGGC i macFas5.chr10 I 1 I 419 s macNem1.NW_012014244v1 16089659 6 - 16982598 CAGGGC i macNem1.NW_012014244v1 I 1 I 419 s cerAty1.NW_012001373v1 2933003 6 - 3785965 CAGGGC i cerAty1.NW_012001373v1 I 1 I 419 s chlSab2.chr2 89604481 6 - 90373283 CAGGGC i chlSab2.chr2 I 1 I 419 s manLeu1.NW_012104365v1 5480860 6 + 6149316 CAGGGC i manLeu1.NW_012104365v1 I 1 I 419 s colAng1.NW_012114444v1 4713610 6 - 5823884 CAGGGC i colAng1.NW_012114444v1 I 1 I 421 s calJac3.chr5 57424567 6 + 159171411 CAGGGT i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 391678 6 + 1231380 CAGGGT i cebCap1.NW_016107870v1 I 359 C 0 s aotNan1.NW_018500483v1 1952378 6 + 11732439 CAGGGT i aotNan1.NW_018500483v1 I 357 C 0 s otoGar3.GL873542 22168459 6 + 22939663 CAGGGT i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 115545 3 + 555560 ---GGC i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e saiBol1.JH378156 15545201 0 + 16356641 C a score=742717.000000 s hg38.chr20_KI270871v1_alt 28666 116 + 58661 TGCCCAGGACAGATCTCCTAGGGATGCCTCTTCTCCCCTTTCCCCCAATAATC------GGGACACGGAGCAGGT-GGAGGGTCACTCAGGAGGAAGGAAGAT-GCCCACCACGGCTGAGCTCA s panTro5.chr20 65598410 110 + 66533130 TGCCCAGGATAGATCTCCTAGGGATGCCTCTTCTCCCCTTTCCCCCAATAATC------GGGACATGGAGCAGGT-GGAGGGTCACTCAGGAGGAAGGAAGAT-GCCCACCACAGC-GA----- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366739 110 + 62195757 TGCCCAGGATAGATCTCCTAGGGATGCCTCTTCTCCCCTTTCCCCCAATAATC------GGGACATGGAGCAGGT-GGAGGGTCACTCAGGAGGAAGGAAGAT-GCCCACCACAGC-GA----- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 777998 110 - 1017659 TGCCCAGGACAGATCTCCTAGGGATGCCTCTTCTCCCCTTTCCCCCAATAATC------GGGACACGGAGCAGGT-GCAGGGTCACTTGGGAGGAAGGAAGAT-GCCCACCACGGC-TG----- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91986987 108 - 92844088 TGCCCAGGACAGATCTCCTAGAGATGCCGCTTCTCCCCCTTCCCCCAACGATC------AGGACACAGAGCAGGT-GTAGGATCACTCAGGAGGAAGGATGAT-GCCCACCACAGC-------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634509 108 + 96509753 TGCCCAGGACAGATCTCCTAGAGATGCCGCTTCTCCCCCTTCCCCCAACGATC------AGGACACAGAGCAGGT-GTAGGATCACTCAGGAGGAAGGATGAT-GCCCACCACAGC-------- i macFas5.chr10 I 419 C 0 s macNem1.NW_012014244v1 16090084 108 - 16982598 TGCCCAGGACAGATCTCCTAGAGATGCCTCTTCTCCCCCTTCCCCCAACGATC------AGGACACAGAGCAGGT-GTAGGATCACTCAGGAGGAAGGATGAG-GCCCACCACAGC-------- i macNem1.NW_012014244v1 I 419 C 0 s cerAty1.NW_012001373v1 2933428 108 - 3785965 TGCCCAGGACAGATCTCCTAGAGACGCCTCTTCTCCCCCTTCCCCCAACGATC------AGGACACAGAGCAGGT-GTAGGATCACTCAGGAGGAAGGATGAT-GCCCACCGCAGC-------- i cerAty1.NW_012001373v1 I 419 C 0 s chlSab2.chr2 89604906 108 - 90373283 TGCCCAGGACAGATCTCCTAAAGACGCCTCTTCTCCCCCTTCCCCCAACGATC------AGGACACAGAGCAGGT-GGAGGATCACTCAGGAGGAAGGATGAT-GCCCACCACAAC-------- i chlSab2.chr2 I 419 C 0 s manLeu1.NW_012104365v1 5481285 108 + 6149316 TGCCCAGGACAGATCTCCTAGAGACGCCTCTTCTCCCCCTTCCCCCAACGATC------AGGACACAGAGCAGGT-GTAGGATCACTCAGGAGGAAGGATGAT-GCCCACCGCAGC-------- i manLeu1.NW_012104365v1 I 419 C 0 s colAng1.NW_012114444v1 4714037 108 - 5823884 TGCCCAGGACAGATCTCCCAGATACGCCTCTTCTCCCCCTTCCCCCAATGATC------AGGACACAGAGCAGGT-GGAGGATCACTCAGGAAGAAGGAAGAT-GCCGACCACAGC-------- i colAng1.NW_012114444v1 I 421 C 0 s calJac3.chr5 57424573 107 + 159171411 TGCCCAGGACAGACCTCCTAGGGATGCCTCTTCTCTCCCTTCCCCCAACAATC------TGGACAAGGAGCAGGTGGGGGGGTCACTCAGGAGGAA-GAAGAT--CCCACCATGGC-------- i calJac3.chr5 C 0 I 9 s cebCap1.NW_016107870v1 391684 106 + 1231380 TGCCCAGGACAGATCTCCTAGGGACGCCTCTTCTCTCCCTTCCCCCAACAATC------GGGACAAGGAGCAGGT-GGGGGGTCCCTCAGGAGGAA-GAAGAT--CCCACCACCGC-------- i cebCap1.NW_016107870v1 C 0 I 73 s aotNan1.NW_018500483v1 1952384 106 + 11732439 TGCCCAGGACAGACCTCCTAGGGACGCCCCTTCTCTGCCTTCCCCCAACAATC------AGGACAAGGAGTAGGT-GGGGGGTCACTCGGGAGGAA-GAAGAT--CCCACCACGGC-------- i aotNan1.NW_018500483v1 C 0 I 59 s otoGar3.GL873542 22168465 93 + 22939663 -TCCCAGGACAGA----CTGGGG-----TCACCTCCTCCTTCGCCCCATGGTC------------CTAAGTAAAC-CAGAGGTGGTCAAGGATGAAGGAAGACAGCCCTCCATGGC-------- i otoGar3.GL873542 C 0 I 4 s dasNov3.JH567899 115548 66 + 555560 TGC------------TCCCAGAG--------CCTCCCCCTACCCTCGGAAGTCCCAGGTGGGCCGTggggcaggg-gg---------cagggggca---------------------------- i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e canFam3.chr24 47084941 1802 + 47698779 I e saiBol1.JH378156 15545201 0 + 16356641 C a score=300.000000 s hg38.chr20_KI270871v1_alt 28782 1 + 58661 G s canFam3.chr24 47086743 1 + 47698779 G i canFam3.chr24 I 1802 C 0 s dasNov3.JH567899 115614 1 + 555560 g i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1952490 59 + 11732439 I e cebCap1.NW_016107870v1 391790 73 + 1231380 I e otoGar3.GL873542 22168558 4 + 22939663 I e manLeu1.NW_012104365v1 5481393 0 + 6149316 C e saiBol1.JH378156 15545201 0 + 16356641 C e calJac3.chr5 57424680 9 + 159171411 I e colAng1.NW_012114444v1 4714145 0 - 5823884 C e chlSab2.chr2 89605014 0 - 90373283 C e cerAty1.NW_012001373v1 2933536 0 - 3785965 C e macNem1.NW_012014244v1 16090192 0 - 16982598 C e macFas5.chr10 95634617 0 + 96509753 C e rheMac8.chr10 91987095 0 - 92844088 C e gorGor5.CYUI01015750v1 778108 0 - 1017659 C e panPan2.chr20 61366849 0 + 62195757 C e panTro5.chr20 65598520 0 + 66533130 C a score=354406.000000 s hg38.chr20_KI270871v1_alt 28783 106 + 58661 GAGGAAGGAAGATGCCCACCACGGCTGAGCT-CAGGCTC-TCTG--GGGCCCAGCCCTCCC-----CACCCACTCCCCCGCCAGCTTGGCAACCACCACCCCGCCTCGACCACAA s panTro5.chr20 65598520 79 + 66533130 ---------------------------AGCT-TAGGCTC-CCTG--GGGCCCAGCCCTCCC-----CACCCACTCCCCCGCCAGCTTGGCAACCACCACCCCGCCTCAACCACAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366849 79 + 62195757 ---------------------------AGCT-TAGGCTC-CCTG--GGGCCCAGCCCTCCC-----CACCCACTCCCCCGCCAGCTTGGCAACCACCACCCCGCCTCAACCACAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778108 79 - 1017659 ---------------------------AGCT-CACGCTC-TCTG--GGGCCCAGCCCTCTC-----CACCCACTCCCCTGCCAGCTTGGCAACCACCACCCCGCCTCAACCACAA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987095 81 - 92844088 -------------------------TGAGCT-CAGGCCC-CATG--GGGCCCAGCCCTCCC-----CACCTGCTCCCCCGCCAGCGTGGCAACCGCCACCCCGCCTCAACCACGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634617 81 + 96509753 -------------------------TGAGCT-CAGGCCC-CATG--GGGCCCAGCCCTCCC-----CACCTGCTCCCCCGCCAGCGTGGCAACCGCCACCCCGCCTCAACCACGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090192 81 - 16982598 -------------------------TGAGCT-CAGGCCC-CATG--GGGCCCAGCCCTCCC-----CACCTGCTCCCCCGCCAGCGTGGCAACCGCCACCCCGCCTCAACCACGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933536 81 - 3785965 -------------------------TGAGCT-CAGGCTC-CCTG--GGGCCCAGCCCTCCC-----CACCTGCTCCCCCGCCAGCGTGGCAACCGCCACCCCGCCTCAACCACGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605014 81 - 90373283 -------------------------TGAGCT-CAGGCTT-CCTG--GGGCCCAGCCCTCCC-----CACCTGCTCTCCCACCAGCGTGGCAACTGCCACCCCGCCTCAACCACGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481393 81 + 6149316 -------------------------TGAGCT-CAGGCTC-CCTG--GGGCCCAGCCCTCCC-----CACCTGCTCCCCTGCCAGCGTGGCAACCGCCACCCCGCCTCAACCACGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714145 81 - 5823884 -------------------------TGAGCT-CAGGCTC-CCTG--GGGCCCAGCCCTCCC-----CACCTGCTCCCCCACCAGCGTGGCAACCGTCACCCCGCCTCAACCACAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424689 63 + 159171411 ---------------------------CGCT-GCCACCCACCCT--GGGCCCAGCCCTCCC-----CACCCAAACCCCTGC-----------------CTCAGCCACGACCATGT i calJac3.chr5 I 9 C 0 s otoGar3.GL873542 22168562 65 + 22939663 ------------------------------------------AG--GAGGCTGCCCCAGGC-----CACCTGCACACTCATAGGC-CATCCATGATCACCCAGCCTCTGCAGCCA i otoGar3.GL873542 I 4 I 14 s canFam3.chr24 47086744 89 + 47698779 AAGAAAGGGGAGTGACCACCAGAGCTGGGCA-CAGGCTC-CCCG--GGGCGGTGCACACCCGGGAGCACCCACCCCCC--------------CCAGCATCCTGCTCC-------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 115615 85 + 555560 ------------ggggcagggACCCTGAGCTGCAGCCCC-CCTGGCGGGGCCTCTCCCCCA-----CATCTGCCCCCCCCCCGGCCTGG----------CTCGCCGCTGCTGC-- i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e mm10.chr2 181110084 1750 + 182113224 I e aotNan1.NW_018500483v1 1952490 59 + 11732439 I e cebCap1.NW_016107870v1 391790 73 + 1231380 I e saiBol1.JH378156 15545201 0 + 16356641 C a score=25384.000000 s hg38.chr20_KI270871v1_alt 28889 4 + 58661 GCCA s panTro5.chr20 65598599 4 + 66533130 GCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366928 4 + 62195757 GCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778187 4 - 1017659 GCCA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987176 4 - 92844088 GCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634698 4 + 96509753 GCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090273 4 - 16982598 GCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933617 4 - 3785965 GCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605095 4 - 90373283 GCTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481474 4 + 6149316 GCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714226 4 - 5823884 GCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424752 4 + 159171411 GCTG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1952549 4 + 11732439 GCCA i aotNan1.NW_018500483v1 I 59 C 0 s otoGar3.GL873542 22168641 3 + 22939663 GCA- i otoGar3.GL873542 I 14 C 0 s mm10.chr2 181111834 4 + 182113224 GTCA i mm10.chr2 I 1750 C 0 s dasNov3.JH567899 115700 3 + 555560 -CCG i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e cebCap1.NW_016107870v1 391790 73 + 1231380 I e canFam3.chr24 47086833 0 + 47698779 C e saiBol1.JH378156 15545201 0 + 16356641 C a score=65072.000000 s hg38.chr20_KI270871v1_alt 28893 7 + 58661 TCATGAC s panTro5.chr20 65598603 7 + 66533130 TCATGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366932 7 + 62195757 TCATGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778191 7 - 1017659 TCATGAC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987180 7 - 92844088 TCATGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634702 7 + 96509753 TCATGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090277 7 - 16982598 TCATGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933621 7 - 3785965 TCATGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605099 7 - 90373283 TCATGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481478 7 + 6149316 TCATGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714230 7 - 5823884 TCATAAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424756 7 + 159171411 TCATGAC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 391863 7 + 1231380 TCACGAC i cebCap1.NW_016107870v1 I 73 C 0 s aotNan1.NW_018500483v1 1952553 7 + 11732439 TCATGAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168644 7 + 22939663 TCATGGC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181111838 7 + 182113224 TTATGTC i mm10.chr2 C 0 C 0 s dasNov3.JH567899 115703 3 + 555560 TCA---- i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e canFam3.chr24 47086833 0 + 47698779 C e saiBol1.JH378156 15545201 0 + 16356641 C a score=530166.000000 s hg38.chr20_KI270871v1_alt 28900 51 + 58661 CACGGGCAGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCAGGCT-----CAGCC s panTro5.chr20 65598610 51 + 66533130 CACGGGCAGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCAGGCT-----CAGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366939 51 + 62195757 CACGGGCAGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCAGGCT-----CAGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778198 51 - 1017659 CACGGGCAGCCAGCAGGTGGCCCCAAAGAGATGTACGGAGCAGGCT-----CAGCC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987187 51 - 92844088 CACGGGCGGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCTGGCT-----CAGCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634709 51 + 96509753 CACGGGCGGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCTGGCT-----CAGCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090284 51 - 16982598 CACGGGCGGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCCGGCT-----CAGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933628 51 - 3785965 CACGGGCGGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCTGGCT-----CAGCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605106 51 - 90373283 GACGGGCAGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCTGGCT-----CAGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481485 51 + 6149316 CACGGGCGGCCAGCAGGTGGCCCCAAAGAGATGTATGGAGCCGGCT-----CAGCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714237 51 - 5823884 CATGGGTGGCCAGTAGGTGGCCCCAAAGAAATGTATGGAGCCGGCT-----CAGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424763 51 + 159171411 CACAGGCGGCCAGCAGGTGGCCCCAAAGAGTCGTATGGAGCCGGCT-----CAGCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545201 56 + 16356641 CACAGACGGCCAGCAGGTGGCCCCAAAGAGACACACGGAGCCGGCTCGGCCCGGCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 391870 51 + 1231380 CACAGGTGGCCAGCAGGTGGCCCCAAAGAGACGTATGCAGCCGGCT-----CAGCC i cebCap1.NW_016107870v1 C 0 I 72 s aotNan1.NW_018500483v1 1952560 51 + 11732439 CACAGGCGGCCAGCAGGTGGCCCCAAAGAGACGTATGGAGCCGGCT-----CAGCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168651 49 + 22939663 CATGGGAAGCCAGCAGGTGGCCCCAGAGAGACATATCCAGCCAGCT-----CTC-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181111845 39 + 182113224 CACAGCCAGCCACCAGGTGTCCTC------------CCACCCAGCC-----CAGCC i mm10.chr2 C 0 I 1 s canFam3.chr24 47086833 47 + 47698779 --TGAGTGGCCAGCAGGTGGCCCCAGAGAGACGCTCCAGGCAGGCG-----CCC-- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 115706 23 + 555560 ----------CAGCAGGTGG------------------GGCTGGCC-----TCGCC i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M a score=268103.000000 s hg38.chr20_KI270871v1_alt 28951 52 + 58661 AGTGAGAGCCTGGTC------CCAG---CACA-------GGGACAGGG-GTGTATC--------------------------------AG---------------CAGGGAA-------AGGG----- s panTro5.chr20 65598661 52 + 66533130 AGTGAGAGCCTGGTC------CCAG---CACA-------GGGACAGGG-GTGTATC--------------------------------AG---------------CAGGGAA-------AGGG----- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61366990 52 + 62195757 AGTGAGAGCCTGGTC------CCAG---CACA-------GGGACAGGG-GTGTATC--------------------------------AG---------------CAGGGAA-------AGGG----- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778249 52 - 1017659 AGTGAGAGCCTGGTC------CCAG---CACA-------GACACAGGG-GTGTATC--------------------------------AG---------------CAGGGAA-------AGGG----- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987238 75 - 92844088 AGCGACAGTCTGGTC------CCAG---CACA-------GTGACAAGG-GCACGTCCTCAG----TTGGTGGGCAGGTG-----GGACAG---------------CAGGGAA-------AGGG----- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634760 75 + 96509753 AGCGACAGTCTGGTC------CCAG---CACA-------GTGACAAGG-GCACGTCCTCAG----TTGGTGGGCAGGTG-----GGACAG---------------CAGGGAA-------AGGG----- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090335 75 - 16982598 AGCGACAGTCTGGTC------CCAG---CACA-------GTGACAAGG-GCACGTCCTCAG----TTGGTGGGCAGGTG-----GGACAG---------------CAGGGAA-------AGGG----- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933679 75 - 3785965 AGCGACAGTCTGGTC------CCAG---CACA-------GTGACAAGG-GCATGTCCTCAG----TTGGTGGGCAGGTG-----GGACAG---------------CAGGGAA-------AGGG----- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605157 75 - 90373283 AGTGACAGCCTGGTC------CCAG---CACA-------GTGACAGGG-GCATGTCCTCAG----CTGGTGGGCAGGTG-----GGACAG---------------CAGGGAA-------AGGG----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481536 75 + 6149316 AGCGACAGTCTGGTC------CCAG---CACA-------GTGACAAGG-GCACGTCCTCAG----TTGGTGGGCAGGTG-----GGAGAG---------------CAGGGAA-------AGGG----- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714288 75 - 5823884 AGCGACAGCCTGGTC------CCAG---CAAA-------GTGACAAGG-GCACGTCCTCAG----CCGGTGGACAGGTG-----GGACAG---------------CAGGGAA-------AGGG----- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424814 74 + 159171411 AGGGAGAGCCTGGT-------CCAG---CAAC-------CGGACAGGG-GTGTGTCCTCAG----CCAGCGGGCAGGCG-----GGACAG---------------CAGGGAG-------AGGA----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545257 74 + 16356641 CGGGAGAGGCTGGC-------CCAG---CAGT-------GGGACAGGG-GAGCGTCCTCAG----CCAGCAGGCAGGCG-----GGACGT---------------CAGGGAG-------AGGA----- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1952611 74 + 11732439 CGGGAGAGCCTGGT-------CCAG---CAAT-------GGGACAGGG-GTGCGTCCTCGG----CCAGCGGGCAGGCG-----GGACGG---------------CAGGGAG-------AGGA----- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168700 95 + 22939663 CGCGAG-GTCTCCTT------CTAGG-CCTTC-------TGGGCAGGGCGTGTGTCCTCAG---ATCAGAGGGCAGGGGCC---GGGCAGGGGAAAAGACCTCCTCAGGGAA-------GGGA----- i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181111885 89 + 182113224 AAAGACAGCTAGGTCTCTCCTTCAGGTCCCAA-------GGGGCATGGTATATATCCTTAGGATAGCAGTAACCAGAGG-----ATGTGG---------------AGGAGAA-------AGGA----- i mm10.chr2 I 1 C 0 s canFam3.chr24 47086880 81 + 47698779 --------TCCTGTC------CCCG---TGCACGCCCAGGGGGCAGGG-GCACATC---------CTGGGGACCAGGTGCAGAGGGTGGG---------------CAGGGGAGGACCCCAGGG----- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 115729 60 + 555560 -------------------------------------AGGGGGCGGGG-GTCCTTTCCAGG---CCCCGGGGTGGGGGG-----GGAGGG---------------CGGGGCA-------GGCGCAGGT i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e cebCap1.NW_016107870v1 391921 72 + 1231380 I a score=2145385.000000 s hg38.chr20_KI270871v1_alt 29003 153 + 58661 --------AAAACCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAAAGGAAGCCGATGTACCAGGCAGTGACCAGCTCCTG s panTro5.chr20 65598713 153 + 66533130 --------AAAACCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAAAGGAAGCCGATGTACCAGGCAGTGACCAGCTCCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367042 153 + 62195757 --------AAAACCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAAAGGAAGCCGATGTACCAGGCAGTGACCAGCTCCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778301 153 - 1017659 --------AAAACCC-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAAAGGAAGCCGATGTACCAGGCAGTGACCAGCTCCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987313 153 - 92844088 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCTGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634835 153 + 96509753 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCTGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090410 153 - 16982598 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCTGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933754 153 - 3785965 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCTGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605232 153 - 90373283 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCCGCATAGGTGTCAAAGTGGTCATTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGAGGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481611 153 + 6149316 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCTGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTACACCAGGAACGACGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCAGTGACCAGCTCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714363 153 - 5823884 --------AAAGCCA-------------------------------------C----------AATGACCACAACTCACCAGGCCCCACCAGAGTGCATCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCTGCCAAGTATACCAGGAACGAGGCCAGGATGAGACAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57424888 153 + 159171411 --------AAGGCCA-------------------------------------C----------AAGGCCCACGACTCACCAGGCCCCACCAGAGTGCGTCCGCGTAAGTGTCAAAGTGGTCGTTCTCCCCCTTCTCCGCCAAATACACCAGGAACGAGGCCAGGATAAGGCAGAGGAAGCCAATGTACCAGGCGGTGACCAGCTCCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545331 153 + 16356641 --------AGAGCCG-------------------------------------C----------AAGGCCCATGACTCACCAGGCCCCACCAGAGCGCGTCCGCGTAGGTATCAAAGTGGTCGTTCTCCCCCTTCTCCGCCAAGTACACCAGGAACGAGGCCAGGATGAGGCAGAGGAAGCCGATGTACCAGGCAGTGACCAGCTCCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 391993 153 + 1231380 --------AAAGCCA-------------------------------------C----------AAGGCCCACGACTCACCAGGCCCCACCAGAGTGCGTCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCCGCCAAGTACACCAGGAACGAGGCCAGGATGAGGCAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i cebCap1.NW_016107870v1 I 72 C 0 s aotNan1.NW_018500483v1 1952685 152 + 11732439 --------AAAGCCA-------------------------------------C----------AGGG-CCACGACTCACCAGGCCCCACCAGAGCGCGTCCGCGTAGGTGTCAAAGTGGTCGTTCTCCCCCTTCTCAGCCAAGTACACCAGGAACGAGGCCAGGATGAGGCAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168797 153 + 22939663 --------CTGACCC-------------------------------------T----------GAGGACCAGTACTCACCAGGCCCCACCACAGTGCATCTGCATAGGTATCGAAGTGGTCGTTCTCGCCTTTCTCAGCCAAGTACACCAGAAAGGAGGCCAAGATGAGGCAAAGGAAACCTATGTACCAGGCAGTGACCAGTTCCTG i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181111974 154 + 182113224 --------ATGGTGA------------------------------------CC----------AGTGACCAGGACTTACCAGACCCCACCAGAGTGCATCTGCGTAGGTGTCAAAGTGGTCATTCTCACCCTTTTCTGCCAAGTACACCAGAAATGAGGCCAGGATGAGGCAGAGGAAGCCAATGTACCAGGCAGTCACCAGCTCCTG i mm10.chr2 C 0 C 0 s canFam3.chr24 47086961 190 + 47698779 --------GAGGCCATGCCAGGCGAGCGCGTCCCAGGGAAGGAGCATGAGCCC----------AGCGGCCAGGACTCACCAGGCCCCACCACAGGGCGTCGGCGTAGGTGTCGAAGTGGTCATTCTCCCCCTTCTCCGCCAAGTACACCAGGAACGAGGCCAGGATGAGGCAGAGGAAGCCGATGTACCAGGCAGTCACCAGCTCCTG i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 115789 171 + 555560 GGCGCCAGGTGGCCA-------------------------------------CAGCTGGGGCAAAGGCGCCCGACTCACCAGGCCCCACCAGAGGGCGTCTGCGTAGGTGTCGAAGTGGTCGTTCTCGCCTTTCTCGGCCAAGTACACCAGGAACGAGGCAAGGATGAGGCAGAGGAAGCCGATGTACCAGGCGGTGACCAGCTCCTG i dasNov3.JH567899 C 0 I 421 e nomLeu3.chr13 109266825 2024 - 110113093 M a score=76321.000000 s hg38.chr20_KI270871v1_alt 29156 12 + 58661 -AGAGGCAGA--CGG- s panTro5.chr20 65598866 12 + 66533130 -AGAGGCAGA--CGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367195 12 + 62195757 -AGAGGCAGA--CGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778454 12 - 1017659 -AGAGGCAGA--CGG- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987466 12 - 92844088 -AGAGGTAGA--AGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95634988 12 + 96509753 -AGAGGTAGA--AGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090563 12 - 16982598 -AGAGGTAGA--AGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933907 12 - 3785965 -AGAGATAGA--AGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605385 12 - 90373283 -AGAGGTAGA--AGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481764 12 + 6149316 -AGAGGTAGA--AGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714516 12 - 5823884 -AGAGGTAGA--TGG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425041 12 + 159171411 -CCAGGCAGA--TGG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545484 12 + 16356641 -CCAGGCAGA--GGG- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392146 12 + 1231380 -CCAGGCAGA--GGG- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1952837 12 + 11732439 -TCAGGCAGA--CGG- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168950 12 + 22939663 -CCAAACAAG--AGG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112128 13 + 182113224 CAAAGGCAGG--AAG- i mm10.chr2 C 0 I 1 s canFam3.chr24 47087151 15 + 47698779 -GAAGACACGCTCGGT i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I a score=3922.000000 s hg38.chr20_KI270871v1_alt 29168 2 + 58661 ca s panTro5.chr20 65598878 2 + 66533130 ca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367207 2 + 62195757 ca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778466 2 - 1017659 ca i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987478 2 - 92844088 Ta i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635000 2 + 96509753 Ta i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090575 2 - 16982598 Ta i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933919 2 - 3785965 Ta i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605397 2 - 90373283 Ta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481776 2 + 6149316 TA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714528 2 - 5823884 TA i colAng1.NW_012114444v1 C 0 C 0 s cebCap1.NW_016107870v1 392158 2 + 1231380 CA i cebCap1.NW_016107870v1 C 0 I 6 s aotNan1.NW_018500483v1 1952849 2 + 11732439 CA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168962 1 + 22939663 -G i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181112142 1 + 182113224 C- i mm10.chr2 I 1 C 0 s canFam3.chr24 47087166 2 + 47698779 CA i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=62503.000000 s hg38.chr20_KI270871v1_alt 29170 10 + 58661 ccaccatcat s panTro5.chr20 65598880 10 + 66533130 ccaccatcat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367209 10 + 62195757 ccaccatcat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778468 10 - 1017659 ccaccatcat i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987480 10 - 92844088 ccaccatcat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635002 10 + 96509753 ccaccatcat i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090577 10 - 16982598 ccaccatcat i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933921 10 - 3785965 ccaccatcat i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605399 10 - 90373283 ccaccatcat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481778 10 + 6149316 CCACCATCGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714530 10 - 5823884 Ccaccatcat i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1952851 10 + 11732439 TCGCCGTCAT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168964 9 + 22939663 -CCACATCAC i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181112143 10 + 182113224 ACGTCATTGT i mm10.chr2 C 0 I 13 s canFam3.chr24 47087168 10 + 47698779 CAGCCGCCCG i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e cebCap1.NW_016107870v1 392160 6 + 1231380 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=17842.000000 s hg38.chr20_KI270871v1_alt 29180 5 + 58661 g---------acca s panTro5.chr20 65598890 5 + 66533130 g---------acca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367219 5 + 62195757 g---------acca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778478 14 - 1017659 gaccaccatcacca i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987490 5 - 92844088 c---------acca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635012 5 + 96509753 c---------acca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090587 5 - 16982598 c---------acca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933931 5 - 3785965 c---------acca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605409 5 - 90373283 c---------acca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481788 5 + 6149316 C---------ACCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714540 5 - 5823884 c---------acca i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1952861 5 + 11732439 C---------ACCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22168973 5 + 22939663 C---------ACCA i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47087178 5 + 47698779 ---------GCCCA i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e cebCap1.NW_016107870v1 392160 6 + 1231380 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=7800.000000 s hg38.chr20_KI270871v1_alt 29185 1 + 58661 c s panTro5.chr20 65598895 1 + 66533130 c i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367224 1 + 62195757 c i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778492 1 - 1017659 c i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987495 1 - 92844088 c i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635017 1 + 96509753 c i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090592 1 - 16982598 c i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933936 1 - 3785965 c i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605414 1 - 90373283 c i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481793 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714545 1 - 5823884 c i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22168978 1 + 22939663 C i otoGar3.GL873542 C 0 I 115 s canFam3.chr24 47087183 1 + 47698779 C i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=6600.000000 s hg38.chr20_KI270871v1_alt 29186 1 + 58661 c s panTro5.chr20 65598896 1 + 66533130 c i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367225 1 + 62195757 c i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778493 1 - 1017659 c i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987496 1 - 92844088 c i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635018 1 + 96509753 c i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090593 1 - 16982598 c i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933937 1 - 3785965 c i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605415 1 - 90373283 c i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481794 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4714546 1 - 5823884 c i colAng1.NW_012114444v1 C 0 C 0 s canFam3.chr24 47087184 1 + 47698779 C i canFam3.chr24 C 0 I 462 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e otoGar3.GL873542 22168979 115 + 22939663 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=5005.000000 s hg38.chr20_KI270871v1_alt 29187 1 + 58661 a s panTro5.chr20 65598897 1 + 66533130 a i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367226 1 + 62195757 a i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778494 1 - 1017659 a i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987497 1 - 92844088 a i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635019 1 + 96509753 a i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090594 1 - 16982598 a i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933938 1 - 3785965 a i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605416 1 - 90373283 a i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5481795 1 + 6149316 A i manLeu1.NW_012104365v1 C 0 M 1870 s colAng1.NW_012114444v1 4714547 1 - 5823884 a i colAng1.NW_012114444v1 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=4095.000000 s hg38.chr20_KI270871v1_alt 29188 1 + 58661 t s panTro5.chr20 65598898 1 + 66533130 t i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367227 1 + 62195757 t i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778495 1 - 1017659 t i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987498 1 - 92844088 t i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635020 1 + 96509753 t i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090595 1 - 16982598 t i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933939 1 - 3785965 t i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605417 1 - 90373283 t i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4714548 1 - 5823884 t i colAng1.NW_012114444v1 C 0 M 883 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=-6864.000000 s hg38.chr20_KI270871v1_alt 29189 3 + 58661 cac-- s panTro5.chr20 65598899 3 + 66533130 cac-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367228 3 + 62195757 cac-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778496 3 - 1017659 cac-- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91987499 3 - 92844088 --cac i rheMac8.chr10 C 0 I 731 s macFas5.chr10 95635021 2 + 96509753 --ca- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090596 3 - 16982598 --cac i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2933940 2 - 3785965 --ca- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605418 2 - 90373283 --ca- i chlSab2.chr2 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M a score=2769.000000 s hg38.chr20_KI270871v1_alt 29192 6 + 58661 cagaag s panTro5.chr20 65598902 6 + 66533130 cataag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367231 6 + 62195757 cataag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778499 6 - 1017659 cataag i gorGor5.CYUI01015750v1 C 0 I 6 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e chlSab2.chr2 89605420 0 - 90373283 C e cerAty1.NW_012001373v1 2933942 0 - 3785965 C e macNem1.NW_012014244v1 16090599 0 - 16982598 C e macFas5.chr10 95635023 0 + 96509753 C e rheMac8.chr10 91987502 731 - 92844088 I a score=51399.000000 s hg38.chr20_KI270871v1_alt 29198 38 + 58661 catcaccat---caccaccaccaacaccaccaccatcacat s panTro5.chr20 65598908 41 + 66533130 catcaccatcaccaccaccaccaccaccaccaccatcacat i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778511 41 - 1017659 caccaccaccaccaccatcaccaccaccaccaccatcacat i gorGor5.CYUI01015750v1 I 6 C 0 s rheMac8.chr10 91988233 36 - 92844088 catcaccac---cgccaccaccatcaccaccatcaccac-- i rheMac8.chr10 I 731 C 0 s macFas5.chr10 95635023 36 + 96509753 catcaccat---cactaccatcatcaccaccaccaccac-- i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2933942 36 - 3785965 catcaccat---cactaccatcattaccaccaccaccac-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605420 36 - 90373283 catcaccat---cactaccaccatcaccaccaccaccac-- i chlSab2.chr2 C 0 C 0 e nomLeu3.chr13 109266825 2024 - 110113093 M e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C a score=137876.000000 s hg38.chr20_KI270871v1_alt 29236 90 + 58661 caacaccatgaccaccatcaccaccaccaaaaccatcaccaccatcac-caccaccaccatcaccatcaccac-----caccaccaccaccatcac------ s panTro5.chr20 65598949 84 + 66533130 catcaccatcaacaccatgaccatc------accatcaccaccatcac-aaccaccaaaaccatcaccaccac-----caccaccatcaccagcac------ i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778552 87 - 1017659 catcaccatcaacaccatgaccaccatc---accatcaccaccatcac-caccaccaaaaccatcaccaccac-----caccaccaccaccaccat------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109268855 85 - 110113093 catcaccatcatcaccatcaccacc------atcatcaccaccatcactcatcaccatcatcaccatcaccat-----catcaccaccatcatcac------ i nomLeu3.chr13 M 2024 C 0 s rheMac8.chr10 91988269 90 - 92844088 cgccaccaccaccaccatcaccacc------accatcactatcaccac-tgccaccaccaccaccaccaccac-----caccgccatccccacctccgccat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635059 90 + 96509753 caccaccaccatcaccatcaccacc------accaccaccaccaccat-caccaccatcaccaccaccgccat-----caccgccaccaccgccaccgccac i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2933978 94 - 3785965 catcatcaccaccaccatcaccacc------accaccaccaccatc-t-catcaccatcaccaccaccaccacaccgacaccaccaccaccaccaccaccac i cerAty1.NW_012001373v1 C 0 I 1053 s chlSab2.chr2 89605456 87 - 90373283 caccagcaccaccaccaccagcacc------accagcaccaccaccac-catcaccaccaccatcaccatcag-----caccaccaccatcaccaccag--- i chlSab2.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C a score=10122.000000 s hg38.chr20_KI270871v1_alt 29326 5 + 58661 cacca s panTro5.chr20 65599033 5 + 66533130 cacca i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 778639 5 - 1017659 cacca i gorGor5.CYUI01015750v1 C 0 I 503 s nomLeu3.chr13 109268940 5 - 110113093 cacca i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988359 5 - 92844088 cacca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635149 5 + 96509753 cacca i macFas5.chr10 C 0 C 0 s chlSab2.chr2 89605543 5 - 90373283 cacca i chlSab2.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C a score=22986.000000 s hg38.chr20_KI270871v1_alt 29331 19 + 58661 tca---------------------------------ccaccatcaccaccac s panTro5.chr20 65599038 19 + 66533130 tca---------------------------------ccaccatcaccatcac i panTro5.chr20 C 0 M 3751 s gorGor5.CYUI01015750v1 779147 19 - 1017659 tca---------------------------------ccaccaccaccaccaa i gorGor5.CYUI01015750v1 I 503 C 0 s nomLeu3.chr13 109268945 19 - 110113093 tca---------------------------------tcaccatcaccatcat i nomLeu3.chr13 C 0 I 1 s rheMac8.chr10 91988364 19 - 92844088 tca---------------------------------ccaccatcactatcac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635154 52 + 96509753 tcactgctgccaccaccgccactgccaccactgccgccgccatcaccaccac i macFas5.chr10 C 0 C 0 s chlSab2.chr2 89605548 19 - 90373283 tca---------------------------------ccaccaccaccaccac i chlSab2.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C a score=78675.000000 s hg38.chr20_KI270871v1_alt 29350 91 + 58661 acaccatcaccacatca-catcaccatcaccaccatcatcaccaggatcaccaggaccatcatcaccgccaccatcaccattatcaccacca s gorGor5.CYUI01015750v1 779166 86 - 1017659 acaccaccacca--tca-catcatcaccatcaacaccatgaccaccatcacca---tcaccatcaccaccaccatcaccatcatcaccacca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109268965 85 - 110113093 --accaccatca--tcaccatcaccatcaccatcatcaccaccatcatcacca---ccatcatcaccaccatcatcaccatcaccatcacca i nomLeu3.chr13 I 1 C 0 s rheMac8.chr10 91988383 83 - 92844088 ----caccacca--tcaccaccaccaccaccatcgccaccaccaccatcactg---ccaccagcaccaccaccaccaccaccatcaccatca i rheMac8.chr10 C 0 I 6 s macFas5.chr10 95635206 83 + 96509753 ----caccacca--tcaccaccatcaccatcaccaccatcaccactaccacca---ccaccaccaccatcaccaccaccatcaccaccacca i macFas5.chr10 C 0 I 6 s chlSab2.chr2 89605567 83 - 90373283 ----caccatca--ccatcagcaccaccaccatcaccaccagcaccatcacca---ccaccaccaccaccaccatcaccatcagcaccacca i chlSab2.chr2 C 0 I 701 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C e panTro5.chr20 65599057 3751 + 66533130 M a score=13239.000000 s hg38.chr20_KI270871v1_alt 29441 36 + 58661 ---ccaccatcaccatcaccaccat---cagacaaacaaaag s gorGor5.CYUI01015750v1 779252 34 - 1017659 ---ccaccaccaccatcaccatcat---ca--ccatcaccat i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269050 24 - 110113093 ---ccatcatcaccatcaccatcat---ca------------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988472 37 - 92844088 ccaccgccatcaccaccaccaccac---ca--ccgccaccac i rheMac8.chr10 I 6 C 0 s macFas5.chr10 95635295 40 + 96509753 ccaccaccaccaccaccatcaccaccaaca--ccttcaccac i macFas5.chr10 I 6 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e chlSab2.chr2 89605650 701 - 90373283 I e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C e panTro5.chr20 65599057 3751 + 66533130 M a score=91964.000000 s hg38.chr20_KI270871v1_alt 29477 94 + 58661 caccatcatcaccaccatcatcaccaccaccatcaccatcaccaccatcaccatcaccaccatcatcaccatcaccatcaccatcaccaccacc s panTro5.chr20 65602840 94 + 66533130 caccaccatcaccatcaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccatcaccaccaccaccaccaccaccaccaccacc i panTro5.chr20 M 3751 C 0 s gorGor5.CYUI01015750v1 779286 93 - 1017659 caccattatcaccaccaccatcaccatcaccacaaccatcaccaccatcaccaccaccaccaccaccacga-caccaccaccatcaccatcacc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269074 87 - 110113093 --ccatcatcaccatcaccaccaccatcac----atcatcaccaccaccaccaccatcaccaccatcatca-catcaccaccatcatcaccacc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988509 94 - 92844088 caccaccgccaccaccaccaccaccgccatcaccgccatcactgccatcaccacctccaccgccatcaccaccgccaccaccaccaccaccgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635335 94 + 96509753 catcaccaccaacaccaccatcaccaccaacaccaccatcatcatcatcaccatcaccaccatcatcatcaccatcatcatcatcaccatcaac i macFas5.chr10 C 0 I 15 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e chlSab2.chr2 89605650 701 - 90373283 I e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e macNem1.NW_012014244v1 16090599 0 - 16982598 C e panPan2.chr20 61367237 0 + 62195757 C a score=21468.000000 s hg38.chr20_KI270871v1_alt 29571 14 + 58661 atcaccatcaccac s panTro5.chr20 65602934 14 + 66533130 accaccaccaccac i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779379 14 - 1017659 atcaccaccatcac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269161 14 - 110113093 atcaccatcaccac i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988603 14 - 92844088 atcaccaccgccac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95635444 14 + 96509753 atcatcatgaccac i macFas5.chr10 I 15 C 0 s macNem1.NW_012014244v1 16090599 14 - 16982598 atcaccatcactac i macNem1.NW_012014244v1 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e colAng1.NW_012114444v1 4714549 883 - 5823884 M e chlSab2.chr2 89605650 701 - 90373283 I e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e panPan2.chr20 61367237 0 + 62195757 C a score=20872.000000 s hg38.chr20_KI270871v1_alt 29585 12 + 58661 catcac--caccat s panTro5.chr20 65602948 12 + 66533130 caccac--caccac i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779393 10 - 1017659 caccac--cacc-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269175 14 - 110113093 catcacatcatcac i nomLeu3.chr13 C 0 I 2 s rheMac8.chr10 91988617 12 - 92844088 catcac--caccac i rheMac8.chr10 C 0 I 12 s macFas5.chr10 95635458 12 + 96509753 catcac--caccat i macFas5.chr10 C 0 I 2888 s macNem1.NW_012014244v1 16090613 12 - 16982598 catcac--caccac i macNem1.NW_012014244v1 C 0 C 0 s colAng1.NW_012114444v1 4715451 12 - 5823884 CATcac--caccac i colAng1.NW_012114444v1 M 883 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e chlSab2.chr2 89605650 701 - 90373283 I e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e panPan2.chr20 61367237 0 + 62195757 C a score=75727.000000 s hg38.chr20_KI270871v1_alt 29597 42 + 58661 catcaccaccaccatcaccatcac-------caccaccacgatcaccac s panTro5.chr20 65602960 42 + 66533130 caccaccaccaccaccaccaccac-------caccaccaccaccaccac i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779403 39 - 1017659 ---catcaccattatcaccaccac-------caccatcaccatcaccac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269191 42 - 110113093 caccatcaccacaaccaccatcac-------catcaccaccaccaccac i nomLeu3.chr13 I 2 C 0 s rheMac8.chr10 91988641 39 - 92844088 ---catcaccaccaccaccaccat-------cgccatcaccaccaccac i rheMac8.chr10 I 12 C 0 s macFas5.chr10 95638358 39 + 96509753 ---catcaccaccaccaccaccat-------cgccatcaccaccaccac i macFas5.chr10 I 2888 C 0 s macNem1.NW_012014244v1 16090625 46 - 16982598 ---caccaccaccaccaccgccatcaccagccaccatcaccaccaccac i macNem1.NW_012014244v1 C 0 C 0 s colAng1.NW_012114444v1 4715463 44 - 5823884 ---caccaccaccatcaccaccatcacca--ccacatcaccatcaccac i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e chlSab2.chr2 89605650 701 - 90373283 I e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I e panPan2.chr20 61367237 0 + 62195757 C a score=9176.000000 s hg38.chr20_KI270871v1_alt 29639 3 + 58661 cat s panTro5.chr20 65603002 3 + 66533130 cat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367237 3 + 62195757 cat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779442 3 - 1017659 cat i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269233 3 - 110113093 cat i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988680 3 - 92844088 cat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638397 3 + 96509753 cat i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090671 3 - 16982598 cac i macNem1.NW_012014244v1 C 0 C 0 s colAng1.NW_012114444v1 4715507 3 - 5823884 cat i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e chlSab2.chr2 89605650 701 - 90373283 I e cerAty1.NW_012001373v1 2934072 1053 - 3785965 I a score=80155.000000 s hg38.chr20_KI270871v1_alt 29642 24 + 58661 caccatcac---caccaccaccaccat s panTro5.chr20 65603005 24 + 66533130 caccatcac---caccaccaccaccac i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367240 24 + 62195757 caccatcac---caccaccaccaccac i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779445 27 - 1017659 caccatcaccatcatcaccaccatcac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269236 24 - 110113093 catcatcac---catcaccatcatcat i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988683 24 - 92844088 caccatcat---caccaccaccaccat i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638400 24 + 96509753 caccatcat---caccaccaccaccat i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090674 24 - 16982598 catcgccat---caccaccaccaccat i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935125 24 - 3785965 CATCGCCAT---caccaccaccaccat i cerAty1.NW_012001373v1 I 1053 C 0 s colAng1.NW_012114444v1 4715510 24 - 5823884 cagcatcac---caccaccaccaccat i colAng1.NW_012114444v1 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e manLeu1.NW_012104365v1 5481796 1870 + 6149316 M e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e chlSab2.chr2 89605650 701 - 90373283 I a score=76828.000000 s hg38.chr20_KI270871v1_alt 29666 17 + 58661 caccatcatcaccatca s panTro5.chr20 65603029 17 + 66533130 caccatcaccatcatca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367264 17 + 62195757 caccatcaccatcatca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779472 17 - 1017659 caccatcaccaccatca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269260 17 - 110113093 caccatcatcaccatca i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988707 17 - 92844088 caccatcatcatcacca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638424 17 + 96509753 caccatcatcatcacca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090698 17 - 16982598 caccatcatcatcacca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935149 17 - 3785965 caccatcatcatcacca i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5483666 17 + 6149316 caccatcaccatcacca i manLeu1.NW_012104365v1 M 1870 C 0 s colAng1.NW_012114444v1 4715534 17 - 5823884 caccaccaccaccatca i colAng1.NW_012114444v1 C 0 I 2 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C e chlSab2.chr2 89605650 701 - 90373283 I a score=179649.000000 s hg38.chr20_KI270871v1_alt 29683 43 + 58661 ccaccaccaccaccatcactaccaccatcaccaccatcaccct s panTro5.chr20 65603046 43 + 66533130 ccatcaccaccaccatcactaccaccatcaccaccatcaccct i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367281 43 + 62195757 ccatcaccaccaccatcactaccaccatcaccaccatcaccct i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779489 43 - 1017659 ccaccaccatcaccaccaccaccaccatcactaccatcatcac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269277 43 - 110113093 ccaccatcatcaccatcgccatcatcatcaccaccaccatcat i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988724 43 - 92844088 ccaccaccatcaccaccatcaccaccaccaccaccatcaccac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638441 40 + 96509753 ccaccaccatcaccaccat---caccaccaccaccatcaccac i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090715 40 - 16982598 ccaccaccatcaccaccat---caccaccaccaccatcaccac i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935166 31 - 3785965 ccaccaccat------------caccaccaccaccatcaccac i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606351 43 - 90373283 CCATcaccaccaccatcgccatcaccaccaccaccatcaccac i chlSab2.chr2 I 701 C 0 s manLeu1.NW_012104365v1 5483683 43 + 6149316 ccaccaccatcaccaccaccatcaccaccaccaccatcaccac i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715553 39 - 5823884 acatcaccaccaccaccac---caccaccatca-catcaccac i colAng1.NW_012114444v1 I 2 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e saiBol1.JH378156 15545496 0 + 16356641 C e calJac3.chr5 57425053 0 + 159171411 C a score=47080.000000 s hg38.chr20_KI270871v1_alt 29726 8 + 58661 cac--cacca s panTro5.chr20 65603089 8 + 66533130 cac--cacca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367324 8 + 62195757 cac--cacca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779532 8 - 1017659 cat--caccc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269320 10 - 110113093 cacatcacca i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988767 8 - 92844088 cac--tacca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638481 8 + 96509753 cac--tacca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090755 8 - 16982598 cac--tacca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935197 8 - 3785965 cac--tacca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606394 8 - 90373283 cac--cacca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483726 8 + 6149316 cac--tacca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715592 8 - 5823884 cac--cacca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425053 8 + 159171411 CAT--CGCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545496 8 + 16356641 CAT--CACCG i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e cebCap1.NW_016107870v1 392160 6 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I a score=61968.000000 s hg38.chr20_KI270871v1_alt 29734 9 + 58661 tcaccaccC s panTro5.chr20 65603097 9 + 66533130 ccaccaccC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367332 9 + 62195757 ccaccaccc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779540 9 - 1017659 tcaccaCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269330 9 - 110113093 tcaccatcc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988775 9 - 92844088 TCCCCACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638489 9 + 96509753 tccccaccc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090763 9 - 16982598 tccccaccc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935205 9 - 3785965 TCCCCACCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606402 9 - 90373283 tcaccaccT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483734 9 + 6149316 tcaccaccc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715600 9 - 5823884 TCATCACCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425061 9 + 159171411 TCACCACCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545504 9 + 16356641 TCACCACGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392166 9 + 1231380 TCACCACCA i cebCap1.NW_016107870v1 I 6 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e aotNan1.NW_018500483v1 1952866 0 + 11732439 C e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I a score=306154.000000 s hg38.chr20_KI270871v1_alt 29743 30 + 58661 GCCACCTGCCTCCAGGAGCACTGCAGCCTC s panTro5.chr20 65603106 30 + 66533130 GCCACCTGCCTCCAGGAGCACTGCAGCCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367341 30 + 62195757 gccacctgcctccAGGAGCACTGCAGCCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779549 30 - 1017659 GCCACCTGCCTCCAGGAGCACTGCAGCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269339 30 - 110113093 gccaccTGCCTCCAGGAGCACTGCAGCCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988784 30 - 92844088 GCCACCTGCCTCCAGGAGCACTGCAGCCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638498 30 + 96509753 gccaccTGCCTCCAGGAGCACTGCAGCCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090772 30 - 16982598 gccaccTGCCTCCAGGAGCACTGCAGCCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935214 30 - 3785965 GCCACCTGCCTCCAGGAGCACTGCAGCCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606411 30 - 90373283 GCCACCTGCCTCCAGGAGCACTGCAGCCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483743 30 + 6149316 gccaccTGCCTCCAGGAGCACTGCAGCCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715609 30 - 5823884 GCCACCTGCCTCCAGGAGCACTGCAGCCTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425070 29 + 159171411 GCCACCTGCCTCC-GGAGCACTGCAGCCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545513 28 + 16356641 GCCGCC-GTCTCC-GGAGCACTGCAGCCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392175 29 + 1231380 GCCGCCCGCCTCC-GGAGCACTGCAGCCTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1952866 29 + 11732439 GCCACCTGCCTCC-GGAGCACTGCAGCCTC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e mm10.chr2 181112153 13 + 182113224 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I a score=374932.000000 s hg38.chr20_KI270871v1_alt 29773 48 + 58661 GCCAGTCAGCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATAGGGGCTGGA s panTro5.chr20 65603136 48 + 66533130 GCCAGTCAGCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATAGGGGCTGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367371 48 + 62195757 GCCAGTCAGCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATAGGGGCTGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779579 48 - 1017659 GCCAGTCAGCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269369 44 - 110113093 ACCGGCCAGCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGC---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988814 48 - 92844088 GCCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638528 48 + 96509753 GCCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090802 48 - 16982598 GCCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935244 48 - 3785965 GCCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606441 48 - 90373283 ACCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i chlSab2.chr2 C 0 I 5 s manLeu1.NW_012104365v1 5483773 48 + 6149316 GCCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715639 48 - 5823884 GCCAGCCATCCCACTTTGG--GCTCTGTCTCCA-------------GGGATATGGGGGCTGGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425099 41 + 159171411 GCC--CCAGCCTTCCCTGG--GCTTCATCTCCA-------------GGGATGT-GGGGC---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545541 42 + 16356641 GCC--CCGGCCTGCCCCGG--GCTTCGTCTCCA-------------GGGATGTGGGGGC---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392204 42 + 1231380 GCC--TCAGCCTGCCCTGG--GCTTCGTCTCCA-------------GGGATGTGGGGGC---- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1952895 41 + 11732439 GCC--CCAGCCTGCCCTGG--GCTTCGTCTCCA-------------GGGATGT-GGGGC---- i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181112166 59 + 182113224 GCCTGGAAGCCCAGCATGGGAGCCCTGCCCTCAACTGTGCAGCTCGGGGACTTGGAGGA---- i mm10.chr2 I 13 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I a score=6733.000000 s hg38.chr20_KI270871v1_alt 29821 12 + 58661 TGGA--CCCGTCTC s panTro5.chr20 65603184 12 + 66533130 TGGA--TCCCTCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367419 12 + 62195757 TGGA--TCCCTCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779627 12 - 1017659 TGGA--CCCCTCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269413 12 - 110113093 TGGA--CCCCTCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988862 5 - 92844088 -------CCCTT-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638576 5 + 96509753 -------CCCTT-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090850 5 - 16982598 -------CCCTT-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935292 5 - 3785965 -------CCCTT-- i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5483821 5 + 6149316 -------CCCTT-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715687 5 - 5823884 -------CCCTT-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425140 12 + 159171411 TGAA--CCCCTCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545583 12 + 16356641 TGAA--CCCCTCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392246 12 + 1231380 TGAA--CCCCTCTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1952936 12 + 11732439 TGAA--CCCCTCTC i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181112225 12 + 182113224 TGGAATCCCCTC-- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I e chlSab2.chr2 89606489 5 - 90373283 I a score=153380.000000 s hg38.chr20_KI270871v1_alt 29833 14 + 58661 CTGAGGCCAGCAGA s panTro5.chr20 65603196 14 + 66533130 CTGAGGCCAGCAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367431 14 + 62195757 CTGAGGCCAGCAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779639 14 - 1017659 CTGAGGCCAGCAAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269425 14 - 110113093 CTGAGGCCAGCAGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988867 14 - 92844088 CTGAGGCCAGTAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638581 14 + 96509753 CTGAGGCCAGTAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090855 14 - 16982598 CTGAGGCCAGTAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935297 14 - 3785965 CTGAGGCCAGTAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606494 14 - 90373283 CTGAGGCCAGCAGA i chlSab2.chr2 I 5 C 0 s manLeu1.NW_012104365v1 5483826 14 + 6149316 CTGAGGCCAGTAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715692 14 - 5823884 CTGAGGCCAGCAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425152 14 + 159171411 CTGAGGCCAGCAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545595 14 + 16356641 CCGAGGCCAGCAGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392258 14 + 1231380 CTGAGGCCAGCAGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1952948 14 + 11732439 CTGAGGCCAGCAGA i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181112237 13 + 182113224 CCGATGGCAGCAA- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22168979 115 + 22939663 I a score=67847.000000 s hg38.chr20_KI270871v1_alt 29847 5 + 58661 GGCTC s panTro5.chr20 65603210 5 + 66533130 GGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367445 5 + 62195757 GGCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779653 5 - 1017659 GGCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269439 5 - 110113093 GGCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988881 5 - 92844088 GGCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638595 5 + 96509753 GGCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090869 5 - 16982598 GGCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935311 5 - 3785965 GGCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606508 5 - 90373283 GGCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483840 5 + 6149316 GGCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715706 5 - 5823884 GGCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425166 5 + 159171411 GGCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545609 5 + 16356641 GGCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392272 5 + 1231380 GGCTC i cebCap1.NW_016107870v1 C 0 I 78 s aotNan1.NW_018500483v1 1952962 5 + 11732439 GGCTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169094 5 + 22939663 GGCTC i otoGar3.GL873542 I 115 C 0 s mm10.chr2 181112250 5 + 182113224 GGAAC i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I a score=211225.000000 s hg38.chr20_KI270871v1_alt 29852 27 + 58661 -------------CAC--GC-CAGGGTCGGTGGCAGGGCTGGC s panTro5.chr20 65603215 27 + 66533130 -------------CAC--AC-CAGGGTCGGTGGCAGGGCTGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367450 27 + 62195757 -------------CAC--AC-CAGGGTCGGTGGCAGGGCTGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779658 27 - 1017659 -------------CAC--GC-CAGGGTCGGTGGCAGGGCTGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269444 27 - 110113093 -------------CAC--GC-CAGGGTCCGTGGCAGGGCTGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988886 27 - 92844088 -------------CAC--GC-CAGAGTTGGTGGCAGGGCTGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638600 27 + 96509753 -------------CAC--GC-CAGAGTTGGTGGCAGGGCTGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090874 27 - 16982598 -------------CAC--AC-CAGAGTTGGTGGCAGGGCTGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935316 27 - 3785965 -------------CAC--GC-CAGGGTTAGTGGCAGGGCTGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606513 27 - 90373283 -------------CAT--GC-CAGGGTTGGTGGCAGGGCTGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483845 27 + 6149316 -------------CAC--GC-CAGGGTTGGTGGCAGGGCTGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715711 27 - 5823884 -------------CAC--GC-CAGGGTTGGTGGCAGGGCTGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425171 26 + 159171411 -------------CAC--A--CAGGGTCAGTGGCGGGGCTGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545614 10 + 16356641 -------------CAC--A--CAGGGT---------------- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1952967 26 + 11732439 -------------CAC--A--CGGGGTCAGCGGCAGGGCTGGC i aotNan1.NW_018500483v1 C 0 I 66 s otoGar3.GL873542 22169099 28 + 22939663 -------------CAT--GCACAGGGTCAGCAGGAGGGCTGGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112255 42 + 182113224 AACTTAGAGCAGACACTGGT-CAGGGATGGCAACAGAGCTTGT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e cebCap1.NW_016107870v1 392277 78 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I a score=513534.000000 s hg38.chr20_KI270871v1_alt 29879 80 + 58661 ACAGGGGAACCAGGAGGCGCCGCTGGCTTCACCATCTTAGCTACGGCAGCCCATT-CCCCTGAGCCTCCTGGCCTGGGCAA---------- s panTro5.chr20 65603242 80 + 66533130 ACAGGGGAACCAGGAGGCGCCGCTGGCTTCACCATCTTAGCTACGGCAGCCCATT-CCCCTGAGCCTCCTGGCCTGGGCAA---------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367477 80 + 62195757 ACAGGGGAACCAGGAGGCGCCGCTGGCTTCACCATCTTAGCTACGGCAGCCCATT-CCCCTGAGCCTCCTGGCCTGGGCAA---------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779685 80 - 1017659 ACAGGGGAACCAGGAGGTGCCGCTGGCTTCACCATCTTAGCTACAGCAGCCCATT-CTCCTGAGCCTCCTGGCCTGGGCAA---------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269471 80 - 110113093 ACAGGGGAACCAGGAGGGGCTGCTGGCTTCACCATCTTAGCTACAGCAGCCCATT-CCCCTGAGCCTCCTGGCCTGGGCAA---------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988913 80 - 92844088 ACAGGGGAACCTGCAGGGGCCACTGGCTTCACCATCTTAGCTACAGCAGCCCCTT-CCCCTGTGCTTCCTGGCCTGGGCAA---------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638627 80 + 96509753 ACAGGGGAACCTGCAGGGGCCACTGGCTTCACCATCTTAGCTACAGCAGCCCCTT-CCCCTGTGCTTCCTGGCCTGGGCAA---------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090901 80 - 16982598 ACAGGGGAACCTGCAGGGGCCACTGGCTTCACCATCTTAGCTACAGCAGCCCCTT-CCCCTGTGCTTCCTGGCCTGGGCAA---------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935343 80 - 3785965 ACAGGGGAACCTGCAGGGGCCACTGGCTTCACCATCTTAGCTACAGCAGCCCCTT-CCCCTGTGCCTCCTGGCCTGGGCAA---------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606540 80 - 90373283 ACAGGGGAACCCGGAGGGGCCACTGGCTTCACCATCTTAGCTACAGCAGCCCCTT-CCCCTGTGCCTCCTGGCCTGGGCAA---------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483872 80 + 6149316 ACAGGGGAACCTGCAGGGGCCACTGGCTTCACCATCTTAGCTACAGCAGCCCCTT-CCCCTGTGCCTCCTGGCCTGGGCAA---------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715738 80 - 5823884 AGAGGGGAACCCGGACGGGCCACTGGCTTCACCGTCTTAGCTACAGCAGCCCCTT-CCCCTGTGCCTCCTGGCCTGGGCAA---------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425197 66 + 159171411 -CAGGGGTACCCGGAGCAGCGGCCAGCTTCACTCTCGTAGCTGCTCCAGCCCCTG-CCCCTGTGCCTC----------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545624 59 + 16356641 -CAGGGGAACCCAGGGCAGCGGCCGGCATCAC-CTCGTAGCTGCACCAGCCCCTG-C------GCCTC----------------------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22169127 80 + 22939663 ACAGTAGCACAGGGAGGGGCTGCTGGCTTTGTGGGCCCAGCCTTGGCAGCCTATCACCCCTGCATCTC-AGCCCTGGGGAA---------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112297 77 + 182113224 CCTGGATAA--TGAAGTGACTGCCGGCTGTACAATGCAACTTTCAACTGACTATT-TC-----------AGACCTGGGAGAAGAGTATCAG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e aotNan1.NW_018500483v1 1952993 66 + 11732439 I e cebCap1.NW_016107870v1 392277 78 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I a score=40393.000000 s hg38.chr20_KI270871v1_alt 29959 4 + 58661 CAGT s panTro5.chr20 65603322 4 + 66533130 CAGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367557 4 + 62195757 CAGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779765 4 - 1017659 CAGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269551 4 - 110113093 CAGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988993 4 - 92844088 CAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638707 4 + 96509753 CAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090981 4 - 16982598 CAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935423 4 - 3785965 CAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606620 4 - 90373283 CAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483952 4 + 6149316 CAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715818 4 - 5823884 CAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425263 4 + 159171411 CAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545683 4 + 16356641 CAGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1953059 4 + 11732439 CAGT i aotNan1.NW_018500483v1 I 66 C 0 s otoGar3.GL873542 22169207 4 + 22939663 CTGC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112374 4 + 182113224 CAGT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e cebCap1.NW_016107870v1 392277 78 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I a score=1583564.000000 s hg38.chr20_KI270871v1_alt 29963 169 + 58661 --------GGCTCG---CATGGCCAGCCCACCGTGCCCTCCAGGG--TCAGTAGCGTCTATTCTGGCGGCCAGCAGGGCTGGAGAGTCTTGGGACTGTTGAGACCCTCCCCCAACCTCCCTGAGCCTCCGGGCA-CAGATGTGAAAAGGGTGCCCACTGCAGTCAGCAC-TCAAC-CCCC-------ACAGC s panTro5.chr20 65603326 169 + 66533130 --------GGCTCG---CATGGCCAGCCCACCGTGCCCTCCAGGG--TCAGTAGTGTCTATTCTGGCGGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAACCTCCCTGAGCCTCCGGGCA-CAGATGTGAAAAGGGTGCCCACTGCAGTCAGCAC-TCAAC-CCCT-------ACAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367561 169 + 62195757 --------GGCTCG---CATGGCCAGCCCACCGTGCCCTCCAGGG--TCAGTAGTGTCTATTCTGGCGGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAACCTCCCTGAGCCTCCGGGCA-CAGATGTGAAAAGGGTGCCCACTGCAGTCAGCAC-TCAAC-CCCT-------ACAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779769 169 - 1017659 --------GGCTCG---CATGGCCAGCCCACTGTGCCCTCCAGGG--TCAGTAGTGTCTATTCTGGCAGCCGGCAGGACTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAACCTCCCTGAGCCTCCAGGCA-CAGATGTGAAAAGGGTGCCCACTGCAGTCAACAC-TCAAC-CCCC-------ACAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269555 169 - 110113093 --------GGCTCG---CATGGCCGGCCCACCATGTCCTCCAGGG--TCAGCAGCATCTATTCTGGCAGCCAGCAGGGCTGGAGAATCTTGGGACTGCTGAGGCCCTCCCCCAACCTCTCTGAGCGTAAGGACA-CAGATGTGAAAAGGGTGCCCACTGCAGTCAGCAC-TGAAC-CCCC-------ACAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91988997 168 - 92844088 --------GGCTCG---CATGGCCGGCCCACCACTTCCTCCAGGG--TCAGCAGCGTCTATCCT-GCGGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAATCTCCCTGAGCCTCCAGGCA-CAGATGTGAAAAAGGTGACCACTGCAGTCAGCAT-TCAAC-CCCC-------ACAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95638711 168 + 96509753 --------GGCTCG---CATGGCCGGCCCACCACTTCCTCCAGGG--TCAGCAGCGTCTATCCT-GCGGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAATCTCCCTGAGCCTCCAGGCA-CAGATGTGAAAAAGGTGACCACTGCAGTCAGCAT-TCAAC-CCCC-------ACAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16090985 168 - 16982598 --------GGCTCG---CATGGCCGGCCCACCCCTTCCTCCAGGG--TCAGCAGCGTCTATCCT-GCGGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAATCTCCCTGAGCCTCCAGGCA-CAGACGTGAAAAAGGTGACCACTGCAGTCAGCAT-TCAAC-CCCC-------ACAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935427 169 - 3785965 --------GGCTCG---CATGGCCGGCCCACTACTTCCTCCAGGG--TCAGCAGCGTCTATTCTGGTGGCCAGCAGGGCTGGAGAATCTTGGGGCTGTTGAGACCCTCCCCCAATCTCCCTGGGCCTCCAGGCA-CAGATGTGAAAAAGGTGACCACTGCAGTCAGCAT-TCAAC-CCCC-------ACAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606624 169 - 90373283 --------AGCTCA---CATGGCTGGCCCACCACTTCCTATAGGG--TCAGCAGCATCTATTCTGGCAGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAATCTCTCTGAGCCTCCAGGCA-CAGATGTGAAAAGAGCGCCCACTGCAGTCAGCAC-TCAAC-CCCC-------ACAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5483956 169 + 6149316 --------AGCTCG---CATGGCTGGCCCACCACTTCCTCCAGGG--TCAGCAGCGTCTATTCTGGTGGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAATCTCCCTGAGCCTCCAGGCA-CAGATGTGAAAAAGGTGACCACTGCAGTCAGCAT-TCAAC-CCCC-------ACAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4715822 169 - 5823884 --------GGCTCG---CATGGCCGGCCCACCGCTTCCTCCAGGG--TCAGCAGTGTCTATTCTGGCAGCCAGCAGGGCTGGAGAATCTTGGGACTGTTGAGACCCTCCCCCAATCTCCCTGAGCCTCCAGGCA-CAGATGTGAAAAGGGTGCCCACTGCAGTCAGCAC-TCAAC-CCCC-------ACAGC i colAng1.NW_012114444v1 C 0 M 550 s calJac3.chr5 57425267 167 + 159171411 --------AGCTCG---CGTGGCTGGCCCGCCGTGTTCTCCAGGG--TCAGCAGTGTCTGTGCCAGTGGCTGGCGGAGCTGGAGAATCTCGGGACTGTGGAGACCCACCCTCGGCCTCTCTGAGCCTCAGGGCA-CAGATGTG-AAACGGTGCCCACTCCAGCCAACAC-CCAAC-CCC--------ATGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545687 167 + 16356641 --------GGCTCG---CACGGCCGGCCCGCCGTGTCCTCCAGGG--TCAGCAGCGTCTATGCCAGCGGCCGGCGGGGCTGGAGAATCTCGGGACTGTGGAGACCCTCCCCCAGCCTCCCTGAGCCTCACGGCG-CAGATGTG-AAAGGGTGCCCATTCCAGCCAGCAC-CCAAC-CCC--------ACAGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392355 167 + 1231380 --------GGCTCG---CACGGCCGGCCCGCCGTGTCCTCCAGGG--TCAGCAGCGTCTATGCCGGCGGCCGGCGGGGCTGGAGAATCTCAGGACTGTGGAGACCCTCCCCCAGCCTCCCTGAGCCTCAGGGCG-CAGATGTG-AAAGGGTGCCCACTCCAGCCAGCAC-CCAAC-CCC--------ACAGC i cebCap1.NW_016107870v1 I 78 C 0 s aotNan1.NW_018500483v1 1953063 167 + 11732439 --------GGCTCG---CGTGGCCAGCCCGCCGTGTCCTCCAGGG--TCAGCAGCATCTGTGCCGGCGGCCGGCAGGGCTGGAAAAGCTCGGGACTGTGGAGACCCTCCCCTAGCCTCCCTGAGCCTCAGGGCA-CAGATGTG-AAAGGGTGCCCACTCCAGCCAGCAC-CCAAC-TCC--------ACAGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169211 167 + 22939663 --------AGCT--------AACCAGCACCCAGCATTCACCCAGGTTTTGAGAGCAATTGCTCTAGTGGCCAA-AGGGCTAGACACTCTTGGAACTGTTCGGTCCCTCCC-CAACCTCCCTGAGCCCCAGGGGAGTAGTTGGAAGGAGGACACCCCCTCTAATCAGCATACCAATACCCT-------GCAGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112378 142 + 182113224 CCTTTAAAAACCCTGTCCATGGCTGGGGAAACACATACCCCACAG--CCAGCAG------------------------CTGGGG--TCCCAGCACTGTGGAGAT---------ATCCCCAAGAA----GGGGTA-CAGGTCCC-AACAGGCGTATACT-----CAGTTC-CCAAC-ACTCTGGGTGTGCAGT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I a score=1187009.000000 s hg38.chr20_KI270871v1_alt 30132 140 + 58661 ----GTCCAGGGAGGGA-GAGGGGCCACCGGGGGCTGACCCCTGCCCATTCTGCAGACAAAGCCACCACC-CTGCCAGGGCT--CAAG-AGGGAAGAAAATGGGGAGGGGGCCATTTGAGCAAATGAGCCCACCCGTGAGCAAGGTGGA s panTro5.chr20 65603495 140 + 66533130 ----ATCCAGGGAGGGA-GAGGGGCCACCGGGGGCTGACCCCTGCCCGTTCTGCAGACAAAGCCACCACC-CTGCCAGGGCT--CAAG-AGGGAAGAAAATGGGGAGGGGGCCGTTTAAGCAAATGAGCCCACCCCTGAGCAAGGTGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367730 140 + 62195757 ----GTCCAGGGAGGGA-GAGGGGCCACCGGGGGCTGACCCCTGCCCGTTCTGCAGACAAAGCCACCACC-CTGCCAGGGCT--CAAG-AGGGAAGAAAATGGGGAGGGGGCCGTTTAAGCAAATGAGCCCACCCCTGAGCAAGGTGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 779938 140 - 1017659 ----GTCCAGGGAGGGA-GAGGGGCCACCGGGGGCTGACCCCTGCCTGTTCTGCAGACAAAGCCACCACC-CTGCCAGGGCT--CAAG-AGGGAAGAAAATGGGGAGGGGGCCGTTTGAGCAAATGAGCCCACCCGTGAGCAAGGTGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269724 140 - 110113093 ----GTCCAGGGAGGGA-GAGGGGCCACCGGGGACTGACCCCTGCCTGTTCTGCAGACAAAGCCACCACC-CTGCCAGGGCT--CAAG-AGGGAAGAAAATGGGGAGGGGGCCATTTGAGCAAATAAGCCCACCCGTGACCAGGGTGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989165 139 - 92844088 ----ATCCAGGGAAGGA-AGGGGGCCACTGGGGGCTGACCCCTGCCTGTTCTGCAGCCAAAACCACCACC-CTGGCAGGGCT--CAAG-AGGGAAGAAAATGGGGA-AGGGCCGTTTGAGCAAATGAGCCCACCCATGAGCAGGGTGGA i rheMac8.chr10 C 0 I 54 s macFas5.chr10 95638879 139 + 96509753 ----ATCCAGGGAAGGA-AGGGGGCCACTGGGGGCTGACCCCTGCCTGTTCTGCAGCCAAAACCACCACC-CTGGCAGGGCT--CAAG-AGGGAAGAAAATGGGGA-AGGGCCGTTTGAGCAAATGAGCCCACCCGTGAGCAGGGTGGA i macFas5.chr10 C 0 I 54 s macNem1.NW_012014244v1 16091153 122 - 16982598 ----ATCCAGGGAAGGA-AGGGGGCCACTGGGGGCTGACCCCTGCCTGTTCTGCAGCCAAAACCACCACC-CTGGCAGGGCT--CAAG-AGGGAAGAAAATGGGGA-AGGGCCGTTTGAGCAAATGAGCCCA----------------- i macNem1.NW_012014244v1 C 0 I 22 s cerAty1.NW_012001373v1 2935596 139 - 3785965 ----ATCCAGGGAAGGA-AGGGGGCCACTGGGGGCTGACCCCTGCCTGTTCTGCAGCCAAAACCACCACC-CTGGCAGGGCT--CAAG-AGGGAAGAAAATGGGGA-GGGGCCGTTTGAGCAAATGAGCCCACCCGTGAGCAGGGTGGA i cerAty1.NW_012001373v1 C 0 I 50 s chlSab2.chr2 89606793 139 - 90373283 ----ATCCAGGGAGGGA-AGGGGGCCACTGGGGGCTGACCCCTGCCTGTTCTGCAGCCAAAACCACCACC-CTGGCAGGGCT--CAAG-AGGGAAGAAAATGCGGA-GGGTCCATTTGAGCAAATGAGCCCACCCGTGAGCAGGATGGA i chlSab2.chr2 C 0 I 49 s manLeu1.NW_012104365v1 5484125 139 + 6149316 ----ATCCAGGGAAGGA-AGGGGGCCACTGGGGGCTGACCCCTGCCTGTTCTGCAGCCAAAACCACCACC-CTGGCAGGGCT--CAAG-AGGGAAGAAAATGGGGA-GGGGCCGTTTGAGCAAATGAGCCCACCCGTGAGCAGGGTGGA i manLeu1.NW_012104365v1 C 0 I 228 s calJac3.chr5 57425434 137 + 159171411 ----ATCCAGGGAGAGA---GGGGCCCCCAGGGGCTGACCCCTGCCTGTTCTGCAGACAAAGCCACCACC-CGGCCAGGGCA--CAGG-GGGGAAGAAAATGGGGA-GGGGCCGTTTGAGCAAATAAGCCCACCCATGCGTAGGGTGGA i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15545854 135 + 16356641 ----GCCCA-GGAGGGA---GGGG-CCCCGGGGGCTGAGCCCTGCCCGTTCTGCAGACAAAGCCGCCCCC-CGGCCAGGGCG--CAGG-AGGGAAGAAAATGGGGA-GGGGCCGTTGGAGCAAATAAGCCCACCCCTTCGTAGGGTGGG i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 392522 137 + 1231380 ----ATCCAGGGAGGGA---GGGGCCCCCGGGGGCTGACCCCTGCCTGTTCTGCAGACAAAGCCACTCCC-CGTCCAGGGCG--CAGG-AGGGAAGAAAATGGGGA-GGGGCCGTTTGAGCAAATAAGCCCACCCATGCGTCGAGTGGA i cebCap1.NW_016107870v1 C 0 I 1 s aotNan1.NW_018500483v1 1953230 137 + 11732439 ----GTCCAAGGAGGGA---GGAGCCCCCGGGGGCTGACCCCTGCCTGTTCTGCAGACAAAGCCACCACC-CGGCCAGCGTG--CAGG-AGGGAAGAAAACGGGGA-GGGGCCGTTTGAGCAAATAAGCCCACCCATGCGTAGGGTGGA i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22169378 133 + 22939663 ----GTCCAGGGAGGGAGAAGGGACCCTTGGGGGCTGACACCTGCC---------ACCAAAGCCACTACCACTTCTATGGCT--CCAGCAGGTAGGAAAATAGGGA-GCAGCCATCTGGTCAAATAAGACCACCCATGAGCAGGGTGGA i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181112520 137 + 182113224 GCAGAGACAGGGAGAGA-CCAGACCTCTAGGGAGGTCAACTTCCCCAGAGCC-CAGTGCCTGCCCCCACA-AGACCATGGCTGACAAA-AGGGGGACAGGTAGGATAGAGAGCATTTGAGTCAGTGAGAACA--------TAAAGAGCA i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I e colAng1.NW_012114444v1 4715991 550 - 5823884 M a score=-36964.000000 s hg38.chr20_KI270871v1_alt 30272 2 + 58661 -GG s panTro5.chr20 65603635 2 + 66533130 -GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367870 2 + 62195757 -GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780078 2 - 1017659 -GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269864 2 - 110113093 -GG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989358 1 - 92844088 --A i rheMac8.chr10 I 54 C 0 s macFas5.chr10 95639072 1 + 96509753 --A i macFas5.chr10 I 54 C 0 s macNem1.NW_012014244v1 16091297 1 - 16982598 --A i macNem1.NW_012014244v1 I 22 C 0 s cerAty1.NW_012001373v1 2935785 1 - 3785965 --A i cerAty1.NW_012001373v1 I 50 C 0 s chlSab2.chr2 89606981 1 - 90373283 --A i chlSab2.chr2 I 49 C 0 s calJac3.chr5 57425572 1 + 159171411 -G- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15545990 1 + 16356641 -G- i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 392660 1 + 1231380 -G- i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1953368 1 + 11732439 -G- i aotNan1.NW_018500483v1 I 1 C 0 s mm10.chr2 181112657 2 + 182113224 CA- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I e otoGar3.GL873542 22169511 2 + 22939663 I e manLeu1.NW_012104365v1 5484264 228 + 6149316 I e colAng1.NW_012114444v1 4715991 550 - 5823884 M a score=115106.000000 s hg38.chr20_KI270871v1_alt 30274 12 + 58661 -----------GACAGCACAGTC s panTro5.chr20 65603637 12 + 66533130 -----------GACAGCACAGTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367872 12 + 62195757 -----------GACAGCACAGTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780080 12 - 1017659 -----------GACAGCACAGTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269866 12 - 110113093 -----------GACAGCACAGTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989359 12 - 92844088 -----------GACAGCACGGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639073 12 + 96509753 -----------GACAGCACGGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091298 12 - 16982598 -----------GACAGCACGGTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935786 12 - 3785965 -----------GACAGCACGGTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606982 12 - 90373283 -----------GACAGCACGGTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484492 12 + 6149316 -----------GACAGCACGGTC i manLeu1.NW_012104365v1 I 228 C 0 s calJac3.chr5 57425573 12 + 159171411 -----------GACAGCACAGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15545991 12 + 16356641 -----------GACAGCACAGTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392661 12 + 1231380 -----------GATAGCACAGTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1953369 12 + 11732439 -----------GGTAGCACAGTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169513 12 + 22939663 -----------GAAAGCACAGCC i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181112659 18 + 182113224 AAAATCCCATAGACAACA----- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I e colAng1.NW_012114444v1 4715991 550 - 5823884 M a score=284151.000000 s hg38.chr20_KI270871v1_alt 30286 23 + 58661 TGGCAG-GATGGGGTCTCGGTCAC s panTro5.chr20 65603649 23 + 66533130 TGGCAG-GATGGGGTCTCGGTCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367884 23 + 62195757 TGGCAG-GATGGGGTCTCGGTCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780092 23 - 1017659 TGGCAG-GATGGGGTCTCGGTCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269878 23 - 110113093 TGGCAG-GATGGGGTCTCGGTCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989371 23 - 92844088 TGGCAG-GATGGGGTCTTGGTCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639085 23 + 96509753 TGGCAG-GATGGGGTCTCGGTCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091310 23 - 16982598 TGGCAG-GATGGGGTCTCGGTCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935798 23 - 3785965 TGGCAG-GATGGGGTCTCGGTCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606994 23 - 90373283 TGGCAG-GAGGGGGTCTCGGGCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484504 23 + 6149316 TGGCAG-GATGGGGTCTCGGTCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4716544 23 - 5823884 TGGCAG-GATGGGGTCTCGGTCAC i colAng1.NW_012114444v1 M 550 C 0 s calJac3.chr5 57425585 23 + 159171411 TGACAG-GATGGAGTCTCAGTCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546003 23 + 16356641 TGGCAG-GATGGGGTCTCGATCAc i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392673 23 + 1231380 TGGCAG-GATGGGGTCTCGGTCAC i cebCap1.NW_016107870v1 C 0 I 220 s aotNan1.NW_018500483v1 1953381 23 + 11732439 TGGCAG-GATGGGGTCTCGGTCAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169525 22 + 22939663 TGGCAG-GAAGGGGT-TGGGACAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112677 24 + 182113224 TGGCAGAAATCAGGTCTTGGCCAC i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I a score=882863.000000 s hg38.chr20_KI270871v1_alt 30309 120 + 58661 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGGCCACAGCCACCCTCTGGGTCCCCCGGACAGCGGCCGCCGCAAGCCGCAGCTTAAACAACCA-CCAGGCAGGTGACTAGCACTTT s panTro5.chr20 65603672 120 + 66533130 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGGCCACAGCCACCCACTGGGTCCCCCGGACAGCGGCCGCCGCAAGCCGCAGCTTAAACAACCA-CCAGGCAGGTGACTAGCACGAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61367907 120 + 62195757 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGGCCACAGCCACCCACTGGGTCCCCCGGACAGCGGCCGCCGCAAGCCGCAGCTTAAACAACCA-CCAGGCAGGTGACTAGCACGAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780115 120 - 1017659 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGGCCACAGCCACCCACTGGGTCCCCCGGACAGCGGCCGCCACAAGCCGCAGCTTAAACAATCA-CCAGGCAGGTGACTAGCACGAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109269901 120 - 110113093 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATATGTGGCCACAGCCACTCTCCGGGTCCCCCGGACAGCGGCCGCCGCAAGCCGCAGCTTAAACAACCA-GCAGGCAGGTGACTAGCACGAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989394 120 - 92844088 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGCCTACAGCCACCCCGTGGGTTCCCCGGCCAGCAGCCGCCACAAGCCGCAGCTTAAACAACCA-CCAGGCAGGTGACTAGTGCGAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639108 120 + 96509753 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGCCTACAGCCACCCCGTGGGTTCCCCGGCCAGCAGCCGCCACAAGCCGCAGCTTAAACAACCA-CCAGGCAGGTGACTAGTGCGAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091333 120 - 16982598 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGCCTACAGCCACCCCGTGGGTTCCCCGGCCAGCGGCCGCCACAAGCCGCAGCTTAAACAACCA-CCAGGCAGGTGACTAGTGCGAT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935821 120 - 3785965 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGCCTACAGCCACCCCGTGGGTTCCCCGGCCAGCAGCCGCCACAAGCCGCAGCTTAAACCACCA-CCAGGCAGGTGACTAGCGCGAT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607017 120 - 90373283 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGCCTACAGCCACCCCGTGGGTTCTCCGGCCAGCAGCCGCCACAAGCCACAGCTTAAACAACCA-CCAGGCAGGTGACTAGCGCGAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484527 120 + 6149316 TGGAGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGCCTACAGCCACCCCGTGGGTTCCCCGGCCAGCAGCCGCCACAAGCCGCAGCTTAGACAACCA-CCAGGCAGGTGACTAGCGCGAT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4716567 120 - 5823884 TGGGGGGCCTGG-GGCCCCTGGAACTCAG-CATGTGTGGCTACAGCCACCGCGTGGGTCCCCCGGCCAGCAGCCGCCACAAGCCACAGCTTAAACAACCA-CCCGGCAGGTGACTAGCACGAT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425608 69 + 159171411 --------------------------------------------------C---GGGGACCCCCGCCAGCTGCCGCGGCAAACCGCAGCTTGAACCACCA-CCAGGCACGTGAGTAGCTTGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546026 70 + 16356641 --------------------------------------------------c--ggggggccccggccagccgccgccgcAAGCCGCAGCTTGAACCACCA-CCAGGCACGTGAGGAGCCCGGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1953404 72 + 11732439 --------------------------------------------------CGGGGGGGCCCCCGGCCAGCCGCCGTCACAAGCCGCAGCTTGAACCACCA-CCAGGCACGTGACTAGCCCGGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169547 121 + 22939663 TGGGGGACCTAGTAGCCTCTGGAACATGG-GACTTATGGCCATAGCTGTCACATGGGTCCCCTGGCCAGCAGCCGCCACAA-CCACAGTCTAAACAACCACCCAGGCAGGTGACTAGGGCTGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112701 113 + 182113224 --------TGAG-GACTCTTTCAACACAGAAATGTGTTCCCACAGCCACCCCACAAGTACCCTGGTCTGCAGCCACCATAAGCCACAGCTTAAACAAACC-CTAAGCAGGTGATTCAGGCAGA i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e cebCap1.NW_016107870v1 392696 220 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I a score=1521729.000000 s hg38.chr20_KI270871v1_alt 30429 156 + 58661 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACACCCAACCACAGAGCCAAGGGTTCGCGGCAGG-AAG-GT----------GGGGGTGGCAGGGGCCAAAATGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGATGACAAAGATGGCCCAAG s panTro5.chr20 65603792 156 + 66533130 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACACCCAACCACAGAGCCGAGGGTTCGTGGCAAG-AAG-GT----------GGGGGTGGCAGGGGCCAAAATGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGCCCAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368027 156 + 62195757 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACACCCAACCACAGAGCCGAGGGTTCGTGGCAAG-AAG-GT----------GGGGGTGGCAGGGGCCAAAATGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGCCCAAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780235 156 - 1017659 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACACCCAACCACAGAGCCAAGGGTTCGCCGCAGG-AAG-GT----------GGGGGTGGCAGTGGCCGAAATGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGCCCAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109270021 156 - 110113093 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACACCCAACCACAGAGCCAAGGGTTCGCGGCAGG-AAG-GT----------GGGGGTGGCCGGGGCCAAAATGGCCTGGCCTGGCCTTTTGAAAAAGCAGCTTTCTGGAGACAGATGACAAAGATGGCCCAAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989514 156 - 92844088 ATATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACGCCCAGCCACAGAGCCAAGGGTTCGCGGCAGG-AAG-GT----------GGGGGTGGCAGGGGCCGAAACGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGACCAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639228 156 + 96509753 ATATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACGCCCAGCCACAGAGCCAAGGGTTCGCGGCAGG-AAG-GT----------GGGGGTGGCAGGGGCCGAAACGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGACCAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091453 156 - 16982598 ATATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACGCCCAGCCACAGAGCCAAGGGTTCGCGGCAGG-AAG-GT----------GGGGGTGGCAGGGGCCGAAACGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGACCAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2935941 156 - 3785965 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACGCCCAGCCACAGAGCCAAGGGTTCATGGCAGG-AAG-GT----------GGGGGTGGCAGGGGCCGAAACAGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGATGACAAAGATGGACCAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607137 152 - 90373283 GTATTGATCCAGGCACTAAAAACCCAGGAAAGAAGACGCCCAGCCACAGAGCCAAGGGTTCGCGGCAGG-AAGTGG----------GGGGGTGGCAGGGGCCAAAAC-----AGCCTGGCCTTTCGATAAAGCAGCTTTCTGGAGAGAGACGACAAAGATGGACCAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484647 156 + 6149316 GTATTGATTCAGGCACTAAAAACCCAGGAAAGAAGACACCCAGCCACAGAGCCAAGGGTTCATGGCAGG-AAG-GT----------GGGGGTGGCAGGGGCCGAAACGGCCTGGCCTGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAAAGATGGACCAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4716687 155 - 5823884 GTATCGATCCAGGCACTAAAAACCCAGGAAAGAAAACACCCAGCCGCAGAGCCAAGGGTTCACGGCAGG-AAG-TG----------GGGGGTGGCAGGGGCCGAAACGG-CTGGCCCGGCCTTTCGAAAAAGCAGCTTTCTGGAGACAGACGACAGAGATGGGCCAAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425677 163 + 159171411 GTATTGATCCAGGCACT-AAAACCCAGG-AAGAATACACCCAACGACAGAACCCAGAGTTCTCAGCAGG-AAA-GTGAGGGGGGC-GGGGGATGCAGGGGCGGAAATGGCCTGGCCTGGCCTTTCGGAAAAACAACTTTCTGGAGACAGATGACAAAGATGGCCCAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546096 161 + 16356641 GTATTGATCCAGGCACT-GAAACCCAGG-AAGAAGACACCCAACCACAGAACCCAGGGTTCTCAGCAGG-AAA-GTGAGGGGG---CGGGGGTGCAGGGGCCGAACTGGCCTGGCCCGGCCTTTCGAAAAAACAGCTTTCTGGAGACAGATGACAAAGACGGGCCAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 392916 159 + 1231380 GTATTGATCCTGGCACT-AAAACCCAGG-AAGAAGACGCCCAACCACAGAACCCAGGGTTCTCAGCAGGAAAA-GTGGGGAGGGT-GGGGGGTGCAGGGGCCGAAGTGGCCT-----GGCCTTTTGAAAAAACAGCTTTCTGGAGACAGACGACAAAGATGGGCCAAG i cebCap1.NW_016107870v1 I 220 I 89 s aotNan1.NW_018500483v1 1953476 164 + 11732439 GTATTGATCCAGGCACT-AAAACCCAGG-AAGAAGACATCCAACCACAGAACCCAGGGTTCTCAGCAGG-AAA-GTGAGGGGGGCAGGGGGGTGCAGGGGCCGAAATGGCCTGGTCTGGCCTTTCAAAAAAACAGCTTTCTGGAGACAGATGACAAAGACGGGCCAAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169668 133 + 22939663 GTATTGATCCAGGCACTGAAAATGCTGGAAATAAAACACCAAACGACAGAGGAA--------CAGCCCT-AAG-GT--------------------GGGGCCCAAATGGACTG----AGCCTTGCAGAGAAGAAGCTTTCTGAAGACAGA-GATGAAGATGGCTCAAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112814 120 + 182113224 GTATCGATCCAGGCCCTCAGAAC-CAGGAAGGGAAATGCTCAGCTACAG------GGGCTGCCAGCTCC-AGG-------------AAGGATTGCTCACACTAAGAA------------------TAGAAAATAGC-TTCTGAGGACAAGTGAGGAAGAG-------- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I a score=607514.000000 s hg38.chr20_KI270871v1_alt 30585 83 + 58661 ----TCACGAGAAGAAGCACCGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA--CTCCA s panTro5.chr20 65603948 83 + 66533130 ----TCACGGGAAGAAGCACCGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA--CTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368183 83 + 62195757 ----TCACGGGAAGAAGCACCGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA--CTCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780391 83 - 1017659 ----TCACGGGAAGAAGCACCGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA--CTCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109270177 84 - 110113093 ----TCACGGGAAGAAGCACCGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989670 82 - 92844088 ----CCATGGGAAGAAGCA--GAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639384 82 + 96509753 ----CCATGGGAAGAAGCA--GAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091609 82 - 16982598 ----CCATGGGAAGAAGCA--GAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936097 84 - 3785965 ----CCATGGGAAGAAGCACTGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCTA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607289 84 - 90373283 ----CCATGGGGAGAAGCACTGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484803 84 + 6149316 ----CCATGGGAAGAAGCACTGAGAAGAAAGGGGAGGGAGGCTCGTTCACACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4716842 84 - 5823884 ----CCATGGGAAGAAGCACTGAGAAGAAAGGGGAGGGAGGCTCGTTCATACCTGAT--GGGCT------------CCAGCCAGAGCCACCACTGA-CCTCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425840 94 + 159171411 ----CCCTGGGAAGAGGCACCAAGAAGAAAGGCTGGGGAGTGGCTTCACCACCTGAA--GGGCTCCCAGGCC-CGTCCAGCCAGACCCACCGCTGA-CCTCC- i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15546257 90 + 16356641 ----CCCTGGGAAGAGGCACCGAGAAGAACAGTGGGGGAGGGGCGTCCCCACCTG-A--GGCCTCCTGGGCT-GGCCCCGC---ATACCCCACTGA-CCTCC- i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1953640 93 + 11732439 ----CCTTGGGAAGAGACACCCAGAAGAAAGGC-GGGGAGTGGCTTCCCCACCTGAA--GGGCTCCCAGGCC-GGTCCAGCCAGAGCCACCGCTGA-CCTCC- i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22169801 97 + 22939663 ----CCATGCAGTGAACCACCAAGAAGAAAGG--AGGGGGGCTCATTTCCATCTGACCAGGCCTCCCAGGGTAGGCCCAGCCAGAGCTACTACTGACCCTTCG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112934 59 + 182113224 TCAGCCATGGGATAAAA-----------------GGAGAGGCTCATTTATATCTTGC-------------------CTGGC-----CCATGACT-A-CTTCA- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e cebCap1.NW_016107870v1 393075 89 + 1231380 I e canFam3.chr24 47087185 462 + 47698779 I a score=527939.000000 s hg38.chr20_KI270871v1_alt 30668 71 + 58661 TCCCTCCACCCAGGGCT-CTTGAAGC----AAACC-----------CCAGGCAGGGGTGGGGCCCGGTCT---------GGGCCAGGACTCTCGCT s panTro5.chr20 65604031 71 + 66533130 TCCCTCCACCCAGGGCT-CTTGAAGC----AAACC-----------CCAGGCAGTGGTGCGGCCCGGTCT---------GGGCCAGGACTCTCGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368266 71 + 62195757 TCCCTCCACCCAGGGCT-CTTGAAGC----AAACC-----------CCAGGCAGTGGTGCGGCCCGGTCT---------GGGCCAGGACTCTCGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780474 71 - 1017659 CCCCTCCACCCGGGGCT-CTTGAAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCGGTCT---------GGGCCAGGACTCTCGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109270261 71 - 110113093 TCCCTCCACCCAGGGCT-CTCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCGGTCT---------AGGCCAGGACCCTCGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989752 71 - 92844088 TCCCTCCAGCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGGCCAGGACCCTTGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639466 71 + 96509753 TCCCTCCAGCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGGCCAGGACCCTTGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091691 71 - 16982598 TCCCTCCAGCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGGCCAGGACCCTTGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936181 71 - 3785965 TCTCTCCAGCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGGCCAGGACCCTTGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607373 71 - 90373283 TCCCTCCAGCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGGCCAGGACCCTTGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484887 71 + 6149316 TCCCTCCAGCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGGCCAGGACCCTTGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4716926 71 - 5823884 TCCCTGCACCCAGGGCT-CCCGGAGC----AAACC-----------CCAGGCAGTGGTGGGGCCCAGTCT---------GGACCAGGACCCTTGCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425935 53 + 159171411 TCCCTCCACCCAGGGCT-CTCGGAGC----AAGCC-----------CTGGGCAGGGGAG--GCCCAGTGC---------A---------------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15546348 43 + 16356641 TCCCTCCACCCAGGGCT-CTCGGAGC----AAACC-----------CTGGGCAGAGGGG------------------------------------- i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 393164 70 + 1231380 TCCCTCCACCCAGGGCT-CTCGGAGC----ACACC-----------CCGGGCAGAGGGG-GGCCCGCTGC---------ACGCCAGGACCCTCGCC i cebCap1.NW_016107870v1 I 89 C 0 s aotNan1.NW_018500483v1 1953734 39 + 11732439 TCCCTCCACCCAGGGCT-CTTGGAGC----AAAGC-----------CTGGGCAGA----------------------------------------- i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22169898 89 + 22939663 TCCCCCAGCCCAGGACT---TGAAGC----AAGCCTGAGCAACCATCAGGGTGAGGGCTAAGCACAGCCTCAAGGAGCCAGGCCAGGACCCTCCCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181112993 59 + 182113224 -------GCTTAGAGCAGCCTGGAGCCTTGAAGTC-----------ATGGTAAACAGCAGGCTCCAGGCT---------GGGTCAG---------- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 115960 421 + 555560 I e canFam3.chr24 47087185 462 + 47698779 I a score=263687.000000 s hg38.chr20_KI270871v1_alt 30739 36 + 58661 GGCTGGGGGCGCCCA--CCGCCAGCCTTGGGGCCGTGA s panTro5.chr20 65604102 36 + 66533130 GGCTGGGGGCGCCCA--CCGCCAGCCTTGGGGCCGTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368337 36 + 62195757 GGCTGGGGGCGCCCA--CCGCCAGCCTTGGGGCCGTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780545 36 - 1017659 GGCTGGGGGCGCCCA--CCGCCAGCCTTGGGGCCGTGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109270332 36 - 110113093 GGCTGGGGGCGCCCA--CCGCCAGCCTCGGCGCCGTGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91989823 36 - 92844088 GGCTGGGGGCGCCCA--TCGCCAGCCTCGGCGCCATGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639537 36 + 96509753 GGCTGGGGGCGCCCA--TCGCCAGCCTCGGCGCCATGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091762 36 - 16982598 GGCTGGGGGCGCCCA--TCGCCAGCCTCGGCGCCATGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936252 36 - 3785965 GGCTGGGGGCGCCCA--CCGCCAGCCTCGGCGCCATGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607444 36 - 90373283 GGCTGGGGGCACCCA--CCGCCAGCCTTGGCGCCATGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484958 36 + 6149316 GGCTCGGGGCGCCCA--CCGCCAGCCTCGGCGCCATGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4716997 36 - 5823884 GGCTGGGGGCGCCCA--CCGCCAGCCTCGACGCCATGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57425988 35 + 159171411 GGCTC-GGGGACCCA--CCACCAGCCTGGGCGCCACGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546391 33 + 16356641 GGCTC-GGGCACCCA--C--CCAGCCTGGGTGCCACGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 393234 33 + 1231380 GGCTT-GGACACCCA--C--CCAGCCTGGGTGCCGCAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1953773 35 + 11732439 GGCTC-GGGGACCCA--CCGCCAGCCTGGGTGCCGCGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22169987 31 + 22939663 GGCCTGAGGTACCCA--CCTCCTG---AGCAGCCA--A i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113052 5 + 182113224 TGCTG--------------------------------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 116381 26 + 555560 GGGCAggggcgcccggcccgcccgcc------------ i dasNov3.JH567899 I 421 C 0 e canFam3.chr24 47087185 462 + 47698779 I a score=904747.000000 s hg38.chr20_KI270871v1_alt 30775 56 + 58661 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGCAGCTTCCAGGTGCCTCCCCG s panTro5.chr20 65604138 56 + 66533130 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGCAGCTTCCAGGTGCCTCCCCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368373 56 + 62195757 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGCAGCTTCCAGGTGCCTCCCCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780581 56 - 1017659 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGCAGCTTCCAGGTGCCTCCCCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109270368 54 - 110113093 CTCACCTTGCTGTGAGCATAGACCACGGAGCCCAGCAGCTTC--AGTGCCTCCCCG i nomLeu3.chr13 C 0 M 1108 s rheMac8.chr10 91989859 56 - 92844088 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639573 56 + 96509753 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091798 56 - 16982598 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936288 56 - 3785965 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607480 56 - 90373283 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5484994 56 + 6149316 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717033 56 - 5823884 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGTAGCTTCCAGGTGCCTCCCCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426023 56 + 159171411 CTCACCTTGCTGTGGGCATAGACCACCGAGCCCAGCAGCTTCCAGGTGCCGCCCCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546424 56 + 16356641 CTCACCTTGCTGTGGGCGTAGACCACCGAGCCCAGCAGCTTCCAGGTGCCGCCACG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 393267 56 + 1231380 CTCACCTTGCTGTGGGCGTAGACCACCGAGCCCAGCAGCTTCCAGGTGCCACCCCG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1953808 56 + 11732439 CTCACCTTGCTGTGGGCGTAGACCACCGAGCCCAGCAGCTTCCAGGTTCCGCCCCG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170018 56 + 22939663 CTCACCTTGCTGTGGGCATAGACCACAGAGCCCAGCAGCTTCCAGGTGCCGCCTCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113057 56 + 182113224 CTCACCTTGCTGTGAGCGTAGACTACCGATCCCAAGAGCTTCCAGGTGCCACCCCT i mm10.chr2 C 0 C 0 s canFam3.chr24 47087647 56 + 47698779 CTCACCTTGCTGTGGGCGTAGACCACGGAGCCCAGCAGCTTCCAGGTGCCACCGCG i canFam3.chr24 I 462 C 0 s dasNov3.JH567899 116407 54 + 555560 --cACCTTGCTGTGGGCGTAGACCACCGAGCCCAGCAGCTTCCAAGTGCCGCCCCG i dasNov3.JH567899 C 0 C 0 a score=2037053.000000 s hg38.chr20_KI270871v1_alt 30831 151 + 58661 CCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCAGATGTGGCAAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCGTGGA----------------------------GCTGGTGA s panTro5.chr20 65604194 151 + 66533130 CCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCAGATGTGGCAAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCGTGGA----------------------------GCTGGTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368429 151 + 62195757 CCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCAGATGTGGCAAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCGTGGA----------------------------GCTGGTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780637 151 - 1017659 CCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCAGATGTGGCAAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATCAGCACCATGATGTCTAC---AA---AGCGGGCGTGGA----------------------------GCTGGTGA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91989915 150 - 92844088 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGCGCGGATGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCATAGA-----------------------------CTGGTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639629 150 + 96509753 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGCGCGGATGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCATAGA-----------------------------CTGGTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16091854 150 - 16982598 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGCGCGGATGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCATAGA-----------------------------CTGGTGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936344 150 - 3785965 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGCGCGGATGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACTGCAATGGAGGCGATGAGCACCATGATATCTAC---AA---AGCGGGCATAGA-----------------------------CTGGTGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607536 150 - 90373283 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGCGCAGATGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCACAGA-----------------------------CTGGTGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485050 150 + 6149316 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGCGCGGATGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACCGCAATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGCGGGCATAGA-----------------------------CTGGTGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717089 151 - 5823884 CCGGTCCATGCGGATCATCCGTAGAATCTGCAGGAAGCGCAGGCTCCGCAGTGCGGACGTGGCAAAGACATTGCCCTGGGAGCCGGCGGCCAGCACCGCGATGGAGGCGATGAGCACCATGATGTCTAC---AA---AGTGGGCATAGA----------------------------GCTGGTGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426079 151 + 159171411 TCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCAGACGTGGCAAAGACGTTGCCCTGGGAGCCAGCGGCCAGCACCGCGATGGAGGCGATCAGCACCATGATGTCTGC---GA---GGTGGGCGTGGA----------------------------GCTGCTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546480 150 + 16356641 CCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCGGACGTGGCGAAGACGTTCCCCTGGGAGCCGGCGGCCAGCACCGCGATGGAGGCGATGAGCACCATGATGTCTGC---GA---GGC-GGCGCGGA----------------------------GCTGGTGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 393323 151 + 1231380 CCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCGGACGTGGCAAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACCGCGATGGAGGCGATGAGCACCATGATGTCTGT---GA---GGCGGGCGTGGA----------------------------GCTGGTGA i cebCap1.NW_016107870v1 C 0 I 33 s aotNan1.NW_018500483v1 1953864 151 + 11732439 TCGGTCCATGCGGATCATCCGCAGAATCTGCAGGAAGCGCAGGCTCCGGAGCGCGGACGTGGCGAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACGGCGATGGAGGCGATGAGCACCATGATGTCTGC---GA---GGCGGGCGCGGA----------------------------GCCGGTGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170074 145 + 22939663 TCGGTCCATGCGGATCATCCGCAGGATCTGCAGAAACCGCAGGCTCCGAAGCGCAGATGTGGCGAAGACGTTGCCCTGGGAGCCGGCAGCCAGCACCGCAATGGAGGCAATGAGCACCATGATGTCTGC---GAGGGAGGGGGTGTGA------------------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113113 145 + 182113224 CCGGTCCATACGGATCATCCGCAAGATTTGCAAGAACCGCAAGCTCCGAAGCGCAGATGTGGCAAAGACATTGCCCTGGGAACCAGCAGCCAGCACAGCAATGGAGGCAATCAGCACCATGATATCTGTGG-GA---GACAGGCACAGA------------------------------------ i mm10.chr2 C 0 C 0 s canFam3.chr24 47087703 150 + 47698779 CCGGTCCATGCGGATCATCCTCAGGATCTGCAGGAAGCGCAGGCTCCGGAGCGCGGACGTGGCGAAGACGTTGCCCTGGGAGCCGGCGGCCAGCACGGCGATGGAGGCGATGAGCACCATGATGTCTGCGG-GA---GACGG---CAGG----------------------------GCTGCAGG i canFam3.chr24 C 0 I 4 s dasNov3.JH567899 116461 182 + 555560 GCGGTCCATGCGGATCATCCGCAGGATCTGCAGGAAGCGCAGGCTCCGGAGCGCGGACGTGGCGAAGACATTGCCCTGGGAGCCAGCGGCCAGCACGGCGATGGAGGCGATGAGCACCATGATGTCTGCGGAGA---AgggggcgcggggcgcgcggggcATGAGGGGCGGGAGGGCGCTGGGGA i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109270422 1108 - 110113093 M a score=110196.000000 s hg38.chr20_KI270871v1_alt 30982 38 + 58661 GCTGCTGGGCCGC--TCCCCGCACCCCC-TTGGAGAAAACT s panTro5.chr20 65604345 38 + 66533130 GCTGCTGGGCCGC--CCCTTGCGCCCCC-TTGGAGAAAACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368580 38 + 62195757 GCTGCTGGGCCGC--CCCTTGCGCCCCC-TTGGAGAAAACT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780788 38 - 1017659 GCTGGTGGGCCGC--CCCCTGCACCCCC-TTGGAGAAAACC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91990065 36 - 92844088 GCTGGTGGGCCGC--CCCCTGCACCCAC-GTGGAGAAA--C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639779 36 + 96509753 GCTGGTGGGCCGC--CCCCTGCACCCAC-GTGGAGAAA--C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092004 36 - 16982598 GCTGGTGGGCCGC--CCCCTGCACCCAT-GTGGAGAAA--C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936494 36 - 3785965 GCTGGTGGGCCGC--CCCCTGCACCCAC-GTGGAGAAA--C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607686 36 - 90373283 GCTGGTGGGCCGC--CCCCTGCACCCGC-GTGGAGAAA--C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485200 36 + 6149316 GCTGGTGGGCCGC--CCCCTGCACCCGC-GTGGAGAAA--C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717240 37 - 5823884 GCTGGTGCGCCGC--CCCCTGCACCCGC-GTGGAGAAA-CC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426230 32 + 159171411 GCTG--GGGCTG---CCCCAGCAGCTCC-TGGGGAAAC--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546630 32 + 16356641 GCTG--CGGCTG---CCCCTGCGGCCCC-CGGGGAAGC--- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954015 33 + 11732439 GCTG--GGGCTGC--CCCCTGCAGCCCC-CGGGGGAAA--- i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22170219 18 + 22939663 GCTCATGGG--------------------GAGGGGACA--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113258 14 + 182113224 ---------------TCACAGCATCTCC-T----------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47087857 38 + 47698779 GCTGGCCCGGCACCGCCCGTGTGGCCGCGGCGGAGGGG--- i canFam3.chr24 I 4 C 0 s dasNov3.JH567899 116643 27 + 555560 -GGGGCAGGCTGG--TCTCAGCGCCCGT-CC---------- i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109270422 1108 - 110113093 M e cebCap1.NW_016107870v1 393474 33 + 1231380 I a score=1512950.000000 s hg38.chr20_KI270871v1_alt 31020 190 + 58661 CCCCACCCCG-CGTTCCA-GGAGGATGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCGCCTGGTGTGGGCTCTG-----TCAGGCCCCAGGAA-AGACATTACTATCGTCCAC----CCTG------------CCTGTGGGGC---CCAGGATGG--GCAGCCCAGC-GCCACATTCCTCTTCCTGACATTTAGGCAGAGTTAACCACAG--CCTCTGACTC- s panTro5.chr20 65604383 190 + 66533130 CCCCACCCCG-GGTTCCA-GGAGGATGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCGCCTGGTGTGGGCTCTG-----TCAGGCCCCAGGAA-GGACATTACTATCGTCCAC----CCTG------------CCTGTGGGGC---CCAGGATGG--GCAGCCCAGC-GCCACATCCCTCTTCCTGACATTTAGGCAGAGTTAACCACAG--CCTCTGACTC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368618 190 + 62195757 CCCCACCCCG-GGTTCCA-GGAGGATGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCGCCTGGTGTGGGCTCTG-----TCAGGCCCCAGGAA-GGACATTACTATCGTCCAC----CCTG------------CCTGTGGGGC---CCAGGATGG--GCAGCCCAGC-GCCACATCCCTCTTCCTGACATTTAGGCAGAGTTAACCACAG--CCTCTGACTC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 780826 190 - 1017659 CCCCACCCTG-GGTTCCA-GGAGGATGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCGCCTGGTGTGGGCTCTG-----TCAGGCCCCAGAAA-GGACATTACTATCGTCCAC----CCTG------------CCTGTGGGGC---CCAGGATGA--GCAGCCCAGC-GCCACATCACTCTTCCTGACATTTAGGCAGAGTTAACCACAG--CCTCTGACTC- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91990101 189 - 92844088 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCACCTGGTGTGGGCTCTG-----TCGGGACCCAGGAA-GGACATGACTATCATCCA-----CCTG------------CCTGCAGGGC---CTGGGACGG--GCAGCCCGGC-ACAACATCCCTCTTCCTGACATTTAGGCCGGGTTAACCACAG--GCTCTGACTC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95639815 189 + 96509753 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCACCTGGTGTGGGCTCTG-----TCGGGACCCAGGAA-GGACATGACTATCATCCA-----CCTG------------CCTGCAGGGC---CCGGGACGG--GCAGCCCGGC-ACAACATCCCTCTTCCTGACATTTAGGCCGGGTTAACCACAG--GCTCTGACTC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092040 189 - 16982598 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCACCTGGTGTGGGCTCTG-----TCGGGACCCAGGAA-GGACATGACTATCATCAA-----CCTG------------CCTGCAGGGC---CCGGGACGG--GCAGCCCGGC-ACAACATCCCTCTTCCTGACATTTAGGCCGGGTTAACCACAG--GCTCTGACTC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936530 189 - 3785965 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGTGCCTGGTGTGGGCTCTG-----TTGGGACCCAGGAA-GGACATGACTATCGTCCA-----CCTG------------CCTGCAGGGC---CCGGGACGG--GCAGCCCGGC-ACAACATCTCTCTTCCTGACGTTTAGGCCAGGTTAACCACAG--GCTCTGACTC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607722 189 - 90373283 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCGGGAA----------GGTGTATGCCCAGCGCCTGGTGTGGGCTCTG-----TCAGGACCCAGGAA-GGACATGACTATCGTCCA-----CCTG------------CCTGCAGGGC---CCGGGACGG--GCAGCCCGGC-ACAACATCCCTCTTCCTGACATTTAGGCCGGGTTAACCACAG--GCTCTGACTC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485236 188 + 6149316 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCGGGAA-----------GTGTATGCCCAGCGCCTGGTGTGGGCTCTG-----TCGGGACCCAGGAA-GGACATGACTATCGTCCA-----CCTG------------CCTGCAGGGT---CCGGGACGG--GCAGCCCGGC-ACAACATCCCTCTTCCTGACGTTTAGGCCGGGTTAACCACAG--GCTCTGACTC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717277 190 - 5823884 CCCCACCCCA-GGTTCCA-GGAGGCTGTGCAGAGGGGCCGGAA----------GGTGTATGCCCAGCGCCTGGTGGGGGCTCTG-----TCGGGACCCAGGAA-GGACATTACTATCGTCTAC----CCTG------------CCTGCAGGGC---CCGGGACGG--GCAGCCCGGC-ACAACATCCCTCTTCCTGACATTTAGGCCGAGTTAACCACAG--GCTCTGACTC- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426262 190 + 159171411 CCCCGCCCAG-GGTTCCA-GGATGCTGTGCAGAGGGCAGGGAA----------GGTGCGTGCCAAGTGCCGGGCATGGGCTCTG-----CCCGGCCTCAGGAA-GGCCGTTACGACCGTCCAC----CCTA------------CCTGTGGGGC---CCGGGACAG--GCAGCCTGGT-GCCACGTCCCTCTTCCTGAAACTCAGGCAGAGTTAACCACAG--GCTCTGACTC- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546662 189 + 16356641 CCCAGCCCCG-GGTTCCA-GGAGGCTGTGCAGAGGGCCGGGAA----------GGTGCGTGACACGCGCCCAGTGTGCGCTCTG-----TCCAGCCTCAGGAA-GGCCATTACCACCACCCAC----CCTG------------CCTG-GGGTC---CCGGGACAG--GCAGGCTGGC-GCCACGTCCCTCTTCCTGACACTCAGGTGGAGTGAACCACAG--GCTCCGACTC- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 393507 190 + 1231380 CCCAGCCCCG-GGTTCCA-GGAGGCTGTGCAGAGGGCCGGGAA----------GGTGTGTGCCAAGCGCCCGGCGTGGGCTCTG-----TCCGGCCTCAGGAA-GGCCATTACGACCGTCCAA----CCTG------------CCTGCGGGGC---CCAGGACAG--GCAACCTGGC-GCCACGTCCCTCTTCCTGAGACTCAGGCGCAGTTAACCACAG--GCTCCGACTC- i cebCap1.NW_016107870v1 I 33 C 0 s aotNan1.NW_018500483v1 1954049 190 + 11732439 CCCAGCCCCG-GGTTCCA-GGAGGCCGTGCAGACGGCCGGGAA----------GGTGCGTGCCAAGCGCCTGGCATGGGCTCCA-----TCCGGCCTCGGGAA-GGCCATCGCGACCGTCCAC----CCTG------------CCTGTGGGGC---CCGGGACAG--GCAGCCTGGC-ACCACGTCCCTCCTCCTGACACTCAGACGGAGTTAACCACAG--GCTCCGACTC- i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22170237 217 + 22939663 ---GCACCAG-GGCTACA-GGGGGAGGGGCAGGTGGACCAGAGTTGCATGCAGGGTGCTGGTATGGGGCAGGATGTGGGGCCAGAGCACTCCAGGCCCAGATA-GACATCTACTACTGACCAC----CCTGGTCCTCAGTGGTCCTGAAAGTCACTCCAGAACAG--GCTGCCCAGC-GCCCTGTCCCTCCCTCCTGTCCCTAGCCCATGTTAGCCATGG--GATCTGCCTT- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113272 177 + 182113224 -----CCCCG-GGGTCCACAGAGCATGACTCAATGGCCCCGTA----------GACATGCA---------------AGGTAATG-----TGGGGCCCTGGGAACGGTGGTTTACAGTGCCCACCCTGCCTA------------CCTGTAGTGT---CCAGGAGAG--ACTGCCCAGT-ACTGTGTCTC-CCTCCCAAGACCTAGGCCCTGTCAGCCATTGCACCTCCAACTC- i mm10.chr2 C 0 C 0 s canFam3.chr24 47087895 157 + 47698779 -----------GCGCCCG-AGGAGATGGACCGATGGACGAGT-----------GACACATGCGAAGGGACAGCAGGGGACAGTA-----C---GGTCCAGGAG-------------------C----CCAG------------CCCG----GC---CCGGGGCGGCAGCTGTCCCGCGACCTCCCCCCTCCGCCGGCCGCTCAGGCTGCATCCAGCACGG--GCTGGAAGGC- i canFam3.chr24 C 0 I 2 s dasNov3.JH567899 116670 135 + 555560 CTCCACCCCATGACGCCA-GGACCACGTG------------------------GG----------GCCCCCGGCGTGGCCGCAG-----CAGGTGCCCACGGA-A-----TCCCGGGGCCCA-----CCCG------------CC-------C---CCTG-------CCCACCGGGC-GCCGAGCTCC---------CGCCTGAACCAAGCCGA--------GCTCCGACCCC i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109270422 1108 - 110113093 M a score=3901107.000000 s hg38.chr20_KI270871v1_alt 31210 342 + 58661 CAAGTCAGCAGGTGAAAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGCAGAC---GCCCCAGCTCCCCCCAGGGCTGAGTCCGTCCCTGGGTGCCTGGCCCTGATTCTAGCAATACCACCCCCACCAGGCCTCACCAATCACACAGAACGGTTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTTG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCAGCCTGGACA s panTro5.chr20 65604573 342 + 66533130 CAAGTCAGCAGGTGAAAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGCAGAC---GCCCCAGCTCCCCCCAGGGCTGAGTCCGTCCCTGGGTGCCTGGCCCTGATTCTAGCAATACCACCCCCACCAGGCCTCACCAATCACACAGAATGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACAATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCAGCCTGGACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61368808 342 + 62195757 CAAGTCAGCAGATGAAAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGCAGAC---GCCCCAGCTCCCCCCAGGGCTGAGTCCGTCCCTGGGTGCCTGGCCCTGATTCTAGCAATACCACCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCAGCCTGGACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781016 339 - 1017659 CAAGTCAGCAGGTGAAAATAAACTTCC---AGGAGTCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCATGCAGAC---GCCCCAGCTCCCCCCAGGGCTGAGTCTGTCCCTGGGTGCCTGGCCCTGATTCTAGCAATACCACCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCAGCCTGGACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109271530 342 - 110113093 CAAGTCAGCAGGTGAAAAGAAACTTCCAGAAGGAACCA--GTCCTG---------------------CCCAGCCT-CTCCGGCCCACGCAGAC---ACCCCAGCTCCCCCCAGGGCTAAGTCCGTCCCTGGGTGCCTGGCCGTGATTCTAGCAATGCCACCCCCGCCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCAGCCTGGACA i nomLeu3.chr13 M 1108 C 0 s rheMac8.chr10 91990290 345 - 92844088 CAAGTCAGCAGGTGAGACGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGTAGACCTAGCCCCAGCTCCCCCCAGTGCTGAGTCTGTCCCTGGGTCCCTGGCCCCGATTCCAGCAATGCCGCCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGTCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGACACGGGGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640004 345 + 96509753 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGTAGACCTAGCCCCAGCTCCCCCCAGTGCTGAGTCTGTCCCTGGGTCCCTGGCCCCGATTCCAGCAATGCCGCCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGTCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGACACGGGGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092229 344 - 16982598 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGTAGACCTAGCCCCGGCT-CCCCCAGTGCTGAGTCTGTCCCGGGGTCCCGGGCCCCGATTCCAGCAACGCCGCCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGTCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGACACGGGGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2936719 345 - 3785965 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGTAGACCTAGCCCCAGCTCCCCGCAGTGCTGAGTCTGTCCCTGGGTCCCTGGCCCCGATTCCAGCAATGCCGCCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGACCCAGGGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89607911 345 - 90373283 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGTAGACCTAGCCCCAGCTCCCCCCAGTGCTGAGTCCGTCCCTGGGTCCCTGGCCCCGATTCCAGCAATGCCGCCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGCGAGG--AA------AGCTGAGGCCACCTCG---------AGGCCTGGGGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485424 345 + 6149316 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGGCCCACGTAGACCTAGCCCCGGCTCCCCCCAGTGCTGAGTCTGTCCCTGGGTCCCTGGCCCCGATTCCAGCAATGCCGCCCCCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACACCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGACCCAGGGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717467 345 - 5823884 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGAGCCA--GTCCTG---------------------CCCAGCCT-CTCTGACCCACGTAGACCTAGCCCCAGCTCCCCCCAGTGCTGAGTCCGTCCCTGGGTCCCTGGCCCCGATTCCAGCAATGCGACCCCCACCAGGCCTCACCAATCACACAGAATGGCTTCCGGGCAAACTTGAGCCGCCCCCTCCAGCCACGGTACCGGCAGCAGCAGCCTGCGGCCCAGATCCGCACGAAGTACTCCACGCCAAACACCACGATAGTCACGATTTCCTGC-AGGGGAGG--AA------AGCTGAGGCCACCTCG---------AGGCCTGGAGGAGGCCCTGGGGGC---------------CCAGCCTGGCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426452 306 + 159171411 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGA-----------------------------------------------GCCCACGCAGAC---ACCCCAGCTCCCCCCAGGGCTGAGTCCGTGCCTGGGTCCCTGGCCCCAA------------CACCCGCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCGAACTTCAGCCTTCCCCTCCAGCCGCGGTAACGGCAGCAACAGCCCGCAGCCCAGATCCGCACGAAGTACTCAACACCGAACACCACGATGGTCACAATTTCCTGC-AGGGGAGG--CG------AGCTGAAGCCA-CGTG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCTGCCTGGGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15546851 305 + 16356641 CGAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGA-----------------------------------------------GCCCACGCAGAC---GCCCCAGCTCCCCCCAGGGCCGAGTCCCTGCCTGGGTCCCCGGCCCCAA------------CA-CCGCACCAAGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCTCCCCCTCCAGCCGCGGTAACGGCAGCAGCAGCCTGCGGCCCAGATCCGCACAAAGTACTCCACGCCGAACACCACGATGGTCACGATTTCCTGC-AGGGGAGG--CG------AGCTGAGGCCA-CGCG---------AGGCCTGGGGGAGGGCCTGGGGGC---------------CCCGCCTGGGCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 393697 306 + 1231380 CAAGTCAGCAGGCGAGAGGAAACTTCCAGAAGGA-----------------------------------------------GCCCACGCAGAC---GCCCCAGCTCCCCCCAGGGCTGAGTCCGTGCCTGGGTCCCCGGCCCCGA------------CACCCGCACCAGGCCTCACCAATCACGCAGAATGGCTTCCGGGCGAACTTGAGCCTCCCCCTCCAGCCGCGGTAACGGCAGCAGCAGCCCGCGGCCCAGATCCGCACGAAGTACTCCACGCCGAACACCACAATGGTCACGATTTCCTGC-AGGGGAGG--CG------AGCTGAGGCCA-CGCG---------AGGCCTGGAGGAGGGCCTGGGGGC---------------CCCGCCTGGGCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954239 294 + 11732439 CAAGTCAGCAGGTGAGAAGAAACTTCCAGAAGGA-----------------------------------------------GCCCACGCAGAC---GCCCCAGCTCCCCCCGGGGCTGAGTCCGCGCCTGGGTTCCCGGCCCCGA------------CACCTGCACCAGGCCTCACCAATCACACAGAACGGCTTCCGGGCAAACTTGAGCCTCCCCCTCCAGCCGCGGTAACGGCAGCAGCAGCCGGCGGCCCAGATCCGCACGAAGTACTCCACGCCGAACACCACGATGGTCACAATTTCCTGC-AGGGGAGG--CG------AGCTGAGGCCA-CGCG---------A------------GGCCTGGGGGC---------------CCCGCCTGGGCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170454 343 + 22939663 CAAGTCAGCACGTAAGAAGAAACTTCCAGAAGGAGCCA--GTCCTGTTCCTGGGCCTCCCTCCCTCCTCCCACCT-CCCTAGCCAACGCAGAT---GCCCCAATT-CTTCCAGGGCC----CCCACGCTGGGACCC---------------------CACCCCCA-CAGGGCTCACCAATTACACAGAACGGCTTCCTGGCGAACTTGAGTCGCCCCCGCCAGCCACGATACCGGCAGCAGCAGCCGGCGGCCCAGATCCGCACAAAGTACTCAACACCAAACACCACGATGGTCACAATTTCCTAC-AGGAAAAATCAC------AGCTGAGGCCACCTCA---------AGGCC-ATGACAGGGTTAGGGAGC---------TCGAAGCCAGCCTGGACA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113449 310 + 182113224 CAAGTCGGT-GATAAGAAGGAACTTCCAGAAGGCCCTACCCTCTCA---------------------CTCAGCCCATTATGGACAAGACAGAA---GCAAC-TCTCTCCCCAGACCCAACTCTGG---TGGG-------------------------CATGTCCACCAGGCCTCACCAATCACACAGAACGGCTTCCTGGCAAACTTGAGCCTGCCCCTCCAGCCTCGATACCGGCAACAGCAGCCTGCAGCCCAGATCCTCACAAAGTACTCAACACCGAATACCACGATAGTCACGATTTCCTGG-GAGGTGGG--AGGAACACGGATGAGGACACTATC---------AGGCCTTAG---------GAGGGC---------------TTCCTCTATA-- i mm10.chr2 C 0 C 0 s canFam3.chr24 47088054 248 + 47698779 CGGGGCGGGGGGGGGGGGG----TTCCAG-AGCAGCCG--GTC-----------------------------------------------------ACCCC--------------------------------------------------------CGCGCCCGCCCCGCCTCACCTATCACACAGAAGGGCTTGCGCGCAAACTTGAGCCGACCCCTCCAGCCGCGGTACCGGCAGCAGCAGCCCGCCGCCCAGATGCGCACAAAGTACTCCACGCCGAACACCACGATGGTCACGATTTCCTGC-AGGAGAGG--CC------A-CGGCCACCACCCCC---------AGGCC-GGGTCAGGGC---AGGGA---------------CCAGGCCGGCCA i canFam3.chr24 I 2 I 11 s dasNov3.JH567899 116805 360 + 555560 CGGGAGTGGAGGTCA-AGGGCGTCTGCAGCCCGGCCCA--GCCCCG---------------------TTCAGGCCGCGCTGACC---GCAGGCACTGGCCCCGGGCCAGCGGGCGAGGAGCCT---CCCGGGCCCCT---CCCACCCCCGCGCACACCCCACCCCTCAGG-CTCACCGATGACGCAGAAGGGCTTCCGGGCGAACTTGAGCCGCCCCCGCCAGCCGCGGTACCGGCAGCAGCAACCGGCCGCCCAGATGCGCACAAAGTACTCCACGCCGAAGACCACGATGGTGACGATTTCCTGCGACGGGAAC--AC------AGCTGAgggcggcgcgcggggccccagggcggcgggcAGCCCTCATGGCGGAGCCGCGCCCGCACCAGCGTGGCCG i dasNov3.JH567899 C 0 C 0 a score=349180.000000 s hg38.chr20_KI270871v1_alt 31552 30 + 58661 CCCACAGGAGCAGTTCTGGCCCAGGGACCA s panTro5.chr20 65604915 30 + 66533130 CCCACAGGAGCAGTTCTGGCCCAGGGACCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369150 30 + 62195757 CCCACAGGAGCAGTTCTGGCCCAGGGACCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781355 30 - 1017659 CCCACAGGAGCAGTTCTGGCCCAGGGACCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109271872 30 - 110113093 CCCACAGGGGCAGTTCTGGCCCGGGGACCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990635 30 - 92844088 CCCACAGGGGCAGTTCTGGCCCAAGGACCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640349 30 + 96509753 CCCACAGGGGCAGTTCTGGCCCAAGGACCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092573 30 - 16982598 CCCACAGGGGCAGTTCTGGCCCAAGGACCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937064 30 - 3785965 CCCACAGGGGCAGTTCTGGCCCAGGGACCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608256 30 - 90373283 CCCACAGGGGCAGTTCTGGCCCAGGGACCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485769 30 + 6149316 CCCACAGGGGCAGTTCTGGCCCAGGGACCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717812 30 - 5823884 CCCACAGGGGCAGTTCTGGCCCAGGGACCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426758 30 + 159171411 CCCACAGGGGCTGTTCTGGCCCAGAGACCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547156 30 + 16356641 CCCACAGGGGCCGCTCTGGCCCAGAGACCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 394003 30 + 1231380 CCCACAGGGGCCGTTCTGGCCCAGAGACCA i cebCap1.NW_016107870v1 C 0 I 26 s aotNan1.NW_018500483v1 1954533 30 + 11732439 CCCACAGGGGCCGTTCTGGCCCAGAGACCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170797 30 + 22939663 CCCACACAGGTCACTCCAGCCCAGGAACCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113759 28 + 182113224 -CTACATGA-CACTTTCGGGACAGGGATGG i mm10.chr2 C 0 I 4 s dasNov3.JH567899 117165 27 + 555560 CTCGCTCAGCCAGCAC---CCCAGGGCCTG i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47088302 11 + 47698779 I a score=431234.000000 s hg38.chr20_KI270871v1_alt 31582 61 + 58661 ---AGCCACAGGG-CAGGAGGCCCCCAAAGGAAACTGCAAG------CTGACCCCCCAAAGGGCCCCCACC s panTro5.chr20 65604945 60 + 66533130 ---AGCCACAGGG-CAGGAGGCCCCCAAAGGAAACTGCAAG------CTGA-CCCCCAAAGGGCCCCCACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369180 60 + 62195757 ---AGCCACAGGG-CAGGAGGCCCCCAAAGGAAACTGCAAG------CTGA-CCCCCAAAGGGCCCCCACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781385 60 - 1017659 ---AGCCACAGGG-CAGGAAGCCCCCAAAGGAAACTGCAAG------CTGA-CCCCCAAAGGGACCCCACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109271902 66 - 110113093 ---AGCCACAGGG-CAGGAGGCCCCCAGTGGAAACTGCAAGCTTTGACTGA-CCCCCAAAGGGCCCCCACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990665 66 - 92844088 ---AGCCGCAGGA-CAGGAGGCCCCCAAAGGAAACTGCAAGCTTGGACTGA-CCCACACAGGGCCCCCATC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640379 66 + 96509753 ---AGCCGCAGGA-CAGGAGGCCCCCAAAGGAAACTGCAAGCTTGGACTGA-CCCACACAGGGCCCCCATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092603 66 - 16982598 ---AGCCGCAGGA-CAGGAGGCCCCCAAAGGAAACTGCAAGCTTGGACTGA-CCCACACAGGGCCCCCATC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937094 66 - 3785965 ---AGCCGCAGGA-CAGGAGGCCCCCAAAGGAAACTGCAAGCTTGGACTGA-CCCACACAGGGCCCCCATC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608286 66 - 90373283 ---AGCTGCAGGA-CAGGAGGCCCCCAAAGGAAACTGCAAGCTTGGACTGA-CCCACACAGGGCTCCCACT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485799 66 + 6149316 ---AGCCGCAGGA-CAGGAGGCCCCCAAAGGAAACTGCAAGCTTGGACTGA-CCCACACAGGGCCCCCATC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717842 65 - 5823884 ---AGCCACAGGG-CAGGAGGCCCCCAAAAGAACCTGC-AGCTTAGACTGA-CCCACACAGGGCCCCCACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426788 49 + 159171411 ---GGCCACAGGG-CCGGAGGCCCCCACAGGAAACTGCAAGCTTAGCCCGA-CC----------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547186 49 + 16356641 ---GGCCACGGGA-CCGGAGGCCCCCACGGGAAACTGCAAGCTTAGCCCGA-CC----------------- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954563 49 + 11732439 ---GGCCACAGGG-CTGGAGGCCCCCACGGGAAACTGCAAGCTTAGCCCCA-CC----------------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170827 49 + 22939663 ---AGTAACAGTG-CAGGAGACCCCAAATGGTAACTACAAGATGGGCCCAA-CC----------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113791 67 + 182113224 ---AGCCCCAGGGATCAGATGCTAGAAATCAGACCTTCAGGCTTAGCTCAA-ACCCCACAGGGCACCTAGC i mm10.chr2 I 4 C 0 s dasNov3.JH567899 117192 56 + 555560 CTCAGCCGGGCGC-CCAGAACACCCCCAGG----CCACGGGCT--GCCCGC-CCCAC-------CCCCACT i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 394033 26 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I a score=420630.000000 s hg38.chr20_KI270871v1_alt 31643 48 + 58661 -------------CCTCTCCAGCCTCTGGGCAGGAAGGGTTGGGCCCT--CTGGAGAC-CCTGC s panTro5.chr20 65605005 48 + 66533130 -------------CCTCTCCAGCCTCTAGGCAGGAAGGGTTGGGCCCT--CTGGAGAC-CCTGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369240 48 + 62195757 -------------CCTCTCCAGCCTCTAGGCAGGAAGGGTTGGGCCCT--CTGGAGAC-CCTGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781445 48 - 1017659 -------------CCTCTCCAGCTTCTGGGCAGGAAGGGTTGGGCCCT--CTGGAGAC-CCTGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109271968 48 - 110113093 -------------CCTCTCCAGCTTCTGGGCAGGAAGGGTTGGGCCCT--CTGGAGGC-CCTGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990731 48 - 92844088 -------------CCTCTCTAGCCTCTGGGCAGCAAGGTTTAGGCCCT--CTGGAGAC-CGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640445 48 + 96509753 -------------CCTCCCTAGCCTCTGGGCAGCAAGGTTTAGGCCCT--CTGGAGAC-CGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092669 48 - 16982598 -------------CCTCTCTAGACTCTGGGCAGCAAGGTTTAGGCCCT--CTGGAGAC-CGTGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937160 48 - 3785965 -------------CCTCTCTAGCCTCTGGGCAGCAAGGGTTAGGCCCT--CTGGAGAC-CGTGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608352 48 - 90373283 -------------CCTCTCCAGCCTCTAGGCAGCAAGGGTTGGGCCCT--CTGGAGAC-CGTGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485865 48 + 6149316 -------------CCTCTCTAGCCTCTGGGCAGAAAGGGTTAGGCCCT--CTGGAGAC-CGTGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717907 48 - 5823884 -------------CCTCTCCGGCCTCTGGGCAGCAAGGGTTGGGCCCT--CTGGAGAC-CGTGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426837 48 + 159171411 -------------CCTCTCCAGCCTCTGGGCAGGACGGGTTGGGCCCT--CTGGGGTC-CCTGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547235 48 + 16356641 -------------CCTCTCCAGCCTCTGCACAGGACGGGTTGGACCCT--CTGGGGTC-CCTGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 394059 48 + 1231380 -------------CCTCTCTAGCCTCTAGGCAGGACGGGTTGGGCCCT--CTGGGGTC-CCTGA i cebCap1.NW_016107870v1 I 26 C 0 s aotNan1.NW_018500483v1 1954612 48 + 11732439 -------------CCTCTCCAGCCTCTGGGCAGGACGGGTTGGGCCCT--CTGGGATC-CCTGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170876 28 + 22939663 -------------CCT-------------GCAGAATGG--------CT--CTGAGAATGTCTGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113858 39 + 182113224 ------------------------TCATGTCAGCCAGGATTGAATCCCTGCTAGAAAC-AGACC i mm10.chr2 C 0 C 0 s dasNov3.JH567899 117248 51 + 555560 CAGTCGCCGTGACGCCCCCCACCCCCCGCGCCGT----------CCCT--CGGGGGAC-CCCAC i dasNov3.JH567899 C 0 I 931 e canFam3.chr24 47088302 11 + 47698779 I a score=444442.000000 s hg38.chr20_KI270871v1_alt 31691 61 + 58661 AT-CCGGGAAC--ACAGCTG------------AGCATGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGAG s panTro5.chr20 65605053 61 + 66533130 AT-CCGGGAAC--ACAGCTG------------GGCATGAGCACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369288 61 + 62195757 AT-CCGGGAAC--ACAGCTG------------GGCATGAGCACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781493 61 - 1017659 AT-CCTGGAAC--ACAGCTG------------AGCATGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272016 61 - 110113093 AT-CCGGGGAC--ACAGCTG------------AGCAGGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990779 61 - 92844088 AT-CCGGGAAC--ACAGCTG------------AGCACGAACACCAT----GGGGCCA-CCTTCCCCACCTCCCTGTCTGCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640493 61 + 96509753 AT-CCGGGAAC--ACAGCTG------------AGCACGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092717 61 - 16982598 AT-CCAGGAAC--ACAGCTG------------AGCACGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937208 61 - 3785965 AA-CCGGGAAC--ACAGCTG------------AGCACGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608400 61 - 90373283 AT-CCAGGAAC--ACAGCTG------------AGTACGAACACCAC----GGGGCCA-CCCTCCCCACCTCCCTGTCTGCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485913 62 + 6149316 ATCCCGGGAAC--ACAGCTG------------AGCACGAACACCAT----GGGGCCA-CCCTCCCCACCTCCCTGTCTGCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4717955 60 - 5823884 AT-CCGGGAAC--ACAGCTG------------AGTACCA--ACCAT----GGGGCCATCCCCCCCCACCTCCCTGTCTGCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426885 36 + 159171411 AT-CCAGG-------------------------------------------GGGCCA-CCCTCCCCCCATCCCTGTCTGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547283 45 + 16356641 AT-CCAGGAAC------------------------------ACCAC----AGGGTCA-CCCTCCCCCAATCCCTGTCTGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 394107 45 + 1231380 AT-CCAGGAAC------------------------------ACCAC----GGGGTCA-CCCTCCCCCCATCCCTGTCTGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954660 45 + 11732439 GT-CCAGGAAC------------------------------ACCAT----GGGGCCA-CCCTCCCCCCATCCCTGTCTGAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170904 46 + 22939663 GC-CTGATGAC-----------------------------TACTGG----GGATCCA-CCCACTTCACCCCTCTGTCTGAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113897 78 + 182113224 CT-CCAGGGACTTACTGCTGCCAGCAAGTCCTGGCCTGTAGACCACCAGAGGAACCC-CCCTTCTCACCGCCCT-TCTGAG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e canFam3.chr24 47088302 11 + 47698779 I a score=25976.000000 s hg38.chr20_KI270871v1_alt 31752 2 + 58661 CT s panTro5.chr20 65605114 2 + 66533130 CT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369349 2 + 62195757 CT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781554 2 - 1017659 CT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272077 2 - 110113093 CT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990840 2 - 92844088 CT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640554 2 + 96509753 CT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092778 2 - 16982598 CT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937269 2 - 3785965 CT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608461 2 - 90373283 CT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485975 2 + 6149316 CT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718015 2 - 5823884 CT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426921 2 + 159171411 CT i calJac3.chr5 C 0 I 3 s saiBol1.JH378156 15547328 2 + 16356641 CT i saiBol1.JH378156 C 0 I 3 s cebCap1.NW_016107870v1 394152 2 + 1231380 CT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954705 2 + 11732439 CT i aotNan1.NW_018500483v1 C 0 I 3 s mm10.chr2 181113975 2 + 182113224 CT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e canFam3.chr24 47088302 11 + 47698779 I e otoGar3.GL873542 22170950 0 + 22939663 C a score=67916.000000 s hg38.chr20_KI270871v1_alt 31754 7 + 58661 GGGGACT s panTro5.chr20 65605116 7 + 66533130 GGGGACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369351 7 + 62195757 GGGGACT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781556 7 - 1017659 GGGGACT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272079 7 - 110113093 GAGGGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990842 7 - 92844088 GGGGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640556 7 + 96509753 GGGGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092780 7 - 16982598 GGGGGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937271 7 - 3785965 GGGGGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608463 2 - 90373283 G-----T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485977 7 + 6149316 GGGGGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718017 7 - 5823884 GGGGACT i colAng1.NW_012114444v1 C 0 T 20 s calJac3.chr5 57426926 7 + 159171411 GGGGGCT i calJac3.chr5 I 3 C 0 s saiBol1.JH378156 15547333 7 + 16356641 GGGGGCT i saiBol1.JH378156 I 3 C 0 s cebCap1.NW_016107870v1 394154 7 + 1231380 GGGGGCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954710 7 + 11732439 GGGGGCT i aotNan1.NW_018500483v1 I 3 C 0 s otoGar3.GL873542 22170950 7 + 22939663 GGGGGCT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181113977 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I a score=32010.000000 s hg38.chr20_KI270871v1_alt 31761 3 + 58661 CTA s panTro5.chr20 65605123 3 + 66533130 CTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369358 3 + 62195757 CTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781563 3 - 1017659 CTA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272086 3 - 110113093 CTA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990849 3 - 92844088 CTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640563 3 + 96509753 CTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092787 3 - 16982598 CTA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937278 3 - 3785965 CTA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608465 3 - 90373283 CTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485984 3 + 6149316 CTA i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57426933 3 + 159171411 CTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547340 3 + 16356641 CTA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 394161 3 + 1231380 CTA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954717 3 + 11732439 CTA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170957 3 + 22939663 CTG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181113977 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e colAng1.NW_012114444v1 4718024 20 - 5823884 T a score=84027.000000 s hg38.chr20_KI270871v1_alt 31764 14 + 58661 TCCGGGCTAG---GGGA s panTro5.chr20 65605126 14 + 66533130 TCCAGGCTAG---GGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369361 14 + 62195757 TCCAGGCTAG---GGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781566 14 - 1017659 TCCGGGCTAG---GGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272089 14 - 110113093 TCTGGGATAG---GGAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91990852 14 - 92844088 TCTGAGCTAG---GGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640566 14 + 96509753 TCTGAGCTAG---GGGA i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937281 14 - 3785965 TCTGGGCTAG---GGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608468 14 - 90373283 TCTGGGCTAG---GGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5485987 14 + 6149316 TCTGGGCTAG---GGGA i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57426936 17 + 159171411 TCTGAGCTGGAATAGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547343 17 + 16356641 TCTGAGCTGGAATGGGA i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954720 17 + 11732439 TCTGAGCTAGAATGGGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170960 14 + 22939663 TTTGAGCTGG---GGGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113977 11 + 182113224 ---GGATTGG---GAGG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e colAng1.NW_012114444v1 4718024 20 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=67959.000000 s hg38.chr20_KI270871v1_alt 31778 12 + 58661 -CCCTGTCTGAGC s panTro5.chr20 65605140 12 + 66533130 -CCCTGTCTGAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369375 12 + 62195757 -CCCCGTCTGAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781580 12 - 1017659 -CCCTGTCTGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91990866 12 - 92844088 -CCCTGTCTGAAC i rheMac8.chr10 C 0 I 138 s macFas5.chr10 95640580 12 + 96509753 -CCCTGTCTGAAC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937295 12 - 3785965 -CCCTGTCTGAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608482 12 - 90373283 -CCCTGTCTGAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486001 12 + 6149316 -CCCTGTCTGAAC i manLeu1.NW_012104365v1 C 0 I 1 s calJac3.chr5 57426953 12 + 159171411 -GCCTGTCTGAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547360 12 + 16356641 -GCTTGTCTGAGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954737 12 + 11732439 -GCCTGTCTGAGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170974 12 + 22939663 -CCTTGTCTAAAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181113988 12 + 182113224 CTCTAGTGTCAG- i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e colAng1.NW_012114444v1 4718024 20 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=2159.000000 s hg38.chr20_KI270871v1_alt 31790 6 + 58661 TGTGGG s panTro5.chr20 65605152 6 + 66533130 TGTGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369387 6 + 62195757 TGTGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781592 5 - 1017659 TGT-GG i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95640592 4 + 96509753 --GGGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937307 2 - 3785965 ----GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608494 6 - 90373283 TGTAGG i chlSab2.chr2 C 0 C 0 s calJac3.chr5 57426965 6 + 159171411 TGTGGG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15547372 6 + 16356641 TTTGCG i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1954749 5 + 11732439 TG-GGG i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22170986 2 + 22939663 TG---- i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181114000 6 + 182113224 TGTGAG i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486013 1 + 6149316 I e colAng1.NW_012114444v1 4718024 20 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C e rheMac8.chr10 91990878 138 - 92844088 I a score=12750.000000 s hg38.chr20_KI270871v1_alt 31796 4 + 58661 GGGT s panTro5.chr20 65605158 4 + 66533130 GGGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369393 4 + 62195757 GGGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781597 4 - 1017659 GGGT i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95640596 3 + 96509753 GGG- i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937309 3 - 3785965 GGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608500 4 - 90373283 GGGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486014 4 + 6149316 GGGG i manLeu1.NW_012104365v1 I 1 C 0 s calJac3.chr5 57426972 4 + 159171411 GGGT i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15547379 4 + 16356641 GGGT i saiBol1.JH378156 I 1 C 0 s aotNan1.NW_018500483v1 1954755 4 + 11732439 GGGT i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22170989 3 + 22939663 GGG- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181114006 4 + 182113224 GGGT i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e colAng1.NW_012114444v1 4718024 20 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C e rheMac8.chr10 91990878 138 - 92844088 I a score=12640.000000 s hg38.chr20_KI270871v1_alt 31800 2 + 58661 GG s panTro5.chr20 65605162 2 + 66533130 GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369397 2 + 62195757 GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781601 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991016 2 - 92844088 GG i rheMac8.chr10 I 138 C 0 s cerAty1.NW_012001373v1 2937312 2 - 3785965 GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608504 1 - 90373283 -G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486018 1 + 6149316 -G i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57426976 2 + 159171411 GG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547383 2 + 16356641 GG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954759 2 + 11732439 GG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170992 2 + 22939663 GG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114010 2 + 182113224 GG i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e colAng1.NW_012114444v1 4718024 20 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C e macFas5.chr10 95640599 0 + 96509753 C a score=-3130.000000 s hg38.chr20_KI270871v1_alt 31802 1 + 58661 -C s panTro5.chr20 65605164 1 + 66533130 -C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369399 1 + 62195757 -C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781603 1 - 1017659 -C i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991018 1 - 92844088 -C i rheMac8.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937314 1 - 3785965 -C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608505 1 - 90373283 -G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486019 1 + 6149316 -G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718004 1 - 5823884 -C i colAng1.NW_012114444v1 T 20 C 0 s calJac3.chr5 57426978 1 + 159171411 -C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547385 1 + 16356641 -C i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954761 1 + 11732439 -C i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170994 1 + 22939663 -C i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114012 1 + 182113224 G- i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C e macFas5.chr10 95640599 0 + 96509753 C a score=9100.000000 s hg38.chr20_KI270871v1_alt 31803 1 + 58661 C s panTro5.chr20 65605165 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369400 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781604 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991019 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640599 1 + 96509753 C i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937315 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608506 1 - 90373283 C i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5486020 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718005 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426979 1 + 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547386 1 + 16356641 C i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954762 1 + 11732439 C i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170995 1 + 22939663 C i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=28224.000000 s hg38.chr20_KI270871v1_alt 31804 4 + 58661 CTGT s panTro5.chr20 65605166 4 + 66533130 CTGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369401 4 + 62195757 CTGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781605 4 - 1017659 CTGT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991020 4 - 92844088 CTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640600 4 + 96509753 CTGT i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937316 4 - 3785965 CTGT i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486021 4 + 6149316 CTGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718006 4 - 5823884 CTGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426980 4 + 159171411 CTAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547387 4 + 16356641 CTGT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954763 4 + 11732439 CTGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170996 4 + 22939663 CTGT i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e chlSab2.chr2 89608507 1 - 90373283 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=55425.000000 s hg38.chr20_KI270871v1_alt 31808 7 + 58661 CTGAGCT s panTro5.chr20 65605170 7 + 66533130 CTAAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369405 7 + 62195757 CTAAGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781609 7 - 1017659 CTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991024 7 - 92844088 CTGAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640604 7 + 96509753 CTGAGCT i macFas5.chr10 C 0 I 1 s cerAty1.NW_012001373v1 2937320 7 - 3785965 CTGAGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608508 7 - 90373283 CTGAGCT i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5486025 7 + 6149316 CTGAGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718010 7 - 5823884 CTGCGCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426984 7 + 159171411 CTGAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547391 7 + 16356641 CTGAGCT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954767 7 + 11732439 CTGAGCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171000 7 + 22939663 CTGAGCT i otoGar3.GL873542 C 0 T 57 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=39657.000000 s hg38.chr20_KI270871v1_alt 31815 6 + 58661 GGGGGA s panTro5.chr20 65605177 6 + 66533130 GGGGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369412 6 + 62195757 GGGGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781616 6 - 1017659 GGGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991031 6 - 92844088 GGGGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640612 6 + 96509753 GGGGGC i macFas5.chr10 I 1 C 0 s cerAty1.NW_012001373v1 2937327 5 - 3785965 -GGGGC i cerAty1.NW_012001373v1 C 0 I 74 s chlSab2.chr2 89608515 6 - 90373283 GGGGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486032 6 + 6149316 GGGGGG i manLeu1.NW_012104365v1 C 0 I 37 s colAng1.NW_012114444v1 4718017 6 - 5823884 GGGGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426991 6 + 159171411 GGGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547398 6 + 16356641 GGGGGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954774 6 + 11732439 GGGGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170950 6 + 22939663 GGGGGC i otoGar3.GL873542 T 57 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=72193.000000 s hg38.chr20_KI270871v1_alt 31821 15 + 58661 TCTATCTGGGCTAGG s panTro5.chr20 65605183 15 + 66533130 TCTATCTGGGCTAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369418 15 + 62195757 TCTATCTGGGCTAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781622 15 - 1017659 TCTATCTGGGCTAGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991037 15 - 92844088 CCTGTCTGAGCTGGG i rheMac8.chr10 C 0 I 19 s macFas5.chr10 95640618 15 + 96509753 CCTGTCTGAGCTGGG i macFas5.chr10 C 0 C 0 s chlSab2.chr2 89608521 15 - 90373283 TCTATCTGGCCTAGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4718023 15 - 5823884 TCTGTCTGGGCTGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57426997 15 + 159171411 TCTGTCTGGGCTAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547404 15 + 16356641 TCTATCTGAGCTGTG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1954780 15 + 11732439 CCTATCTGAGCTGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170956 15 + 22939663 TCTGTTTGAGCTGGG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486038 37 + 6149316 I e cerAty1.NW_012001373v1 2937332 74 - 3785965 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=10293.000000 s hg38.chr20_KI270871v1_alt 31836 2 + 58661 GG s panTro5.chr20 65605198 2 + 66533130 GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369433 2 + 62195757 GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781637 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991071 2 - 92844088 GG i rheMac8.chr10 I 19 C 0 s macFas5.chr10 95640633 2 + 96509753 GC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937406 2 - 3785965 GG i cerAty1.NW_012001373v1 I 74 C 0 s chlSab2.chr2 89608536 2 - 90373283 GA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4718038 2 - 5823884 GA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427012 2 + 159171411 GG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15547419 2 + 16356641 GG i saiBol1.JH378156 C 0 M 1521 s aotNan1.NW_018500483v1 1954795 2 + 11732439 GG i aotNan1.NW_018500483v1 C 0 I 2 s otoGar3.GL873542 22170971 2 + 22939663 GG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486038 37 + 6149316 I e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=65841.000000 s hg38.chr20_KI270871v1_alt 31838 20 + 58661 ACCATGTCTGAGCTGGGA-G-G- s panTro5.chr20 65605200 20 + 66533130 ACCATGTCTGAGCTGGGA-G-G- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369435 20 + 62195757 ACCATGTCTGAGCTGGGA-G-G- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781639 20 - 1017659 ACCATGTCTGAGCTGGGA-G-G- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991073 18 - 92844088 GCCCTGTCTGAGCTGGG--G--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640635 20 + 96509753 ACCCTGTCTGAACGGGGGAG--- i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937408 19 - 3785965 GCCCTGTCTGAGCTGGAG-G--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608538 19 - 90373283 ACCCTGTCTGAGCTGGGG-G--- i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4718040 20 - 5823884 ACCCTGTCTGAGCTGGGG-GG-- i colAng1.NW_012114444v1 C 0 T 43 s calJac3.chr5 57427014 19 + 159171411 ACCCTGTCTGAGCTAGGG-G--- i calJac3.chr5 C 0 I 1 s aotNan1.NW_018500483v1 1954799 19 + 11732439 ACCCTGTCTGAGCTGGGG-G--- i aotNan1.NW_018500483v1 I 2 I 1 s otoGar3.GL873542 22170973 20 + 22939663 ACCTTGTCTAAACTGGGG-G--G i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486038 37 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=-620.000000 s hg38.chr20_KI270871v1_alt 31858 3 + 58661 GCT s panTro5.chr20 65605220 3 + 66533130 GCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369455 3 + 62195757 GCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781659 3 - 1017659 GCT i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57427034 2 + 159171411 -CT i calJac3.chr5 I 1 C 0 s aotNan1.NW_018500483v1 1954819 1 + 11732439 --G i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22170993 2 + 22939663 GC- i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486038 37 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718060 43 - 5823884 T e chlSab2.chr2 89608557 0 - 90373283 C e cerAty1.NW_012001373v1 2937427 0 - 3785965 C e macNem1.NW_012014244v1 16092790 0 - 16982598 C e macFas5.chr10 95640655 0 + 96509753 C e rheMac8.chr10 91991091 0 - 92844088 C a score=39902.000000 s hg38.chr20_KI270871v1_alt 31861 7 + 58661 GCCCTGT s panTro5.chr20 65605223 7 + 66533130 GCCCTGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369458 7 + 62195757 GCCCTGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781662 7 - 1017659 GCCCTGT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991091 7 - 92844088 GCCCTGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640655 7 + 96509753 GGCCTGT i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937427 7 - 3785965 GCCCTGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608557 7 - 90373283 GCCCTGT i chlSab2.chr2 C 0 T 56 s manLeu1.NW_012104365v1 5486075 7 + 6149316 GCCCTGT i manLeu1.NW_012104365v1 I 37 C 0 s calJac3.chr5 57427036 7 + 159171411 GCCCTGT i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954820 7 + 11732439 GCCCTGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170995 5 + 22939663 --CCTGT i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718060 43 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=44418.000000 s hg38.chr20_KI270871v1_alt 31868 7 + 58661 CTGAGCT s panTro5.chr20 65605230 7 + 66533130 CTGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369465 7 + 62195757 CTGAGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781669 7 - 1017659 CTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991098 7 - 92844088 CTGAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640662 7 + 96509753 CTGAGCT i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937434 7 - 3785965 CTGAGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608508 7 - 90373283 CTGAGCT i chlSab2.chr2 T 56 C 0 s manLeu1.NW_012104365v1 5486082 7 + 6149316 CTGAGCT i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57427043 7 + 159171411 CTGAGCT i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954827 7 + 11732439 CTGAGCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171000 7 + 22939663 CTGAGCT i otoGar3.GL873542 C 0 T 58 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718060 43 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=21041.000000 s hg38.chr20_KI270871v1_alt 31875 20 + 58661 AGGGGGT------------------------------------------TCTATCTGGGCTA s panTro5.chr20 65605237 20 + 66533130 AGGGGGC------------------------------------------TCTATCTGGGCTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369472 20 + 62195757 AGGGGGC------------------------------------------TCTATCTGGGCTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781676 20 - 1017659 AGGGGGC------------------------------------------TCTATCTGGGCTA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991105 62 - 92844088 GGGGAGCCTGTCTGAGCTGGGGGGCCCTGTCTGAACTGGAGGCGTGGGGCCTGTCTGAGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640669 20 + 96509753 GGGGGGC------------------------------------------CCTGTCTGAGCTG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937441 20 - 3785965 GGGGGGC------------------------------------------CCTCTCCACGCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608515 18 - 90373283 GGG-GGC------------------------------------------TCTATCTG-GCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486089 20 + 6149316 GGGAGGC------------------------------------------CCTGTCTGCGCTG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57427050 7 + 159171411 GGGGGGC------------------------------------------------------- i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954834 6 + 11732439 GGGGGA-------------------------------------------------------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170949 20 + 22939663 AGGGGGC------------------------------------------TCTGTTTGAGCTG i otoGar3.GL873542 T 58 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718060 43 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=-11858.000000 s hg38.chr20_KI270871v1_alt 31895 4 + 58661 GG-------------------GA s panTro5.chr20 65605257 4 + 66533130 GG-------------------GA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369492 4 + 62195757 GG-------------------GA i panPan2.chr20 C 0 I 17 s gorGor5.CYUI01015750v1 781696 4 - 1017659 GG-------------------GA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991167 23 - 92844088 GGGGGCCTGTCTGAGCTGTGTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640689 4 + 96509753 GG-------------------GG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937461 4 - 3785965 GG-------------------GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608533 5 - 90373283 AGG------------------GA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486109 5 + 6149316 GGG------------------GG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718017 4 - 5823884 GG-------------------GG i colAng1.NW_012114444v1 T 43 C 0 s calJac3.chr5 57427057 1 + 159171411 ---------------------T- i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954840 1 + 11732439 ---------------------G- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170969 4 + 22939663 GG-------------------GG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=94893.000000 s hg38.chr20_KI270871v1_alt 31899 18 + 58661 ACCCTGTCTGAGCTGGGA s panTro5.chr20 65605261 18 + 66533130 ACCCTGTCTGAGCTGGGA i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781700 18 - 1017659 ACCCTGTCTGAGCTGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991190 18 - 92844088 GCCCTGTCTGAGCTGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640693 18 + 96509753 GCCCTGTCTGAGCTGGGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937465 18 - 3785965 GCCCTGTCTGAGCTGGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608538 18 - 90373283 ACCCTGTCTGAGCTGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486114 18 + 6149316 GTCCTGTCTGAGCTGGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718021 18 - 5823884 ACTCTGTCTGGGCTGGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427058 18 + 159171411 TCCCTGTCTGAGCTGGGG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954841 18 + 11732439 ACCCTGTCTGAGCTGGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170973 18 + 22939663 ACCTTGTCTAAACTGGGG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e macNem1.NW_012014244v1 16092790 0 - 16982598 C e panPan2.chr20 61369496 17 + 62195757 I a score=119023.000000 s hg38.chr20_KI270871v1_alt 31917 26 + 58661 -GG--CCCTGTCTGAGCTG--GGAGACCCTG s panTro5.chr20 65605279 26 + 66533130 -GA--CCCTGTCTGAGCTG--GGAGGCCCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369513 26 + 62195757 -GA--CCCTGTCTGAGCTG--GGAGGCCCTG i panPan2.chr20 I 17 C 0 s gorGor5.CYUI01015750v1 781718 26 - 1017659 -GG--CCCTGTCTGAGCTG--GGAGGCCCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991208 26 - 92844088 -GG--CCCTGTCTGCACTG--GGGGGCCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640711 26 + 96509753 -GG--CCCTATCTGCACTG--GGGGGCCCTG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937483 26 - 3785965 -GG---CCTGTCTGAGCTG-TGTGGGCCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608556 26 - 90373283 -GG--CCCTGTCTGAGCTG--GGGGGCCCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486132 26 + 6149316 -GG---CCTGTCTGAGCTG-TGTGGGCCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718039 26 - 5823884 -AA--CCCTGTCTGAGCTG--GGGGGCCCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427076 28 + 159171411 -GA--CTCTATCTGATCTGGGGGGGGCCCTC i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954859 30 + 11732439 -GAGGCCCTGTCTGAGCTGGGGGAGACCCTG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170991 27 + 22939663 GGG--CCCTGTCTGAGCTG--GAAGAGGCTG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394164 0 + 1231380 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=58435.000000 s hg38.chr20_KI270871v1_alt 31943 8 + 58661 TCTGAGC--T s panTro5.chr20 65605305 8 + 66533130 TCTGAGC--T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369539 8 + 62195757 TCTGAGC--T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781744 8 - 1017659 TCTGAGC--T i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991234 8 - 92844088 TCTGAGC--T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640737 8 + 96509753 TCTGAGC--T i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937509 8 - 3785965 TCTGAGC--T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608582 8 - 90373283 TCTGAGC--T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486158 8 + 6149316 TCTGAGC--T i manLeu1.NW_012104365v1 C 0 T 153 s colAng1.NW_012114444v1 4718065 8 - 5823884 TCTGAAC--T i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427104 8 + 159171411 TCTGAGC--T i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394164 10 + 1231380 TCTGAGCTGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954889 8 + 11732439 TCTGAGC--T i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171018 8 + 22939663 TTTAAGC--T i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=1080.000000 s hg38.chr20_KI270871v1_alt 31951 1 + 58661 -G s panTro5.chr20 65605313 1 + 66533130 -G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369547 1 + 62195757 -G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781752 1 - 1017659 -G i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991242 1 - 92844088 -G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640745 1 + 96509753 -G i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937517 1 - 3785965 -G i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486013 1 + 6149316 -G i manLeu1.NW_012104365v1 T 153 C 0 s colAng1.NW_012114444v1 4718073 1 - 5823884 -G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427112 1 + 159171411 -G i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394174 1 + 1231380 -G i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954897 1 + 11732439 -G i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171026 1 + 22939663 T- i otoGar3.GL873542 C 0 T 77 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608590 0 - 90373283 C e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=-957.000000 s hg38.chr20_KI270871v1_alt 31952 3 + 58661 GG--------------------A s panTro5.chr20 65605314 3 + 66533130 GG--------------------A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369548 3 + 62195757 TG--------------------G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781753 3 - 1017659 GG--------------------A i gorGor5.CYUI01015750v1 C 0 T 19 s rheMac8.chr10 91991243 23 - 92844088 GGAGGCCCCGTCTGAACTGTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640746 2 + 96509753 G---------------------G i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2937518 3 - 3785965 GG--------------------G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608590 3 - 90373283 GG--------------------G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486014 3 + 6149316 GG--------------------G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718074 3 - 5823884 GG--------------------G i colAng1.NW_012114444v1 C 0 T 56 s calJac3.chr5 57427113 3 + 159171411 GG--------------------A i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394175 3 + 1231380 GG--------------------A i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954898 3 + 11732439 GG--------------------G i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170950 3 + 22939663 GG--------------------G i otoGar3.GL873542 T 77 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=118835.000000 s hg38.chr20_KI270871v1_alt 31955 26 + 58661 G---------------------------GCC---CTGTCTGAGCTGGGGGA--CCCTG s panTro5.chr20 65605317 26 + 66533130 G---------------------------GCC---CTGTCTGAGCTGGGGAA--CACTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369551 53 + 62195757 GGAGCCTGTCTGAGTTGGTTGGGGAGCTGCC---CTGTCCGAGCTGGGGGA--CTCTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781737 26 - 1017659 G---------------------------GCC---CTGTCTGAGCTGGGAGA--CCCTG i gorGor5.CYUI01015750v1 T 19 C 0 s rheMac8.chr10 91991266 25 - 92844088 G---------------------------GCC---CTGTCTGAGCTGG-GGG--CCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640748 25 + 96509753 G---------------------------GCC---CTGTCTGAGCTGG-GGG--GCCTG i macFas5.chr10 C 0 I 12 s cerAty1.NW_012001373v1 2937521 26 - 3785965 G---------------------------GCC---CTGTCTGAGCTGGAGGG--CCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608593 26 - 90373283 G---------------------------GGC---CTGTCTGAACTGGGGGG--CCCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486017 26 + 6149316 G---------------------------GGC---CTGTCTGAGCTGGGGGG--CCCTG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57427116 26 + 159171411 G---------------------------GCC---CTGTCTGAGCTGGGGGA--CCCTG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394178 29 + 1231380 G---------------------------GCCTGTCTGTCTGAGCTGGGGGA--CCCTG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954901 27 + 11732439 G---------------------------GT----CTATCTGAGCTGGGTGAGGCCCTG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170953 26 + 22939663 G---------------------------GCT---CTGTTTGAGCTGGGGGA--CCTTG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718077 56 - 5823884 T e macNem1.NW_012014244v1 16092790 0 - 16982598 C a score=55925.000000 s hg38.chr20_KI270871v1_alt 31981 8 + 58661 TCTGAGCT s panTro5.chr20 65605343 8 + 66533130 TCTGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369604 8 + 62195757 TCTGAGTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781763 8 - 1017659 TCTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991291 8 - 92844088 TCTGAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640785 8 + 96509753 TCTGAGCT i macFas5.chr10 I 12 C 0 s macNem1.NW_012014244v1 16092790 8 - 16982598 TCTGAGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937547 8 - 3785965 TCTGAGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608619 8 - 90373283 TCTGAGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486043 8 + 6149316 TCTGAATG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57427142 8 + 159171411 TGTGAGCT i calJac3.chr5 C 0 T 141 s cebCap1.NW_016107870v1 394207 8 + 1231380 TCTGAGCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1954928 8 + 11732439 TCTGAGCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22170979 8 + 22939663 TCTAAACT i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718077 56 - 5823884 T a score=40644.000000 s hg38.chr20_KI270871v1_alt 31989 5 + 58661 GGGGG s panTro5.chr20 65605351 5 + 66533130 GGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369612 5 + 62195757 GGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781771 5 - 1017659 GGGAG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991299 5 - 92844088 GGGGG i rheMac8.chr10 C 0 I 18 s macFas5.chr10 95640793 5 + 96509753 GGGGG i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16092798 5 - 16982598 AGGGG i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2937555 5 - 3785965 GGGGG i cerAty1.NW_012001373v1 C 0 I 57 s chlSab2.chr2 89608627 5 - 90373283 GGGGG i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5486051 5 + 6149316 GGGGG i manLeu1.NW_012104365v1 C 0 I 1 s calJac3.chr5 57427009 5 + 159171411 AGGGG i calJac3.chr5 T 141 C 0 s cebCap1.NW_016107870v1 394215 5 + 1231380 GGGGG i cebCap1.NW_016107870v1 C 0 I 16 s aotNan1.NW_018500483v1 1954936 5 + 11732439 GGGGG i aotNan1.NW_018500483v1 C 0 I 2 s otoGar3.GL873542 22170987 5 + 22939663 GGGGG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718077 56 - 5823884 T a score=83110.000000 s hg38.chr20_KI270871v1_alt 31994 14 + 58661 -ACCCTGTCTGAGCT s panTro5.chr20 65605356 14 + 66533130 -ACCCTGTCTGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369617 14 + 62195757 -CCCCTGTCTGAGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781776 14 - 1017659 -GCCCTGTCTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991322 14 - 92844088 -GCCCTGTCTGAGCT i rheMac8.chr10 I 18 C 0 s macFas5.chr10 95640799 12 + 96509753 ---CCTGTCTGAGCT i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16092804 13 - 16982598 --CCCTGTCTGAATG i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2937617 14 - 3785965 -GCCCTGTCTGAGCT i cerAty1.NW_012001373v1 I 57 C 0 s chlSab2.chr2 89608633 13 - 90373283 --CCCTGTCTGAGCT i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5486057 13 + 6149316 --GCCTGTCTGAGCT i manLeu1.NW_012104365v1 I 1 T 57 s colAng1.NW_012114444v1 4718021 14 - 5823884 -ACTCTGTCTGGGCT i colAng1.NW_012114444v1 T 56 C 0 s calJac3.chr5 57427014 14 + 159171411 -ACCCTGTCTGAGCT i calJac3.chr5 C 0 I 2 s aotNan1.NW_018500483v1 1954943 14 + 11732439 -GCCCTGTCTGAGCT i aotNan1.NW_018500483v1 I 2 I 2 s otoGar3.GL873542 22170992 15 + 22939663 GGCCCTGTCTGAGCT i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=101659.000000 s hg38.chr20_KI270871v1_alt 32008 18 + 58661 GGGG-GAC-CCTGTCTGAGC s panTro5.chr20 65605370 18 + 66533130 GGGA-GGC-CCTGTCTGAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369631 18 + 62195757 GGGG-GAC-CCTGTCTGAGC i panPan2.chr20 C 0 T 257 s gorGor5.CYUI01015750v1 781790 18 - 1017659 GGGG-GAC-CCTGTCTGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991336 17 - 92844088 -GGG-GGG-CCTGTCTGAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640811 17 + 96509753 -GGG-GGG-CCTGTCTGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092817 17 - 16982598 -GGG-GGG-CCTGTCTGAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937631 18 - 3785965 -GGG-GGGCCCTGTCTGAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608646 17 - 90373283 -GGG-AGG-CCTGTCTGAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486013 18 + 6149316 GGGG-GGG-CCTGTCTGAGC i manLeu1.NW_012104365v1 T 57 C 0 s colAng1.NW_012114444v1 4718035 18 - 5823884 GGGG-AAC-CCTGTCTGAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427030 19 + 159171411 GGGACTGC-CCTGTCTGAGC i calJac3.chr5 I 2 C 0 s aotNan1.NW_018500483v1 1954959 18 + 11732439 GGGA-GAC-CCTGTCTGAGC i aotNan1.NW_018500483v1 I 2 C 0 s otoGar3.GL873542 22171007 18 + 22939663 GGAA-GAG-GCTGTTTAAGC i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=7436.000000 s hg38.chr20_KI270871v1_alt 32026 2 + 58661 -TG s panTro5.chr20 65605388 2 + 66533130 -TG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369392 2 + 62195757 -GG i panPan2.chr20 T 257 C 0 s gorGor5.CYUI01015750v1 781808 2 - 1017659 -TG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991353 2 - 92844088 -TG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640828 2 + 96509753 -TG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092834 2 - 16982598 -TG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937649 2 - 3785965 -TG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608663 2 - 90373283 -TG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486031 2 + 6149316 -TG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718053 2 - 5823884 -TG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427049 2 + 159171411 -TG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954977 2 + 11732439 -TG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171025 2 + 22939663 TT- i otoGar3.GL873542 C 0 T 77 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=132397.000000 s hg38.chr20_KI270871v1_alt 32028 23 + 58661 GGAGG---CCCTGTCTGAGCTGGGG-------------------G s panTro5.chr20 65605390 23 + 66533130 GGAGG---CCCTGTCTGAGCTGGGG-------------------G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369394 23 + 62195757 GGTGG---CCCTGTCTAAGCTGGGG-------------------G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781810 23 - 1017659 GGAGA---CCCTGTCTGAGCTGGGG-------------------G i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991355 23 - 92844088 GGGGG---CCCTGTCTGAACTGGGG-------------------T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640830 22 + 96509753 GGGGG---CCCTGTCTGAGCTGGGG-------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092836 23 - 16982598 GGGGG---CCCTGTCTGAGCTGGGG-------------------C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937651 42 - 3785965 GGAGG---CCCTGTCTGAGCTAGGGGGCCCTGTCCACGCTGGGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608665 22 - 90373283 GGGGA---CCCTGTCTGAGCTGGGG-------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486033 22 + 6149316 GGGGG---CCCTGTCTGAATGGGGG-------------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718055 23 - 5823884 GGGGG---CCCTGTCTGAACTGGGG-------------------G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427051 26 + 159171411 GGGGGCTTCCCTGTCTGAGCTGGGG-------------------G i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954979 25 + 11732439 GGGGA-GGCCCTGTCTGAGCTGGGG-------------------G i aotNan1.NW_018500483v1 C 0 T 222 s otoGar3.GL873542 22170950 23 + 22939663 GGGGG---CTCTGTTTGAGCTGGGG-------------------G i otoGar3.GL873542 T 77 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=9795.000000 s hg38.chr20_KI270871v1_alt 32051 4 + 58661 ACCC s panTro5.chr20 65605413 4 + 66533130 ACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369417 3 + 62195757 A-TC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781833 4 - 1017659 ACCC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991378 4 - 92844088 GCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640852 4 + 96509753 GCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092859 4 - 16982598 ACCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937693 4 - 3785965 GCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608687 4 - 90373283 GCCC i chlSab2.chr2 C 0 T 152 s manLeu1.NW_012104365v1 5486055 4 + 6149316 GGGC i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4718078 4 - 5823884 GCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427077 4 + 159171411 ACTC i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22170973 4 + 22939663 ACCT i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=125878.000000 s hg38.chr20_KI270871v1_alt 32055 33 + 58661 TGTCTGAGCTGGG--AGG-------------------------------------CCCTGTCTGAGCTG-------------------GGA s panTro5.chr20 65605417 33 + 66533130 TGTCTGAGCTGGG--GGA-------------------------------------CCCTGTCTGAGCTG-------------------GGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369420 33 + 62195757 TATCTGGGCTAGG--GGA-------------------------------------CCATGTCTGAGCTG-------------------GGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781837 32 - 1017659 TGTCTGAGCT-GG--GGA-------------------------------------CCCTGTCTGAGCTG-------------------GGA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991382 51 - 92844088 TGTCTGAGCTGGG--GGG--------------------------------------CCTGTCTGAGCTGTGTGGGCCCTGTCTGAGCTGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640856 32 + 96509753 TGTCTGAGCTGGG--GGG--------------------------------------CCTGTCTGAGCTG-------------------GGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092863 34 - 16982598 TGTCTGAACGGGGGAGGG--------------------------------------CCTGTCTGAGCTG-------------------GGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937697 70 - 3785965 TGTCTGAGCTGGG--GGGCCTGTCTGAGCTGGGGGGCCCTGTCCACGCTGGGGGGCCCTGTCTGAGCTG-------------------GGA i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486060 33 + 6149316 TGTCTGAGCTGGG--GGG-------------------------------------CCCTGTCTGAGCTG-------------------GGA i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4718082 33 - 5823884 TGTCTGAGCTGGG--GGG-------------------------------------CCCTGTCTGAGCTG-------------------GGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427081 35 + 159171411 TATCTGATCTGGG--GGG-----------------------------------GGCCCTCTCTGAGCTG-------------------GGA i calJac3.chr5 C 0 T 122 s otoGar3.GL873542 22170977 34 + 22939663 TGTCTAAACTGGG--GGG------------------------------------GCCCTGTCTGAGCTG-------------------GAA i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=87686.000000 s hg38.chr20_KI270871v1_alt 32088 20 + 58661 G----GCCCTGTCTGAGCTGGGGG- s panTro5.chr20 65605450 20 + 66533130 G----GCCCTGTCTGAGCTGGGGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369453 24 + 62195757 GGGCTGCCCTGTCTGAGCTAGGGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781869 20 - 1017659 G----GCCCTGTCTGAGCTGGGAG- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991433 20 - 92844088 G----GCCCTGTCTGAGCTGGGGA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640888 20 + 96509753 G----GCCCTGTCTGCACTGGGGT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092897 20 - 16982598 G----GCCCTGTCTGAGCTGGGGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937767 20 - 3785965 G----GCCCTGTCTGAGCTGGGGG- i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486093 20 + 6149316 G----GCCCTGTCTGCGCTGGGGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718115 20 - 5823884 G----GCCCTGTCTGAACTGGGGG- i colAng1.NW_012114444v1 C 0 T 114 s calJac3.chr5 57426994 20 + 159171411 G----GCTCTGTCTGGGCTAGGGG- i calJac3.chr5 T 122 C 0 s otoGar3.GL873542 22171011 21 + 22939663 G----AGGCTGTTTAAGCTTAGAGG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=30355.000000 s hg38.chr20_KI270871v1_alt 32108 14 + 58661 AC--------------------------------------CCTGTCTGAGCT s panTro5.chr20 65605470 14 + 66533130 AC--------------------------------------CCTGTCTGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369477 14 + 62195757 GC--------------------------------------TCTATCTGGGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781889 14 - 1017659 GC--------------------------------------CCTGTCTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991453 51 - 92844088 GC-CTGTCTGAGCTGGGGGGCCCTGTCTGAACAGGGGGGGCCTGTCTGAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640908 14 + 96509753 GC--------------------------------------CCTGTCTGAGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092917 14 - 16982598 GC--------------------------------------CCTGTCTGAGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937787 33 - 3785965 GCCCTGTCCACGCTGGGGGGC-------------------CCTGTCTGAGCT i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486113 15 + 6149316 GG------------------T-------------------CCTGTCTGAGCT i manLeu1.NW_012104365v1 C 0 T 115 s colAng1.NW_012114444v1 4718021 14 - 5823884 -------------------AC-------------------TCTGTCTGGGCT i colAng1.NW_012114444v1 T 114 C 0 s calJac3.chr5 57427014 14 + 159171411 -------------------AC-------------------CCTGTCTGAGCT i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171032 14 + 22939663 -------------------AT-------------------CCTGTCTGAGAA i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=81282.000000 s hg38.chr20_KI270871v1_alt 32122 22 + 58661 -GGGGGAC---CCTGTCTGAGCTGGG s panTro5.chr20 65605484 22 + 66533130 -GGGAGGC---CCTGTCTGAGCTGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369491 22 + 62195757 -AGGGAAC---CCTGTCTGAGCTGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781903 22 - 1017659 -GGGGGAC---TCTGTTTGAGCTGGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991504 21 - 92844088 --GGGGGG---CCTGTCTGAGCTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640922 21 + 96509753 --GGGGGG---CCTGTCTGAGCTGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092931 22 - 16982598 --GGGGGG--CCCTGTCTGAGCTGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937820 21 - 3785965 --GGGGGG---CCTGTCTGCGCTGGG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486013 22 + 6149316 -GGGGGGG---CCTGTCTGAGCTGGG i manLeu1.NW_012104365v1 T 115 C 0 s colAng1.NW_012114444v1 4718035 22 - 5823884 -GGGGAAC---CCTGTCTGAGCTGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427028 25 + 159171411 -AGGGGACTGCCCTGTCTGAGCTGGG i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171046 23 + 22939663 GGGGACAC---CTTGTCTGAGCTGGC i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=-240.000000 s hg38.chr20_KI270871v1_alt 32144 1 + 58661 A s panTro5.chr20 65605506 1 + 66533130 G i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781925 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991525 1 - 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640943 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092953 1 - 16982598 T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937841 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486035 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718057 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427053 1 + 159171411 G i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171069 1 + 22939663 G i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T e panPan2.chr20 61369513 0 + 62195757 C a score=8380.000000 s hg38.chr20_KI270871v1_alt 32145 2 + 58661 GG s panTro5.chr20 65605507 2 + 66533130 GA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369513 2 + 62195757 GA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781926 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991526 2 - 92844088 GG i rheMac8.chr10 C 0 I 20 s macFas5.chr10 95640944 2 + 96509753 GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092954 2 - 16982598 GG i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2937842 2 - 3785965 GC i cerAty1.NW_012001373v1 C 0 I 39 s manLeu1.NW_012104365v1 5486036 2 + 6149316 GG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718058 2 - 5823884 GG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427054 2 + 159171411 GG i calJac3.chr5 C 0 I 3 s otoGar3.GL873542 22171070 2 + 22939663 GG i otoGar3.GL873542 C 0 I 2 e nomLeu3.chr13 109272103 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=192946.000000 s hg38.chr20_KI270871v1_alt 32147 36 + 58661 CCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTG-GGG s panTro5.chr20 65605509 36 + 66533130 CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTG-GGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369515 37 + 62195757 CCCTGTCTGAGCTGGGAGGCCCTGTCTGAGCTGTGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781928 37 - 1017659 CCCTGTCTGAGCTGGGGGACCCTGTCTGAGCTGTGGG i gorGor5.CYUI01015750v1 C 0 T 209 s nomLeu3.chr13 109272103 36 - 110113093 CCGTGTCTGAGCTGGGGGACCCTGTCCGAGCTG-GGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91991548 36 - 92844088 CCCTGTCTGCACTGGGGGGCCCTGTCTGAGCTG-GGG i rheMac8.chr10 I 20 C 0 s macFas5.chr10 95640946 34 + 96509753 -CCTGTCTGCACTGGGGGGCCCTGTCTGAGCT--GGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092957 35 - 16982598 CCCTGTCTGAGCTGGGGGGCCCTGTCTGAGCT--GGG i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2937883 35 - 3785965 CCCTGTCCACGCTGGGGGGCCCTGTCTGAGCT--GGG i cerAty1.NW_012001373v1 I 39 C 0 s manLeu1.NW_012104365v1 5486038 36 + 6149316 CCCTGTCTGAATGGGGGGGGCCTGTCTGAGCTG-GGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718060 36 - 5823884 CCCTGTCTGAACTGGGGGGCCCTGTCTGAGCTG-GGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427059 36 + 159171411 CCCTGTCTGAGCTGGGGGACTCTATCTGATCTG-GGG i calJac3.chr5 I 3 I 2 s otoGar3.GL873542 22171074 34 + 22939663 CCCTCTTTGAGCTGGGGGAGCC--TCTAAGCTG-GAG i otoGar3.GL873542 I 2 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=102156.000000 s hg38.chr20_KI270871v1_alt 32183 21 + 58661 GACCCTGTCTGAGCT------------------------------------GGGAGG s panTro5.chr20 65605545 21 + 66533130 GACCCTGTCTGAGCT------------------------------------GGGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369552 21 + 62195757 GAGCCTGTCTGAGTT------------------------------------GGTTGG i panPan2.chr20 C 0 T 114 s gorGor5.CYUI01015750v1 781756 21 - 1017659 GACCCTGTCTGAGCT------------------------------------GGGAGG i gorGor5.CYUI01015750v1 T 209 C 0 s nomLeu3.chr13 109272139 21 - 110113093 GACCCTGTCCGAGCC------------------------------------GGGAGG i nomLeu3.chr13 C 0 I 1 s rheMac8.chr10 91991584 21 - 92844088 GGCCCTGTCTGAGCT------------------------------------GGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95640980 21 + 96509753 GGCCCTGTCTGAGCT------------------------------------GGGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16092992 21 - 16982598 GGGCCTGTCTGAGCT------------------------------------GGGGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937918 57 - 3785965 GGGCCTGTCTGCGCTGGGGGCTCTATCTGGGCCTGGGGGCCCTTTCTGGACGGGGGG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486074 21 + 6149316 GGCCCTGTCTGAGCT------------------------------------GGGAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718096 21 - 5823884 GGCCCTGTCTGAGCT------------------------------------GGGAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427097 21 + 159171411 GGCCCTCTCTGAGCT------------------------------------GGGAGG i calJac3.chr5 I 2 C 0 s otoGar3.GL873542 22171108 21 + 22939663 GAAACTGTTTGAGTT------------------------------------GGGGGA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=88905.000000 s hg38.chr20_KI270871v1_alt 32204 21 + 58661 CCCTGTCTGAGCT-G-GGGGACC-- s panTro5.chr20 65605566 22 + 66533130 CCCTGTCTGAGCT-GTGGGGAGC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369459 21 + 62195757 CCCTGTCTGAGCT-A-GGGGGCT-- i panPan2.chr20 T 114 C 0 s gorGor5.CYUI01015750v1 781777 21 - 1017659 CCCTGTCTGAGCT-G-GGGGACC-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272161 22 - 110113093 CCCTGTCCACGCC-AGGGGGACT-- i nomLeu3.chr13 I 1 C 0 s rheMac8.chr10 91991605 21 - 92844088 CCCTGTCTGCACT-G-GGGGGCC-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641001 20 + 96509753 -CCTGTCTGAGCT-G-GGGGGCC-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093013 21 - 16982598 CCCTGTCTGAACA-G-GGGGGGC-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937975 21 - 3785965 GCCTGTCTGAGCT-G-GGGGGCC-- i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486095 22 + 6149316 CCCTGTCTGCGCTGG-GGGGGTC-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718117 21 - 5823884 CCCTGTCTGAACT-G-GGGGAAC-- i colAng1.NW_012114444v1 C 0 T 114 s calJac3.chr5 57427118 21 + 159171411 CCCTGTCTGAGCT-G-GGGGACC-- i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171129 23 + 22939663 GCCTGTCTAAAGT-G-GGGGGAACC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=32451.000000 s hg38.chr20_KI270871v1_alt 32225 15 + 58661 CTG---------------------------------------------------------------------------TCTGAGCTG---GGG- s panTro5.chr20 65605588 18 + 66533130 CTG---------------------------------------------------------------------------TCTGAGTTGGTTGGG- i panTro5.chr20 C 0 T 118 s panPan2.chr20 61369480 15 + 62195757 CTA---------------------------------------------------------------------------TCTGGGCTA---GGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781798 15 - 1017659 CTG---------------------------------------------------------------------------TCTGAGCTG---GGA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272183 15 - 110113093 CTA---------------------------------------------------------------------------TCTGAGCTG---GGG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91991626 89 - 92844088 CTGTCTGAGCT-GGGGGCCCTGTCTGAGCTGGGGGGCCTGTCTGAGCTGGGGGGCCCTGTCTGCACTGGGGTGCCCTGTCTGAGCTG---GGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641021 15 + 96509753 CTG---------------------------------------------------------------------------TCTGAGCTG---GGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093034 15 - 16982598 CTG---------------------------------------------------------------------------TCTGAGCTG---GGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2937996 52 - 3785965 CTGTCTGAGCTGGGGGGCCCTGTCTGAATGGGGGGGCCTG--------------------------------------TCTGAGCTG---GGG- i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486117 15 + 6149316 CTG---------------------------------------------------------------------------TCTGAGCTG---GGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718024 15 - 5823884 CTG---------------------------------------------------------------------------TCTGGGCTG---GGG- i colAng1.NW_012114444v1 T 114 C 0 s calJac3.chr5 57427139 15 + 159171411 CTG---------------------------------------------------------------------------TGTGAGCTG---GGG- i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171152 16 + 22939663 CTG---------------------------------------------------------------------------TTTGAGGTG---CAGG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=4909.000000 s hg38.chr20_KI270871v1_alt 32240 1 + 58661 G s panTro5.chr20 65605488 1 + 66533130 G i panTro5.chr20 T 118 C 0 s panPan2.chr20 61369495 1 + 62195757 A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781813 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272198 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91991715 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641036 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093049 1 - 16982598 G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938048 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486132 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718039 1 - 5823884 A i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427154 1 + 159171411 G i calJac3.chr5 C 0 T 119 s otoGar3.GL873542 22171168 1 + 22939663 G i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=177797.000000 s hg38.chr20_KI270871v1_alt 32241 34 + 58661 ACCCTGTCTGAGCTG-GGGGA---CCCTGTCTGAGCTG s panTro5.chr20 65605489 34 + 66533130 GCCCTGTCTGAGCTG-GGGGA---CCCTGTCTGAGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369496 33 + 62195757 ACCCTGTCTGAGCT--GGGGA---CCCTGTCTGAGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781814 34 - 1017659 ACCCTGTCTGAGCTG-GGGGA---CCCTGTCTGAGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272199 34 - 110113093 CCCCTGTCTGAGCTG-AGGGA---CCCTGTCTGAGCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91991716 34 - 92844088 G-CCTGTCTGAGCTGTGTGGG---CCCTGTCTGAGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641037 34 + 96509753 G-CCTGTCTGAGCTGTGTGGG---CCCTGTCTGAGCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093050 34 - 16982598 G-CCTGTCTGAGCTGTGTGGG---CCCTGTCTGAGCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938049 34 - 3785965 GCCCTGTCTGAGCTG-GGGGG---CCCTGTCTGAACGG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486133 34 + 6149316 G-CCTGTCTGAGCTGTGTGGG---CCCTGTCTGAGCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718040 34 - 5823884 ACCCTGTCTGAGCTG-GGGGG---CCCTGTCTGAACTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427036 37 + 159171411 GCCCTGTCTGAGCTG-GGGGGCTTCCCTGTCTGAGCTG i calJac3.chr5 T 119 C 0 s otoGar3.GL873542 22171169 34 + 22939663 ACCCTGTCTGAGCTG-GGGGG---CTCTGTCTCCACTG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=50454.000000 s hg38.chr20_KI270871v1_alt 32275 16 + 58661 GGAGGC-CCTGTCTGAG s panTro5.chr20 65605523 16 + 66533130 GGAGGC-CCTGTCTGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369529 16 + 62195757 GGAGGC-CCTGTCTGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781848 15 - 1017659 GG-GAC-CCTGTCTGAG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991750 15 - 92844088 -GGGGC-CCTGTCTGAG i rheMac8.chr10 C 0 I 112 s macFas5.chr10 95641071 15 + 96509753 -GGGGC-CCTGTCTGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093084 15 - 16982598 -GGGGG-CCTGTCTGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938083 16 - 3785965 -GGGGGTCCTGTCTGAG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486167 15 + 6149316 -GGGGG-CCTGTCTGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718074 16 - 5823884 -GGGGGCCCTGTCTGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427073 16 + 159171411 GGGGAC-TCTATCTGAT i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171203 10 + 22939663 GGAGGT-CCTG------ i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=64262.000000 s hg38.chr20_KI270871v1_alt 32291 21 + 58661 CTG-GGGGA--CCCTGTCTGAGCT s panTro5.chr20 65605539 21 + 66533130 CTG-GGGGA--CCCTGTCTGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369545 22 + 62195757 CTGTGGGGA--GCCTGTCTGAGTT i panPan2.chr20 C 0 I 5 s gorGor5.CYUI01015750v1 781863 21 - 1017659 CTG-GGAGG--CCCTGTCTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991877 21 - 92844088 CTG-GGGGG--CCCTGTCTGAGCT i rheMac8.chr10 I 112 C 0 s macFas5.chr10 95641086 8 + 96509753 CTG-GGGGG--------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093099 20 - 16982598 CTG-GGGGG---CCTGTCTGAACT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938099 21 - 3785965 CTG-GGGGG--CCCTGTCTGAGCT i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486182 20 + 6149316 CTG-GGGGG---CCTGTCTGAACT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718090 21 - 5823884 CTG-GGGGG--CCCTGTCTGAGCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427089 23 + 159171411 CTG-GGGGGGGCCCTCTCTGAGCT i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171213 13 + 22939663 -----------CCCTGCCAGAGCT i otoGar3.GL873542 C 0 T 103 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T a score=17615.000000 s hg38.chr20_KI270871v1_alt 32312 6 + 58661 GGGAG--G s panTro5.chr20 65605560 6 + 66533130 GGGAG--G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369572 8 + 62195757 GGGAGCTG i panPan2.chr20 I 5 C 0 s gorGor5.CYUI01015750v1 781884 6 - 1017659 GGGAG--G i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991898 5 - 92844088 GGGGG--- i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093119 6 - 16982598 GAGGG--G i macNem1.NW_012014244v1 C 0 T 55 s cerAty1.NW_012001373v1 2938120 6 - 3785965 GGGAG--G i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486202 6 + 6149316 GGGAG--G i manLeu1.NW_012104365v1 C 0 T 74 s colAng1.NW_012114444v1 4718111 6 - 5823884 GGGAG--G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427112 6 + 159171411 GGGAG--G i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171123 6 + 22939663 GGGGG--A i otoGar3.GL873542 T 103 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608691 152 - 90373283 T e macFas5.chr10 95641094 0 + 96509753 C a score=-100.000000 s hg38.chr20_KI270871v1_alt 32318 1 + 58661 -C s panTro5.chr20 65605566 1 + 66533130 -C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369580 1 + 62195757 -C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781890 1 - 1017659 -C i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991903 1 - 92844088 -C i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093070 1 - 16982598 -C i macNem1.NW_012014244v1 T 55 C 0 s cerAty1.NW_012001373v1 2938126 1 - 3785965 -C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608539 1 - 90373283 -C i chlSab2.chr2 T 152 C 0 s colAng1.NW_012114444v1 4718117 1 - 5823884 -C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427118 1 + 159171411 -C i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171129 1 + 22939663 G- i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486208 74 + 6149316 T e saiBol1.JH378156 15547421 1521 + 16356641 M e macFas5.chr10 95641094 0 + 96509753 C a score=15600.000000 s hg38.chr20_KI270871v1_alt 32319 2 + 58661 CC s panTro5.chr20 65605567 2 + 66533130 CC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369581 2 + 62195757 CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781891 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991904 2 - 92844088 CC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641094 2 + 96509753 CC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093071 2 - 16982598 CC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938127 2 - 3785965 CC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608540 2 - 90373283 CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486134 2 + 6149316 CC i manLeu1.NW_012104365v1 T 74 C 0 s colAng1.NW_012114444v1 4718118 2 - 5823884 CC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427119 2 + 159171411 CC i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171130 2 + 22939663 CC i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1955004 222 + 11732439 T e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=84935.000000 s hg38.chr20_KI270871v1_alt 32321 11 + 58661 TGTCTGAGCTG s panTro5.chr20 65605569 11 + 66533130 TGTCTGAGCTG i panTro5.chr20 C 0 T 76 s panPan2.chr20 61369583 11 + 62195757 TGTCCGAGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781893 11 - 1017659 TGTCTGAGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991906 11 - 92844088 TGTCTGAGCTG i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95641096 11 + 96509753 TGTCTGAGCTG i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16093073 11 - 16982598 TGTCTGAGCTG i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2938129 11 - 3785965 TGTCTGAGCTG i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89608542 11 - 90373283 TGTCTGAGCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486136 11 + 6149316 TGTCTGAGCTG i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4718120 11 - 5823884 TGTCTGAACTG i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57427121 11 + 159171411 TGTCTGAGCTG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954782 11 + 11732439 TATCTGAGCTG i aotNan1.NW_018500483v1 T 222 C 0 s otoGar3.GL873542 22171132 11 + 22939663 TGTCTAAAGTG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=118192.000000 s hg38.chr20_KI270871v1_alt 32332 23 + 58661 --GGG--G------------------ACCCTGTCTGAGCT-GGGGG- s panTro5.chr20 65605504 23 + 66533130 --GGG--G------------------ACCCTGTCTGAGCT-GGGAG- i panTro5.chr20 T 76 C 0 s panPan2.chr20 61369594 23 + 62195757 --GGG--G------------------ACTCTATCTGAGTT-GGGGG- i panPan2.chr20 C 0 T 121 s gorGor5.CYUI01015750v1 781904 23 - 1017659 --GGG--G------------------ACTCTGTTTGAGCT-GGGAG- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991918 22 - 92844088 --GGG--G--------------------CCTGTCTGAGCTGGGGGG- i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95641108 23 + 96509753 --GTG--G------------------GCCCTGTCTGAGCT-GGGGG- i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16093085 21 - 16982598 --GGG--G--------------------CCTGTCTGAGCT-GGGGG- i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2938141 41 - 3785965 --GGG--GCCCTGTCCACGCTGGGGGGCCCTGTCCACGCT-GGGGG- i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89608553 23 - 90373283 --GGG--G------------------GCCCTGTCTGAGCT-GGGGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486148 23 + 6149316 --GTG--G------------------GCCCTGTCTGAGCT-GGGGG- i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4718132 23 - 5823884 --GGG--A------------------ACCCTGTCTGAGCT-GGGGG- i colAng1.NW_012114444v1 I 1 C 0 s calJac3.chr5 57427132 23 + 159171411 --GGG--G------------------ACCCTGTGTGAGCT-GGGGG- i calJac3.chr5 C 0 T 38 s aotNan1.NW_018500483v1 1954793 25 + 11732439 --GGGGAG------------------ACCCTGTCTGAGCT-GGGGG- i aotNan1.NW_018500483v1 C 0 I 2 s otoGar3.GL873542 22171143 26 + 22939663 GGGGG--A------------------ACCCTGTTTGAGGT-GCAGGG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=104013.000000 s hg38.chr20_KI270871v1_alt 32355 19 + 58661 AC-CCTGTCTGAGCTGGGGG s panTro5.chr20 65605527 19 + 66533130 GC-CCTGTCTGAGCTGGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369496 18 + 62195757 AC-CCTGTCTGAGCT-GGGG i panPan2.chr20 T 121 C 0 s gorGor5.CYUI01015750v1 781927 19 - 1017659 GC-CCTGTCTGAGCTGGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991940 18 - 92844088 -C-CCTGTCTGAGCTGGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641131 18 + 96509753 -C-CCTGTCTGAGCTGGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093106 18 - 16982598 -G-CCTGTCTGAACTGAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938182 18 - 3785965 -G-CCTGTCTGAGCTGGGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608576 19 - 90373283 -GCCCTGTCTGAGCTGGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486171 18 + 6149316 -G-CCTGTCTGAGCTGGGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718155 19 - 5823884 -GCCCTGTCTGAGCTCGGGG i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1954820 19 + 11732439 GC-CCTGTCTGAGCTGGGGG i aotNan1.NW_018500483v1 I 2 I 2 s otoGar3.GL873542 22171169 19 + 22939663 AC-CCTGTCTGAGCTGGGGG i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57427155 38 + 159171411 T a score=68357.000000 s hg38.chr20_KI270871v1_alt 32374 16 + 58661 ACCCTGTCTGAGCTG---------------------G s panTro5.chr20 65605546 16 + 66533130 ACCCTGTCTGAGCTG---------------------G i panTro5.chr20 C 0 I 44 s panPan2.chr20 61369514 16 + 62195757 ACCCTGTCTGAGCTG---------------------G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781946 16 - 1017659 ACCCTGTCTGAGCTG---------------------T i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91991958 36 - 92844088 G-CCTGTCTGAGCTGTGTGGGCCCTGTCTGAGCTGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641149 15 + 96509753 G-CCTGTCTGAGCTG---------------------G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093124 16 - 16982598 GCCCTGTCTGAACTG---------------------G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938200 35 - 3785965 GCCCTGTCCACGCTG-GGGGGCCCTGTCCAAGCTG-G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608595 15 - 90373283 G-CCTGTCTGAACTG---------------------G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486189 15 + 6149316 G-CCTGTCTGAACTG---------------------G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718174 16 - 5823884 ACCCTGTCTGAACTG---------------------G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427117 16 + 159171411 GCCCTGTCTGAGCTG---------------------G i calJac3.chr5 T 38 C 0 s aotNan1.NW_018500483v1 1954841 16 + 11732439 ACCCTGTCTGAGCTG---------------------G i aotNan1.NW_018500483v1 I 2 C 0 s otoGar3.GL873542 22171188 16 + 22939663 GCTCTGTCTCCACTG---------------------G i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=72019.000000 s hg38.chr20_KI270871v1_alt 32390 16 + 58661 GAG--G--CCCTGTCTGAGC s panTro5.chr20 65605606 18 + 66533130 GAGCTG--CCCTGTCCGAGC i panTro5.chr20 I 44 C 0 s panPan2.chr20 61369530 16 + 62195757 GAG--G--CCCTGTCTGAGC i panPan2.chr20 C 0 C 0 s rheMac8.chr10 91991994 16 - 92844088 TGG--G--CCCTGTCTGAGC i rheMac8.chr10 C 0 I 18 s macFas5.chr10 95641164 16 + 96509753 GGG--G--CCCTGTCTGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093140 16 - 16982598 GGG--G--CCCTGTCTGAGC i macNem1.NW_012014244v1 C 0 T 19 s cerAty1.NW_012001373v1 2938235 16 - 3785965 GGG--G--CCCTGTCTGAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608610 16 - 90373283 GGG--G--CCCTGTCTGAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486204 16 + 6149316 GAG--G--CCCTGTCTGAAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718190 16 - 5823884 GGG--G--CCCTGTCTCAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427133 16 + 159171411 GGG--A--CCCTGTGTGAGC i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954857 18 + 11732439 GGG--AGGCCCTGTCTGAGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171204 9 + 22939663 GAG--G--TCCTG------- i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109272233 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e gorGor5.CYUI01015750v1 781962 0 - 1017659 C a score=-198.000000 s hg38.chr20_KI270871v1_alt 32406 6 + 58661 TG-GG-------------------------------------GG s panTro5.chr20 65605624 7 + 66533130 TGTGG-------------------------------------GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369546 7 + 62195757 TGTGG-------------------------------------GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781962 4 - 1017659 ---GG-------------------------------------GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272233 7 - 110113093 TGGGG-------------------------------------TG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992028 43 - 92844088 TG-GGGGGCCTGTCTGAACTGAGGGGCCTGTCTGAGCTGTGTGG i rheMac8.chr10 I 18 C 0 s macFas5.chr10 95641180 6 + 96509753 TG-GG-------------------------------------GT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093137 6 - 16982598 TG-GG-------------------------------------GG i macNem1.NW_012014244v1 T 19 C 0 s cerAty1.NW_012001373v1 2938251 25 - 3785965 TG-GG------------------GGGCCTGTCTGAGCTGTGTGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608626 6 - 90373283 TG-GG-------------------------------------GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486220 6 + 6149316 TG-GG-------------------------------------GA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718206 6 - 5823884 TG-GG-------------------------------------AG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427149 6 + 159171411 TG-GG-------------------------------------GG i calJac3.chr5 C 0 T 78 s aotNan1.NW_018500483v1 1954875 6 + 11732439 TG-GG-------------------------------------GG i aotNan1.NW_018500483v1 C 0 I 2 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e otoGar3.GL873542 22171213 0 + 22939663 C e saiBol1.JH378156 15547421 1521 + 16356641 M a score=31927.000000 s hg38.chr20_KI270871v1_alt 32412 20 + 58661 ACCCTGTCTGAGC---TG--GT---TGG s panTro5.chr20 65605631 20 + 66533130 AGCCTGTCTGAGT---TG--GT---TGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369553 20 + 62195757 AGCCTGTCTGAGT---TG--GT---TGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781966 20 - 1017659 AGCCTGTCTGAGC---TG--GT---TGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272240 20 - 110113093 CGCCTGTCTGAGC---TG--GT---TGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992071 17 - 92844088 GCCCTGTCTGAGC---TG--GG------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641186 17 + 96509753 GCCCTGTCTGAGC---TG--GG------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093143 20 - 16982598 GCCCTGTCTGAGCCAGTG--GG------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938276 17 - 3785965 GCCCTGTCTGAGC---TG--GG------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608632 20 - 90373283 GCCCTGTCTGAGC---TG--GGAGG--- i chlSab2.chr2 C 0 I 39 s manLeu1.NW_012104365v1 5486226 20 + 6149316 GCCCTGTCTGAGC---CA--GTGGG--- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718212 1 - 5823884 G--------------------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427077 17 + 159171411 ACTCTATCTGATC---TG--GG------ i calJac3.chr5 T 78 I 1 s aotNan1.NW_018500483v1 1954883 17 + 11732439 ACCCTGTCTGAGC---TG--GG------ i aotNan1.NW_018500483v1 I 2 I 1 s otoGar3.GL873542 22171213 17 + 22939663 -CCCTGCCAGAGC---TGTCG------- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=71219.000000 s hg38.chr20_KI270871v1_alt 32432 25 + 58661 GGAGCTGC----CCTGTCCGAGCTGGGGG s panTro5.chr20 65605651 25 + 66533130 GGAGCTGC----CCTGTCCGAGCTGGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369573 25 + 62195757 GGAGCTGC----CCTGTCCGAGCTGGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 781986 25 - 1017659 GGAGCCGC----CCTGTCCGAGCTGGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272260 25 - 110113093 GGAGCTGC----CCTGTCCGAGCTGGGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992088 20 - 92844088 GGC---------CCTGTCTGAGCTGGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641203 20 + 96509753 GGG---------CCTGTCTGAGCTGGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093163 25 - 16982598 GGGCCTGC----CCTGTCTGAGTTGGGGG i macNem1.NW_012014244v1 C 0 T 63 s cerAty1.NW_012001373v1 2938293 20 - 3785965 GGG---------CCTGTCTGAGCTGGGGG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486246 25 + 6149316 GGGCCTGC----CCTGTCTGAGTTGGGGG i manLeu1.NW_012104365v1 C 0 T 63 s calJac3.chr5 57427095 2 + 159171411 -GG-------------------------- i calJac3.chr5 I 1 I 1 s aotNan1.NW_018500483v1 1954901 19 + 11732439 -GG---------TCTATCTGAGCTGGGTG i aotNan1.NW_018500483v1 I 1 I 2 s otoGar3.GL873542 22171230 29 + 22939663 GGAGGTGCACAGCAGGGCTGACCTGGAGG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718213 0 - 5823884 C e chlSab2.chr2 89608652 39 - 90373283 I a score=1093.000000 s hg38.chr20_KI270871v1_alt 32457 1 + 58661 A s panTro5.chr20 65605676 1 + 66533130 A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369598 1 + 62195757 A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782011 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272285 1 - 110113093 A i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57427098 1 + 159171411 G i calJac3.chr5 I 1 C 0 s aotNan1.NW_018500483v1 1954922 1 + 11732439 G i aotNan1.NW_018500483v1 I 2 C 0 s otoGar3.GL873542 22171259 1 + 22939663 A i otoGar3.GL873542 C 0 T 110 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486271 63 + 6149316 T e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718213 0 - 5823884 C e chlSab2.chr2 89608652 39 - 90373283 I e cerAty1.NW_012001373v1 2938313 0 - 3785965 C e macNem1.NW_012014244v1 16093188 63 - 16982598 T e macFas5.chr10 95641223 0 + 96509753 C e rheMac8.chr10 91992108 0 - 92844088 C a score=52501.000000 s hg38.chr20_KI270871v1_alt 32458 19 + 58661 CTCTATCTGAGTT--GGGGGC- s panTro5.chr20 65605677 19 + 66533130 CTCTATCTGAGTT--GGGGGC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369599 19 + 62195757 CTCTATCTGAGTT--GGGGGC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782012 19 - 1017659 CTCTATCTGAGTT--GGGGGC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272286 19 - 110113093 CTCTATCTGAGCT--GGGGGC- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992108 18 - 92844088 GCCTGTCTGAGCT--GGGGG-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641223 19 + 96509753 GCCTGTCTGAACT--GAGGGG- i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2938313 19 - 3785965 GCCTGTCTGAGCT--GGGGGG- i cerAty1.NW_012001373v1 C 0 C 0 s calJac3.chr5 57427099 19 + 159171411 CCCTCTCTGAGCT--GGGAGG- i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954923 21 + 11732439 CCCTGTCTGAGCTGGGGGAGG- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171150 20 + 22939663 CCCTGTTTGAGGT--GCAGGGA i otoGar3.GL873542 T 110 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e manLeu1.NW_012104365v1 5486271 63 + 6149316 T e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4718213 0 - 5823884 C e chlSab2.chr2 89608652 39 - 90373283 I e macNem1.NW_012014244v1 16093188 63 - 16982598 T a score=25610.000000 s hg38.chr20_KI270871v1_alt 32477 3 + 58661 CCC s panTro5.chr20 65605696 3 + 66533130 CCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369618 3 + 62195757 CCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782031 3 - 1017659 CCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272305 3 - 110113093 CCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992126 3 - 92844088 CCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641242 3 + 96509753 CCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093125 3 - 16982598 CCC i macNem1.NW_012014244v1 T 63 C 0 s cerAty1.NW_012001373v1 2938332 2 - 3785965 -CC i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5486208 3 + 6149316 CCC i manLeu1.NW_012104365v1 T 63 C 0 s colAng1.NW_012114444v1 4718213 3 - 5823884 CCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427118 3 + 159171411 CCC i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954944 3 + 11732439 CCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171170 3 + 22939663 CCC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89608652 39 - 90373283 I a score=88259.000000 s hg38.chr20_KI270871v1_alt 32480 10 + 58661 TGTCTGAGCT s panTro5.chr20 65605699 10 + 66533130 TGTCTGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369621 10 + 62195757 TGTCTGAGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782034 10 - 1017659 TGTTTGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272308 10 - 110113093 TGTCTGAGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992129 10 - 92844088 TGTCTGAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641245 10 + 96509753 TGTCTGAACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093128 10 - 16982598 TGTCTGAACT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938334 10 - 3785965 TGTCTGAACT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608691 10 - 90373283 TGTCTGAATT i chlSab2.chr2 I 39 C 0 s manLeu1.NW_012104365v1 5486211 10 + 6149316 TGTCTGAACT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718216 10 - 5823884 TGTCTGAGCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427121 10 + 159171411 TGTCTGAGCT i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954947 10 + 11732439 TGTCTGAGCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171173 10 + 22939663 TGTCTGAGCT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e canFam3.chr24 47088302 11 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=149335.000000 s hg38.chr20_KI270871v1_alt 32490 18 + 58661 GGGG--GA-CCCTGTCTGAGC s panTro5.chr20 65605709 18 + 66533130 GGGG--GA-CCCTGTCTGAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369631 18 + 62195757 GGGG--GA-CCCTGTCTGAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782044 18 - 1017659 GGGG--GA-CCCTGTCTGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272318 19 - 110113093 GAGG--GACCCCTGTCTGAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992139 17 - 92844088 -GGG--GG-CCCTGTCTGAGC i rheMac8.chr10 C 0 I 135 s macFas5.chr10 95641255 18 + 96509753 GGGG--GG-CCCTGTCTGAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093138 18 - 16982598 GGGG--GG-CCCTGTCTGAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938344 18 - 3785965 GGGA--GG-CCCTGTCTGAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608701 18 - 90373283 GGGG--GG-CCCTGTCTGAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486221 18 + 6149316 GGGG--AG-CCCTGTCTGAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718226 18 - 5823884 GGGG--GG-CCCTGTCTGAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427131 18 + 159171411 GGGG--GA-CCCTGTGTGAGC i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954957 20 + 11732439 GGGGGAGA-CCCTGTCTGAGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171183 15 + 22939663 GGGG--GG-CTCTGTCTC--- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47088313 18 + 47698779 GGGG--GG-TCCTGCCCATGT i canFam3.chr24 I 11 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=6864.000000 s hg38.chr20_KI270871v1_alt 32508 1 + 58661 C s panTro5.chr20 65605727 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369649 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782062 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272337 1 - 110113093 T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992291 1 - 92844088 C i rheMac8.chr10 I 135 C 0 s macFas5.chr10 95641273 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093156 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938362 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608719 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486239 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718244 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427149 1 + 159171411 T i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1954977 1 + 11732439 T i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171198 1 + 22939663 C i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47088331 1 + 47698779 C i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=32002.000000 s hg38.chr20_KI270871v1_alt 32509 6 + 58661 ----------AGTGGG- s panTro5.chr20 65605728 6 + 66533130 ----------AGTGGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369650 6 + 62195757 ----------AGTGGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782063 6 - 1017659 ----------AGTGGG- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272338 5 - 110113093 -----------GTGGG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992292 6 - 92844088 ----------AGTGGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641274 6 + 96509753 ----------AGTGGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093157 6 - 16982598 ----------AGTGGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938363 6 - 3785965 ----------AGTGGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608720 6 - 90373283 ----------AGTGGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486240 6 + 6149316 ----------AGTGGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718245 6 - 5823884 ----------AGTGGG- i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1954978 6 + 11732439 ----------GGGGGA- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171199 6 + 22939663 ----------ACTGGG- i otoGar3.GL873542 C 0 I 21 s canFam3.chr24 47088332 17 + 47698779 AGCTGGTGCCCGTGGGG i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57427150 0 + 159171411 C a score=17390.000000 s hg38.chr20_KI270871v1_alt 32515 10 + 58661 GG---ACCTGC-C----T s panTro5.chr20 65605734 10 + 66533130 GG---ACCTGC-C----T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369656 10 + 62195757 GG---ACCTGC-C----T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782069 10 - 1017659 GG---ACCTGC-C----T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272343 12 - 110113093 GGTGCGCCTGT-C----- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992298 15 - 92844088 GG---GCCCCTGCCTGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641280 14 + 96509753 GG---GCCTGC-CCTGTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093163 14 - 16982598 GG---GCCTGC-CCTGTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938369 14 - 3785965 GG---GCCTGC-CCTGTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608726 14 - 90373283 GG---GCCTGC-CCTGTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486246 14 + 6149316 GG---GCCTGC-CCTGTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718251 10 - 5823884 GG---GCCTGC-----TC i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1954984 10 + 11732439 GG---CCCTGT-CT---- i aotNan1.NW_018500483v1 C 0 I 10 s canFam3.chr24 47088349 10 + 47698779 GG---TCCTGC-CC---- i canFam3.chr24 C 0 I 3 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e otoGar3.GL873542 22171205 21 + 22939663 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57427150 0 + 159171411 C a score=19296.000000 s hg38.chr20_KI270871v1_alt 32525 3 + 58661 TGA s panTro5.chr20 65605744 3 + 66533130 TGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369666 3 + 62195757 TGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782079 3 - 1017659 TGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272355 3 - 110113093 TGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992313 3 - 92844088 TGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641294 3 + 96509753 TGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093177 3 - 16982598 TGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938383 3 - 3785965 TGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608740 3 - 90373283 TGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486260 3 + 6149316 TGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718261 3 - 5823884 TGA i colAng1.NW_012114444v1 C 0 C 0 s canFam3.chr24 47088362 3 + 47698779 TCA i canFam3.chr24 I 3 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1954994 10 + 11732439 I e cebCap1.NW_016107870v1 394220 16 + 1231380 I e otoGar3.GL873542 22171205 21 + 22939663 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57427150 0 + 159171411 C a score=23367.000000 s hg38.chr20_KI270871v1_alt 32528 4 + 58661 GTTG s panTro5.chr20 65605747 4 + 66533130 GTTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369669 4 + 62195757 GTTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782082 4 - 1017659 GTTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272358 4 - 110113093 GCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91992316 4 - 92844088 GTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641297 4 + 96509753 GTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093180 4 - 16982598 GTTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938386 4 - 3785965 GTTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608743 3 - 90373283 GTT- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486263 4 + 6149316 GTTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718264 4 - 5823884 GTTG i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22171226 4 + 22939663 GTCG i otoGar3.GL873542 I 21 C 0 s canFam3.chr24 47088365 4 + 47698779 GCTG i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1954994 10 + 11732439 I e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57427150 0 + 159171411 C a score=10500.000000 s hg38.chr20_KI270871v1_alt 32532 1 + 58661 G s panTro5.chr20 65605751 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369673 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782086 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272362 1 - 110113093 G i nomLeu3.chr13 C 0 I 107 s rheMac8.chr10 91992320 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641301 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093184 1 - 16982598 G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938390 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608746 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486267 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718268 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427150 1 + 159171411 G i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171230 1 + 22939663 G i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47088369 1 + 47698779 G i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1954994 10 + 11732439 I e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=30212.000000 s hg38.chr20_KI270871v1_alt 32533 4 + 58661 GGGG s panTro5.chr20 65605752 4 + 66533130 GGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369674 4 + 62195757 GGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782087 4 - 1017659 GGGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992321 4 - 92844088 GGGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641302 4 + 96509753 GGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093185 4 - 16982598 GGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938391 4 - 3785965 GGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608747 4 - 90373283 GGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486268 4 + 6149316 GGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718269 4 - 5823884 GGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427151 4 + 159171411 GGGG i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22171231 4 + 22939663 GAGG i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47088370 4 + 47698779 GGGG i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e aotNan1.NW_018500483v1 1954994 10 + 11732439 I e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=9676.000000 s hg38.chr20_KI270871v1_alt 32537 2 + 58661 TG- s panTro5.chr20 65605756 2 + 66533130 TG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369678 2 + 62195757 TG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782091 2 - 1017659 TG- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992325 2 - 92844088 GG- i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95641306 2 + 96509753 TG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093189 2 - 16982598 TG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938395 2 - 3785965 TG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608751 2 - 90373283 TG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486272 2 + 6149316 TG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718273 2 - 5823884 TG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427155 2 + 159171411 TG- i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1955004 2 + 11732439 TG- i aotNan1.NW_018500483v1 I 10 C 0 s otoGar3.GL873542 22171235 2 + 22939663 TG- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47088374 2 + 47698779 -GG i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114013 0 + 182113224 C e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=164766.000000 s hg38.chr20_KI270871v1_alt 32539 21 + 58661 CACAGCAGGGCTGAGCTGAGG s panTro5.chr20 65605758 21 + 66533130 CACAGCGGGGCTGAGCTGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369680 21 + 62195757 CACAGCGGGGCTGAGCTGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782093 21 - 1017659 CACAGCAGGGCTGAGCTGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992328 21 - 92844088 CACAGCAGGGCTGAGCTGAGG i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95641308 21 + 96509753 CACAGCAGGGCTGAGCTGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093191 21 - 16982598 CACAGCAGGGCTGAGCTGAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938397 21 - 3785965 CACAGCAGGGCTGAGCTGAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608753 21 - 90373283 CACAGCAGGGCTGAGCTGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486274 21 + 6149316 CACAGCAGGGCTGAGCTGAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718275 21 - 5823884 CACAGCAGGGCTGAGCTGAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427157 15 + 159171411 TACAGCAGGGCCATG------ i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1955006 14 + 11732439 TACAGCAGGGCCGT------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171237 21 + 22939663 CACAGCAGGGCTGACCTGGAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114013 21 + 182113224 CACAGCAGAGCTGACCTGAGA i mm10.chr2 C 0 C 0 s canFam3.chr24 47088376 20 + 47698779 CACAG-AAGGCCAAGCTGAGG i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394220 16 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=288671.000000 s hg38.chr20_KI270871v1_alt 32560 40 + 58661 GAAGGCCCCAGGTAACTGA----AAAGGGGGCCACAGTCTCCAC s panTro5.chr20 65605779 44 + 66533130 GAAGGCCCCAGGTAACTAACTGCAAAGGGGGCCACAGTCTCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369701 44 + 62195757 GAAGGCCCCAGGTAACTAACTGCAAAGGGGGCCACAGTCTCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782114 40 - 1017659 GAAGGCCCCAGGTAACTGC----AAAGGGGGCCACAGTCTCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992349 38 - 92844088 GAATGCCCCAGGTAACTAC----AAA-GGGGTCACA-CCTCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641329 40 + 96509753 GAAGGCCCCAGGTAACTAC----AAAGGGGGTCACAGCCTCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093212 40 - 16982598 GAAGGCCCCAGGTAACTAC----AAAGGGGGTCACAGCCTCCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938418 40 - 3785965 GAAGGCCCCAGGTAACTAC----AAAGGGGGTCACAGCCTCCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608774 40 - 90373283 GAAGGCCCCAGGTAACTAC----AAAGGGGGTCACAGCCTCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486295 40 + 6149316 GAAGGCCCCAGGTAACTAC----AAAGGGGGTCACAGCCTCCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718296 40 - 5823884 GAAGGCCCCAGGTAACTAC----AAAGGGGGTCTCAGCCTCCAC i colAng1.NW_012114444v1 C 0 I 349 s calJac3.chr5 57427172 37 + 159171411 -AAAGACCCAGGTAACTAC----AA--GGGGGCACAGCCCCCAA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394236 39 + 1231380 GAAGGACCCAGGTAACTAC----AA-GGGGGGCATAGCCTCCAC i cebCap1.NW_016107870v1 I 16 C 0 s aotNan1.NW_018500483v1 1955020 39 + 11732439 GAAGGACCCAGGTAACTAC----AA-GGGGGGCACAGCCTCCAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171258 27 + 22939663 GAAGGTCCCAAGTAACTGA----AAAAGGAG------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114034 36 + 182113224 -GACTTCCCAGCCA--TAC----CAAAAGGAGAACAGGTTCCT- i mm10.chr2 C 0 C 0 s canFam3.chr24 47088396 38 + 47698779 GAAGGTCCCAGGTAACTGC----AA--GGGGGTGTGGCCTCTAC i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=2664765.000000 s hg38.chr20_KI270871v1_alt 32600 338 + 58661 CCAGACCTTGGGAAGCCCCA-GAACAGAGGAGCAGGGCGGGCAGTAGA-GG------------GAGGTGCATTTGGATGGGGACCAGTCTCCTTGAGGG-CCCCCCACCCCGTTACCAACAGCAACACAGGAACTGCACTCCC----GTTGCCATGGCGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACGCCCCACATCTC-----CGGCTCCAGAGAT----------AAAGTGGGGA-------------TGGGAAAGGGAGGG-------------TGGCCCACCCAGGGTGGGGGCGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCAGGAGGGGTGAGG- s panTro5.chr20 65605823 338 + 66533130 CCAGACCTTGGGAAGCCCCA-GAACAGAGGAGCAGGGCGGGCAGTAGA-GG------------GAGATGCATTTGGATGGGGACCAGTCTCCTTGAGGG-CCCCCCACCCTGTTACCAACAGCAACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACGCCCCACAGCTC-----CGGCTCCAGAGAT----------AAAGTGGGGA-------------TGGGAAAGGGAGGG-------------TGGCCCACCCAGGGTGGGGGCGATGGAGGCAGGGCTGTCAGCCACTGTGAGGTCACCAGGAGGGGTGAGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61369745 338 + 62195757 CCAGACCTTGGGAAGCCCCA-GAACAGAGGAGCAGGGCGGGCAGTAGA-GG------------GAGATGCATTTGGATGGGGACCAGTCTCCTTGAGGG-CCCCCCACCCCGTTACCAACAGCAACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACGCCCCACAGCTC-----CGGCTCCAGAGAT----------AAAGTGGGGA-------------TGGGAAAGGGAGGG-------------TGGCCCACCCAGGGTGGGGGCGATGGAGGCAGGGCTGTCAGCCACTGTGAGGTCACCAGGAGGGGTGAGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782154 338 - 1017659 CCAGACCTTGGGAAGCCCCA-GAACAGAGGAGCAGGGCGGGCAGTAGA-GG------------GAGGTGCATTTGGATGGGGACCAGTCTCCTTGAGGG-CCCCCCACCCCGTTACCAACAGCAACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACGCCCCACAGCTC-----CGGCTCCAGAGAT----------AAAGTGGGGA-------------TGGGAAAGGGAGGG-------------TGGGCCACCCAGGGTGGGGGCGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCAGGAGGGGTGAGG- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992387 354 - 92844088 CCAGGACTTGGGCAGCCCAACGGACAGAGGGGCAGGGCGGGCAGTAGA-GG------------GGGGTGCATTCGGATGGGGATCAGTCTCCTCGAGGG-CCCCCTACCCCGTTACCAACAGCGACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGCTCCAGAGATAGAT------AACGTGggga--------------gggaaagggagggaaggagggagAGTGGACCTGCCCAGGGT-GGGGTGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCATGAGGGGTGAGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641369 353 + 96509753 CCAGACTTTGGGCAGCCCCA-GGACAGAGGGGCAGGGTGGGCAGTAGA-GG------------GGGGTGCATTCGGATGGGGATCAGTCTCCTCGAGGG-CCCCCTACCCCGTTACCAACAGCGACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGCTCCAGAGATAGAT------AACGTGggga--------------gggaaagggagggaaggagggagAGTGGACCTGCCCAGGGT-GGGGTGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCAtgaggggtgagg- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093252 357 - 16982598 CCAGACTTTGGGCAGCCCCA-GGACAGAGGGGCAGGGCGGGCAGTAGA-GG------------GGGGTGCATTCGGATGGGGATCAGTCTCCTCGAGGG-CCCCCTACCCCGTTACCAACAGCGACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGCTCCAGAGATAGATAACG--AACGTGggga--------------gggaaagggagggaaggagggagAGTGGACCTGCCCAGGGT-GGGGAGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCATGAGGGGTGAGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938458 353 - 3785965 CCAGACCTTGGGCAGCCCCA-GGACAGAGGGGCAGGGCGGGCAGTAGA-GG------------GGGGTGCATTCGCATGGGGATCAGTCTCCTCGCGGG-CCCCCTACCCCGTTACTAACAGCGACACAGGAACTGCACTCCT----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----ACAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGTTCCAGAGATAGAT------AACGTGggga--------------gggaaagggagggaaggagggagAGTGGACCTGCCCAGGGT-GGGGTGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCATGAGGGGTGAGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89608814 353 - 90373283 CCAGACCTTGGGCAGCCCCA-GGACAGAGGGGCAGGTTGGGCAGTAGA-GG------------GGGGTGCATTCGGATGGGGATCAGTCTCCTCGAGGG-CCCCCTACCCCGTTACCAACAGCAACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGCTCCAGAGATAGAT------AAAGTGggga--------------gggaaagggagggaaggagggagggtggACCTGCCCAGGGT-GGGGTGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCATGAGGAGTGAGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486335 353 + 6149316 CCAGACCTTGGGCAGCCCCA-GGACAGAGGGGCAGGGCAGGCAGTAGA-GG------------GGGGTGCATTCGGATGGGGATCAGTCTCCTCGAGGG-CCCCCTACCCCGTTACCAACAGCGACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGTTCCAGAGATAGAT------ACCGTGggga--------------gggaaagggagggaaggagggagAGTGGACCTGCCCAGGGT-GGGGTGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCAtgaggggtgagg- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4718685 355 - 5823884 CCAGACCTTGGGCAGCCCCA-GGACAGAGGGGCAGGGTGGGCAGTAGAGGG------------GGGGTGCATTCGGATGGGGATCAGTCTCCTCGAGGG-CCCCCTACCCCGTTACCAACAGCGACACAGGAACTGCACTCCC----GTTGCCATGGTGCCCA-CCCTGCCCTGGCACAGGGTTGCT----GCAAGCGTCACAGCC-CCCACCCCGACGCCCACGTCTGCCGTCTGCTGGGGACACCCCACAGCTC-----TGGCTCCAGAGATAGAT------AAAGTGggga-------------ggggaaagggagggaaggagggagggtggACCTGCCCAGGGT-GGGGTGATGGAGGCGGGGCTGTCAGCCACTGTGAGGTCACCATGAGGGGTGAGG- i colAng1.NW_012114444v1 I 349 C 0 s calJac3.chr5 57427209 327 + 159171411 CCAGACCTTGGGCAGTCCCA-GGACAGAGGGACAGGGCGGGCAGTAGA-GG------------GAGGGGCATTTGGGTGGGGACCACTCTCTCTGAGAG-CCCCCCACCCCGTTACCAACAGCAACACAGGAATTGTACTCCCTCCTGTTGCCATGGCAGCCA-CCCCGCCCTGGCACAGCATTGCT----GCCAGCGTCACCACC-CCCACCCCAACACCCACGCCTGCCGTCTGCTGGGGACACCCCACAGCTT-----TGGCTCCGGAGAT----------AATGGGAGGG-------------TAGGAAAAGG---------------------------GGGCT-GAGGGGATGGAGGCGCGGCTGTCAGCTGCTGTGACGTCACCAGAGCGGGTGAGG- i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394275 343 + 1231380 CCAGACCTTGGGCAGTCCCA-GGACAGAGGGATAGCGCGGGCAGTAGA-GG------------GAGGTGCCTTCGGGTGGGGACCAGTCTCTCTGAGAGCCCCCCCACCCCGTTACCAACAGCAACACAGGAATTGTACTCCCTCCCGTTGCCATGGCACCCA-CCCTGCCCTGGCACAGTGTTGCT----GCCAGCGTCACCACC-CCCACCCCAACACCCACGCCTGCCGTCTGCTGGGGACGCCCCACGGCTT-----TGGCTCCGGAGAT----------AATGGGAGGG-------------TAGGAAAAGGGGGG------------TGGGCCCACGCGGGGT-GGGGGGATGGAGGCGGGGCTGTCAGCTGCTGTGACGTCACCAGGAGGGGTGAGG- i cebCap1.NW_016107870v1 C 0 I 177 s aotNan1.NW_018500483v1 1955059 341 + 11732439 CCAGACCTTGGGCAGCCCCA-GGACAGAGGGGCAGGGCGGGCAGTAGA-GG------------GAGGTGCATTCGGGTGGGGACCAGTCTCTCTGAGC--CCCCCCACCCCGTTACCAACAGCAACACAGGAATCATACTCCCTCCCGTTGCCATGGCAGCCA-CCCTGCCCTGGCACAGCGCTGCT----GCCAGCGTCACCACC-CCCACCCCAACACCCACGCCTGCCGTCTGCTGGGGACGCCCCACGGCTT-----TGGCTCCGGAGAT----------AATGGGAGGG-------------TAGGAGAAGGGGGG------------TGGGCCTGCCCGGGAT-GGGGGGATGGAGGCGGGGCTGTCAGCTGCTGTGACGTCACCAGGAGGGGTGAGG- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171285 246 + 22939663 ----------------------------------------------------------------------------------GTCAGTCTCCCTGAGGC----TGTGCCCCATTACCAACATCAGCACAGAAATCCCTGTCCT----GTTGCCatggtgccca-ccctg--ctgacacagggttgct----gtgagcatcaCAACC-CCT-CTCTAGCACCCACATCTTCAGGCAGCT-------CCCCAC-GCTT-----CGGT-------------------AGGGTAGGGGCTGCCTAAACCCTCAGGAGGGACAGGAAAG--------------------------TGGGCGAAGGAGGTGGGGCTGTTGGGT-CTGTGACATCAGCAGGAGGAATGAGG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114070 320 + 182113224 TTAGAATTCAGGCAGCTCCA-GGGCAGTGGGGCAAAGTGGGTGGAAAA--------------------GCACTCTAGTGGG-ATCATTCT--TGAAGGG-CCATCT---CCGTTACCAATGGCAACAGAGGAATTACAGTCCC----GTTTCCATGACACCCACCCCTGTCCCGTCACAGGGTTTATATGAGCGAGCATCATGGCCTCCCACCCCTTCACCCACATCTTCTG------GGGAGCACCACATACTTCAGTGGGGGCACCTGAGCACGGAGACTCCAGAGGGCAGG-------------GCGGAAAGGGAGGG------------------------GGGA-GTGGTGA--------GAACTGCTGGGTGTTGTTATATCACTTCTAGGGACTAGG- i mm10.chr2 C 0 C 0 s canFam3.chr24 47088434 301 + 47698779 -GTGGCCT---GTGGCCCCC-GGGCCAGGGCGCAGGGTGGGCGGGGGA-GGGAGGGCTCCTCTGAGGTTGGTGTAGACACGGATCAG-------------CCTCCTCCTCCGTCACCAACAGCAACAAAGACATTCCGCTGTG----GTTGCCATGGCGCCCG-CCCCTGCCTGTCAT----TTGCT----GTCAGCTTCTCAGCC-CCCGCCCCT-CACCCACGTCCTCCA------GGAAACACCCCACACCTC-----C--------------------------CGGGGA-------------GGGGACCACCTGGG-------------------CCCTCGGCT-CTAGTGACAGGTGGGGGGCTGTCAGACGCCGCGGGGGCACAGGGTGGGGCGGCGG i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=157900.000000 s hg38.chr20_KI270871v1_alt 32938 31 + 58661 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG s panTro5.chr20 65606161 31 + 66533130 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370083 31 + 62195757 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782492 31 - 1017659 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992741 31 - 92844088 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641722 31 + 96509753 tgagggctgagt-----------------------------------------t----acagccagggtggggctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093609 31 - 16982598 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938811 31 - 3785965 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGGTGGGGCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609167 31 - 90373283 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAgggtggggctg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486688 31 + 6149316 tgagggctgagt-----------------------------------------t----acagccagggtggggctg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719040 31 - 5823884 TGAGGGCTGAGT-----------------------------------------T----ACAGCCAGGgtggggctg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427536 29 + 159171411 CAAAGCCTGAGT-----------------------------------------TACTCACAGCCAGGGTG------ i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1955400 34 + 11732439 -GAGGCGTGAGT-----------------------------------------TACTCACAGCCAGGGTGGGGCTG i aotNan1.NW_018500483v1 C 0 I 141 s otoGar3.GL873542 22171531 15 + 22939663 --------GGCC-----------------------------------------T----GCA--------GGAGCCG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114390 21 + 182113224 -------------------------------------------------------AGAAGGACTGGGAAGGGACTT i mm10.chr2 C 0 I 22 s canFam3.chr24 47088735 71 + 47698779 GGTGGGCTGGGTGCTGGGGAGAAGCAGGTGGGCGGTGGGTGCTGCAAGGTCGCT----AGTGCAGGGGTGGGGCG- i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e cebCap1.NW_016107870v1 394618 177 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=332467.000000 s hg38.chr20_KI270871v1_alt 32969 70 + 58661 GGGCATAGCCCGGGCTGTGGGGCTGGGGG---------------CAGATGGGAACTGACAGGGCACAAAGAC------------ATGGCCAGAGCTG s panTro5.chr20 65606192 69 + 66533130 GGGCATAGCCCGGGCTATGGGGCTGGGGG---------------CAGGTGGGAACTGACAGGGCACAAAGAC------------ATGGCCAGAGCT- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370114 70 + 62195757 GGGCATAGCCCGGGCTGTGGGGCTGGGGG---------------CAGGTGGGAACTGACAGGGCACAAAGAC------------ATGGCCAGAGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782523 70 - 1017659 GGGCATAGCCCGGGCTGTGGGGCTGGGGG---------------CAGGTGGGAACTGACAGGACACAAAGAC------------ATGGCCAGAGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992772 70 - 92844088 GGGCACAGCCAGGGCTGTGGGGCTGGGGG---------------CAGGTGGGAGCTGACAGAGCACAAAGAC------------ATggccggagctg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641753 70 + 96509753 gggcacagccggggctgtggggctggggg---------------cAGGTGGGAGCTGACAGAGCACAAAGAC------------ATggccggagctg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093640 70 - 16982598 GGGCACAGCCGGGGCTGTGGGGCTGGGGG---------------CAGGTGGGAGCTGACAGAGCACAAAGAC------------ATGGCCAGAgctg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938842 70 - 3785965 GGGCACAGCCGGGGCTGTGGGGCTGGGGC---------------CAGGTGGGAGCTGACAGAGCACAAAGAC------------ATggccggagctg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609198 70 - 90373283 gggcacagccggggctgtgggactggggG---------------CAGGTGGGAGCTGACAGAGCACAAAGAC------------ATGGCCAGAGCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486719 70 + 6149316 gggcacagccggggctgtggggctggggg---------------cAGGTGGGAGCTGACAGAGCACAAAGAC------------ATggccggagctg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719071 70 - 5823884 gggcatagccggggctgtggggctcgggg---------------cagctgggagctgACAGATCACAAAGAC------------ATGGCCAGAGCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427565 58 + 159171411 -----------GGGCTGTGGGGCTGGGGG---------------CAGGTGGG-GCTGACAGAGCACCAAGTC------------ACAGCCCGTGCTG i calJac3.chr5 C 0 I 90 s otoGar3.GL873542 22171546 19 + 22939663 -----TGACATCAGCAGTGGGGTT------------------------------------------------------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114433 97 + 182113224 GGGAGCAACAGTAGCTGTGTGTGCAAGAAAGAACACTAACTACTCTGGAGGAGACCGTGTATGCAGAAGGCCTGGCTCACTCCGACGATCAGGGTTG i mm10.chr2 I 22 C 0 s canFam3.chr24 47088806 60 + 47698779 GGACGGGCCCGGGTCCACCGGGCTGGAGC---------------CGGAGAGCAGGGGCCAGG----------------------GTGGCAGGGGGCG i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955434 141 + 11732439 I e cebCap1.NW_016107870v1 394618 177 + 1231380 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=336661.000000 s hg38.chr20_KI270871v1_alt 33039 108 + 58661 GGGCTG---------GGGGC--------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------TCAGAGGCC------CTGTAGTAACAGGAACG------------------------------GAAGACAGACGCCCAGGCAGCTCCAGCTCC---TTCCTGGGCACTT--CCAG----CCC---CCGCCCTCCCTC--GGGGCTCA s panTro5.chr20 65606261 104 + 66533130 GGGCTG---------GGA----------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------TCAGAGGCC------CTGCAGTAACAGGAACG------------------------------G-AGACAGACGCCCAGGCAG-TCCAGCTCC---TTCCTAGGGCCTT--CCAG----CCC---CCGCCCTCCCGC--GGGGCTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370184 108 + 62195757 GGGCTG---------GGGAC--------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------TCAGAGGCC------CTGCAGTAACAGGAACG------------------------------GAGGACAGACGCCCAGGCAGCTCCAGCTCC---TTCCTGGGCCCTT--CCAG----CCC---CCGCCCTCCCGC--GGGGCTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782593 108 - 1017659 GGGCTG---------GGGGC--------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------GCAGAGGCC------CTGTAGTAACAGGAACG------------------------------GAGGACAGACGCCCAGGCAGCTCCAGCTCC---TTCCTGGGCCCTT--CCAG----CCC---CCGCCCTCCCTC--GGGGCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91992842 196 - 92844088 gggctgcgggggct-gggacggggctggaggcagc----------------------------------------------------------------------------------------------agggcaggggagaggcatcggtggtgggggtg-------------------------------gggGAGGCCTTCACAGGAAGCCAGGGT---TGGGG------GCATCAGAGGCC------CTGTAGTAACAGGAATG------------------------------AGGGACAGATGCCCA-GCAGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---CCACCCTCTCGC--GGGGCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95641823 196 + 96509753 gggctgcgggggct-gggacggggctggaggcagc---------------------------------------------------------------agggcaggggagaggcatcggtggtgggggt-------------------------------g-------------------------------gggGAGGCCTTCACAGGAAGCCAGGGT---TGGGG------GCATCAGAGGCC------CTGTAGTAACAGGAATG------------------------------AGGGACAGATGCCCA-GCGGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---CCACCCTCTCGC--GGGGCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093710 196 - 16982598 gggctgcgggggct-gggacggggctggaggcagc---------------------------------------------------------------agggcaggggagaggcatcggtggtgggggt-------------------------------g-------------------------------gggGAGGCCTTCACAGGAAGCCAGGGT---TGGGG------GCATCAGAGGCC------CTGTAGTAACAGGAATG------------------------------AGGGACAGATGCCCA-GCAGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---CCACCCTCTCGC--GGGGCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2938912 198 - 3785965 gggctgcgggggct-gggacggggctgCAGGGAGC---------------------------------------------------------------A-------------------------------------------------------------GGGCAGGGGAGAGGCATCGCGTGGTGGGGGTGGGGGAGGCCTTCACAGGAAGCCAGGGT---TAGGG------GCATCAGAGGCC------CTGTAGTAACAGGAATG------------------------------AGGGACAGATGCCCAGGCAGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---GCACCCTCTCGC--GGGGCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609268 198 - 90373283 GGGCTGCGGGGGCT-GGGACAGGGCTGGAGGGAGC--------------------------------AGGGCAGGGGAGAGGCATCGCGTGGTGGCGGT-------------------------------------------------------------G-------------------------------GGGGAGGCCTTTACAGGAAGCCAGGGT---TGGGG------GCATCAGAGGCC------CTGGAGTAACAGGAATG------------------------------AGGGACAGATGCCCAGGCAGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---CCACCCTCTCGC--GGGGCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486789 199 + 6149316 gggctgcgggggctggggacggggctggagggagcagggcaggggagaggcatcgcgtgctgggggt---------------------------------------------------------------------------------------------g-------------------------------gggGAGGCCTTCACAGGAAGCCAGGGT---TGGGG------GCATCAGAGGCC------CTGTAGTAACAGGAATG------------------------------AGGGACAGATGCCCAGGCAGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---CCATCCTCTCGC--GGGGCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719141 198 - 5823884 GGGCTGCGGGGGCT-GGGACGGGGCTGGAGGGAGC---------------------------------------------------------------A-------------------------------------------------------------GGGCAGGGGAGAGGCATCGCGTGGTGGGGGTGGGGGAGGCCTTTACAGGAAGCCAGGGT---TGGGG------GCATCAGAGGCC------CTGTAGTAACAGGAATG------------------------------AGGGACAGATGCCCAGGCAGCTCTGGCTCC---TTCCTGGGCCCCT--CCAG----CCC---CCACCCTCTCGC--GGGGCTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57427713 142 + 159171411 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT---TGGGG------GTGTCAGAGGTT------CTGTAGTAACAGGAATGGGGGACAGACACCTAGGCAGCTCAGGAATAGGGGACAGACACCCAGGCAGCTCCGGTTCC---TTCCCAGGCTCCT--CTGGGCCCCCA---ACACCCTCACTC--GGGGCTCA i calJac3.chr5 I 90 I 1753 s cebCap1.NW_016107870v1 394795 109 + 1231380 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT---TGGGG------GCATCAGAGGCT------CTGTAGTAACAGGAACG------------------------------GGGGACAGACACCCAGGCAGCGCCAGCTCC---TTCCC-GGCCCCT--CCAG--CCCCA---CCGCCCCCGCGC--GGGGCTCA i cebCap1.NW_016107870v1 I 177 C 0 s aotNan1.NW_018500483v1 1955575 90 + 11732439 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT---TGGGG------GCGTCAGAGGCT------CTGTAGTAACAGGAACG------------------------------GGGGACAGACACCCAGGCAGCTCCGGCTCC---TTCCCGGGC---------------------------CGCTC--GGGGCTCA i aotNan1.NW_018500483v1 I 141 C 0 s otoGar3.GL873542 22171565 45 + 22939663 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC---GCCCCAGGCAGGC--TCAC----GCC---CAAGCCTGTGGCTGTGGGCTCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114530 107 + 182113224 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGC---AGAAG----CAGAAGCAGAGGTC---------------CGGGGTTG------------------------------GGAGGCAGACTGCTGCAGAGGTCCATTTCCCAGCCTCCAGGCCTCTCCCCAT----GCC---CTGCCCAAGTGT--GAGGCTTA i mm10.chr2 C 0 C 0 s canFam3.chr24 47088866 119 + 47698779 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTCTCTGGGGGTCTCTGCGGGGGAGGCCAGGCTCACGCAGGAGCAGGTCTG------------------------------GGGGTCAGAGGCTCC-GCAGCAAGGGGTCA--------GGGACAGC--GCGG----CCCACGCCACCCTCCCGC---CGGCTCA i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=440246.000000 s hg38.chr20_KI270871v1_alt 33147 38 + 58661 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC s panTro5.chr20 65606365 37 + 66533130 CCAGGATGTAGAGGG-CCCCTCCGAGCTCTTCTCATAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370292 38 + 62195757 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782701 38 - 1017659 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91993038 38 - 92844088 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642019 38 + 96509753 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093906 38 - 16982598 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939110 38 - 3785965 CCAGGATGTAGAGGGCCCCCTCGGAGCTCTTCTCATAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609466 38 - 90373283 CCAGGATGTAGAGGGCCCCCTCTGAGCTCTTCTCATAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5486988 38 + 6149316 CCAGGATGTAGAGGGCCCCCTCTGAGCTCTTCTCATAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719339 38 - 5823884 CCAGGATGTAGAGGGCCCCCTCGGAGCTCTTCTCATAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429608 37 + 159171411 CCAGGATGTAGA-GGCCCCCTCCGAGCTCTTCTCATAC i calJac3.chr5 I 1753 C 0 s cebCap1.NW_016107870v1 394904 38 + 1231380 CCAGGATGTAGAGGGCCCCCTCCGAACTCTTCTCATAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1955665 38 + 11732439 CCAGGATGTAGAGGGCCCCCTCCGAGCTCTTCTCATAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171610 38 + 22939663 CCAGGATGTAGAGCGCACCCTCCGAACTCTTCTCGTAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114637 38 + 182113224 CCAAGATGTAGAGGGCCCCCTCAGAGCTCTTCTCGTAC i mm10.chr2 C 0 C 0 s canFam3.chr24 47088985 38 + 47698779 CCAAGATGTAGAGCGCGCCCTCGGAGCTCTTCTCGTAC i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272363 107 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=841882.000000 s hg38.chr20_KI270871v1_alt 33185 74 + 58661 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAAACCAGGAGG-AACCT---GGGG-GCAGGG-AACGCGCG s panTro5.chr20 65606402 72 + 66533130 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAAACCAGGAGG-AACCT----GGG-GCA-GG-AACGCGCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370330 74 + 62195757 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAAACCAGGAGG-AACCT---GGGG-GCAGGG-AACGCGCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782739 74 - 1017659 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAAACCAGGAGG-AACCT---GGGG-GCAGGG-AACGCGCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272470 75 - 110113093 TCCTGGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAAACCAGGAGGAAACCT---GGGG-GCAGGG-AACGCATG i nomLeu3.chr13 I 107 C 0 s rheMac8.chr10 91993076 74 - 92844088 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAACACCAGGAGG-AACCT---GGGG-GCAGGG-AGCGCGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642057 74 + 96509753 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAACACCAGGAGG-AACCT---GGGG-GCAGGG-AGCGCGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16093944 74 - 16982598 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAACACCAGGAGG-AACCT---GGGG-GCAGGG-AGCGCGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939148 74 - 3785965 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAACACCAGGAGG-AACCT---GGGG-GCAGGG-AGCGCGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609504 74 - 90373283 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAAACCAGGAGG-AACCT---AGGG-GCAGGG-AACGCGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487026 74 + 6149316 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAACACCAGGAGG-AACCT---GGGG-ACAGGG-AGCGCGCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719377 71 - 5823884 TCCTTGATGGTGGAAAACACAGATAGCACGAGGCAGGAGAAAACCAGGAGG-AACCT---GGGG-GCAGGG-A-CACG-- i colAng1.NW_012114444v1 C 0 I 2 s calJac3.chr5 57429645 74 + 159171411 TCC-TGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAGACCAGGAGG-AACCT---GGGGAGCAGGG-AACACATG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 394942 74 + 1231380 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAGACCAGGAGG-AACCT---GGGG-GCACGG-AGCGCGCG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1955703 74 + 11732439 TCCTTGATGGTGGAAAACACAGACAGCACGAGGCAGGAGAAGACCAGGAGG-AACCT---GGGGGGCA-GG-AACACGCG i aotNan1.NW_018500483v1 C 0 I 16 s otoGar3.GL873542 22171648 74 + 22939663 TCCTTGATGGTGGAGAACACGGACAGCACGAGGCAGGAGAAGACCAGCAGG-AACCT---GGAGCGCAGGGCAAGACG-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114675 77 + 182113224 TCCTTGATGGTGGAAAACACAGAAAGCACAAGGCAGGAGAAGACTAAAAGG-AACCTGCAGAAG-GTGAGA-GACACGCA i mm10.chr2 C 0 C 0 s canFam3.chr24 47089023 67 + 47698779 TCCTTGATGGTGGAGAAGACGGACAGCACGAGGCAGGAGAAGACCAGCAGG-AACCT----GGG-GCAGGG-CA------ i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=23.000000 s hg38.chr20_KI270871v1_alt 33259 2 + 58661 CT s rheMac8.chr10 91993150 1 - 92844088 -C i rheMac8.chr10 C 0 I 1 s chlSab2.chr2 89609578 1 - 90373283 -C i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5487100 1 + 6149316 -C i manLeu1.NW_012104365v1 C 0 I 1 s otoGar3.GL873542 22171722 2 + 22939663 CC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114752 2 + 182113224 GT i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272545 0 - 110113093 C e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e cebCap1.NW_016107870v1 395016 0 + 1231380 C e canFam3.chr24 47089090 0 + 47698779 C e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57429719 0 + 159171411 C e colAng1.NW_012114444v1 4719448 2 - 5823884 I e cerAty1.NW_012001373v1 2939222 0 - 3785965 C e macNem1.NW_012014244v1 16094018 0 - 16982598 C e macFas5.chr10 95642131 0 + 96509753 C e gorGor5.CYUI01015750v1 782813 0 - 1017659 C e panPan2.chr20 61370404 0 + 62195757 C e panTro5.chr20 65606474 0 + 66533130 C a score=7800.000000 s hg38.chr20_KI270871v1_alt 33261 1 + 58661 C s panTro5.chr20 65606474 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370404 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782813 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272545 1 - 110113093 C i nomLeu3.chr13 C 0 I 5 s macFas5.chr10 95642131 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094018 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939222 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4719450 1 - 5823884 C i colAng1.NW_012114444v1 I 2 C 0 s calJac3.chr5 57429719 1 + 159171411 C i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 395016 1 + 1231380 C i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22171724 1 + 22939663 C i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181114754 1 + 182113224 C i mm10.chr2 C 0 I 2 e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e canFam3.chr24 47089090 0 + 47698779 C e manLeu1.NW_012104365v1 5487101 1 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89609579 1 - 90373283 I e rheMac8.chr10 91993151 1 - 92844088 I a score=1204.000000 s hg38.chr20_KI270871v1_alt 33262 5 + 58661 TCAG-A s panTro5.chr20 65606475 5 + 66533130 TCAG-A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370405 5 + 62195757 TCAG-A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782814 5 - 1017659 TCAG-A i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 91993152 3 - 92844088 -CAG-- i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95642132 5 + 96509753 TCAGC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094019 4 - 16982598 TCAG-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939223 4 - 3785965 TCAG-- i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4719451 4 - 5823884 TCAG-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429720 4 + 159171411 TCAG-- i calJac3.chr5 C 0 I 1 s cebCap1.NW_016107870v1 395017 4 + 1231380 TCAG-- i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22171726 4 + 22939663 TCAG-- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181114757 4 + 182113224 TGGG-- i mm10.chr2 I 2 C 0 s canFam3.chr24 47089090 3 + 47698779 -GGG-- i canFam3.chr24 C 0 C 0 e nomLeu3.chr13 109272546 5 - 110113093 I e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e manLeu1.NW_012104365v1 5487101 1 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e chlSab2.chr2 89609579 1 - 90373283 I a score=17904.000000 s hg38.chr20_KI270871v1_alt 33267 8 + 58661 CAGGCCG-C-- s panTro5.chr20 65606480 9 + 66533130 CAGGCCGAC-- i panTro5.chr20 C 0 I 182 s panPan2.chr20 61370410 8 + 62195757 CAGGCCG-C-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782819 8 - 1017659 CAGGCCG-C-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272551 8 - 110113093 CAGGCCG-C-- i nomLeu3.chr13 I 5 C 0 s macFas5.chr10 95642137 8 + 96509753 CAGGCCA-C-- i macFas5.chr10 C 0 C 0 s calJac3.chr5 57429725 8 + 159171411 CGGGCCT-C-- i calJac3.chr5 I 1 C 0 s cebCap1.NW_016107870v1 395022 8 + 1231380 CGGGCCT-C-- i cebCap1.NW_016107870v1 I 1 C 0 s otoGar3.GL873542 22171730 8 + 22939663 CAGGCCA-G-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114761 8 + 182113224 CCAGCCA-T-- i mm10.chr2 C 0 C 0 s canFam3.chr24 47089093 10 + 47698779 CAGGCCG-GTC i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e manLeu1.NW_012104365v1 5487101 1 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4719455 0 - 5823884 C e chlSab2.chr2 89609579 1 - 90373283 I e cerAty1.NW_012001373v1 2939227 0 - 3785965 C e macNem1.NW_012014244v1 16094023 0 - 16982598 C e rheMac8.chr10 91993155 0 - 92844088 C a score=9420.000000 s hg38.chr20_KI270871v1_alt 33275 7 + 58661 AGCAGG---G s panTro5.chr20 65606671 7 + 66533130 AGCAGG---G i panTro5.chr20 I 182 C 0 s gorGor5.CYUI01015750v1 782827 7 - 1017659 AGCAGG---G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272559 7 - 110113093 AGCAGG---G i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95642145 7 + 96509753 AGCAGG---G i macFas5.chr10 C 0 C 0 s otoGar3.GL873542 22171738 10 + 22939663 CGCGGGTACG i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47089103 7 + 47698779 AGCAgg---g i canFam3.chr24 C 0 I 537 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114769 0 + 182113224 C e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e cebCap1.NW_016107870v1 395030 0 + 1231380 C e manLeu1.NW_012104365v1 5487101 1 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57429733 0 + 159171411 C e colAng1.NW_012114444v1 4719455 0 - 5823884 C e chlSab2.chr2 89609579 1 - 90373283 I e cerAty1.NW_012001373v1 2939227 0 - 3785965 C e macNem1.NW_012014244v1 16094023 0 - 16982598 C e rheMac8.chr10 91993155 0 - 92844088 C e panPan2.chr20 61370418 0 + 62195757 C a score=-3187.000000 s hg38.chr20_KI270871v1_alt 33282 28 + 58661 CAGCAGCATGG-CTGTGTCT--------------CCAGAACTC s panTro5.chr20 65606678 28 + 66533130 CAGCAGCATGG-CTGTGTCT--------------CCAGAACTC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782834 28 - 1017659 CAGCAGCATGG-CTGTGTCT--------------CCAGAACTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272566 28 - 110113093 CACCAGCATGG-CCGCGTCT--------------CCAGAACGC i nomLeu3.chr13 C 0 T 46 s macFas5.chr10 95642152 28 + 96509753 CACCAGCATGG-CTGCGTCT--------------CCAGAACGC i macFas5.chr10 C 0 C 0 s calJac3.chr5 57429733 2 + 159171411 ---------AG-------------------------------- i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 395030 2 + 1231380 ---------GG-------------------------------- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22171748 17 + 22939663 CGGCGGCCCGG-GGAGGT------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114769 43 + 182113224 GGTCAGTGCAGCCCGTGCCTATTAGCTAAAATGCCTAGAACTT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5487101 1 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e colAng1.NW_012114444v1 4719455 0 - 5823884 C e chlSab2.chr2 89609579 1 - 90373283 I e cerAty1.NW_012001373v1 2939227 0 - 3785965 C e macNem1.NW_012014244v1 16094023 0 - 16982598 C e rheMac8.chr10 91993155 0 - 92844088 C e panPan2.chr20 61370418 0 + 62195757 C a score=3908.000000 s hg38.chr20_KI270871v1_alt 33310 6 + 58661 AGGACC s panTro5.chr20 65606706 6 + 66533130 AGCACC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782862 6 - 1017659 AGGACC i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95642180 6 + 96509753 AGGACC i macFas5.chr10 C 0 T 50 s mm10.chr2 181114812 6 + 182113224 GAGACC i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109272594 46 - 110113093 T e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e cebCap1.NW_016107870v1 395032 0 + 1231380 C e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22171765 0 + 22939663 C e manLeu1.NW_012104365v1 5487101 1 + 6149316 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57429735 0 + 159171411 C e colAng1.NW_012114444v1 4719455 0 - 5823884 C e chlSab2.chr2 89609579 1 - 90373283 I e cerAty1.NW_012001373v1 2939227 0 - 3785965 C e macNem1.NW_012014244v1 16094023 0 - 16982598 C e rheMac8.chr10 91993155 0 - 92844088 C e panPan2.chr20 61370418 0 + 62195757 C a score=-10243.000000 s hg38.chr20_KI270871v1_alt 33316 10 + 58661 ---CCACTCCCCA s panTro5.chr20 65606712 7 + 66533130 -----ACTCCC-A i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782868 10 - 1017659 ---CCACTCCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272548 2 - 110113093 -----------AG i nomLeu3.chr13 T 46 C 0 s chlSab2.chr2 89609580 2 - 90373283 -----------CA i chlSab2.chr2 I 1 I 1 s manLeu1.NW_012104365v1 5487102 2 + 6149316 -----------CA i manLeu1.NW_012104365v1 I 1 I 1 s mm10.chr2 181114818 11 + 182113224 TTAGAGGGCCC-- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e cebCap1.NW_016107870v1 395032 0 + 1231380 C e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22171765 0 + 22939663 C e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57429735 0 + 159171411 C e colAng1.NW_012114444v1 4719455 0 - 5823884 C e cerAty1.NW_012001373v1 2939227 0 - 3785965 C e macNem1.NW_012014244v1 16094023 0 - 16982598 C e macFas5.chr10 95642186 50 + 96509753 T e rheMac8.chr10 91993155 0 - 92844088 C e panPan2.chr20 61370418 0 + 62195757 C a score=66503.000000 s hg38.chr20_KI270871v1_alt 33326 13 + 58661 CCAGGCCGCAGCA s panTro5.chr20 65606719 12 + 66533130 CCAG-CCGCAGCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370418 4 + 62195757 ---------AGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782878 13 - 1017659 CCAGGCCGCAGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272550 13 - 110113093 GCAGGCCGCAGCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993155 13 - 92844088 CCAGGCCACAGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642136 13 + 96509753 CCAGGCCACAGCA i macFas5.chr10 T 50 C 0 s macNem1.NW_012014244v1 16094023 13 - 16982598 CCAGGCCACAGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939227 13 - 3785965 CCAGGCCACAGCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609583 13 - 90373283 CCAGGCCACAGCA i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5487105 13 + 6149316 CCAGGCCACAGCA i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4719455 13 - 5823884 CCAGGCTGCAGCA i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22171765 9 + 22939663 ----GTCGCACCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114829 13 + 182113224 TCAGAGCATAGCA i mm10.chr2 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e aotNan1.NW_018500483v1 1955777 16 + 11732439 I e cebCap1.NW_016107870v1 395032 0 + 1231380 C e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M e calJac3.chr5 57429735 0 + 159171411 C a score=356925.000000 s hg38.chr20_KI270871v1_alt 33339 41 + 58661 GGGCACCAG--CATGGCCGCGTCTCCAGAACGCAGGACCCCAC s panTro5.chr20 65606731 39 + 66533130 GGGCAGCAG--CATG-CCGCATCTCCAGAACTCAGGaccc-ac i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370422 41 + 62195757 GGGCAGCAG--CATGGCCGCGTCTCCAGAACTCAGGACCCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782891 41 - 1017659 GGGCAGCAG--CATGGCCGCGTCTCCAGAACTCAGGaccccac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272563 41 - 110113093 GGGCACCAG--CATGGCCGCGTCTCCAGAACGCAGGACCCCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993168 41 - 92844088 GGGCACCAG--CATGGCTGCGTCTCCAGAACGCAGGACCCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642149 41 + 96509753 GGGCACCAG--CATGGCTGCGTCTCCAGAACGCAGGACCCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094036 41 - 16982598 GGGCACCAG--CATGGCTGTGTCTCCAGAACGCAGGACCCCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939240 41 - 3785965 GGGCACCAG--CATGGCTGCGTCTCCAGAACGCAGGACCCCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609596 41 - 90373283 GGGCACCAG--TATGGCTGCGTCTCCAGAATGCAGCACCCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487118 41 + 6149316 GGGCACCAG--CACGGCTGCGTCTCCAGAACGCAGGACCCCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719468 41 - 5823884 GGTCACCAG--CATGGCTGCGTCTCTAGAACGCAGGACCCCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429735 41 + 159171411 GGGCACCAG--AGTGGCTACGTCTCCAGAACACAGGACCCCAC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 395032 41 + 1231380 GGGCACCAG--TGTGGCTGCGTCTCCAGAACGCAGGACCCCAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1955793 39 + 11732439 GGGCACCAG--CGTGGCTGCGTCTCCAGAACGCAGGA--CCAC i aotNan1.NW_018500483v1 I 16 C 0 s otoGar3.GL873542 22171774 38 + 22939663 AGGCCACTG--TGTG---GGGTCTGCAGGAAGCCGGGCCCTGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181114842 43 + 182113224 GGGGGCCAGTCCACACCCTGTTTTCTGCTACCCAAGACTCCAC i mm10.chr2 C 0 I 3866 e dasNov3.JH567899 117299 931 + 555560 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=741078.000000 s hg38.chr20_KI270871v1_alt 33380 113 + 58661 TCCCCACCCACCC-----------------CACCAGAGCTCGCTCAG-----GCCAGAGGGCACCCCCATAGCCACCT---CCCGGGACCCTG-AACTCCACAGTGGCAGCTGCCCCCTCTAT----------------------------GCGCAGCTGCCC-CCT-----C s panTro5.chr20 65606770 95 + 66533130 tccccacccaccc------------------accAGAGCCCGCTC-G-----GCCAGAGGGC-CCCCAACAGCA--CT---CC--GGACC-TG-AACTCACAAGTGGCA----------CTGT----------------------------GCGCAGCTGCCC-CCC-----T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370463 103 + 62195757 TCCCCACCCACCC-----------------CACCAGAGCCCGCTCGG-----GCCAGAGGGCACCCCCACAGCCACCT---CCCGGGACCCTG-AACTCCACAGTGGCA----------CTGT----------------------------GCGCAGCTGCCC-CCT-----C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 782932 119 - 1017659 tccccacccaccccaccagagcccgctccccaccAGAGCCCGCTCGG-----GCCAGAGGGC-ACCCCACAGCCACCT---CCCGGGACCCTG-AACTCCACAGTGGCA----------CTGT----------------------------GCGCAGCTGCCC-CCT-----C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272604 103 - 110113093 TCCCCACCCACCC-----------------CACCAGAGCCCACTTGG-----GCCAGAGGGCACCCCCACAGCCACCT---CCCGGGACCCCG-AGCTCCACAGAGGCA----------CCGT----------------------------GTGCAGCTGCCC-CCT-----C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993209 103 - 92844088 TCCCCACCCGCCC-----------------CACCAGAGTCCACTCGG-----GCCAGAGGGCACCCCCACAGCCACCT---CCCGGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GCGCAGCTGCCT-CCT-----C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642190 103 + 96509753 TCCCCACCCGCCC-----------------CACCAGAGTCCACTAGG-----GCCAGAGGGCACCCCCACAGCCACCT---CCCGGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GCGCAGCTGCCC-CCT-----C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094077 103 - 16982598 TCCCCACCCGCCC-----------------CACCAGAGTCCACTAGG-----GCCAGAGGGCACCCCCACAGCCACCT---CCCGGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GCGCAGCTGCCC-CCT-----C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939281 103 - 3785965 TCCCCACCCGCCC-----------------CACCAGAGTCCACTCGG-----GCCGGAGGGCACCCCCACAGCCACCT---CCCGGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GCGCAGCTGCCC-CCT-----C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609637 103 - 90373283 TCCCCACCCGCCC-----------------CACCAGAGTCCACTCGG-----GCCAGAGGGCACCCCCACAGCCACCT---CCCGGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GTGCAGCTGCCC-CCT-----C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487159 103 + 6149316 TCCCCACCCGCCC-----------------CACCAGAGTCCACTCGG-----GCCAGAGGGCACTCCCACAGCCACCT---CCCGGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GCGCAGCTGCCC-CCT-----C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719509 103 - 5823884 TCCCCACCCACCC-----------------CGCCAGAGTCCACTCGG-----GCCACAGGGCACACCCACAGCCACCT---CCCAGGACCCCA-AACTCCACAGTGGCA----------CCGT----------------------------GCACAGCTGCCT-CCT-----C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429776 102 + 159171411 TCCCCACCCACCC-----------------CACCAGAGCCCACACCG-----GCCAGAGGGCACCCCT-CAGCCGTCT---CCTGGGACCCCGGAACTCCACAGTGGCA----------GGGT----------------------------GCGCAGCTGCCC-CCC------ i calJac3.chr5 C 0 I 4 s cebCap1.NW_016107870v1 395073 103 + 1231380 TCCCCACCCACCC-----------------CACCAGAGCCCAAACCG-----GCCAGAGGGCACCCCT-CAGCCGCCT---CCTGGGGCCCCAGAACTCCACGGTGGCA----------CGGT----------------------------GCGCAGCTGCCCACCC------ i cebCap1.NW_016107870v1 C 0 I 4 s aotNan1.NW_018500483v1 1955832 107 + 11732439 TCCCCAGCCACCC-----------------CACCAGAGCCCACACCG-----GCCAGAGCACACCCCT-CAGCCGCCT---CCTGGGACCCCGGAACTCCACGGTGGCA----------CGGT----------------------------GCGCAGCTGCCC-CCCAACCC- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171812 132 + 22939663 GCCC--GCCGCTC-----------------CAC--AAGCCAACGTGGGAAGAGCAGAGGGGCAGCCTTACAGCCGCCTCGCCCTGCCTCCCAG-GACCCCACAGAGACA----------CGGGTGATGGCGGTCTGGGGCAGCCACATGGAGTCTAGTTGCTT-C-------- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15547421 1521 + 16356641 M a score=113458.000000 s hg38.chr20_KI270871v1_alt 33493 15 + 58661 CAGGACGCACCCCC--C- s panTro5.chr20 65606865 15 + 66533130 CAGGACGCGCCCCC--C- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370566 15 + 62195757 CAGGACGCGCCCCC--C- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783051 15 - 1017659 CAGGACGCGTCCCC--C- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272707 15 - 110113093 CAGGACGCACCCCC--C- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993312 14 - 92844088 CAGGATGCA-CCCC--C- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642293 14 + 96509753 CAGGATGCA-CCCC--C- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094180 14 - 16982598 CAGGATGCA-CCCC--C- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939384 14 - 3785965 CAGGATGCA-CCCC--C- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609740 14 - 90373283 CAGGATGCA-CCCC--C- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487262 14 + 6149316 CAGGATGCA-CCCC--C- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719612 14 - 5823884 CAGGACGCA-CCCC--C- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429882 14 + 159171411 CAGGACGCG-CCCC--C- i calJac3.chr5 I 4 C 0 s saiBol1.JH378156 15548945 16 + 16356641 CAGGACGTG-CCCCCGC- i saiBol1.JH378156 M 1521 C 0 s cebCap1.NW_016107870v1 395180 14 + 1231380 CAGGATGCG-CCCC--C- i cebCap1.NW_016107870v1 I 4 I 23 s aotNan1.NW_018500483v1 1955939 14 + 11732439 CAGGACACG-CCCC--C- i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22171944 15 + 22939663 CAGGGTGCC-CAGC--CC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=168718.000000 s hg38.chr20_KI270871v1_alt 33508 24 + 58661 TCTCCACTCTGGCCCCTGCCCCTT s panTro5.chr20 65606880 20 + 66533130 TCTCCACTCTGGCCCT--CCCC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370581 24 + 62195757 TCTCCACTCTGGCCCCTGCCCCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783066 24 - 1017659 TCTCCACTCTGGCCCCTGCCCCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272722 24 - 110113093 TCTCCACTCTGGCCCCGGCCGCCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993326 23 - 92844088 TCTCCACTCTGG-CCCTGCCCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642307 23 + 96509753 TCTCCACTCTGG-CCCTGCCCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094194 23 - 16982598 TCTCCACTCTGG-CCCTGCCCCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939398 24 - 3785965 TCTCCACTCTGGCCCCCGCCCCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609754 24 - 90373283 TCTCCACTCTGGCCCCCGACCCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487276 24 + 6149316 TCTCCACTCTGGCCCCCGCCCCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719626 24 - 5823884 TCTCCACTCTGGCCCCCGCCCCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429896 23 + 159171411 TCTCCATGCCGG-CCCCGCCCCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15548961 23 + 16356641 TCTCCATGCCGG-CCCCGCCCCCT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1955954 23 + 11732439 TCTCCATGCTGG-CCCCGCCCCCT i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22171959 21 + 22939663 ---CCACCTCGATCCCACCCTCCT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 395194 23 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=1452275.000000 s hg38.chr20_KI270871v1_alt 33532 167 + 58661 CTGTCTGGTTTCAGCCTGGCAGCCTCATCCTTTGGCAACGTC-TCCAAAACT----CTCAGTCAAATGGGAACAGCAAGGCCTGCCCATCAAC-TGCTACA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACC-GATCAGCCTTC--CCCTCTCCTCA------CTCTC--GGCCAC s panTro5.chr20 65606900 171 + 66533130 CTGTCGGTTTTCAGCCTGGCAGCCTCATCCTTTGGCAACGTCGTCCAAAACTTCTGCAGAGTCAAATGG-AACAGCA-GGCCTGCCCATCAACATGCTACA-AAC-CAGGACAGCAGCAAAACCCCTGG------GGCAGAAGGCACC-GATCAGCCTTC--CCCTCTCCTCA------CTCTC--GGCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370605 169 + 62195757 CTGTCTGGTTTCAGCCTGGCAGCCTCATCCTTTGGCAACGTC-TCCAAAACTCT--CAGAGTCAAATGGGAACAGCAAGGCCTGCCCATCAAC-TGCTACA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACC-GATCAGCCTTC--CCCTCTCCTCA------CTCTC--GGCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783090 166 - 1017659 CTGTCTGGTTTCAGCCTGGCAGCCTCATCCTTTGGCAACGTC-TCCAAAACT----CTGAGTCAAATGGGAACAGCAAGGCCCG-CCATCAAC-TGCTACA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACT-GATCAGCCTTC--CCCTCTCCTCA------CTCTC--GGCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272746 170 - 110113093 CTGTCTGGTTTCAGCCTGGCAGCCTCATCCTTTGGCAACGAC-TCCAAAACTCT--CAGAGTCAAATGGGAACAGCAAGGCCCGCCCATCAAC-TGCTACA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACCTGATCAGCCTTC--CCTTCTCCTCA------CTCTC--GGCCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993349 168 - 92844088 CTGTCGGGTTTCAGCCTGGTAGCCTCATCCTTCGGCAACGTC-TCCAAAACTCT----GAGTCAAATGGGAACAGCAAGGCCCACCCATCGAC-GGCTGCA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACCGGATCAACCTTC--CCTGCTCCTCG------CTCTC--AGCCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642330 170 + 96509753 CTGTCGGGTTTCAGCCTGGTAGCCTCATCCTTCGGCAACGTC-TCCAAAACTCT--CAGAGTCAAATGGGAACAGCAAGGCCCACCCATCGAC-GGCTGCA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACCGGATCAACCTTC--CCTGCTCCTCG------CTCTC--AGCCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094217 169 - 16982598 CTGTCGGGTTTCAGCCTGGTAGCCTCATCCTTCGGCAACGTC-TCCAAAACTCT--CAGAGTCAAATGGGAACAGCAAGGCCCACCCATCGAC-GGCTGCA-AACACAGGA-ACATGC-AAACCCCTGG------GGCAGAAGGCACCGGATCAACCTTC--CCTGCTCCTCG------CTCTC--AGCCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939422 169 - 3785965 CTGTCGGGTTTCAGCCTGGTAGCCTCATCCTTCGGCAACGTC-TCCAAAACTCT--CAGAGTCAAATGGGAACAGCAAGGCCCACCCATCAAC-GGCTGCA-AACACAGGA-ACAAGC-AAAACCCTGG------GGCAGAAGGCACCGGATCAACCTTC--CCTGCTCCTCG------CTCTC--AACCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609778 169 - 90373283 CTGTCGGGTTTCAGCCTGGTAGCCTCATCCTTCGGCAGCGTC-TCCAAAACTCT--CAGAGTCAAATGGGAACAGCAAGGCCCA-CCATCAAC-GGCTGCA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACCGGATCAACCTTC--CCTGCTCCTCG------CTCTC--AGCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487300 170 + 6149316 CTGTCGGGTTTCAGCCTGGTAGCCTCATCCTTCGGCAACGTC-TCCAAAACTCT--CAGAGTCAAATGCTAACAGCAAGGCCCACCCATCAAC-GGCTGCA-AACACAGGA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACCAGATCAACCTTC--CCTGCTCCTCG------CTCTC--AGCCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719650 170 - 5823884 CTGTCAGGTTTCAGCCTGGTAGCCTCATCCTTCCGCAACGTC-TCCAAAACCCT--CAGAGTCGAATGGGAACAGCAAGGCCCACCCATCAAG-GGCTTCA-AACACAGAA-ACAAGCAAAACCCCTGG------GGCAGAAGGCACCCGATCAACCTTC--CCTGCTCCTCG------CCCTC--AGCCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57429919 169 + 159171411 CTGTCTGGTTTCAGCCTGGCAGCCTCATCCTTTGGGAAAGTC-TCCAAAA--CT--CTGAGTCAAATGGGAACAGCCAGGCCTGCCCATCAAC-TGCTGCA-GAAACAGAA-A-AAGCAACACCGCTGG------GGCAGAAGGCTCCAGATCAACCCAC--CCATCTCCTCA------CAGCCCGTGCCGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15548984 167 + 16356641 CTGTCTGGCTTCAGCCTGGCAGCCTCATCCTTCGGGAAAGTC-TCCAAAA--CT--CGGAGTCAAATGGGAACAGCCAGGCCTGCCCATCAGC-TGCTGCA-GAAGCAGGA-A-AAGCAACACCCTCGG------GGCAGAAGGCTCCAGACCAACCCTC--CCCTCCCCCCA------CAGTC--GCCCAT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 395217 168 + 1231380 GTGTCTGGGTCCAGCCTGGCAGCTTCAGCCTTCGGGAAAGTC-TCCAAAACTCT--CTGAGCCAAATGGGAACAGCCAGCCCTGCCCATCAAC-TGCTGCA-GAAGCAGAA-A-AAGCAACACCCCCGG------GGCAGAAGGCTCCGGACCAACCCTC--CCCTCTCCTCA------CACTC---GCCAA i cebCap1.NW_016107870v1 I 23 C 0 s aotNan1.NW_018500483v1 1955977 169 + 11732439 CTGTCTGGTTTCAGCCTGGCAGCCTCATCCTTTGGGAAAGTC-TCCAAAACTCT--CGGAGTCAAATGGGAACAGCCAGGCCTGCCCGTCAAC-TGCTGCA-GAAGCAGAA-A-AAGCAACACCCCCGG------GGCAGAAGGCTCCGGACCAACCCTC--CCATCTCCTCA------CACTC--AGCCAT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22171980 177 + 22939663 GAGTCTGACTTCATCCTGACAGCCTCATGCCTTGG-AAAGCC-TCCAAAAC-----TGGAGAAAAGGGGGTA----AAAGACTGCCTATCAAC-TGCTGCACAACCAAGGA-GACAGCAAGCCCCACAGCCGCCCCACAGACAGCATTCAATAACCCTTCATCCCTTTCTCTGGGAACCCTTTC--TCCCAT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 117299 931 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=1773905.000000 s hg38.chr20_KI270871v1_alt 33699 178 + 58661 CT------CCTCCAGACCCCAACGCAGAGGGCT-TCTCTCTGCCAGTTAAACCCGGAGCCAAGCAACAGGAGCTCCTCGGATCACCTTCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCCGTTTCTCCTTCCTCCCGGGTTGCAGGCACCTCCT-----CCCGCCAGTGACTTCCACCATGATTGCTC s panTro5.chr20 65607071 178 + 66533130 CT------CCTGCAGACCCCAACGCAGAGGGCT-TCTCTCTGCCAGTTAAACCTGGAGCCAAGCAACAAGAGCTCCTCGGATCACCTTCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCCGTTTCTCCTTCCTCCCGGGTTGCAGGCACCTCCT-----CCTGCCAGTGACTTCCACCATGATTGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370774 178 + 62195757 CT------CCTGCAGACCCCAACGCAGAGGGCT-TCTCTCTGCCAGTTAAACCTGGAGCCAAGCAACAAGAGCTCCTCGGATCACCTTCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCCGTTTCTCCTTCCTCCCGGGTTGCAGGCACCTCCT-----CCTGCCAGTGACTTCCACCATGATTGCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783256 178 - 1017659 CT------CCTCCAGACCCCAACACAGAGGGCT-TCTCTCTGCCAGTTAAACCCAGAGCCAAGCAACAAGAGCTCCTTGGATCACCTTCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCCGTTTCTCCTTCCTCCCGGGTTGCAGGCACCTCCT-----CCCGCCAGTGACTTCCACCATGATTGCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109272916 178 - 110113093 CT------CCTCCAGACCCCAACGCAGAGGGCT-TCTCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTCGGATCACCTTCTTTCTGGCCTCATCCTGGCTGCCAGGAGGCTCAGTTTCTCCTTCCTCCCAGGTTGCAGGCACCTCCT-----CCCGCCAGTGACTTCCACCGTGATTGCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993517 176 - 92844088 CT------CCTCCAGACCCCAACGCAGAGGGCT---TCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTGGGATCACCACCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTGTCTCCTTCCTCCTGGGTTGCAGGTGCCTCCT-----CCCACCAGTGACTTCCACCGTGATTGCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642500 176 + 96509753 CT------CCTCCAGACCCCAACGCAGAGGGCT---TCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTGGGATCACCACCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTGTCTCCTTCCTCCTGGGTTGCAGGTGCCTCCT-----CCCACCAGTGACTTCCACCGTGATTGCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094386 176 - 16982598 CT------CCTCCAGACCCCAACGCAGAGGGCT---TCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTGGGATCACCACCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTGTCTCCTTCCTCCTGGGTTGCAGGTGCCTCCT-----TCCACCAGTGACTTCCACCGTGATTGCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939591 176 - 3785965 CT------GCTCCAGACCCCAGCGCAGACGGCT---TCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTGGGATCACCACCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTGTCTCCTTCCTCCTGGGTTGCAGGCGCCTCCT-----CCCACCAGTGACTTCCACCGTGATTGCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89609947 176 - 90373283 CT------CCTCCAGACCCCAATGCAGAGGGCT---TCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTGGGATCACCACCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTTTCTCCTTCCTCCTGGGTTGCAGGCGCCTCCT-----CCCACCAGTGACTTCCACCGTGATTGCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487470 176 + 6149316 CT------GCTCCAGACCCCAGCGCAGACGGCT---TCTCTGCCAGTTAAATCCGGAGCCAAGCAACAAGAGCTCCTGGGATCACCACCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTGTCTCCTTCCTCCTGGGTTGCAGGCGCCTCCT-----CCCACCAGTGACTTCCACCGTGATTGCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719820 176 - 5823884 CT------CCTCCAGACCCCAACGCAGACGGCT---TCTCTGCCAGTTAAATCCAGAGCCAAGCAACAAGAGCTCCTGGGATCACCTCCTTTCCAGCCTCGTCCTGGCTGCCAGGAGGCTCAGTTTCTCCTTCCTCCTGGGTTGCAGGCGCCTCCT-----CCCACCAGTGACTTCCACCGTGATTGCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57430088 183 + 159171411 GTATCTCCTCTCCAGACCCAGACGCAGAGAGCT-TCCCTCTGCCAGTCAAATCCGGAGCCAAGCAACAAGAGCTCCTCAGATCATCTGCTTTCCAGCCTCTCCCTGGCTGCCAGGAGACTCAGTTTCTCCTTCCTCCT-GGTTGCAGGCACCTCCT-----CCAGCCAGTGATTCCCACTGTGACTGCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15549151 183 + 16356641 CTATCTCCTCTCCAGACCCTGATGCAGAGAGCT-TCCCTCTGCCAGTCAAATCCAGAGCCAAGCGCCAAGAGCTCCTTGGGTCACCTGCTTTCCGGCCTCTCCCTGGCTGCCAGGAGGCTCAGTTTCTCCTTCCTCCT-GCTCACAGGCGCCTCCT-----CCTGCCAGTGATTCCCACCGTGACTGCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 395385 176 + 1231380 CTATCTCCTCTCCAGACCCAGACGCAGAGAGCT-CCCCCCTGCCAATCAAATCCAGAGCCAAGCAACAAGAGCTCCTCGGGTCGTCTTCTTTCCGGCCTCTCCCTGGCTGCCAGGAGGCTCAGTTT-------CTCCT-GGTCACAGGCACCTTCT-----CCTGCCAGTGATCCCCACGGTGACTGCTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1956146 183 + 11732439 CTAGCTCCCCTCCAGACCCAGACGCAGAGAGCT-TCCCTCTGCCAGTCAAATCCGGAGCTAAGCAATGAGAGCTCCCTGGATCATCTTCTTTCCGGCCTCTCTTTGGCTGCCAGGAGGCTCAGTTTCTCCTTCCTCCT-GGTCACAGGCACCTCCT-----CCTGCCAGTGATTCCCACCGTGACTGCTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22172157 162 + 22939663 TT----CCTCTTCAGTCTCAGAAGCACAAAACT------TTTCCAGTTAAATCCTGTGCTAAGTAACAAGATCTC---AGATCATCTTCATTCTTGTCTTGGCCTGGCTGCCAGGA---------------TCCTTGTAAGTTGCTGGAGCCTCCTGCCCACCAGCCAAGGGTTTCTGCCACAGTTACTC i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 118230 177 + 555560 -------CCCCTCCGGCTCTGCAGCAGGACGCCTTCTTTCTTTCAATCATCTCTGGGGCTAGGCCACGGGCACTACCCAGATCATCCCCTTTCTAGCTTTGCCCTGGCTACTGGGAACCTCACAGT-TGATTTCTTGTAAGCTGTAGGACCCTTCC-----CCGGCCTAGGTTTTCTGCCGTAATTATTC i dasNov3.JH567899 I 931 I 2686 e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=1594834.000000 s hg38.chr20_KI270871v1_alt 33877 211 + 58661 -TTCCCATTCACGTCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAATTTCCCCTCAGATGCTCAAGTTCAC-ACCCCACCAAAATTCCCCCAAATGCATGTGGGTAtttttgtt---tttgtttgttttgttttgttttg-----agatacagtttcact-tgtcgcgcaggctggagtgcaatggcgtgatcttggctcgctgcaacctccgcctcc s panTro5.chr20 65607249 216 + 66533130 -TTCCCATTCACGTCCCAGGCGATTACTTCA----CTCACTGATCCTTCTTCAATTTCCCCTCAGATGCTCAAGTTCAC-GCCCCACCAAAATTCCCCCAAATGCATGTGGGTTTttttgtt---tttgtttgttttgttttgttttgttttgagatagagtttcact-tgtcgcgcaggctggagtgcaatggcgtgatcttggctcgctgcaacctccgcctcc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61370952 216 + 62195757 -TTCCCATTCACGTCCCAGGCGATTACTTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGATGCTCAAGTTCAC-CCCCCACCAAAATTCCCCCAAATGCATGTGGGTTTttttgtt---tttgtttgttttgttttgttttgttttgagatagagtttcact-tgtcgcgcaggctggagtgcaatggcgtgatcttggctcgctgcaacctccgcctcc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783434 214 - 1017659 -TTCCCATTCACATCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAATTTCCCTTCAGATGCTCAAGTTCAC-GCCCCACC-AAATTCCCCCAAATGCATGTGGGTTTTTTTGtt---tttgtttg-tttgttttgttttgttttgagatagagtttcact-tgttgcgcaggctggagtgcaatggcgtgatcttggctcgctgcaacctccgcctcc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109273094 218 - 110113093 -TTCCCATCCACGTCCCATGCGATTACCTCA----CTCACTGATCCTTCTTCAATTTCCCCTCAGATGCTCAAGTTCAC-GCCCCACCAAAATTCCCCCAAATGCATGTGGGTTTttttgttttgtttttttg-tttgttttgttttgttttgagacagagtttcgct-tgtcgcgcaggctggagtgcaatggcatgatcttggctcactgcaacctccgcctcc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993693 200 - 92844088 -TTCCCATCCACGTCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGACGCTCAAGTTCAT-GCCCCACCAAAATTCCCCCAAATGCATGt-----------tt---tttg-----tttgttttgttttgttttgagatagagcttcact-tgtcacgcaggctggagtgaaatggcgcgatctcggctcactgcgagctccgcctcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642676 200 + 96509753 -TTCCCATCCACGTCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGACGCTCAAGTTCAT-GCCCCACCAAAATTCCCCCAAATGCATGt-----------tt---tttg-----tttgttttgttttgttttgagatagagcttcact-tgtcacgcaggctggagtgaaatggcgcgatctcggctcactgcgagctccgcctcc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094562 200 - 16982598 -TTCCCATCCACGTCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGACGCTCAAGTTCAT-GCCCCACCAAAATTCCCCCAAATGCATGt-----------tt---tttg-----tttgttttgttttgttttgagatagagcttcact-tgtcacgcgggctggagtgaaatggcgcgatctcggctcactgcgagctccgcctcc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939767 200 - 3785965 -TTCCCATCCACGTCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGACGCTCAAGTTCAC-GCCCCACCAAAATTCCCCCAAATGCATGt-----------tt---tttg-----tttgttttgttttgttttgagatagagtttcact-tgtcatgcaggctggagtgaaatggcgcgatctcggctcactgcgagctccgcctcc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89610123 205 - 90373283 -TTCCCATCCACGTCCCACGCGATTACCTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGATGCTCAAGTTCAC-GCCCCACCAAAATTCTCCCAAATGCATGt-----------tt---tttgtttgttttgttttgttttgttttgagatagagtttcact-tgtcacgcaggctggagtgaaatggcccgatctcggctcactgcaagctccgcctcc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487646 200 + 6149316 -TTCCCATCCACGTCCCACGCAATTACCTCA----CTCACTGATCCTTCTTCAACTTCCCCTCAGACGCTCAAGTTCAC-GCCCCACCAAAATTCCCCCAAATGCATGt-----------tt---tttg-----tttgttttgttttgttttgagatagagcttcact-tgtcacgcaggctggagtgaaatggcgcgatctcggctcactgcgagctccgcctcc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4719996 196 - 5823884 -TTCCTGTCCACGTCCCACGCGGTTACCTCA----CTCACCGATCCTTCTTCAACTTCCCCTCAGACGCTCAAGTTCAC-ACCCCACCAAAATTCCCCCAAATGCATGt-----------tt------------tttgttttgtttggttttgagatagagtttcact-tgtcacgcaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57430271 190 + 159171411 -TTCCCATCCTCTTCCCTCAGGACCATCTGA----CTCACTAA-CCCTTTTCAACCTCCCCTCAGATGCTCAAGTTCACAGCCACACCAAAATTCTCCCAAATATATG------------TA---Gttg--------------tttttttttcagacagagtttcactctgtcac-caggctggagttcagtggcatgatctcggctcactgcaacctccacctcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15549334 198 + 16356641 -TTCCCACCCTCTTCCCACAGGACCACCTGACTCTCTCTCTAA-CCCTTTTCAACCTCCCCTCAGATGGTCAAGTTCTCAGCCACACCAAAATTCTCCCAAATACATG------------TA---GTTG----------GTGCTGttttttccagacagagtttcgctctgtcac-caggctggagtgcagtggcacgatctcggctcactgcaacctctaccccc i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 395561 190 + 1231380 -TTCCCATCCTCTTCCCACGGGACCACCTGA--CGCTCACTAG-CCCTTTCCAACCTCCCCTCAGATGATCAAGTTCACAGCCACACCTAAATTCTCCCAAATATATG------------AA---Gttg----------------tttttttcagaccgagtttcgctctgtcac-caggctggagtgccacggcacaatctcagctcaccgcaacctccacctcc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1956329 186 + 11732439 -TTCCCATCCTCTTCCCACGGGACCA------------------CCCTCTTCAACCTCCCCTCAGACGCTCAAGTTCACAGCCACACCAAAATTCTCCCAAATACGTG------------TA---Gttg-----ttttttttttttttttttcagacagagtctcgctctgtcac-caggctggagtgcagtggcgtgatctcggctcactgcaacctccaccttc i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22172319 124 + 22939663 TTTTCCATCATCCTCCCTTTTTGATATCT------CTTATTGATCCTTTTTCCACTGTTCC--------TCAAGTTCATGGTCCCACCAAAATTCTCCCAAATGC---------------TC-----------------------------------------------TATCGC------------------------TTTCAGCC--ATGCAGCTCCCTCCTCT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=1236450.000000 s hg38.chr20_KI270871v1_alt 34088 131 + 58661 cgggttcaagcaattctcccgcctcagcctccagagttgctgggattacaggcatgtgccaccacaccaggctaatttttgtatttttttagtggagatggggtttcatcacattggccaggctagtctcg s panTro5.chr20 65607465 131 + 66533130 caggttcaagcaattctcctgcctcagcctccagagttgctgggattacaggcatgtgccaccacaccaggctaatttttgtatttttttagtggagatggggtttcatcatattggccaggctggtctcg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371168 131 + 62195757 caggttcaagcaattctcctgcctcagcctccagagttgctgggattacaggcatgtgccaccacaccaggctaatttttgtatttttttagtggagatggggtttcatcatattggccaggctggtctcg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783648 130 - 1017659 tgggttcaagcaattctcctgcctcagcttccagagttgctgggattataggcatgtg-caccacaccaggctaatttttgtatttttttagtggagatggggtttcatcatattggccaggctggtctcg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109273312 130 - 110113093 cgggttcaagcaatcctcctgcctcagcctccagagttgctgggattacaggcgcgcgccaccacaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccaggctggtctcg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91993893 130 - 92844088 caggttcaagcgattctcctgcctcagcctccaggggagctgggattacaggcatgtgccaccaaaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccaggctggtctcg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95642876 130 + 96509753 caggttcaagcgattctcctgcctcagcctccaggggagctgggattacaggcatgtgccaccaaaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccgggctggtctcg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094762 130 - 16982598 caggttcaagcgattctcctgcctcagcctccaggggagctgggattacaggcatgtgccaccaaaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccgggctggtctcg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2939967 130 - 3785965 caggttcaagcgattctcctgcctcagcctccaggggagctgggattacaggcatgtgccaccaaaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccgggctggtctcg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89610328 130 - 90373283 caggttcaagtgattctcctgcctcagcctccaggggagctgggattacaggcatgtgccaccaaaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccgggctggtctcg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487846 130 + 6149316 caggttcaagcgattctcctgcctcagcctccaggggagctgggattacaggcatgtgccaccaaaccaggctaatttttata-ttttttagtggagatggggtttcatcatattggccgggctgctctcg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720192 130 - 5823884 caggttcaagcgattctcctgcctcagcctccaggggagctgggattacaggcgtgtgccaccacaccaggctaatttttgta-ttttttagtggagatggggtttcatcatattggccgggctggtctcg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57430461 130 + 159171411 cgggttcaggcgattctcctgcctcagcctcccaagtacctgggattacaggcgtccgccaccacgcccagctaattcttgta-ttttttagtgcagacagggtttcaccatattggccaggctggtctcg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15549532 130 + 16356641 caggttcaggcgattctcctgcctcagcctcccgagttgctgggatgacaggtgagcaccaccacgcccggctaattcttgta-ttttttagcggagacagagtttcaccacattggccaggctggtctcg i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 395751 130 + 1231380 cgggttcaggcgattctcctgcctcagtctcctgagtagctgggactacaggctcgcaccgccacacccagctaattcttgta-ttttttaatggagacagggtttcaccatattggccaggctagtctcg i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1956515 130 + 11732439 caggttcaggcaattctcctgcctcagcctcccaagtagctgggattataggctcgcaccaccacgcccagctaattcttgta-ttttgtagtggagacaggggttcaccatattggccaagttggtctca i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22172443 0 + 22939663 C a score=4268991.000000 s hg38.chr20_KI270871v1_alt 34219 488 + 58661 aacacctgggctcaagtgatgctcccgcctcggccccccaaagggctgggattacagtcatgagctaccatgctcggccCAAATGCGTGACTTTTTCTCAGCCCTGCATTCTCCTCTGATACAAGCGACTCTGCTACACTTGCTCCCTTGCCCACCCCAGGAAGCTGCAGACAGGAGGAGCCCGCTAGCCCCCG-AAGACCCTGCCGCGGGAACCCGGCTTGTGG-CTGCAACAAGGCCACCCACA--TAGAAGAGACATAGAAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCAACCCAGAGCCTCAAGCTGCCGCTTTGGCAGGAAAGCC----------------------AACTCCCGCGTGCTGAAGTCACTGAATGCACAC-----CAGAGAG-AAACCCACTTCGCAGGAAGCAAATGCTTTGTCTCATTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACGTC------CAGGTCCTTCGTCACAGCCATAAAGGAGGC s panTro5.chr20 65607596 488 + 66533130 aacacctgggctcaagtgatgctcccgcctcggcaccccaaagggctgggattacagttgtgagccaccatgcttggccCAAATGCATGACTTTTTCTCAGCCCTGCATCCTCCTCTGATACAAGCGACTCTGCTACACTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACAGGAGGAGCCCGCTAGCCCCCG-AAGACCCTGCCGTGGGAACCCGGCTTGTGG-CTGCAACAAGGCCACCCACA--TAGAACAGACATAGAAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCAACCCAGAGCCTCAAGCTGCCGCTTTGGCAGGAAAGCC----------------------AACTCCCGCGTGCTGAAGTCACTGAATGCACAC-----CAGAGAG-AAACCCACTTCGCAGGAAGCAAATGCTTTGTCTCATTTACACTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACGTC------CAGGTCCTTCGTCACAGCCATAAAGGAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371299 488 + 62195757 aacacctgggctcaagtgatgctcccgcctcggcaccccaaagggctgggattacagtcgtgagccaccatgcttggccCAAATGCATGACTTTTTCTCAGCCCTGCATCCTCCTCTGATACAAGCGACTCTGCTACACTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACAGGAGGAGCCCGCTAGCCCCCG-AAGACCCTGCCGTGGGAACCCGGCTTGTGG-CTGCAACAAGGCCACCCACA--TAGAATAGACATAGAAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCAACCCAGAGCCTCAAGCTGCCGCTTTGGCAGGAAAGCC----------------------AACTCCCGCGTGCTGAAGTCACTGAATGCACAC-----CAGGGAG-AAACCCACTTCGCAGGAAGCAAATGCTTTGTCTCATTTACACTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACGTC------CAGGTCCTTCGTCACAGCCATAAAGGAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 783778 488 - 1017659 aacacctgggctcaagtgatgctcccgcctcggccccccaaagggctgggattacagtcgtgagccaccatgctcggccCAAATGCATGACTTTTTCTCAGCCCTGCATCCTCCTCTGATACAAGCGACTCTGCTACACTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACAGGAGGAGCCCACTAGCCCCCG-AAGGCCCTGCCGTGGGAACCCGGCTTGTGG-CTGCAACAAGGCCACCCACA--TAGAAGAGACATAGAAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCAACCCAGAGCCTCAAGCTGCCGCTTTGGCAGGAAAGCC----------------------AACTCCCGCGTGCTGAAGTCACTGAATGCACAC-----CAGAGAG-AAACCCACTTCGCAGGAAGCAAATGCTTTGTCTCATTTACACTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGATGTGTCCAACGTC------CAGGTCCTTCGTCACAGCCATAAAGGAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109273442 479 - 110113093 aacacctgggctcaagtgatcctcccacctcggcccctcaaagggctgggattacaggcgtgagccaccatgctcggccCAAATGCATGACTTTTTCTCAGCCCTGCATCCTCCTCTGATACACACAA--CTGCTACACTTGCTCCCTTGCCCACCCCAGGAAGCTGCAGACAGGAGGAGCCCACTAGCCCCCA-AAGACCCTGCCGTGGGAACCCGGCTTGTGG-CTGTAACAAGGCC---------CAGAAGAGACATAGAAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCCGCCGCCTTGGCAGGATAGCC----------------------AACTCCCGCGTGCTGAAGTCACTGAATGCACAC-----CAGAGGG-AAACCCACTTCACAGGAAGCAAATGCTTTGTCTCATTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGATGTGTCCAACGTC------CAGGTCCTTCGTCACAGCCATAAAGGAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91994023 476 - 92844088 aacgcctgggctcaagtaatcctcccgcctcggccccccaaagggctgggattacaggcgtgagccaccatgcttggccCAAATGCATGACTTCTCCTCAGCCCTGCATCCTCCTCTGATACAAGCGGCTCTGCTACGCTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACGGGAGGAGCCCGCCA-CCCCCC-AAGACCCTGCCGCGGGAACCCGGCTTGT------------GGCCACCCACG--TAGTAGAGACACAGCAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCTGCCGCTGTGGCAGGAAAGCC----------------------AGCTCCGGCGTGCTGAAGTCGCCGGACACACAC-----CAGAGAG-AAACCCACTTCGCGGGAAGCAAACGCTTTGTCCCGTTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACATC------CAAGTCCTTGGTCACAGCCATAAAGGAGGC i rheMac8.chr10 C 0 I 70 s macFas5.chr10 95643006 476 + 96509753 aacgcctgggctcaagtaatcctcccgcctcggccccccaaagggctgggattacaggcgtgagccaccgtgcttggccCAAATGCATGACTTCTCCTCAGCCCTGCATCCTCCTCTGATACAAGCGGCTCTGCTACGCTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACGGGAGGAGCCCGCCA-CCCCCC-AAGACCCTGCCGCGGGGACCCGGCCTGT------------GGCCACCCACG--TAGAAGAGACACAGCAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCTGCCGCTGTGGCAGGAAAGCC----------------------AGCTCCGGCGTGCTGAAGTGGCCGGACACACAC-----CAGAGAG-AAACCCACTTCGCGGGAAGCAAACGCTTTGTCCCGTTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACATC------CAAGTCCTTGGTCACAGCCATAAAGGAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16094892 476 - 16982598 aacgcctgggctcaagtaatcctcccgcctcggccccccaaagggctgggattacaggcatgagccaccatgcttggccCAAATGCATGACTTCTCCTCAGTCCTGCATCCTCCTCTGATACAAGCGGCTCTGCTACGCTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACGGGAGGAGCCCGCCA-CCCCCC-AAGACCCTGCCGCGGGAACCCGGCTTGT------------GGCCACCCAAG--TAGAAGAGACACAGCAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCTGCCGCTGTAGCAGGAAAGCC----------------------AGCTCCGGCGTGCTGAAGTCGCCGGACACACAC-----CAGAGAG-AAACCCACTTCGTGGGAAGCAAACGCTTTGTCCCGTTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACACC------CAAGTCCTCGGTCACAGCCATAAAGGAGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940097 481 - 3785965 aacgcctgggctcaagtaatcctcccgcctcggccccccaaagggctgggattacaggcgtgagccaccatgcttggccCAAATGCATGACTTCTCCTCAGCCCTGCATCCTCCTCTGATGCAAGCGGCTCTGCTACGCTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACGGGAGGAGCCCGCCA-CCCCCC-AAGACCCTGCCACGGGAACCCGGCTTGT------------GACCACCCACG--TAGAAGAGACACAGCAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCTGCCGCTGTGGCAGGAAAGCC----------------------AGCTCCGGCGTGCTGAAGTCACCGGacacacacacacacacagag-aaacccacTTCGCGGGAAGCAAACGCTTTGTCCCGTTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGGCGTGTCCAACATC------CAGGTCCTTGGTCACAGCCATAAAGGAGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89610458 477 - 90373283 aacgcctgggctcaagtaatcctcccgcctcggcccccaaaagggctgggattacaggcgtgagccaccatgcttggccCAAATGCGTGACTTCTCCTCAGCCCTGCATCCTCCTCTGACACAAGCAGCTCTGCTATGCTTGCTCCCTTGCCCGCCCCAGAAAGCTGCAGACGGGAGGAGCCCGCCAGCCCCTG-AAGACCCTGCTGCGGGAACCCGGCTTGT------------GGCCACCCACG--TAGAAGAGACATAGCAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCTGCCGCTTTGGCAGGAAAGCC----------------------AGCTCCGGCGTGCTGAAGTCACTGGACACACAC-----CAGAGAG-AAACCCACTTCGCGGGAAGCAAACGCTTTGTCCCGTTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAGCATC------CAGGTCCTTGGTCACAGCCATAAAGGAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5487976 479 + 6149316 aacgcctgggctcaagtaatcctcccgcctcggccccccaaagggctgggattacaggcgtgagccaccatgcttggccCAAATGCATGACTTCTCCTCAGCCCTGCATCCTCCTCTGATACAAGCGGCTCTGCTACGCTTGCTCCCTTGCCCACCCCAGAAAGCTGCAGACGGGAGGAGCCCGCCA-CCCCCC-AAGACCCTGCCGCGGGAACCCGGTTTGT------------GGCCACCCACG--TAGAAGAGACACAGCAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCAAGCTGCCGCTGTGGCAGGAAAGCC----------------------AGCTCCGGTGTGCTGAAGTCACCGGACACACAC--ACACAGAGAC-AAACCCACTTCGCGGGAAGCAAATGCTTTGTCCCGTTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGCACGTGTCCAACATC------CAGGTCCTTGGTCACAGCCATAAAGGAGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720322 475 - 5823884 aacgcttgggctccagtaatcctcccgcctcggccccc-aaagggctgggatcacaggcgtcagccgccatgcTT-GCCCAAATGCCTGACTTTCTCTCAGCCCTGCACCCTCCTCTGATACAAGCGGCTCTGCTACGCCTGCTCCCTTGCCCACCCCAGACAGCTGCAGATGGGAGGGGCCCGCCG-CCCCCCGAAGACCCTGCCGCGGGAACCCGGCTTGC------------GGCCACCCACG--TAGAAGAGACAGAGAAGATCTCCCAGCTCTTCCTGGGAGCAAAGCTGTGCCACCCAGAGCCTCCAGCTGCCGCTTTGGCAGGAAAGCC----------------------AGCTCCGGCGTGCCGAAGTCACTGAACACACAC-----CAGAGAG-AAACCCACTTCGCGGGAAGCAAATGCTTTGTCCCATTTACATTTTTC-GCAGGTGTTCTGGGATGTGAAGGGGACGTGTCCAACATC------CAGGTCCTTGGTCACAGCCATAAAGGAGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57430591 453 + 159171411 aacttttggactcaggtgatcctcctgcctcggcccagcaaagggctgggattacaggtgtgagccacctcgccccgccCAGACGTGTGACTTTTCCTCGGCCCTGCGTCCTCCTCTGATACAAGCAGCTCTGATTCACTTGCTCCCTTGCCCA-CCCAGAAAGCTGCAGACAGGAGGTGCCTG----CCCGGC--------------------------TGTGG-CTGCAGCAAGGCCACCCACA--TAAAAGAGAC--AGAAAATCTCCCAGCTTTTCCTGGGAGCAAAGCTGAGCGTCCCGGAGCCTCAAGCTGCTGCTTTGGCAGGAAAG-C----------------------AGCCCCCGC-CCTTGAAGTCACGG-AAGCGCAC-----GAGAGAG-AAACCCACTTCTCAGGAAGCAAATGCTTCATCTCCTTTACACCTCTC-ACATGTGTCCTGGGATGTGCAGGGGACGTGTCTGACATC------CGGGTCCTTAGTCACAGCCATAACGGAGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15549662 454 + 16356641 aactcctggactcaggtgatcctcctgcctcggcccagcaaagcactgggattacaggtgtgagccaccgcgcccggccCAAATGCGTGACGTTTTCTCGGCCCTGCGTCCTCCTCTGATACAAGTGGCTGTGATTCACTTGCTCCCTTGCCCA-CCCAGAAAGCTGCAGACGGGAGGTGCCTG----CCCAGC--------------------------TGTGG-CTGCAGCAAGGCCACCCACA--TAGAAGAGAC--AGAAAATCTCCCAGCTCTTCCTGGGAGCAAAGCTGAGCCTCCCAGAGCCTCAAGCTGCCGCTTCGGCAGGAAAG-C----------------------AGCCCCCGC-CGTGGAAGTCACGGAAAGCACGC-----GAGAGAG-AAACCCACTTCTCAGGAAGCAAATGCTTCATCCCCTTGCCATTTCTC-ACACGTGTCCTGGGATGCGCAGGGGACGTGTCCAACGTC------CGGGTCCTTGGCCACAACCATAGCGGAGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 395881 454 + 1231380 aacttctggactcaggtgatcctcctgcctcggcccagcaaagcgctgggattacaggtgtgagccaccgcgcccagccCAAATGCGTGACTTTTTCTCGGCCCTGCATCCTCCTCTGATACAAGCGGCTCTGATTCACTTGCTCCCTTGCCCA-CCCAGAAAGCTGCAGACGGGAGGTGCCTG----CCCGGC--------------------------TGTGG-CTGCAGCAAGGCCACCCACA--TAGAAGAGTC--AGAAAATCTCCCAGCTCTTCCTGGGAGCAAAGCTGAGCGTCCCGGAGCCTCAAGCTGCCGCTTTGGCAGGAAAG-C----------------------AACCCCCGC-CGCTGAAGTCACGGAAAGCACAT-----GAGAGAG-AAACCCACTTCTCAGGAAGCAAATGCTTCATCCCCTTTCCATTTCTC-ACACATGTCCTGGGACGTGCAGGGGGCGTGTCCAACGTC------CGGGTCCTCGGTCACAGCCATAATGGAGGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1956645 455 + 11732439 aactcctggactcaggttatcctcctgcctcggcccagcaaagggctgggattacaggtgtgagccaccgcacccagccCAAATGCGTGACTTCTTCTCGGCCCTGCGTCCTCCTCTGATACAAGGGGCTCTGATTCACTTGCCCCCTTGCCCA-CCCAGAAAGCTGCAGACGGGAGGTGCCTG----CCCGGC--------------------------TGTGG-CTGCAGCAAGGCCACCCACA--TAGAAGAGAC--AGCAAATCTCCCAGCTCTTCCTGGGGGCAAAGCTGAGCGTCGCGGAGCCTCAGGCTGCCGCTATGGCAGGAAAG-C----------------------AGCCCCCGC-CGCTGAAGTCACGGAAAGCACAC-----GAGAGAGAAAACCCACTTCTCAGGAAGCAAATGCTTCACCCCCTTTATGTTTCTC-ACACGTGTCCTGGGATGTGCAGGAGATGTGTCCAACGTC------CGGGTCCTTGGTCACAGCCATGACAGAGGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22172443 375 + 22939663 GACACATCTGCTC--------------CCTTGACCCACCCCAGGA-----------------AGCT----------------------------------------------------------------------------------------------------GCAGCCAGGAGGCGCCTACTG-CCCC---AAGAACCTGCCAAGGGAGCCCAGCTTGTGGCCCATGACAAGGCCACCCACAAGTGGCCTAAACACACGTGATCACCT--CACTTCCGGGGAGCAAAGCTATGCGTCGC--AGCTTCAAGCTGAAGTTTAGGCAGGAAGGCCATGGTGGGAGGGCAGGAAAGCAAACTCCCACACGCTGAAGTCACTGA--GCATGT-----TAGA----AAACCCACTTTTTGTGAAGCAAATCATTTGTTTCATTTGCATTTTTCTGCAGGTGTCCTGGAAGATGCAGGGG-CATGTTCAATGTCTGGTCACAGGTCCTTGGTCACAGCTATAAATAAGC- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=231897.000000 s hg38.chr20_KI270871v1_alt 34707 39 + 58661 CATGCGTGGGACACGCCCTCATTCC-AGGCAATGTGAGAG s panTro5.chr20 65608084 39 + 66533130 CATGCATGGGACACGCCCTCATTCC-AGGCAATGTGAGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371787 39 + 62195757 CATGCGTGGGACACGCCCTCATTCC-AGGCAATGTGAGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784266 39 - 1017659 CATGCGTGGGACACGCCCTCATTCC-AGGCAATGTGAGAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109273921 39 - 110113093 CGTGCGTGGGACATGCCCTCATTCC-AGGCAATATGAGAG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95643482 9 + 96509753 CGCGCGTGG------------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095368 39 - 16982598 CGCGCGTGGGACACGGCCTCGTTCC-AGGCAGCGGGAGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940578 39 - 3785965 CGCGTGTGGGACACGCCCTCATTCC-AGGCAGTGGCAGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89610935 39 - 90373283 CACGCGTGGGACACGCCCTCATTCC-AGTCAGTGGGAGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488455 39 + 6149316 CACGCGTGGGACACGCCCTCATTCC-AGGCAGCGGGAGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720797 39 - 5823884 CACGCGTGGGACATGCCCTCATTCC-AGGCAAAGGGAGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431044 38 + 159171411 CACTCATGGAACAAGCCCTCGTTCC--GGCAACGGGAGAG i calJac3.chr5 C 0 I 447 s saiBol1.JH378156 15550116 39 + 16356641 CACTCATGGAACAAGCCCTGGTTCC-TGGCAACGGGAGAG i saiBol1.JH378156 C 0 I 5 s cebCap1.NW_016107870v1 396335 39 + 1231380 CACTCGTGGAATAAGCCCTCGTTCC-CGGCAATGGGCGAG i cebCap1.NW_016107870v1 C 0 I 5 s aotNan1.NW_018500483v1 1957100 39 + 11732439 CACTCCTGGAACAAGCCCTCGTTCC-CGGCAACGGGAGAG i aotNan1.NW_018500483v1 C 0 I 5 s otoGar3.GL873542 22172818 40 + 22939663 CATGCTTATAACATGCCTTGTTTATGAGATGACAAAAGAG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e rheMac8.chr10 91994499 70 - 92844088 I a score=425894.000000 s hg38.chr20_KI270871v1_alt 34746 59 + 58661 -----ACGCCTTCACCTTGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAACCAGGAGC s panTro5.chr20 65608123 59 + 66533130 -----ACGCCTTCACCTTGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAACCAGGAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371826 59 + 62195757 -----ACGCCTTCACCTTGACCGTGTTGCTGCCTCTCATTCCAACCGTGCTCAGAACCAGGAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784305 58 - 1017659 -----ACGCCTTCA-CTTGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAACCAGGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109273960 59 - 110113093 -----ACGCCTTCACCTTGACCGTGTTGCTGCCTCTCATTCCAACAGTGCTCAGAACCAGGAGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95643491 52 + 96509753 -----------TCCCCTCGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAATCAGGAG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095407 58 - 16982598 -----ATGCCTTCCCCTCGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAATCAGGAG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940617 58 - 3785965 -----ACGCCTTCACCTCGACCGTGTTGCTGCCCCTCGTTCCAACCGTGCTCAGAATCAGGAG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89610974 58 - 90373283 -----ACGCCTTCACCTCGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAATCAGGAG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488494 58 + 6149316 -----ACGCCTTCACCTCGACCGTGTTGCTGCCTCTCGTTCCAACCGTGCTCAGAATCAGGAG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720836 58 - 5823884 -----ACGCCTTCACCTTGACCGTGTTGCTGCCTCTCGTTCCAGCCGTGCTCAGAATCAGGAG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431529 58 + 159171411 -----TTGCCTTTTCCCTGACAACGGTGCTGCCTCTCATTCCAACCATGCTCAG-ATCAGGAGC i calJac3.chr5 I 447 C 0 s saiBol1.JH378156 15550160 58 + 16356641 -----TTGCCTTTCCCCTGACAGCGGTGCTGCCTCTCGTTCCAACGATGCTCAG-ACCAGGAGC i saiBol1.JH378156 I 5 C 0 s cebCap1.NW_016107870v1 396379 58 + 1231380 -----TCGCCTTTCCCCTGACAACGGTGCTGCCTCTCGTTCCAACCATGCTCAG-ACCAGGAGC i cebCap1.NW_016107870v1 I 5 C 0 s aotNan1.NW_018500483v1 1957144 58 + 11732439 -----TCGCCTTTCCCCCGACAACGGTGCTGCCTCTCGTTCCAAACGTGCTCAG-ACCGGGAGC i aotNan1.NW_018500483v1 I 5 C 0 s otoGar3.GL873542 22172858 50 + 22939663 GAGCTTCATGTCTCCCTTGACCACAAGACTGCCT-------------GACTCAGAACCAGGAG- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e rheMac8.chr10 91994499 70 - 92844088 I a score=9661.000000 s hg38.chr20_KI270871v1_alt 34805 1 + 58661 C s panTro5.chr20 65608182 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371885 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784363 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274019 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91994569 1 - 92844088 C i rheMac8.chr10 I 70 C 0 s macFas5.chr10 95643543 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095465 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940675 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611032 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488552 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720894 1 - 5823884 T i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431587 1 + 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550218 1 + 16356641 C i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 396437 1 + 1231380 C i cebCap1.NW_016107870v1 C 0 I 179 s aotNan1.NW_018500483v1 1957202 1 + 11732439 T i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22172908 1 + 22939663 C i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=470344.000000 s hg38.chr20_KI270871v1_alt 34806 69 + 58661 GGCGGGGACGGAGCCACAGAGCAGCCGCTTCCCCGTGTCC--GCGCCCCTGTACT--GTCTTCACACTCGCCA- s panTro5.chr20 65608183 69 + 66533130 GGTGGGGACGGAGCCACAGAGCAGCCGCTTCCCCGTGTCC--ACGCCCCTGTACT--GTCTTCACACTCGCCA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371886 69 + 62195757 GGTGGGGACGGAGCCACAGAGCAGCCGCTTCCCCGTGTCC--ACGCCCCTGTACT--GTCTTCACACTCGCCA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784364 68 - 1017659 GGCGGGGACGGAGCCACAGAGCAGCCGCTT-CCCGTGTCC--GCGCCCCTGTACT--GTCTTCACACTCGCCA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274020 69 - 110113093 AGCGGGGACGGAGTCACAGAGCAGCCGCTTCCCCGTGTCC--ACGCCCCTGTGCT--GTCTTCACACTCGCCA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91994570 67 - 92844088 GGCGGGGACAGAGCCACA-AGCAGCCGCTT-CCCGTGTCCCGTGG-CCCTGTGCT--GTC-TCACACTCGCCA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95643544 68 + 96509753 GGCGGGGACAGAGCCACAGAGCAGCCGCTTCCCCGTGTCC--GCG-CCCTGTGCT--GTCTTCACACTCGCCA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095466 68 - 16982598 GGCGGGGACAGCGCCACAGAGCAGCCGCTTCCCCGTGTCC--GCG-CCCTGTGCT--GTCTTCACACTCGCCA- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940676 68 - 3785965 GGCGGGGACAGAGCCACAGAGCAGCCGCTTCCCCGTGTCC--GCG-CCCTGTGCT--GTCTTCACACTCGCCA- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611033 68 - 90373283 GGCGGGGACAGAGCCACAGAGCAGCTGCTTCCCCGTGTCC--GCG-CACTGTGCT--GTCTTCACACTCGCCA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488553 68 + 6149316 GGCGGGGACAGAGCCACAGAGCAGCTGCTTCCCCATGTCC--GCG-CCCTGTGCT--GTCTTCACACTCGCCA- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720895 68 - 5823884 GGCGGGGACAGAGCCACAGAGCAGCCGCTTCCCCGGGTCC--GCG-CCCTGTGCT--GTCTTCACACTCGCCA- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431588 49 + 159171411 GGCAGGGACCGGCC-ACAGAGCGGCCACCGCCCGTTG-----------------------TCCACACTCACCA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550219 67 + 16356641 GGCAGGGACCGAGC--CAGAGCGGCCACCGCCCCGTGTCC--CCGCCCCGGCGCT--GTCTCCGCACTCACCA- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1957203 69 + 11732439 GGCAGGGACCGAGCCACAGAGCAGCCACCACCCCATGTCC--ACGCCCCTGTGCT--GTCTCCACACTCACCA- i aotNan1.NW_018500483v1 C 0 I 131 s otoGar3.GL873542 22172909 70 + 22939663 AGAGGGGACAGAGCCACTGGCCAAAGA--GCCTCCTATTC--TCGATCCCACGCTGCGTCTTCAGAATCAGTCG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 396438 179 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=605491.000000 s hg38.chr20_KI270871v1_alt 34875 108 + 58661 TCACCTTGCACACCCTGCGGCACCACACGACCGCCACGGAGCCTGTGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCAGGTGGGTGTCAA s panTro5.chr20 65608252 108 + 66533130 TCACCTTGCACACCCGGCGGCACCACACGACCGCCACGGAGCCTGTGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCGGGTGGGTGTCAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61371955 108 + 62195757 TCACCTTGCACACCCGGCGGCACCACACGACCGCCACGGAGCCTGTGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCGGGTGGGTGTCAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784432 108 - 1017659 TCACCTTGCACACCCGGCGGCACCACACGACCGCCACGGAGCCTGTGA---------------------GACCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCGGGTGGGTGTCAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274089 108 - 110113093 TCACCTTGCACACCCGGCAGCACCGCATGGCCGCCACACAGCCTGTGG---------------------GGCCCT---CCTGTGTCTCAAACGCGAGCCCTT-------CCCCGGCGCCCACATCCAGGTGGGTGTCAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91994637 94 - 92844088 TCACCTTGCACACC--GCGGCACCGCACGGCTGCCACGGAGCCGGCGG---------------------GG--CT---CCTGTGTCTCAAACCCGAG-CCTT-------CCCCGGCGCCCACATCCAGGT--------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95643612 99 + 96509753 TCACCTTGCCCACCCGGCGGCACCGCCCGGCTGCCACGGAGCCGGCGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCAGGT--------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095534 99 - 16982598 TCACCTTGCACACCCGGCGGCACCGCACGGCTGCCACGGAGCCGGCGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCAGGT--------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940744 99 - 3785965 TCACCTTGCACACCCGGCAGCACCACACGGCTGCCACGGAGCCTGCAG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCAGGT--------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611101 99 - 90373283 TTACCTTGCACACCCGGCAGCACCGCACGGCCGCCACGGAGCCTGTGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCGGCGCCCACATCCAGGT--------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488621 99 + 6149316 TCACCTTGCACACCCGGCAGCACCACACGGCTGCCACGGAGCCTGCGG---------------------GGCCCT---CCTGTGTCTCAAACCCGAGCCCTT-------CCCCAGTGCCCACATCCAGGT--------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4720963 99 - 5823884 TCACCTTGCACACCTGGCGGCACCGCACGGCCGCCACGGAGCCTGTGG---------------------GGCCCT---CCTGTGTCTCAAACCTGAGCCCTT-------CCCTGGCGCCCACACCCAGGT--------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431637 117 + 159171411 TCGCCTCCCACACCCAGCGGCAC-----GGCCACCACAGAGCCCGAGGGCCCTGCTGTGTCTCCAGCCTGGCCCCGCCCCACAGACTCAAACCCGAGCCCTT-------CCTCCAT-CCCACGTCCAGGG--------- i calJac3.chr5 C 0 I 11 s saiBol1.JH378156 15550286 76 + 16356641 TCACCCCCCGCCCCCGGCGGCAC----------------------------------------------GGCCCTGCCCCGCAGACTCAAACCCGAACCCTT-------CCTCCAT-CCCACGTCCAGGG--------- i saiBol1.JH378156 C 0 I 9 s otoGar3.GL873542 22172979 113 + 22939663 TCAGTTCACATAGCCGGCAACATAGC-------CTACGTGTCCTGACGTGCA-----------------GACCCTGG-CCTG-GGCTCAAACTCAAGCCCCTTGCCTTGTCCTGGGCCCAAGGCCCAGGTGGTTGTTTA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957272 131 + 11732439 I e cebCap1.NW_016107870v1 396438 179 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=1185174.000000 s hg38.chr20_KI270871v1_alt 34983 134 + 58661 GGGAGGGAGA-TTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCCAAAGCAGTGCTGCAGTCCAGCCT-GGGTTCCG-GGCAGTGTCCCCGCTCCCCTCTCCCCACTCCCACAGAGGAAATATTCCCTGGATGCCC s panTro5.chr20 65608360 134 + 66533130 GGGAGGGAGA-TTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAACCT-GGGTTCCG-GGCACTGTCCCCACTCCCCTCTCCCCACTCCCACAGAGGAAATATTCCCTGGATGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372063 134 + 62195757 GGGAGGGAGA-TTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCCG-GGCACTGTCCCCACTCCCCTCTCCCCACTCCCACAGAGGAAATATTCCCTGGATGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784540 133 - 1017659 GGGAGGGAGA-TTCCCCACACTCAGGATATCCT-TCCCTCTGTCCCCGAAGCAGTGCCGCAGTCCAGCCT-GGGTTCCG-GGCACTGTCCCCACTCCCCTCTCCCCACTCCCACAGAGGAAATATT-CCTGGACGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274197 135 - 110113093 GGGAGGGAGATTTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCGGAAGCAGTGCCACAGTCCAGCCT-CGGTTCCG-GGCACTGTCCCCACTCCCCTCTCCCCACTCCCACAGAGGAAATATTCCCTGGACGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91994731 128 - 92844088 ----AGGAGA-GT-CCCACACTCAGGATCTCCT-GCCCTCTGTCCCCG-AGCAGTGCTGCAGTCCAGCCTGGGGTTCTGGGGCACTGTCCGGGCT-CCCTCTCCCCA-TCTCACAGAGGAAATAGTCCTTGGATGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95643711 131 + 96509753 ----AGGAGA-GTCCCCACACCCAGGATCTCCT-GCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCTGGGGCACTGTCCCGGCTCCCCTCTCCCCATTCCCACAGAGGAAATAGTCCTTGGATGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095633 131 - 16982598 ----AGCAGA-GTCCCCACACTCAGGATCTCCT-GCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCTGGGGCACTGTCCCGGCTCCCCTCTCCCCATTCCCACAGAGGAAATAGTCCTTGGATGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940843 131 - 3785965 ----GGGAGA-GTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCTGGGGCACTGTCCCGGCTCCCCTCTCCCCATTCCCACCGAGGAAATAGTCCTTGGATGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611200 131 - 90373283 ----GGGAGA-GTCCCCACACTCAGGATCTCCT-GCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCTGGGGCACTGTCCCGGCTCCCCTCTCCCCATTCCCACCGAGGCAATAGTCCTTGGATGCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488720 131 + 6149316 ----GGGAGA-GTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCTGAGGCACTGTCCTGGCTCCCCTCTCCCCATTCCCACAGAGGAAATAGTCCTTGGATACCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721062 130 - 5823884 ----GGGAGA-GTCCCCACACTCAGGATCTCCT-TCCCTCTGTCCCCGAAGCAGTGCTGCAGTCCAGCCT-GGGTTCCGGGGCACCGTCCCGGCT-CCCCCTCCCCATTCCCACAGAGGAAATATTCCTTGGATGCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431765 135 + 159171411 TGGGGGGAGG-TTCCCCACACACAGAATCCCCT-TCCTCCCATCCCCGAAGCAGCTCCACAGCCCTGACT-GGGTGCCAGGGCACTGCCCCCGCCCCCCTCTCCCCACTCCCACAAAGGAAATACTTCCTGGATGCCC i calJac3.chr5 I 11 C 0 s saiBol1.JH378156 15550371 135 + 16356641 GGGAGGGAGG-TTCCCCACACACAGAATCCCTT-CCCTCCCATCCCCGAAGCAGCGCCACAGCCCTGCCT-GGGTTCCAGGGCACTGCCCCCGCTCCCCTCTCCGCGCTCCCACGGAGGAAATACCCCCTGGATGCCC i saiBol1.JH378156 I 9 C 0 s cebCap1.NW_016107870v1 396617 134 + 1231380 GGGAGGGAGA-TTCCCCACACACAGAATCCCTT-CCCTCCCATTCCCGAAGCTGCGCCACAGCCCTGCCT-GGGTTCCAGGGCACTG-CCCCACTCCCCTCTCCCCACTCCCACAGAGGAAATACTCCCTGGATGCCC i cebCap1.NW_016107870v1 I 179 I 68 s aotNan1.NW_018500483v1 1957403 135 + 11732439 GGGAGGGAGG-TTCCCCACACATGGAATCCCTT-TCCTCCCATCCCCGAAGCAGTGCCACAGCCCTGCCT-GGGTTCCAGGGCACTGCCCCCGCTCCCCTCTCGCCCCTCCCACAGAGGAAATACCCCCTGGATGCCC i aotNan1.NW_018500483v1 I 131 C 0 s otoGar3.GL873542 22173092 129 + 22939663 GAGAGGGACA-GCCCTC-CACGCAGATTCTTCTGGCTCTCCATTTCCAAACCACCACT-CAGTCCAG-CT-GTCCCCTG----CCTGGGCCTCCTACTCTCTCTTGGCTCTCACAGGGGACATAGTCCCTGGATACCC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=65704.000000 s hg38.chr20_KI270871v1_alt 35117 11 + 58661 CGACCTGCA--GG s panTro5.chr20 65608494 11 + 66533130 CGACCTGCA--GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372197 11 + 62195757 CGACCTGCA--GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784673 11 - 1017659 CGACCTGCA--GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274332 11 - 110113093 TGACCCACA--GA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91994859 11 - 92844088 GGACCTGCA--GG i rheMac8.chr10 C 0 I 244 s macFas5.chr10 95643842 11 + 96509753 GGACCTGCA--GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095764 11 - 16982598 GGACCTGCA--GG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940974 11 - 3785965 GGACCTGCA--GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611331 11 - 90373283 GGACCTGCA--GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488851 11 + 6149316 GGACCTGCA--GG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721192 11 - 5823884 CGACCTGCA--GG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57431900 9 + 159171411 TGGCCTGCA---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550506 9 + 16356641 TGGCCTGCA---- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1957538 11 + 11732439 TGGCCTGCAGG-- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173221 11 + 22939663 CAACCTGCA--GA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=8880.000000 s hg38.chr20_KI270871v1_alt 35128 2 + 58661 -GC s panTro5.chr20 65608505 2 + 66533130 -GC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372208 2 + 62195757 -GC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784684 2 - 1017659 -GC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274343 2 - 110113093 -GC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95643853 2 + 96509753 -GC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095775 2 - 16982598 -GC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940985 2 - 3785965 -GC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611342 2 - 90373283 -GC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488862 2 + 6149316 -GC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721203 2 - 5823884 -GC i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1957549 2 + 11732439 -GC i aotNan1.NW_018500483v1 C 0 I 50 s otoGar3.GL873542 22173232 2 + 22939663 TG- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e rheMac8.chr10 91994870 244 - 92844088 I a score=16485.000000 s hg38.chr20_KI270871v1_alt 35130 5 + 58661 CGAGA s panTro5.chr20 65608507 5 + 66533130 CGAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372210 5 + 62195757 CGAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784686 5 - 1017659 CGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274345 5 - 110113093 TGAGA i nomLeu3.chr13 C 0 I 2 s macFas5.chr10 95643855 5 + 96509753 TGAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16095777 5 - 16982598 TGAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2940987 5 - 3785965 TGAGA i cerAty1.NW_012001373v1 C 0 I 254 s chlSab2.chr2 89611344 5 - 90373283 CGAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5488864 5 + 6149316 TGAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721205 5 - 5823884 CGAGA i colAng1.NW_012114444v1 C 0 I 314 s otoGar3.GL873542 22173234 3 + 22939663 CAA-- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e rheMac8.chr10 91994870 244 - 92844088 I a score=3321.000000 s hg38.chr20_KI270871v1_alt 35135 1 + 58661 C s panTro5.chr20 65608512 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372215 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784691 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274352 1 - 110113093 C i nomLeu3.chr13 I 2 C 0 s macFas5.chr10 95643860 1 + 96509753 C i macFas5.chr10 C 0 I 2 s macNem1.NW_012014244v1 16095782 1 - 16982598 C i macNem1.NW_012014244v1 C 0 I 235 s chlSab2.chr2 89611349 1 - 90373283 C i chlSab2.chr2 C 0 I 261 s manLeu1.NW_012104365v1 5488869 1 + 6149316 T i manLeu1.NW_012104365v1 C 0 I 67 s colAng1.NW_012114444v1 4721524 1 - 5823884 C i colAng1.NW_012114444v1 I 314 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173237 0 + 22939663 C e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e cerAty1.NW_012001373v1 2940992 254 - 3785965 I e rheMac8.chr10 91994870 244 - 92844088 I a score=13116.000000 s hg38.chr20_KI270871v1_alt 35136 5 + 58661 TGGGC s panTro5.chr20 65608513 5 + 66533130 TGGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372216 5 + 62195757 TGGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784692 5 - 1017659 TGGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274353 5 - 110113093 TGGGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95643863 5 + 96509753 TGGGC i macFas5.chr10 I 2 I 229 s manLeu1.NW_012104365v1 5488937 5 + 6149316 TGGGC i manLeu1.NW_012104365v1 I 67 C 0 s colAng1.NW_012114444v1 4721525 5 - 5823884 TGGGC i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22173237 5 + 22939663 TTGCT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e chlSab2.chr2 89611350 261 - 90373283 I e cerAty1.NW_012001373v1 2940992 254 - 3785965 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e rheMac8.chr10 91994870 244 - 92844088 I a score=19985.000000 s hg38.chr20_KI270871v1_alt 35141 9 + 58661 ACAGGCACG s panTro5.chr20 65608518 9 + 66533130 ACAGGCACG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372221 9 + 62195757 ACAGGCACG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784697 9 - 1017659 ACAGGCACG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274358 9 - 110113093 ACAGGCACG i nomLeu3.chr13 C 0 C 0 s manLeu1.NW_012104365v1 5488942 9 + 6149316 ACAGGCACG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721530 9 - 5823884 ACAGGCACG i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22173242 9 + 22939663 GTGAGCACA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e chlSab2.chr2 89611350 261 - 90373283 I e cerAty1.NW_012001373v1 2940992 254 - 3785965 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=25900.000000 s hg38.chr20_KI270871v1_alt 35150 10 + 58661 GGCA-TCCTGG s panTro5.chr20 65608527 10 + 66533130 GGCA-TCCTGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372230 10 + 62195757 GGCA-TCCTGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784706 10 - 1017659 GGCA-TCCTGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274367 10 - 110113093 GGCA-TCCTGG i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941246 10 - 3785965 GGCA-TCCTGG i cerAty1.NW_012001373v1 I 254 C 0 s manLeu1.NW_012104365v1 5488951 10 + 6149316 GGCA-TCCTGG i manLeu1.NW_012104365v1 C 0 I 146 s colAng1.NW_012114444v1 4721539 10 - 5823884 GGCA-TCCTGG i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22173251 10 + 22939663 -CCACTCCTCA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e chlSab2.chr2 89611350 261 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=67019.000000 s hg38.chr20_KI270871v1_alt 35160 39 + 58661 GGGAAGTCCCTCCAGCCCGGATACG--CCCACCCCTGACCT s panTro5.chr20 65608537 39 + 66533130 GGGAAGTCCCTCCAGCCCGGATATG--CCCACCCCTGACCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372240 39 + 62195757 GGGAAGTCCCTCCAGCCCGGCTATG--CCCACCCCTGACCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784716 38 - 1017659 GGGAAGTCCCTCCAGCCCGGATACG--CCCA-CCCGGACCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274377 36 - 110113093 GGGA--TCCCTCCAGCCCGGACACG--CCTC-CCTTGACCT i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941256 35 - 3785965 --GGGGTCCCTCCAGCCTGGACATG--CCC--CCCTGACCT i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5489107 37 + 6149316 GGGAGGTCCCTCCAGCCTGGACATG--CCC--CCCTGACCT i manLeu1.NW_012104365v1 I 146 C 0 s colAng1.NW_012114444v1 4721549 36 - 5823884 ---GGATCCCTCCAGCCTGGACACGCCCCC--CCCCAACGT i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22173261 34 + 22939663 -GGGACCTCTTCTGGCCCAGACACA--C----CCCTGTCTT i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e chlSab2.chr2 89611350 261 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=4230.000000 s hg38.chr20_KI270871v1_alt 35199 2 + 58661 GC s panTro5.chr20 65608576 2 + 66533130 GC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372279 2 + 62195757 GC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784754 2 - 1017659 GC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274413 2 - 110113093 GC i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941291 2 - 3785965 GC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611611 2 - 90373283 GC i chlSab2.chr2 I 261 C 0 s manLeu1.NW_012104365v1 5489144 2 + 6149316 GC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721585 2 - 5823884 GC i colAng1.NW_012114444v1 C 0 I 185 s otoGar3.GL873542 22173295 1 + 22939663 G- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e saiBol1.JH378156 15550515 0 + 16356641 C e calJac3.chr5 57431909 0 + 159171411 C e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=144255.000000 s hg38.chr20_KI270871v1_alt 35201 39 + 58661 TGGGCCGGGGCACTGGCCACAGGCATGGGCATCCTG---GGG s panTro5.chr20 65608578 39 + 66533130 TGGGCCGGGGCACTGGCCACAGGCATGGGCATCCTG---GGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372281 39 + 62195757 TGGGCCGGGGCACTGGCCACAGGCATGGGCATCCTG---GGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784756 39 - 1017659 TGGGCCGGGGCGCTGGCCACAGGCATGGGCATCCTG---GGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274415 42 - 110113093 TGGGCCGGGGCACTGGCCACAGGCATGGGCATCCTGGGTGGG i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941293 39 - 3785965 TGGGCCGAGACGCTGGGCACAGGCACAGGCATCCTG---GGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611613 39 - 90373283 TGGGCCGAGACACTGGACACAGGCACAGGCATCCTG---GGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489146 39 + 6149316 TGGGCCGAGACGCTGGGCACAGGCACAGGCATCCTG---GGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721772 39 - 5823884 TGGGCCAGGGCACTGGGCACAGGCACGGGCATCCTG---GGG i colAng1.NW_012114444v1 I 185 I 181 s calJac3.chr5 57431909 38 + 159171411 -GGGCCGGGGGGCTGGCCACCAGCATGGGCATCCCA---GGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550515 38 + 16356641 -GGGCCGGGGGGCTGGCCACTGGCACGGGCATGCCG---GGG i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22173296 19 + 22939663 -GAGCTGCCCCTACTGCCAC---------------------- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=4255.000000 s hg38.chr20_KI270871v1_alt 35240 6 + 58661 GGGAG--T s panTro5.chr20 65608617 6 + 66533130 GGGAG--T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372320 6 + 62195757 GGGAG--T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784795 6 - 1017659 GGGAG--T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274457 6 - 110113093 GGGGG--T i nomLeu3.chr13 C 0 I 261 s cerAty1.NW_012001373v1 2941332 5 - 3785965 -GGGG--T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611652 7 - 90373283 -GGGGCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489185 5 + 6149316 -AGGG--T i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57431947 2 + 159171411 ----G--C i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15550553 2 + 16356641 ----G--C i saiBol1.JH378156 C 0 I 1 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173315 0 + 22939663 C e colAng1.NW_012114444v1 4721811 181 - 5823884 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=38829.000000 s hg38.chr20_KI270871v1_alt 35246 14 + 58661 CTCTCCAGACTGGT s panTro5.chr20 65608623 14 + 66533130 CTCTCCGGACTAGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372326 14 + 62195757 CTCTCCGGACTGGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784801 14 - 1017659 CTCTCCAGACTGGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274724 14 - 110113093 CTCTCCAGACTGGT i nomLeu3.chr13 I 261 C 0 s cerAty1.NW_012001373v1 2941337 14 - 3785965 CTCTCCAGTCCAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611659 14 - 90373283 CTCTCCAGTCCAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489190 14 + 6149316 CTCTCCAGTCCAGA i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57431950 14 + 159171411 CTCTTCAGCCCAGA i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15550556 14 + 16356641 CTCTTCAGCCCAGA i saiBol1.JH378156 I 1 C 0 s otoGar3.GL873542 22173315 9 + 22939663 ----CCAGGCTAG- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1957551 50 + 11732439 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e colAng1.NW_012114444v1 4721811 181 - 5823884 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=62169.000000 s hg38.chr20_KI270871v1_alt 35260 16 + 58661 CACGCCCCCTCATCAT s panTro5.chr20 65608637 16 + 66533130 CACGCCCCCTCATCAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372340 16 + 62195757 CACGCCCCCTCATCAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784815 16 - 1017659 CACGCCCCGTCATCAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274738 16 - 110113093 CATGCCCCCTCATCAT i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941351 16 - 3785965 CATGCCCCCTTGTCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611673 16 - 90373283 CATGCCCCCTTGTCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489204 16 + 6149316 CATGCCCCCTTGTCAC i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57431964 16 + 159171411 CACACCCCCTCATCGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550570 16 + 16356641 CACACCCCCCCATCGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1957601 16 + 11732439 CACACCCCCTCATCGC i aotNan1.NW_018500483v1 I 50 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 396751 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173324 0 + 22939663 C e colAng1.NW_012114444v1 4721811 181 - 5823884 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=141618.000000 s hg38.chr20_KI270871v1_alt 35276 33 + 58661 TGGAGCTTCGGAGCATCACAGCACCTGTCTAGA s panTro5.chr20 65608653 33 + 66533130 TGGAGCTTCGGAGCATCACAGCACCTGTCTAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372356 33 + 62195757 TGGAGCTTCGGAGCATCACAGCACCTGTCTAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784831 33 - 1017659 TGGAGCTTCGGAGCATCACAGCACCTGTCTAGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274754 33 - 110113093 TGGAGCTTCGGGGCATCACAGCACCTGTCTAGA i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941367 33 - 3785965 TGGAGCTTCAGGGCATCACAGCACCTGTCGAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611689 33 - 90373283 TGGAGCTTCGGAGCATCACAGCACGTGTCGAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489220 33 + 6149316 TGGAGCTTCAGGGCATCACAGCACCTCTCGAGA i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57431980 32 + 159171411 TGGAGTTTCAG-GCACCACAGAGCCTGGCCAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550586 32 + 16356641 TGGAGCTTTGG-GCACCACAGCGCCTGCCCAGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 396819 32 + 1231380 TGGAGCTTCGA-GCACCACAGCTCCCGTCCAGA i cebCap1.NW_016107870v1 I 68 C 0 s aotNan1.NW_018500483v1 1957617 32 + 11732439 TGGAGCTTCGG-GCACCACAGCGCCTGTCCAGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173324 6 + 22939663 -------------------------TGTCCA-- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e colAng1.NW_012114444v1 4721811 181 - 5823884 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=3118988.000000 s hg38.chr20_KI270871v1_alt 35309 485 + 58661 CCCACCCCTCCTGTCTCAGCCTTGCAATTTCCTTTCCAGTCTGGGggtgcagggatgctcatgggatcgagg-ctggccaaccacggccagcgagtggtggccccagaatctctgctggaactaccaggaataagacacccccttcccacaaaggttg-ccaactaggaggaggcaggcctgggg--cactggcaggaggacgggtgggcacaggaaaacctgcctgaagatgaggtc---atgaggaaggcagcacagaaggatgggagaagaggccttaagacacat-aatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggttatgtaagcccattcctt-acaaccctttgcatttgttttctgccccttgcaaataaaaga-CCATGACCTTTCAC-GCTATGAGCAGCT----GACATCGGTGTGTCCCTGCTGCGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACATGCTACTC s panTro5.chr20 65608686 488 + 66533130 CCCACCCCTCCTGTCTCAGCCTTGCAATTTCCTTTCCAGTCTAGGGGTGCAGGGATGCTCATGGGATGGAGG-CTGGCCAACCACggccagcgagtggtggccccagaatctctgctggaactaccaggaataagacacccccttcccacaaaggttg-tcaactaggaggaggcaggcctgggg--cactggcaggaggacgggtgggcacaggaaaacctgcctgaagatgaggtcacaacgaggaaggcagcacagagggatgggagaagaggccttaagacacat-aatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggttatgtaagcccattcctt-acaaccctttggatttgttttctgccccttgcaaataaaaga-CCATGACCTTTCAC-GCTATGAGCAGCT----GACATCGGTGTGTCCCTGCTGCGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACATGCTACTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372389 488 + 62195757 CCCACCCCTCCTGTCTCAGCCTTGCAATTTCCTTTCCAGTCTAGGGGTGCAGGGATGCTCATGGGATGGAGG-CTGGCCAACCACggccagcgagtggtggccccagaatctctgctggaactaccaggaataagacacccccttcccacaaaggttg-tcaactaggaggaggcaggcctgggg--cactggcaggaggacgggtgggcacaggaaaacctgcctgaagatgaggtcacaacgaggaaggcagcacagagggatgggagaagaggccttaagacacat-aatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggttatgtaagcccattcctt-acaaccctttggatttgttttctgccccttgcaaataaaaga-CCATGACCTTTCAC-GCTATGAGCAGCT----GACATCGGTGTGTCCCTGCTGCGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACATGCTACTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 784864 490 - 1017659 CCCACCCCTCCTGTCTCAGCCTTGCAATTTCCTTTCCAGTCTGGGggtgcaggggtgctcatgggatcgagg-ctggccaaccacggccagcgagtagtgg-cccagaacctctgctggaactaccaggaataagaca-ccccttcccatgaaggttg-tcaactaggaggaggcaggcctgggg--cactggcaggaggacgggtgggcacaggaaaacctgcctgaagatgaggtcacaacaaggaaagcagcacagagggatgggagaagaggccttaagacacat-aatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggttatgtaagcccatTCCTT-ACAACCCTTTGGATTTGTTTTCTGCCCCTTGCAAATAAAAGA-CCCTGAGCTTTCAC-GCTATGAGCAGCTGACGGACATGGGTGTGTCCCTGCTCCGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACATGCTACTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109274787 477 - 110113093 TCCACCCCTCCTGTCTCAGCCTTGCAATTTCCTTTCCAGTCTGGGggtgcaggggtgctcatgggatcgagg-ctggccaaccatggtcagcgagtggtggccccagaacctctgctggaactaccaggaataaggcacccccttcccacaaatgttg-tcaactaggaggagacaggcctgggg--cactggcaggaggacaggtgggcacaggaaaaccggcctgaagatgaggtcacaacgaggaaggcagcaccgagggatgggagaagagaccttaagacacat-aatgtgagcacctggatccagctgtgcctgaagccccttggactt---------------CCGTTCCTT-ACAACACTTTGGATTTGTTTTCTGCCCCTTGCAAATAAAAGA-CCCTGACCTTTCGG-GCTATGAGCAGCTGACGGACATGGGTGTGTCCCTGCTCTGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACATGCTACTC i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941400 489 - 3785965 CCCACCCCTCCTGTCTCAGCCTCACAGTTTCCTTTCCAGTCTGGGGGTGTGGGGGTGCTCATGGGATCGAGG-CTGGCCAACCATggccagcaagtggtggccccagaatctctgctggaactaccaggaatgaggcacccccttcccacaaaggttg-tcaacaaggaggaggcaggcctgggg--cactggcaggaggatgggtgggcacaggaaaacctgcctgaagatgaggtcacaataaggaaggcagcactgagggatggg-gaagagacctgaagacacat-aatgtcagcacctggatccagctgtgcctgaagccccttggacttccaggtt-tgtaagcccattactt-acaacactctagacttgttttctgccccttgtaaacaaaaga-CCCTGACCTTTCAG-GCTATGATCAGCTGACAGACATGGGTGTGTCCCTGCTCTGAGCCCA-CACCTGACTCCACCATGCTGTGGTCACA-GCTACTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89611722 488 - 90373283 CCCACCCCTCCTGTCTCAGCCTCACAGTTTCCTTTCCAGTCTGGGGGTGTGGGGGTGCTCATGGGATCAAGG-CTGGCCAACCATggccagcaagtggtggccccggaacctctgctggaactaccaggaataaggcacccccttcccacgaaggttg-tcaacgaggaggaggcaggcctgggg--cactggcaggaggatgggtgggcacaggaaaacctgcctgaagatgagatcacaataaggaaggcagcactgagggatggg-gaagagacctgaagacacac-aatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggtt-tgtaagcccattactc-acagcactctagacttgttttctgccccttgcaaacaaaaga-ccctgacCTTTCAG-GCTATGACCAGCTGACAGACAT-GGTGTGTCCCTGCTCCGAGCCCA-CACCTGACTCCACCATGCTGTGGTCACA-GTTACTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489253 489 + 6149316 CCCACCCCTCCTGTCTCAGCCTCACAGTTTCCTTTCCAGTCTGGGGGTGTGGGGGTGCTCATGGGATCGAGG-CTGGCCAACCATggccagcaagtggtggccccagaatctctgctggaactaccaggaatgaggcacccccttcccacgaaggttg-tcaacaaggaggaggcaggcctgggg--cactggcaggaggatgggtgggcacaggaaaacctgcctgaagatgaggtcacaataaggaaggcagcactgagggatggg-gaagagacctgaagacatat-aatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggtt-tgtaagcccattactt-acaacactctagacttgttttctgccccttgcaaacaaaaga-ccctgacCTTTCAG-GCTATGATCAGCTGACAGACATGGGTGTGTCCCTGCTCTGAGCCCA-CACCTGACTCCACCATGCTGTGGTCACA-GCTACTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4721992 489 - 5823884 CCCACCCCTCCTGTCTCAGCCTCACAATTTCCTTTCCAGTCTGGGGATGCGGGGCTGCTCATCGGACCGAGG-CTGGccaacctcggccagcaagtggtggccccagaacctctgctggaactaccaggaataa-gcacccccttcccacgaaggttg-tcaactaggaggaggcaggcctgggg--cactggcaggaggatgggtgggcacaggaaaacctgcctgaagatgaggtcacaataaggaaggcagcactgagggatgga-gaagagacctgaagacacataaatgtgagcacctggatccagctgtgcctgaagccccttggacttccaggtt-tgtaagcccattactt-ACAACACTCTAGACTTGTTTTCTGCCCTTTGCAAACAAAAGA-CCCTGACCTTTCGG-GCTATGATCAGCTGACAGACATGGGTGTGTCCCTGCTCTGAGCCCA-CACCTGACTCCACCATGCTGTGGCCACA-GCTACTC i colAng1.NW_012114444v1 I 181 C 0 s calJac3.chr5 57432012 493 + 159171411 -CCCTCCCTCCCATCACAGCTTCACCATTCCCTTTCCAGTCTGCGGGCGCGGAGGTGCTCATGGGATTGAGGCCTGGCCAACCACTgccatcgagtggtggccccagaacctctgctggaactaccaggaaaaaggcgcccccttcccaccgaggctg-ccaattaggaggaggcaggcctgggg--cactggtaggaggatgggtgagcacaggaaaacctgccggaaaatgaggtcaccacgaggaagccagcaccaagggaccagggaagaattataaagacatgt-aatgagagcacctggatccagctgtgcctgaagccccttggacttcaatattatgtaagcccattactt-acgaaactttggatttgttctctgccgcttgcaaataaaagatccctgacCTTTCAG-GCTATGAGCAGCTGACGGGCCTGAGTGTGGCCCTGCTCTGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACGTGCTACTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15550618 471 + 16356641 -CCCACCCTCCCATCACAGCTTCG----------------CTGGGGGCACGGAGGTGCTCATGGGATTGAGGCCTGGccaacccctgccagtgagtgctggccccagaacctccgctggaactaccaggcaaacggcacccccttcccaccgaggccg-ccaactaggaggaggcaggcctgggg--cact-------ggacaggtgggcacaggaaaacctgcctgaaaatgaggtcaccacaaagaagccagcaccgagggaccggggaagaatcataaagacatgt-aatgtgagcacctggatccagctgtgcctgaagccccttggactttgacattatataagcccattacttaacgaaactttggatttgttctctgccgcttgcaaatgaaagatccctgacCTTTCAG-GCTATTAGCAGCTGACGGGCATGAGTGTGTCCCTGCTCTGAGCCCA-CACCTGACTCCACCACGCTGTGGCCACGTGCTACTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 396851 493 + 1231380 -CCCACCCTCCCATCACAGCTTCGCCATTCCCTTTCCAGTCTGGGGGCACGGGGGTGCTCATGGGATTGAGGCCTGGCCGACCACTgccatcgagtggtggccccagaacctctgctgcaactaccaggaaaacggcacccccttcccaccgaggccg-ccaactaggaggaagcaggcctgggg--cactggcaggaggacgggtgggcacaggaaaacctgcctgaaaatgaggtcaccacgaggaagccagcactgagggactggggaagaatcataaagacatgt-aatgtgagcacctagatccagcagtgcctgaaaccccttagacttcaacattacataagcccattactt-aggaaactttggatttgttctctgccgcttgcaaataaaagaTCCCAGAGCTTTCAG-GCTATGAGCAGCTGTTGGGCGTGAGTGTGTCCCTGCTCTGAGCCCA-CGCCTGACTCCACCATGCTGTGGCCACGTGCTACTC i cebCap1.NW_016107870v1 C 0 I 10 s aotNan1.NW_018500483v1 1957649 493 + 11732439 -CCCTCCCTCCCATCACAGCTTTGCCGTTCCCTTTCCAGTCTGGGGGCACGGAGGTGCTCATGGGATTGAGGCCTGGCCAACCACTgccagtgagtggtgaccccagaacctctgctggaactaccaggaaaaaggcacccccttcccaccaaggccg-acaactaggaggaggcaggcctgggg--cactggtaggaggacgggtgggcacaggaaaacctgcctgaaaatgaggtcaccacgaggaagccggcaccgagggaccggggaagaatcataaagacacgt-aatgtgagcacctggatccagctgtgcctgaagccccttggacttcgacattaggtaagcccattactt-acgacactttggatttgttctctgccgcttgcaaataaaagatccctgacCTTTAAG-GCTATGAGCAGCTGACAGGCGTGAGTGTGTCCCTGCTCTGAGCCCA-CACCTGACTCCACCATGCTGTGGCCACGTGCTACTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173330 471 + 22939663 -----CCCTCCTATAGCAGTCTCTCC-TTTCCTTCCCAAATAGGAGG--------------TGGAATCAAGGCCTTcccaaccagggccagcaagtggcagccccaggacctctgccaggaccactaggacaggggtacttcttttctgctgaagttgcccacctgggaggatgtaggcctgggggctactggcgggagagccagtgagtacaagaaagcctacccaaagatgaagtcacacacagtaaagcagcacagagagaccggggaagagccctaaagaa--gg-aatttgaccacat-gatccagctctgcctgaagcctcttagactaagacgtcatgtaagctcaccactt-aagatgctttggatttggtttttgccccttgcaaataaatgaCCTGTGACCTTTTGGAGATATGGGCAGGTGAGAGATGTAGGTGTATCCTTGGTCTGAGCTCAGTGACTGACAC-----TGCTGTGGTCATGTCCTATTC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=109401.000000 s hg38.chr20_KI270871v1_alt 35794 36 + 58661 TGACCCACAGCTCCTCCCTGGGCAGACAAGCCACGC s panTro5.chr20 65609174 36 + 66533130 TGACCCACAGCTCCTCCCTGGGCAGACAAGCCACGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372877 36 + 62195757 TGACCCACAGCTCCTCCCTGGGCAGACAAGCCACGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785354 36 - 1017659 TGACCCACAGCTCCTCCCTGGGCAGACAAGCCACGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109275264 36 - 110113093 CGACCCACAGCTCCTCCCTGGGCAGACAAGCCACGC i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2941889 36 - 3785965 CGACCCACGGCTCCTCCCTGGGCAGACAAGCCTCGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612210 36 - 90373283 CAACCCACGGCTCCTCCCTGGGCAGACAAGCCTCGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489742 36 + 6149316 TGACCCACGGCTCCTCCCTGGGCAGACAAGCCTCGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722481 36 - 5823884 TGACCCACGGCTCCTCCCTGGGCAGACAAGCCTCGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432505 10 + 159171411 --------------------------CAACCCATGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551089 10 + 16356641 --------------------------CAACCCAGGT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958142 10 + 11732439 --------------------------CAACCCATGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173801 29 + 22939663 TGACCTTTGACTGCTCCTTGGGC-------CCTCAC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397344 10 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=498034.000000 s hg38.chr20_KI270871v1_alt 35830 80 + 58661 GGCTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAAGTC--CTCGATGTGCGGAGCTATTTAGTGAGCACAGGTCA s panTro5.chr20 65609210 80 + 66533130 GGCTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAAGTC--CTCGGTGTGCGGAGCTATTTAGTGAGCACAGGTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372913 80 + 62195757 GGCTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAAGTC--CTCGGTGTGCGGAGCTATTTAGTGAGCACAGGTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785390 80 - 1017659 GGCTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAATTC--CTCGGTGTGCGGAGCTATTTAGTGAGCACAGGTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109275300 80 - 110113093 GACTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAAGTC--CTCGGTGTGCGGAGCTATTTAGTGAGCAGAGGTCA i nomLeu3.chr13 C 0 M 1563 s cerAty1.NW_012001373v1 2941925 80 - 3785965 GGCTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAAGTC--CTCGGTGTGCGGAGCTATTTAGGGAGCACAGGTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612246 80 - 90373283 GGCTGTGACACGAGCTGCCACGGATCAAAAAGGGAA-----AAACAAGTC--CTCGGTGTGCAGAGCTATTTAGGGAGCACAGGTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5489778 80 + 6149316 GGCTGTGACACAAGCTGCCACGGATCAAAAAGGAAA-----AAACAAGTC--CTCGGTGTGCGGAGCTATTTAGGGAGCACAGGTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722517 80 - 5823884 GGCTGTGACACAAGCTGCCACGGATCAAAAACGGAA-----AAACAAGTC--CTCGGTGTGCGGAGCTATTTAGGGAGCACAGGTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432515 86 + 159171411 GGCCGTGACAGAAGCTG-CATGGATCAAAAGGAAAAAAACCAAACAATTCCTCTCGGTATGAGGCACTATTTAGGGAGCAGAGGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551099 85 + 16356641 GGCTGTGACAGAAGCTGCCACGGATCAAAAGGAAAAAAACAAAACAAGTC--TTTGGTGCGAGGCGCTATTTAGGGAGCAGAGGTCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 397354 85 + 1231380 GGCTGTGACAGAATCTGCCACGGATCAAAAGGGAAAAAACAAAACAAGTC--CTCAGTGTGAGGCGCTATTTAGGGAGCAGAGGTCA i cebCap1.NW_016107870v1 I 10 C 0 s aotNan1.NW_018500483v1 1958152 79 + 11732439 GACTGTGACAGAAGCTGCCGTGGATCAAAAGGGAA------AAACAAGTC--CTCAGTGTCAGGCGCTATTTAAGGAGCAGAGGTCG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173830 66 + 22939663 -------AGAAAGCATGCCTTGGACCAAA------------AGGCAAGTC--CTCAGTGAGTAGAGCTCTCTGGACAGCACAGGTTA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=27462.000000 s hg38.chr20_KI270871v1_alt 35910 4 + 58661 GCGT s panTro5.chr20 65609290 4 + 66533130 GCGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372993 4 + 62195757 GCGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785470 4 - 1017659 GCGT i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2942005 4 - 3785965 GCGT i cerAty1.NW_012001373v1 C 0 I 543 s chlSab2.chr2 89612326 4 - 90373283 GCGT i chlSab2.chr2 C 0 I 42 s manLeu1.NW_012104365v1 5489858 4 + 6149316 GCGT i manLeu1.NW_012104365v1 C 0 I 636 s colAng1.NW_012114444v1 4722597 4 - 5823884 GCGT i colAng1.NW_012114444v1 C 0 I 42 s calJac3.chr5 57432601 4 + 159171411 GCGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551184 4 + 16356641 GCGT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 397439 4 + 1231380 GCGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1958231 4 + 11732439 GCGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173896 4 + 22939663 GCAC i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=123608.000000 s hg38.chr20_KI270871v1_alt 35914 47 + 58661 TGGCCGCAGTGCCTGGAGG---------------------------------------------------------------------------------------------GTCTGGAGGGTTTGGGGAGCAGAGGTCA s panTro5.chr20 65609294 47 + 66533130 TGGCCGCAGTGCCTGGAGG---------------------------------------------------------------------------------------------GTCTGGAGGGTTTGGGGAGCAGAGGTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61372997 47 + 62195757 TGGCCGCAGTGCCTGCAGG---------------------------------------------------------------------------------------------GTCTGGAGGGTTTGGGGAGCAGAGGTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785474 47 - 1017659 TGGCCGCAGTGCCTGGAGG---------------------------------------------------------------------------------------------GTCTGGAGGGTTTGGGGAGCAGAGGTCA i gorGor5.CYUI01015750v1 C 0 I 153 s cerAty1.NW_012001373v1 2942552 47 - 3785965 TGGCCGCAGTGCCTGGAGG---------------------------------------------------------------------------------------------GTTTGGAGGGTTTGGGAAGTGGAGGTCA i cerAty1.NW_012001373v1 I 543 C 0 s chlSab2.chr2 89612372 47 - 90373283 TGGCCACAGTGCCTGGAGG---------------------------------------------------------------------------------------------GTTTGGAGGGTTTGGGGAGCACAGGTCA i chlSab2.chr2 I 42 C 0 s manLeu1.NW_012104365v1 5490498 47 + 6149316 TGGCCACAGTGCCTGGAGG---------------------------------------------------------------------------------------------GTTTGGAGGGTTTGGGGAGCGGAGGTCA i manLeu1.NW_012104365v1 I 636 C 0 s colAng1.NW_012114444v1 4722643 47 - 5823884 TGGCCGTGGTGCCTGGAGG---------------------------------------------------------------------------------------------GTTTGAAGGGTTCGGGAAGCGGAGGTCA i colAng1.NW_012114444v1 I 42 C 0 s calJac3.chr5 57432605 140 + 159171411 CAGCCACGGTGTCTGGAGGGTTTGGAGGATTTGGGGAGCAGAAGTCAGCGTCGGCCATGATGTCTGGAGGGTTTGGAGGATTTGGGTAGCAGAGGTCAGTGTCGGCCACGGTGTCTGGAGGGTTTGGGAAGTAGAGGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551188 47 + 16356641 CAGCAGCGGGGTCTGGAGG---------------------------------------------------------------------------------------------GTCTGGAGGGTTTGGGGAGCAGAGATGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 397443 1 + 1231380 C------------------------------------------------------------------------------------------------------------------------------------------- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1958235 47 + 11732439 CAGCCGCGGTGTCTGGAGG---------------------------------------------------------------------------------------------GTTTGGAGGGTTTGGGGAGCAGAGGTCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173900 2 + 22939663 -------------------------------------------------------------------------------------------------------------------TG----------------------- i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=11000.000000 s hg38.chr20_KI270871v1_alt 35961 2 + 58661 GC s panTro5.chr20 65609341 2 + 66533130 GC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373044 2 + 62195757 GC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785674 2 - 1017659 GC i gorGor5.CYUI01015750v1 I 153 C 0 s cerAty1.NW_012001373v1 2942599 2 - 3785965 GC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612419 2 - 90373283 GC i chlSab2.chr2 C 0 T 6615 s manLeu1.NW_012104365v1 5490545 2 + 6149316 GC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722690 2 - 5823884 GC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432745 2 + 159171411 GC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551235 2 + 16356641 GC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958282 2 + 11732439 GC i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397444 0 + 1231380 C e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173902 0 + 22939663 C e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=388189.000000 s hg38.chr20_KI270871v1_alt 35963 94 + 58661 ATTGGCTGTGGTGCCTGGTGGGAAGAGGACCCCACTCTGCTCACGGCTTCACTGTCTTGTGGGAGAGCCCCTGGGGA-GCACCGC-AGAGAGA---GGA s panTro5.chr20 65609343 94 + 66533130 ATTGGCTGTGGTGCCTGGTGGGAAGAGGACCCCACTCCGCTCATGGCTTCACTGTCTTGTGGGAGAGCCCCTGGGGA-GCACCTC-AGAGAGA---GGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373046 94 + 62195757 ATTGGCTGTGGTGCCTGGTGGGAAGAGGACCCCACTCCGCTCACGGCTTCACTGTCTTGTGGGAGAGCCCCTGGGGA-GCACCTC-AGAGAGA---GGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785676 94 - 1017659 ATTGGCTGTGGTGCCTGGTGGGAAGAGGACCCCACTCCGCTCACGGCTTCACTGTCTTGTGGGAGAGCCCCTGGGGA-GCACCGC-AGAGAGA---GGA i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2942601 94 - 3785965 ATTGGCCGTGGTGCCTGGTGGGAAGAGGACCCCACTCCGCTCACAGCTTCACTGTCCTGTAGGAGAGCCCCAGGGGA-GCACCGC-GGAGAGG---GGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605806 94 - 90373283 ATTGGCCGTGGTGCCTGGTGGGAAGAGGACCCCACTCCGCTCACAGCTTCACTGTCCTGTAGGAGAGCCCCTGGGGA-GCACCGT-GGAGAGG---GGA i chlSab2.chr2 T 6615 C 0 s manLeu1.NW_012104365v1 5490547 94 + 6149316 ATTGGCCGTGGTGCCTGGTGGGAAGAGGACCCCACTCTGCTCACAGCTTCACTGTCCTGTAGGAGAGCCCCGGGGGA-GCACCAC-GGAGAGG---GGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722692 61 - 5823884 ATTGGCTGTGGTGCCTGGTGGGAAGAGCACCCCA---------------------------------CCCCTGGGAA-GCACCGC-AGAGAGG---GCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432747 92 + 159171411 GTTGGCCGAAGTGCCTGGTGGGAAGAGCACCCCAGTCCACTCACGGCTTCGCTGTCTCTCAGGAGAGCCCCTGGAGA-GCACGGCAGGGGAGA------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551237 87 + 16356641 GTTGGCCGAAGTGCCTGGTGGGAAGAGCACCCGACTCCGCTCACGGCTT--CTGTCTCTCAGGAGCACCCCTGGAGA-GCA--GC-GGGGAGA------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 397444 89 + 1231380 ---GGCCGAAGTGCCTGGTGGGAAGAGCACCCCACACCACTCAGGGCGT--CACTCTCTCAGGAGAGCCCCTGGAGA-GCACCGC-AGGGAGAGGA--- i cebCap1.NW_016107870v1 C 0 I 35 s aotNan1.NW_018500483v1 1958284 92 + 11732439 ATTGGCCGAAGTGCCTGCGGGGAGGAGCACCCCACTCGGCTCACGGCTTCACCGTCTCTCAGGAGAGCCCCTGGAGA-GCCCCGCAGGGGAGA------ i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173902 77 + 22939663 ---GGCTGTGGTGCCTGGTGGAAGAATGACCCCCATACACAC---------------TGTAAGAGAGCTCTTTGGGCTGCACCAC-AGCGAGA---GGC i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=79503.000000 s hg38.chr20_KI270871v1_alt 36057 18 + 58661 GGGACTCACCAAAGGCCG s panTro5.chr20 65609437 18 + 66533130 GGGACTCACCAAAGGCCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373140 18 + 62195757 GGGACTCACCAAAGGCCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785770 18 - 1017659 GGGACTCACCAAAGGCCG i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2942695 18 - 3785965 GGGACTCCCCAAAGGCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605900 18 - 90373283 GGGACTCCCCAAAGGCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5490641 18 + 6149316 GGGACTCCCCAAAGGCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722753 18 - 5823884 GGGACTCCCCAAAGGCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432839 17 + 159171411 -GGACTCACCGAAGGCTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551324 17 + 16356641 -GGACTCACCGACGGCTG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958376 17 + 11732439 -GGACTCACCGAAGGCTA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22173979 18 + 22939663 AGGGCCAGCCCAACACTG i otoGar3.GL873542 C 0 I 19 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397533 35 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=91817.000000 s hg38.chr20_KI270871v1_alt 36075 65 + 58661 AGCTCCACAGCCCGGGAGAAGAGGG-AA-----AAGCCCCAGCGTCTGAGCTCCTGGGAGAAGAGGGAAGA s panTro5.chr20 65609455 66 + 66533130 AGCTCCACACCCCGGGAGAAGAGGGAAA-----AAGCCCCAGCGTCTGAGCTCCTGGGAGAGGAGGGAAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373158 66 + 62195757 AGCTCCACACCCCGGGAGAAGAGGGAAA-----AAGCCCCAGCGTCTGAGCTCCTGGGAGAGGAGGGAAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785788 65 - 1017659 AGCTCCACAGCCCGGGAGAAGAGGG-AA-----AAGCCCCAGCGTCTGAGCTCCTGGGAGAAGAGGGAAGA i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2942713 65 - 3785965 AGCTCCACGGCCCAGGAGAAGAGGG-AA-----GAGCCCCAGCGTCTGAGCTCCTGGGAGAAGAGGCAAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605918 70 - 90373283 AGCTCCACGGCCCCGGAGAAGAGGG-AATAGGGAAGCCCCAGCATCTGAGCTCCCGGGGGAAGAGGGAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5490659 65 + 6149316 AGCTCCACAGCCCAGGAGAAGAGGG-AA-----GAGCCCCAGCGTCTGAGCTCCCGGGAGAAGAGGCAAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722771 36 - 5823884 AGCTCCACGGCCCAGGAgaagaggg-aa----------------------------------gagggaaga i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432856 20 + 159171411 AG-GCTGTGG-CTGGGAGAAGA------------------------------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551341 20 + 16356641 AGCGCTTCGG-CCGGGAGACG-------------------------------------------------- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958393 39 + 11732439 AGCGCTGTGG-CCGGGAGAGGAGGG-AA-------GCCCCGGC-----AGCTC------------------ i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397533 35 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173997 19 + 22939663 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=1225211.000000 s hg38.chr20_KI270871v1_alt 36140 253 + 58661 GGGAAGCCCCAGTGTCTGCGGCCTGCAGGGAGACTTCTCAGACTTTTGGCCGCGGAGGCAGAAGGACAGGGCCAGGCCATCCGGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCAGCCCACTGGGTGGTGGCAGCAATTGGAGCACGTAATTGGGCCCACATCTGAcacacagcactcagagcagacccc-gtcccgcaccatcagtgccat-caccagcacccac s panTro5.chr20 65609521 253 + 66533130 GGGAAGCCCCAGTGTCTGAGGCCTACAGGGAGACTTCTCAGACTTTTGGCCACAGAGGCAGAAGGACAGGGCCAGGCCATCCGGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCAGCCCACTGGGTGGTGGCAGCAATTGGAGCACATAATTGGGCCCACATCTGACACACAGCGCTCAGAGCAGGCCCC-GTCCCGCACCATCAGTGCCAT-CACCAGCGCCCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373224 253 + 62195757 GGGAAGCCCCAGTGTCTGAGGCCTACAGGGAGACTTCTCAGACTTTTGGCCACAGAGGCAGAAGGACAGGGCCAGGCCATCCGGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCAGCCCACTGGGTGGTGGCAGCAATTGGAGCACATAATTGGGCCCACATCTGACACACAGCGCTCAGAGCAGGCCCC-GTCCCGCACCATCAGTGCCAT-CACCAGCGCCCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 785853 253 - 1017659 GGGAAGCCCCAGTGTCTGCGGCCTGCAGGGAGACTTCTCAGACTTTTGGCCGCAGAGGCAGAAGGACAGGGCCAGGCCATCTGGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCAGCCCACTGGGTGGTGGCAGCAATTGGAGCACATAATTGGGCCCACATCTGACACACAGCGCTCAGAGCAGACCCC-GTCCCGCACCATCAGTGCCAT-CACCAGCACCCAC i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2942778 253 - 3785965 GGGAAGCCCCAGCGTCTGTGGCCTGCAGGGAGACTGCTCAGACTTTTGGCCGCAGAGGCAGAAGGACAGGACCAGGCCATCCAGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCGGCCCATTAGGTGGTGGCAGCAATTGGAGTACATAATTGGGCCCAAATCTGACACATAGCGCTCACACCAGACCCC-CTCCTGcaccatcagtaccac-caccagcacccac i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89605988 253 - 90373283 GGGAAGCCCCAGCGTCTGTGGCCTACAGGGAGACTTCTCAGACTTTTGGCCGCGGAGGCAGAAGGACAGGACCAGGCCATCCAGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCGGCCCATTAGGTGGTGGCAGCAATTGGAGTACGTAATTGGGCCCAAATCTGACACAGagcactcagaccagacccc-ctcctgcatcatcagtaccac-caccagcacccac i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5490724 241 + 6149316 GGGAAGCCCCAGCTTTT------------GAGACTGCTCAGACTTTTGGCCGCAGAGGCAGAAGGACAGGACCAGGCCATCCAGGCACAAACCCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACCGGCCCATTAGGTGGTGGCAGCAATTGGAGTACATAATTGGGCCCAAATCTGACACATAGCGCACAGACCAGacccc-ctcctgcaccatcagtaccac-caccagcacccac i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4722807 253 - 5823884 gggaagCCCCAGCGTCTGTGGCCGGCAGGGAGACTTCTCAGACTTTTGGCCACAGAGGCAGACGGACGGGGCCAGGCCATCCAGGCACAAA-CCGGGGCCCCCATCACCCCAGGCTCAGGCTCTGAGCCCCCAAACCAGGACTGGCCCATTGGGTGGTGGCAGCAATTAGAGCACATCATTGGGCCCACATCTGACACACAGCGCTCAGAccagaccccactcctgcaccatcagtaccac-caccagcacccac i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57432876 238 + 159171411 GGGAAGCCCCAGCATCT-CAGCCTGCAGGGAGAATTCTCAGAC-TTTGGCCACAGAGGCAGAAGGACAGGACCAGGCCATCCAGGCACAGACCTGGGGTCCCAATCAACCCAGGCTCAGGCTCCAAGCCCGCTAACCGGGATCAGCCCACTGGGCGGTGGCAGCAATTCCAGCAGGTAATTAAGC--------------CCACGCTTAGAGCAGGCCCC-ATCCTGCACCATCGGTACCACACACCAGCACCCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551361 252 + 16356641 GGGAAGCCCCAGCGTCT-CAGCCGGCAGGGAGAGTTCTCAGAC-TTTGGCCACAGAGGCAGAAGGACAGGACCAGGCCATCCGGGCACAAACCTGGGGTCCCAATCACCCCAGGCTCAGGCTCCGAGCCCCCTAACTGGGATCGGCCCACTGGGCGGTAGCAGCAATTCCAGCAGATAATTGAGCCCACATCTGACATGCCACACTCAGAGCGGGCCCC-ATCCTGCACCGTGGGTGCCACGCACCAGCAACCAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 397568 252 + 1231380 GGGAAGCCCCAGCATCT-CAGCCTGCAGGGAGAGTTCTCGGAC-TTTGGCCACAGAGGCAGAAGGACGGGACCAGGCCACCCAGGCACAAACCTGGGGTCCCAATCACCCTAGGCTCAGGCTCCGAGTCCCCTAACTGGGATCGGCTCACTGGGCGGTGGCAGCAATTCCAGCAGATAACTGACCCCACATCTGACATGCCACGCTCAGAGTGGGCCCC-ATCCTGCACCGTCGGTGCCACGCACCAGCACCCAC i cebCap1.NW_016107870v1 I 35 I 138 s aotNan1.NW_018500483v1 1958432 234 + 11732439 -------------------GGCCTGCAGGGAGAGTTCTCAGAC-TTAGGCCACAGAGGCAGAAGGACAGGACCAGGCCATCCAGGCACAAACCTGGGGTCCCAATCACCCCAGGCTCAGGCTCCGAGCCCCCTAACCAGGATCGGCCCACTGGGTGGTGGCAGCAATTCCAGCAGATAATGGAGCCTACATCTGACATGCCACGCTCAGAGCGGGCCCC-ATCCTGCACCATCGGTACTACGCACCAGCACCCAC i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173997 19 + 22939663 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=28450.000000 s hg38.chr20_KI270871v1_alt 36393 6 + 58661 acccag s panTro5.chr20 65609774 6 + 66533130 ACCCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373477 6 + 62195757 ACCCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786106 6 - 1017659 ACCCAG i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2943031 6 - 3785965 acccag i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89606241 6 - 90373283 acccag i chlSab2.chr2 C 0 I 6411 s manLeu1.NW_012104365v1 5490965 6 + 6149316 acccag i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4723060 6 - 5823884 acccag i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433114 6 + 159171411 ACCCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551613 6 + 16356641 ATGCAG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958666 6 + 11732439 ACCCAG i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173997 19 + 22939663 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=1722.000000 s hg38.chr20_KI270871v1_alt 36399 1 + 58661 c s panTro5.chr20 65609780 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373483 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786112 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2943037 1 - 3785965 c i cerAty1.NW_012001373v1 C 0 I 133 s manLeu1.NW_012104365v1 5490971 1 + 6149316 c i manLeu1.NW_012104365v1 C 0 I 133 s colAng1.NW_012114444v1 4723066 1 - 5823884 c i colAng1.NW_012114444v1 C 0 I 338 s calJac3.chr5 57433120 1 + 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551619 1 + 16356641 T i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958672 1 + 11732439 T i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173997 19 + 22939663 I e chlSab2.chr2 89606247 6411 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=19365.000000 s hg38.chr20_KI270871v1_alt 36400 12 + 58661 acACAACCCTGC s panTro5.chr20 65609781 12 + 66533130 ACACAACCCTGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373484 12 + 62195757 ACACAACCCTGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786113 12 - 1017659 ACACAACCCTGC i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57433121 12 + 159171411 GCACAGCTCTGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551620 12 + 16356641 GCCCAGCCCTGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958673 12 + 11732439 GCACAGCCCTGC i aotNan1.NW_018500483v1 C 0 I 182 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173997 19 + 22939663 I e manLeu1.NW_012104365v1 5490972 133 + 6149316 I e colAng1.NW_012114444v1 4723067 338 - 5823884 I e chlSab2.chr2 89606247 6411 - 90373283 I e cerAty1.NW_012001373v1 2943038 133 - 3785965 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=2423.000000 s hg38.chr20_KI270871v1_alt 36412 5 + 58661 GCTGC s panTro5.chr20 65609793 5 + 66533130 GCTGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373496 5 + 62195757 GCTGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786125 5 - 1017659 ATTGT i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57433133 5 + 159171411 ATCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551632 5 + 16356641 ACCAC i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22173997 19 + 22939663 I e manLeu1.NW_012104365v1 5490972 133 + 6149316 I e colAng1.NW_012114444v1 4723067 338 - 5823884 I e chlSab2.chr2 89606247 6411 - 90373283 I e cerAty1.NW_012001373v1 2943038 133 - 3785965 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=20078.000000 s hg38.chr20_KI270871v1_alt 36417 22 + 58661 CTGCGCCCCTGGAACCCGCCCG s panTro5.chr20 65609798 22 + 66533130 CTGCACCCCTGGAACCCGCCCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373501 22 + 62195757 CTGCACCCCTGGAACCCGCCCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786130 22 - 1017659 CTGCGCGCCTGGAACCCGCCCG i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57433138 22 + 159171411 CCTCACCCCTTGGACCCCCTCA i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15551637 20 + 16356641 CCCCGCCC--TGGGACCCTTCA i saiBol1.JH378156 C 0 I 1 s otoGar3.GL873542 22174016 22 + 22939663 CTGCACCCCTGCAACCCCTCAA i otoGar3.GL873542 I 19 I 9 e nomLeu3.chr13 109275380 1563 - 110113093 M e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5490972 133 + 6149316 I e colAng1.NW_012114444v1 4723067 338 - 5823884 I e chlSab2.chr2 89606247 6411 - 90373283 I e cerAty1.NW_012001373v1 2943038 133 - 3785965 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=37994.000000 s hg38.chr20_KI270871v1_alt 36439 136 + 58661 CCACCA-----CACGAGCTCACTGCCTC-TG-CCCCTGCAGGCCCCTCACCCCGCCTCACCCCCTCCCTCACT-----------------------------TACAGGCCCCTCA-----CCCCGCCTCAC--CCCGTCCCTCACTTACAGGCCCCT-------------------------------------CACCTCCACCACCACTCCTCCC s panTro5.chr20 65609820 173 + 66533130 CCACCA-----CAGGAGCTCGCTGCCTC-TG-CCCCTACAGGCCCCTCACCCCGCCTCACCCCCTCCCTCACT-----------------------------TACAGGCCCCTCA-----CCCCGCCTCAC--CCCCTCCCTCACTTACAGGCCCCTCACCCCGCCTCACCCCCTCCCTCACTTACAGGCCCTGCACCTCCACCACCACTCCTCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373523 202 + 62195757 CCACCA-----CAGGAGCTCGCTGCCTC-TG-CCCCTACAGGCCCCTCACCCCGCCTCACCCCCTCCCTCACTTACAGGcccctcaccccgcctcacccccctacaggcccctca-----ccccgcctcac--ccccTCCCTCACTTACAGGCCCCTCACCCCGCCTCACCCCCTCCCTCACTTACAGGCCCTGCACCTCCACCACCACTCCTCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786152 101 - 1017659 CCACCA-----CATGAGCTCGCTGCCTC-TG-CCCCTACAGGCCCCTCACCCCGCCTCACC---------------------------------------------------------------------A--CCCCTCCCTCACTTACAGGCCCCG-------------------------------------TACCTCCACCACCACTCCTCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109276949 109 - 110113093 CCATCA-----CAGGAGCTCGCTGCCTC-TGCCCCCTACAGGCCCCGCACCCC---------------------------------------------------------CCTCA-----CGCCGCCTCACCACCCCTCCCTCACTTACAGGccccg-------------------------------------cacccc--cccccactcctccc i nomLeu3.chr13 M 1563 C 0 s calJac3.chr5 57433161 58 + 159171411 CCATCACGCTCCAGGAGCCTGCTGCCCT----------CAGGCCTTGCACTGC---------------------------------------------------------CCCCA-----CCCTGCCTCA-------------------------------------------------------------------------------------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15551658 67 + 16356641 CCATCGTGCTCCAGGAGCCTGCTGCCCTCTG-CCTCTACAGGCCCTGCACCAC---------------------------------------------------------CCACA-----CCCCGCCTCA-------------------------------------------------------------------------------------- i saiBol1.JH378156 I 1 C 0 s otoGar3.GL873542 22174047 117 + 22939663 CTATCC-----CA------TGCTATCTG-TGCCACCTACTGGGCCCCTGCCCA--CCCACCT----------------------------------------TGCTGACCCTCCAAAGCCCACAGCCTGAG--CCCCTGCC---CATCCGGGCCCCAT------------------------------------CACTTCCTGCTCTGTCCT---- i otoGar3.GL873542 I 9 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5490972 133 + 6149316 I e colAng1.NW_012114444v1 4723067 338 - 5823884 I e chlSab2.chr2 89606247 6411 - 90373283 I e cerAty1.NW_012001373v1 2943038 133 - 3785965 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=-540.000000 s hg38.chr20_KI270871v1_alt 36575 1 + 58661 -C s panTro5.chr20 65609993 1 + 66533130 -C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373725 1 + 62195757 -C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786253 1 - 1017659 -C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277058 1 - 110113093 -c i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2943171 1 - 3785965 -C i cerAty1.NW_012001373v1 I 133 C 0 s manLeu1.NW_012104365v1 5491105 1 + 6149316 -C i manLeu1.NW_012104365v1 I 133 C 0 s calJac3.chr5 57433219 1 + 159171411 -C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551725 1 + 16356641 -C i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22174164 1 + 22939663 G- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e colAng1.NW_012114444v1 4723067 338 - 5823884 I e chlSab2.chr2 89606247 6411 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=85844.000000 s hg38.chr20_KI270871v1_alt 36576 27 + 58661 CACCCCTCCCTCACCCAAAGGGACGAA s panTro5.chr20 65609994 27 + 66533130 CACCCCTCCCTCACCCAAAGGGACGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373726 27 + 62195757 CACCCCTCCCTCACCCAAAGGGACGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786254 27 - 1017659 CACCCCTCCCTCACCCAAAGGGACGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277059 27 - 110113093 cacccctccctcacccAAAGGGACGAA i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2943172 27 - 3785965 CACCCTTCCCTCACCCAAAGGGACGAA i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5491106 27 + 6149316 CACCCTTCCCTCACCCAAAGGGACGAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4723405 27 - 5823884 CACCCTTCCCTCACCCAAAGGGACGAA i colAng1.NW_012114444v1 I 338 C 0 s calJac3.chr5 57433220 26 + 159171411 CACCTCTCCCTAACCCAAACCCCCAG- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551726 26 + 16356641 CACCTCTCCGTAACCCAAGCCCCCAG- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22174165 26 + 22939663 CCACCCTCCCTCACAAAAGGGACCGA- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 397820 138 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e chlSab2.chr2 89606247 6411 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=222092.000000 s hg38.chr20_KI270871v1_alt 36603 45 + 58661 GTGCCCCAAACCCTCTTCCC--ACTGCTCCGGAGGGACCTAGACGAA s panTro5.chr20 65610021 45 + 66533130 GTGCCCCAAACCCCCTTCCC--ACTGCTCCGGAGGGACCTAGACGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373753 45 + 62195757 GTGCCCCAAACCCCCTTCCC--ACTGCTCTGGAGGGACCTAGACGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786281 45 - 1017659 GTGCCCCAAACCCTCTTCCC--ACTGCTCCGGAGGGACCTAGACGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277086 45 - 110113093 GTGCCCCAAACCCTCCTGGC--GCTGCTCCAGAGGGACCTAGACGGA i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2943199 45 - 3785965 TTGCCCCAAACCCTCCTCCC--ACTGCTCCGGAGGGACCTAGACAAA i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5491133 45 + 6149316 TTGCCCCAAACCCTCCTCCC--ACTGCTCCGGAGGGACCTAGACAAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4723432 45 - 5823884 TTGCCCCAAACCCTCCTCCC--ACTGCTCCGGAGGGACCTAGACAAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433246 45 + 159171411 GTGCCCCAAACCCTCCACCT--GCTGCTCCAGAGGGGCCTAGATGAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551752 45 + 16356641 GTACCCCAAACCCTCCTCCT--GCTGCTCCAGAGGGACCTAGATGAA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 397958 45 + 1231380 GTGCCCCAAACCCTCCTCCT--GCTGCTCCAGAGGGACCTAGATGAA i cebCap1.NW_016107870v1 I 138 I 63 s otoGar3.GL873542 22174191 47 + 22939663 TGGGCCCAAACCTTCCTCCTAGACTGCTCCCGGAAGACCTAAATGAA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e chlSab2.chr2 89606247 6411 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=53565.000000 s hg38.chr20_KI270871v1_alt 36648 16 + 58661 ACCCTGGCTGCTCTTC s panTro5.chr20 65610066 16 + 66533130 ACCCTGGCTGCTCTTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373798 16 + 62195757 ACCCTGGCTGCTCTTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786326 16 - 1017659 ACCCTGGCTGCTCTTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277131 16 - 110113093 ACCCTGGCTGCCCTTC i nomLeu3.chr13 C 0 C 0 s cerAty1.NW_012001373v1 2943244 16 - 3785965 ACCCTGACTGCCCTTC i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5491178 16 + 6149316 ACCCTGACTGCCCTTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4723477 16 - 5823884 ACCCTGGCTGCCCTTC i colAng1.NW_012114444v1 C 0 I 367 s calJac3.chr5 57433291 14 + 159171411 --GCCTGCTGCTCTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551797 14 + 16356641 --GCCTGCTACTCTTT i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22174238 16 + 22939663 GCTGCAGCTGCTCCTC i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 398003 63 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e chlSab2.chr2 89606247 6411 - 90373283 I e macNem1.NW_012014244v1 16095783 235 - 16982598 I e macFas5.chr10 95643868 229 + 96509753 I e rheMac8.chr10 91994870 244 - 92844088 I a score=78376.000000 s hg38.chr20_KI270871v1_alt 36664 10 + 58661 -CAGAGGTCAC s panTro5.chr20 65610082 10 + 66533130 -CAGAGGTCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373814 10 + 62195757 -CAGAGGTCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786342 10 - 1017659 -CAGAGGTCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277147 10 - 110113093 -CAGAGGTCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995114 10 - 92844088 -CAGAGGTCAC i rheMac8.chr10 I 244 I 1 s macFas5.chr10 95644097 10 + 96509753 -CAGAGGTCAC i macFas5.chr10 I 229 I 1 s macNem1.NW_012014244v1 16096018 10 - 16982598 -CAGAGGTCAC i macNem1.NW_012014244v1 I 235 I 1 s cerAty1.NW_012001373v1 2943260 10 - 3785965 -CAGATGTCAC i cerAty1.NW_012001373v1 C 0 I 643 s chlSab2.chr2 89612658 10 - 90373283 -CAGAGGTCAC i chlSab2.chr2 I 6411 I 1 s manLeu1.NW_012104365v1 5491194 10 + 6149316 -CACATATCAC i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4723860 10 - 5823884 -CAGAGGTCAC i colAng1.NW_012114444v1 I 367 I 1 s calJac3.chr5 57433305 10 + 159171411 -CAGAGGTCAC i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15551811 10 + 16356641 -CGGAAGTCAC i saiBol1.JH378156 C 0 I 1 s otoGar3.GL873542 22174254 10 + 22939663 CCAGA-GCCAC i otoGar3.GL873542 C 0 I 1 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 398003 63 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=202130.000000 s hg38.chr20_KI270871v1_alt 36674 38 + 58661 GGCCCAGCACACGTGCCGGACGAGGGCGGCCGCAGAGG s panTro5.chr20 65610092 38 + 66533130 GGCCCAGCACACGTGCAGGACGAGGGCGGCCGCAGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373824 38 + 62195757 GGCCCAGCACACGTGCAGGACGAGGGCGGCCGCAGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786352 38 - 1017659 GGCCCAGCACACGTGCCCGACGAGGGCGGCCGCAGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277157 38 - 110113093 GGCCCAGCACACATGCTGGACTAGGGCGGCCGCAGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995125 38 - 92844088 GGCCCAGCACACATGCGGGATAAGCACGGCCGCAGAGG i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95644108 38 + 96509753 GGCCCAGCACACATGCGGGATGAGCACGGCCGCAGAGG i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16096029 38 - 16982598 GGCCCAGCACACATGCGGGATGAGCACGGCCGCAGAGG i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2943913 38 - 3785965 GGCCCAGCACACATGCCGGATGAGCACGGCCGCAGAGG i cerAty1.NW_012001373v1 I 643 C 0 s chlSab2.chr2 89612669 38 - 90373283 GGCCCAGCACACACGCCGGATGAGCGCGGCCACAGAGG i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5491205 38 + 6149316 GGCCCAGCACACACGCCGGACGAGCGCGGCCGCAGAGG i manLeu1.NW_012104365v1 I 1 M 4494 s colAng1.NW_012114444v1 4723871 38 - 5823884 GGCCCAGCACACATGCCGCACCAGTGCGGCCGCAGAGG i colAng1.NW_012114444v1 I 1 C 0 s calJac3.chr5 57433316 19 + 159171411 GGCAAAGCGCCCACGCCAG------------------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15551822 19 + 16356641 GGCACAGCACCCACGCCAG------------------- i saiBol1.JH378156 I 1 C 0 s otoGar3.GL873542 22174265 35 + 22939663 GACTCAGC-CACATATTAGGC--GGATCACCTCAGGGG i otoGar3.GL873542 I 1 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 398003 63 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=22924.000000 s hg38.chr20_KI270871v1_alt 36712 4 + 58661 CCCA s panTro5.chr20 65610130 4 + 66533130 CCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373862 4 + 62195757 CCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786390 4 - 1017659 CCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277195 4 - 110113093 CCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995163 4 - 92844088 CCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644146 4 + 96509753 CCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096067 4 - 16982598 CCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2943951 4 - 3785965 CCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612707 4 - 90373283 CCCA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4723909 4 - 5823884 CCCA i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22174300 4 + 22939663 TTCA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958685 182 + 11732439 I e cebCap1.NW_016107870v1 398003 63 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15551841 0 + 16356641 C e calJac3.chr5 57433335 0 + 159171411 C a score=120389.000000 s hg38.chr20_KI270871v1_alt 36716 19 + 58661 -GCAAGGCCACCACACATGA s panTro5.chr20 65610134 19 + 66533130 -GCAAGGCCACCACACATGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373866 19 + 62195757 -GCAAGGCCACCACACATGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786394 19 - 1017659 -GCAAGGCCACCACACATGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277199 19 - 110113093 -GCAAGGCCACCACATATGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995167 19 - 92844088 -GCAAGACCACCACACATGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644150 19 + 96509753 -GCAAGACCACCACACATGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096071 19 - 16982598 -GCAAGACCACCACACATGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2943955 19 - 3785965 -GCAAGACCACCACACATGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612711 19 - 90373283 -GTAAGACCACCACACATGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4723913 19 - 5823884 -GCAAGACCACCACACATGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433335 19 + 159171411 -GCAAAGTCCCCATGTGGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551841 19 + 16356641 -GCAAGGTCCCCACACCGGG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1958867 19 + 11732439 -GCAAGGGCCCCACGCAGGA i aotNan1.NW_018500483v1 I 182 C 0 s otoGar3.GL873542 22174304 20 + 22939663 ACCTGGCCTGCAGCACACCA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398003 63 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=566480.000000 s hg38.chr20_KI270871v1_alt 36735 61 + 58661 GGTCAGGGCTGG-------------ATCTCCCTCCCCAAGTGGCTTTA---------GGCTTCCAGGAATAAGGCAGCACTGA s panTro5.chr20 65610153 61 + 66533130 GGTCAGGGCTGG-------------ATCTCCCTCCCCAAGTGGCTTTA---------GGCTTCCAGGAATAAGGCAGCACTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373885 61 + 62195757 GGTCAGGGCTGG-------------ATCTCCCTCCCCAAGTGGCTTTA---------GGCTTCCAGGAATAAGGCAGCACTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786413 61 - 1017659 GGTCAGGGCTGG-------------ATCTCCCTCCCCAAGTGGCTATA---------GGCTTCCAGGAATAAGGCAGCACTGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277218 61 - 110113093 GGTCAGGGCTGG-------------ATCTCCCTCCCCAAGTGGTTTTA---------GGCTTCCAGGAATAAGGCAGCACTGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995186 61 - 92844088 GGTCAGGGCTGG-------------ATCTCCCTCGCCAGGTGGCTTCA---------GGCTTCCAGGAATAAGGCAGCACTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644169 61 + 96509753 GGTCAGGGCTGG-------------ATCTCCCTCGCCAGGTGGCTTCA---------GGCTTCCAGGAATAAGGCAGCACTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096090 61 - 16982598 GGTCAGGGCTGG-------------ATCTCCCTCGCCAGGTGGCTTCA---------GGCTTCCAGGAATAAGGCAGCACTGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2943974 61 - 3785965 GGTCAGGGCTGG-------------ATCTCCCTCGCCAGGTGGCTTCA---------GGCTTCCAGGAATAAGGCAGCACCGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612730 61 - 90373283 GGTCACGGCTGG-------------ATCTCCCTCCCCAGGTGGCTTCA---------GGCTTCCAGGAATAAGGCAGCACTGA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4723932 61 - 5823884 GGTCAGGGCTGG-------------ATCTCCCTCCCCAGGTGGCTTCA---------GGCTTCCAGGAATAAGGCAGCACTGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433354 61 + 159171411 GATCAGGGCTGG-------------ACCTCCCTCCCCAAGTGGCTTAA---------GCCTTCCAGGAATAAGGCAGCGCTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551860 61 + 16356641 GGTCAGGGCTGG-------------ACCTCCCTCCCCAAGTGGCTTCA---------GCCTTCTAGGAATGAGGCAGCACTGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398066 61 + 1231380 GGTCAGGGCCGG-------------ACCTCCCTCCCCAAGTGGCTTCA---------GCCTTCCAGGAATAAGGCAGCGCTGA i cebCap1.NW_016107870v1 I 63 C 0 s aotNan1.NW_018500483v1 1958886 61 + 11732439 GGTCAGGGCTGG-------------ACCTCCCTCCCCAAGTGGCTTCA---------GCCTTCCAGGAATAAGGCTGCTCTGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22174324 83 + 22939663 TGATGAGGCTGGACATCCCCATCCCACCTCCCACTCCTGGTGGCTTCAAGACCCTGGAGATCCCAAGGATAAATCAGGGCTGA i otoGar3.GL873542 C 0 I 318 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=44602.000000 s hg38.chr20_KI270871v1_alt 36796 10 + 58661 TGCCTG-CCC-C s panTro5.chr20 65610214 10 + 66533130 TGCCTG-CCC-C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373946 10 + 62195757 TGCCTG-CCC-C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786474 11 - 1017659 TGCCTGCCCC-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277279 11 - 110113093 TGCCTGCCCC-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995247 10 - 92844088 TGCCGG-GCC-C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644230 10 + 96509753 TGCCGG-CCC-C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096151 10 - 16982598 TGCCGG-CCC-C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944035 10 - 3785965 TGCCGG-CCC-C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612791 10 - 90373283 TGCCTG-CCC-C i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4723993 10 - 5823884 TGCCTG-CCC-C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433415 9 + 159171411 TGCCCA-CCC-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551921 9 + 16356641 TGCCCG-CCC-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398127 9 + 1231380 TGCCCG-CCC-- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1958947 10 + 11732439 TGCCCG-CCCC- i aotNan1.NW_018500483v1 C 0 I 6 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=46488.000000 s hg38.chr20_KI270871v1_alt 36806 11 + 58661 CGCTCCCAGGG s panTro5.chr20 65610224 11 + 66533130 CGCTCCCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61373956 11 + 62195757 CGCTCCCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786485 11 - 1017659 CGCTCCCAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277290 11 - 110113093 CGCTCCCAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995257 11 - 92844088 CGCTCCCGGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644240 11 + 96509753 CGCTCCCGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096161 11 - 16982598 CGCTCCCGGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944045 11 - 3785965 CGCTCCCGGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612801 11 - 90373283 CGCTCCCGGGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724003 11 - 5823884 TGCTCCCGGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433424 7 + 159171411 CACTGCC---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551930 7 + 16356641 CGCTGCC---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398136 7 + 1231380 CTCTGCC---- i cebCap1.NW_016107870v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1958957 6 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=176135.000000 s hg38.chr20_KI270871v1_alt 36817 26 + 58661 CCCTGGGGCTGCCCCAGGTGTGGGAC s panTro5.chr20 65610235 26 + 66533130 CCCTGGAGCTGCCCCAGGTGTGGGAC i panTro5.chr20 C 0 M 3751 s panPan2.chr20 61373967 26 + 62195757 CCCTGGAGCTGCCCCAGGTGTGGGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786496 26 - 1017659 CCCTGAGGCTGCCCCAGGTGTGGGAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277301 25 - 110113093 CCCTGTGGCTGCCCCAGGTGTGGGA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995268 25 - 92844088 -CCCGGGGCTACCAGAGGTGTGGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644251 25 + 96509753 -CCCGGGGCTACCAGAGGTGTGGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096172 25 - 16982598 -CCCGGGGCTACCAGAGGTGTGGGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944056 25 - 3785965 -CCCGGGGCTACCAGAGGTGTGGGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612812 26 - 90373283 CCCCGGGGCTACCAGCGGTGTGGGAG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724014 26 - 5823884 CCCCGGGGCTACCAGAGGTGTGGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433431 26 + 159171411 CCCTGGAGAAGCCCCAGGTGAGGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551937 26 + 16356641 CCCCGGAGCTGCCCCAGGTGTGGGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398143 26 + 1231380 CCCCAGAGCTGCCCCAAGTATGGGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1958963 26 + 11732439 CCCCAGAGCTGCCCCAGGTGTGGGAG i aotNan1.NW_018500483v1 I 6 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=519907.000000 s hg38.chr20_KI270871v1_alt 36843 75 + 58661 GCTGTGGCTG-CCCCATGCAAGGGCCAGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG s panPan2.chr20 61373993 75 + 62195757 GCTGTGGCTG-CCCCAGGCAAGGGCCGGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786522 75 - 1017659 GCTGTGGCTG-CCCCAGGCAAGGGCCGGGACTCCCGGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277326 54 - 110113093 ----------------------GGCCGGGACTCCCTGAGGCAGCACTGTGTGCTGCAGTCACCCCTGGGGGTAGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995293 75 - 92844088 GCCATGGGTG-CCCCAGGCAAGGGTCAGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i rheMac8.chr10 C 0 I 20 s macFas5.chr10 95644276 75 + 96509753 GCCATGGGTG-CCCCAGGCAAGGGTCAGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16096197 75 - 16982598 GCCATGGGTG-CCCCAGGCAAGGGTCAGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i macNem1.NW_012014244v1 C 0 I 20 s cerAty1.NW_012001373v1 2944081 75 - 3785965 GCCATGGGCG-CCCCAGGCAAGGGCCAGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i cerAty1.NW_012001373v1 C 0 I 20 s chlSab2.chr2 89612838 75 - 90373283 GCCATGGGTG-CCCCAGGCAAGGGCCAGGACTCCCTGAGGCAGCACTGGGCGCTGCAGTCACCCCTGGGGGCAGAG i chlSab2.chr2 C 0 I 21 s colAng1.NW_012114444v1 4724040 76 - 5823884 GCCATGGGTGCCCCCAGGCAAGGGCCAGGACTTCCTGAGGCAGCACTGGGTGCTGCACTCACCCCTGGGGGCAGAG i colAng1.NW_012114444v1 C 0 I 22 s calJac3.chr5 57433457 75 + 159171411 TCCATGGATG-CCCCAGGCAAGGACCAGGACTCCCTGAGGCATCACTGGGCACCGCAGTCACCCCTGAGGGCAGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15551963 75 + 16356641 GCCATGGATG-CCCCAGGCAAGGACCAGGACTCCCGGAGGCATCACTGGGCACCGAGGTCAGCCCCAGGGGCGGGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398169 75 + 1231380 GCCATTGATG-CCCGAGGCAAGGACCAAGACTCCCTAAGGCATCACTGGGCACCGCAGTCACGCCTGGGGGCAGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1958989 75 + 11732439 GCCATGGATG-CCCCAGGCAAGGACCAGGACTCCCTGAGGCATCACTGGGCACCGCAGTCACCCCTGGGGGCAGAG i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e panTro5.chr20 65610261 3751 + 66533130 M a score=6152.000000 s hg38.chr20_KI270871v1_alt 36918 2 + 58661 CC s panPan2.chr20 61374068 2 + 62195757 CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786597 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277380 2 - 110113093 CC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95644352 2 + 96509753 CT i macFas5.chr10 I 1 C 0 s calJac3.chr5 57433532 2 + 159171411 CC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552038 2 + 16356641 CC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398244 2 + 1231380 CC i cebCap1.NW_016107870v1 C 0 I 33 s aotNan1.NW_018500483v1 1959064 2 + 11732439 CC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=501.000000 s hg38.chr20_KI270871v1_alt 36920 1 + 58661 C s panPan2.chr20 61374070 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786599 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277382 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57433534 1 + 159171411 T i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552040 1 + 16356641 T i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1959066 1 + 11732439 T i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644354 0 + 96509753 C e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=9894.000000 s hg38.chr20_KI270871v1_alt 36921 7 + 58661 CAGAAGA s panPan2.chr20 61374071 7 + 62195757 CAGAAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786600 7 - 1017659 CAGAAGA i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95644354 7 + 96509753 GAGAAGA i macFas5.chr10 C 0 C 0 s calJac3.chr5 57433535 7 + 159171411 GAGAACA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552041 7 + 16356641 GAGAAGA i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1959067 7 + 11732439 GAGAAGA i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=6004.000000 s hg38.chr20_KI270871v1_alt 36928 7 + 58661 CCTGCTG s panPan2.chr20 61374078 7 + 62195757 CCTGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786607 7 - 1017659 CCTGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95644361 6 + 96509753 -CGGCTG i macFas5.chr10 C 0 C 0 s saiBol1.JH378156 15552048 6 + 16356641 -CGCCTG i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1959074 6 + 11732439 -CTGCTG i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=2561.000000 s hg38.chr20_KI270871v1_alt 36935 4 + 58661 -GGGG s panPan2.chr20 61374085 4 + 62195757 -GAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786614 4 - 1017659 -GGGG i gorGor5.CYUI01015750v1 C 0 C 0 s macFas5.chr10 95644367 4 + 96509753 -GGGA i macFas5.chr10 C 0 I 1 s aotNan1.NW_018500483v1 1959080 5 + 11732439 GGAGG i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=1146.000000 s hg38.chr20_KI270871v1_alt 36939 2 + 58661 GT s panPan2.chr20 61374089 2 + 62195757 GT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 786618 2 - 1017659 GT i gorGor5.CYUI01015750v1 C 0 C 0 s aotNan1.NW_018500483v1 1959085 2 + 11732439 GT i aotNan1.NW_018500483v1 C 0 C 0 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=1773.000000 s hg38.chr20_KI270871v1_alt 36941 6 + 58661 GGGGGA s gorGor5.CYUI01015750v1 786620 6 - 1017659 GGGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s aotNan1.NW_018500483v1 1959087 6 + 11732439 GGGGGA i aotNan1.NW_018500483v1 C 0 I 3 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panPan2.chr20 61374091 0 + 62195757 C e panTro5.chr20 65610261 3751 + 66533130 M a score=5420.000000 s hg38.chr20_KI270871v1_alt 36947 119 + 58661 AGA-CTGCTGGGGGGTGGGGGGAAGACCTGCTGTGGGGAGGGGGAAGACCTGCTGTGGGGT---GGAAGAC-------------------CTGCTGTGGGGTAGGGGAAGACCTGCTGTGGGGTGG-------------------GGGGGAAGACCTGCTG s gorGor5.CYUI01015750v1 786626 157 - 1017659 AGACCTGCTGGGGG--TGGGGGAAGA-CTGCTGTGGGATGGGGGAAGACCTGCTGGGGAGTGGGGGAAGACTGCTGGGGGTGGGGGAAGACTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGGTGGGGGAAGATTGCTGGGGGGTGGGGGAAGA-TTGCTG i gorGor5.CYUI01015750v1 C 0 I 698 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panPan2.chr20 61374091 0 + 62195757 C e panTro5.chr20 65610261 3751 + 66533130 M a score=41927.000000 s hg38.chr20_KI270871v1_alt 37066 750 + 58661 TGGGGTGGGGGAAGACGTGCTGTGGGGTGGGGGAAGACCTGCTGTGGGGTGGGGGGGAAGACCTGCTGTGGGGT----GGAAGACCTGCTGTGGGGTGGGGGAAGACCTGCTGTGGGGTGGGGGGGAAGACCTGCTGTGGGGTGGGGGAAGACTGCTGGGGGG----------------------------------------------------------------TGGGGGAAGACTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGGTGGGGGAAGACCTGCTGTGGGGTGGGGGAAGACCTGCTGTAGGGTGGGGG-AAGACTGCTGGGGGGTGGGGGGAAGACCTGCTGGGGGGTGGGGGAAGACCTGCTGTAGGGTGGGGGAA-GACTGCTGGGGGGTGGGGGGGAAGACCTGCTGTGGGGTGGGGGAAGACCTGCTGTGGGGTGGGGGAAGACCTGCTGTAGGGTGGGGGAAGACCTGCTGGGGGGTGGAGGAAGACCTGCTTGGGGGTGTGGGAAGACCTGCTGGGGGGAG--GGGGAAGACCTGCTGTGGGTGTGGGAAGACCTGCTGTAGGGTGGGGGAAGACTGCTGGGGGGGTGGGGGGAAGACCTGCTGTGGGGTGGGG-------------------------------------------------------------------AGACTGCTGGGGGGTGGGGGGAAGACCTGCTGGGGTGAGGGGGAAGACTGCTGTGGGGTGTGGGAAGACCTGCTGTAGGGTGGGGGAAGACTGCTGGGGGGTGTGGG-AAGACCTGCTGTAGGGTGGGGGAAGACTGCTGGGGGGTGGGGGGAAGACCTGCTGGGGGGTGGGGGGAAGACCTGCTGGGGGG s gorGor5.CYUI01015750v1 787481 856 - 1017659 TGGGGGGGGGGAAGACGTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGGTGGG----AAGAC-TGCTGGGGGGGTGGGGGAAGAT-TGCTG-GGGGTGGGG-AAGACCTGCTGGGGGGTGGGGG--AAGACCTGCTGGGGGGTGGGGGAAGATTGCTGGGGGGTGGGGGAAGATTGCTGGGGGGTGGGGGAAGATTGCTGGGGGTGGGGGAAGACTGCTGGGGGGGGTGGGGGAAGACTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGGTGGGGGAAGAT-TGCTGGGGGGTGGGGGAAGAT-TGCTGGGGGGTGGGGGGAAGATTGCTGGGGGGTGGGGG-AAGAT-TGCTGGGGGGTGGGGGAAGACCTGCTG-GGGGTGGGGGAAAGATTGCTAGGGGGTGGGGG--AAGAC-TGCTGGGGGGTGGGGGAAGAC-TGCTGGGGGGTGGGGGAAGAC-TGCTGGGGGGTGGGGGAAGAC-TGCTGGGGGGTGGGGGA-GACCTGCT-GGGGGTGGGGGAAGAT-TGCTGGGGGGGGTGGGGGAAGACCTGCTG-GGGTGGGGGAAGAT-TGCTGGGGGGTGGGGGAAGATTGCTGGGGGGGGTGGGGGAAGACCTGCTG-GGGGTGGGGAAGATTGCTGGGGGGTGGGGGAAGATTGCTGGGGGGGGTGGGGGAGACCTGCTGGGGGGTGGGGGGAAGATTGCTGGGGGGTGGGGG-AAGACCTGCTGGGG-GGTGGGGAAGACTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGTGGGGGGAAGATTGCTGGGGGGTGGGGGGAAGACCTGCTG-GGGGTGGGGGAAGATTGCTGGGGGGTGGGGG-AAGAT-TGCTGGGGGGTGGGGG-AAGAC-TGCTGGGGGG i gorGor5.CYUI01015750v1 I 698 I 27 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panPan2.chr20 61374091 0 + 62195757 C e panTro5.chr20 65610261 3751 + 66533130 M a score=0.000000 s hg38.chr20_KI270871v1_alt 37816 25 + 58661 TGGTAGAACACCGCCCGAGGTGTGT e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e gorGor5.CYUI01015750v1 788337 27 - 1017659 I e panPan2.chr20 61374091 0 + 62195757 C e panTro5.chr20 65610261 3751 + 66533130 M a score=15713.000000 s hg38.chr20_KI270871v1_alt 37841 244 + 58661 GGGAAGACCTGCTGGGGGGTGGGGTAATACCTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGG-AGGGGGAAGACCTGCTGGGGGGAGGGGGAAGACCTGCTGTGAGGTGTGGGAAGACCTGCTGTAGGGTGGGGGAAGACTGCTGGGGGGTGGGGGGAAGACCTGCTGGGGGGTGGGGGAAGACCTGCTGGGGGGAGGGGGAAGACCTGCTGGGGGGAGGGGGAAGACCTGCTGGTGGGGTGGG s gorGor5.CYUI01015750v1 788364 229 - 1017659 GGGAAGAT-TGCTAGGGGGTGGGG--AGACCTGCTGGGGGGTGGGGGAAGAC-TGCTGGGGGGTGGGGGGAAGACCTGCTGGGGGGTGGGGGAAGAT-TGCTG-GGGGTGGGGGAAGACCTGTTGGGGGGTGGGGGAAGATTGCTGGGGGGTGGGGGGAAGACCTGCTGGGGGGTGGGGGAAGAT-TGCTGGGGGGTGGGGGGAGACCTGCTGGGGGGTGGGGGAAGACGTGCTGG--------- i gorGor5.CYUI01015750v1 I 27 C 0 e nomLeu3.chr13 109277383 0 - 110113093 C e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panPan2.chr20 61374091 0 + 62195757 C e panTro5.chr20 65610261 3751 + 66533130 M a score=4953.000000 s hg38.chr20_KI270871v1_alt 38085 41 + 58661 GGGAAGACCTGCTGGGGGTGGGGGAAGACCTGCTG-GGGGTG s gorGor5.CYUI01015750v1 788593 26 - 1017659 --------------GGGGTGGGG-AAGAC-TGCTGTGGGGTA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277383 40 - 110113093 GAGAAGACCTGCTGGGGGTGGGG-AAGACCTGCTG-GGGGTG i nomLeu3.chr13 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panPan2.chr20 61374091 0 + 62195757 C e panTro5.chr20 65610261 3751 + 66533130 M a score=5238.000000 s hg38.chr20_KI270871v1_alt 38126 9 + 58661 GGGGAAGAC s panPan2.chr20 61374091 9 + 62195757 GGGGAAGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788619 9 - 1017659 GGGGAAGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277423 9 - 110113093 GGGGAAGAC i nomLeu3.chr13 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e calJac3.chr5 57433542 0 + 159171411 C e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=1916.000000 s hg38.chr20_KI270871v1_alt 38135 5 + 58661 CTGCT s panPan2.chr20 61374100 4 + 62195757 CTGC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788628 5 - 1017659 CTGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277432 5 - 110113093 CGGCT i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57433542 5 + 159171411 CTGCT i calJac3.chr5 C 0 I 2 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e saiBol1.JH378156 15552054 1 + 16356641 I e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=2793.000000 s hg38.chr20_KI270871v1_alt 38140 3 + 58661 GGG s panPan2.chr20 61374104 2 + 62195757 -GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788633 3 - 1017659 GGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277437 3 - 110113093 GGG i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57433549 3 + 159171411 GAG i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15552055 3 + 16356641 GAG i saiBol1.JH378156 I 1 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e cerAty1.NW_012001373v1 2944156 20 - 3785965 I e macNem1.NW_012014244v1 16096272 20 - 16982598 I e macFas5.chr10 95644371 1 + 96509753 I e rheMac8.chr10 91995368 20 - 92844088 I e panTro5.chr20 65610261 3751 + 66533130 M a score=3600.000000 s hg38.chr20_KI270871v1_alt 38143 1 + 58661 G s panPan2.chr20 61374106 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788636 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277440 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995388 1 - 92844088 G i rheMac8.chr10 I 20 C 0 s macNem1.NW_012014244v1 16096292 1 - 16982598 G i macNem1.NW_012014244v1 I 20 C 0 s cerAty1.NW_012001373v1 2944176 1 - 3785965 G i cerAty1.NW_012001373v1 I 20 C 0 s calJac3.chr5 57433552 1 + 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552058 1 + 16356641 G i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724116 22 - 5823884 I e chlSab2.chr2 89612913 21 - 90373283 I e macFas5.chr10 95644371 1 + 96509753 I e panTro5.chr20 65610261 3751 + 66533130 M a score=5500.000000 s hg38.chr20_KI270871v1_alt 38144 1 + 58661 G s panPan2.chr20 61374107 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788637 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277441 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995389 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644372 1 + 96509753 G i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16096293 1 - 16982598 G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944177 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612934 1 - 90373283 G i chlSab2.chr2 I 21 C 0 s calJac3.chr5 57433553 1 + 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552059 1 + 16356641 G i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724116 22 - 5823884 I e panTro5.chr20 65610261 3751 + 66533130 M a score=83677.000000 s hg38.chr20_KI270871v1_alt 38145 14 + 58661 TGGGGGAAGCCAGG s panPan2.chr20 61374108 14 + 62195757 TGGGGGAAGCCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788638 14 - 1017659 TGGGGGAAGCCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277442 14 - 110113093 TGGGGGAAGCCAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995390 14 - 92844088 TGGGGGAAGCCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644373 14 + 96509753 TGGGGGAAGCCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096294 14 - 16982598 TGGGGGAAGCCAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944178 14 - 3785965 TGGGGGAAGCCAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612935 14 - 90373283 TGGGGGAAGCCAGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724138 14 - 5823884 TGGGGGAAGCCAGG i colAng1.NW_012114444v1 I 22 C 0 s calJac3.chr5 57433554 14 + 159171411 TGCAGGGAGCCAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552060 14 + 16356641 TGGGGGGAGCCAGG i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959093 3 + 11732439 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e panTro5.chr20 65610261 3751 + 66533130 M a score=81624.000000 s hg38.chr20_KI270871v1_alt 38159 14 + 58661 AGATCCCTAGCGCA s panPan2.chr20 61374122 14 + 62195757 AGATCCCTAGCGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788652 14 - 1017659 AGATCCCTAGCGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277456 14 - 110113093 AGATCCCTAGCCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995404 14 - 92844088 GGATCCCTAGCCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644387 14 + 96509753 GGATCCCTAGCCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096308 14 - 16982598 GGATCCCTAGCCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944192 14 - 3785965 GGATCCCTAGCCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612949 14 - 90373283 AGATCCCTAGCCCA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724152 14 - 5823884 AGATCCCTAACCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433568 14 + 159171411 AAATCCCTAGTTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552074 14 + 16356641 AGGTCGCTAGCCCA i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1959096 14 + 11732439 AGATCGCTAGCCCA i aotNan1.NW_018500483v1 I 3 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398246 33 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e panTro5.chr20 65610261 3751 + 66533130 M a score=287274.000000 s hg38.chr20_KI270871v1_alt 38173 37 + 58661 GAGGTCACACAGGGTCA----------------AGGTGGGGTCAAGGTTGAAC s panPan2.chr20 61374136 37 + 62195757 GAGTTCACACAGGGTCA----------------AGGTGGGGTCAAGGTTGAAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788666 53 - 1017659 GAGGTCACACAGGGTCAAGGTGGGGTCAGGGTCAGGTGGGGTCAAGGTTGAAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277470 53 - 110113093 GAGGTCACACAGGGTCAAGGTGGGTTCAGGGTCAGGTGGGGTCAAGGTTGAAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995418 47 - 92844088 GAGGTCACACAGGGTCATGGTGGGGTC------AGGTGGGGTCAAGGTTGAAC i rheMac8.chr10 C 0 I 308 s macFas5.chr10 95644401 47 + 96509753 GAGGTCACACAGGGTCATGGTGGGGTC------AGGTGGGGTCAAGGTTGAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096322 47 - 16982598 GAGGTCACACAGGGTCATGGTGGGGTC------AGGTGGGGTCAAGGTTGAAC i macNem1.NW_012014244v1 C 0 I 309 s cerAty1.NW_012001373v1 2944206 47 - 3785965 GAGGTCACACAGGGTCATGGTGGGGTC------AGGTGGGGTCAAGGTTGAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89612963 47 - 90373283 GAGGTCACACAGGGTCATGGTGGGGTC------AGGTGGGGTCAAGGTTGAAC i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724166 47 - 5823884 GAGGTCACACAGGGTCATGGTGGGGTC------AGGTGGGGTCAAGGTTGAAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433582 37 + 159171411 GACGTTACACAGGGTCA----------------AGGTGGGGTCAAGTCTGAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552088 37 + 16356641 GAGGTCACACAGGGTCA----------------CGGTGGGGTCAAGGCTGGAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398279 37 + 1231380 GAGGTCACACAGGGTCA----------------AGGTGGGGTCAAGGTTGAAC i cebCap1.NW_016107870v1 I 33 C 0 s aotNan1.NW_018500483v1 1959110 37 + 11732439 GAGGTCACACAGGGTCA----------------AGGTGGGGTCAAGGTTGAAC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e panTro5.chr20 65610261 3751 + 66533130 M a score=81321.000000 s hg38.chr20_KI270871v1_alt 38210 10 + 58661 AAGAGTGGCA s panPan2.chr20 61374173 10 + 62195757 AAGAGTGGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788719 10 - 1017659 AAGAGTGGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277523 10 - 110113093 AAGAGTGGCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995773 10 - 92844088 aagagtggcg i rheMac8.chr10 I 308 C 0 s macFas5.chr10 95644448 10 + 96509753 AAGAgtggca i macFas5.chr10 C 0 I 307 s macNem1.NW_012014244v1 16096678 10 - 16982598 aagaGTGGCG i macNem1.NW_012014244v1 I 309 C 0 s cerAty1.NW_012001373v1 2944253 10 - 3785965 AAGAGTGGCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613010 10 - 90373283 ACGAGTGGCA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724213 10 - 5823884 AAGAGTGGCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433619 10 + 159171411 AAGAGTGGCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552125 10 + 16356641 AAGAGTGGCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398316 10 + 1231380 AAGAGTGGCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1959147 10 + 11732439 AAGAGTGGCA i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e panTro5.chr20 65610261 3751 + 66533130 M a score=38040.000000 s hg38.chr20_KI270871v1_alt 38220 6 + 58661 GGCGCC s panPan2.chr20 61374183 6 + 62195757 GGCGCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788729 6 - 1017659 GGCGCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277533 6 - 110113093 GGCGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995783 6 - 92844088 ggtgcc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644765 6 + 96509753 ggtgcc i macFas5.chr10 I 307 C 0 s macNem1.NW_012014244v1 16096688 6 - 16982598 GGTGCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944263 6 - 3785965 GGTGCC i cerAty1.NW_012001373v1 C 0 I 338 s chlSab2.chr2 89613020 6 - 90373283 GGTGCC i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724223 6 - 5823884 GGTGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433629 6 + 159171411 GGCGTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552135 6 + 16356641 GGCGTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398326 5 + 1231380 -GCATC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1959157 6 + 11732439 GGCATC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e panTro5.chr20 65610261 3751 + 66533130 M a score=373694.000000 s hg38.chr20_KI270871v1_alt 38226 64 + 58661 CAGGTGA-GAGCTGGCAGAGCAGCGTCTGTGGAGCCGAGGCTGCGGGGGCTTGGAAGCAGGGGAG s panPan2.chr20 61374189 64 + 62195757 CAGGTGA-GAGCTGGCAGAGCAGCGTCTGTGGAGCCGAGGCTGCGGGGGCTCGGAAGCAGGGGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788735 65 - 1017659 CAGGTGAGGGGCTGGCAGAGCAGCGTCTGTGGAGCTGAGGCTGCGGGGGCTCGGAAGCAGGGGAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277539 63 - 110113093 CAGGTGA-GAGCTGGCAGAGCAGAGTCTGTGGAGCC-AGGCTGTGGGGGCTCGGAAGCAGGGGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995789 64 - 92844088 caggtga-gagctggcagAGCAGCGTCTGTGGAGCCAGGGCTGTGGGGACTCGGAAGCAGGGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644771 64 + 96509753 caggtga-gagctggcagAGCAGCGTCTGTGGAGCCAGGGCTGTGGGGACTCGGAAGCAGGGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096694 64 - 16982598 CAAGTGA-GAGCTGGCAGAGCAGCGTCTGTGGAGCCAGGGCTGTGGGGACTCGGAAGCAGGGGAG i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89613026 64 - 90373283 CAGGTGA-GAGCTGGCAGAGCAGCGTCTGTGGAGCCAGGGCTGCGGGGACTCGGAAGCAGGGGAG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724229 64 - 5823884 CAGGTGA-GAACTGGCAGAGCAGCGTCTGTGGAGCCAGGGATGCGGGGACTCAGAAGCAGGGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433635 63 + 159171411 AGGGTGA-CACCTGGCAGGGCTGTGTCTGTGGAGCCGGGGCTGCGGAG-CTCAGAAGCAGGGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552141 63 + 16356641 GGGGTGA-CAGCTGGCAGGGCCGTGTCTGTGGAGCCGGGGCTGCGGAG-CTCAGAAGCAAGGGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398331 63 + 1231380 CGGGCGA-CAGCTGGCAGGGCCGCGTCTGTGGAGCCGGGGCTGCGGAG-CTCAGAAGCAGGGGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1959163 63 + 11732439 CGGGTGA-CAGCTGGCAGGGCCGTGTCTGTGGAGCCGGGGCCACGGAG-CTCAGAAGCAGGGGAG i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e cerAty1.NW_012001373v1 2944269 338 - 3785965 I e panTro5.chr20 65610261 3751 + 66533130 M a score=355519.000000 s hg38.chr20_KI270871v1_alt 38290 47 + 58661 GGCAGACCtgtgcagag-agcccttggcataactaactccatcttagg s panTro5.chr20 65614012 47 + 66533130 GGCAGACCtgtgcagag-agcccttggcataactaactccatcttagg i panTro5.chr20 M 3751 C 0 s panPan2.chr20 61374253 47 + 62195757 GGCAGACCtgtgcagag-agcccttggcataactaactccatcttagg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788800 48 - 1017659 GGCAGACCtgtgcagagaagcccttggcataactaactccatcttagg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277602 47 - 110113093 GGCAGACCtgtgcagag-agcccttggcataactaactccatcttaga i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995853 47 - 92844088 GGCAGGCCTGtgcacag-agcccttggcataactaactccatcttaga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644835 47 + 96509753 GGCAGGCCTGtgcacag-agcccttggcataactaactccatcttaga i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096758 47 - 16982598 GGCAGGCCTGtgcacag-agcccttggcataactaactccatcttaga i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89613090 47 - 90373283 GGCAGGCCTGtgcacag-agcccttggcataaccaactccatcttaga i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724293 47 - 5823884 GGCAGGCCtgtgcagag-agcccttggcataactaactccatcttagt i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433698 47 + 159171411 GGCAGACCtgtgcagag-agcccttggcataactaactccaacttaga i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552204 47 + 16356641 GGCAGGCCtgtgcagag-agccctcggcgtgactaactccatcttaga i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398394 45 + 1231380 GGCAGGCCtgtgc--ag-agtccttggcgtaactaactgcatcctagt i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1959226 47 + 11732439 GGCAGGCCtgtgcagag-agcccttggcataactaactccatcttaga i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e cerAty1.NW_012001373v1 2944269 338 - 3785965 I a score=382808.000000 s hg38.chr20_KI270871v1_alt 38337 51 + 58661 aaaagactccattt-tgtctcacagggcactctaccaagaaggataagatg-t s panTro5.chr20 65614059 51 + 66533130 aaaagactccattt-tgtctcacagggcactctaccaagaaggataagatg-t i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374300 51 + 62195757 aaaagactccattt-tgtctcacagggcactctaccaagaaggataagatg-t i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788848 51 - 1017659 aaaagactccattt-tgtttcacagggcactctaccaagaaggataagatg-t i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277649 51 - 110113093 aaaatactccattt-tgtctcacggggcactctaccaagaaagataagatg-t i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995900 52 - 92844088 aaaagactccattt-tgtctcgcagggcactctaccgagaaggaaaagatgtt i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644882 52 + 96509753 aaaagcctccattt-tgtctcgcagggcactctaccgagaaggaaaagatgtt i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096805 52 - 16982598 aaaagactccgttt-tgtctcacagggcactctaccgagaaggaaaagatgtt i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944607 52 - 3785965 aaaagaCTCCATTT-TGTCTCACAGGGCACTCTACCGAGAAGGAAAAGATGTT i cerAty1.NW_012001373v1 I 338 C 0 s chlSab2.chr2 89613137 52 - 90373283 aaaagactccattt-tgtctcacagggcactctaccgagaaggaaaagatgtt i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724340 52 - 5823884 aaaagactccattt-tgtctcacagggcactgtaccgagaaggaaaagatgtt i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433745 52 + 159171411 aaaaggctccatttgtctttcacagagcgctctacgaaggaggaaaagatg-t i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15552251 52 + 16356641 aaaagactccatgtgtttttcacaaagcactctgtgaaggaggaaaagatg-t i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 398439 52 + 1231380 aaaagactccatttgtctttcacagagcactctacgaaggaggaaaagatg-t i cebCap1.NW_016107870v1 C 0 I 1 s aotNan1.NW_018500483v1 1959273 52 + 11732439 aaaagactccatttgtctttcacagagcactctacggaggaggaaaagatg-t i aotNan1.NW_018500483v1 C 0 I 620 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=88045.000000 s hg38.chr20_KI270871v1_alt 38388 12 + 58661 ctgtttaaaaac s panTro5.chr20 65614110 12 + 66533130 ctgtttaaaaac i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374351 12 + 62195757 ctgtttaaaaac i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788899 12 - 1017659 ctgtttaaaaac i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277700 12 - 110113093 ctgtttaagaac i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91995952 12 - 92844088 ctgtttaagaac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644934 12 + 96509753 ctgtttaagaac i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096857 12 - 16982598 ctgtttaagaac i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944659 12 - 3785965 CTGTTTAAGAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613189 12 - 90373283 ctgtttaagaac i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724392 12 - 5823884 ctgtttaaGAAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433798 12 + 159171411 ttgtttaataac i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15552304 12 + 16356641 ttgttgaagaac i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 398492 12 + 1231380 ttgtttaaGAAC i cebCap1.NW_016107870v1 I 1 I 10 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959325 620 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=68721.000000 s hg38.chr20_KI270871v1_alt 38400 18 + 58661 caaaaagc--aaaaaag-aag s panTro5.chr20 65614122 18 + 66533130 caaaaagc--aaaaaag-aag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374363 18 + 62195757 caaaaagc--aaaaaag-aag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788911 18 - 1017659 caaaaaac--aaaaaag-aag i gorGor5.CYUI01015750v1 C 0 I 1 s nomLeu3.chr13 109277712 18 - 110113093 caaaaaac--aaaaaaa-aag i nomLeu3.chr13 C 0 I 3 s rheMac8.chr10 91995964 20 - 92844088 caaaaagca-aaaaaaacaag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644946 19 + 96509753 caaaaagc--aaaaaaacaag i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096869 19 - 16982598 caaaaagc--aaaaaaacaag i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944671 19 - 3785965 CAAAAAGC--AAAAAAACAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613201 19 - 90373283 caaaaagc--aaaaaaacaag i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724404 19 - 5823884 CAAAAAAC--aaaaaaacaag i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57433810 18 + 159171411 -aacaaggacAACAaaa-aa- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552316 16 + 16356641 -aaaaaag--aAAAAGA-AA- i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959325 620 + 11732439 I e cebCap1.NW_016107870v1 398504 10 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=174683.000000 s hg38.chr20_KI270871v1_alt 38418 28 + 58661 aaaacctggccatgcatggcggctcacg s panTro5.chr20 65614140 28 + 66533130 aaaacctggccatgcatggcggctcacg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374381 28 + 62195757 aaaacctggccatgcatggcggctcacg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788930 28 - 1017659 aaaacctggccatgcatggcagctcacg i gorGor5.CYUI01015750v1 I 1 C 0 s nomLeu3.chr13 109277733 28 - 110113093 aaaaactggccgggcatggtggctcacg i nomLeu3.chr13 I 3 C 0 s rheMac8.chr10 91995984 28 - 92844088 aaaaactggccgggcatggcggctcacg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95644965 28 + 96509753 aaaaactggccgggcatggcggctcacg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096888 28 - 16982598 aaaaactggccgggcatggcggctcaca i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944690 28 - 3785965 AAAAGCTggccgggcatggcggctcacg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613220 28 - 90373283 aaaaactggctgggcatgggggctcatg i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4724423 28 - 5823884 aaaaactggtcgggcatggcggctcacg i colAng1.NW_012114444v1 C 0 I 277 s calJac3.chr5 57433828 24 + 159171411 ----actaggcaggtgtgatggcacacg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552332 24 + 16356641 ----ACTggccgggcgcggtggctcacg i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398514 28 + 1231380 AAAATCTggcctggcgtggtggctcacg i cebCap1.NW_016107870v1 I 10 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959325 620 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M a score=6998.000000 s hg38.chr20_KI270871v1_alt 38446 3 + 58661 cat s panTro5.chr20 65614168 3 + 66533130 cat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374409 3 + 62195757 cat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788958 3 - 1017659 cat i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277761 3 - 110113093 cat i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996012 1 - 92844088 --t i rheMac8.chr10 C 0 I 9 s macFas5.chr10 95644993 1 + 96509753 --t i macFas5.chr10 C 0 I 9 s macNem1.NW_012014244v1 16096916 1 - 16982598 --t i macNem1.NW_012014244v1 C 0 I 9 s cerAty1.NW_012001373v1 2944718 1 - 3785965 --t i cerAty1.NW_012001373v1 C 0 I 9 s chlSab2.chr2 89613248 1 - 90373283 --t i chlSab2.chr2 C 0 I 9 s calJac3.chr5 57433852 3 + 159171411 cct i calJac3.chr5 C 0 I 7 s saiBol1.JH378156 15552356 3 + 16356641 cct i saiBol1.JH378156 C 0 I 7 s cebCap1.NW_016107870v1 398542 3 + 1231380 cct i cebCap1.NW_016107870v1 C 0 I 7 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959325 620 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e manLeu1.NW_012104365v1 5491243 4494 + 6149316 M e colAng1.NW_012114444v1 4724451 277 - 5823884 I a score=64097.000000 s hg38.chr20_KI270871v1_alt 38449 13 + 58661 cagcacttcggga s panTro5.chr20 65614171 13 + 66533130 cagcacttcggga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374412 13 + 62195757 cagcacttcggga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788961 13 - 1017659 cagcacttcggga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277764 13 - 110113093 cagcactttggga i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996022 13 - 92844088 cagcactttggga i rheMac8.chr10 I 9 C 0 s macFas5.chr10 95645003 13 + 96509753 cagcactttggga i macFas5.chr10 I 9 C 0 s macNem1.NW_012014244v1 16096926 13 - 16982598 cagcactttggga i macNem1.NW_012014244v1 I 9 C 0 s cerAty1.NW_012001373v1 2944728 10 - 3785965 cagcactttg--- i cerAty1.NW_012001373v1 I 9 C 0 s chlSab2.chr2 89613258 13 - 90373283 cagcactttggga i chlSab2.chr2 I 9 C 0 s manLeu1.NW_012104365v1 5495778 13 + 6149316 cagcactttggga i manLeu1.NW_012104365v1 M 4494 C 0 s calJac3.chr5 57433862 10 + 159171411 cagctgctca--- i calJac3.chr5 I 7 C 0 s saiBol1.JH378156 15552366 10 + 16356641 cagcactctg--- i saiBol1.JH378156 I 7 C 0 s cebCap1.NW_016107870v1 398552 10 + 1231380 cagcacttcg--- i cebCap1.NW_016107870v1 I 7 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1959325 620 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e colAng1.NW_012114444v1 4724451 277 - 5823884 I a score=286805.000000 s hg38.chr20_KI270871v1_alt 38462 36 + 58661 ggaggccgaggcgggcagatcacttgagatcaggag s panTro5.chr20 65614184 36 + 66533130 ggaggccgaggcgggcagatcacttgagatcaggag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374425 36 + 62195757 ggaggccgaggcgggcagatcacttgagatcaggag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 788974 36 - 1017659 ggaggccaaggcgggcagatcacttgaggtcaggag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277777 36 - 110113093 ggaggccgaggcgggcagatcacttgaggtcaggag i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996035 36 - 92844088 ggaggccgaggtgggcagatcacttgaggtcaggag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645016 36 + 96509753 ggaggccgaggtgggcagatcacttgaggtcaggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096939 36 - 16982598 ggaggccgaggtgggcagatcacttgaggtcaggag i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944738 36 - 3785965 ggaggccgaggtgggcagatcacttgaagtcaggag i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613271 36 - 90373283 ggaggccgaggtgggcagatcacttcaggtcaggag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5495791 36 + 6149316 ggaggccgaggtgggcagatcacttgaggtcaggag i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57433872 33 + 159171411 ggaggctaaggca---gaactgcttgaacccagaag i calJac3.chr5 C 0 I 1179 s saiBol1.JH378156 15552376 36 + 16356641 ggaggccgaggcgggtggatcacctgaggtcaggag i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398562 36 + 1231380 ggaggcccaggcaggtggctcacctgaggtcagcag i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1959945 36 + 11732439 ggaggctgaggcaggcaaaccacctaaggtcaggag i aotNan1.NW_018500483v1 I 620 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e colAng1.NW_012114444v1 4724451 277 - 5823884 I a score=177990.000000 s hg38.chr20_KI270871v1_alt 38498 25 + 58661 ttcgaaaccagcctggccaatatgg s panTro5.chr20 65614220 25 + 66533130 ttcgaaaccagcctggccaatatgg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374461 25 + 62195757 ttcgaaaccagcctggccaatatgg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789010 25 - 1017659 ttcgaaaccagcctggccaatatgg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277813 25 - 110113093 ttcaaaaccagcctggccaatatgg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996071 25 - 92844088 ttcaagaccagcctggccaatatgg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645052 25 + 96509753 ttcaagaccagcctggccaatatgg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16096975 25 - 16982598 ttcaagaccagcctggccaatatgg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944774 25 - 3785965 ttcaagaccagcctggccaacatgg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613307 25 - 90373283 ttcaagaccagcctggccaatatgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5495827 25 + 6149316 ttcaagaccagcctggccaatatgg i manLeu1.NW_012104365v1 C 0 C 0 s saiBol1.JH378156 15552412 25 + 16356641 ctcgagaccagcctggccaacacga i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398598 24 + 1231380 tttgagg-taacctggccaacgtgg i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1959981 25 + 11732439 ttcgagaccagcctagccaacacgg i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e calJac3.chr5 57433905 1179 + 159171411 I e colAng1.NW_012114444v1 4724451 277 - 5823884 I a score=1391708.000000 s hg38.chr20_KI270871v1_alt 38523 180 + 58661 tgaaactctgtctctactaaaaatac-aaaaattagccaggcatggtggcgcaggtctgtaatcccagctacttggaaggctgaggcagaagaatcgcttgaacccaggaggcggaggctgcagtgagccgagaccatgccactgcactccagcctaggcaatagagcaagactctgtccc s panTro5.chr20 65614245 180 + 66533130 tgaaactctgtctctactaaaaatac-aaaaattagccaggcatggtggtgcaagtctgtaatcccagctacttggaaggctgagacagaagaatcgcttgaacccaggaggcggaggctgcagtgagccgagaccatgccactgcactccagcctaggcgatagagcaagactctgtccc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374486 180 + 62195757 tgaaactctgtctctactaaaaatac-aaaaattagccaggcatggtggcgcaggtctgtaatcccagctacttggaaggctgagacagaagaatcgcttgaacccaggaggcggaggctgcagtgagccgagaccatgccactgcactccagcctaggcgatagagcaagactctgtccc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789035 181 - 1017659 tgaaactctgtctctactaaaaatacaaaaaattagccaggcatggtggcacaggtctgtaatcccagctacttggaaggctgaggcagaagaatcgcttgaacccaggaggcggaggctgcagtgagccgagaccatgccactgcactccagcctaggtgatagagcaagactctgtccc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109277838 180 - 110113093 tgaaactctgtctctactaaaaatac-aaaaattagccaggcctggtggcgggcgcctgtaatcccagctacttggaaggctgaggcaaaagaatcgcttgaacccaggaggcagaggctgcagtgagccgagaccaagccactgcactccagcctaggcgatagagcaagaccctgtctc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996096 174 - 92844088 tgaaattccatctctactaaaaatac-aaaaattagccaggcgtggtggcgcgtgcctgtaatcccagctactcgg------gaggcagaagaatcgcttgaacccaggaggtagaggctgcagtgagccaagaccacgccactgcactccagcctgggtgatagagcaagactctgtctc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645077 174 + 96509753 tgaaattccatctctactgaaaatac-aaaaattagccaggcgtggtggcgcgtgcctgtaatcccagctactcgg------gaggcagaagaatcgcttgaacccaggaggtagaggctgcagtgagccaagaccacgccactgcactccagcctgggtgatagagcaagactctgtctc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097000 174 - 16982598 tgaaattccatctctactaaaaatac-aaaaattagccaggcatggtggcgcgtgcctgtaatcccagctactcgg------gaggcagaagaatcgcttgaacccaggaggtagaggctgcagtgagccaagaccacgccactgcactccagcctaggtgataaagcaagactctgtctc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944799 174 - 3785965 tgaaattccatctctactaaaaatac-aaaaattagccaggcgtggtggcaggtgcctgtaatcccacctactcgg------gaggcagaagaatcgcttgaacccaggaggtggaggctgcagtgagccaagaccatgccactgcactccagcctgggagatagagcaagactctgtctc i cerAty1.NW_012001373v1 C 0 I 2 s chlSab2.chr2 89613332 174 - 90373283 tgaaattccatctctactaaaaatac-aaaaattagccaggcatggtggcacgtgcctgtaatcccagctactcag------gaggcagaagaatcgcttgaacccaggaggtggaggccacagtgagccaagaccacgccactgcaccccagcctaggtgatagagcaagactctgtctc i chlSab2.chr2 C 0 I 3 s manLeu1.NW_012104365v1 5495852 174 + 6149316 tgaaattccatctctactaaaaatac-aaaaattagccaggcgtggtggcacgtgcctgtaatcccagctactcgg------gaggcagaagaatcgcttgaacccaggaggtggaggctgcagtgagccaagaccacgccactgcactccagcctaggtgatagagcaagactctgtctc i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57435084 180 + 159171411 tgaaacttcgtctctaataaaaatac-aaaaatgagctggacatggcggtgtgcacctgtagtcccagctacctgggaggctgaggcaggagaattgcttgaacccgggaggcagaggttgcagtgagccaagattgtgccactgcactccagcctgggcgacagagcaagattctgtctc i calJac3.chr5 I 1179 C 0 s saiBol1.JH378156 15552437 178 + 16356641 tgaaacctcgtctctagtaaaaacac-aaaaatgagctggacgtggtggctcacgcctgtcat-ccagctactcgggaggctgaggcagcagaatcgcttgaa-ccgagaggcggatgctgcagtgaaccgagatcaggccactgcactccagcctgggcgatacagcaagattctgtctc i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 398622 177 + 1231380 agaaaccctgtctctactaaaaatac-aaaaactagccaggtgtggtggcacacgcctgtaatcccagctgctcaggaggctgaggc---agaactgcttgaacccggaaggcggaggttgtagtgagccaagattgtgccactgcactccagcctgggtgacagagtgagaccctgtctc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1960006 180 + 11732439 agaaaccccatctctactaaaaatacaaaaaattagccagccctggtggcatgcacctgtaatcatagctacttgaaaggctgaggcaagagaatcacttgaa-ccaagaggcggatgctgcagtgaaccgataccaggctactgtaccccagcctgggtgatacagcaagattctgtctc i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I e colAng1.NW_012114444v1 4724451 277 - 5823884 I a score=101220.000000 s hg38.chr20_KI270871v1_alt 38703 10 + 58661 aaaaaaaaaa s panTro5.chr20 65614425 10 + 66533130 aaaaaaaaaa i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374666 10 + 62195757 aaaaaaaaaa i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789216 10 - 1017659 aaaaaaaaaa i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278018 10 - 110113093 aaaacaaaaa i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996270 10 - 92844088 aaaaaaaaaa i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645251 10 + 96509753 aaaaaaaaaa i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097174 10 - 16982598 aaaaaaaaaa i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944975 10 - 3785965 aaaaaaaaaa i cerAty1.NW_012001373v1 I 2 C 0 s chlSab2.chr2 89613509 10 - 90373283 aaaaaaaaaa i chlSab2.chr2 I 3 C 0 s manLeu1.NW_012104365v1 5496026 10 + 6149316 aaaaaaaaaa i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4724728 10 - 5823884 aaaaaaaaac i colAng1.NW_012114444v1 I 277 C 0 s calJac3.chr5 57435264 10 + 159171411 aaaaaaaaaa i calJac3.chr5 C 0 I 3 s saiBol1.JH378156 15552615 10 + 16356641 aaaaaaaaaa i saiBol1.JH378156 C 0 I 7 s cebCap1.NW_016107870v1 398799 10 + 1231380 aaagaaaaaa i cebCap1.NW_016107870v1 C 0 I 715 s aotNan1.NW_018500483v1 1960186 10 + 11732439 aaaaaaaaaa i aotNan1.NW_018500483v1 C 0 I 2 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=617706.000000 s hg38.chr20_KI270871v1_alt 38713 93 + 58661 ------aaaaaa----caaacaaacaaac-aaaaaaatgaagaccaagtccaaccagataaggacacacacaagccagtcctccgtgctcagttctccctggag s panTro5.chr20 65614435 91 + 66533130 ------aaaaga------aacaaacaaac-aaaaaaatgaagaccaagtccaaccagataaggacacacacaagccagtcctccgtgctcagttctccctggag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374676 85 + 62195757 ------aagaaa------------caaac-aaaaaaatgaagaccaagtccaaccagataaggacacacacaagccagtcctccgtgctcagttctccctggag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789226 97 - 1017659 ------aaaaaagaaacaaacaaacaaat-aaaaaaatgaaggccaagtccaaccagataaggacacacacaaaccagtcctccgtgctcagttctccctggag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278028 91 - 110113093 ------aaaaga------aagacacaaat-aaaaaaataaagaccaagtccaaccagataaggacacatacaagccagtcctccgtgctcagttctccctggag i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996280 88 - 92844088 ------aaaaga----------aacaaataaaaaaaatagagcccaagtccaaccagataaggacacacacaagcccgtctgccgtgctcagttctccctggag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645261 85 + 96509753 ------aaaaga----------aacaaat-aaaaaaatagagcccaagtccaaccagataagg--acacacaagcccgtctgccgtgctcagttctccctggag i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097184 87 - 16982598 ------aaaaga----------aacaaat-aaaaaaatagagtccaagtccaaccagataaggacacacacaagcccgtccgccgtgctcagttctccctggag i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2944985 87 - 3785965 ------aaaaga----------aacaaat-taaaaaaCAGAGTCCAAGTCCAACCAGATAAGGACGCACACAAGCCCGTCCGCCGTGCTCAGTTCCCCCTGGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613519 87 - 90373283 ------aaaaga----------aacaaat-aaaaaaatagagtccaagtccaaccagataaggacacacacaagcctgtctgccgtgctcagttctccctggag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496036 87 + 6149316 ------aaaaga----------aacaaat-aaaaaaCTAGAGTCCAAGTCCAACCAGATAAGGACACACACAAGCCCGTCCGCCGTGCTCAGTTCCCCCTGGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4724738 87 - 5823884 ------aaaaga----------aacaaat-gaaaaaaTAGAGTCCAAGTCCAACCAGATAAGGACACACACAAGCCCGTCCGCCGCGCTCAGCTCTCCCTGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435277 91 + 159171411 aagaaagaaaga----------aacaaAT-AAAAAAATAAAGACCAAGTTCAACTAGAAAAGGACACTCAC-AGCCCCTCCTCCC-CCTCCACCCTCCCTGGAG i calJac3.chr5 I 3 C 0 s saiBol1.JH378156 15552632 89 + 16356641 aagaaagaaaga----------aACAAAT-AAAAAAATAAGGACCAAGTCCAACCAGAAAAGGACACGCAC-GGCCC--GCTCCG-GCTCCGCTCTCCCTGGAG i saiBol1.JH378156 I 7 C 0 s aotNan1.NW_018500483v1 1960198 89 + 11732439 aagaaaaaaaga----------aacaaaT-AAAAAAATAAAGACCAAGTCCAACCAGAAAAGGACACTCA---GCCCCTCCTCCG-GCTCCGCTCCCCCTGGAG i aotNan1.NW_018500483v1 I 2 I 14 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398809 715 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=139167.000000 s hg38.chr20_KI270871v1_alt 38806 32 + 58661 gcctctgtCTTCACCGCCGCTGTCTCACAGTC s panTro5.chr20 65614526 32 + 66533130 gcctctgtCTTCACCGCCGCTGTCTCACAGTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374761 32 + 62195757 gcctctgtCTTCACCGCCGCTGTCTCACAGTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789323 32 - 1017659 gcctctgtCTTCACCGCCGCTGTCTCACAGTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278119 32 - 110113093 acctctgtCTTCACTGCCGCCGTCTCACAGTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996368 29 - 92844088 gcctctgtCTTCACCGCC---ATCTCACAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645346 29 + 96509753 gcctctgtCTTCACCGCC---ATCTCACAGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097271 29 - 16982598 gcctctgtCTTCACTGCC---ATCTCACAGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945072 29 - 3785965 GCCTCTGTCTTCGCCGCC---ATCTCACAGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613606 29 - 90373283 gcctctgtCTTCACCGCC---ATCTCACAGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496123 29 + 6149316 GCCTCTGTCTTCGCCGCC---ATCTCACAGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4724825 28 - 5823884 G-CTCTGTCGTCACCGCC---ACCTCACAGCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435368 19 + 159171411 --GCCTGTCTTCACTGC----GGCT------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15552721 19 + 16356641 --GCCTGTCTTCACGGC----GGCT------- i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1960287 14 + 11732439 I e cebCap1.NW_016107870v1 398809 715 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=679722.000000 s hg38.chr20_KI270871v1_alt 38838 86 + 58661 ACCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcttgtgtctttttcctcatgatgttaaacctggctttg s panTro5.chr20 65614558 86 + 66533130 ACCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcttgtgtctttttcctcatgatgttaaacctggctttg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374793 86 + 62195757 ACCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcttgtgtctttttcctcatgatgttaaacctggctttg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789355 86 - 1017659 ACCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcttgtgtctttttcctcgtgatgttaaacctggctttg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278151 86 - 110113093 GCCTGCAGCAGCCCAGGCCAGGCCTCTGGGCTGGTATTAACTCTCTGTCCTGTGTCTTTTTCCTCGTGATGTTAAACCTGACTTTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996397 86 - 92844088 GCCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcctgtgtctttttcctcatgatgttaaacctgactttg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645375 86 + 96509753 GCCTGCGGCAGCCCAGGCCGGGCctctgggctggtattaaccctctgtcctgtgtctttctcctcatgatgttaaacctgactttg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097300 86 - 16982598 GCCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcctgtgtctttttcctcatgatgttaaacctgactttg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945101 85 - 3785965 GCCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaa-cctctgtcctgtgtctttttcctcatgatgttaaacctgactttg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613635 86 - 90373283 GCCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaaccctctgtcctgtgtcttttttctcatgatgttaaacctgactttg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496152 85 + 6149316 GCCTGCAGCAGCCCAGGCCAGGCctctgggctggtattaa-cctctgtcctgtgtctttttcctcatgatgttaaacctgactttg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4724853 85 - 5823884 GCCTGCGGCGGCCCAGGCCA-GCCTCTGGGCTGCTATGAACCCTCTGTCCTGGGTCTTTTTCCTCACAATGTGAAACCTGACTCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435387 78 + 159171411 ------GGCAGCCCAGCCCAGGCCTCCAGGCAGCTTCCTACCCTC--TGCTGTGTCTTATTTCTCCTGATGTTAAACCTGACTTTG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15552740 77 + 16356641 ----GCGGCAGCCCAGGCCAGGCCTCCAGGTGGCTTCCGACCCT-----CTGTGTCTTCTTCCTCCTGATGTCAAACCTGACTTTG i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1960301 86 + 11732439 AGCTGCGGCAGCCCAGGCCAGGCCTCCGGGCGGCTTCCAACCCTCTGTGCTGTGTCTTCTTCCTCCTGATGTTAAACCTGACTTTG i aotNan1.NW_018500483v1 I 14 I 94 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398809 715 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=699432.000000 s hg38.chr20_KI270871v1_alt 38924 121 + 58661 ggt-gga--aagtggaatttgaccagatgagcacacggcaatatacggtctgcaacactgaccaacatggagtggccgtgaccgca-gcatgacccagaagctctagggagaacctgcctgcttg s panTro5.chr20 65614644 121 + 66533130 agt-gga--aagtggaacttgaccagatgagcacacggcaatgtacggtctgcaacactgaccaacatggagtggccgtgaccgca-gcatgacccagaagctctagggagaacctgcctgcttg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61374879 121 + 62195757 agt-gga--aagtggaacttgaccagatgagcacacggcaatgtacggtctgcaacactgaccaacatggagtggccgtgaccgca-gcatgacccagaagctctagggagaacctgcctgcttg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789441 122 - 1017659 ggtggga--aagtggaacttgaccagatgagcacacggcaatgtacggtctgcaacactgaccaacgtggagtggccgtgaccgcaggcatgacccagaagctcta-ggagaacctgcctgcttg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278237 121 - 110113093 CGT-GGA--AAGTGGAACTTGACCAGATGAGCACATGACAATGTACGGTCCGCAACACTGACCAACATGGACTggccgtgaccgca-gcacgacccagaagctctagggagaaactgcctgcttg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996483 121 - 92844088 ggt-gga--acgtggaacctgaccgggtgagcacacggcagtgtacggcctgcagcactgaccagcgtggagtggccgtgaccgca-gtgtgacccagaagctctagggagaacctgcctgcttg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645461 121 + 96509753 ggt-gga--acgtggaacctgaccggatgagcacacggcagtgtacggcctgcagcactgaccggcgtggagtggccgtgaccgca-gtgtgacccagaagctctagggagaacctgcctgcttg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097386 121 - 16982598 ggt-gga--acgtggaacctgaccggatgagcacacggcagtgtacggcctgcagcactgaccggcgtggagtggccgtgaccgca-gtgtgacccagaagctctagggagaacctgcctgcttg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945186 121 - 3785965 ggc-gga--acgtggaacctgaccagatgagcacacggcagtgtacggcctgcagcactgaccggcgtggagtggccgtgaccgca-gtgtgacccagaagctctagggagaacctgcctgcttg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613721 97 - 90373283 ggt-gga--acgtggaacctgaccggatgagcacacggcagtgtacggcctgcagcactgaccggcgtggagtggctGTGACCACG-GTGTGA------------------------cctgtttg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496237 121 + 6149316 ggt-gga--acgtggaacctgaccggaggagcacacggcagtgtacggcctgcagcactgaccggcgtggagtggccgtgaccgca-gtgtgacccagaagctctagggagaacctgcctgcttg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4724938 121 - 5823884 GGT-GGA--ACGTGGAACCTGACTGGATGAGCACGCGGCAATGTACGGTCTTCAGCACTGACCGGCGTGGcgtggccgtgaccgca-gtgtgacccagaagctctagagagaacctgcctgcttg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435466 91 + 159171411 GGT-GGA--ACGTGTGCCCTGTCGGGATGAGAACTCGGCAACGTACAGTTTGCAACACTGACCCATGTGGCGTGGCTGTGACCATG-GTGTGGTC------------------------------ i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15552818 77 + 16356641 GGT-GGAACACGTGTGCCCTGGTGGGA----------------TACGGTTCGCAGCACTGACCCACGTGGCGTGGCCGTGACCGCA-GTGTGGCC------------------------------ i saiBol1.JH378156 I 1 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1960387 94 + 11732439 I e cebCap1.NW_016107870v1 398809 715 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=16020.000000 s hg38.chr20_KI270871v1_alt 39045 2 + 58661 gg s panTro5.chr20 65614765 2 + 66533130 gg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375000 2 + 62195757 gg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789563 2 - 1017659 gg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278358 2 - 110113093 gg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996604 2 - 92844088 gg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645582 2 + 96509753 gg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097507 2 - 16982598 gg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945307 2 - 3785965 gg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613818 2 - 90373283 gg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496358 2 + 6149316 gg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725059 2 - 5823884 gg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435557 1 + 159171411 -G i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15552895 1 + 16356641 -G i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1960481 1 + 11732439 -G i aotNan1.NW_018500483v1 I 94 I 1 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 398809 715 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=1516118.000000 s hg38.chr20_KI270871v1_alt 39047 167 + 58661 gactccacgtagctcgtggcttttgtgattgaaacagcatcaataaaagcctgaccctgtggaaagacacaaacccgcgtggacctcgtGTCAAGCCCATCCTGTGTGCAAAGTGCCTCCAGAACCTGGGGACTTGGGCAAGCTCCCTTCAGCCAAGAACAAGAGGG s panTro5.chr20 65614767 167 + 66533130 gactccacgtagctcgtggcttttgtgattgaaacagcatcaataaaagcctgaccctatggaaagacacaaacccgcgtggacctcgtGTCAAGCCCATCCTGTGTGCAAAGTGCCTCCAGGACCTGGGGACTTGGGCAAGCTCCCTTCAGCCAAGAACAAGAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375002 167 + 62195757 gactccacgtagctcgtggcttttgtgattgaaacagcatcaataaaagcctgaccctatggaaagacacaaacccgcgtggacctcgtGTCAAGCCCATCCTGTGTGCAAAGTGCCTCCAGGACCTGGGGACTTGGGCAAGCTCCCTTCAGCCAAGAACAAGAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789565 167 - 1017659 aactccacgtagctcgtggcttttgtgattgaaacagcatcaataagagcctgaccctgtggaaagacacaaacccgtgtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCTGGGGACTCGGGCAAGCTCCCTTCAGCCAAGAACAAGAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278360 166 - 110113093 aactccacgtagctcgtggcttttgtgattgaaacagcatcaataaaagcctga-cctgtggaaagacacaaacccgtgtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTCGGGCAAGCTCCCTTCAGCCAAGAACAAGAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996606 167 - 92844088 aactccacgtagctcgtggcgtctgtgattgaaacagcatcagtgaaagtctgaccttgtggaaagacacaaacctgagtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTTGGGCAAGCTCCATTCAGCCAAGAGCAAGAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645584 167 + 96509753 aactccacgtagctcgtggcgtctgtgattgaaacagcatcagtgaaagtctgaccttgtggaaagacacaaacctgagtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTTGGGCAAGCTCCATTCAGCCAAGAGCAAGAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097509 167 - 16982598 aactccacgtagctcgtggcgtctgtgattgaaacagcatcagtgaaagtctgaccttgtggaaagacacaaacctgagtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTTGGGCAAGCTCCATTCAGCCAAGAGCAAGAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945309 167 - 3785965 aactccacgtagctcgtggcgtctgtgactgaaacagcatcagtgaaagtctgaccttgtggaaagacacaaacctgagtggacctcgtGTCAAGCCCGCCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTTGGGCAAGCTCCATTCAGCCAAGAGCAAGAAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613820 167 - 90373283 aactccacgtagctcgtggcgtctgtgattgaaacagcatcagtgaaagtctgaccttgtggaaagacacaaacctgagtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCTGGGGCCTTGGGCAAGCTCCATTCAGCCAAGAGCAAGAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496360 167 + 6149316 aacttcacgtagctcgtggcgtctgtgactgaaacagcatcagtgaaagtctgaccttgtggaaagacacaaacctgagtggacctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTTGGGCAAGCTCCATTCAGCCAAGAGCAAGAGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725061 167 - 5823884 aactccacgtagctcgcggcgtctgtgactgaaacggcatcagttaaagtctgaccttgtggaaagacacaaacctgagtgggcctcgtGTCAAGCCCGTCCTGTGTGCAAAGTGCCTCCAGGACCCGGGGCCTCGGGCAAGCTCCACTCAGCCAAGAGCAAGACGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435559 162 + 159171411 Gactccacgtagatcgtggct----tgactgaaacggcatcaataaaagcctgaccttgtggacagacagatacc-acgtggaccGCATGTCAAGCCCATCCTGTGTACAAAGCGCCTCCAGCATGTGGGGCCTCAGGAGAGCTCCCCCCAGCCAAGAACAAGAGGG i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15552897 161 + 16356641 Gactccacgaagctcgtggct----tgactgaaacggcatcaataaaagcctgaccttgtggacagacggaaacc-acgtggacctCACGTCGAGCCCATCCTGTGTACAAAGTGCCTCCAGCAT-TGGGGCCTCGGGAGAGCTGCCCCCGGCCGAGAACGAGAGGG i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 399524 162 + 1231380 Gactccacatagctcgtggct----tgactgaaacggcatcaataaaagcctgaccttgtggacagacagaaacc-acgtggacctCACGTCGGGCCTATCCTGTGTACAAAGCACCTCCAGCATGTGGGGCCTCAGGAGAGCTCCCCCCGGCCAAGAACAAGAGGG i cebCap1.NW_016107870v1 I 715 C 0 s aotNan1.NW_018500483v1 1960483 162 + 11732439 Gactccacgtagctcgtggct----tgactgaaacagcattaataaaagcctgaccttgtggaccaacagaaacc-acgtggacctCACGTCAAGCCCGTCCTGTGTACAAAGTGCTTCCAGCATGTGGGGCCTCAGGCGAGCTCCCCCCGGCCGAGAACAGGAGGG i aotNan1.NW_018500483v1 I 1 I 39 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=649423.000000 s hg38.chr20_KI270871v1_alt 39214 91 + 58661 TGGCCATGCTGTTCCAGGCTCGATTCA-CGACGGACACCCCCACGGCTTCCCTCTGCCCGGACC------CAGTCATCTCCCCACTGAACACCCTCTG s panTro5.chr20 65614934 91 + 66533130 TGGCCGTGCTGTTCCAGGCTCGATTCA-CGACAGACACCCCCACGGCTTCCCTCTGCCCAGACC------CAGTAATCTCCCCACTGAACACCCTCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375169 91 + 62195757 TGGCCGTGCTGTTCCAGGCTCGATTCA-CGACAGACACCCCCACGGCTTCCCTCTGCCCAGACC------CAGTAATCTCCCCACTGAACACCCTCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789732 91 - 1017659 TGGCCGTGCTGTTCCAGGCTCGATTCA-CGACGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCCCCAATGAACACCCTCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278526 91 - 110113093 TGACCGTGCTGTTCCAGGCTCGATTCA-CAACGGACACCCCCATGGCTTCCCTCTGTCCGGACC------CGGCCATCTCCCCAGTGAACACCCTCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996773 91 - 92844088 TGACCGAGCCACTCCAGGTTCAATTCA-CGGCGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCCCCCATGAACACCCCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645751 91 + 96509753 TGACCGAGCCACTCCAGGTTCAATTCA-CGGCGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCCCCCATGAACACCCCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097676 91 - 16982598 TGACCGAGCCACTCCAGGTTCAATTCA-CGGCGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCCCCCATGAACACCCCCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945476 91 - 3785965 TGACCGAGCCACTCCAGGTTCAATTCA-CGGCGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCAGCCATGAACACCCCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89613987 91 - 90373283 TGACCAAGCCATTCCAGGCTCAATTCA-CGGCGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCCCCCATGAACACCCCCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496527 91 + 6149316 TGACCGAGCCACTCCAGGTTCAATTCA-CGGCGGACACCCCCATGGCTTCCCTCTGCCCGGACC------CAGTCATCTCAGCCATGAACACCCCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725228 89 - 5823884 CGACCGAGCCATTCCGGGCTCAA-TCA-TGACAGACACCCCCGTGGCTTCCCTCTGCCTGGACC------CAGTCATCTCCCCCATGAACA-CCCCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435721 88 + 159171411 CGGCCTTGCCACTCCAGGCTCGATTCACCCACAGG----TGAATCGCTTCCCACTGCCCAGACC------CAGTCATCTCCCCAACAAACACCACCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553058 90 + 16356641 CGTTCGTGCCGCTCCAGGCTCGATTCACCCACGGGCACCCGCACTGCTTCCCTCTGCCCAGACC--------GTCATCTCCCCCACAAACACCACCCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 399686 98 + 1231380 CGTCCGTGCTGCTCCAGGCTCGATTCACCCACAGGCACCCCCATCGCTTCTCTCTGCCCAGACCCAGTCCCAGTCATCTCCCCCACAAACACCGCCCA i cebCap1.NW_016107870v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1960645 39 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=2635050.000000 s hg38.chr20_KI270871v1_alt 39305 302 + 58661 GATGTGGGGAGGCCAGCATGGCCCCCTGCAGCCCCCCT-CCCACTCGCTGGAG-ACCCCCAAGTCCAGGCAGCCTGAGTCCTCTGGCCTGGGCAGGCGCAGTCCCCATAGCTCCACCTTCCGACTCCCCAGCAGCGGCCTCTGCTGCACGGCCCAGGGCGT---CCAGGGCAGGGAAGGCGGGGCACAGGGTGGTCCTCCCAAGATCT------GCCCCGGGAAGGACCACGGCCGTGCTTCAGAAGCACCCGGGACCACACAGTCTGAAGCAGAGGTGGAG------GCTTCGGGCACAGGCGGCCCGGCCAAGGTCA s panTro5.chr20 65615025 302 + 66533130 GATGTGGGGAGGCCAGCATGGCCCCCTGCAGCCCCCCT-CCCACTCGCTGGAG-ACCCCCAAGTCCAGGCAGCCTGAGTCCTCTGGCCTGGGCAGGCGCAGTCCCCATAGCTCCGCCTTCCGACTCCCCAGCAGCGGCCTCTGCTGCACGGCCTAGGGCGT---CCAGGGCAGGGAAGGCGGGGCACAGGGTGGTCCTCCCAAGATCT------GCCCCGGGAAGGACCATGGCCGTGCTTCAGAAGCACCCGGGACCACGCGGTCTGAAGCAGAGGTGGAG------GCTTCGGGCACAGGCGGCCCGGCCAAGGTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375260 302 + 62195757 GATGTGGGGAGGCCAGCATGGCCCCCTGCAGCCCCCCT-CCCACTCGCTGGAG-ACCCCCAAGTCCAGGCAGCCTGAGTCCTCCGGCCTGGGCAGGCGCAGTCCCCATAGCTCCGCCTTCCGACTCCCCAGCAGCGGCCTCTGCTGCACGGCCCAGGGCGT---CCAGGGCAGGGAAGGCGGGGCACAGGGTGGTCCTCCCAAGATCT------GCCCCGGGAAGGACCATGGCCGTGCTTCAGAAGCACCCGGGACCACGCGGTCTGAAGCAGAGGTGGAG------GCTTCGGGCACAGGCGGCCCGGCCAAGGTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 789823 303 - 1017659 GATGTGGGGAGGCCAGCATGGCCCCCTGCAGCCCCCCTCCCCACTCGCTGGAG-ACCCCCAAGTCCAGGCAGCCTGAGTCCTCCGGCCCGGGCAGGCGCAGTCCCCATAGCTCCACCTTCCGACTCCCCAGCAGCGGCCTCTGCTGCACGGCCcagggcgg---ccagggcagggaaggcggggcaCAGGGTGGTCCTCCCAAGATCT------GCCCCGGGAAGGACCATGGCCGTGCTTCAGAAGCACCCGGGACCATGCGGTCTGAAGCAGAGGTGGAG------GCTTCGGGCACAGGCGGCCCAGCCAAGGTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278617 302 - 110113093 GATGTGGGGAGGCCGGCATGGCCCCCTGCAGTCCCCCT-CCCACTTGCTGGAG-ACCCCCAAGTCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCGCAGGCCCCATAGCTCCGCCTTCCGACTCCCCAGCAGCGGCCTCTGCTGCACGGCCCAGGGCAT---CCAGGGCAGGGAAGGCGGGGCACAGGGTGGTCCCCCCGAGATCT------GCCCCAGGAAGGACCACGGCCATGTTTCAGAAGCACCGGGGACCAGGCGGTCTGAAGCAGAGGTGGAG------GCTTCGGGCACAGGCGGCCCGGCCAAGGTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91996864 305 - 92844088 GATGTGGGGAGGCCGGCATGGCCCCCTGTAGCCCCCCT-CCAGCTCGCTGGAG-ACCCCCACATCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCGTAGGTCTGCCTTCCGACTCGCCAGCAGCGGCCTCTGCTGCGCCGCCGGGAACGTTGTCCAGGGCAGGGAAGGCGGGGCACAGGGTGGTGCTCCCGAGACCT------GCCGCGGGAAGGACCACGGCCGTGTTTCAGAAGCACCCAGGACCATGCGGTCTGAAGCAGAGGTGGAG------GTTTCGGGCACAGGcagcccggccgaggtca i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95645842 304 + 96509753 GATGTGGGGAGGCCGGCATGGCCCCCTGTAG-CCCCCT-CCAGCTCGCTGGAG-ACCCCCACATCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCGTAGCTCTGCCTTCCGACTCGCCAGCAGCGGCCTCTGCTGCGCCGCCGGGAACGTTGTCCAGGGCAGGGAAGGCGGGGCACAGGGTGGTGCTCCCGAGACCT------GCCCCGGGAAGGACCACGGCCGTGTTTCAGAAGCACCCAGGACCATGCGGTCTGAAGCAGAGGTGGAG------GTTTCGGGCACAGGCAGCCCGGCCGAGGTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16097767 305 - 16982598 GATGTGGGGAGGCCGGCATGGCCCCCTGTAGCCCCCCT-CCAGCTCGCTGGAG-ACCCCCACATCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCGTAGCTCTGCCTTCCGACTCGCCAGCAGCGGCCTCTGCTGCGCCGCCGGGAACGTTGTCCAGGGCAGGGAAGGCGGGGCACAGGGTGGTGCTCCCGAGACCT------GCCCCGGGAAGGACCACGGCCGTGTTTCAGAAGCACCCGGGACCATGCGGTCTGAAGCAGAGGTGGAG------GTTTCGGGCACAGGCAGCCCGGCCGAGGTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945567 305 - 3785965 GATGTGGGGAGGCCGGCACGGCCCCCTGTAGCCCCCCT-CCAGCTCGCCGGAG-ACCCCCACGTCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCGTAGCTCCGCCTTCTGACTCGCCAGCAGCAGCCTCTGCTGCGCCGCCGGGAACGTTGTCCAGGGCAGGGAAGGCGGGGCACGGGGTGGTGCTCCCGAGACCT------GCCCCGGGAAGGACCACGGCCGTGTTTCAGAAGCACCCAGGACCATGCGGTCTGAAGCGGAGGTGGAG------GCTTCGGGCACAGGcagcccggccgaggtca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614078 305 - 90373283 GATGTGGGGAGGCCAGCATGGCCCCCTGTAGCCCCCCT-CCAGCTCGCTGGAG-ACCCCCACGTCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCGTAGCTCTGCCTTCCGACTCGCCAGCAGCGGCCTCTGCTGCGCCGCCGGGAACGTCGTCCAGGGCAGGGAAGGCGGGGCACAGGGTGGTGCTCCTGAGACCT------GCCCCGGGAAGGACCACGGCCATGTTTCAGAAGCACCCAGGACCATGCGGTCTGAAGCAGAGGTGGAG------GCTTCGGGCACAGGCAGCCCGGCTGAGGTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496618 305 + 6149316 GATGTGGGGAGGCTGGCATGGCCCCCTGTAGCCCCCCT-CCAGCTTGCTGGAG-ACCCCCACGTCCAGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCGTAGCTCTGCCTTCCGACTCGCCAGCAGCGGCCTCTGCTGCGCCGCCGGGAACGTTGTCCAGGGCAGGGAAGGCGGGGCACGGGGTGGTGCTCCCGAGACCT------GCCCCGGGAAGGACCACGGCCGTGTTTCAGAAGCACCCAGGACCATGCGGTCTGAAGGAGAAGTGGAG------GCTTCGGGCACAGGCAGCCCAGCCGAGGTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725317 304 - 5823884 GACGTGGGGAGGCCGGCACGGTCCCCTGT-GCAACCCT-CCAGCTCGCCGGAG-AGCCCCAAGTCCGGGCAGCCTGAGTCCTCCAGCCTGGGCAGGCACAGTCCCCATAGCTCTGCCTTCCGACTCCCCAGCAGCGGCCTCTGCTGCGCAGCTGGGAACGTCGCCCAGGGCAGGGAAGGTGGGGCACAGGGTGGTCCCCCCGAGATCT------GCCCGGGGAAGGACCACGGCCGTGTTTCAGAAGCACCCAGGACCACGTGGTCTGAAGCAGAGGTGGAG------GCTTTGGGCACAGGCGgcccggccgaggtca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57435809 280 + 159171411 GATGTGGAGAGGCCGGCATGGCCCCCTGCAGCCCCCCT-CCAGCTCACTGGAGCCCCCCCAAGTC-------CCTGAGTCCTCCAGCCTGGGCAGACGAGGTCCCCACAGCTCTGCCTTCCGACTCCCCAACAGTGGCCTCTGCTGCGCGG-------------CCCGGGAAGGGAAGATGGGGGACAGGGTGGTCCTCCTGAGTCCT------GCC-CAGGAAGGA-CACGGCCATGTTTCAGAAGCACGCAGGACCATGCGGTGTGAAGCAGAGGCATGG---------TC-AAGACAGGCGGCTCGGCCAAGGTCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553148 270 + 16356641 GATGTGGAGAGGCC-GCATGGCCCCCTGCAGCCCCCCT-CCAGCCCGCTGGAGCCCCCCCAAGTC-------CCTGAGTCCTCCAGCCTGGGCAGACGCGGTCCCCACAGCTCTGCCTTCCGGCTCCCCAGCAGCGGCCTCTGCTGCACGG-------------CCCGGGAAGGGAAGACGGGGGACAGGGCGGTCCCCCTGAGACCT------GCC-CGGGAAGGG-CACGGCCGTGTTTCAGAAGCACACAGGGCCATGCGGTCTGAGGCGGAGGC-------------------ACAGGCGGCTGGGCCAAGGTCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 399784 288 + 1231380 GATGTGGGGAGGCG-GCATGACCCCCTGCAGCCCCCCT-CCAGCCCGCTGGGGCCCCCCCAAGTC-------CCTGAGTCCTCCAGCCTTGGCAGACGCCGTCCCCACAGCTCTGCCTTCCAGCTCCCCAGCAGTGGCCTCTGCTGCGCGG-------------CTCTGGAGGGGAAGACGGGGGACAAGGTGGTCCTCCTGAGACCT------GCC-CGGGAAGGA-CACGGCCGTGTTTCAGAAGCACGCAGGACCGTGCAGTCTgaagcggaggcggaggcggaggcttc-ggcacaggcggCTCGGCCGAGGTCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1960684 278 + 11732439 GATGTGGGGAGGCC-GCATGGCCCCCTGCAGCCCCCCT-CCAGCCCGCTGGAG-CCCCCCAAGTC-------CCTGAGTCCTCCAGCCTGGGCAGACGCAGTCCCCACAGCTCTGCCTTCCGACTCCCTAGCAGTGGCCTCTGCTGCGCGG-------------CCCAGGAA---------GGGTACCGGGTGGTCCTCCTGAGAACTGCCTGGGCC-TGGGAAGGA-CGCGGCTGTGTTTCAGAAGCACACAGGACCATGCGGTCTGAAGCAGAGGCGGAG------GCTTC-GGCACAGGCAGCTCGGCCAAGGTCA i aotNan1.NW_018500483v1 I 39 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174407 318 + 22939663 I a score=651916.000000 s hg38.chr20_KI270871v1_alt 39607 69 + 58661 GCCCCA--CCAACTGCCCATTCCAGCACCAG--AGCCAACTGAGGCCTGGCACTGCTCAGCCACAGGCAGCGG s panTro5.chr20 65615327 69 + 66533130 GCCCCA--CCAACTGCCCATCCCAGCACCAG--AGCCAACTGAGGCCTGGCACTGCTCAGCCACAGGCAGCGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375562 69 + 62195757 GCCCCA--CCAACTGCCCATCCCAGCACCAG--AGCCAACTGAGGCCTGGCACTGCTCAGCCACAGGCAGCGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790126 68 - 1017659 GCCCCA--CCAACTGCCCATCCCAGCACCAG--AGCCAA-TGAGGCCTGGCACTGCTCAGCCACAGGCAGCGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278919 69 - 110113093 GCCCCA--CCACCTGCCCATCCCAGCACCAG--AGCCGACTGAGGCCTGGCACTGCGCAGCCACAGGCAGTGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997169 69 - 92844088 gcccca--ccacctgcccatcccagcaccag--AGCCAATCGAGGCCGGGCACTCCTGAGCCACCGGCGACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95646146 69 + 96509753 GCCCCA--CCACCTGCCCATCCCAGCACCAG--AGCCAATCGAGGCCGGGCACTCCTGAGCCACCGGAGGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16098072 69 - 16982598 GCCTCA--CCACCTGCCCATCCCAGCACCAG--AGCCAATCGAGGCCGGGCACTCCTGAGCCACCGGCGGCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945872 69 - 3785965 gcccca--ctacctgcccatcccagcaccag--agccagccgagGCGGGGCACTGCTGAGCCACCGGCGGCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614383 69 - 90373283 GCCCCA--CCACCTGCCCATCCCAGCACCAG--AGCCAACCGAGGCTGGGCACTGCTGAGCCACCGGCGGCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496923 69 + 6149316 GCCCCA--CCACCTGCCCATCCCAGCACCAG--AGCCAGCCGAGGCGGGGCACTGCTGAGCCACCGGCGGCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725621 69 - 5823884 gcccca--ccccctgcccatcccagcaccag--agccagccgaggccGGGCACTGCTGAGCCACCGGCAGCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57436089 69 + 159171411 GCCCCA--CAACCTGCCCATCCCAGCAGCAG--AGCCAACTGAGACCTGGCCCTGCTCAGCCACAGGCGGCGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553418 69 + 16356641 GCCCCA--CAACCTGCCCATCCCAGCACCAG--AGCCAGTGGAGACCTGGCCCTGCTCAGCCACAGGCGGCGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 400072 69 + 1231380 GCCCCA--CAACCTGCCCATCCCAGCACCAG--AGCCACCTGAGACCTGGCCCTGCTCCGCCACAGGCGGCGG i cebCap1.NW_016107870v1 C 0 I 68 s aotNan1.NW_018500483v1 1960962 69 + 11732439 GCCCCA--CAACCTGCCCATCCCAGCACCAG--AGCCAACTGAGACCTGGCCCTGCACGGCCACAGGCGGCGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22174725 70 + 22939663 GCCCTATCCCCACTGCCTGTACCAACACCAGGAGGCCAAGCTGGCCTAGG---TGCTCAGCTGCAGGCATCGG i otoGar3.GL873542 I 318 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=180198.000000 s hg38.chr20_KI270871v1_alt 39676 26 + 58661 CGGCAGAAACTGTGCCTGTGAAGGCT s panTro5.chr20 65615396 26 + 66533130 CGGCCGAAACTGTGCCTGTGAAGGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375631 26 + 62195757 CGGCCGAAACTGTGCCTGTGAAGGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790194 26 - 1017659 CGGCAGAAACTGTGCCTGTGAAGGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109278988 26 - 110113093 CGGCAGAAACTGTACCTTTGAAAGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997238 26 - 92844088 TGGTAGAAACCGTGCCTTTGAAGGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95646215 26 + 96509753 TGGTAGAAACCGTGCCTCTGAAGGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16098141 26 - 16982598 TGGTAGAAACCGTGCCTTTGAAGGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945941 26 - 3785965 TGGTAGAAACCGTGCCTTTGAAGGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614452 26 - 90373283 TGGTAGAAACCGCGCCTTTGAAGGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5496992 26 + 6149316 TGGTAGAAACTGTGCCTTTGAAGGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725690 26 - 5823884 TGGTAGAAACCGCGCCTTTGAAGGTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57436158 20 + 159171411 ------GGATGGTGCCTTCAAAGACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553487 20 + 16356641 ------GGACCCCGCCTTCGAAGGCT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1961031 20 + 11732439 ------GGGTGGCGCCTTCGAAGGCT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22174795 26 + 22939663 CAGCGGGGACTGTGCCCTCAAAGGCT i otoGar3.GL873542 C 0 I 1115 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 400141 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=345142.000000 s hg38.chr20_KI270871v1_alt 39702 51 + 58661 CTGG---CCCAGCACCCAAACCAAAGATGAAGGCGCAGGGGCCAAAGCCACATT s panTro5.chr20 65615422 51 + 66533130 CTGG---CCGAGCACCCAAACCAAAGATGAAGGCGCAGGGGCCAAAGCCACATT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375657 51 + 62195757 CTGG---CCGAGCACCCAAACCAAAGATGAAGGCGCAGGGGCCAAAGCCACATT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790220 51 - 1017659 CTGG---CCGAGCACCCAAACCAAAGATGAAGGCGCAGGGGCCAAAGCCACATT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279014 54 - 110113093 CTGGCCACCGAGCACCCAAACCAAAGATGAAGGCACAGGCGCCAAAGCCACATT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997264 54 - 92844088 CTGGCCACCGAGCACCCACACCAGAGATGGAGGTGCAGGGGCCAAAGCCACATT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95646241 54 + 96509753 CTGGCCACCAAGCACCCACACCAGAGATGGAGGTGCAGGGGCCAAAGCCACATT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16098167 54 - 16982598 CTGGCCACCGAGCACCCACACCAGAGATGGAGGTGCAGGGGCCAAAGCCACATT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2945967 54 - 3785965 CTGGCCACCGAGCACCCACACCAGAGATGGAGGTGCAGGGACCAAAGCCACATT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614478 54 - 90373283 CTGGCCACCGAGCACCCACACCAGAGATGGAGGCGCAGGGGCCAAAGCCACATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5497018 54 + 6149316 CTGGCCACCGAGCACCCACACCAGAGATGGAGGCGCAGGGACCAAAGCCACATT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725716 52 - 5823884 CTGG--ACCGAGCACCCACACCAGAGATGGAGGTGCAGGGACCAAAGCCACGTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57436178 48 + 159171411 CTGTCCACCGGGCAGCAAAACCAGAGGCGAAGGGGCAGGGGCCACGTC------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553507 48 + 16356641 CTGCCCACCGGGCAGCAAAACCATGGGCGAAGGGGCAGGGGACACGTC------ i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1961051 48 + 11732439 CTGTCCACCGGGCAGCAAAACCAGAGGCGAAGGGGCAGGGGCCACGTC------ i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 400141 68 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174821 1115 + 22939663 I a score=852397.000000 s hg38.chr20_KI270871v1_alt 39753 95 + 58661 TTAAAGCGTCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCAAGTTCAGATTCTACCCACGTACACCCCGAGGACGTCCCAGCTCCATGC s panTro5.chr20 65615473 95 + 66533130 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCAAGTTCAGATTCTACCCACACACACCCTGAGGACGTCCCAGCCCCATGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375708 95 + 62195757 TTAAAGCGTCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCAAGTTCAGATTCTACCCACACACACCCTGAGGACGTCCCAGCCCCATGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790271 95 - 1017659 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCAAGTTCAGATTCTACCCACACACACCCCAAGGACGTCCCAGCCCCATGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279068 95 - 110113093 TTAAAGCATCTCATGTGAAAACTGTCGGCATCTCTAGCGTGAGCCCAAGTTCAGATTCTCCCCACACACCCCCTGAGGACATCACAGCCCCACGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997318 95 - 92844088 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCCAGTTCACATTCCACCCACACCCTCGCCGAGGACGTCCCAGCCCCGTGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95646295 95 + 96509753 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCCAGTTCACATTCCACCCACACCCTCGCCGAGGACGTCCCAGCCCCGTGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16098221 95 - 16982598 TTAAAGCATCTCATGTGAAAACCGTCAGCATCTCTAGCGTGAGCCCCAGTTCACATTCCACCCACACCCTCGCCGAGGACGTCCCAGCCCCGTGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2946021 95 - 3785965 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCCAGTTCAGATTCCACCCACACACCCACCGAGGACGTCCCAGCCCCGTGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614532 95 - 90373283 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCCAGTTCAGATTCCACCCACACCCTCGCGGAGGACGTCCCAGCCCTGTGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5497072 95 + 6149316 TTAAAGCATCTCATGTGAAAACTGTCAGCATCTCTAGCGTGAGCCCCAGTTCAGATTCCACCCACACACCCACCGAGGACGTCCCAGCCCCGTGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725768 95 - 5823884 TTAAAGCATCTCATGTGAACACTGTCAGCATCCCTAGCATGAGCCCCAGTTCAGATTCCACCCACACACTCGCCGAGGACGTCCCAGCCCCGTGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57436226 92 + 159171411 TTAAAGCGTCTCATGTGAAACC--TCAGCATCTCTAGCGTGAGCCCAAGTCCAGATTCCACCCACACGCACCCTGAACACGCCCCAG-CCCATGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553555 91 + 16356641 TTAACGCGTCTC--GCGAAACC--TCAGCACCTCTAGCGCGAGCCCAAGTCCGGATTCCACCCACACGCACCCTGAAGACGCCCCAGCCCCACGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 400209 93 + 1231380 TTAAAGCGTCTCGTGTGAAAGC--TCAGCATCTCTAGCGTGAGCCCAAGTCCAGATTCCACTCACACGCACCCTGAAGACGCCCCAGCCCCATGC i cebCap1.NW_016107870v1 I 68 I 782 s aotNan1.NW_018500483v1 1961099 92 + 11732439 TTAAAGCGTCTCATGTGAAACC--TCGGCATCTCTAGTGTGAGCCCAAGTCCAGATTCCACCCACATGCACCCTGAAGACG-CCCGGCCCTATGC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174821 1115 + 22939663 I a score=167527.000000 s hg38.chr20_KI270871v1_alt 39848 23 + 58661 CATTGAGAAGCTGTAA-TCCAGTG s panTro5.chr20 65615568 23 + 66533130 CATTGAGAAGCTGTAA-TCCAGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375803 23 + 62195757 CATTGAGAAGCTGTAA-TCCAGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790366 23 - 1017659 CATTGAGAAGCTGTAA-TCCAGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279163 23 - 110113093 CACTGAGAAGCTGTAA-TCCAGTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997413 23 - 92844088 CATTGAGAAGCAATAA-TCCAGCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95646390 23 + 96509753 CATTGAGAAGCAATAA-TCCAGCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16098316 23 - 16982598 CATTGAGAAGCAATAA-TCCAGCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2946116 23 - 3785965 CATCGAGAAGCAATAA-TCCAGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614627 23 - 90373283 CATTGAGAAGCAATAA-TCCAGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5497167 23 + 6149316 CATTGAGAAGCAATAA-TCCAGTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725863 23 - 5823884 CATTGAGAAGCAATAA-TCCAGTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57436318 24 + 159171411 CGCTGAGAGGCTGTAATCCCCATG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15553646 23 + 16356641 CGCGGAGAAGCCGTAA-CCCCGTG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1961191 23 + 11732439 CGCCGAGAGGCTGTAA-TCCCGTG i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 400302 782 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e otoGar3.GL873542 22174821 1115 + 22939663 I a score=117832.000000 s hg38.chr20_KI270871v1_alt 39871 13 + 58661 CCTGCCTCTGAGC-- s panTro5.chr20 65615591 13 + 66533130 CCTGCCTCTGAGC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375826 13 + 62195757 CCTGCCTCTGAGC-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790389 13 - 1017659 CCTGCCTCTGAGC-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279186 13 - 110113093 CCTGCCTCTGCGC-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997436 13 - 92844088 CCCGCCTCTGAGC-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95646413 13 + 96509753 CCCGCCTCTGAGC-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16098339 13 - 16982598 CCCGCCTCTGAGC-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2946139 13 - 3785965 CCCGCCTCTGAGC-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89614650 13 - 90373283 CCCGCCTCTGAGC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5497190 13 + 6149316 CCCGCCTCTGAGC-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4725886 13 - 5823884 CCCGCTTGTGAGC-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57436342 13 + 159171411 CCCGCCTCTGAGC-- i calJac3.chr5 C 0 I 787 s saiBol1.JH378156 15553669 13 + 16356641 CCCGCCTCTGAGC-- i saiBol1.JH378156 C 0 I 732 s aotNan1.NW_018500483v1 1961214 13 + 11732439 ACCGCCTCTGAGC-- i aotNan1.NW_018500483v1 C 0 I 1044 s otoGar3.GL873542 22175936 15 + 22939663 cctgagtctgagttc i otoGar3.GL873542 I 1115 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 400302 782 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=3315.000000 s hg38.chr20_KI270871v1_alt 39884 2 + 58661 TG s panTro5.chr20 65615604 2 + 66533130 TG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375839 2 + 62195757 TG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790402 2 - 1017659 TG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279199 2 - 110113093 TG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91997449 2 - 92844088 CG i rheMac8.chr10 C 0 I 1793 s macFas5.chr10 95646426 2 + 96509753 CG i macFas5.chr10 C 0 I 2070 s macNem1.NW_012014244v1 16098352 2 - 16982598 CA i macNem1.NW_012014244v1 C 0 I 1203 s cerAty1.NW_012001373v1 2946152 2 - 3785965 CG i cerAty1.NW_012001373v1 C 0 I 1784 s chlSab2.chr2 89614663 2 - 90373283 CG i chlSab2.chr2 C 0 I 1032 s manLeu1.NW_012104365v1 5497203 2 + 6149316 CG i manLeu1.NW_012104365v1 C 0 I 1795 s colAng1.NW_012114444v1 4725899 2 - 5823884 CG i colAng1.NW_012114444v1 C 0 I 1000 s saiBol1.JH378156 15554414 1 + 16356641 c- i saiBol1.JH378156 I 732 C 0 s otoGar3.GL873542 22175951 2 + 22939663 tg i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1961227 1044 + 11732439 I e cebCap1.NW_016107870v1 400302 782 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e calJac3.chr5 57436355 787 + 159171411 I a score=44681.000000 s hg38.chr20_KI270871v1_alt 39886 5 + 58661 agggc s panTro5.chr20 65615606 5 + 66533130 agggc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375841 5 + 62195757 agggc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790404 5 - 1017659 agggc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279201 5 - 110113093 agggc i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999244 5 - 92844088 agggc i rheMac8.chr10 I 1793 C 0 s macFas5.chr10 95648498 5 + 96509753 agggc i macFas5.chr10 I 2070 C 0 s macNem1.NW_012014244v1 16099557 5 - 16982598 agggc i macNem1.NW_012014244v1 I 1203 C 0 s cerAty1.NW_012001373v1 2947938 5 - 3785965 agggc i cerAty1.NW_012001373v1 I 1784 C 0 s chlSab2.chr2 89615697 5 - 90373283 agggc i chlSab2.chr2 I 1032 C 0 s manLeu1.NW_012104365v1 5499000 5 + 6149316 agggc i manLeu1.NW_012104365v1 I 1795 C 0 s colAng1.NW_012114444v1 4726901 5 - 5823884 agggc i colAng1.NW_012114444v1 I 1000 C 0 s saiBol1.JH378156 15554415 5 + 16356641 agggc i saiBol1.JH378156 C 0 I 6 s otoGar3.GL873542 22175953 5 + 22939663 agggc i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1961227 1044 + 11732439 I e cebCap1.NW_016107870v1 400302 782 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e calJac3.chr5 57436355 787 + 159171411 I a score=270572.000000 s hg38.chr20_KI270871v1_alt 39891 37 + 58661 agcaggctggaaactcagcacgacttccatgttgcgg s panTro5.chr20 65615611 37 + 66533130 agcaggctggaaactcagcacgacttccacgttgcgg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375846 37 + 62195757 agcaggctggaaactcagcacgacttccacgttgcgg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790409 37 - 1017659 agcaggctggaaactcagcacgacttccacgttgcgg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279206 37 - 110113093 agcaggctggaaactcggcacgacttccacgttgccg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999249 37 - 92844088 agcaggcgggacactcggcacgacttccacgttgccg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95648503 37 + 96509753 agcaggcgggaaactcggcacgacttccacgttgccg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16099562 37 - 16982598 agcaggcgggaaactcggcacgacttccactttgccg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2947943 37 - 3785965 agcaggcgggaaactcggcacgacttccacgttgccg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89615702 37 - 90373283 agcaggcgggaaactcagcacgacttccacgtggccg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499005 37 + 6149316 agcaggcgggaaactcggcacgacttccacattgccg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4726906 37 - 5823884 agcaggcgggaaactcggcacaatttccacgttgccg i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15554426 37 + 16356641 agcaggctggaaactcggcacggcgtccacgctgccg i saiBol1.JH378156 I 6 C 0 s cebCap1.NW_016107870v1 401084 37 + 1231380 agcaggctggaaacacggcacggcttccacactgccg i cebCap1.NW_016107870v1 I 782 C 0 s otoGar3.GL873542 22175958 23 + 22939663 aacaggatggaaGATTGGTGAGG-------------- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1961227 1044 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I e calJac3.chr5 57436355 787 + 159171411 I a score=2275744.000000 s hg38.chr20_KI270871v1_alt 39928 338 + 58661 tcttgaggaaaatcctttt-tcttccggaaacctcag--tctttgc-tctcaaggcctcagctgctgggacgacg---cccacccccacggcagagggtcactagcttcacttgaag-tccgctgagctaagtgt---tcatgccga-aaaacacctgcacagcagcgtcgaggcaggtgcgtggccaccagccgggcaccatggcgcagctgcgtgtatacaGAGT-GTATGCAT-ACAGTGGGCATCACGGGCTGGGAGAGGACACAGGGGCCTCGGCCAGAGGCCTGGGACTGCAGCAGGAACGGGCTGATTCAGCGGTGCAGGCACAGAACACCCTGACTGATGCTGA s panTro5.chr20 65615648 338 + 66533130 tcttgaggaaaatcctttt-tcttccggaaacctcag--tctttgc-tctcaaggcctcagctgctgggacgagg---cccacccccacagcagagggtcaccagcttcacttgaag-tccactgagctaagtgt---tcatgccga-aaaacacctgcacagcagcgtcgaggcaggtgcgtggccaccagcagggcaccatggcgcagcTGCGTGTATGCAGAGT-GTATGCAT-ACAGTGGGCATCACGGGCTGGGAGAGGACACAGGGGCCTCGGCCAGAGGCCTGGGACTGCAGCAGGAACGGGCTGATTCAGCGGTGCAGGCACGGAACACCCTGACTGATGCTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61375883 338 + 62195757 tcttgaggaaaatcctttt-tcttccggaaacctcag--tctttgc-tctcaaggcctcagctgctgggacgagg---cccacccccacggcagagggtcaccagcttcacttgaag-tccgctgagctaagtgt---tcatgccga-aaaacacctgcacagcagcgtcgaggcaggtgcgtggccaccagcagggcaccatggcgcagcTGCGTGTATGCAGAGT-GTATGCAT-ACAGTGGGCATCACGGGCTGGGAGAGGACACAGGGGCCTCGGCCAGAGGCCTGGGACTGCAGCAGGAACGGGCTGATTCAGCGGTGCAGGCACGGAACACCCTGACTGATGCTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790446 322 - 1017659 tcttgaggaaaatcctttt-tcttccggaaacctcag--tctttgc-tctcaaggcctcagctgccgggacgagg---cccacccccatggcagagggtcactagcttcacttcaag-tcc-----gctaagtgt---tcatgccga-aaaacacctgcacagcagcgtcgaggcaggtgcgtggccaccagccgggcaccatggcgcagct-----------gagt-ggatgcat-aCAGTGGGCATCACGGGCTGGGAGAGGACACAGGGGCCTCGGCCAGAGGCCTGGGACTGCAGCAGGAACGGGCTGATTCAGCGGTGCAGGCACAGAACACCCTGACTGATGTTGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279243 327 - 110113093 tcttgaggaaaatcctttt-tcttccggaaacctcag--tctttgc-tctcaaggcctcagctgctgggacgagg---cccacccccatggcagagagtcactagcttcacttgaag-tccgctgagctcagtgt---tcatgccgg-aaaacccctgcacagcagcgtccaggcaggtgcgtggccaccagccgggcaccgtgacgcggct-----------gagt-ggatgcat-aaagtGGGCATCACGGGCTGGGAGAGGACACAGGGGCCTCGGCCAGAGGCCTGGGCCTGCAGCAGGAACGGGCTGATTCAGCGGTGCAGGCACAGAACACCCTGACTGATGTTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999286 316 - 92844088 tcttgagaaaaatctcctt-tcttctggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgag-----ccccccccatggcggagagtcactagcttcacttgaag-tccgctgagctaagtgt---tcccaccag-aaaacacctgcacagcagcatcgaggcaggtgcgtggccaccagccgggcactgtggcacggct-----------gagt-ggatgtgt-aaagtGGGCATCACGGACTGGGAGAGGACAC--GGGCCTCAGCCAGGGGC------CTGCAGCAGGAATGAGCTGACTCAGCGGTGCAGGCCCAGAACGCCCTGACTGGTGTCC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95648540 318 + 96509753 tcttgagaaaaatctcctt-tcttctggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgagg---cccccccccatggcggagagtcactagcttcacttgaag-tccgctgagctaagtgt---tcccaccag-aaaacacctgcacagcagcatcgaggcaggtgcgtggccaccagccgggcactgtggcacggct-----------gagt-ggatgtgt-aaagtGGGCATCACGGACTGGGAGAGGACAC--GGGCCTCAGCCAGGGGC------CTGCAGCAGGAATGAGCTGACTCAGCGGTGCAGGCCCAGAACGCCCTGACTGGTGTCC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16099599 321 - 16982598 tcttgagaaaaatctcctt-tcttctggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgaggccccccccccccatggcggagagtcactagcttcacttgaag-tccgctgagctaagtgt---tcccaccag-aaaacacctgcacagcagcatcgaggcaggtgcgtggccaccagccgggcactgtggcacggct-----------gagt-ggacgcat-aaagtGGGCATCACGGACTGGGAGAGGACAC--GGGCCTCAGCCAGGGGC------CTGCAGCAGGAATGGGCTGACTCAGCGGTGCAGGCCCAGAACGCCCTGACTGGCGTCC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2947980 305 - 3785965 tcttgagaaaagtctcttt-tcttctggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgagg---ctcacccccatggcg--gagtcactagcttcacttgaag-tccgctgagctaagtgt---tcccaccag-aaaacagctgcacagcagcatcgaggcaggtgcgtggccaccagccgggca-----------cT-----------GAGT-GGATGCAT-AAAGTGGGCATCACGGGCTGGGAGAGGACAC--GGGCCTCAGCCAGGGGC------CTGCAGCAGGAATGGGCTGACTCAGCAGTGCAGGCCCAGAACGCCCTGACTGGTGTCC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89615739 315 - 90373283 tcttgagaaaagtctcttt-tcttctggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgagg---cccacccccatggcggagagtcactagcttcacttgaag-tccgctgagctaagtgt---tcccaccag-aaaacacctgcacagcagca---aggcaggtgcgtggccgccagccgggcactgtggcacggct-----------gagt-ggatgcat-aaagtgggcatcacaGGCTGGGAGAGGACAC--GGGCCTCCGCCAGAGGC------CTGCAGCAGGAACGGGCTGACTCAGCGGTGCAGGCCCAGAACACCCTGACTGGTGTCC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499042 305 + 6149316 tcttgagaaaaatctcttt-tcttctggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgagg---ctcacccccatggc--agagtcactagcttcacttgaag-tccgctgagctaagtgt---tcccaccag-aaaacacctgcacagcagcatcgaggcaggtgcgtggccaccagccgggca-----------cT-----------GAGT-GGATGCAT-AAAGTGGGCATCACGGGCTGGGAGAGGACAC--GGGCCTCAGCCAGGGGC------CTGCAGCAGGAATGGGCTGACTCAGCAGTGCAGGCCCAGAATGCCCTGACTGGTGTCC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4726943 316 - 5823884 tcttgagaaaaatcccttt-tcttccggaaacctcag--tttctgc-tctcaaggcctcagctgctgggacgagg---cccacccccatggcg--gagtcactagcttcacttgaag-tccactgaactaagtgt---tcctgccag-aacacacctgcacagcagcatcgaggcaggtgcgtggccaccagccaggcactgtggcatggct-----------gagc-ggatgcat-aaagtGGGCATCACGGGCTGGGAGAGGACAC--GGGCCTCAGCCAGAGGC------CTGCAGCAGGAACGGGCTGACTCAGCTGTGCAGGCCCAGAACGCCCTGACTGGTGTCC- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437142 332 + 159171411 tcttgaggaaggttccctg-tcttccagaaaccttcagttcttttcttttttaggctgcagctgcaggaacaagg---cccacccccaaggtggaggttcactggcttaactcaaaattctgctgaactaagtgtccatcaagctggaaaatttcttgcacagca-catcgaggcagatgtgtggtcgccagccgggccccgtggcgcagcc-----------caggcgaatgtat-aaaatgaccaccacaGGCCATCAGAGGACACAGGGCCCTCGGCCAGAGGCCTGGC-CTGTGGCGGG-ACGGGCTGATTTGTCCGTGCAGGCACAGAACGCCCTCACTGGCGTCT- i calJac3.chr5 I 787 I 1 s saiBol1.JH378156 15554463 312 + 16356641 cctcgaggagagctcgctt-tcttccagaagcctctg--tcttttc-tctctaggcctcagctgccgggacgagg---ccca-ccccagggcggagggtcactggcctgactcaacg-tctgctgacctaagcgcccgtcacgccgg-aactcacctgcacagcagcatcgaggcAGCTGTGTGGTCGCCAGCGCGGCCC----GCG---------------------GGATGTGT-AAGACGGCCACC-CAGGGTGGAAGAGGACACGGGGCCGTCGGCCAGAGGCCTGGC-CTGCGGCGGG-ACGGGCTGATTCGGCGGTGCGGGCACAGAACGCCCTCACTGGCGTCC- i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 401121 325 + 1231380 tcttgaggagagtttgctt-tcttccagaaacctcag--tcttttc-tctctaggcctcagctgccagaacgagg---ccca-ccccaaggcggagggtcactggcctaactcaaaa-tctgctgacctatgtgtccatcacgctgg-aaaacacctgcacagcagcatcgaggcagatgagtggtcgccagccgggccccgtggcgcggcc-----------aagt-ggatgtat-aaaatgaccatcacGGGACGGAAGAGGACACAGGGCCCTCGGCCAGAGGCC-GGC-CTGCGGCAGG-ACGGGCTGATTCGGCGGTGCAGGCACGCAACGCCCTCACTGGCGCCC- i cebCap1.NW_016107870v1 C 0 I 1 s otoGar3.GL873542 22175981 232 + 22939663 ------GGAGAGTCCCTTTATCTGTCACAAACCT--G--TCTTTGC-TCCTAAGGCCTCAGCTG-TGGAAGGCCG---CCTGCCCT------------------------------G-TCC----------ATGT----------AG-GAAATGCCTGCA-GGTAGGCTCCAGTCAGGGGTCTGGCCA--AGCCCAGGC--------CAGCC-----------CAGG-TGACACATGAAACTGACCATCACAAGCAAGGAGAGGACTAAGGGGCTTGGGC---GTGC------CAACAG--GGAACAAGCTGACTTAGCGGTTGAGGCACAGA------------------- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1961227 1044 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I a score=703097.000000 s hg38.chr20_KI270871v1_alt 40266 83 + 58661 AGGACAGTGGTGGGGAGAGCCAGGTCTCTCGCCGGCAGCTCGGCTCCAGGGCAGGTCCAGGCCACACACCTGCCCAGGACCCC s panTro5.chr20 65615986 83 + 66533130 AGGACAGTGGTGGGGAGAGCCAGGTCTCTCGCCGGCAGCTCGGCTCCAGGGCAGGTCCAGGCCACACATCCGCCCAGGACCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376221 83 + 62195757 AGGACAGTGGTGGGGAGAGCCAGGTCTCTCGCCGGCAGCTCGGCTCCAGGGCAGGTCCAGGCCACACATCCGCCCAGGACCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790768 83 - 1017659 AGGACAGTGGTGGGGAGAGCCAGGTCTCTCGCCAGCAGCTCGGCTCCAGGGCAGGTCCAGGCCACACACCCGCCCAGGACCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279570 83 - 110113093 AGGGCAGTGGTGGGGAGAGCCAGGTCTCTCGCCGGCAGCTCGGCTCCAGGGCAGGTCCAGGCAACACACGCGCCCAGGACCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999602 83 - 92844088 AGGACAGTGGTGGGCAGAGCCAGGTCTCTCACCGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCAGCCCAGGACCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95648858 83 + 96509753 AGGACAGTGGTGGGCAGAGCCAGGTCTCTCACCGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCAGCCCAGGACCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16099920 83 - 16982598 AGGACAGTGGTGGGCAGAGCCAGGTCTCTCACCGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCAGCCCAGGACCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948285 83 - 3785965 AAGACAGTGGTGGGCAGACCCAGGTCTCTCACCGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCCGCCCAGGACCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616054 83 - 90373283 AGGACAGTGGTGGGCAGACCCAGGTCTCTCACTGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCCGCCCAGGACCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499347 83 + 6149316 AGGACAGCGGTGGGCAGACCCAGGTCACTCACCGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCCGCCCAGGACCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727259 83 - 5823884 AGGACAGTGGTGGGCAGAGCCAGGTCCCTAGCCGGAAGCTCAGCTCCAGGGCAGGTCCAGGCCACACACCCGCCCCGGACCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437475 77 + 159171411 AGGACAGTCATGGGGAGACCC-GGTCTCCTGCCTG-----CGGATTCAGGGCAGGTCCAGGCCACGCATCTGCCCAAATCCCC i calJac3.chr5 I 1 I 1 s saiBol1.JH378156 15554776 69 + 16356641 AGGACAGTCGTGGGGAGACCCGGGTCTCCTGCCCG-----CGGCTCCAGGGCAGGTCCAGGCCACGCGCCCG---------CC i saiBol1.JH378156 I 1 I 1 s cebCap1.NW_016107870v1 401447 78 + 1231380 AGGACAGTTGTGGGGAGACCCAGGTCTCCTGCCCG-----CGGCTCCAGGGCAGGTCCAGGCCACACGTCCGCCCAGGTCCCC i cebCap1.NW_016107870v1 I 1 I 1 s aotNan1.NW_018500483v1 1962271 78 + 11732439 AGGACAGTTGTGGGGAGACCCAGGTCTCCCGCCCG-----CGGCTCCAGGGCAGATCCAGGCCACACGTCCGCCCAGGTCCCC i aotNan1.NW_018500483v1 I 1044 I 11 s otoGar3.GL873542 22176213 25 + 22939663 -----------------------------------------------------TGCCTAGACCAC-----TGTCCAGCACCCT i otoGar3.GL873542 C 0 I 2 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=161618.000000 s hg38.chr20_KI270871v1_alt 40349 29 + 58661 ACCAGCTGGCCTGCAGCCACAG-AGAGAGG s panTro5.chr20 65616069 29 + 66533130 ACCAGCTGGCCTGCAGCCACAG-AGAGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376304 29 + 62195757 ACCAGCTGGCCTGCAGCCACAG-AGAGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790851 29 - 1017659 ACCAGCTGGCCTGCAGCCACAG-AGAGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279653 29 - 110113093 ACCAGCCAGCCTGCAGCCGCAG-AGAGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999685 29 - 92844088 ACCAGCCGGCCTGCAGCCACAG-AGGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95648941 29 + 96509753 ACCAGCCGGCCTGCAGCCACAG-AGATAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100003 29 - 16982598 ACCAGCCGGCCTGCAGCCACAG-AGAGAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948368 29 - 3785965 ACCAGCCGGCCTGCAGCCGCAG-AGAGAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616137 29 - 90373283 ACCAGCCGGCCTGCAGCCGCAG-AGAGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499430 29 + 6149316 ACCAGCCGGCCTGCAGCCGCAG-AGAGAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727342 29 - 5823884 ACCAGCCGGCCTGCAGCCGCAG-AGAGAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437553 10 + 159171411 ACCGGCCAGC-------------------- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15554846 10 + 16356641 ACCGGCCGGC-------------------- i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 401526 10 + 1231380 ACCGGCCGGC-------------------- i cebCap1.NW_016107870v1 I 1 C 0 s otoGar3.GL873542 22176240 30 + 22939663 GCCACCAGGCCCACACCTGCAGCAGAAAGG i otoGar3.GL873542 I 2 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1962349 11 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I a score=855700.000000 s hg38.chr20_KI270871v1_alt 40378 92 + 58661 CCCCACCGGGACCCTCCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCCAGAATGCCTCAGCCCGGGACGACGCGCCAGCCGGAGC-TCCA s panTro5.chr20 65616098 92 + 66533130 CCCCACCGGGACCCTCCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCCAGAATGCCTCAGCCCGGGACGACGCGCCAGCCGGAGC-TCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376333 92 + 62195757 CCCCACCGGGACCCTCCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCCAGAATGCCTCAGCCCGGGACGACGCGCCAGCCGGAGC-TCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790880 92 - 1017659 CCCCACCAGGACCCTCCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCCAGAATGCCTCAGCCCGGGACGACGCGCCAGCCGGAGC-TCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279682 92 - 110113093 CCCCACCAGGACCCGCCCCGTGGGAACCGGGAACCTCCACACAGGCCAGCCGGAACACCTCGGCCCGGGACGAAACGCCAGCCAGAGC-TCCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999714 92 - 92844088 CCCCACCGGGACCCACCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCGAGAACGCCTCAGCCCAGGACGACAGGCCAGCCGGAGC-TCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95648970 92 + 96509753 CCCCACCGGGACCCACCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCGAGAACGCCTCAGCCCAGGACGACAGGCCAGCCGGAGC-TCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100032 92 - 16982598 CCCCACCGGGACCCACCTCGTGGGAACCGGGAGCCTCCACACAGGCCAGCGAGAACGCCTCAGCCCGGGACGACAGGCCAGCCGGAGC-TCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948397 92 - 3785965 CCCCACCGGGACCCACCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCGAGAACGCCTCAGCCCAGGACGACAGGCCAGCCGGAGC-TCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616166 92 - 90373283 CCCCACCAGGACCCACCTCGTGGGAACTGGGAGCCTGCACACAGGCCAGCGAGAACGCCTCAGCCCAGGATGACAGGCCAGCCGGAGC-TCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499459 92 + 6149316 CCCCACTGGGACCCACCTCGTGGGAACTGGGAGCCTCCACACAGGCCAGCGAGAACGCCTCAGCCCAGGACGACAGGCCAGCCGGAGC-TCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727371 92 - 5823884 CCCCACCGGGACCTGCCTCATGGGAACTGGGAGCCTCCACGCAGGCCAGCGAGAACGCCTCAGCCCAGGACGACAGGCcagccggagc-tgca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437563 91 + 159171411 CCCCACCGGGACCTGCCTCGTGGGAACCAGGAGCCTCCCCGCAGA-CAGAGAGGACGCCTCGTTCCAGGGTGACATGCCAGCCGGAGC-TCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15554856 90 + 16356641 CCCCACCGGGACCCACCTCTTGGGAACCGGGAGCCTCCCCGAAGA-CAGCGAGGACGCCTCGGCCCGGGGCGACATGCCAG-TGGCGC-TCCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 401536 91 + 1231380 CCACACCGGGACCCACCTCGTGGGAACCGGGAGCCTCCCCGCAGA-CAGCGAGGACGCCTCGGCCCAGGGTGACATGCCAGCGGGAAC-TCCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1962360 91 + 11732439 CCCCACCGAGACACGCCTCGTGGGAACCGGGAGCCTCCCCACAGA-CAGCGAGGACGCCTCGGCCCAGGGCGACCTGCCAGCCGGAGC-TCCA i aotNan1.NW_018500483v1 I 11 C 0 s otoGar3.GL873542 22176270 62 + 22939663 -CACAGCAGAGTTCA---------------GTGCCTCAGTGCAGGCAA---AGGACACA------------GACATGCCAGCCAGAGCATCCA i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 118407 2686 + 555560 I e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=970177.000000 s hg38.chr20_KI270871v1_alt 40470 117 + 58661 GCTGCAGGGGCAGGGGTT-----GGGGCGGGGGCTTCCAGGAAGAATAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCTAGTGAGAAGCTCAAAGCGCAGCACCGCGTGTGGAGGCCGGG s panTro5.chr20 65616190 117 + 66533130 GCTGCAGGGGCAGGGGTT-----GGGGCGGGGGCTTCCAGGAAGAATAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCTCGTGAGAAGCTCGAAGCACAGCACCGCGTGTGGAGGCCGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376425 117 + 62195757 GCTGCAGGGGCAGGGGTT-----GGGGCGGGGGCTTCCAGGAAGAATAGTCCCTGCAGGCTGAGGGGAG-------------GTTCCAGGGCCTCGTGAGAAGCTCGAAGCGCAGCACCGCTTGTGGAGGCCGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 790972 117 - 1017659 GCTGCAGGGGCAGGGGTT-----GGGGCGGGGGCTTCCAGGAAGAATAGTCCCTGCAGGCTGAGGGGAG-------------GGCCCAGGGCCTCATGAGAAGCTCGAAGCGCAGCACCGCGTGTGGAGGCCGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279774 117 - 110113093 GCTGCAGGGGCAGGGGTT-----GGGGCGGGGGCTTCCAGGAAGAAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCGCATGAGAAGCTCGAAGTGCAGCACCGCGTGTGGAAGCTGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999806 119 - 92844088 GCTGCAGGGGCAGAGGCGGG---GGGGCAGGGGCCTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCGCATGAGAAGCTCGAAGTGCAGCACCGCGTGTGGAGGCCGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649062 119 + 96509753 GCTGCAGGGGCAGAGGCGGG---GGGGCAGGGGCCTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCGCATGAGAAGCTCGAAGTGCAGCACCGCGTGTGGAGGCCGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100124 118 - 16982598 GCTGCAGGGGCAGAGGCGGG---GGGGCAGGGGCCTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCGCATGAGAAGCTCGAAGTGCAGCACCGCGTGTGGA-GCCGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948489 119 - 3785965 GCTGCAGGGGCAGAAGCGGG---GGGGCAGGGGCCTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCGCATGAGAAGCTCGAAGTGCAGCACCGCGTGTGGAGGCCGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616258 119 - 90373283 GCTGCAGGGGCAGAGGCGGG---GGTGCAGAGGCTTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCGGAGCCGCATGAGAAGTTCGAAGTGCAGCACCGCGTGTGGAGGCCGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499551 119 + 6149316 GCTGCAGGGGCAGAGGCGGG---GGGGCAGGGGCCTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCACATGAGAAGCTCGAAGTGCAGCACCGCGTGTGGAGGCTGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727463 122 - 5823884 gctgcaggggcagaggcaggggtggggcgggggcTTCCAGGAAGCAGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGGCCACATGAGAAGCTCCAAGTGCAGCACCGCGTGTGGAGGACGCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437654 105 + 159171411 GCCGCAGGGGCAGGGGTT-----GGGGCGGGGGC----------AGGAGTCCCTGCAGGCT--GGAGAG-------------GGTCCAGGACTGGGTGAGAAGCTCAAAGCACAGCGCTGCACGTGGAGGCCGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15554946 105 + 16356641 GCCGCAGGGGCAGGGGTC-----GGGGT-GCGGC----------AGGAGCCCCT-CAGGCTGAGGGGCG-------------GGTCCGGGACTGTGCGGGGAGCTCGAAGCACACTGCTGCACGCGGAGGCCGGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 401627 106 + 1231380 GCCGCAGGGGCAGGGGTC-----GGGGAGCGGGC----------AGGAGTCCCT-CAGGCTGAGGGGAG-------------GGTCCAGGGCTGTGTGAGAAGGTCGAACCACAGCACTGCATGTGGAGGCCAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1962451 107 + 11732439 GCCGCAGGGGCAGGCGTC-----GGGGCGGGGGC----------AGGAGTCCCTGCAGGCTGAGGGGAG-------------GGTCCAGGACTGCGTGAGAAACACGAAGCACAGCGCTGCACGTGGAGGCCGGG i aotNan1.NW_018500483v1 C 0 I 28 s otoGar3.GL873542 22176332 84 + 22939663 GCCACAG----------------TGGACAG------------------GTCCCTGAAGGCCAGGGTAAA-------------GGTGTTGG-CCACATGAGA---TCCTGAGGCATGACAGTGTTTGGAAGCCAGG i otoGar3.GL873542 C 0 I 27 s dasNov3.JH567899 121093 116 + 555560 GCCCCAGGGGAAGAGGCC-----TGGGGGGAGGC--CTGGTGGGGAGAGGCCCCACGTGCCTCCTGCAGCCCTCGCCCCAGCTCCCCAGGTCCTCACG-----CTCAGAGGCAAGCCCCTCG-------GCCGGG i dasNov3.JH567899 I 2686 C 0 e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=-2655.000000 s hg38.chr20_KI270871v1_alt 40587 1 + 58661 -T s panTro5.chr20 65616307 1 + 66533130 -T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376542 1 + 62195757 -T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791089 1 - 1017659 -T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279891 1 - 110113093 -C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999925 1 - 92844088 -C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649181 1 + 96509753 -C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100242 1 - 16982598 -C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948608 1 - 3785965 -C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616377 1 - 90373283 -C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499670 1 + 6149316 -C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727585 1 - 5823884 -C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437759 1 + 159171411 -C i calJac3.chr5 C 0 I 27 s saiBol1.JH378156 15555051 1 + 16356641 -C i saiBol1.JH378156 C 0 I 26 s cebCap1.NW_016107870v1 401733 1 + 1231380 -C i cebCap1.NW_016107870v1 C 0 I 27 s otoGar3.GL873542 22176443 1 + 22939663 -T i otoGar3.GL873542 I 27 C 0 s dasNov3.JH567899 121209 1 + 555560 G- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1962558 28 + 11732439 I e canFam3.chr24 47089110 537 + 47698779 I a score=476229.000000 s hg38.chr20_KI270871v1_alt 40588 50 + 58661 GGGTCCAAGAGCCAGA---GCCT-GCCCC--ACGCTGCA----CCCCT-CC-CCGCCACCCC s panTro5.chr20 65616308 50 + 66533130 GGGTCCAAGAGCCAGA---GCCT-GCCCC--ACGCTGCA----ACCCT-CC-CCGCCACCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376543 50 + 62195757 GGGTCCAAGAGCCAGA---GCCT-GCCCC--ACGCTGCA----ACCCT-CC-CCGCCACCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791090 50 - 1017659 GGGTCCAAGAGCCAGA---GCCT-GCCCC--ACACTGCA----CCCCT-CC-CCGCCACCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279892 50 - 110113093 GGGTCCAAGAGCCAGC---GCCT-GCCCC--ACGCTGCA----CCCCT-CC-CCGCCACCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999926 50 - 92844088 GGGTCCAAGAGCCAGC---GCCC-GTCCC--TCGCTGCA----CCCCT-CC-CCGCCACTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649182 50 + 96509753 GGGTCCAAGAGCCAGC---GCCC-GTCCC--TCGCTGCA----CCCCT-CC-CCGCCACTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100243 50 - 16982598 GGGTCCAAGAGCCAGC---GCCC-GTCCC--TCGCTGCA----CCCCT-CC-CCGCCACTCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948609 50 - 3785965 GGGTCCAAGAGCCAGC---GCCA-GTCCC--TCGCTGCA----CCCCT-CC-CCGCCACTCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616378 50 - 90373283 GGGTCCAAGAGCCAGC---GCCC-GTCCC--TCGCTGCA----CCCCT-CC-CCGCCACTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499671 50 + 6149316 GGGTCCAAGAGCCAGC---GCCC-GTCCC--TCGTTGCA----CCCCT-CC-CCGCCACTCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727586 51 - 5823884 GGGTCCAAGAGCCAGC---GCCC-GTCCC--TCCCTGCAC---CCCCC-CC-CCGCCCCTCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437787 52 + 159171411 -GGTCCAAGAGCCAGT---GCCT-GCCCCCGCCGATGCA----CCCCCGCA-CTGCCACCCC i calJac3.chr5 I 27 C 0 s saiBol1.JH378156 15555078 49 + 16356641 AGGTCCAAGAGCCAGC---GCCT-GCCC---CCCATGCA----CCCCT-CA-CCGCCACCCC i saiBol1.JH378156 I 26 C 0 s cebCap1.NW_016107870v1 401761 50 + 1231380 AGGTCCAAGAGCCAGC---GCCT-GCCCC--CCGATGCA----CCCCT-CA-CCGCCACCCC i cebCap1.NW_016107870v1 I 27 I 163 s aotNan1.NW_018500483v1 1962586 50 + 11732439 GGGTCCAAGAGCCAGC---ACCT-GCCCC--CCAATGCA----CCCCT-CA-CCGCCACCCC i aotNan1.NW_018500483v1 I 28 C 0 s otoGar3.GL873542 22176444 52 + 22939663 GGGTCTAAGAGCAGGC---ACCTGGCCCC--ATGCTGTG----CCCCT-CCTCTATCACCCT i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 121210 53 + 555560 GTGCCTAAAAACCCCCTCTGCAG-GCCCCA-ACACCGCACAGGCCCCA-CC-CCATC----- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181114885 3866 + 182113224 I e canFam3.chr24 47089110 537 + 47698779 I a score=27566.000000 s hg38.chr20_KI270871v1_alt 40638 3 + 58661 CAA s panTro5.chr20 65616358 3 + 66533130 CAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376593 3 + 62195757 CAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791140 3 - 1017659 CAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279942 3 - 110113093 CAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999976 3 - 92844088 CAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649232 3 + 96509753 CAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100293 3 - 16982598 CAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948659 3 - 3785965 CAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616428 3 - 90373283 CAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499721 3 + 6149316 CAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727637 3 - 5823884 CAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437839 3 + 159171411 TGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555127 3 + 16356641 CAA i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1962636 3 + 11732439 CAA i aotNan1.NW_018500483v1 C 0 I 110 s otoGar3.GL873542 22176496 3 + 22939663 GAA i otoGar3.GL873542 C 0 I 18 s dasNov3.JH567899 121263 3 + 555560 CAC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181114885 3866 + 182113224 I e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=109846.000000 s hg38.chr20_KI270871v1_alt 40641 16 + 58661 GAC----CACAAGCCACAGC s panTro5.chr20 65616361 16 + 66533130 GAC----CACAAGCCACAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376596 16 + 62195757 GAC----CACAAGCCACAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791143 16 - 1017659 GAC----CACAAGCCACAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279945 16 - 110113093 GAC----CACAAGCCACAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999979 16 - 92844088 GAC----CACAACCCACAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649235 16 + 96509753 GAC----CACAACCCACAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100296 16 - 16982598 GAC----CACAACCCACAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948662 16 - 3785965 GAC----CACAACCCACAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616431 16 - 90373283 GAC----CACAACCCACAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499724 16 + 6149316 GAC----CACAACCCACAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4727640 16 - 5823884 GAC----CACAACCCACAGC i colAng1.NW_012114444v1 C 0 I 344 s calJac3.chr5 57437842 16 + 159171411 AAC----CACGAGCTGCCGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555130 16 + 16356641 AAC----CACGAGCTGCCGC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22176517 20 + 22939663 GACCCTTCAGGGGCCAATGC i otoGar3.GL873542 I 18 I 3 s dasNov3.JH567899 121266 11 + 555560 ACC----CACAATCT----- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1962639 110 + 11732439 I e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=261290.000000 s hg38.chr20_KI270871v1_alt 40657 45 + 58661 CAGGTC----------------------------------CTGCCCTATCCAGCTGCCGCCCCGCGGTGGACGTCGGCA-------------- s panTro5.chr20 65616377 45 + 66533130 CAGGTC----------------------------------CTGCCCTATCCAGCTGCCGCCCCGCGGTGGACGTCGGCA-------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376612 45 + 62195757 CAGGTC----------------------------------CTGCCCTATCCAGCTGCCGCCCCGCGGTGGACATCGGCA-------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791159 45 - 1017659 CGGGTC----------------------------------CTGCCCTATCCAGCTGCCGCCCCACGGTGGACATCGGCA-------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109279961 45 - 110113093 CGGGCC----------------------------------CTGCCCTATCCAGCTGCCGCCCCGCAGTGGACATCAGCA-------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 91999995 45 - 92844088 CTGGTC----------------------------------CTGCCCTGCCCAGGGGCCGTCCCGCAGCGGACATCGGCA-------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649251 45 + 96509753 CTGGTC----------------------------------CTGCCCTGCCCAGGGGCCGTCCCGCAGCGGACGTCGGCA-------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100312 45 - 16982598 CTGGTC----------------------------------CTGCCCTGCCCAGGGGCCGCCCCGCAGCGGACGTCGGCA-------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948678 45 - 3785965 CTGGTC----------------------------------CTGCCCTGCCCAGGGGCCGCCCGGCAGCGGACATCGGCA-------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616447 45 - 90373283 CTGGTC----------------------------------CTGCCCTGCCCAGGGGCCGCCCCGCAGCGGACATCGGCA-------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499740 45 + 6149316 CTGGTC----------------------------------CTGCCCTGCCCAGGGGCCGCCCCGCAGCAGACATTGGCA-------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4728000 45 - 5823884 CTGGTC----------------------------------CTGCCCTATCCAGCTGCCGCCCCACAGTGGACACCGGCA-------------- i colAng1.NW_012114444v1 I 344 C 0 s calJac3.chr5 57437858 43 + 159171411 -CCATC----------------------------------CTGCCCTATCCGGCTACCA-CCCGTTGTGGACGTGGGCG-------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555146 43 + 16356641 -CCGTC----------------------------------CCGCCCTATCCGGCTGCCA-CCCGTCGTGGACGTGGGCG-------------- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22176540 78 + 22939663 CAGGTCTGGCCACAGTGATGGCCAACTCCAGCCCCAGCTGCTGCCCTGTGCA-CAGCTGTCCAGCAGCAAGTATTGACA-------------- i otoGar3.GL873542 I 3 C 0 s dasNov3.JH567899 121277 51 + 555560 ---GGC----------------------------------CGGCACATTCCAGCTGCGG-----CGGCGGGTGGAAGCGCCGTCCAAGAGCCG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181114885 3866 + 182113224 I e aotNan1.NW_018500483v1 1962639 110 + 11732439 I e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=219627.000000 s hg38.chr20_KI270871v1_alt 40702 31 + 58661 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA s panTro5.chr20 65616422 31 + 66533130 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376657 31 + 62195757 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791204 31 - 1017659 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280006 31 - 110113093 CAGCAGCACCAGGAAGGTCCTGTGTTGG--------GCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000040 31 - 92844088 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649296 31 + 96509753 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100357 31 - 16982598 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948723 31 - 3785965 CAGCAGCACCAGGAAGGCCCTGTGTCAG--------GCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616492 31 - 90373283 CAGCAGCACCAGGAAGGCCCTGTGTCGG--------GCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499785 31 + 6149316 CAGCAGCACCAGGAAGGCCCTGTGTCAG--------GCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4728045 31 - 5823884 CAGCAGCACCAGGAAGGCTCTGTGTCGG--------GCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437901 32 + 159171411 AAGCAGCACCAGGAACGCCCTGCCTCGGC-------GTA i calJac3.chr5 C 0 I 19 s saiBol1.JH378156 15555189 32 + 16356641 AAGCAGCACCAGGAACGCCCTGCGTCGGC-------GGA i saiBol1.JH378156 C 0 I 19 s otoGar3.GL873542 22176618 37 + 22939663 CACCAGCACCAAGAA--TTCTAAGGAGACAAAAACAGCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181118751 26 + 182113224 CAGCAGCATTGAGAGAG-CATCTGTCA------------ i mm10.chr2 I 3866 C 0 s dasNov3.JH567899 121328 26 + 555560 CTGCGGGCCTCAGAGCTCCCTGCAGC------------- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1962639 110 + 11732439 I e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=125897.000000 s hg38.chr20_KI270871v1_alt 40733 16 + 58661 CCCCAGGAGACACCAG---- s panTro5.chr20 65616453 16 + 66533130 CCCCAGGAGACACCAG---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376688 16 + 62195757 CCCCAGGAGACACCAG---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791235 16 - 1017659 CCCCAGGAGACACCAG---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280037 16 - 110113093 CCCCAGGAGACAGCGG---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000071 16 - 92844088 CCCCAGGAGACACCAG---- i rheMac8.chr10 C 0 I 103 s macFas5.chr10 95649327 16 + 96509753 CCCCAGGAGACACCAG---- i macFas5.chr10 C 0 I 17 s macNem1.NW_012014244v1 16100388 16 - 16982598 CCCCAGGAGACACCAG---- i macNem1.NW_012014244v1 C 0 I 103 s cerAty1.NW_012001373v1 2948754 16 - 3785965 CCCCAGGAGACACCAG---- i cerAty1.NW_012001373v1 C 0 I 103 s chlSab2.chr2 89616523 16 - 90373283 CCCCAGGAGACACCAG---- i chlSab2.chr2 C 0 I 103 s manLeu1.NW_012104365v1 5499816 16 + 6149316 CCCCAGGAGACACCAG---- i manLeu1.NW_012104365v1 C 0 I 103 s colAng1.NW_012114444v1 4728076 16 - 5823884 CCCCAGGAAACACTGG---- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437952 16 + 159171411 CCCTAGGAGACAAGGG---- i calJac3.chr5 I 19 C 0 s saiBol1.JH378156 15555240 16 + 16356641 CCCCAGGAGACAAGGG---- i saiBol1.JH378156 I 19 C 0 s aotNan1.NW_018500483v1 1962749 16 + 11732439 CCCCAGGAGACAAGGG---- i aotNan1.NW_018500483v1 I 110 C 0 s otoGar3.GL873542 22176655 12 + 22939663 TCC----AGACACTCA---- i otoGar3.GL873542 C 0 I 3 s mm10.chr2 181118777 13 + 182113224 --CCAGGGTTctcag----- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 121354 20 + 555560 CCCCAGAGAAAACCGCGAGG i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=18643.000000 s hg38.chr20_KI270871v1_alt 40749 6 + 58661 TCCTCC-- s panTro5.chr20 65616469 6 + 66533130 TCCTCC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376704 6 + 62195757 TCCTCC-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791251 6 - 1017659 TCCTCC-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280053 6 - 110113093 TCCTCC-- i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95649360 6 + 96509753 TCCTGC-- i macFas5.chr10 I 17 I 80 s calJac3.chr5 57437968 6 + 159171411 TCCTCC-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555256 6 + 16356641 TCCTCC-- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1962765 6 + 11732439 Tcctcc-- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22176670 6 + 22939663 TCCCCT-- i otoGar3.GL873542 I 3 C 0 s mm10.chr2 181118790 5 + 182113224 -cctca-- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 121374 8 + 555560 GCCTGACG i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I e manLeu1.NW_012104365v1 5499832 103 + 6149316 I e colAng1.NW_012114444v1 4728092 0 - 5823884 C e chlSab2.chr2 89616539 103 - 90373283 I e cerAty1.NW_012001373v1 2948770 103 - 3785965 I e macNem1.NW_012014244v1 16100404 103 - 16982598 I e rheMac8.chr10 92000087 103 - 92844088 I a score=234172.000000 s hg38.chr20_KI270871v1_alt 40755 32 + 58661 GCCCGCCGCCAC--AG------GCCCA---CGGCTTCCAGCTC s panTro5.chr20 65616475 32 + 66533130 GCCCGCCGCCAC--AG------GCCCA---CGGCTTCCAGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376710 32 + 62195757 GCCCGCCGCCAC--AG------GCCCA---CGGCTTCCAGCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791257 32 - 1017659 GCCCGCCGCCAC--AG------GCCCA---TGGCTTCCAGCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280059 32 - 110113093 GCCCGCCCCCAC--AG------GCCCA---TGGCTTCCAGCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000190 32 - 92844088 GACGGCCCCCAC--AG------GCCCA---CAGCTTCCAGCTC i rheMac8.chr10 I 103 C 0 s macFas5.chr10 95649446 32 + 96509753 GACTGCCCCCAC--AG------GCCCA---CAGCTTCCAGCTC i macFas5.chr10 I 80 C 0 s macNem1.NW_012014244v1 16100507 32 - 16982598 GACTGCCCCCAC--AG------GCCCA---CAGCTTCCAGCTC i macNem1.NW_012014244v1 I 103 C 0 s cerAty1.NW_012001373v1 2948873 32 - 3785965 GACTGCCCCCAC--AG------GCCCA---CAGCTTCCAGCTC i cerAty1.NW_012001373v1 I 103 C 0 s chlSab2.chr2 89616642 32 - 90373283 GACTGCCCCCAC--AG------GCCCA---CAGCTTCCAGCTC i chlSab2.chr2 I 103 C 0 s manLeu1.NW_012104365v1 5499935 32 + 6149316 GACTGCCCCCAC--AG------GCCCA---CAGCTTCCAGCTC i manLeu1.NW_012104365v1 I 103 C 0 s colAng1.NW_012114444v1 4728092 30 - 5823884 --CTGCCCTCAC--AG------GCCCA---CAGCTTCCAGCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57437974 31 + 159171411 TCCCGCCTCTAC--AA------GCCC----CAGCCTCCAGCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555262 31 + 16356641 TCCCGCCCCCAC--GA------GCCC----CAGCCTCCAGCAG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1962771 31 + 11732439 tcccgccccctc--aa------gccc----cagcctccagcAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22176676 32 + 22939663 --ATGCCTCCCCTGAG------GCTGA---CAGCTCCCAGCTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181118795 32 + 182113224 -gcctcagcctc--ag------cctcagccAAACCTCCAAC-- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 121382 32 + 555560 ------GCCCAC--AAGACCCCGCTCA---AGCCTTCCAGTGC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 401811 163 + 1231380 I e canFam3.chr24 47089110 537 + 47698779 I a score=3956251.000000 s hg38.chr20_KI270871v1_alt 40787 412 + 58661 -GAAG------------GCACTGGCCCTGAG----GCACCGTCGCCAGGGGGCACTCGGCCCCG---CCCACGTGTG----CGACCCAGAGG-----CCTCCGCCAGGACCCCGAAGCTCCCGGCTCCAG-GCAGGGG-CGCTGGCAGTGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCATACGCAAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCTGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-TGCGCAGA---------CATCTCGTGCGCCTTCTGCGGGCGATCCTCTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGAACTC--TCAGCGGGGTAGGA--G----CAGGGGAGGACGCGGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCAGA---GGCTTGGGAGGCAGGAGGGGCGCCGCGGGGACACAGAGGGCATCACACATC s panTro5.chr20 65616507 412 + 66533130 -GAAG------------GCACTGGCCCTGAG----GCACCGTCGCCAGGGGGCACTCGGCCCCG---CCCACGTGTG----CGACCCAGAGG-----CCTCCGCCAGGACCCCGAAGCTCCCGGCTCCAG-GCGGGGG-CGCTGGCAGCGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AC-GTCC----CATTTCCAAGCCACGATTAATTTCCTGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-TGCGCAGA---------CATCTCGTGCGCCTTCTGCGGGCGATCCTCTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGAACTC--TCAGCGGGGTGGGA--G----CAGGGGAGGACGCAGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCAGA---GGCTTGGAAGGCAGGAGGGGCGCCGCGGGGACACAGAGGGCATCACACATC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61376742 412 + 62195757 -GAAG------------GCACTGGCCCTGAG----GCACCGTCGCCAGGGGGCACTCGGCCCCG---CCCACGTGTG----CGACCCAGAGG-----CCTCCGCCAGGACCCCGAAGCTCCCGGCTCCAG-GCGGGGG-CGCTGGCAGCGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AC-GTCC----CATTTCCAAGCCACGATTAATTTCCTGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-TGCGCAGA---------CATCTCGTGCGCCTTCTGCGGGCGATCCTCTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGAACTC--TCAGCGGGGTGGGA--G----CAGGGGAGGACGCAGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCAGA---GGCTTGGAAGGCAGGAGGGGCGCCGCGGGGACACAGAGGGCATCACACATC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791289 412 - 1017659 -GAAG------------GCACTGGCCCTGAG----GCACCGTCGCCAGGGGGCACTCGGTCCCG---CCCACGTGTG----CGACCCAGAGG-----CCTCCGCCAGGACCCCGAAGCTCCCGGCTCCAG-GCAGGGG-CGCTGGCAGCGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCTGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-TGCGCAGA---------CATCTCGTGCGCCTTCTGCGGGCGATCCTCTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGAACTC--TCAGCGGGGTGGGA--G----CAGGGGAGGACGCGGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCAGA---GGCTTGGGAGGCAGGAGGGGCGCAGTGGGGACACAGAGGGCATCACACATC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280091 406 - 110113093 -GAAG------------GCACCGGCCCTGAG----GCACGGTCGCCAGGGGGCACTCGGCCCCT---CCCACGTGTG----CGACCCAGAGA-----CCTCCGCCCAGACCCCGAA-------GCTCCAG-GCAGGGG-CGCTGGCAGCGG--TGCTGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCTGTGCTTTTGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-TGCGCAGA---------CATCTCGTGCGCCTTCTGCGGGCGATTCTCTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGGACTC--TCAGCGGGGTGGGA--G----CAGGGGAGGACA-GGGGGTCCCT-GGCTTCCTAGTCAGGAGCCCAGA---GGCTTGGGAGGCCGGAGGGGTGCAGCGGGGACACAGAGGGCATCACACATC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000222 415 - 92844088 -GAAG------------GCACTGGCCGCAAG----CCACCGTCACCAGGGGGC-CTCGGCCCCG---CCCACGTGTG----TGACCCAGAAG-----CCTCCGCCCGGACCCCAAAGCTCCCAGCTCCAG-GCAGGGGACGCGGGCAGCAG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCGAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-CGTGCAGACGTCTCGTGCGTCTCGTGCGCCTTCTGTGGGCGA----CTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGGACTC--TCAGC-GCGTGGGA--G----CAGGGGAGGATGGGGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCGGA---GGCTTGGGAGGCGGGAGGGGCACAGCGGGGAC-CAGAGGGCATCACACACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649478 415 + 96509753 -GAAG------------GCACTGGCCGCGAG----GCACCGTCACCAGGGGGC-CTCGGCCCCG---CCCACGTGTG----TGACCCAGAAG-----CCTCCGCCCAGACCCCAAAGCTCCCAGCTCCAG-GCAGGGGACGCGGGCAGCAG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCGAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-CGTGCAGACGTCTCGTGCGTCTCGTGCGCCTTCTGTGGGCGA----CTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGGACTC--TCAGC-GTGTGGGA--G----CAGGGGAGGATGGGGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCGGA---GGCTTGGGAGGCGGGAGGGGCACAGCGGGGAC-CAGAGGGCATCACACACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100539 415 - 16982598 -GAAG------------GCACTGGCCGGGAG----GCACCGTCACCAGGGGGC-CTCGGCCCCG---CCCACGTGTG----CGACCCAGAGG-----CCTCCGCCCGGACCCCAAAGCTCCCAGCTCCAG-GCAGGGGACGCGGGCAGCAG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCGAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-TGTGCAGACGTCTCGTGCGTCTCGTGCGCCTTCTGTGGGCGA----CTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGGACTC--TCAGC-GCGTGGGA--G----CAGGGGAGGATGGAGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCGGA---GGCTTGGGAGGCGGGAGGGGCACAGCGGGGAC-CAGAGGGCATCACACACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2948905 415 - 3785965 -GAAG------------GCACTGGTCCCGAG----GCACCGTCACTAGGGGGC-CTCGGCCCCG---CCCACGTGTG----CGACCCACAGG-----CCTCCGCCCGGACCCCGAAGCTCCCAGCTCCAG-GCAGGGGACGCGGGCAGCGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AT-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-TGTGCAGACGTCTCGTGCGTCTCGTGCGCCTTCTGTGGGCGA----CTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGCTTTCTCTGGACTC--TCAGC-GGGTGGGA--G----CAGGGGAGGATGG-GGGGTCCCT-GGCTTCCCAGTCAGGAGCCCGGA---GGCTTGGGAGGCGGGAGGGGCACAGCGGGGACACAGAGGGCATCACACACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89616674 411 - 90373283 -GAAG------------GCACTGGTCCGGAG----GCACCGTCACCAGGGGGC-CTCGGCCCCG---CCCACATGTG----CGACCCAGAGG-----CCTCCGCCCGGACCCCAAAGCTCCCAGCTCCAG-GCAGGGGACGCGGGCAGCGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-TGTGCAGA---------CATCTCGTGCGCCTTCTGTGGACGATTCTCTGTCTGCCTAACG--------------------------------------------------------------------------------------------------GGGTTTTCTCTGGACTC--TCAGG-GGGTGGGA--G----CAGGGGAGGATGGAGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCAGA---GGCTTGGGAGGCAGGAGGGGCACAGCGGGGACACAGAGGGCATCACACACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5499967 407 + 6149316 -GAAG------------GCACTGGTCCCGAG----GCACCGTCACTAGGGGGC-CTCGGCCCCG---CCCACGTGTG----CGACCCACAGG-----CCTCCGCCCGGACCCCGAAGCTCCCAGCTCCAG-GCAGGGCACGCGGGCAGCGG--TGCCGAGGCCCA--G---------------GCAGA---CAAACCACACGCGAGGG-AT-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-TGTGCAGA---------CGTCTCGTGCGCCTTCTGTGGGCGA----CTGTCTGCCTAACA--------------------------------------------------------------------------------------------------GGGTTTTCTCTGGACTC--TCAGC-GGGTGGGA--G----CAGGGGAGGATAGGGGGGTCCCT-GGCTTCCCAGTCAGGAGCCCGGA---GGCTTGGGAGGCGGGAGGGGCACAGCGGGGACACAGAGGGCATCACACACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4728122 375 - 5823884 -GAAG------------GCACTGGCCCCGAG----GCACCGTCACCAGGGGGC-CTCGGCCCCG---CCCACGTGGG----CGACCCAGAGG-----CCTCTGCCCGGACCCCGAA---------------------------------------CCGAGGCCCA--G---------------GCAGA---CAAACCACACGCAAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCCGTGC--TCGTTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AG-TGTGCAGA---------CATCTCGTGCGCCTTCTGTGTGCGATTCTCTGTCTGCCTAATG--------------------------------------------------------------------------------------------------GGGTTTTCTCCAGACTC--TCAGC-GGGTGGGA--G----CAGGGGAGGATGGGGGGGTCCTT-GGCTTCCCAGTCAGGAGCCCGGA---GGCTTGGGAGGCGGGAGGGGCACAGCGGGGACACAGAGGGCATCACACACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57438005 514 + 159171411 -GAAG------------GCACTGGCCCTGAG----GCGTTGTCGCCAGGGGGCATTCAGCCCCA---CCCACATGTGAGGTCGACCCAGAGG-----CCTCTGCCCCCACCCCAAAGCTCCCGGCTGCAG-TCAGGGG-CCCTGGCAGCGG--TGCCCAGGCCCA--G---------------GCAGG---CAAACCACACGCCAGGG-AC-ATCC----CATTTCCAAGCCGCGATTAATTTCCTGTGC--TTACTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-CGTGCAGA---------CGTCTCGTGCGCCTTCTGTGGGTGATTCTCTGTCTGCCTAGCGGGGTTTCTGTGGGTGATTCTCTGTCTGCCTAGCGGGGTTTCTGTGGGTGATTCTCTGTCGGCCTAGCAGGGTTTCTGTGGGTGGTTCTCTATCTAACGGGGTTTTCTCTGGACTC--TCAGTGGGGTTGGA--G----CAGGGGAGGATGGGGAGGTCCCT-GGCTTCCTAGTCAGAAGCCCAGA---GTCTTGGGAGGCAGAAGAGGCGCAGCTGGGACACAGAGGGCATCACCCATC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555293 437 + 16356641 -GAAG------------GCACTGGCCCTGAG----GTGCTGTCGCCAGGGGGCACTCGGCCCCA---CCCATACATGAGGTGGACCCCGAGG-----CCTCTGCCCCGACCCGGAAGCTCCCTGCTGCAG-GCAGGGG-CGCTGGCAGTGG--TGCCAAGGCCCG--G---------------GCAGG---CAAACCACACGCCAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCTGTGC--TCGCTGGCCAAGTTCTTCAATTAACTGAGCCCAGGGAAA----------------------------------------AA-CGTGCAGA---------CGTCTCGTGCGCCTGCTGCGGGTGATTCTCTGTCTGCCTAGCG--------------------------------------------------------------------GGGTTTCTGTGGGCGGCTCTCTGCCTGACGGGGTTTTCTCTGGACTC--TCGGCGGGGTCGGA--G----CAGGGGAGGATGGGGAGGTCCCT-GGCTTCCTGGTCAGAAGCCCAGA---GGCTTGGGAGGCA---------CCGTGGGGACACAGAGGGCGTCACCCATC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 401974 444 + 1231380 -GAAG------------GCACTGGCCCGGAG----GTGCTGTCGCCAGGGGGCATTTGGCCCCA---CCCACATGTGAGGTCGACCCAGAGG-----CCTCTGCCCCGACCCC-AAGCTCCCGGCTGCAA-GCAGGGG-CGCTGGCAGCGG--TGCCAAGGCCCA--G---------------GCAGG---CAAACCACACACCAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCTGTGC--TCGCTGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-CGTGCAGA---------CGTCTCGTGCGCCTTCCGTGGGTGATTCTCTGTCTGCCTAGCG--------------------------------------------------------------------GGGTTTCTGTGGGTGGTTCTCTGCCTGACGGGGCTTTCTCTGGACTC--TCAGGGAGGTCGGA--G----CAGGGGACGATGGGGAGGCCCCT-GGCTTCTTGGTCAGAAGCCCAGA---GTCTTGGGAGGCAGGGGAGGCTCAG-GGGAACACAGAGGGCATCACCCATC i cebCap1.NW_016107870v1 I 163 C 0 s aotNan1.NW_018500483v1 1962802 446 + 11732439 -GAAG------------GCACTGGCCCTGAG----GCGCTGTCACCATGGGGCATTTGGCCCCA---TCCACATGTGAGGTCAACTCAGAGG-----CCTCTGCCCTGACCCCGAAGCTCCCGGCTGCAG-GCAGGGG-CGCTGGCAGCAG--TGCCGACGCCCA--G---------------GCATG---CAAACCACGCGCCAGGG-AC-GTCC----CATTTCCAAGCCGCGATTAATTTCCTGCAC--TCGCCGGCCAAGTTCTTCAATTAACTGAGCCCTGGGAAA----------------------------------------AA-CGTGCAGA---------CGTCTCGTGCGCCTTCTGTGGGTGGTTCTCTGTCTGCCTAGCG--------------------------------------------------------------------GGGTTTCTGTGGGTGGTTCTCTGCCTAACGGGGTTTTCTCTGGACTC--TCAGTGGGGTCGGA--G----CAGGGGAGGATGGGGAGGTCCCT-GGCTTCCTGGTCAGAAGCCCAGA---GTCTTGGGAGGCAGGAGAGGCGCAGCGGGGACACAGAGGGCATCACCCATC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22176708 388 + 22939663 ---------------------------------------------CAGG-----TTTGGCCCCT---CTC-TGCATG----GGGCCCCCAGG-ATGACTCCTGCACAGACCCTACACTTCCCAGTTTTGA-GCAAAGG-AGCTGGCAGTGGATAATGAAGGCACA--GCCAGCGCCTGCTGGCACAGA---CAAAACACCCTCAAAGACACGGTCA----CATTTCAAAACCGCAATTAATTTCCTTTGC--TCATTAGCCAATTTATTCAATTAACTGAGCACTGGAAAA---------------------------------------TGA-TGTGCAGG---------CATCTCATATGCCTCATATTCGCAATT--CTGTCTGCCTGGTG--------------------------------------------------------------------------------------------------GTATTTCCTCCAGACTCTATCAGT-GGG--------------AGAGAGGCTGCAGAGACCCCT-GG--GCTGGGTCAGGA-CCCCCA---GGCCTGGGTAGCAAAAGAGACACAGGAGGGGCCCTGA--TCATCACCCCTT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181118827 465 + 182113224 ----A------------ACACTGGCCCTAAGAGATGCACAGACCCCACAGCCTTCCTGGGCACGGGTCCCAGGGCTG----TAGCTCCTGAGAACGTCCAACACCAGAGTAGCAAGCTTCCGAGCTCCCGAACAGAGG-CAGTGGCAGCAG--TGACCGGCTGCT--G---------------GCATAATCAGAACAGCACAAAGCCA-CG-GTTA----CATTTCAAAACTGCAATTAATTTCCTTTGC--TCGTTAGCCAATTTATTCAATTAACTGAGCCCTGaaaaaaaaaaaaaaagaaaaagaaaaCAGGAGAGAGAGAGGAAACAA-AGTACAGA---------CATCTCGTTTGCCTTCTAGCGCTGATT--TTGACTGCTTAG-G--------------------------------------------------------------------------------------------------GTATCTTCTCCCAAGTCGGTCAGCGAGGAAGGAATG----GAAAGGAGGGTGGGGGATTCCCA-TGCT--CTGATAAGGACCCTGGATAGGTGATGAAAACCATGAGAAACACTGAAGGTTCCTATA--GCAGAAAATATG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 121414 408 + 555560 GGAAGCAGCTCCACGACGCAGCGGCCCTG-G----GCGCGGCTGCTGGGGCAC-------CCCA---CTCCTCTCTGG---CTCCCCTGGGG-----GCT---------CCCGGCACCTCACGTCCTCAG--CAGAGG-CACTGGCAGCGC--GGCCAGTGCCCGCTG---------------GCAGAGA-CAAAGCACAAGCAGCGA-AA-CTGTTGAGCATTTCAAAACCGCAATTAATTTCCTCTTC--TCATTAGCCCATTTATTCAATTAACCGAGCCCTGGAAAG----------------------------------------AACCGTCCAGA---------TGCCTCTT--GTCTCGTATCTGAGATT--TCTCCTGCTGAACT--------------------------------------------------------------------------------------------------GTGTTTTCTCCGG-CTCGGTCAGCAGAGCGGGA--GCGCTCGTGCCAGGACACAGGGACCCCTCGGCT--CCGGTCAGGGCCCCAGG---GGTTTGGACAT-------GGCAGCGCGGGAGATTGAGGCACCTCCCGAA-- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089110 537 + 47698779 I a score=738750.000000 s hg38.chr20_KI270871v1_alt 41199 69 + 58661 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGCC-----ACGCACATAATCCT-GTg---ggcttcccggag s panTro5.chr20 65616919 69 + 66533130 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGCC-----ACGCACATAATCCT-GTg---ggcttcccggag i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377154 69 + 62195757 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGCC-----ATGCACATAATCCT-GTg---ggcttcccggag i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791701 69 - 1017659 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGCC-----ACGCACATAATCCT-GTg---ggcttcccggag i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280497 69 - 110113093 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGCC-----ACGCACATGATCCT-GTG---Cgcttcccggag i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000637 72 - 92844088 ACAGGAGGGGCTCAGGGACCCAGTTCAGCCCAGCAGAGCC-----ACGCACATAATCCG-GTGGGCGGCTTCCCGAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95649893 72 + 96509753 ACAGGAGGGGCTCAGGGACCCAGTTCAGCCCAGCAGAGCC-----ACGCACATAATCCG-GTGGGCGGCTTCCCGAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16100954 72 - 16982598 ACAGGAGGGGCTCAGGGACCCAGTTCAGCCCAGCAGAGCC-----ACGCACATAATCCG-GTGGGCGGCTTCCCGAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2949320 72 - 3785965 ACAGGAGGGGCTCAGGGACCCAGTTCAGCCCAGCAGAGCC-----ACGCACATAATCCG-GTGGGCGGCTTCCCGAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617085 72 - 90373283 ACAGGAGGGGCTCAGGGACCCAGTTCAGCCCAGCAGAGCC-----ACGCACATAATCCG-GTGGGCGGCTTCCCGAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5500374 72 + 6149316 ACAGGAGGGGCTCAGGGACCCAGTTCAGCCCAGCAGAGCC-----ACGCACATAATCCG-GTGGGCGGCTTCCTGAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4728497 70 - 5823884 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGC-------CGCACATAATCCG-GTGGGCGGCTTCCCGAAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57438519 69 + 159171411 ACAGGAGGGGCTCAGGGACCCTGCTCAGCCCAGCAGAGCC-----ACACACACAGTCCT-GTG---GGCTTCCCGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555730 68 + 16356641 ACAGGAGGGGCTCGGGGACACAGCTCAGCCCGGCAGAGCC-----ACGAGCGCAATCC--GTG---GGCTTCCCGGAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 402418 69 + 1231380 ACAGGAGGGGCTCAGGGACCTAGCTCAGCCCAGCAGAGCC-----ACATACACAATCCT-GTG---GGCTTCCTGGAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1963248 69 + 11732439 ACAGGAGGGGCTCAGGGACCCAGCTCAGCCCAGCAGAGCC-----ACACACACAATCCT-GTG---GGCTTCCCAGAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177096 66 + 22939663 ACCAGAGGGCCACCAGAACCCAGCCTGACCCAGGGGAG---------ACACAGAACCCTGGTG---GGCTTCCCTGAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181119292 56 + 182113224 CCAGGA-------------CCAGCTTAACCCA-CAAGGCA-----AGGTAGA-AGCCCA-AAGGA-GGCTTCCCCAAA i mm10.chr2 C 0 C 0 s canFam3.chr24 47089647 65 + 47698779 ACAAGAGGAGCCCAGGGACCCTTCCGGGCCAGGC--TGCC-----ACACGCACAG--CT-GCG---GGCGCCCCGAAG i canFam3.chr24 I 537 I 1677 s dasNov3.JH567899 121822 66 + 555560 ACCGAAGGAGC------ACCTGCCCTCCTCCTGCAGGGCCTGGGGACACGCA-AGCCAG-GCG---GGCTTCCTGGG- i dasNov3.JH567899 C 0 C 0 a score=346105.000000 s hg38.chr20_KI270871v1_alt 41268 85 + 58661 gaggcgtgtacaggg------gcgggggg---gctacaggatacagaggag-----ttggccacaggg-ggagaaggggaa---gggcatt--------------------------------------------------------------cccagcagaggg s panTro5.chr20 65616988 85 + 66533130 gaggcgtgtacaggg------gcgggggg---gctacagggtacagaggag-----ttggccacaggg-ggagaaggggaa---gggcatt--------------------------------------------------------------cccagcagaggg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377223 85 + 62195757 gaggtgtgtacaggg------gcgggggg---gctacagggtacagaggag-----ttggccacaggg-ggagaaggggaa---gggcatt--------------------------------------------------------------cccagcagaggg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791770 84 - 1017659 gaggcgtgtaca-gg------gcgggggg---gctacagggtacagaggag-----ttggccacaagg-ggagaaggggaa---gggcatt--------------------------------------------------------------cccagcagaggg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280566 85 - 110113093 gaggcgtatacaggg------gcaggggg---gctacagggtacagaggag-----ttggccacaagg-ggagaaggggaa---gggcttt--------------------------------------------------------------cccagcagaggg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000709 74 - 92844088 GAGGCACGTACGGGG-----------------GCTACAGGG--CAGAGGGG-----TTGGCCACAAGG-GGAGAA-GGGAA---GGGCATT--------------------------------------------------------------CCCAGCAgaggg i rheMac8.chr10 C 0 I 12 s macFas5.chr10 95649965 74 + 96509753 GAGGCACGTACGGGG-----------------GCTACAGGG--CAGAGGGG-----TTGGCCACAAGG-GGAGAA-GGGAA---GGGCATT--------------------------------------------------------------CCCAGCAgaggg i macFas5.chr10 C 0 I 7 s macNem1.NW_012014244v1 16101026 74 - 16982598 GAGGCATGTACGGGG-----------------GCTACAGGG--CAGAGGGG-----TTGGCCACAAGG-GGAGAA-GGGAA---GGGCATT--------------------------------------------------------------CCCAGCAgaggg i macNem1.NW_012014244v1 C 0 I 12 s cerAty1.NW_012001373v1 2949392 74 - 3785965 GAGGCACGTACGGGG-----------------GCTACAGGG--CAGAGGCG-----TTGGCCACAAGG-GGAAAA-GGGAA---GGGCATT--------------------------------------------------------------CCCAGCAgaggg i cerAty1.NW_012001373v1 C 0 I 12 s chlSab2.chr2 89617157 85 - 90373283 GAGGCACGTACGGGGGCG---GGGGGGAA---GCTACAGGG--CAGAGGCG-----TTGGCCACAAGG-GGAGAA-GGGAA---GGGCATT--------------------------------------------------------------CCCAGCAgaggg i chlSab2.chr2 C 0 I 12 s manLeu1.NW_012104365v1 5500446 74 + 6149316 GAGGCACGTACGGGG-----------------GTTACAGGG--CAGAGGCG-----CTGGCCACAAGG-GGAGAA-GGGAA---GGGCATT--------------------------------------------------------------CCCAGCAgaggg i manLeu1.NW_012104365v1 C 0 I 12 s colAng1.NW_012114444v1 4728567 89 - 5823884 GACGCACATACGGGGGCGGGCGGGGGGCA---GCTACAGGG--TACAGGAG-----TTGGCCACAAGG-GGAGAAGGGGAA---GGGCATT--------------------------------------------------------------CCCAGCAGAGGG i colAng1.NW_012114444v1 C 0 I 7 s calJac3.chr5 57438588 69 + 159171411 GAGGTGTGTACAGGG------GGAGGGAGGACCCTACAGGGTAAAGAGGAG-----TTGGCCACAAGCAGAAAAG-GGGAA------------------------------------------------------------------------------------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555798 68 + 16356641 TTGGTGTGTACAGCG------GGAGGGAGTGCCCTACAGGCTAAAAAGGAC-----TTGGCCACAGGC-GGACAG-GGGAG------------------------------------------------------------------------------------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 402487 67 + 1231380 GAGGTGTGTACAGGG------GGAGGGTG-GCCCTACAGGGTAAAGAGGAG-----TTGGCCACAAGC-GGAAAA-GAGAG------------------------------------------------------------------------------------ i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1963317 69 + 11732439 GAGGTGTGTACAGGG------GGAGGGAGGACCCTACAGGGTAAAGAGGAG-----TTGGCCACAAGCAGAAAAG-GGGAG------------------------------------------------------------------------------------ i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177162 58 + 22939663 GAGGTGTCTGCTGGG------ACAGCC-----CCTGCAG------------------------------GGTGAA-GGCAA---GGGTGCT--------------------------------------------------------------CCTGGCAGGGGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181119348 152 + 182113224 GAGG-GTTTCCTGGG------GCCGGAT----CCTGCTGAGTCAGGAGGAGCAGGCTTGGCTAAGAGA-GAAGCA-GGGAAAGTGGGTttttgttctgttttgttttgttttgttttgttctgttctgttctgttttgttctgttttgttttgtttAACAGAAAA i mm10.chr2 C 0 I 20 s dasNov3.JH567899 121888 50 + 555560 GCGGCGGCCCCAGGA------TGAGT------CCTGCAGGCTGGGAAGCAG-----AGGCCCAAAGG-------------------------------------------------------------------------------------------------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=5068.000000 s hg38.chr20_KI270871v1_alt 41353 9 + 58661 aggagccgc--- s panTro5.chr20 65617073 9 + 66533130 aggagccgc--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377308 9 + 62195757 aggagccgc--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791854 9 - 1017659 aggagccgg--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280651 9 - 110113093 aggagcagg--- i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95650046 5 + 96509753 agggg------- i macFas5.chr10 I 7 C 0 s colAng1.NW_012114444v1 4728663 5 - 5823884 AGGGA------- i colAng1.NW_012114444v1 I 7 C 0 s calJac3.chr5 57438657 9 + 159171411 AAGAGCAGG--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15555866 9 + 16356641 AGGAGCAGC--- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 402554 9 + 1231380 AAGAGCAGG--- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1963386 9 + 11732439 AAGAGCAGG--- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177220 5 + 22939663 AGGAG------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181119520 6 + 182113224 ATGTGC------ i mm10.chr2 I 20 I 6 s dasNov3.JH567899 121938 9 + 555560 ---AGACGGCTC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I e manLeu1.NW_012104365v1 5500520 12 + 6149316 I e chlSab2.chr2 89617242 12 - 90373283 I e cerAty1.NW_012001373v1 2949466 12 - 3785965 I e macNem1.NW_012014244v1 16101100 12 - 16982598 I e rheMac8.chr10 92000783 12 - 92844088 I a score=1190955.000000 s hg38.chr20_KI270871v1_alt 41362 143 + 58661 tggg------------gaggcctggcgagagaagggcag------------------gcgtatctgcatcccaccgagga--------------------------------------------tgaggctgaccagacttgagaacagggcggggtggGGA------CAACGACAGCCCCACA-GACTTGAATTCTGAGTCCTCAGTGCCGCATCCAGGAAGG s panTro5.chr20 65617082 143 + 66533130 tggg------------gaggcctggagagagaagggcag------------------gcgtatctgcgtcccaccgagga--------------------------------------------taaggctgaccagacttgagaacagggcggggtggGGA------CAACGACAGCCCCACA-GACTTGAATTCTGAGTCCTCGGTGCCGCATCCAGGAAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377317 143 + 62195757 tggg------------gaggcctggagagagaagggcag------------------gcgtatctgcgtcccaccgagga--------------------------------------------tgaggctgaccagacttgagaacagggcggggtggGGA------CAACGACAGCCCCACA-GACTTGAATTCTGAGTCCTCGGTGCCGCATCCAGGAAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 791863 143 - 1017659 tggg------------gaggcctggagagagaagggcag------------------gcgtatctgcgtcccaccgagga--------------------------------------------tgaggctgaccagacttgagaacagggcggggtggGGA------CAACAACAGCCCCACA-GACTTGAATTCTGAGTCCTTGGTGCCACATCCAGGAAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280660 139 - 110113093 tggg------------gaggcctg--gagagaagggcag------------------gcGCATCCACGTCCCACCGAGGA--------------------------------------------TGAGGCTGACCACACTTGAGAACAGCGTGGGGTGGGGA------CAAGGACAGCCCCACG-GAC--GAATTCTGAGTCCTCGGTGCCGCATCGGGGAAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000795 142 - 92844088 tggg------------gaggcctggagagagaagggcag------------------gCGTATCCACGTCCCA-CGAGGA--------------------------------------------TGAGGCTGCCCGGACTTGAGAACAGGGTGGGGTAGGGG------CAAGGACAGCCCCACA-GACTCGAATTCTGAGTCCTTGGTGCCACATCCAGGCAGG i rheMac8.chr10 I 12 C 0 s macFas5.chr10 95650051 142 + 96509753 tggg------------gaggcctggagagagaagggcag------------------gCGTATCCACGTCCCA-CGAGGA--------------------------------------------TGAGGCTGCCCGGACTTGAGAACAGGGTGGGGTAGGGG------CAAGGACAGCCCCACA-GACTCGAATTCTGAGTCCTTGGTGCCACATCCAGGCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101112 142 - 16982598 tggg------------gaggcctggagagagaagggcag------------------gTGTATCCACGTCCCA-CGAGGA--------------------------------------------TGAGGCTGCCCGGACTTGAGAACAGGGTGGGGTAGGGG------CAAGGACAGCCCCACA-GACTCGAATTCTGAGTCCTTGGTGCCACATCCAGGCAGG i macNem1.NW_012014244v1 I 12 C 0 s cerAty1.NW_012001373v1 2949478 142 - 3785965 tggg------------gaggcctggagagagaagggcag------------------gCGTATCCACGTCCCA-CGAGGG--------------------------------------------TGAGGCTGCCCGGACTTGAGAACAGGGTGGGGTAGGGG------CAAGGACAGCCCCACA-GACTCGAATTCTGAGTCCTTGGTGCCACATCCAGGCAGG i cerAty1.NW_012001373v1 I 12 C 0 s chlSab2.chr2 89617254 142 - 90373283 tggg------------gaggcctggagagagaagggcag------------------gCGTATCCACATCCCA-TGAGGG--------------------------------------------TGAGGCTGCCTGGACTTGAGAACAGGGTGGGGTAGGGG------CAAGGACAGTCCCACA-GACTCGAATTCTGAGTTCTTGGTGCAACATTCAGGAAGG i chlSab2.chr2 I 12 C 0 s manLeu1.NW_012104365v1 5500532 142 + 6149316 tggg------------gaggcctggagagagaagggcag------------------gCGTATCCACGTCCCA-CGAGGA--------------------------------------------TGAGGCTGCCCGGACTTGAGAACAGGGTGGGGTAGGGG------CAAGGACAGCCCCACA-GACTCGAATTCTGAGTCCTTGGTGCCACATCCAGGCAGG i manLeu1.NW_012104365v1 I 12 C 0 s colAng1.NW_012114444v1 4728668 142 - 5823884 TGGG------------GAGGCCTGGAGAGAGAAGGGCAG------------------GCGTATCCACGTCCCA-TGAGGA--------------------------------------------TGAGGCTGCCCAGACTTGAGAACAGGGTGGGGTGGGGG------CAAGGACAGCCCCACA-GACTCGAATTCTGAGTCCTTGGTGCCACATCCAGGAAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57438666 142 + 159171411 TGGG------------GAGGCCTAGAGAGAGAAGTGCAG------------------GTGTGTCCGTTTCTGGTCGAGGG--------------------------------------------TGAGGCTGACCAGATTTGAGAACAG-GCGGGGTGAGGG------CAGGGATGGCCCCACA-GACTCGAATTCTGAGACCTTGCTGCTGCATCCAAGAAGG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15555875 136 + 16356641 TGGG------------GAGGCCTAGAGAGAGAAGGGCGG------------------GCGTGTCC------GGCCCAGGG--------------------------------------------TGACGCTGACCAGATTTGAGAACAG-GCGGGGTGGGGG------CGGGGACGGCCCCACA-GACTCGACTTCTGAGCCCTGGCTGCTGCGTCCAGGCAGG i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 402563 142 + 1231380 TGGG------------GAGACCTAGAAAGAGAAGGGCAG------------------GCGTGTTCATGTCCGGCCGAGGG--------------------------------------------TGAGGCTGACCAGATTTGGGAACAG-GCGGGGTGGGGG------CGGGGACGGCCCCACA-GACTCGAATTCTGAGCCCTTGCTGCTGCATCCGGGAAGG i cebCap1.NW_016107870v1 C 0 I 1 s aotNan1.NW_018500483v1 1963395 142 + 11732439 TGGG------------GAGGCCTAGAGAGAGTAGGGCAG------------------GCGTGTCCATGTCTGGCTGAGAG--------------------------------------------TGAGACTGACCAGACTTGAGAACAG-GCAAGGTCGAGG------CGGGGACAGCCCCGCA-GACTCGAATTCTGAGCCCTTGCTGCTGCATCCAGGAAGG i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22177225 95 + 22939663 --------------------------------AGGGCCA------------------GGGCATCAGGGTACAGCAGACAG--------------------------------------------TGAATCCAACCAGACTGGAGGACAG-----------TG------CAAGGGCAG-CCCACA-GAC----------------AAATGCTGCACCTAGGAAGG i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181119532 223 + 182113224 TGGGCAAAATAGAATTCAGGGTCAGGGACAGAATTACAGGGATAGACCTCAAAAATAGAGTGTCCACGATTAGTCCAGAAAATCCAGCCCACCACTACAATGTATTCCTTTATGTTAAAAACACTGAAGCCgagccaatgagatagctcagcaggaaaaggagtttgctaccgaccgaaccgtatgacctgagttc-aatccctgagatccacatgatggaagg i mm10.chr2 I 6 I 90 s dasNov3.JH567899 121947 78 + 555560 --------------------------------GGGGCTG----------------------------------CAGAGGC--------------------------------------------CTCATCTGGCCGGAC--GGGAGCAGGG------GAAGG------CGAGGAGGGCTGTGCA-GGGCAGA--------------------CGCCTGGGGGG- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=602808.000000 s hg38.chr20_KI270871v1_alt 41505 69 + 58661 -CAGCTCCTCGGGCTGCAGGGAACCTTCCTCTAAACT-AAAAAAAACGAGGCCCAGGTCCCAAATGTTCAG s panTro5.chr20 65617225 69 + 66533130 -CAGCTCCTCGGGCTGCAGGGAACCTTCCTCTAAACT-AAAAAAAACGAGGCCCAGGTCCCGAATGTTCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377460 69 + 62195757 -CAGCTCCTCGGGCTGCAGGGAACCTTCCTCTAAACT-AAAAAAAACGAGGCCCAGGTCCCGAATGTTCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792006 70 - 1017659 -CAGCTCCTCGGGCTGCAGGGAACTTTCCTCTAAACTAAAAAAAAATGAGGCCCAGGTCCCGAATGTTCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280799 70 - 110113093 -CAGCTCCTCGGGCTGCACGGAACCTTCCTCTAAATTAAAAAAGAACGAGGCCCAGATCCCGAATGTTCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92000937 70 - 92844088 -CAGCTCCTCGGGCTGCAAGGAACCTTCCCGTAAATTAAAAAAGAAGGAGGTCCAGATCCCGGGTGTTCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650193 70 + 96509753 -CAGCTCCTCGGGCTGCAAGGAACCTTCCCGTAAATTAAAAAAGAAGGAGGTCCAGATCCCGGGTGTTCGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101254 70 - 16982598 -CAGCTCCTCGGGCTGCAAGGAACCTTCCCGTAAATTAAAAAAGAAGGAGGTCCAGATCCCGGGTGTTCGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2949620 70 - 3785965 -CAGCTCCTCGGGCTGCAAGGAACCTTCCCGTAAATTAAAAAAGAAGGAGGTCCAGATCCCGGGTGTTCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617396 70 - 90373283 -CAGCTCCTCGGGCTGCAAGGAACCTTCCTGTAAATTAAAAAAGAATGAGGTCCAGATCCTGGGTGTTCCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5500674 70 + 6149316 -CAGCTCCTCGGGCTGCAAGGAACCTTCCTGTAAATTAAAAAAGAAGGAGGTCCAGATCCCGGGTGTTCGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4728810 70 - 5823884 -CAGCTCCTCGGGCTGCAAGGAACCTTCCTGTAAATTAAAAAAGAATGAGGTCCAGATCCTGGGTGTTCGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57438809 65 + 159171411 -CAGCTCCTCGGGCTGCAAGGAACCTTCCTCCAAATTAAGAAAGAACGAGGCCCAGGTCCCTGGTG----- i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15556012 65 + 16356641 -CAGCTCCTCGGGCTGCAAGGACTCTTCCTCCAAATGAAGAAAGAACGAGGCCCCGGTCCCTGGCG----- i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 402706 65 + 1231380 -CAGCTCCTCGGGCTACAAGGAACCCTCCTCCAAATTAAGAAAGAGCGAGGCCCAGGTCCCTGGTG----- i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1963538 65 + 11732439 -CAGCTCCTCGGGCTGCAAGGAACCTTCCTCCAAATTAAGAAAGAACGAGGCCCAGGTCCCTGGTG----- i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22177321 70 + 22939663 -CAGCCGCTCACACCACAGGGAACATGCCTCTAAAAGGAAAGGGAACAAGGGCACAGTTGCAGGCAGGCAG i otoGar3.GL873542 I 1 C 0 s dasNov3.JH567899 122025 66 + 555560 CTCGCGCCTCTCGCTGCATAGAGAC-GCTCCTGAGTGGGGGCACCGAGCGGGCCCGGGCCCCACCAT---- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181119755 90 + 182113224 I e canFam3.chr24 47089712 1677 + 47698779 I a score=1730324.000000 s hg38.chr20_KI270871v1_alt 41574 242 + 58661 GA--CTCAG-CCTGCTTCCTAAGGTGGCTCCGACCAGGCATCTCAGAGCATTCCAGAAACCCTGGAGACAG----AATGCAGCCGGA----TGCGGCCGAG-----ATCTGTGGCTCCTCCCAGCAGGCGTGGACCAGGAGGAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGGCCCTCAGAA------GGCTCCAGCTCCT---TCCAGCTCAGCTTCCGCC-----CAT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCTGCA s panTro5.chr20 65617294 241 + 66533130 GA--CTCAG-CCTGCTTCCTAAGGTGGCTCCGACCAGGCATCTCAGAGCATTCCAGAAACCCTGGAGACAG----AATGCAGCCGGA----TGCGGCCGAG-----ATCTGTGGCTCCTCCCAGCAGGCGTGGACCAGGAGGAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGGCCCTCAGAA------GGCT-CGGCTCCT---TCCAGCTCAGCTTCCGCC-----CAT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCTGCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377529 241 + 62195757 GA--CTCAG-CCTGCTTCCTAAGGTGGCTCCGACCAGGCATCTCAGAGCATTCCAGAAACCCTGGAGACAG----AATGCAGCCGGA----TGCGGCCGAG-----ATCTGTGGCTCCTCCCAGCAGGCGTGGACCAGGAGGAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGGCCCTCAGAA------GGCT-CGGCTCCT---TCCAGCTCAGCTTCCGCC-----CAT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCTGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792076 242 - 1017659 GA--CTCAA-CCTGCTTCCTAAGGTGGCTCCGACCAGGCATCTCAGAGCATTCCAGAAACCCTGGAGACAG----AATGCAGCCGGA----TGCGGCCGAG-----ATCTGTGGCTCCT-CCAGCAGGCATGGACCAGGAGGAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGGCCCTCAGAA------GACT-CGGCTCCT---TCCAGCTCAGCTTCCGCC-----CAT--CTGCCCCCC-------------------------CGCCTC---GCCGG-CCCCCAGACCCTGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109280869 245 - 110113093 GA--TTCAG-CCTGCTTCCTAAGGTGGCTCCAACCGGGCATCCCAGAGCATTCCAGAAACCCCAGAGACAG----AATGCACCCGGA----TGCGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGGACCGGGAGGAATAAAGCCAG------AATTCAGGGAGAAGATGAATCTC--ACAGCCAGGCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CAT--CTG--CCCC-------------------------CGCCTC---CCCAG-CCCGCAGACCCCGCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001007 236 - 92844088 GA--------CCCGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCAGAAACGCTGCAGAC-A----AATGCACCCGGA----TGCGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAACCGGGAGGAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGCCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCCGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650263 236 + 96509753 GA--------CCCGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCAGAAACGCTGCAGAC-A----AATGCACCCGGA----TGCGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAACCGGGAGGAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGCCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCCGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101324 236 - 16982598 GA--------CCCGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCAGAAACGCTGCAGAC-A----AATGCACCCGGA----TGCGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAACCGGGAGAAATAAAGCCAG------AATTCAGGG---AGATGAATCTC--GCAGCCAGCCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCCGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2949690 239 - 3785965 GA--------CCCGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCGGAAACGCTGCCGAC-G----AATGCACCCGGA----TGTGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAACCGGGAGGAATAAAGCCAG------AATTCAGGGAGAAGAGGAATCTC--GCAGCCAGCCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCCGCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617466 239 - 90373283 GA--------CCTGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCAGAAACGCTGCAGAG-G----AATGCACCCGGA----TGCGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAACCAGGAGGAATAAAGCTAG------AATTCAGGGAGAAGATGAATCTT--GCAGCCAGCCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCCGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5500744 239 + 6149316 GA--------CCCGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCGGAAACGCTGCCGAC-G----AATGCACCCGGA----TGCGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAACCGGGAGGAATAAAGCCAG------AATTCAGGGAGAAGAGGAATCTC--ACAGCCAGCCCCTCAGAA------GGCTCTGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCCACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4728880 244 - 5823884 GA--CTCAG-CCTGCTTCCTAAGGTGGCTCCGACCAGGCATCTCGGAGCATTCCAGAAAGCCTGCAGAC-G----AATGCCCCCGGA----TATGGCCGAG-----ATCTGCGGCTCCTCCCAGCAGGCATGAATCGGGAAGAATAAAGCCAG------AATTCAGGGAGAAGATGAATCTC--GCAGCCAGCCCCTCAGAA------GGCTCCGGCTCCT---TCCAGCTCAGCTTCCGCC-----CGT--CTG--CCCC-------------------------CGCCTC---GCCGG-CCCGCAGACCCTGCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57438874 234 + 159171411 --------------------------------ACCAGGCTTCTCGAACCATCTCAGAAACCCTGGAGACAG----AGTGCACGCAGA----TACGGCCGAG-------CTGCGGCTGCTCCCCGCAGGCATGGACCAGGAGGAACGGAGCCAG------AATTCAGGGAGAAGATGGATCTCCTGCAGCCAGCCCCTCAGAA------GGCTCCGGCTGCT---TCCAGCTCAGCTTCCGCCAGCCTTGC--CTG--CCCCTGC----CCCCGCCCC---------CGCCTC---GCTGGTCCTGCAGACCCTGCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556077 180 + 16356641 --------------------------------ACCAGGCTTCTCGAACCATTTCAGAAAGCCCGGAGACGG---------------------------------------------------TGCGGGCAGGGACCAGGAGGACCAGAGCCAG------GGCGCGGGGAGAAGATGCATCTCCTGCAGCCAGCCCCTCGGAA------GGCTCGCGCTCCT---TCCAGCTCAGCCTCCGCC---------------CACCTGC----Tcccgcccc---------cgcccc---gacgg--ccgcggacc----- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 402771 246 + 1231380 --------------------------------ACCAGGCTTCTCAAACCATTTCAGAAACCCTGGAGGCAG----AGCACACGCAGA----TGCGGGCGAG-------CTGTGGCTGCTCCCCGTGGGCAGGGACCAGGAGGAACGGAGCCAG------GATTCAGGGAGAAGACGGATCTCCTGCAGCCAGCCCCTCAGAA------GCCTCCGGCTCCT---TCCAGCTCAGCTTccgccggccccgc--ctg--cccccgccccgccccgccccgcctcgcctcgcctc---gccGG-CCCGCAGACCCTGCA i cebCap1.NW_016107870v1 C 0 I 60 s aotNan1.NW_018500483v1 1963603 191 + 11732439 --------------------------------ACCAGGCTTCTCAAACCATTTCAGAAACTCTGGAGACGG----ATCGCACACAGA----TGCAGCCAAG-------CT--GGCTGCTCCCCGTGGGCATGGACCAGGAGGAACAGAGCCAG------AATTCAGGGAGAAGATGGATCTCCTGCAGCCAGCCCCTCAGAA------GGCTCTGGCTCCT---TCCAGCTCAGCTTCCGCCCTCCTCGC--CTG--CC--------------------------------------------------------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177391 244 + 22939663 GCCCCTCAGCTCTGCTTCCCACAGTGGCTCTGACCAGGAATAACAGGACGT-CCAGTAGCCCTTGAGACAGGGCCAATGTGTATGGAGCAGTACCACCCAG------TTTGTAGCCCTTCCTAGTACTCGAAGACCAGATGAGCCAA--CCAG------ACACCCAGGGGAAGAGAGAGCTC--ACACCCAACCACTCGGAA------CATTCCAGAGGGT---TCCAGCTGGGCTCCTGCC-----TTG--CTG--GCTG-------------------------CAC------------CCTGCAGACCCTCCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181119845 165 + 182113224 --aaCTCAG-CTTTATTCCTAAGG-GTCTCTGACCAAGCATCTCAGAACATTCTGG--------------G----GGCAGTTTTGAA----TGTGGCCACG-----ATT------------------------ACCTGGATATACAAGGCCAG-TGACTAATCTTGAGAGAATAGGAACCGT---------GTTCCCCAGAA------AACT----CTCCCGTAGCCAGC--AGGTTGTGTA-------------------------------------------------------------------------- i mm10.chr2 I 90 I 12 s dasNov3.JH567899 122091 249 + 555560 ----CTCGGCCGCGCTCCCCGAGGCGGCTCC-ACCGGGCACCTCAGCGTGTTTCGGGAGCCCTG--GGCGG----GGCTGGCCTGGC----CACAGCACGGGGTGGACCAGTGGCCCTTCCCAGC---------CTGGGGTGTGCGGAGCCAAACCCCCAACCCAAGGAGAAGA-----CAC--CCTGCCGCAGCCCCAGAACATTCTGGCTCAGGCCTTC---TGCAGCAGAGCAGCTGCC-----CCTTCCCA--CCCC-------------------------TGCCTCCATGCTGGGCCAGCAGACCCCGC- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=612372.000000 s hg38.chr20_KI270871v1_alt 41816 93 + 58661 TGAAGGAAGCAGCTGCCCCTCCCGCCGCT----GCCCC---TCCTGCCACAG---CCCCA---------CCCGGAAAGTGCAGGCA-------ACAGCTCCGACTTTTGTTTTTTAAGT s panTro5.chr20 65617535 93 + 66533130 TGAAGGAAGCGGCTGCCCCTCCTGCCGCT----GCCCC---TCCTGCCACAG---CCCCA---------CCCGGAAAGTGCAGGCA-------ACAGCTCCGACTTTTGTTTTTTAAGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377770 92 + 62195757 TGAAGGAAGCGGCTGCCCCTCCTGCTGCT----GCCCC---TCCTGCCACAG---CCCCA---------CCCGGAAAGTGCAGGCA-------ACAGCTCCGACTTTTG-TTTTTAAGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792318 93 - 1017659 TAAAGGAAGCAGCTGCCCCTCCCGCCGCT----GCCCC---TCCCGCCACAG---CCCCA---------CCCGGAAAGTGCAGGCA-------ACAGCTCCGACTTTTGTTTTTTAAGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281114 78 - 110113093 GGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCA---------CCCGGAAAGTGCAGGCA-------ACAGCTCCGAGTTTTGTTTTTTAAGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001243 77 - 92844088 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCG----------CTGAAAAGTGCAGGCA-------ACAGTTCCGAGTTCTGTTTTTTAAGT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650499 77 + 96509753 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCG----------CTGAAAAGTGCAGGCA-------ACAGTTCCGAGTTCTGTTTTTTAAGT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101560 77 - 16982598 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCG----------CTGAAAAGTGCAGGCA-------ACAGTTCCGAGTTCTGTTTTTTAAGT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2949929 77 - 3785965 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCA----------CTGAAAAGTGCAGGCA-------ACAGTTCCGAGTTCTGTTTTTTAAGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617705 77 - 90373283 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCA----------CTGAAAAGTGCAGGCA-------GCAGTTCCGAGTTTTGTTTTTTAAGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5500983 77 + 6149316 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCA----------CTGAAAAGTGCAGGCA-------ACAGTTCCGAGTTCTGTTTTTTAAGT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729124 77 - 5823884 CGGAGGAA---------------GCCGCT----GCCCC---TCCCGCCGCAG---CCCCA----------CTGAAAAGTGCAGGCA-------ACAGCTCCGAGTTTTGTTTTTTAAGT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439108 75 + 159171411 ------------------CTCTGGGATCC----GCCCC---TCCCACCTCGG---CCCCA---------CCCGGAAAGTGCAGGCA-------TCACCTCCCAGTTTTGTTTTTTAAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556257 73 + 16356641 --------------------ccgggagcc----gcccc---TCCCACCTCGG---CCCCA---------CCCAGAAAGTGCGGGCC-------ACAGCTCCCAGTGTTGTTTTTGAAGT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1963794 72 + 11732439 --------------------CCCGCCCCC----GCCCC----CCCACCTCGG---CCCCA---------CCCGGAAAGTGCAGGCA-------ACGGCTCCCAGTTTTGTTTTTTAAGT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177635 87 + 22939663 CAGAGGAA-----ACTGGCTCTGGGAGCC----ATCCG---TCCCCTAACAG---CCCCA----------CAGGAAAGTGCTGGCA-------ATAGGTCCAAGTTTTGTTTTTTAAGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181120022 90 + 182113224 CAGAGGAA--------------AGCCATTCTGGAGCCC---TGCCACTCCAG---CAGCT---------TCCAGAAAGTGCCGCCATGGCTCCTCCGTTCCACGGTTTGTTTTTTAAGT i mm10.chr2 I 12 C 0 s dasNov3.JH567899 122340 84 + 555560 ------------------------CAGCC----ACCCCAAAACCCTCAGCAGACACCCCAGCTCTGGGAGCCGAGAAGTGCCGGTG-------CCAGCCCCAGGTTTTGCTTCCCAAGT i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 403017 60 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I a score=2004671.000000 s hg38.chr20_KI270871v1_alt 41909 199 + 58661 TTTTGGAACAGATGGCACAGATGGCGCTGCCGGGGGCGGCCGGTGCAGGGGAGGCAGAGAGACGGACGTGCGAGAAG----------------------AGCCTTG---------------------------G---------AGGAGGGAGGAGGCGGCACGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACG----CAAAGATCCC-----------------GGTGCCTC------G-----GCCGTGGCTCCAGGCCCCAGGACAGACCAGGGAAGAAACCTCCAAAC s panTro5.chr20 65617628 199 + 66533130 TTTTAGAACAGATGGCACAGATGGCGCTGCCGGGGGCGGCCGGTGCAGGGGAGGCAGAGAGACGGACGTGCGAGAAG----------------------AGCCTTG---------------------------G---------AGGAGGGAGGAGGCGGCACGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACG----CAAAGATCCC-----------------GGTGCCTC------G-----GCCGTGGCTCCAGGCCCCAGGACAGACCAGGGAAGAAACCTCCAAAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61377862 199 + 62195757 TTTTAGAACAGATGGCACAGATGGCGCTGCCAGGGGCGGCCGGTGCAGGGGAGGCAGAGAGACGGACGTGCGAGAAG----------------------AGCCTTG---------------------------G---------AGGAGGGAGGAGGCGGCACGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGAACG----CAAAGATCCC-----------------GGTGCCTC------G-----GCCGTGGCTCCAGGCCCCAGGACAGACCAGGGAAGAAACCTCCAAAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792411 199 - 1017659 TTTTGGAACAGATGGCACAGATGGCGCTGCCGGGGGCGGCCGGTGCAGGGGAGGCAGAGAGACGGACGTGCGAGAAG----------------------AGACTTG---------------------------G---------AGGAGGGAGGAGGCGGCACGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACG----CAAAGATCCC-----------------GGTGCCTC------G-----GCCGTGGCTCCAGGCCCCAGGACAGACCAGGGAAGAAAACTCCAAAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281192 199 - 110113093 TTTTGGAACAGATGGCACAGATGGTGCTGCCGGGGGCGGCCGGTGCAGAGGAGGCAGAGAGACGGACGCGCGAGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGCGGCACGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACG----CAAAGATCCC-----------------GGTGCCTC------G-----GCCGTGGCTCCAGGCCCCGGGACAGACCAGGGAAGAAACCTCCAAAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001320 199 - 92844088 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACACATGAGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGCGGCATGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGATCCC-----------------GCTGCCTC------G-----GCCATGGCTCCAGGCCCCGGGAGAGACCAGGGAAGAAACCTCCAAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650576 199 + 96509753 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACACATGAGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGCGGCATGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGATCCC-----------------GCTGCCTC------G-----GCCATGGCTCCAGGCCCCGGGAGAGACCAGGGAAGAAACCTCTAAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101637 199 - 16982598 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACACATGAGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGCGGCATGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGATCCC-----------------GCTGCCTC------G-----GCCATGGCTCCAGGCCCCGGGAGAGACCAGGGAAGAAACCTCCAAAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950006 199 - 3785965 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACACATGAGAAG----------------------AGCTGCG---------------------------G---------AGGAGGGAGGAGGCGGCATGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGATCCC-----------------GCTGCCTC------G-----GCCATGGCTCCAGGCTCCGGGACAGACCAGGGAAGAAACCTCCAAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617782 199 - 90373283 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACACATGAGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGCGGCATGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGATCCC-----------------GCTGCCTC------A-----GCCATGGCTCCAGGCCCCGGGACAGACCAGGGAAGAAACCTCCAAAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501060 199 + 6149316 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACACATGAGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGCGGCATGGGG-----TGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGATCCC-----------------GCTGCCTC------G-----GCCATGGCTCCAGGCTCCGGGACAGACCAGGGAAGAAACCTCCAAAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729201 199 - 5823884 TTTTGGAACAGATGGCACAGATGGCGTCGCCGGGGGCGGCCAGTGCAGGGGAGGCAGAGAGACGGACGCATGAGAAG----------------------AGCCGCA---------------------------G---------AGGAGGGAGGAGGTGGCATGGGG-----GGCGT--CTGGGCCCGTCT-----------GGGGGACA----CAAAGGCCCC-----------------GCTGCCTT------G-----GCCATGGCTCCAGGCCCCGGGACAGAACAGGGAAGAAACCTCCAAAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439183 197 + 159171411 TTTTGGAACAGATGGCACAGATGGCACTGCTGGGGGCAGCCGGTGCAGGGGAGGCAAAAAGATGGACGCCCGGGAAG----------------------AGCCGCA---------------------------G---------AGGAGGGAGGAGGTAGC-TCAGG-----TGCAT--CTGGGCCCGTCT-----------GGGGGACG----AACAGATCCC-----------------AGTGCCTC------G-----GCCATGGCCTCAGGCCCCAGA-CAGACCAGGGAAGAAGCCTCCGAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556330 196 + 16356641 TTTTGGAACAGACGGCACAGATGGCACCGCGGGGGGCAGCCGGTGCAGGAAAGGCAGAGAGACCGACGCCCGGGAGG----------------------AGCCGCG---------------------------G---------GGGAGGGAGGAGGTGGC-TCAGG-----TGCAC--CTGGGCCCGTGT-----------GGGGGACG----AAATGATCCC-----------------GGTGCCGC------G-----GCCACGGCCTCAGGCCCCAGG-GACACCAGGGAAGAAGCCTCCGAA- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 403077 197 + 1231380 TTTTGGAACAGATGGCACAGATGGCGCCACCGGAGGCAGCCGGTGCACGAGAGGCATAGAGACGGACGCCCAAGAAG----------------------ACCCGCG---------------------------G---------GGGAGGGAAGAGGTGGC-TCGGG-----TGCAT--CTGGGCCTGTGC-----------GGGGGACG----AAAAGATCCC-----------------AGTGCCTC------A-----GCCATGGCCTCAGGCCCCAGG-CAAACCAGGGAAGAAGCCTCCAGAC i cebCap1.NW_016107870v1 I 60 I 9 s aotNan1.NW_018500483v1 1963866 197 + 11732439 TTTTGGAACAGATGGCACAGATGGCGCCGCCGGGGGCGGCCGGTGCAGGGGAGGCAGAGAGACGGACGCCCGGGAAG----------------------AGCCGCG---------------------------G---------AGGAGGGAGGAGGTGGC-TCGGG-----TGCAT--CTGGGCCCGTCT-----------GGTGGACG----AAAAGATCCC-----------------AGTGCCTC------G-----GCCATGGCCTCAGGCCCCAGA-CAGACCAGGGAAGAAGCCTCCGATC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177722 242 + 22939663 TTTCGGAACAGATGGTACAGATGGTTGGGCCGGGGGTGGCTGGTGCTGTGGAGGCAGAGAGACCGGCGGGCAGGAAG----------------------GGATTCG---------------------------GAAGAC---CAGGAGGCCGGGGGCGCAGCAGGGCTGGCTGCAT-ACTGGGGGCTCCTCCCCAGGACAAGGGGGATG----CATGAATCCCAGGACAGAGCAGGACAGAGTGCCCCTCACATG-----GTTAGGGCTCCCACCCCAAGG-CACAGCAGAGAAGTG--CTTGAGAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181120112 234 + 182113224 TTTCAGAGCAGACAGAGCAGATGGCCCCCTCCAGGAAGACTGGTGCAGGGGAGGCTGCAAG--GGACACGCAGGAAG----------------------AGTAGCGCCCACGCTGCTCCTGGAAGCTCAGAGAG---------AGGAAGGAAAGAGCTCCTCAGGC-----TGTGTGACAGGGCTCCTCC---CCAGGCGGGAGGGAGGCCTCCAAGGAGAGC-----------------GTAGGCT-------A-----GCCACACCTCCAGGCCCAAGACAACAACAGTCTGGCCATCTGTC--- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 122424 210 + 555560 TTTCGGAACAGATGGCAC------CACCGGGGGAGCCGTCGGGGGCAGGGGGG----AGGGACGGCCGC-CGAGGAGCGCGACGCGTGGTGGCCACGCCAGCCCCG---------------------------GCCTCCAGGCGGCAAGGACGGGCGGGGACGGGA-----GGCAG--CGGGGGACCGCC-----------GGCCTGCC----C---GAGCCG-----------------AGCGTCTG------GAGTGAGCCCTGGGCCCTGGAGCCAGG-CTTGCCGGGGAGGGA---------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=37778.000000 s hg38.chr20_KI270871v1_alt 42108 19 + 58661 TGCGGATAGTTCC--------CAAACG s panTro5.chr20 65617827 19 + 66533130 TGCGGATAGTTCC--------CAAACG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378061 19 + 62195757 TGCGGATAGTTCC--------CAAACG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792610 19 - 1017659 TGTGGATAGTTCC--------CAAACG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281391 19 - 110113093 TGCAGATCGTTCC--------CAAACG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001519 16 - 92844088 T---GATCGCTCC--------CGAATA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650775 16 + 96509753 T---GATCGCTCC--------CGAATA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101836 16 - 16982598 T---GATCGCTCC--------CGAATA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950205 16 - 3785965 T---GATCGCTCC--------CGAATG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617981 16 - 90373283 T---GATTGCTCC--------TGAATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501259 16 + 6149316 T---GATCGCTCC--------CGAATG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729400 16 - 5823884 T---GATGGCTCC--------CGAATG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439380 19 + 159171411 TGCACACAGTCCC--------GAATCG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556526 18 + 16356641 -GGGCACAGTCCC--------AAATCG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1964063 19 + 11732439 TGCACACAGTCCC--------GAATCG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22177964 17 + 22939663 --AGCATCATCCA--------TAATCT i otoGar3.GL873542 C 0 I 8 s mm10.chr2 181120346 27 + 182113224 TGTAAACACCTCAGTGACTGGCAACTG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 122634 16 + 555560 ---GAGGAGGGCC--------AGAATC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 403274 9 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I a score=538336.000000 s hg38.chr20_KI270871v1_alt 42127 59 + 58661 CACTGGCCAGCCATCCGGT-----CGGCC------GAACCGTGGGGAAGACAC----------AGGGGCTTC----------CAGGCCTC s panTro5.chr20 65617846 59 + 66533130 CACTGGCCAGCCATCCGGT-----CGGCC------GAACCGTGGGGAAGACAC----------AGGGGCTTC----------CAGGCCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378080 59 + 62195757 CACTGGCCAGCCATCCGGT-----CGGCC------GAACCGTGGGGAAGACAC----------AGGGGCTTC----------CAGGCCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792629 59 - 1017659 CACTGGCCAGCCATCCGGT-----CGGCC------GAACCGTGGGGAAGACAC----------AGGGGCTTC----------CAGGCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281410 59 - 110113093 CGCTGGCCAGCCGTCCAGT-----CGGCC------GAACGGTGGGGAAGACAC----------AGGGGCTTC----------CAGGCCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001535 59 - 92844088 CGCTGGCCAGACATCTGGT-----CGGCT------GAACTGTGAGGAAGACAC----------AGGGGCCTC----------CAGGCCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650791 59 + 96509753 CGCTGGCCAGACATCTGGT-----CGGCT------GAACTGTGAGGAAGACAC----------AGGGGCCTC----------CAGGCCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101852 59 - 16982598 CGCTGGCCAGACATCTGGT-----CGGCT------GAACTGTGAGGAAGACAC----------AGGGGCCTC----------CAGGCCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950221 59 - 3785965 CGCTGGCCAGACATCCGGT-----CAGCT------GAACTGTGAGGAAGACAT----------AGGGGCCTC----------CAGGCCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89617997 59 - 90373283 CACTGGCCAGACATCCGGT-----CAGCT------GAACTGTGAGGAAGACAC----------AGGGGCCCT----------CAGGCCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501275 59 + 6149316 CGCTGGCCAGACATCCGGT-----CAGCT------GAACTGTGAGGAAGACAT----------AGGGGCCTC----------CAGGCCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729416 59 - 5823884 GACTGGCCAGACATCCGGT-----CGGCT------GAACTGTGGGGAAGACAC----------AGGGGCCTC----------CAGGCCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439399 57 + 159171411 --CTGCCCAGCCGCCCAAT-----CGGCT------GAGCTGTGAGGAAGACAC----------AGGAGTTTC----------CAGGCCTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556544 57 + 16356641 --CTGCCCCGCCACCCAAT-----CGGCT------GAGCTGTGGGGAAGACAC----------AGGGGTTTC----------CAGGCCTC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 403283 59 + 1231380 CTCTGCCCAGCCACCCAGT-----CGGCT------GAGCTGTGAGGAAGACAC----------AGGGGTTTC----------CAGGCCTC i cebCap1.NW_016107870v1 I 9 I 10 s aotNan1.NW_018500483v1 1964082 57 + 11732439 --CTGCCCAGCCACCCAAT-----CGGCT------GAGCTGTGGGGAAGACAC----------AGGGGTTTC----------CAGACCTC i aotNan1.NW_018500483v1 C 0 I 10 s otoGar3.GL873542 22177989 50 + 22939663 CACTG-CCACTGCTCTAGC-----TG-------------CATGTGGAAAAC-T----------GACAACTTA----------CAGACCTC i otoGar3.GL873542 I 8 I 1 s mm10.chr2 181120373 80 + 182113224 TCCTTCCAGAACATCCCATACTCACGACCACTTTAGAGATGAAGAGAGGCCAC----------TGGGGTTTTAGAAGGCTGGCAGGACTC i mm10.chr2 C 0 I 2 s dasNov3.JH567899 122650 66 + 555560 --------AAGTCCCCAGC-----CAGCT------GAGCGGGCAGGAGGGCTCTTCCCGCTGGAGGCGCCTCTGCCC-----CGGGTTTC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=60532.000000 s hg38.chr20_KI270871v1_alt 42186 15 + 58661 CGCCTACAAACCGTG s panTro5.chr20 65617905 15 + 66533130 CACCCACAAACCGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378139 15 + 62195757 CACCCACAAACCGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792688 15 - 1017659 CACCCACAAACCGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281469 15 - 110113093 CGCCCACACACCGCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001594 15 - 92844088 CGTCCACACACCGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650850 15 + 96509753 CGTCCACACACCGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101911 15 - 16982598 CGTCCACACACCGCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950280 15 - 3785965 CGTCCACACACTGCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618056 15 - 90373283 CGTCCACACACCGCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501334 15 + 6149316 CGTCCACACACCGCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729475 15 - 5823884 CGTCCACACACCGCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439456 6 + 159171411 --CCCACA------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556601 10 + 16356641 --CCCACACGGC--- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22178040 15 + 22939663 TCCCCACCAAAGGCA i otoGar3.GL873542 I 1 I 32 s mm10.chr2 181120455 14 + 182113224 TCACTTCCTACCAT- i mm10.chr2 I 2 C 0 s dasNov3.JH567899 122716 15 + 555560 CTCCCATGTCCCAGG i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1964139 10 + 11732439 I e cebCap1.NW_016107870v1 403342 10 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I a score=1310612.000000 s hg38.chr20_KI270871v1_alt 42201 136 + 58661 GTGTCCCCAAGACATCCACACtc-atgcccatcttagagaaggggaaactgaggctcactgaggcaggtg------aGGGCCTCTGCC-----------TC------------TGAACCAGGGG------AGGGA-------------GAGGGC-----GGCAGGAGACCCCT--------------------GATGGCA-TCCCCCAGGC s panTro5.chr20 65617920 136 + 66533130 GTGTCCCCAAGAcatccagactc-atgcccatcttagagaaggggaaactgaggctcactgaggcaggtg------aGGGCCTCTGCC-----------TC------------TGAACCAGGGG------AGGGA-------------GAGGGC-----GGCAGGAGACCCCT--------------------GATGGCA-TCCCCCAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378154 136 + 62195757 GTGTCCCCAAGAcatccagactc-atgcccatcttagagaaggggaaactgaggctcactgaggcaggtg------aGGGCCTCTGCC-----------TC------------TGAACCAGGGG------AGGGA-------------GAGGGC-----GGCAGGAGACCCCT--------------------GATGGCA-TCCCCCAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792703 136 - 1017659 GTGTCCCCAAGACATCCACACtc-atgcccatcttagagaaggggaaactgaggctcactgaggcaggtg------aGGGCCTCTGCC-----------TC------------TGAACCAGGGG------AGGGA-------------GAGGGC-----GGCAGGAGACCCCT--------------------GATGGCA-TCCCCCAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281484 136 - 110113093 GAGTCCCCAAGACATCCACACtc-atgcccatcttagagaaggggaaactgaggctcactgaggCGGGTG------AGGGCCTCTGCC-----------TC------------TGAACCAGGGG------AGGGA-------------GAGGGC-----GGTAGGAGACCCCT--------------------GATGGCA-TCCCCCAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001609 131 - 92844088 GTGTCCCCAAAACATCCACACtc-atgcccatcttagagaacaggaaactgaagctcaccgaggCGGGTG------AGGGCCTCTGTC-----------TC------------TGAACCAG----------GGGA-------------GAGGGC-----GGCCGGAGACCCC---------------------GATGGCA-TCCCCCAGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650865 131 + 96509753 GTGTCCCCAAAACATCCACACtc-atgcccatcttagagaacaggaaactgaagctcaccgaggCGGGTG------AGGGCCTCTGTC-----------TC------------TGAACCAG----------GGGA-------------GAGGGC-----GGCCAGAGACCCC---------------------GATGGCA-TCCCCCAGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16101926 131 - 16982598 GTGTCCCCAAAACATCCACACTC-ATGCCCATCTTAGAGAACAGGATACTGAAGCTCACCGAGGCGGGTG------AGGGCCTCTGTC-----------TC------------TGAACCAG----------GGGA-------------GAGGGC-----GGCCGGAGACCCC---------------------GATGGCA-TCCCCCAGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950295 131 - 3785965 GTGTCCCCAAGACATCCACACTC-ACGCCCATCTTAGAGAACAGGAAACTGAAGCTCACCGAGGCGGGTG------AGGGCCTCTGTC-----------TC------------TGAACCAG----------GGGA-------------GAGGGC-----GGCAGGAGACCCC---------------------GATGGCA-TCCCCCAGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618071 131 - 90373283 GTGTCCCCAGGACATCCGCACTC-ACGCTCATCTTAGAGAACAGGAAACTGAAGCTCACCGAGGCGGGTG------AGGGCCTCTGTC-----------TC------------TGAACCAG----------GGGA-------------GAGGGC-----GGCAGGAGACCCC---------------------GATGGCA-TCCCCCAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501349 131 + 6149316 GTGTCCCCAAGACATCCACACTC-ACGCCCATCTTAGAGAACAGGAAACTGAAGCTCACCGAGGCGGGTG------AGGGCCTCTGTC-----------TC------------TGAACCAG----------GGGA-------------AAGGGC-----GGCAGGAGACCCC---------------------GATGGCA-TCCCCCAGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729490 132 - 5823884 GTGTCCCCAAGACATCCACACTCAACGCCCATCTTAGAGGATGGGAAACTGAAGCTCACGGAGGCGGGTG------AGGGCCTCTGCC-----------TC------------TGAACCAT----------GGGA-------------GAGGGC-----GGCAGGAGACCCC---------------------GATGGCA-TCCCCCAGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439462 131 + 159171411 ------CCAAGACACCCACACTC-ACGcccatcttagagaaggggaaactgaggctcactgaggtgggtg------aGGGGCTCTGCC-----------TC------------TGACGCAGGGG------AGGGA-------------GAGGGC-----AGCAGGAGACCCCT--------------------GATGGCACCCCTCTAGGC i calJac3.chr5 C 0 I 6 s saiBol1.JH378156 15556611 136 + 16356641 GTGTCCCcaagacacgcacactc-acgcccaccttacagaaagagaaactgaggctcactgaggtgggtg------aGGGGCTCTGCC-----------TC------------TGACGCAGGGG------AGGGA-------------GAGGGC-----GGCAGGAGACCCTT--------------------GATGGCA-CCCTCCAGGC i saiBol1.JH378156 C 0 I 6 s cebCap1.NW_016107870v1 403352 136 + 1231380 ATGCCCCCAAGACACCCACACTC-ACACCCATCTTAGATAAGGGGAAACTGAGGCTCACTCAGGTGGGTG------AGGGTCTCTGCC-----------TC------------TGACCCAGGGG------AGGGA-------------GAGGGC-----GGCAGGAGACCCCT--------------------GATGGCA-CCCCCCAGGC i cebCap1.NW_016107870v1 I 10 I 648 s aotNan1.NW_018500483v1 1964149 136 + 11732439 GTGTCCCCAAGACATCCACACTC-ACAcccatcttagagaaggggaaactgaggctcactgaggtgggtg------aGGGGCTCTGCC-----------TC------------TGACCCAGGGG------AGGGA-------------GAGGGT-----GGCAGGAGACCCCC--------------------GATGGCA-CCCCCCAGGC i aotNan1.NW_018500483v1 I 10 I 6 s otoGar3.GL873542 22178087 144 + 22939663 GCATCCCTGGGGTGTCCACACtc-atgcccattttagagatggagaaactgagatccaatgaggtAGGCA------GGGGACCCTGCCACTTTCTGCTTTC------------TGTCCCTGGAG-------GGGG-------------CAGGAA-----GACAGGCTATCCCC--------------------ACTGGCC-TCACTAAG-- i otoGar3.GL873542 I 32 C 0 s mm10.chr2 181120469 166 + 182113224 GTATCCTCAGGAGGTGTACA-GC-ATGCTCCCCC----------AGCATCTAGCCTCCATGAGGTGGGCATTTCACAGGCTCGCAGCC-----------AC------------GAGCCCCAGCATA----AGGGACAAATAACAACAGGAGAAC-----AGGAGGTGACCCTCAGATCTGTTCCCTACTCAAAGCTAGCC-TCCCCCAGGC i mm10.chr2 C 0 C 0 s dasNov3.JH567899 122731 144 + 555560 CTGTCC----------TACGCTC-tccccca-cttacagatggggaaactgaggctcg-ggaggttGGC-------AGGGGCTCAGAC-----------GCCAAGAGCCTGGATGCATCAGGCTCGCCCCAGGGC-------------GGGGGCTGGAGGACAGGGAGCCCCT--------------------GCTGGCG---GCCCAGGC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=6734.000000 s hg38.chr20_KI270871v1_alt 42337 1 + 58661 C s panTro5.chr20 65618056 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378290 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792839 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281620 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001740 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650996 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102057 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950426 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618202 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501480 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729622 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439599 1 + 159171411 T i calJac3.chr5 I 6 C 0 s saiBol1.JH378156 15556753 1 + 16356641 T i saiBol1.JH378156 I 6 C 0 s aotNan1.NW_018500483v1 1964291 1 + 11732439 T i aotNan1.NW_018500483v1 I 6 C 0 s mm10.chr2 181120635 1 + 182113224 T i mm10.chr2 C 0 I 299 s dasNov3.JH567899 122875 1 + 555560 C i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 403488 648 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178231 0 + 22939663 C a score=1226820.000000 s hg38.chr20_KI270871v1_alt 42338 179 + 58661 ----TCGGGAGAGGAGGCT--CCCCGGGAACACTGGGACACACTCCCTGCCCATGTGGCCTCAGGGTCCCAGGCACGACGAGCGTCCAAATGTGG--------------------------GACACTCCCTGAGGGCCAGCTGCCAGAGGCCTCTCGGGAC-GGGGCCATCACCAC-CTCAGA--------------------------------CCCAGGCCCACAGTGTGGGTACAGCCC----CTC--- s panTro5.chr20 65618057 179 + 66533130 ----TCGGGAGAGGAGGCT--CCCCGGGAACACTGGGACACACTCCCTGCCCATGTGGCCTCAGGGTCCTAGGCACAACGAGCGTCCAAATGTGG--------------------------GACACTCCCTGAGGGCCAGCTGCCAGAGGCCTCTCGGGAC-GGGGCCATCACCAC-CTCAGA--------------------------------CCCAGGCCCACAGTGAGGGTACAGCCC----CTC--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378291 179 + 62195757 ----TCGGGAGAGGAGGCT--CCCCGGGAACACTGGGACACACTCCCTGCCCATGTGGCCTCAGGGTCCTAGGCACAACGAGCGTCCAAATGTGG--------------------------GACACTCCCTGAGGGCCAGCTGCCAGAGGCCTCTCGGGAC-GGGGCCATCACCAC-CTCAGA--------------------------------CCCAGGCCCACAGTGAGGGTACAGCCC----CTC--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 792840 179 - 1017659 ----TCGGGAGAGGAGGCT--CCCCGGGAACACTGGGACACACTCCCTGCCCGTGTGGCCTCAGGGTCCCAGGCACGACGAGCGTCCAAATGTGG--------------------------GACACTCCCTGAGGGCCAGCTGCCAGAGGCCTCCCGGGAC-GGGGCCATCACCAC-CTCAGA--------------------------------CCCAGGCCCACAGTGTGGGTACAGCCC----CTC--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281621 179 - 110113093 ----TCGGGAGAGGAGGCT--CCCCGGGAACACTGGGACCCACTCCCTGCCCATGCAGCCTCAGGGTCCCAGGCACGACGAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCCACCAGGGGCCTCCCGGGAC-GGGGCCATCACCAC-CTCGGA--------------------------------CCCAGGCCCACGGTGTGGGTACAGCCC----CTC--- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001741 177 - 92844088 ----TCAGGAGAGGTGGCT---CCCGGGAACGCTGGGACATACTCCCTGCCCATGTGGCCTCGGGGTCC-GGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCCGCCAGGGGCCTCCCAGGGC-AGGGCCATCACCCC-CTCAGA--------------------------------GCAAGGCCCACAGCGTGGGTACAGCCC----CTC--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95650997 177 + 96509753 ----TCAGGAGAGGTGGCT---CCCGGGAACGCTGGGACATACTCCCTGCCCATGTGGCCTCGGGGTCC-GGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCCGCCAGGGGCCTCCCAGGGC-AGGGCCATCACCCC-CTCAGA--------------------------------GCAAGGCCCACAGCGTGGGTACAGCCC----CTC--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102058 177 - 16982598 ----TCAGGAGAGGTGGCT---CCCGGGAACGCTGGGACATACTCCCTGCCCATGTGGCCTCGGGGTCC-AGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCCGCCAGGGGCCTCCCAGGGC-AGGGCCATCACCCC-CTCAGA--------------------------------GCAAGGCCCACAGCATGGGTACAGCCC----CTC--- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950427 176 - 3785965 ----TCAGGAGAGGTGGCT---CCCGGGAACGCTGGGACATACTCCCTGCCCATGTGGCCTCGGGGTCC-CGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTG-GGGCCAGCCACCAGGGGCCTCCCAGAGC-AGGGCCATCACCCC-CTCAGA--------------------------------GCAAGGCCCACAGCGTGGGTACAGCCC----CTC--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618203 177 - 90373283 ----TCAGGAGAGGTGGCT---CCCGGGAACGCTGGGACATACTCCCTGCCCATGTGGCCTCGGGGTCC-AGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCTGCCAGGGGCCTCCCAGGGC-AGGGCCATCACCCC-CTCAGA--------------------------------CCAAGGCCCACAGCGTGGGTACAGCCC----CTC--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501481 177 + 6149316 ----TCAGGAGAGGTGGCT---CCCGGGAACGCTGGGACATACTCCCTGCCCATGTGGCCTCGGGGTCC-AGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCCACCAGGGGCCTCCCAGGGC-AGGGCCATCACCCC-CTCAGA--------------------------------GCAAGGCCCACAGCGTGGGTACAGCCC----CTC--- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729623 175 - 5823884 ----TCGGGAGAGGTGGCT---CCCGGGAACGCTGGGAC--ACTCCCTGCCCATGTGGCCTCAGGGTCC-GGGCACGGCAAGCGTCCAGATGTGG--------------------------GACACTCCCTGAGGGCCAGCCACCAGGGGCCTCCCAGGGC-GGGGCCATCACCCC-CTCAGA--------------------------------CCAAGGCCCACAGTGTGGGTACAGCCC----CTC--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439600 174 + 159171411 ----TCAAGAGGGGAGGCT--TCCCAGGAACGCTGGGACGAACTCCCAGGCTATGCTTTCTCAGAGTCCCAGGCAC----AGCATCCTGACGTGGG----------------------ACAGACACTCCCTAAGAG-------CCAGGGACATCCCAGGGTGGGGGCCATCACCACTCTCAGA--------------------------------CCCAGGCCCATGGTGTGGGAGCAGCCC----CTC--- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556754 161 + 16356641 ----TCAGGAGGGGAGGCT--CCCCAGGAACGC-GGGGCAAACTCCCGGGCTGCGTTTTCTCAGGGTCCCAGGCAC----AGCGTCCTGATGTGGG----------------------ACAGACACTCCCTAAGAG-------CCAGGGACATCCCGGGGTGGGGGCCATCACCACCCTCAGA--------------------------------CCCAGGCCCATGGCGTGG------------------- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1964292 174 + 11732439 ----TCAAGAGGGGAGGCT--CCCCAGGAACACTGGGAAGAACTCCCAGGCTACGTTTTCTCAGGGTCCCAGGCAC----AGCGTCCTGATGTGGG----------------------ACAGACACTCCCTAAGAG-------CCAGGGACATCCCGGGGTGGGGGCCATCACCACCCTCAGA--------------------------------CCCAGGCCCATGGTGTGGGAGCAGCCC----CTC--- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22178231 153 + 22939663 ------------------------CATGGCCAGGGGGGAACACTCCCTGCCCCTCAGGCCTCAAGGTCT-------GGCAAGGGGTCCTTGGTAG-----------------------CCTAAGGCCCCTCCAGGTTGAGCTTCTAGAG-CTTCCAGGGGCCAGGCTCATCACC---CTCAGA--------------------------------CCA--GCGCATAGATCAAGTACAGCCA----CAG--- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 122876 237 + 555560 TCGGGCATGGGGAGGGGCTCTCCCCAGGA----TGGGG---GCTCTTCGCCCCCA--GCCCCCAGGTCC----CACCGTGGGGTTCCACAGCAGGAGCCCCTTCCCTCGCACCCCGCCCCTGACAGACTCGGGGCGCAGGCCGCCCAGGAGGCTCCTCGCC-TACGCCCGCATCCC-TTCGGGGAGGACGGAGCGGTGCCTGCTGGGAGCAGCCCCCAGGGCCCCCCGCGGCCCTCCAGCCTGGCGCTCACC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181120636 299 + 182113224 I e cebCap1.NW_016107870v1 403488 648 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I a score=304425.000000 s hg38.chr20_KI270871v1_alt 42517 40 + 58661 CTGCACTAA-GCTGGGGG------------ACACAG-------------------CCCA--CCACGGGGCACTC s panTro5.chr20 65618236 40 + 66533130 CTGCACTAA-GCTGGGGA------------ACACAG-------------------CGCA--CCGCGGGGCACTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378470 40 + 62195757 CTGCACTAA-GCTGGGGA------------ACACAG-------------------CGCA--CCGCGGGGCACTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793019 40 - 1017659 CTGCACTAA-GCAGGGGA------------ACACAG-------------------CCCA--CCGCGGGGCACTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281800 40 - 110113093 CTGCACTAT-GCTGGGGA------------ACACAG-------------------CCCA--CCGCAGGGCACTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001918 40 - 92844088 CCATGCTCA-GCCGGGGA------------ATACAG-------------------CCCA--CCACAGGGCACTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651174 40 + 96509753 CCATGCTCA-GCCGGGGA------------ATACAG-------------------CCCA--CCACAGGGCACTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102235 40 - 16982598 CCATGCTCA-GCCGGGGA------------ATACAG-------------------CCCA--CCACAGGGCACTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950603 40 - 3785965 CCATGCTCA-GCTGGGGA------------ATACAG-------------------CCCA--CCACAGGGCACTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618380 40 - 90373283 CCATGCTAA-GCCGGGGA------------ATACAG-------------------CCCA--CCACGGGGCACTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501658 40 + 6149316 CCATGCTCA-GCCGGGGA------------ATACAG-------------------CCCA--CCACAGGGCACTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729798 40 - 5823884 CCACACTAA-GCCGGGGA------------ATACAG-------------------CCCA--CCACGGGGCACTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57439774 40 + 159171411 CCGAGCTAA-GCCAGGGA------------ATGCAG-------------------CCCA--CCATGAGGCACTC i calJac3.chr5 C 0 I 402 s saiBol1.JH378156 15556915 38 + 16356641 --GGGCTAA-GCCGGGGA------------ACGCAG-------------------CCCA--CCGTGACACACTT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1964466 40 + 11732439 CCGAGCTAA-GCCGGGGA------------ACGCAG-------------------CCCA--CCATGAGGCACTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22178384 38 + 22939663 TCAGACTAA-GCAGGGGG-------------CACGG-------------------CCCC--CAGTGGGCCTTT- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181120935 61 + 182113224 CCAGACGAA-ACTGGGGG------------ATGTAGGAGAAGCAGTTTTAGGGGCCCCAGGCCATGAGATATCC i mm10.chr2 I 299 I 2 s dasNov3.JH567899 123113 48 + 555560 CTGCCCTGACGCCCGGGAGGGCCCTGGCCAGTGCAG-------------------CCCT--CCA-----CACCC i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 403488 648 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I a score=240526.000000 s hg38.chr20_KI270871v1_alt 42557 31 + 58661 AGCTGAGGTCTCGCTGGCTCGGCAAGGGCTG s panTro5.chr20 65618276 31 + 66533130 AGCTGAGGTCTCGCTGGCTCGGCAAGGGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378510 31 + 62195757 AGCTGAGGTCTCGCTGGCTCGGCAAGGGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793059 31 - 1017659 AGCTGAGGTCTCGCTGGCTCGGCAAGGGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281840 31 - 110113093 AGCTGGGGTCCCACTGGCTCTGCAAGGGCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001958 31 - 92844088 AGCTGGGGTCTCGCTGGCTCGGCAAGGGCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651214 31 + 96509753 AGCTGGGGTCTCGCTGGCTCGGCAAGGGCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102275 31 - 16982598 AGCTGGGGTCTTGCTGGCTCGGCAAGGGCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950643 31 - 3785965 AGCTGGGGTCTCGCTGGCTCGGCAAGGGCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618420 31 - 90373283 AGCTGGGGTCTCGCTGGCTCAGCAAGGGCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501698 31 + 6149316 AGCTGGGGTCTCGCTGGCTCGGCAAGGGCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729838 31 - 5823884 AGCTGGGGTCTCGCTGGCTCGGCAAGGGCTG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15556953 31 + 16356641 GGCTGGGGTCTCGCTGGCTCCACAGGGGCAG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1964506 31 + 11732439 GGCTGGGGTCTCGCTGGCTCCACAGGGGCAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22178422 29 + 22939663 GGTGAAGGTCACGCT-GCCCAGCAGGACCA- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181120998 24 + 182113224 AGCTCTGG-------AGCTTGGCCACATCTC i mm10.chr2 I 2 C 0 s dasNov3.JH567899 123161 28 + 555560 GGCTGGGAGC---CTGAGCCGCGAGGCTCTG i dasNov3.JH567899 C 0 C 0 e cebCap1.NW_016107870v1 403488 648 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e calJac3.chr5 57439814 402 + 159171411 I a score=61372.000000 s hg38.chr20_KI270871v1_alt 42588 6 + 58661 CCCGCC- s panTro5.chr20 65618307 6 + 66533130 CCCGCC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378541 6 + 62195757 CCCGCC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793090 5 - 1017659 -CCGCC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281871 6 - 110113093 CCCGCC- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001989 6 - 92844088 CCCACC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651245 6 + 96509753 CCCACC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102306 6 - 16982598 CCCACC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950674 6 - 3785965 CCTACC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618451 6 - 90373283 CCCGCC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501729 6 + 6149316 CCTACC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729869 6 - 5823884 CCCGCC- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440216 6 + 159171411 CCCACC- i calJac3.chr5 I 402 C 0 s saiBol1.JH378156 15556984 6 + 16356641 CCCGCC- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 404136 6 + 1231380 CCCACC- i cebCap1.NW_016107870v1 I 648 C 0 s aotNan1.NW_018500483v1 1964537 6 + 11732439 CCCGCC- i aotNan1.NW_018500483v1 C 0 I 392 s otoGar3.GL873542 22178451 6 + 22939663 CCTGCC- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121022 6 + 182113224 CCTACA- i mm10.chr2 C 0 I 3 s dasNov3.JH567899 123189 6 + 555560 -CTACGC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=46475.000000 s hg38.chr20_KI270871v1_alt 42594 5 + 58661 CCC--TC s panTro5.chr20 65618313 5 + 66533130 CCC--TC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378547 5 + 62195757 CCC--TC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793095 5 - 1017659 CCC--TC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281877 7 - 110113093 CCCCTCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92001995 5 - 92844088 CCC--TC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651251 5 + 96509753 CCC--TC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102312 5 - 16982598 CCC--TC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950680 5 - 3785965 CCC--TC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618457 5 - 90373283 CCC--TC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501735 5 + 6149316 CCC--TC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729875 5 - 5823884 CCC--TC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440222 5 + 159171411 CCC--TC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15556990 5 + 16356641 TTC--CC i saiBol1.JH378156 C 0 I 3266 s cebCap1.NW_016107870v1 404142 5 + 1231380 CCC--TC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1964935 5 + 11732439 CCC--TC i aotNan1.NW_018500483v1 I 392 C 0 s otoGar3.GL873542 22178457 5 + 22939663 CCC--TC i otoGar3.GL873542 C 0 I 9 s mm10.chr2 181121031 4 + 182113224 CCC--A- i mm10.chr2 I 3 C 0 s dasNov3.JH567899 123195 5 + 555560 CCG--GC i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I a score=73029.000000 s hg38.chr20_KI270871v1_alt 42599 8 + 58661 CTGCCCAG s panTro5.chr20 65618318 8 + 66533130 CTGCCCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378552 8 + 62195757 CTGCCCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793100 8 - 1017659 CTGCCCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281884 8 - 110113093 CCGCCCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002000 8 - 92844088 CTGCCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651256 8 + 96509753 CTGCCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102317 8 - 16982598 CTGCCCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950685 8 - 3785965 CTGCCCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618462 8 - 90373283 CTGCCCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501740 8 + 6149316 CTGCCCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729880 7 - 5823884 CT-CCCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440227 8 + 159171411 CTGTCCAA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 404147 8 + 1231380 CTGCCCAA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1964940 8 + 11732439 CTGCCCAA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22178471 8 + 22939663 GTGCCCAG i otoGar3.GL873542 I 9 I 224 s mm10.chr2 181121035 8 + 182113224 CAGACCAA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 123200 7 + 555560 CTGACCC- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=253940.000000 s hg38.chr20_KI270871v1_alt 42607 31 + 58661 GCAGCGGCCAAGTCTGCA-GGAAAAGAAAGAA s panTro5.chr20 65618326 31 + 66533130 GCAGCGGCCAAGTCTGCA-GGAAAAGAAAGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378560 31 + 62195757 GCAGCGGCCAAGTCTGCA-GGAAAAGAAAGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793108 31 - 1017659 GCAGCGGCCAAGTCTGCA-GGAAAAGAAAGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281892 31 - 110113093 GCAGCGGCCAAGTCTGCA-GGGAAAGAAAGAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002008 31 - 92844088 GCAGTGGCCAAATCTGCA-GGGAAAGAAAAAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651264 31 + 96509753 GCAGTGGCCAAATCTGCA-GGGAAAGAAAAAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102325 31 - 16982598 GCAGTGGCCAAATCTGCA-GGGAAAGAAAAAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950693 31 - 3785965 GCAGTGGCCAAATCTGCA-GGGAAAGAAAAAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618470 31 - 90373283 GCAGTGGCCAAATCTGCA-GGGAAAGAAAAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501748 31 + 6149316 GCAGTGGCCAAATCTGCA-GGGAAAGAAAAAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729887 31 - 5823884 GCAGTGGCCAAATCTGCA-GGGAAAGAAAGAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440235 31 + 159171411 GCAGCAGCCAAGTCTGCA-AGAAAAGAAAGAA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 404155 31 + 1231380 GCAGCAGCCAAGTCTACA-AGAAAAGAAAGAA i cebCap1.NW_016107870v1 C 0 I 2842 s aotNan1.NW_018500483v1 1964948 31 + 11732439 GCAGCAGCCAAGTCTGCA-AGAAAAGAAAGAA i aotNan1.NW_018500483v1 C 0 I 620 s mm10.chr2 181121043 25 + 182113224 GGAGCCTTGAAGCCTT---GGATGAGAA---- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 123207 28 + 555560 GCCGCGTCCCAGCACCCACGGGCGAGCT---- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=53046.000000 s hg38.chr20_KI270871v1_alt 42638 10 + 58661 GAGACTTCCT s panTro5.chr20 65618357 10 + 66533130 GAGACTTCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378591 10 + 62195757 GAGACTTCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793139 10 - 1017659 GAGACTTCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281923 10 - 110113093 GAGACTTCCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002039 10 - 92844088 GAGGTTTCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651295 10 + 96509753 GAGGTTTCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102356 10 - 16982598 GAGGTTTCTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950724 10 - 3785965 GAGGTTTCTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618501 10 - 90373283 GAGGTTTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501779 10 + 6149316 GAGGTTTCTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729918 10 - 5823884 GAGGCTTCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440266 10 + 159171411 AATGCCTCCC i calJac3.chr5 C 0 C 0 s mm10.chr2 181121068 10 + 182113224 GAGCCTTTCT i mm10.chr2 C 0 I 27 s dasNov3.JH567899 123235 6 + 555560 GAGCCC---- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=95915.000000 s hg38.chr20_KI270871v1_alt 42648 21 + 58661 ACGGGAGAA----TGGGGGAGGATG s panTro5.chr20 65618367 21 + 66533130 ACGGGAGAA----TGGGGGAGGATG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378601 21 + 62195757 ACGGGAGAA----TGGGGGAGGATG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793149 21 - 1017659 ACAGGAGAA----TGGgggaggatg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281933 11 - 110113093 AC--------------gggaggatg i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002049 21 - 92844088 acgggagga----cgggggaggatg i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651305 21 + 96509753 ACgggagga----cgggggaggatg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102366 21 - 16982598 acgggagga----cgggggaggatg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950734 21 - 3785965 acgggagga----cgggggaggatg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618511 21 - 90373283 ACGggagga----cgggggaggatg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501789 21 + 6149316 ACgggagga----cgggggaggatg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729928 21 - 5823884 ACaggagga----cgggggaggatg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440276 16 + 159171411 TTAGGAA---------GGGAGGACA i calJac3.chr5 C 0 I 534 s dasNov3.JH567899 123241 21 + 555560 -CCGGGGGAGTCCCGGCAGAGG--- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121078 27 + 182113224 I e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=72579.000000 s hg38.chr20_KI270871v1_alt 42669 11 + 58661 AGgggaggacg-------------- s panTro5.chr20 65618388 11 + 66533130 AGGGGAGGACG-------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378622 11 + 62195757 AGGGGAGGACG-------------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793170 11 - 1017659 aggggaggacg-------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281944 11 - 110113093 aggggaggacg-------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002070 11 - 92844088 aggggaggacg-------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651326 11 + 96509753 aggggaggacg-------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102387 11 - 16982598 aggggaggacg-------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950755 11 - 3785965 aggggaggacg-------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618532 11 - 90373283 aggggaggaag-------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501810 11 + 6149316 aggggaggacg-------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729949 11 - 5823884 aggggaggacg-------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440826 11 + 159171411 aggggaggaca-------------- i calJac3.chr5 I 534 C 0 s dasNov3.JH567899 123262 20 + 555560 -----AGGGCGCCCCCTCAAGCCCC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121078 27 + 182113224 I e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=46622.000000 s hg38.chr20_KI270871v1_alt 42680 12 + 58661 gcgggaagacga s panTro5.chr20 65618399 1 + 66533130 G----------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378633 12 + 62195757 GCGGGAGGACAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793181 12 - 1017659 gcgggaggacga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109281955 12 - 110113093 gcgggaggacga i nomLeu3.chr13 C 0 I 1568 s rheMac8.chr10 92002081 12 - 92844088 gcaggaggacga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651337 12 + 96509753 gcaggaggacga i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102398 12 - 16982598 gcaggaggacga i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950766 12 - 3785965 gcaggaggacga i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618543 12 - 90373283 gcaggacgacga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501821 12 + 6149316 gcaggaggacga i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729960 12 - 5823884 gcaggaggacga i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440837 12 + 159171411 gtggaaggacaa i calJac3.chr5 C 0 C 0 s mm10.chr2 181121105 12 + 182113224 GCCTGTAGGCTC i mm10.chr2 I 27 C 0 s dasNov3.JH567899 123282 10 + 555560 -CCGAGAACCG- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=40550.000000 s hg38.chr20_KI270871v1_alt 42692 9 + 58661 ---tgggaggat s panPan2.chr20 61378645 9 + 62195757 ---TGGGAGGAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793193 9 - 1017659 ---tgggaagac i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92002093 9 - 92844088 ---cgggaggac i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651349 9 + 96509753 ---cgggaggac i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102410 9 - 16982598 ---cgggaggac i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950778 9 - 3785965 ---cgggaggac i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618555 9 - 90373283 ---cgggaggaC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501833 9 + 6149316 ---cgggaggac i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729972 9 - 5823884 ---cgggaggac i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440849 9 + 159171411 ---cgggaggat i calJac3.chr5 C 0 I 2 s mm10.chr2 181121117 9 + 182113224 ---AGAAAGGAC i mm10.chr2 C 0 C 0 s dasNov3.JH567899 123292 9 + 555560 CCCAAGGAG--- i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109281967 1568 - 110113093 I e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e panTro5.chr20 65618400 0 + 66533130 C a score=2523.000000 s hg38.chr20_KI270871v1_alt 42701 12 + 58661 gggaggacggtg s panPan2.chr20 61378654 10 + 62195757 GGGAGGACGG-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793202 2 - 1017659 ga---------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109283535 12 - 110113093 gggaggacggcg i nomLeu3.chr13 I 1568 C 0 s calJac3.chr5 57440860 12 + 159171411 gggaggacagTG i calJac3.chr5 I 2 C 0 s mm10.chr2 181121126 12 + 182113224 AAGAGGCCTGCA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 123301 12 + 555560 GAGAGGCCGAGC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e canFam3.chr24 47089712 1677 + 47698779 I e otoGar3.GL873542 22178479 224 + 22939663 I e manLeu1.NW_012104365v1 5501842 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4729981 0 - 5823884 C e chlSab2.chr2 89618564 0 - 90373283 C e cerAty1.NW_012001373v1 2950787 0 - 3785965 C e macNem1.NW_012014244v1 16102419 0 - 16982598 C e macFas5.chr10 95651358 0 + 96509753 C e rheMac8.chr10 92002102 0 - 92844088 C e panTro5.chr20 65618400 0 + 66533130 C a score=2180.000000 s hg38.chr20_KI270871v1_alt 42713 7 + 58661 ggaggac s nomLeu3.chr13 109283547 7 - 110113093 ggaggac i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57440872 7 + 159171411 ACCGGAT i calJac3.chr5 C 0 C 0 s mm10.chr2 181121138 7 + 182113224 GCAAGAA i mm10.chr2 C 0 I 1 s canFam3.chr24 47091389 7 + 47698779 GGAGGGA i canFam3.chr24 I 1677 I 1 s dasNov3.JH567899 123313 7 + 555560 TCAGGAC i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e otoGar3.GL873542 22178479 224 + 22939663 I e manLeu1.NW_012104365v1 5501842 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4729981 0 - 5823884 C e chlSab2.chr2 89618564 0 - 90373283 C e cerAty1.NW_012001373v1 2950787 0 - 3785965 C e macNem1.NW_012014244v1 16102419 0 - 16982598 C e macFas5.chr10 95651358 0 + 96509753 C e rheMac8.chr10 92002102 0 - 92844088 C e gorGor5.CYUI01015750v1 793204 0 - 1017659 C e panPan2.chr20 61378664 0 + 62195757 C e panTro5.chr20 65618400 0 + 66533130 C a score=-6192.000000 s hg38.chr20_KI270871v1_alt 42720 2 + 58661 --gc s nomLeu3.chr13 109283554 2 - 110113093 --ga i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57440879 2 + 159171411 --GA i calJac3.chr5 C 0 I 19 s otoGar3.GL873542 22178703 1 + 22939663 --G- i otoGar3.GL873542 I 224 C 0 s mm10.chr2 181121146 1 + 182113224 --A- i mm10.chr2 I 1 C 0 s canFam3.chr24 47091397 1 + 47698779 --G- i canFam3.chr24 I 1 C 0 s dasNov3.JH567899 123320 2 + 555560 GC-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e cebCap1.NW_016107870v1 404186 2842 + 1231380 I e manLeu1.NW_012104365v1 5501842 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4729981 0 - 5823884 C e chlSab2.chr2 89618564 0 - 90373283 C e cerAty1.NW_012001373v1 2950787 0 - 3785965 C e macNem1.NW_012014244v1 16102419 0 - 16982598 C e macFas5.chr10 95651358 0 + 96509753 C e rheMac8.chr10 92002102 0 - 92844088 C e gorGor5.CYUI01015750v1 793204 0 - 1017659 C e panPan2.chr20 61378664 0 + 62195757 C e panTro5.chr20 65618400 0 + 66533130 C a score=1179.000000 s hg38.chr20_KI270871v1_alt 42722 1 + 58661 t s nomLeu3.chr13 109283556 1 - 110113093 t i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57440900 1 + 159171411 T i calJac3.chr5 I 19 C 0 s cebCap1.NW_016107870v1 407028 1 + 1231380 T i cebCap1.NW_016107870v1 I 2842 C 0 s otoGar3.GL873542 22178704 1 + 22939663 T i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121147 1 + 182113224 T i mm10.chr2 C 0 C 0 s canFam3.chr24 47091398 1 + 47698779 C i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 123322 0 + 555560 C e aotNan1.NW_018500483v1 1964979 620 + 11732439 I e manLeu1.NW_012104365v1 5501842 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4729981 0 - 5823884 C e chlSab2.chr2 89618564 0 - 90373283 C e cerAty1.NW_012001373v1 2950787 0 - 3785965 C e macNem1.NW_012014244v1 16102419 0 - 16982598 C e macFas5.chr10 95651358 0 + 96509753 C e rheMac8.chr10 92002102 0 - 92844088 C e gorGor5.CYUI01015750v1 793204 0 - 1017659 C e panPan2.chr20 61378664 0 + 62195757 C e panTro5.chr20 65618400 0 + 66533130 C a score=1918240.000000 s hg38.chr20_KI270871v1_alt 42723 226 + 58661 gggagg-----acgatgggaggacCGAGCAGCTTCTCTGCAGCCCAGAATTACAACACAAAGG-GTTTC-GAAGCTAATTATGATAATGGGTTCAACTTCCGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGATAAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCAGGCAAAGAGTCAAGGTGGG---------------GGCAGGGAGGATCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAGGGG s panTro5.chr20 65618400 216 + 66533130 ---------------TGGGAGGACCGGGCAGCTTCTCTGCAGCCCAGAATTACAACACAAAGG-GTTTC-GAAGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGATAAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCAGGCAAAGAGTCAAGGTGGG---------------GGCGGGGAGGATCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378664 216 + 62195757 ---------------TGGGAGGACCGGGCAGCTTCTCTGCAGCCCAGAATTACAACACAAAGG-GTTTC-GAAGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGATAAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCAGGCAAAGAGTCAAGGTGGG---------------GGCGGGGAGGATCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793204 203 - 1017659 ---------------tgggaggacCGGGCAGCTTCTCTGCAGCCCAGAATTACAACACAAAGG-GTTTC-AAAACTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACAAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCAGGCAAAGAGTCAAGGTGGG---------------GGCGGGGAGGATC----------------------------CACCCACCAC-------TGAGCAGAGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109283557 226 - 110113093 gggagg-----acggtgggaggacCGGGCAGCTTCTCTGCAGCCCAGAATTACAACACAAAGG-GTTTC-AAAGCTAGTTGTGATAATGGGTTCAACTTCAGGA-GCTTCCT-TGGCAGCCGTTTCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAAGGTGGG---------------GGCGGGGAGGAACC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002102 215 - 92844088 -------------agtgggaggaCCGAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCGGGGAGGACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAG--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651358 215 + 96509753 -------------agtgggaggacCGAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCGGGGAGGACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAG--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102419 215 - 16982598 -------------agtgggaggaCCGAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCGGGGAGGACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAG--- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2950787 215 - 3785965 -------------agtgggaggaCCGAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCGGGGAGGACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAG--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618564 204 - 90373283 -------------A-----------GAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCAGGGAGGACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGGG--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5501842 215 + 6149316 -------------agtgggaggacCGAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCGGGGAGGACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAG--- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4729981 215 - 5823884 -------------agtgggaggacCCAGCAGCTTCTCTGAAGCCCAGAATTACAACACAAAGG-GTTTC-TAGGCTAATTATGATAATGGGTTCAACTTCAGGA-GCTTCCC-TGGCAGCCGTTGCCAAGGAGACGAG-----G-----CAAGTAGCTGGTCCCCAGCCCCAGATTCGGGGAAAGAGTCAGGGTGGG---------------GGCGGGGAGAACCC-----------ACAG--AGCCCTGG--CACCCACCAC-------TGAGCAGAG--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57440901 231 + 159171411 AGAAGG-----ATGGTAGGAGGACCAGACAGCTTCTCTGCAGCCCAGAATTACAACACATAGA-GTTTCGGAGACTAAGTATCATAATGGGTTCAATTTCAGGA-GCTTCAT-CGGCAGCTGTTGCCAAGGAGACAAG-----GCATGACAAGTAGCTGGTCCCCAGCCCCAGATTCCGGGGCAGCGCTGGGGT-GG---------------GGTGGGAAGGACGC-----------ACAG--AGCCCTGG--CAACCACACC-------TGAGCAGAGGGG i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 407029 230 + 1231380 GGGGGG-----ATGGTGGGAGGATCGGACAGCTTCTCTGCAGCCCAAAGTTACAACAA--AGA-GTTTTGGAAGCTAATTATCATAATGGCTTCAACTTCAGGA-ACTTCCT-CGGCAGCCGATGCCAAGGAGACAAG-----GCATGGCAAGTAGCTGATCCCCAGCCCCAGATTAGGGGACAGCGCCGCGGTGGG---------------GGCAGGAAGGACCC-----------ACAG--AGCCCTGG--CACCCACACC-------AGAGCAGAGGGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1965599 232 + 11732439 GGGAGG-----ATGGTAGGAGGACCGGACAGCTTCTCTGAAGCCCAGAATTACAACACAAAGA-GTTTCGGAGGCTAATTATCATAATGGGTTCAACTTCAGGA-GCTTCCT-CGGCAGCCGTTGCCAAGGAGACAAG-----GCATGGCAAGTAGCTGGTCCCCAGCTCCAGATTCGGGGGCAGCGCCGGGGTGGG---------------GGCGGGAAGGACCC-----------ACAG--AGCCCTGG--CACCCACACC-------TGAGCAGAGGGG i aotNan1.NW_018500483v1 I 620 C 0 s otoGar3.GL873542 22178705 215 + 22939663 GGGGCA-----AGGAGGGGAAGGCTGTG--GCTTCTCC-CAACCCCGAGCCACAGCACAAAAGTGTCTC-AAGGCCAATTATGATAATGA-CTCAACTCCAGGA-GCTGCCC-TGGCTGTGACTGCCAAGGCAACGGGTACT-G-----CAGGGAAC------------------CTGGGGATGG----AAGAATGG---------------AGCAGGCAAGATCTCCATCAGGTGGACAT--GCACCAGA--GATCCCCAAC-------TCATGAGAG-GC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121148 206 + 182113224 -------------------------GGTTGTTTTTTCTGCAGCCCAGAATTACAA-----GGG-GTTTC-AGGGCTAATTATGATAATAGATTCAACTTCAGGAGGCTTCCC-TGGCAGCAGTTGCCAAGGAGACCAGCATC-A-----CAAGCAGCTGGTCCCCAGCCCCAGATTCC----AAGAGCCAGAGAGGA---------------GCAAGGCAGGAACC-----------TCAGGCAGTCCTTAACAACCCACCCT-------GGAATGGAGAAG i mm10.chr2 C 0 I 359 s canFam3.chr24 47091399 207 + 47698779 GGGAGGCATCCCCGGTGCCAGGACGGGGCGGTTTC-CTGCAGCCCGAGG-----------ACG-GTTCT-CA---------------------------CGGCG-AATCCCC-TGGCAGTGGTTGCCAAGGAGACTCGTATC-T-----CACGCAGCCGGGCCCCAGCCCCAGAGTCCCG----GGGCCAGGATGGGGGACACACGGGGGGCGGTGAGGAGGGACC-----------TCAG--GG----GG--CGCTCACCCCACGGTGAGGAGCTGGG--- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 123322 187 + 555560 -----------AAGGACGGAGGCCCGAGAGGTTT--CTGCGGCC----------------AAG-GGTTC-AAGACTGGCTGCGAGCGCAAATTCAACTTGAG---GCTGCTCGCGGCAGGCGTTGCCAAGGAGACGTGCACCTG-----CAA-CAGCAGCTCCCTGGCCTCTGCTTCCAG----GGGCCAGCTGGGG---------------GGCACAGGGGACCC-----------C-----AGCCCGGG--TGCC----AC-------CTTGC------- i dasNov3.JH567899 C 0 C 0 e saiBol1.JH378156 15556995 3266 + 16356641 I a score=1740502.000000 s hg38.chr20_KI270871v1_alt 42949 264 + 58661 CAGGGGGACACCTGGACCGCGGGCGTCGGCTGGGGCTCACCGCACGTCCCTGACGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAG-----------------------ATCACAAGAG------AGGCCATGG-----CGGGGATCAGGCACCCCGA---------ATGCAGTCACAG------ACTGAGCATGGAGCAGCG-----GGGG---ATCTCCTC-----------------CTGGGACCTGGGACCC--------------AAGTGCAAAGAGGAGAAGTTGGGG-----C--AGGGAGGGGCCCATG-------GGAGGG-AC-----------CAAAGGGTCAC---CAGGCCA-GAGGGGTGCCCA------------------ s panTro5.chr20 65618616 258 + 66533130 CAGGGGGACACCTGGACCGCGGGCGTCGGCTGGGGCTCACCGCACGTCCCTGACGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAG-----------------------ATCACAAGAG------AGGCCATGG-----CGGGGATCAGGCACCCCGA---------ATGCAGCCACAG------CCTGAGCGTGGAGCAGCG-----GGGG----TCTCCTC-----------------CTGGGAACTGGGACCT--------------AAGTGCAAAGAGGAGAAGTTGGGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-AC-----------CAAAGGGTCAC---CAGGCCA-GAGGGGT----------------------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61378880 263 + 62195757 CAGGGGGACACCTGGACCGCGGGCGTCGGCTGGGGCTCACCGCACGTCCCTGACGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAG-----------------------ATCACAAGAG------AGGCCATGG-----CGGGGATCAGGCACCCCGA---------ATGCAGCCACAG------CCTGAGCGTGGAGCAGCG-----GGGG----TCTCCTC-----------------CTGGGAACTGGGACCT--------------AAGTGCAAAGAGGAGAAGTTGGGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-AC-----------CAAAGGGTCAC---CAGGCCA-GAGGGGTGCCCA------------------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793407 257 - 1017659 CAGGGGGACACCTGGACCGCAGGCGTCGGCTGGGGCTCACCGCACGT-CCTGACGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAG-----------------------ATCACAAGAG------AGGCCATGG-----CGGGGATCAGGCA-CCCGA---------ATGCAGCCACAG------CCTGAGTGTGGAGCAGCG-----GGGG---GTCTCCTC-----------------CTGGGAACTGGGACCC--------------AAGTGCAAAGAGGAGAAGTTGGGG-----C--AGGGAGGGGCCCGCG-------GGAGGG-AC-----------CAAAGGGTCAC---CAGGCCA-GAGGGGT----------------------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109283783 266 - 110113093 CAGGGGGACACCTGGACCGCAGGCGTCGGCTGGGGCTCACCACATGT-CCAGACGCACTGCCCAGCTCCGTGCCCATCA-GACG-GCCCCAG-----------------------ATCACAAGAG------AGGCCATGG-----CGGGGATCAGGCACCCCGA---------ATGCAGCCACAG------CCTGAGCGTGGAGCAGCG-----GGGGGGTGTCCCCTC-----------------CTAGGAACTGGGACCC--------------AAGTGCAAAGAGGAGAAGTTGGGG-----C--AGGGAGGGGCCCATG-------GGAGGG-AC-----------CAAAGGGTCAC---CAGGCCA-GAGGGGTGCCCA------------------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002317 240 - 92844088 ---------------------GGCGTCAGCTGGGGCTCACCACATGTCCCTGATGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCGTGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCAGGG-----GGGG----TCCCCTC-----------------TTGGGAACGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-GC-----------CAAAGGATCGC---CAGGCCACAAAGGGTGCCCA------------------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651573 240 + 96509753 ---------------------GGCGTCAGCTGGGGCTCACCACATGTCCCTGATGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCGTGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCAGGG-----GGGG----TCCCCTC-----------------TTGGGAACGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-GC-----------CAAAGGATCGC---CAGGCCACAAAGGGTGCCCA------------------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102634 240 - 16982598 ---------------------GGCGTCAGCTGGGGCTCACCACATGTCCCTGATGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCGTGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCAGGG-----GGGG----TCCCCTC-----------------TTGGGAACGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-GC-----------CAAAGGATCGC---CAGGCCACAAAGGGTGCCCA------------------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951002 240 - 3785965 ---------------------GGCATCAGCTGGGGCTCACTACATGTCCCTGATGCACAGCCCAACCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCGTGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCAGGG-----GGGG----TCCCCTC-----------------TTGGGAACGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-GC-----------CAAAGGATCAC---CAGGCCACAAAGGGTGCCCA------------------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89618768 239 - 90373283 ---------------------GGCGCCAGCTGGGGCTCCCCACACGTCCCTGATGCACAG-ACAGCCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCGTGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCAGGG-----GGGG----TCCCCTC-----------------TTGGGAATGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-GC-----------CAAAGGATCAC---CAGGCCACAAAGGGTGCCCA------------------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502057 240 + 6149316 ---------------------GGCGTCAGCTGGGGCTCACCACATGTCCCTGATGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCGTGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCAGGG-----GGGG----TCCCCTC-----------------TTGGGAACGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGG-GC-----------CAAAGGATCAC---CAGGCCACAAAGGGTGCCCA------------------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730196 239 - 5823884 ---------------------GGCGACAGCTGGGGCTCACCACACGTCCCTGATGCACAGCCCAGCCCCGTGCCCATCA-GACA-GCCCCAA-----------------------ATCAC--GAG------AGGCCATGG-----CAGGGATCAGGCACCCCGA---------ATCCAGCCACAG------CCTGAGCGTGGAGCA-GG-----GGGG----TCCCCTC-----------------TTGGGAACGGGGATCC--------------AAGAGCAAACAGGAGAAGCT-GGG-----C--AGGGAGGGGCCCGTG-------GGAGGT-GC-----------CAAAGGGTCAC---CAGGCCACAAAGGGTGCCCA------------------ i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441132 240 + 159171411 CAGGGGGACACCTGGACCGTGGGCATCAGCTGGGGCTCCCCACAGGT-CCTGACACACAGCCTGGCCCCGTGCCC----------------------------------------ATCGC--AAG------AGGCCACGG-----TGGGGATCGGGCACCCCAA---------ATCCAGTCGCAG------CCTCAGCGCCGAGCAGTG-----GGGG-----CCCCTC-----------------CTGGGAACTAGGACCC--------------AAGTCCAAA---GAGAAGTC-AGG-----C--AGGGAGGGACCCGTG-------GGAGGG-AC-----------CAAAGGGTCAG---CGGGCCA-GAGGGGTGCCCA------------------ i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 407259 243 + 1231380 CAGGGGGGCACCCGGACCATGGGCGTCGGCTGGGGCTCCCCACAGGT-CCTGACACACAGCCTGGCCCCATGCCC----------------------------------------AACAC--AAA------AGGCCATGG-----TGGGGATCGGGCACCCCAC---------ATCCAGTCGCAG------CCTCAGCGCCGAGCAGTG-----GGGG-----CCCCTC-----------------CTGGGAACTGGGACCC--------------AAGTCCAAAGACGAGAAGTC-AGG-----C--AGGGAGGGACCGGTG-------GGAGGG-AC-----------CAAAGGGTCAC---CGGGCCA-GAGGGGTACCCA------------------ i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1965831 243 + 11732439 CAGGGGGGCACCTGGACCGTGGGCGTCGGCTGGGGCTCCCCACAGGT-CCTTACACACAGCCTGGCCACGTGCCC----------------------------------------ATCAC--AAG------AGGCCATGG-----TGGGGATCGGGCACCCCAC---------ATCCACTCGCAG------CTTCAGCGCCGAACAGTG-----GGGA-----CCCCTC-----------------CTGGGAACTGGGACCC--------------AGGTCCAAAGAGGAGAAGTC-AGG-----C--AGGGAGGAACCCGTG-------GGAGGG-AC-----------CAAAGGGTCAC---CGGGCCA-GAGGGGTGCCCA------------------ i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22178920 220 + 22939663 CACAGGGA-------------GAGCCAAGCTGCAGCACCCCATGG---CCCGGAGCA-AACTCACTGTCTTTACCAGCA-GACAGGGCCTGG-----------------------GCCAGATGAG------AGG--------------------GGCTTCT---------------AAGCCACGG------CCTGAGCTCTGAACATGG-----TGGG---ACACTCTA-----------------CTCTGAAATGAGCCCC--------------AAGTGCAAAGAGGGAAAGAC-AGG-----CCTGGGGAGGGACT-------------GGGG-AC-----------CACAGG--CAC---TGGGCCA-GAAGGGCACCCA------------------ i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47091606 277 + 47698779 --------CCGCTGGAGACGGGGCACCGTGTGGAACAGGCCGCAT---CTCGAGGCACA-TCAGGTCACGTGCCCGCCG-CGCA-CCCGCAGCACACAGACCATCGTCACCCAGCAGCAC--GAG------CGACCCCAG-----CTGACGTCAGAGGGGACGT---------A---GGCCGCAG------CCTGAGCTCCGCACAGAGCCCCTGGGG---------TC-----------------CTGAGGGCTGGGGCTG--------------TGGTGTGCAGCGCGCATGGC-AGGGGTGAC--CGGGGGTGACAGGCG-------AGGGGGCGG-----------CGGAGGCGCACACTTCAGCCA-GAGGGGCCCTCA------------------ i canFam3.chr24 C 0 I 264 s dasNov3.JH567899 123509 341 + 555560 ----------CCTGGAGGGCGAGCATC--CAGCCACACACACCACTTCCCCAGCACTCATCCAGGCTCTGGGCCTGCCAGGGCA-CCCCCAA-----------------------AACAC--AAGGGGATCAGGCCACGGGTGGCCCAGGGTCCGGAGCCCACACAGGTGTCTACTCGGCAGCAGAATGGACCTCAGCCAGGCGCGAGG-----AGGG----ACTTCCCAGCCGCTGTTGCCTGAGCTGGGCAGGAGGACCCCTGCTCTTGAAGTGGGGTCCCAGAACGAGGAGGT--GG-----C--AGGTGCGGCCCCGGGTCCGGGTGGGGGG-GCATTCCAATGTGCAGAAGGGCAA---CAGGTGG-AGAGGGGGCCCTACGGGTGACAGGAGGGGA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=146058.000000 s hg38.chr20_KI270871v1_alt 43213 23 + 58661 GTTAAG-------------------GCCGGACCACAGTCCTG s panPan2.chr20 61379143 23 + 62195757 GTTAAG-------------------GCCGGACCACAGTCCTG i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284049 23 - 110113093 GTTAAG-------------------GCCAGACCACAGTCCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002557 23 - 92844088 GTTAAG-------------------GCCAGACCACAGTCCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651813 23 + 96509753 GTTAAG-------------------GCCAGACCACAGTCCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102874 23 - 16982598 GTTAAG-------------------GCCAGACCACAGTCCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951242 23 - 3785965 GTTAAG-------------------GCCAGACCACAGTCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619007 23 - 90373283 GTTAAG-------------------GCCAGACCACAGTCCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502297 23 + 6149316 GTTAAG-------------------GCCAGACCACAGTCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730435 23 - 5823884 GTTAAG-------------------GCCAGACCACAGTCCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441372 22 + 159171411 GCTACG-------------------GCCAGACCGGAGTCCT- i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 407502 23 + 1231380 GCGACA-------------------GCCAGACCACAGTCCTG i cebCap1.NW_016107870v1 C 0 I 92 s aotNan1.NW_018500483v1 1966074 23 + 11732439 GCTACG-------------------GCCAGATCGCAGTCCTG i aotNan1.NW_018500483v1 C 0 I 122 s otoGar3.GL873542 22179140 23 + 22939663 GTTAAG-------------------GCCAGATCATGCCCTTG i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 123850 36 + 555560 GCCAGGGGTGGCAGGGGCGCGGGGCGTCAGGCCATG------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e canFam3.chr24 47091883 264 + 47698779 I e saiBol1.JH378156 15556995 3266 + 16356641 I e gorGor5.CYUI01015750v1 793664 0 - 1017659 C e panTro5.chr20 65618874 0 + 66533130 C a score=33613.000000 s hg38.chr20_KI270871v1_alt 43236 10 + 58661 GGGCCCCCAC--- s panPan2.chr20 61379166 10 + 62195757 GGGCCCCCAC--- i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284072 10 - 110113093 GGGCCCCCAC--- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002580 10 - 92844088 GGGCCTCCAC--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651836 10 + 96509753 GGGCCTCCAC--- i macFas5.chr10 C 0 T 38 s macNem1.NW_012014244v1 16102897 10 - 16982598 GGGCCTCCAC--- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951265 10 - 3785965 GGGCCCCCAC--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619030 10 - 90373283 GGGCCCCCAC--- i chlSab2.chr2 C 0 I 82 s manLeu1.NW_012104365v1 5502320 10 + 6149316 GGGCCCCCAC--- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730458 10 - 5823884 GGGCCCCCAC--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441394 8 + 159171411 -GTCCCCCA---- i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22179163 9 + 22939663 GAGTGGTCA---- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 123886 13 + 555560 TGGCTCCTGGGAC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e saiBol1.JH378156 15556995 3266 + 16356641 I e gorGor5.CYUI01015750v1 793664 0 - 1017659 C e panTro5.chr20 65618874 0 + 66533130 C a score=-1260.000000 s hg38.chr20_KI270871v1_alt 43246 1 + 58661 -C s panPan2.chr20 61379176 1 + 62195757 -C i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284082 1 - 110113093 -C i nomLeu3.chr13 C 0 C 0 s macNem1.NW_012014244v1 16102907 1 - 16982598 -C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951275 1 - 3785965 -C i cerAty1.NW_012001373v1 C 0 I 1 s colAng1.NW_012114444v1 4730468 1 - 5823884 -C i colAng1.NW_012114444v1 C 0 C 0 s dasNov3.JH567899 123899 1 + 555560 A- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179172 0 + 22939663 C e manLeu1.NW_012104365v1 5502330 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441402 0 + 159171411 C e chlSab2.chr2 89619040 82 - 90373283 I e macFas5.chr10 95651846 38 + 96509753 T e rheMac8.chr10 92002590 0 - 92844088 C e gorGor5.CYUI01015750v1 793664 0 - 1017659 C e panTro5.chr20 65618874 0 + 66533130 C a score=10135.000000 s hg38.chr20_KI270871v1_alt 43247 34 + 58661 GCCCAGTTAAGGCCGGACCACA---GTCCTGGGGCCC s panTro5.chr20 65618874 34 + 66533130 GCCCAGTTAAGGCCGGACCACA---GTCCTGGGGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379177 34 + 62195757 GCCCGGTTAAGGCCGGACCACA---GTCCTGGGGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793664 34 - 1017659 GCCCAGTTAAGGCCGGACCACA---GTCCTGGGGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284083 34 - 110113093 GCCCAGTTAAGGCCGGACCACA---GTCCTGGGGCCC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95651808 34 + 96509753 GCCCAGTTAAGGCCAGACCACA---GTCCTGGGGCCT i macFas5.chr10 T 38 C 0 s macNem1.NW_012014244v1 16102908 1 - 16982598 ---------------------------------G--- i macNem1.NW_012014244v1 C 0 C 0 s colAng1.NW_012114444v1 4730469 1 - 5823884 ---------------------------------G--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441402 5 + 159171411 --------------------------------AACCC i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22179172 34 + 22939663 ACCCAAC--AGCCAGCACCAAAAG-GTCCTGAGACCC i otoGar3.GL873542 C 0 I 802 s dasNov3.JH567899 123900 30 + 555560 GCAGAGCCCAGGCCGGCCTGCCAGTGGCCT------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e manLeu1.NW_012104365v1 5502330 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951276 1 - 3785965 I e rheMac8.chr10 92002590 0 - 92844088 C a score=981.000000 s hg38.chr20_KI270871v1_alt 43281 3 + 58661 CCA- s panTro5.chr20 65618908 3 + 66533130 CCA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379211 3 + 62195757 CCA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793698 3 - 1017659 CCA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284117 3 - 110113093 CCA- i nomLeu3.chr13 C 0 I 1 s macFas5.chr10 95651842 3 + 96509753 CCA- i macFas5.chr10 C 0 I 1 s calJac3.chr5 57441407 2 + 159171411 CC-- i calJac3.chr5 C 0 C 0 s dasNov3.JH567899 123930 3 + 555560 -CAT i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502330 0 + 6149316 C e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4730470 0 - 5823884 C e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951276 1 - 3785965 I e macNem1.NW_012014244v1 16102909 0 - 16982598 C e rheMac8.chr10 92002590 0 - 92844088 C a score=2781.000000 s hg38.chr20_KI270871v1_alt 43284 2 + 58661 CG- s panTro5.chr20 65618911 2 + 66533130 CG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379214 2 + 62195757 CA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793701 2 - 1017659 CG- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284121 2 - 110113093 CG- i nomLeu3.chr13 I 1 C 0 s rheMac8.chr10 92002590 2 - 92844088 CG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651846 2 + 96509753 CG- i macFas5.chr10 I 1 C 0 s manLeu1.NW_012104365v1 5502330 2 + 6149316 CG- i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57441409 2 + 159171411 CG- i calJac3.chr5 C 0 C 0 s dasNov3.JH567899 123933 2 + 555560 -GG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4730470 0 - 5823884 C e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951276 1 - 3785965 I e macNem1.NW_012014244v1 16102909 0 - 16982598 C a score=191362.000000 s hg38.chr20_KI270871v1_alt 43286 40 + 58661 CTGGCACCCTCAGGCCTTGAGATGCAAAAACTCCTCTA---------CT s panTro5.chr20 65618913 40 + 66533130 CTGGCACCCTCAGGCCTCGAGATGCAGAAACTCCTCTA---------CT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379216 40 + 62195757 CTGGCACCCTCAGGCCTCGAGATGCAGAAACTCCTCTA---------CT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793703 40 - 1017659 CTGGCACCCTCAGGCCTTGAGATGCAGAAACTCCTCTA---------CT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284123 40 - 110113093 CTGGCACCCTCAGGCCTTGAGATGCAGAAGCTCCACTG---------CT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002592 40 - 92844088 CTGGTACCCACAGGCCATGAGATGCAAAAGCTCCTCTG---------CT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95651848 40 + 96509753 CTGGTACCCACAGGCCATGAGATGCAAAAGCTCCTCTG---------CT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16102909 40 - 16982598 CTGGTACCCACAGGCCATGAGATGCAAAAGCTCCTCTG---------CT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951277 40 - 3785965 CTGGTACCCACAGGCCATGAGATGCAAAAGCTCCTCTG---------CT i cerAty1.NW_012001373v1 I 1 C 0 s manLeu1.NW_012104365v1 5502332 40 + 6149316 CTGGTACCCACAGGCCATGAGATGCAAAAGCTCCTCTG---------CT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730470 40 - 5823884 CTGGCACCCACAGGCCATGAGATGCAAAAGCTCCTCTG---------CT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441411 49 + 159171411 CCAGCAACCGCAGGCCTTGAGATGCAGATGAGCATCTGAGCACGTTCCT i calJac3.chr5 C 0 I 5 s dasNov3.JH567899 123935 29 + 555560 ------CCAGCAG-----GGGGGACAGAGCCTCAGCCA---------CG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e chlSab2.chr2 89619040 82 - 90373283 I a score=30998.000000 s hg38.chr20_KI270871v1_alt 43326 7 + 58661 CACGGGG------ s panTro5.chr20 65618953 7 + 66533130 CACGGGG------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379256 7 + 62195757 CACGGGG------ i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284163 7 - 110113093 CACGGGG------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002632 7 - 92844088 CACGGGG------ i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95651888 7 + 96509753 CACGGGG------ i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16102949 7 - 16982598 CACGGGG------ i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2951317 7 - 3785965 CACGGGG------ i cerAty1.NW_012001373v1 C 0 I 1 s manLeu1.NW_012104365v1 5502372 7 + 6149316 CACGGGG------ i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4730510 7 - 5823884 CACGGGG------ i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57441465 7 + 159171411 CTCGGGG------ i calJac3.chr5 I 5 C 0 s dasNov3.JH567899 123964 13 + 555560 CCCGCAGCCAGGA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e chlSab2.chr2 89619040 82 - 90373283 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=17390.000000 s hg38.chr20_KI270871v1_alt 43333 13 + 58661 CCCCCACC----------------------------------TCCG--G---- s panTro5.chr20 65618960 13 + 66533130 CCCCCACC----------------------------------TCCG--G---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379263 13 + 62195757 CCCCCACC----------------------------------TCCG--G---- i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284170 47 - 110113093 CCCCCACCTCCAGGAGACTCCTGTGCTCACGGACACCCCACTTCCG--G---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002640 12 - 92844088 CCCCCACC----------------------------------TCCG------- i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95651896 12 + 96509753 CCCCCACC----------------------------------TCCG------- i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16102957 12 - 16982598 CCCCCACC----------------------------------TCCG------- i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2951325 13 - 3785965 CCCCCACC----------------------------------TCCGG------ i cerAty1.NW_012001373v1 I 1 I 33 s manLeu1.NW_012104365v1 5502380 12 + 6149316 CCCCCACC----------------------------------TCCG------- i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4730518 13 - 5823884 CCCCCACC----------------------------------TCCG-G----- i colAng1.NW_012114444v1 I 1 I 21 s dasNov3.JH567899 123977 13 + 555560 ---CCACC----------------------------------ACAG---CATG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e chlSab2.chr2 89619040 82 - 90373283 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=97827.000000 s hg38.chr20_KI270871v1_alt 43346 54 + 58661 GAGACCCCTGTGCTCAC-GGACCCCCCACCTCCGGGAGGCCCCTCTG----CTCACGGG s panTro5.chr20 65618973 54 + 66533130 GAGACCCCTGTGCTCAT-GGACCCCCCACCTCCAGGAGACCCCTCTG----CTCACGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379276 53 + 62195757 GAGACCCCTGTGCTCAT-GGACCCCCCACCTCCAGGAGACCCCTCTG----CTCA-GGG i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284217 54 - 110113093 GAGACTCCTGTGCTCAC-GGACCCCCCTCCTCCGGGAGACTCCTGTG----CTCACGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92002652 54 - 92844088 GAGACTCCTCTGCTCACGGGACCCCCCACCTCCG-GAGACTCCTCTG----CTCACGGG i rheMac8.chr10 C 0 I 375 s macFas5.chr10 95651908 54 + 96509753 GAGACTCCTCTGCTCACGGGACCCCCCACCTCCG-GAGACTCCTCTG----CTCACGGG i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16102969 52 - 16982598 GAGACTCCTCTGCTCACGGGACCCCCCACCTCCG-GAGACTCCTCTG----CTCACG-- i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5502392 52 + 6149316 GAGACTCCTCTGCTTCCGGGTCCCCCCGCCTCCG---GACTCCTCTG----CTCACGGG i manLeu1.NW_012104365v1 C 0 I 1 s dasNov3.JH567899 123990 58 + 555560 TGGGCACCCATGGGTGC-GGTACTCCCGTGGGcgtggtgctcccgtgggctcccgtggg i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951338 33 - 3785965 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=76143.000000 s hg38.chr20_KI270871v1_alt 43400 55 + 58661 --CCCCCCACCTCCGGGAGACCCCTCTG-CTCACGGG--CCCCCCACCTCCGGGAGACCC s panTro5.chr20 65619027 53 + 66533130 ---CCCCCACCTCCGGGAGACCCCTCTG-CTCAC-CG--CCCCCCACCTCCGGGAGACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379329 51 + 62195757 ---CCCCCACCTCCGGGAGACCCCTCTG-CTCAC-----CGCCCCACCTCCGGGAGACCC i panPan2.chr20 C 0 T 97 s nomLeu3.chr13 109284271 55 - 110113093 --CCCCCCACCTCCGGGAGACTCCTGTG-CTCTCGGA--CCCCCCACCTCCGGGAGACTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003081 54 - 92844088 --CCCCCCACCTCC-GGAGACTCCTCTG-CTCACGGGA-CCCCCCACCTCC-GGAGACTC i rheMac8.chr10 I 375 C 0 s macFas5.chr10 95651963 54 + 96509753 --TCCCCCACCTCC-GGAGACTCCTCTG-CTCACAGGA-CCCCCCACCTCC-GGAGACTC i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16103021 51 - 16982598 --------ACCTCCGGGAGACTCCTCTGCCCCACGGGACCCCCCCACCTCC-GGAGACTC i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5502445 54 + 6149316 --CCCCCCACCTCC-GGAGACTCCTCTG-CTTCTGGGT-CCCCCCACCTCC-AGAGACTC i manLeu1.NW_012104365v1 I 1 C 0 s dasNov3.JH567899 124048 53 + 555560 ctccccgtgtatgcagtgctcccgtgtg-ctcctgtgggctccccgtgtgt-gca----- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951338 33 - 3785965 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=24899.000000 s hg38.chr20_KI270871v1_alt 43455 13 + 58661 CTGTGCTCACGGG s panTro5.chr20 65619080 13 + 66533130 CTCTGCCCACGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379283 13 + 62195757 CTGTGCTCATGGA i panPan2.chr20 T 97 C 0 s nomLeu3.chr13 109284326 13 - 110113093 CTGTGCTCATGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003135 13 - 92844088 CTCTGCTCACGGG i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652017 13 + 96509753 CTCTGCTCACGGG i macFas5.chr10 C 0 I 341 s macNem1.NW_012014244v1 16103072 12 - 16982598 CTCTGCTCACGG- i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5502499 13 + 6149316 CTCTGCTCACGGG i manLeu1.NW_012104365v1 C 0 I 1 s dasNov3.JH567899 124101 13 + 555560 gtgatcccgtggg i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951338 33 - 3785965 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=48437.000000 s hg38.chr20_KI270871v1_alt 43468 30 + 58661 CCCCCCAC---CTCCGGGAGGCCC-CTCTGCTCA s panTro5.chr20 65619093 27 + 66533130 CCCCCCAC---CTCCGGGAGACCCTCTCT----A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379296 30 + 62195757 CCCCCCAC---CTCCAGGAGACCC-CTCTGCTCA i panPan2.chr20 C 0 T 71 s nomLeu3.chr13 109284339 31 - 110113093 CCCCCCAC---CTCCGGGAGACTCCCTCTATTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003149 29 - 92844088 CCCCCCAC---CTCC-GGAGACTC-CTCTGCTCA i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652371 29 + 96509753 CCCCCCAC---CTCT-GGAGACTC-CTCTGCTCA i macFas5.chr10 I 341 C 0 s macNem1.NW_012014244v1 16103084 25 - 16982598 --CCCCAC---CTC--GGAGACTC-CTCTGC-CA i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5502513 29 + 6149316 CCCCCCAC---CTCC-GGAGACTC-CTCTGCTCA i manLeu1.NW_012104365v1 I 1 C 0 s dasNov3.JH567899 124114 34 + 555560 ctccccgtgggctcccgtgggctccctgtgtgcg i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951338 33 - 3785965 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=7990.000000 s hg38.chr20_KI270871v1_alt 43498 4 + 58661 CGGG s panTro5.chr20 65619120 4 + 66533130 CGGG i panTro5.chr20 C 0 C 0 s nomLeu3.chr13 109284370 4 - 110113093 CGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003178 4 - 92844088 CGGG i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652400 4 + 96509753 CGGG i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16103109 4 - 16982598 CGGG i macNem1.NW_012014244v1 C 0 I 1 s manLeu1.NW_012104365v1 5502542 4 + 6149316 CGGG i manLeu1.NW_012104365v1 C 0 I 1 s dasNov3.JH567899 124148 4 + 555560 cagt i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e chlSab2.chr2 89619040 82 - 90373283 I e cerAty1.NW_012001373v1 2951338 33 - 3785965 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379326 71 + 62195757 T a score=18459.000000 s hg38.chr20_KI270871v1_alt 43502 13 + 58661 -CCCCC-----CACCTCCG s panTro5.chr20 65619124 12 + 66533130 --CCCC-----CACCTCCG i panTro5.chr20 C 0 C 0 s nomLeu3.chr13 109284374 13 - 110113093 -CCCCC-----CACCTCCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003183 13 - 92844088 -CCCCC-----CACCTCCG i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652405 13 + 96509753 -CCCCC-----CACCTCCG i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16103114 12 - 16982598 --CCCC-----CACCTCCG i macNem1.NW_012014244v1 I 1 C 0 s chlSab2.chr2 89619122 12 - 90373283 -CCCCC-----CACCTCC- i chlSab2.chr2 I 82 C 0 s manLeu1.NW_012104365v1 5502547 12 + 6149316 -CCCCC-----CACCTCT- i manLeu1.NW_012104365v1 I 1 C 0 s dasNov3.JH567899 124152 17 + 555560 gctcccgtgggctcccc-- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e cerAty1.NW_012001373v1 2951338 33 - 3785965 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379326 71 + 62195757 T a score=4500.000000 s hg38.chr20_KI270871v1_alt 43515 1 + 58661 G s panTro5.chr20 65619136 1 + 66533130 G i panTro5.chr20 C 0 C 0 s nomLeu3.chr13 109284387 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003196 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652418 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103126 1 - 16982598 G i macNem1.NW_012014244v1 C 0 I 308 s cerAty1.NW_012001373v1 2951371 1 - 3785965 G i cerAty1.NW_012001373v1 I 33 C 0 s chlSab2.chr2 89619134 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502559 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s dasNov3.JH567899 124169 1 + 555560 g i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379326 71 + 62195757 T a score=35873.000000 s hg38.chr20_KI270871v1_alt 43516 17 + 58661 GAGGCCCCTCTGCTCAC s panTro5.chr20 65619137 17 + 66533130 GAGACCCCTCTGCTCAC i panTro5.chr20 C 0 I 101 s nomLeu3.chr13 109284388 17 - 110113093 GAGACTCCTCTATTCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003197 16 - 92844088 -AGACTCCTCTGCTCAC i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652419 16 + 96509753 -AGACTCCTCTGCTCAC i macFas5.chr10 C 0 I 1 s cerAty1.NW_012001373v1 2951372 17 - 3785965 GAGACTCCTCTGCTCAC i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89619135 17 - 90373283 GAGACTCCTCTGCTGAC i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5502560 17 + 6149316 GAGACTCCTCTGCTCAC i manLeu1.NW_012104365v1 C 0 I 1 s dasNov3.JH567899 124170 11 + 555560 tgggctcccgt------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379326 71 + 62195757 T a score=59576.000000 s hg38.chr20_KI270871v1_alt 43533 31 + 58661 GGGCCCCCCACCTCCGGGAG-GCCCCTCTGCT s panTro5.chr20 65619255 31 + 66533130 GGGCCCCCCACCTCCGGGAG-ACTCCTGTGCT i panTro5.chr20 I 101 C 0 s nomLeu3.chr13 109284405 31 - 110113093 AGACCCCCCACCTCCGGGAG-ACTCCCGCGTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003214 30 - 92844088 GGGCCCCCCACCTCC-GGAG-ACTCCTCTGCT i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652436 30 + 96509753 GGACCCCCCACCTCC-GGAG-ACTCCTCTGCT i macFas5.chr10 I 1 C 0 s cerAty1.NW_012001373v1 2951390 30 - 3785965 GGACCCCCCACCTCC-GGAG-ACTGCTCTGCT i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89619153 29 - 90373283 GGA-CCCCCACCTCC-GGAG-ACTCCTCTGCT i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5502578 30 + 6149316 GGGCCCCCCACCTCC-GGAG-GCTCCTCTGCT i manLeu1.NW_012104365v1 I 1 C 0 s dasNov3.JH567899 124181 25 + 555560 gggctcccCATGTGC-GCAGTGCTCC------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379326 71 + 62195757 T a score=2038.000000 s hg38.chr20_KI270871v1_alt 43564 2 + 58661 TC s panTro5.chr20 65619286 2 + 66533130 TC i panTro5.chr20 C 0 T 69 s panPan2.chr20 61379255 2 + 62195757 TC i panPan2.chr20 T 71 C 0 s nomLeu3.chr13 109284436 1 - 110113093 -C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003244 1 - 92844088 -C i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652466 1 + 96509753 -C i macFas5.chr10 C 0 I 1 s cerAty1.NW_012001373v1 2951420 1 - 3785965 -T i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89619182 1 - 90373283 -C i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5502608 1 + 6149316 -T i manLeu1.NW_012104365v1 C 0 I 1 s dasNov3.JH567899 124206 1 + 555560 -C i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=79044.000000 s hg38.chr20_KI270871v1_alt 43566 36 + 58661 ACGGGCCCCCCACCTCCGGGAGGCCCCTCTGCTCAC-- s panTro5.chr20 65619219 36 + 66533130 ACGGGCCCCCCACCTCCGGGAGACCCCTCTGCTCAC-- i panTro5.chr20 T 69 C 0 s panPan2.chr20 61379257 36 + 62195757 ACGGGGCCCCCACCTCCGGGAGACCCCTGTGCTCAT-- i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109284437 36 - 110113093 ACGGACCCCCCACCTCCGGGAGACTCCCGCGTTCAC-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003246 35 - 92844088 CGGGGCCCCCCACCTCC-GGAGACTCCTCTGCTTCT-- i rheMac8.chr10 I 1 I 1 s macFas5.chr10 95652468 35 + 96509753 CGGGGCCCCCCACCTCC-GGAGACTCCTCTGCTCAC-- i macFas5.chr10 I 1 I 1 s cerAty1.NW_012001373v1 2951422 35 - 3785965 CGGGTCCCCCCACCTCC-AGAGACTCCTCTGCTCAC-- i cerAty1.NW_012001373v1 I 1 I 1 s chlSab2.chr2 89619184 35 - 90373283 CAGGACCCCCCACCTCC-GGAGACTCCTCTGCTCAC-- i chlSab2.chr2 I 1 I 1 s manLeu1.NW_012104365v1 5502610 35 + 6149316 CGGGTCTCCCCGCCTCC-GGAGACTCCTCTGCTCAC-- i manLeu1.NW_012104365v1 I 1 I 1 s dasNov3.JH567899 124207 30 + 555560 GTGGGCTCCCCGTGTGT-GCAG-------TGCTCCCGT i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=56109.000000 s hg38.chr20_KI270871v1_alt 43602 31 + 58661 GGGCCCCCCACCTCCGGGAGGCCCCTCTGCT s panTro5.chr20 65619255 31 + 66533130 GGGCCCCCCACCTCCGGGAGACTCCTGTGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379293 31 + 62195757 GGACCCCCCACCTCCAGGAGACCCCTCTGCT i panPan2.chr20 C 0 I 56 s nomLeu3.chr13 109284473 30 - 110113093 GGACCCCCCACCTCCGAGAGACTCCCGCGC- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003282 30 - 92844088 GGTTCCCCCACCTCC-GGAGACTCCTCTGCT i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652504 30 + 96509753 GGGCCCCCCACCTCC-GGAGACTCCTCTGCT i macFas5.chr10 I 1 C 0 s cerAty1.NW_012001373v1 2951458 30 - 3785965 GGGGCCCCCACCTCC-AGAGACTCCTCTGCT i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89619220 30 - 90373283 GGTCCCCCCACCTCC-AGAGACTCCTCTGCT i chlSab2.chr2 I 1 C 0 s dasNov3.JH567899 124237 25 + 555560 GGGCTCCCCATGTGCACAGTGCTCC------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C a score=1706.000000 s hg38.chr20_KI270871v1_alt 43633 2 + 58661 TC s panTro5.chr20 65619286 2 + 66533130 TC i panTro5.chr20 C 0 T 132 s nomLeu3.chr13 109284503 2 - 110113093 TC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003312 1 - 92844088 -C i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652534 1 + 96509753 -T i macFas5.chr10 C 0 I 1 s cerAty1.NW_012001373v1 2951488 1 - 3785965 -C i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89619250 1 - 90373283 -C i chlSab2.chr2 C 0 I 1 s dasNov3.JH567899 124262 1 + 555560 -C i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379324 56 + 62195757 I a score=5178.000000 s hg38.chr20_KI270871v1_alt 43635 5 + 58661 ACGGG s nomLeu3.chr13 109284505 5 - 110113093 ACGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003314 4 - 92844088 -CGGG i rheMac8.chr10 I 1 I 1 s macFas5.chr10 95652536 4 + 96509753 -TGGG i macFas5.chr10 I 1 I 1 s cerAty1.NW_012001373v1 2951490 4 - 3785965 -CGGG i cerAty1.NW_012001373v1 I 1 I 1 s chlSab2.chr2 89619252 4 - 90373283 -CAGG i chlSab2.chr2 I 1 I 1 s dasNov3.JH567899 124263 5 + 555560 GTGGG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379324 56 + 62195757 I e panTro5.chr20 65619288 132 + 66533130 T a score=29746.000000 s hg38.chr20_KI270871v1_alt 43640 28 + 58661 CCCCCCACCTCCGGGAG-GCCC----------------------------------CTCTGCC s panTro5.chr20 65619156 28 + 66533130 CCCCCCACCTCCGGGAG-ACCC----------------------------------CTCTGCT i panTro5.chr20 T 132 C 0 s nomLeu3.chr13 109284510 28 - 110113093 CCCCCCACCTCCGGGAG-ACTC----------------------------------TTGCGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003319 27 - 92844088 CCCCCCACCTCC-GGAG-ACTC----------------------------------CTCTGCT i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652541 61 + 96509753 TCCCCCACCTCC-GGAG-ACTCCTCTGCTCACGGGACCCCCCACCTCCGGAGACTCCTCTGCT i macFas5.chr10 I 1 C 0 s cerAty1.NW_012001373v1 2951495 27 - 3785965 CCCCCCACCTCC-GGAG-ACTC----------------------------------CTCTGCT i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89619257 26 - 90373283 -CCCCCACCTCC-GGAG-ACTC----------------------------------CTCTGCT i chlSab2.chr2 I 1 C 0 s dasNov3.JH567899 124268 22 + 555560 CTCCCCGTGTGT-GCAGTGCTC----------------------------------C------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e gorGor5.CYUI01015750v1 793743 0 - 1017659 C e panPan2.chr20 61379324 56 + 62195757 I a score=62507.000000 s hg38.chr20_KI270871v1_alt 43668 39 + 58661 CACGGGC--CCCCCACCTCCGGGAGGCCCCTCTGCCCACGG-- s panTro5.chr20 65619184 39 + 66533130 CACGGGC--CCCCCACCTCCGGGAGACCCCTCTGCTCACGG-- i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793743 39 - 1017659 CACGGAC--CCCCCACCTCCGGGAGACCCCTCTGCTCACCG-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284538 39 - 110113093 CACGGAC--CCCCCACCTCCGGGAGACTCCTGCGCTCACGG-- i nomLeu3.chr13 C 0 I 35 s rheMac8.chr10 92003346 40 - 92844088 TCCGGGTCTCCCCCACCTCC-AGAGACTCCTCTGCTCACGG-- i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652602 40 + 96509753 TCCGGGTCTCCCCCACCTCC-AGAGACTCCTCTGCTCACGG-- i macFas5.chr10 C 0 I 1 s cerAty1.NW_012001373v1 2951522 39 - 3785965 CACGGGGC-CCCCCACCTCC-GGAGACTCCTCTGCTTCCGG-- i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89619283 39 - 90373283 CACAGGAC-CCCCCACCTCC-AGAGACTCCTCTGCTCCCGG-- i chlSab2.chr2 C 0 I 1 s dasNov3.JH567899 124290 33 + 555560 CGTGGGC--TCCCCGTGTGC-GCAG-------TGCTCCCGTGG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I e panPan2.chr20 61379324 56 + 62195757 I a score=17050.000000 s hg38.chr20_KI270871v1_alt 43707 7 + 58661 GC-CCCCC s panTro5.chr20 65619223 7 + 66533130 GC-CCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379380 7 + 62195757 GG-CCCCC i panPan2.chr20 I 56 C 0 s gorGor5.CYUI01015750v1 793782 7 - 1017659 CC-CCCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284612 7 - 110113093 CC-CCCCC i nomLeu3.chr13 I 35 C 0 s rheMac8.chr10 92003387 7 - 92844088 GG-CCCCC i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652643 7 + 96509753 GC-CCCCC i macFas5.chr10 I 1 C 0 s cerAty1.NW_012001373v1 2951562 8 - 3785965 TCTCCCCC i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89619323 7 - 90373283 TC-CCCCC i chlSab2.chr2 I 1 C 0 s dasNov3.JH567899 124323 7 + 555560 GC-TCCCC i dasNov3.JH567899 C 0 I 1436 e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I a score=26453.000000 s hg38.chr20_KI270871v1_alt 43714 8 + 58661 ACCTCCGG s panTro5.chr20 65619230 8 + 66533130 ACCTCCGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379387 8 + 62195757 ACCTCCGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793789 8 - 1017659 GCCTCCGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284619 8 - 110113093 ACCTCCGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003394 8 - 92844088 ACCTCCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652650 8 + 96509753 ACCTCCGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2951570 8 - 3785965 GCCTCCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619330 8 - 90373283 ACCTCCGG i chlSab2.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I e macNem1.NW_012014244v1 16103127 308 - 16982598 I a score=44202.000000 s hg38.chr20_KI270871v1_alt 43722 12 + 58661 GAGACCCCTCTG s panTro5.chr20 65619238 12 + 66533130 GAGACCCCTCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379395 12 + 62195757 GAGACCCCTCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793797 12 - 1017659 GAGACCCCTCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284627 12 - 110113093 GAGACTCCTCTA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003402 11 - 92844088 -AGACTCCTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652658 11 + 96509753 -AGACTCCTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103435 12 - 16982598 GAGACTCCTCTG i macNem1.NW_012014244v1 I 308 C 0 s cerAty1.NW_012001373v1 2951578 11 - 3785965 -AGACTCCTCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619338 11 - 90373283 -AGACTCCTCTG i chlSab2.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e otoGar3.GL873542 22179206 802 + 22939663 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I a score=19732.000000 s hg38.chr20_KI270871v1_alt 43734 5 + 58661 CTCAT s panTro5.chr20 65619250 5 + 66533130 CTCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379407 5 + 62195757 CTCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793809 5 - 1017659 CTCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284639 5 - 110113093 TTCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003413 5 - 92844088 CTCAC i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95652669 5 + 96509753 CTCAC i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16103447 5 - 16982598 CTCAC i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2951589 5 - 3785965 CTCAC i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89619349 5 - 90373283 CTCAC i chlSab2.chr2 C 0 I 1 s otoGar3.GL873542 22180008 5 + 22939663 CTCTA i otoGar3.GL873542 I 802 I 2 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e canFam3.chr24 47091883 264 + 47698779 I e manLeu1.NW_012104365v1 5502645 1 + 6149316 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I a score=6569.000000 s hg38.chr20_KI270871v1_alt 43739 4 + 58661 GGG-C s panTro5.chr20 65619255 4 + 66533130 GGG-C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379412 4 + 62195757 GGG-C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793814 4 - 1017659 CGG-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284644 4 - 110113093 GGA-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003419 4 - 92844088 GGA-C i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95652675 4 + 96509753 GGA-C i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16103453 4 - 16982598 GGG-C i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2951595 5 - 3785965 GGACC i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89619355 4 - 90373283 GGA-C i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5502646 4 + 6149316 GGA-C i manLeu1.NW_012104365v1 I 1 C 0 s otoGar3.GL873542 22180015 2 + 22939663 GG--- i otoGar3.GL873542 I 2 C 0 s canFam3.chr24 47092147 4 + 47698779 GGG-C i canFam3.chr24 I 264 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e saiBol1.JH378156 15556995 3266 + 16356641 I e calJac3.chr5 57441472 0 + 159171411 C e colAng1.NW_012114444v1 4730531 21 - 5823884 I a score=248.000000 s hg38.chr20_KI270871v1_alt 43743 1 + 58661 -C s panTro5.chr20 65619259 1 + 66533130 -C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379416 1 + 62195757 -C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793818 1 - 1017659 -C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284648 1 - 110113093 -C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003423 1 - 92844088 -C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652679 1 + 96509753 -C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103457 1 - 16982598 -C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951600 1 - 3785965 -C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619359 1 - 90373283 -C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502650 1 + 6149316 -C i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57441472 1 + 159171411 -T i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22180017 1 + 22939663 -C i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47092151 1 + 47698779 G- i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121354 359 + 182113224 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4730531 21 - 5823884 I a score=82222.000000 s hg38.chr20_KI270871v1_alt 43744 13 + 58661 CCCCACCTCCGGG s panTro5.chr20 65619260 13 + 66533130 CCCCACCTCCGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379417 13 + 62195757 CCCCATCTCCGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793819 13 - 1017659 CCCCACCTCCGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284649 13 - 110113093 CCCCAACTCCGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003424 12 - 92844088 CCCCACTTCC-GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652680 12 + 96509753 CCCCACCTCC-GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103458 12 - 16982598 CCCCACCTCC-GG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951601 12 - 3785965 CCCCACCTCC-GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619360 12 - 90373283 CCCCACCTCC-GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502651 12 + 6149316 CCCCACCTCC-GG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57441473 13 + 159171411 CCCCACCTCCAGG i calJac3.chr5 C 0 I 1 s otoGar3.GL873542 22180018 13 + 22939663 CCCCACCTCCAGA i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181121713 11 + 182113224 --CCACACCAAGG i mm10.chr2 I 359 I 2 s canFam3.chr24 47092152 13 + 47698779 CCCCACCTCCAGG i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e cebCap1.NW_016107870v1 407525 92 + 1231380 I e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4730531 21 - 5823884 I a score=145243.000000 s hg38.chr20_KI270871v1_alt 43757 22 + 58661 AGACTCCTGTGCTTCCAGGTCT s panTro5.chr20 65619273 22 + 66533130 AGACTCCTGTGCTTCCAGGTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379430 22 + 62195757 AGACTCCTGTGCTTCCAGGTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793832 22 - 1017659 AGACTCCTGTGCTTCCAGGTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284662 22 - 110113093 AGACTCCTGTGCTCCTGGGTCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003436 22 - 92844088 AGACTCCTCTGCTTCCGGGTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652692 22 + 96509753 AGACTCCTCTGCTTCCGGGTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103470 22 - 16982598 AGACTCCTCTGCTTCCGGGTCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951613 22 - 3785965 AGACTCCTCTGCTTCCGGGTCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619372 22 - 90373283 AGACTCCTCTGCTTCTGGGTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502663 22 + 6149316 AGACTCCTCTGCTTCCGGGTCT i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57441487 22 + 159171411 AGACTCCTCTGCTTCCGGGTCT i calJac3.chr5 I 1 C 0 s cebCap1.NW_016107870v1 407617 22 + 1231380 AGACTCCCCTGCTTCCGGGTCT i cebCap1.NW_016107870v1 I 92 C 0 s otoGar3.GL873542 22180032 19 + 22939663 AGActcctctgcctcc---cct i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181121726 20 + 182113224 ATGTTCCTTTCCTTCTGCCT-- i mm10.chr2 I 2 C 0 s canFam3.chr24 47092165 4 + 47698779 -GACA----------------- i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e saiBol1.JH378156 15556995 3266 + 16356641 I e colAng1.NW_012114444v1 4730531 21 - 5823884 I a score=11504.000000 s hg38.chr20_KI270871v1_alt 43779 1 + 58661 C s panTro5.chr20 65619295 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379452 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793854 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284684 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003458 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652714 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103492 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951635 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619394 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502685 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730552 1 - 5823884 C i colAng1.NW_012114444v1 I 21 C 0 s calJac3.chr5 57441509 1 + 159171411 C i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 407639 1 + 1231380 C i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22180051 1 + 22939663 t i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121746 1 + 182113224 C i mm10.chr2 C 0 I 3 s canFam3.chr24 47092169 1 + 47698779 C i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1966097 122 + 11732439 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=231872.000000 s hg38.chr20_KI270871v1_alt 43780 24 + 58661 CCCCGCCTTCCTTCCCCATTC---TGG- s panTro5.chr20 65619296 24 + 66533130 CCCCGCCTTCCTTCCCCATTC---TGG- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379453 24 + 62195757 CCCCGCCTTCCTTCCCCATTC---TGG- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793855 24 - 1017659 CCCCGCCTTCCTTCCCCATTC---TGG- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284685 23 - 110113093 CCCTGCCTTCC-TCCCCAGTC---TGG- i nomLeu3.chr13 C 0 I 112 s rheMac8.chr10 92003459 24 - 92844088 CCCCGCCTTCCTTCCCCAGTC---TGG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652715 24 + 96509753 CCCCGCCTTCCTTCCCCAGTC---TGG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103493 24 - 16982598 CCCCGCCTTCCTTCCCCAGTC---TGG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951636 24 - 3785965 CCCCGCCTTCCTTCCCCAGTC---TGG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619395 24 - 90373283 CCCCGCCTTCCTTCCCCAGTC---TGG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502686 24 + 6149316 CCCCGCCTTCCTTCCCCAGTC---TGG- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730553 24 - 5823884 CCCCGCCTTCCTTCCCCAGTC---TGG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441510 24 + 159171411 CCCCGCCTTACTTCTCCAATC---TGG- i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 407640 24 + 1231380 CCCCGCCTTCCTTCTCCAATC---TGG- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1966219 24 + 11732439 CCCCGCCTTCCTTCTCCAATC---TGG- i aotNan1.NW_018500483v1 I 122 C 0 s otoGar3.GL873542 22180052 27 + 22939663 tccttttccccttccccaccccctTGA- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121750 24 + 182113224 CTTCCTCCTGCCCCCTCAGTC---TTA- i mm10.chr2 I 3 C 0 s canFam3.chr24 47092170 25 + 47698779 ACTCGGCTTCCGCCCCCACCC---CTGA i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=819210.000000 s hg38.chr20_KI270871v1_alt 43804 84 + 58661 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGACGCCGCCACCCCGCTCCTCACTCGCTTCATGCACTTGGGGAAGA s panTro5.chr20 65619320 84 + 66533130 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGACGCCGCCACCCCGCTCCTCACTCGCTTCATGCACTTGGGGAAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379477 84 + 62195757 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGACGCCGCCACCCCGCTCCTCACTCGCTTCATGCACTTGGGGAAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793879 84 - 1017659 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGACACCGCCACCCCGCTCCTCACTCGCTTCATGCACTTGGGGAAGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284820 82 - 110113093 TTGAAGGGGATATTTCTCTTCCGGGAAAGCAGGAC--------ACAGGCGCCGC--CCCCGCTCCTCACTCGCTTCATGCACTTGGGGACGA i nomLeu3.chr13 I 112 C 0 s rheMac8.chr10 92003483 84 - 92844088 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGATGCCACCACCCCGCTCCTCACTCACTTCACACACTCGGGGAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652739 84 + 96509753 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGATGCCACCACCCCGCTCCTCACTCACTTCACACACTCGGGGAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103517 84 - 16982598 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGATGCCACCACCCCGCTCCTCACTCACTTCACACACTCGGGGAAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951660 84 - 3785965 TTGAGGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGATGCCACCACCCTGCTCCTCACTCACTTCACACACTCGGGGAAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619419 84 - 90373283 TTGAAGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGATGCCACCACCCCGCTTCTCACTCACTTCACGCACTTGGGGAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502710 84 + 6149316 TTGAGGGGGATATTTCTTTTCTGGGAAAGCATGAC--------ACAGATGCCACCACCCCGCTCCTCACTCACTTCACACACTCGGGGAAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730577 84 - 5823884 TTGAAGGGGATATTTCTTTTCTGGGAAAGCGTGAC--------AAAGACACCACCACCCCACTCCTCACTCACTTCACGCACTTGGGGAAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441534 84 + 159171411 TTGAAGGGGATATTTCTTTTCTGGGAAAGTGTGAC--------ACAGCCGCCACCACCCTGCTCCTGACTCACTTCACGCACTTGGGGAAGA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 407664 84 + 1231380 TTGAATGGAATATTTCTTTTCTGGGAAAGCATGAC--------ACAGTCGCCACCACCCGGCTCCTGACTCAGTTCACGCGCTTGGGGAAGA i cebCap1.NW_016107870v1 C 0 I 1399 s aotNan1.NW_018500483v1 1966243 83 + 11732439 TTGAAGGGG-TATTTCTTTTCTGGGAAAGCATGAC--------ACAGCCGCCACCACCCCGCTCCTGACTCACTTCATGCTCTTGGGGAAGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22180079 82 + 22939663 TTACAGGGGACATTTCTTTTCTGGGAAAGCATGAC--------ACAGCTGCTGCCACCTCAATGCTGATTCACGTCACATGCTGGGGAGA-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121774 82 + 182113224 TAACAGGGAATCTTTCTCTTCTGGAAAAACAAAACAAAACAAAATAGGCACTGCCATCTCCTTCCAATCTTGCTGCACACAC---------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47092195 72 + 47698779 CCTCAAGGAATAGTCACTTTCTGGAAAAGCACAGC--------AGCGCCTGTGGCACCTCGTTCC----------CGGGCCCACGGGGGG-- i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=251528.000000 s hg38.chr20_KI270871v1_alt 43888 38 + 58661 GGACTCGACGCAGGAGGGGTCTGGGCCCCCCGA-GTCAG s panTro5.chr20 65619404 38 + 66533130 GGACTCGGCGCAGGAGGGGTCTGGGCCCCCCGA-GTCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379561 38 + 62195757 GGACTCGGCGCAGGAGGGGTCTGGGCCCCCCGA-GTCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 793963 38 - 1017659 GGACTCGGCGCAGGAGGGGTCTGGGCCCCCCGA-GTCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284902 39 - 110113093 GGACTCGCCGCAGGAGGGGTCAGGGTCCCCGGAGGTCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003567 39 - 92844088 AGACTCAGCGCGGGAGGGGTCAGGGCCCCCCGAGGCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652823 39 + 96509753 AGACTCAGCGCGGGAGGGGTCAGGGCCCCCCGAGGCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103601 39 - 16982598 AGACTCAGCGCGGGAGGGGTCAGGGCCCCCCGAGGCCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951744 39 - 3785965 GGACTCAGCGCGGGAGGGGTCAGGGCCCCCCGAGGCCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619503 39 - 90373283 GGACTCAGTGCGGGAGGGGTCAGGGCCCCCCGAGGCCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502794 39 + 6149316 GGACTCAGCGCGGGAGGGGTCAGGGCCCCCCGAGGCCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730661 39 - 5823884 GGACTCAGCGGAGGAGGGGCCAGGGCCCTCCGAGGCCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441618 38 + 159171411 AGGTACGGTGGAGGAGGAATCAGGG-CCCCCAGGGTCAG i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1966326 39 + 11732439 AGGTTCGGTGCAGGAGGGGTCAAGACCCCCCGGGGTCAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22180161 26 + 22939663 GGGCTCA--GCAGGAGGGAACGGAGCCC----------- i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47092267 30 + 47698779 ------GTCACAGCACAGGCCGGAGCCCCCT---GCCGG i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121856 0 + 182113224 C e cebCap1.NW_016107870v1 407748 1399 + 1231380 I e saiBol1.JH378156 15556995 3266 + 16356641 I a score=77888.000000 s hg38.chr20_KI270871v1_alt 43926 8 + 58661 TCCCACAG s panTro5.chr20 65619442 8 + 66533130 TCCCACAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379599 8 + 62195757 TCCCACAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794001 8 - 1017659 TCCCACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284941 8 - 110113093 TCCCACAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003606 8 - 92844088 TCCCACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652862 8 + 96509753 TCCCACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103640 8 - 16982598 TCCCACAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951783 8 - 3785965 TCCCACAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619542 8 - 90373283 TCCCACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502833 8 + 6149316 TCCCACAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730700 8 - 5823884 TCCCACAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441656 8 + 159171411 CCCCACAG i calJac3.chr5 C 0 I 245 s saiBol1.JH378156 15560261 8 + 16356641 TCCCGCGG i saiBol1.JH378156 I 3266 I 1 s aotNan1.NW_018500483v1 1966365 8 + 11732439 CCCCACAG i aotNan1.NW_018500483v1 C 0 C 0 s canFam3.chr24 47092297 8 + 47698779 GCCCGCAC i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181121856 0 + 182113224 C e cebCap1.NW_016107870v1 407748 1399 + 1231380 I e otoGar3.GL873542 22180187 0 + 22939663 C a score=25120.000000 s hg38.chr20_KI270871v1_alt 43934 2 + 58661 CC s panTro5.chr20 65619450 2 + 66533130 CC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379607 2 + 62195757 CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794009 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284949 2 - 110113093 CC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003614 2 - 92844088 CC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652870 2 + 96509753 CC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103648 2 - 16982598 CC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951791 2 - 3785965 CC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619550 2 - 90373283 CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502841 2 + 6149316 CC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730708 2 - 5823884 CC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441909 2 + 159171411 CC i calJac3.chr5 I 245 C 0 s saiBol1.JH378156 15560270 2 + 16356641 CC i saiBol1.JH378156 I 1 C 0 s aotNan1.NW_018500483v1 1966373 2 + 11732439 CC i aotNan1.NW_018500483v1 C 0 I 128 s mm10.chr2 181121856 1 + 182113224 -C i mm10.chr2 C 0 C 0 s canFam3.chr24 47092305 2 + 47698779 CC i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e cebCap1.NW_016107870v1 407748 1399 + 1231380 I e otoGar3.GL873542 22180187 0 + 22939663 C a score=14389.000000 s hg38.chr20_KI270871v1_alt 43936 3 + 58661 AGC-- s panTro5.chr20 65619452 3 + 66533130 AGC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379609 3 + 62195757 AGC-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794011 3 - 1017659 AGC-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284951 3 - 110113093 AGC-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003616 3 - 92844088 AGC-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652872 3 + 96509753 AGC-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103650 3 - 16982598 AGC-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951793 3 - 3785965 AGC-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619552 3 - 90373283 AGC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502843 3 + 6149316 AGC-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730710 3 - 5823884 AGC-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441911 3 + 159171411 CGC-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560272 3 + 16356641 CGC-- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22180187 2 + 22939663 AG--- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181121857 3 + 182113224 AGC-- i mm10.chr2 C 0 C 0 s canFam3.chr24 47092307 3 + 47698779 --CGA i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1966375 128 + 11732439 I e cebCap1.NW_016107870v1 407748 1399 + 1231380 I a score=150633.000000 s hg38.chr20_KI270871v1_alt 43939 17 + 58661 CCCCTCGCTCTGCGACT s panTro5.chr20 65619455 17 + 66533130 CCCCTCGCTCTGCGACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379612 17 + 62195757 CCCCTCGCTCTGCGACT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794014 17 - 1017659 CCCCTCGCTCTGTGACT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284954 17 - 110113093 CCCCTCGCTCTGTGACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003619 17 - 92844088 CCCCTCGCTCTGTGACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652875 17 + 96509753 CCCCTCGCTCTGTGACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103653 17 - 16982598 CCCCTCGCTCTGTGACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951796 17 - 3785965 CCCCTCGCTCTGTGACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619555 17 - 90373283 CCCCTCGCCCTGTGACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502846 17 + 6149316 CCCCTCGCTCTGTGACC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730713 17 - 5823884 CCCCTCGCTCTGCGACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441914 16 + 159171411 CCCCTCGCTCTGTGAT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560275 17 + 16356641 CCCCTCACTCTGTGGTC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1966503 17 + 11732439 CCCCTCGCTCTGTGATC i aotNan1.NW_018500483v1 I 128 C 0 s otoGar3.GL873542 22180189 16 + 22939663 GCCCTCACTCTGTACT- i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181121860 17 + 182113224 TGTCTCACTGTCAGACC i mm10.chr2 C 0 C 0 s canFam3.chr24 47092310 7 + 47698779 CCCCTTG---------- i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e cebCap1.NW_016107870v1 407748 1399 + 1231380 I a score=1856234.000000 s hg38.chr20_KI270871v1_alt 43956 211 + 58661 CTGG----ATCCTCCAGTCAGGCCCCTTCCCCAGAGGCTGACTCCAAGTTGGCCAGGGCTGTTCATCTCATCTTGCGTATTTAGTTAAATGAAAA----------CGGAACACGTGAAGGATGGGCGGGCA----GGAGGGAAGGCGTCACCACCTCACCGCCACCCTCAGCC-------CCTG----CCTCAGT-CAGAGCCAGGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC s panTro5.chr20 65619472 211 + 66533130 CTGG----ATCCTCCAGTCAGGCCCCTTCCCCAGAGGCTGACTCCGAGTTGGCCAGGGCTGTTCATCTCATCTTGCGTATTTAGTTAAATGAAAA----------CGGAACACGTGAAGGATGGGCGGGCA----GGAGGGAAGGCGTCGCCACCTCACCGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCCAGGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379629 211 + 62195757 CTGG----ATCCTCCAGTCAGGCCCCTTCCCCAGAGGCTGACTCCGAGTTGGCCAGGGCTGTTCATCTCATCTTGCGTATTTAGTTAAATGAAAA----------CGGAACACGTGAAGGATGGGCGGGCA----GGAGGGAAGGCGTCGCCACCTCACCGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCCAGGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794031 211 - 1017659 CTGG----ATCCTCCAGTCAGGCCCCTTCCCCAGAGGCTGACTCCGAGTTGGCCAGGGCTGTTCATCTCATCTTGCGTATTTAGTTAAATGAAAA----------CGGAACACGTGAAGGATGGGCGGGCA----GGAGGGAAGGCGTCGCCACCTCACCGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCCAGGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109284971 208 - 110113093 CTGG----ATCCTCTGGTCAGGCCCCGTCCCCAGAGGCTGACTCCAACTTGGCCGGGGCTGTTCATCTCATCTTGCGTATTTAGTTAAATGAAAA----------CGGAACACGGGAAGGATGGGCGGGCA----GGAGGGGAGGCGTCGCCGCCTCACTGCCACCCTCATCC-------CCTG----CCACAGA-CAGAGCC-GGGTTGGGTCAGGAGGGGCCC--GACATCAAGACCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003636 208 - 92844088 CTGG----ATCCTCCAGTCAGGACCCTGCCCCAGCGGCTGACTCCGAGGTGGCTGGGGCTGTTCATCTCATCTTGCGTATTCAGTTAAATGAAAA----------CGGAACACGT---GGACGGGCGGGCA----GGAGGGAAGGCGCTGCCGCCTCGCTGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCTGCGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95652892 208 + 96509753 CTGG----ATCCTCCGGTCAGGACCCTGCCCCAGCGGCTGACTCCGAGGTGGCTGGGGCTGTTCATCTCATCTTGCGTATTCAGTTAAATGAAAA----------CGGAACACGT---GGACGGGCGGGCA----GGAGGGAAGGCGCTGCCGCCTCGCTGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCTGCGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103670 208 - 16982598 CTGG----ATCCTCCGGTCAGGACCCTGCCCCAGCGGCTGACTCCGAGGTGGCTGGGGCTGTTCATCTCATCTTGCGTATTCAGTTAAATGAAAA----------CGGAACACGT---GGACGGGCGGGCA----GGAGGGAAGGCGCTGCCGCCTCGCTGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCTGCGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2951813 208 - 3785965 CTGG----ATCCTCCGGTCAGGACCCTGCCCCAGCAGCTGACTCCGAGGTGGCTGGGGCTGTTCATCTCATCTTGCGTATTCAGTTAAATGAAAA----------CAGAACACGT---GGACGGGCGGGCA----GGAGGGAAGGCGCTGCCGCCTCACTGCCACCCTCAGCC-------CCTC----CCTCAGA-CAGAGCTGGGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619572 208 - 90373283 CTGG----ATCCTCCAGTCAGGACCCTGCCCCAGTGGCTGACTCCGAGGTGGCTGGGGCTGTTCATCTCATCTTGCACATTCAGTTAAATGAAAA----------CGGAACACGT---GGACGGGTGGGCA----GGAGGGAAGGCGCTGCCACCTCACTGCCACCCTCAGCC-------CCTG----CCTCAGA-CAGAGCTGCGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5502863 208 + 6149316 CTGG----ATCCTCCGGTCAGGACCCTGCCCCAGCAGCTGACTCCGAGGTGGCTGGGGCTGTTCATCTCATCTTGCGTATTCAGTTAAATGAAAA----------CAGAACACGT---GGACGGGCGGGCA----GGAGGGAAGGCGCTGCCGCCTCGCTGCCACCCTCAGCC-------CCTC----CCTCAGA-CAGAGCTGGGGTTGGGTCAGGAGGGGCCCCTGACATCAAGACCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730730 210 - 5823884 CTGG----ATCCTCCGGTCAGGACCCTGCCCCAGCGGCTGACTCCGAGTTGGCCGGGGCTGTTCATCTCATCTTGCGTATTTAGTTAAATGAAAA----------TGGAACATGTGAAGGATGGGCGGGCA----GAAGGGAAGGCGTTGCCGCCTCGCTGCCACCCTCAGCC-------CCTG----CCTCAGG-CAGAGCTGGGGTTGGGTCAGGAGGGG-CCCTGACATCAAGACCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57441930 220 + 159171411 CTGG----ATCCTCCCCTCAGGCCCTT--CCCGGCGGCTGACTCCGAGTTGGCTGAGACTGTCAATCTCCTCTTGCATATTAAGTGAAATGAAAA----------CGGAACAGGTGAAGGACGGGCAGGCAGTGGGTAGGGAAGGCGTCACCACCTC-CTACCACCCTCAGTCGCTGCCGCCTG----CCTCAGAGCCAGGGTTAGGTTGGGTCAGGAGGGGCCTCTGGCATCAAGACCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560292 217 + 16356641 CTGG----ATCCTCCCGTCGGGCCCTT--CCCAGCGGCTGACTCCGAGTCGGCCGAGGCTGTCAATCTCCTCTCGCGTATTTAGTGAAATGAAAA----------C-GCACAGGTGAAGGACGGGCAGGCAGGGAGGAGGGAACGCGTCGCCACCTC-CTACCACCCTCAGCCGCTGCC-CCTG----CCTCAGAGCCGGCGTTCCGTTGGGTCAGGAGGGGCC-CCGGCATCAGGACCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 409147 220 + 1231380 CTGG----ATCCTCCCGTCAGGCCCTT--CCTAGCGGCTGACTCCGAGTTGGCTGAGGCTGTCAATCTCCTCTTGCGTATTTAGTGAAATGAAAA----------CGGAACAGGTgaaggacgggcaggcaggaaggagggaaggCGTCACCACCTC-CTGCCACCCTCAGCTGCTGCCGCCTG----CCTCAGAGCTGGGGTTGGGTCGGGTCAGGAGGGGCCCCTGGCATCAAGACCCC i cebCap1.NW_016107870v1 I 1399 C 0 s aotNan1.NW_018500483v1 1966520 220 + 11732439 CTGG----ATCCTCCCGTCAGGCACTT--CCCAGCGGCTGACCCCAAGTTGGCTGAGGTTGTCTATCTCCTCTTGCGTATTTAGTGAAATGAAAA----------CGGAACAGGTGAAGGAAGGGCAGGCAGCGGGGAGGGAAGGCGTCACCACCTC-CTACCACCCTCAGCCGCTGCCGCCTG----TCTCAGAGCCGGGGTTGGGTTGGGTCAGGAGGGGCCCCTGGCATCAAGACTCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22180207 206 + 22939663 CAGG----GCTGT---GGTAGGCCCCTTCCCCAAAGACTGACTTTGAGTTAGTTGGGATTATTAAGCTCATTTTACATG---AATGGGACTGAAA----------TTCAACGCACAAACAGCAGGGAGGAG----ACAGGCAGGGCACCACCACACCCCTCTGCACCTCAGCC-------CCTGGTGACCACTCC-CAGAGCTGGGGGTGGGTCAG--GGGGCCTCTGACATTGAG-TCCC i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181121877 171 + 182113224 CTGGGAACACACTCCTGCCTGGTTCCTGACCCAAAGGCTGACT-TGAGCAAGCCAAGGTTCGCCATATCA--ATGCATGTTTAGTAACAACAACAATTCTAGCATCATAACAGGTAAAGGAAGCTAGGTAA----AGA-----------------TCCCAGCCCTGCTCA----------CAAC----TCTTAGA---------------------------CTACTGAAATCTGG----- i mm10.chr2 C 0 C 0 s canFam3.chr24 47092317 148 + 47698779 -------------------GGGGCC----CCCCAAGACTGACGCAGGACGGGGCCGGGGGACTCATCTCGTCTC-CACACT---TGAAGTGAGCG-----------------------GGATGTGAGGCCA----TGA-GCACGGCCCCGCAGCCCCGCCGGTGCTC-------------CCTG---------GA-CG---------------CGGGGAGGGTCTCTGACCCCAAGGCCCC i canFam3.chr24 C 0 I 83 e dasNov3.JH567899 124330 1436 + 555560 I a score=2273132.000000 s hg38.chr20_KI270871v1_alt 44167 265 + 58661 ACTCCCA-CTCCACGGGCTAAGCTTCTCAGCACACCCATGACCTGCCAGGAGGGAAGCAGCCCTACAG------------TCACGTGCCCA-TTTCACAGTCGGGAAAACAGAGGCTCCG---GAGACTCTCAGAGGCCCACGTGCGGATTGGCCAGAGCTGGCTGGCTGCACGGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGGGTCC-CACGCAGCCTCCTTAGGCAGAAAT-TCCCTGTCC--AGAACAATGTCCATGCTGATGAGGCTG s panTro5.chr20 65619683 265 + 66533130 ACTCCCA-CTCCACGGGCTAAGCTTCTCAGCACACCCATGACCTGCCAGGAGGGAAGCAGCCCTACAG------------TCACGTGCCCA-TTTCACAGTCGGGAAAACAGAGGCTCCG---GAGACTCTCAGAGGCCCACGCGCGGATTGGCCAGAGCTGGCTGGCTGCACGGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGGGTCC-CACGCAGCCTCCTTAGGCAGAAAT-TCCCTGTCC--AGAACAATGTCCATGCTGATGAGGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61379840 265 + 62195757 ACTCCCA-CTCCATGGGCTAAGCTTCTCAGCACACCCATGACCTGCCAGGAGGGAAGCAGCCCTACAG------------TCACGTGCCCA-TTTCACAGTCGGGAAAACAGAGGCTCCG---GAGACTCTCAGAGGCCCACGCGCGGATTGGCCAGAGCTGGCTGGCTGCACGGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGGGTCC-CACGCAGCCTCCTTAGGCAGAAAT-TCCCTGTCC--AGAACAATGTCCATGCTGATGAGGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794242 266 - 1017659 ACTCCCA-CTCCACGGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAAGCAGCCCTACAG------------TCACGTGCCCATTTTCACAGTCGGGAAAACAGAGGCTCCG---GAGACTCTCAGAGGCCCACGCGTGGATTGGCCAGAGCTGGCTGGCTGCACGGCCCCCACCATGCACCCCTCTCCCACCGCAGGGGGTCCTGGGGGGTCC-CACGCAGCCTCCTTAGGCAGAAAT-TCCCTGTCC--AGAACAATGTCCATGCTGATGAGGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109285179 280 - 110113093 ACCCCCAGCCCCACGGGCTAAGCTTCTCAGCACACCCATGACCTGCCAGGAGGGAAGCAGCCCTACAGTCAGGAAGACCCTCACGTGCCCA-TTTCACAGTCGGGAAAACAGAGGCTCTA-ACGAGACTCTCAGAGGCCCACGAGCAGACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCACGCCCCGCTCTCCCACTGCAGGGGGTCCTGGGGGGTCC-CATGCAGCCTCCTCAGGCAGAAAT-TCCCTGTCC--AGAATAAAGTCCATGCTGATGAGGCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92003844 256 - 92844088 ACTCCCAGCCCCACGGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAagcagccctacagtaaggaagacgctcacgtgccca-tttcacagacgggaaaacagaggctcta-aggagACTCTCAGAGGCCCATGTGCGGACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGCATCC-CATGCGGCCTCCTT---CAGAAAT-TCCCTGTCC--AGAATA--------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95653100 256 + 96509753 ACTCCCAGCCCCACGGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAAGCAGCCCTACAGTAAGGAAGACGCTCACGTGCCCA-TTTCACAGACGGGAAAACAGAGGCTCTA-AGGAGACTCTCAGAGGCCCATGTGCGGACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGCATCC-CATGCGGCCTCCTT---CAGAAAT-TCCCTGTCC--AGAATA--------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16103878 256 - 16982598 ACTCCCAGCCCCACGGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAagcagccctacagtaaggaagacgctcacgtgccca-tttcacagacgggaaaacagaggctcta-aggagACTCTCAGAGGCCCATGTGCGGACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGCATCC-CATGCGGCCTCCTT---CAGAAAT-TCCCTGTCC--AGAATA--------------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2952021 255 - 3785965 ACTCCCAGCCCCACAGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAagcagccctacagtaaggaagacgctcacgtgccca-tttcacagatgggaaaacagaggctcta-aggagACTCTCAGAGGCCCATGTGC-GACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCATGCACCCCTCTCCCACTACAGGGGGTCCTGGGGCATCC-CATGCGGCCTCCTT---CAGAAAT-TCCCGGTCC--AGAATA--------------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89619780 256 - 90373283 AGTCCCAGCCCCACGGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAAGCAGCCCTACAGTAAGGAAGACGCTCACGTGCCCA-TTTCACAGACGGGAAAACAGAGGCTCTA-AGGAGACTCTCAGAGGCCCATGTGCGGACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCAGGCACCCCTCTCCCACTGCAGAGGGTCCTGGGGGGTCC-CATGCGGCCTCCTT---CAGAAAT-TCCCTGTCC--AGAATA--------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5503071 256 + 6149316 ACTCCCAGCCCCACAGGCTAAGCTTCTCAGCACACCCACGACCTGCCAGGAGGGAagcagccctacagtaaggaagacgctcacgtgccca-tttcacagacgggaaaacagaggctcta-aggagACTCTCAGAGGCCCATGTGCGGACTGGCTGGAGCAGGCTGGCTGCACAGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGCATCC-CATGCGGCCTCCTT---CAGAAAT-TCCCGGTCC--AGAATA--------------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4730940 256 - 5823884 ACTCCCAGCCCCACAGGCTAAGCTTCTCAGCACACCCACGACTTGCCAGGAGGGAagcagccctacagtaaggaagatgctcacatgccca-tttcacagacgggaaaacagaggctcta-aggagACTCTCAGAGGCCCATGTGCGGACTGGCTGGAGCAGGCTGCCTGCACAGCCCCCACCATGCACCCCTCTCCCACTGCAGGGGGTCCTGGGGGGTCC-CATGCGGCCTCCTT---CAGAAAT-TCCCTGTCC--AGAATA--------------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57442150 264 + 159171411 ACTCCCAGCCCCACGGGCTAAGCCTCTCAGCACATGCACTGCCGGCCAGGAGGGAAGCAACCCTACGGTCGGGAAGACGCTCACGTGCCCA-TTTCACAGACTGGAAAGCAGAGGCTCTA-AGGATACTCCCAGAGGCCCATTTAGGGACTGGCCGGAGCAGCC-----------CCCCCCCCTTGCACATCTCTCCCACTGCAGGGGTCCTGGGGG-GTCC-CATGAGGCCTCCTT---CAGAAAT-CCC-CATCC--AGGATAACGTCCACGATGATGAGGCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560509 257 + 16356641 ACTCCCAGTCCCACGGGCTAAGCTGCTCAGCTCACGCACTGCCCGCCAGGAGGGAAGCGACCCTACGGTCAGGAAGACGCTCATGTGCCCA-TTTCACAGACTGGAAAGCAGAGGCTCTA-AGG--------AGAGGCCCATTCAGGGTCTGGCCGGAGCAGGC-----------GCCCCGCCTTGCACACCGCTCCCACTGCAGGGGGTCCTGGGG-GTCC-CATGCAGCCTCCTT---CAGAAAT-TCCGTGTCC--AGAATAACGTCCCCGCTGCTGAGGCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 409367 264 + 1231380 ACTCCCGGCCCCGCGGGCTAAGCCTCTCAGCTCACGCACTGCCCGCCAGGAGGGAAGCAACCCCACCGTCAGGAAGACGCTCATGTGCCCT-TTTCACAGACTGGAAAGCAGAGGCTCTA-AGGAGACTCCCAGAGGCCCATTCGGGGACTGGCTGGAGCAGGC------------CCCCCCCTTGCACACCTCTCCCACTGCAGGGGGCCCTGGGG-GTCC-CATGCGGCCTCCTT---CAGAAGT-TCCCCATCC--AGAATAACGTCCCCGCTGATGAGGCTG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1966740 264 + 11732439 ACTCCCGGCCCCACGGGCTAAGCTTCTCAGCACATGCACTGCCCGCCAGGAGGGAagcaaccctacggtcgggaagatgctcacgtgccca-tttcacagactgggaagcagaggcttta-aggagACTTCCAGAGGCCCATTCGGGGACTGGCCAGAGCAGCC------------CCCCCGCTTGCACACTTCTCCCACTGCAGGGGGTCCTGGGG-GTCC-CATGCGGCCTCCTT---CCAAAAT-TCTCTGTTC--AGAATAACATCCACGCTGATGAGGCTG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22180413 226 + 22939663 ACTCCCAGCCCCACTGGCTAAAATTCTCTGTGTGTCTAGTGCCTGGCA----GGGAGTGATCCTACAG---GGAAGGAGTTCACAT--CCA-CATCAGCGGTGAGGAAACAGAGGCCCAGGAGGGGACT----GAACCTCA---GCAAACTGGCCACAGCTACC------------CCGTGCCCTGC---TCTCTCCCACCCTAG------------------------GCACCCTG---TGGAAAT-TCCTTCTCCCTGGAGTGATGCCCATGCCAATGAGACTG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181122048 260 + 182113224 --------TTCCGTGGGCTGAAGGTCTCTACTTGCCTACTTCATGTCAGGGGTGTGGTGACCCTAAAGGCAGGAAACTGCTCCTGCCCCCA-CTTACAAATGAGAAAAAGAGGGGCTCCA--GGCCACTTGCAT-GGCCCACATGGGATCCAGCTAGAGCAGGC----AAAACTACCTTGTGCAGGAACCCTATTC-----ACAGGAGGATATTGTATGTCCACACAGGATCCCCTG---CAGAAATCTGTCCAACC--AGGATAATCCCCATTCCTATAATGTTG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47092465 83 + 47698779 I a score=209226.000000 s hg38.chr20_KI270871v1_alt 44432 60 + 58661 CA---CCTCCCC-----GGGGCTGGGGACCTGGGAGCCCAGCAGGGCCCCGGGGATGAGCAGAAAG-CC s panTro5.chr20 65619948 60 + 66533130 CA---CCTCCCC-----GGGGCTGGGGACCTGGGAGCCCAGCAGGGCCCCGGGGATGAGCAGGAAG-CC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61380105 60 + 62195757 CA---CCTCCCC-----GGGGCTGGGGACCTGGGAGCCCAGCAGGGCCCCGGGGATGAGCAGGAAG-CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794508 60 - 1017659 CA---CCTCCCC-----GGGGCTGGGGACCTGGGAGCCCAGCAGGGCCCCGGGGGTGAGCAGGAAG-CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109285459 27 - 110113093 CA---CCTCCCC-----GGGGC---------------------------------TGAGCAGGAAG-CC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92004100 42 - 92844088 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGCGAGTAGGAAG-CC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95653356 42 + 96509753 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGCGAGTAGGAAG-CC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16104134 42 - 16982598 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGCGAGTAGGAAG-CC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2952276 42 - 3785965 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGCGAGTAGGAAG-CC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89620036 42 - 90373283 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGTGAGCAGGAAG-CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5503327 42 + 6149316 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGCGAGTAGGAAG-CC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4731196 42 - 5823884 ------------------GGGC--------TGGGAGCCCAGCAGGGCCCCGGGGGTGAGCAGGAAG-CC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57442414 60 + 159171411 CACAGCCT-CCG-----GGGGCTGGGGGC-TCGGAACATAAGAAGG-CCGGGAGCCAAGCAGGAAG-CT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560766 60 + 16356641 CACAGCCTCCCC-----GGGGCTGGGGCC-TGGGAATACAGCAAGG-CCGGG-GCCGAGCAGGAAG-CC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 409631 61 + 1231380 CACAGCCTCCCC-----GGGGCTGGGGCC-TGGGAACACAGCAAGG-CTGGGGGCCAGACAGGAAG-CT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1967004 61 + 11732439 CACAGCCTCCCT-----GGAGCTGGGGCC-TGGGAACACAGCAAGG-CCGGGGGCCAAGCAGGAAG-CT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22180639 51 + 22939663 TG---CCTCCCA-----CAGAC---------AGGAGCACCGGGAAG-TCCAGCCCTGAACAAAAAGACC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181122308 57 + 182113224 TA---CCTTTCCAGTTGAGAGC--------CTGGATTGCAGTAAAGCCTGATGAGAGGACCTACAG-CA i mm10.chr2 C 0 C 0 s canFam3.chr24 47092548 51 + 47698779 ---CAGCGCCTC------GGGCGG------TGGGGACCC--CGAAGCCCAGGGCCCGGGCTGAAGG-CC i canFam3.chr24 I 83 I 34 e dasNov3.JH567899 124330 1436 + 555560 I a score=359729.000000 s hg38.chr20_KI270871v1_alt 44492 41 + 58661 AGCGTGAGGCCGGAGTGGGCAC-------CAGGTCCAGGA--CTGCTCGA s panTro5.chr20 65620008 41 + 66533130 AGCATGAGGCCGGAGTGGGCAC-------CAGGTCCAGGA--CTGCTCGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61380165 41 + 62195757 AGCATGAGGCCGGAGTGGGCAC-------CAGGTCCAGGA--CTGCTCGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794568 41 - 1017659 AGCGTGAGGCCGGAGTGGGCAC-------CAGGTCCAGGA--CTGCTGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109285486 41 - 110113093 AGCGTGAGGCCGGAGCAGGCAC-------CAGGTCCAGGA--CGGCTCGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92004142 41 - 92844088 GGCGTGAGGCCGGAGCAGGCAC-------CAGGTCCAGGA--CTGCTCGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95653398 41 + 96509753 GGCGTGAGGCCGGAGCAGGCAC-------CAGGTCCAGGA--CTGCTCGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16104176 41 - 16982598 GGCGTGAGGCCAGAGCAGACAC-------CAGGTCCAGGA--CTGCTCGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2952318 41 - 3785965 GGCGTGAGGCCGGAGCAGGCAC-------CAGGTCCAGGA--CTGCTCGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89620078 41 - 90373283 GGCGTGAGGCCGGAGCAGGCAC-------CAGGTCCAGGA--CTGCTCGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5503369 41 + 6149316 GGCGTGAGGCCGGAGCAGGCAC-------CAGGTCCAGGA--CTGCTCGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4731238 41 - 5823884 AGCGTGAGGCGGGAGCAGGCAC-------CAGGTCCAGGA--CTGCTCGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57442474 41 + 159171411 GGCGGGAAGCCGCAGCAGGCAC-------CAGGTCCAGGA--CTGCACGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560826 41 + 16356641 AGCGGGAGGCCGCAGCAGGCGC-------CAGGTCCAGGA--CTGCGCGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 409692 41 + 1231380 GGCGGGATGCCGCAGCAGGCAC-------CAGGTCCAGGA--CTGCATGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1967065 35 + 11732439 GGCGGGAGGCCGCAGCAGGCA-------------CCAGGA--CTGCACGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22180690 42 + 22939663 AGGCTGAAGCCAAGGCATGCTC-------CAGGCCCAGAGACCTGCCAG- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181122365 42 + 182113224 AG-----GTCCTCTCCATACACATCCCCTCTGGT-TAAGA--TCACACAT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47092599 34 + 47698779 I a score=2209843.000000 s hg38.chr20_KI270871v1_alt 44533 216 + 58661 GCCTCCCTGGGGG-C--CC-CGCTCGCCTCGTCCATTAGGCAGCCGCC-AC-GCTGCAACCTGGAATCTAATTTCACCATCTAATGAACTGCTCTGTTTCCAGGACACAC-GCCACCTCCCACCT-CAGAAGTGA---CGGGCGCGGGCGCCGCTGACAGAGTCCAGGCGTGAACCGGGCATGAACCAAGCGTGATGGATCACTGC-AGAC--CGCCGGGG-CTGGAGGGG s panTro5.chr20 65620049 216 + 66533130 GCCTCCCTGGGGA-C--CC-CGCTCGCCTCGTCCATTAGGCGGCCGCC-GC-GCTGCAACCTGGAATCTAATTTCACCATCTAATGAACTGCTCTGTTTCCAGGACACAC-GCCACCTCCCACCT-CAGAAGTGA---CGGGCGCGGGCGCCGCTGACAGAGTCCAGGCGTGAACCGGGCATGAACCAAGCGTGATGGATCACTGC-AGAC--CGCCGGGG-CTGGAGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61380206 216 + 62195757 GCCTCCCTGGGGA-C--CC-CGCTCGCCTCGTCCATTAGGCGGCCGCC-GC-GCTGCAACCTGGAATCTAATTTCACCATCTAATGAACTGCTCTGTTTCCAGGACACAC-GCCACCTCCCACCT-CAGAAGTGA---CGGGCGCGGGCGCCGCTGACAGAGTCCAGGCGTGAACCGGGCATGAACCAAGCGTGATGGATCACTGC-AGAC--CGCCGGGG-CTGGAGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794609 215 - 1017659 GCCTCCCTGGGG--C--CC-CGCTCGCCTCGTCCATTAGGCGGCCGCC-AC-GCTGCAACCTGGAATCTAATTTCACCATCTAATGAACTGCTCTGTTTCCAGGACACAC-GCCACCTCCCACCT-CAGAAGTTA---CGGGCGCGGGCGCCGCTGACAGAGTCCAGGCGTGAACCGGGCATGAACCAAGCGTGATGGATCACTAC-AGAC--CGCCGGGG-CTGGAGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109285527 216 - 110113093 GCCTCCCTTGGGG-C--CC-CACTCGCCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGTCTAATGAACTGCTCTGTTTCCAGGACCCAC-GCCACCTCCCACCT-CGGAAGTGA---CGGGCACGGGCGCTGCTGACAGAGTCCAGGCGTGAACCAGGCATGAACCAAGCGTGATGGATCACCAC-AGAC--CTCCGGGG-CTGGAGGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92004183 216 - 92844088 GCCTCCCTGGGGG-C--CC-CGCTCGTCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGTCTAATGAACTGCTCTGTTTCCAGGACGCAC-AACACCTCCCACCT-CGGAAGTGA---CGGGCGCGGGCGCTGCTGACAGAGTccaggcgtgaaccaggcgtgaaccaagcgtgaTGGATGGCCAC-AGAC--CGCCAGGG-CTGGAGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95653439 216 + 96509753 GCCTCCCTGGGGG-C--CC-CGCTCGTCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGTCTAATGAACTGCTCTGTTTCCAGGACGCAC-AACACCTCCCACCT-CGGAAGTGA---CGGGCGCGGGCGCTGCTGACAGAGTccaggcgtgaaccaggcgtgaaccaagcgtgaTGGATGGCCAC-AGAC--CGCCAGGG-CTGGAGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16104217 216 - 16982598 GCCTCCCTGGGGG-C--CC-CGCTCGTCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGTCTAATGAACTGCTCTGTTTCCAGGACGCAC-AACACCTCCCACCT-CGGAAGCGA---CGGGCGCGGGCGCTGCTGACAGAGTccaggcgtgaaccaggcgtgaaccaagcgtgaTGGATGGCCAC-AGAC--CGCCAGGG-CTAGAGGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2952359 216 - 3785965 GCCTCCCTGGGGG-C--CC-CGCTCGTCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGCCTAATGAACTGCTCTGTTTCCAGGACGCAC-AACACCTCCCACCT-CGGAAGTGA---CGGGCGCGGGCGCTGCTGACAGAGTccaggcgtgaaccaggcgtgaaccaagcgtgaTGGATGGCCAC-AGAC--CGCCAGGG-CTGGAGGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89620119 214 - 90373283 GTCTCCCTGGGGG-C--CC-CGCTCGCCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGTCTAATGAACTG--CTGTTTCCAGGACGCAC-AACACCTCCCACCT-CGGAAGTGA---CGGGCACGGGCGCTGCTGACAGAGTCCAGGCGTGAACCAGACATGAACCAAGCGTGATGGATGGCCAC-AGAC--CACCAGGG-CTGGAGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5503410 216 + 6149316 GCCTCCCTGGGGG-C--CC-CGCTCGTCTCGTCCATTAGGCGGCCGCT-GC-GCTGCAACCTGGAATCTAATTTCACCGCCTAATGAACTGCTCTGTTTCCAGGACGCAC-AACACCTCCCACCT-CGGAAGTGA---CGGGCGCGGGCGCTGCTGACAGAGTccaggcgtgaaccaggcgtgaaccaagcgtgaTGGATGGCCAC-AGAC--CGCCAGGG-CTGGAGGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4731279 216 - 5823884 GCCTCCCTGGGGG-C--CC-CGCTCATCTCGTCCATTAGGCGGCCGCC-GC-GCTGCAACCTGGAATCTAATTTCACCGTCTAATGAACTGCTCTGTTTCCAGGACACAC-AACACCTCCCACCT-CGGAAGTGA---CGGGCGCGGGCGCTGCTGACAGAGTCCAGGCGTGAACCAGGCATGAACCAAGCATGATGGATGACCAC-AGAC--CGCCAGGG-CTGGAGGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57442515 205 + 159171411 GTCTCCCTGGGGGCC--CC-CGCTCGCTTCGTCCATCAGGCGGCCGCC-TCGGCTGCAACGTGGAATCTAATTTCACGGTCTAAAGAACTGCTCTGCTTCCA--------------CGTCCACCT-CCGGCGTGA---CGGGCTCTGGCGCTGCTGGTGGTGTTTACGTGTGAACCAGGCATGAACCAGGTATGACAGATCACCGC-AGAC--CGCCAGGG-CTGGAGGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15560867 217 + 16356641 GTCTCCCTGGGGG-C--CC-TGCTCGCTTCGTCCATCAGCCGGCCGCC-TCGGCTGCAACGTGGAATCTAATTTCACCGTCTAATGAACTGCCCTGCTTCCAGGACGCAC-GCCACCTCCCACCT-CGGAAGCGA---CGGGCTCCGGCACCGCTGGTGGCGTCTACATGTGAACCAGGCGTGACCCAGGGGTGATCGATCGCTGC-AGAC--CGCCGGGG-CTGGAGGGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 409733 212 + 1231380 GTCTCCCTGGGGG---------CTCGCTTCGTCCATCAGGCGGCCGCC-TCAGCTGCAACATGGAATCTAATTTCACCATCTAATGAACTGCGCTGCTTCCAGGATGCAC-GCCACCTCCCACCT-CAGGAGTGA---CGGGCTCCAGCACTGCTGGTGGCGTCTACGTGTGAACCAGGCGTGAACCAGGTGTGACCGATCACCGC-AGAC--CGCCGGGG-CTGGACAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1967100 217 + 11732439 GTCTCCCTGGGGG-C--CC-CGCTCGCTTTGTCCATCAGGCGGCCGCC-TCGGCTGCAACATGGAATCTAATTTCACCGTCTAATGAACTGCTCTGCTTCCAGGACGCAC-GCCACCTCCCACCT-CAGCAGTGA---CGGGCTCCAGCTCTGCTGGTGGCATCTACGTGTGAACCAGGCGTGAACCAGGTGGGACCGATCACCGC-AGAC--CGCTGGGG-CTGGAGGGG i aotNan1.NW_018500483v1 C 0 I 82 s otoGar3.GL873542 22180732 188 + 22939663 --CTCCCTGGGGA-A--TC-CCGCCGCCTCGCCTGTTCAGCGGCAGCCGGC-ACAGCAGCACAGAATCTAATTTCGCT-CATAATGAACTG--CCGTTTTCAGGCCCACT-GCCACTTCCAATCT-CAGGAGTGA---CAGAAAACGGCCC----------ATCCACG-GCCACTCCAGTGTGAGCCAGGCATGAGGGGTCGCTCC-CGAC--TGCC-------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181122407 208 + 182113224 GGCTCCCCAAGGA-C--CTACTGCCGCCTCGTCCATTAGACACAGCCA-GC-GCTGTAACCTGGAATCTAATTTCTCCCCCTAATAAACTGCTCTGCTGCCAGGACCTACTGCCTCCTTCAATGT-CAGGAGTGAAGCAGAGCTGGACTGCTGATGGCTGCTTCTA--------------ATAAAAAAAAAATCACACACAGTTGT-ACAT--CCCCTGGGCCTAGACAGA i mm10.chr2 C 0 C 0 s canFam3.chr24 47092633 195 + 47698779 GCCCCCCCCGGAG-CCTCC-TGCCCGCCTCGCTCGTCAGGCCACGGCG-GT-GCCACTGCCTGGAATCTAATTTGGC-ATCTAATGAACTGCTCTGCCTCCAGGACCCGCTGCCACGTCCACCCTCCAGGGGACA---CGGGAACCCAGGCCGCT--------------------CGGGCGCAAGGCAGGCGCGACAG-TCACTGTGAGATCGCGCCGCGG-TCG------ i canFam3.chr24 I 34 C 0 e dasNov3.JH567899 124330 1436 + 555560 I a score=673979.000000 s hg38.chr20_KI270871v1_alt 44749 107 + 58661 ACAAGGGCCACGCTCC-TGCAGAGCTGCACACAGAGACCTCTCG----CGTG----GAGCCGCCTCATGCTGAGCACTGCGTGGCTTGTACCTGCCAGGCCAGGGTCCACCCTCAT------- s panTro5.chr20 65620265 107 + 66533130 ACATGGGCCACGCTCC-TGCAGAGCTGCACACAGAGACCTCTCG----CGTG----GAGCCGCCTCATGCTGAGCACTGCGTGGCTTGTACCTGCCAGGCCAGGGTCCACCCTCAT------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61380422 107 + 62195757 ACACGGGCCACGCTCC-TGCAGAGCTGCACACAGAGACCTCTCG----CGTG----GAGCCGTCTCATGCTGAGCACTGCGTGGCTTGTACCTGCCAGGCCAGGGTCCACCCTCAT------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794824 107 - 1017659 ACACGGGTCACGCTCC-TGGAGAGCTGCACAGAGAGACCTCTCG----CATG----GAGCTGCCTCATGCTGAGCACTGCGTGGCTTGTACCTGCCAGGCCGGGGTCCACCCTCAT------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109285743 107 - 110113093 ACACGGGCCACGCTCC-TGCAGAGCTGCACACGGAGACCTCTCG----CGTG----GAGCCGCCCCACGCTGAGCACTGCGTGGCTTGTACCTGCCAGGCCGGAGTCCACCCTCAT------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92004399 97 - 92844088 ACACAGGCCACACTCC-TGCAGAGCTGCACATGGAGACCTCTCG----C--------------CTCATGCTGGGCACCACGTGGCTTCCACCTGCCAGGCCGGGGTCCACCCTCAT------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95653655 97 + 96509753 ACACAGGCCACACTCC-TGCAGAGCTGCACATGGAGACCTCTCG----C--------------CTCATGCTGGGCACCACGTGGCTTGCACCTGCCAGGCCGGGGTCCACCCTCAT------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16104433 97 - 16982598 ACACAGGCCACACTCC-TGCAGAGCTGCACATGGAGACCTCTCG----C--------------CTCATGCTGGGCACCACGTGGCTTGCACCTGCCAGGCCGGGGTCCACCCTCAT------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2952575 97 - 3785965 ACACAGGCCATACTCC-TGCAGAGCTGTACATGGAGACCTCTCG----C--------------CTCATGCTGGGCACCGCGTGGCTTGCACCTGCCAGGCTGGGGTCCACCCTCAT------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89620333 97 - 90373283 ACACAGGCCACACTCC-TGCAGAGCTGCACACGGAGACCTCTCA----C--------------CTCATGCTGGGCACCACGTGGCTTGCACCTGCCAGGCTGGGGTCCACCCTCAT------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5503626 97 + 6149316 ACACAGGCCACACTCC-TGCAGAGCTGTACATGGAGACCTCTCG----C--------------CTCATGCTGGGCACCGCGTGGCTTGCACCTGCCAGGCCGGGGTCCACCCTCAT------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4731495 97 - 5823884 ACACAGGCCACACTCC-TGCAGAGCTGCACATGGAGACCTCTCG----C--------------CCCATGCTGGGCACTGCGTGGCTTGCACCTGCCAGGCCGGGGTCCACCCTCAT------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57442720 109 + 159171411 -CACGGACCACACTCGGTGCAGAGCTGCCCATGGAGACC-CCCCCCCTCACA----GAACCATCTCTTGCCTGGCACTGTGTGGCTTGCACCTGCCAGGCT-GGGTCCACCCTCAC------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15561084 105 + 16356641 -CACCGGCCACACTCGGTGCACAACTGCCCACAGAGACC-CCCA----CACG----GAACTGTCTCTTGTCCGGCACTCTGTCGCTTGCACCTGCCAGGCC-GGGTCCACCCTCAC------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 409945 105 + 1231380 -CACCGGCCACACTCAGTGCAGAGCTGCCCACAGACACC-CCCA----CACG----GAGCCGTCTCTTGCCCGGCACTGTGTGGCTTGCACCTGCCAGGCC-GGGTCCACCCTCAC------- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22180920 80 + 22939663 ------------CACC-CACAG-GCTGCACGCAGAGATCCCTCT----C--------------CTAGAACCAAGCCTTCCCC--TCCACACCTCCTAGCCCTGGG--CTGCCTCAT------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181122615 97 + 182113224 ACAGAAGCTACATGCC------------ATCTAAGGACCTCTCA----GCTGGAATGAGTCTGCTCACCCTGGGGCAGTTTTGGCTTGT--CTGACACAATGGAGCCC-CTCTTAC------- i mm10.chr2 C 0 C 0 s canFam3.chr24 47092828 85 + 47698779 ----GGGCCCCTCTCC-C---------------GAGACCCTTCC----GGGG----GCCGAGCCTCACCCTGGGTGCCGCCT--------CCCGAAGGGCC--AGCCCGGCCTCCAGGTGAGA i canFam3.chr24 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1967317 82 + 11732439 I a score=3828352.000000 s hg38.chr20_KI270871v1_alt 44856 470 + 58661 TCGGAG--CTTCCGGCAGCACCCACCTGAGCCTAAGGCCATGGGGCAGGGACGGGAGGTGACCCAGGTG-------GGACCGA----GCCTCCCAAACACTGGGTGCTCAA--------CTGGACCCTGACAGGACACAGGTCAGGAAGTCTCAGGTCCTCAGAAGGCCCAGCTGCTAGCCTGATGCTCACGGCCTCC--AAACGGCCTGGGCCTGCCTATGCCCGCCTGCACCCACCTGGCACCTACAGCCCT------------CCTTCCAACATCCTGGGCAGGGAGGCGCTCTCA-GGGGGCTCTCGATGCCCCACACTGACCATGGCCCCAGGATGGCCACTTCCTTCAGCCAGCTGTGGCTCCCTCGGGAACAGGAGTGGAGGAGCTGGAGGC-GGGGGTCCTGCCCAC------------CTGCACGTTGCTCCCTAACCACTC-CCGCAG---CAGACGCCCAAGGCCCACAGGG------------------------ACCCCCAGC-----CCCCTGCATTGCTGCAGCAACCACAGGTCCT s panTro5.chr20 65620372 470 + 66533130 TCGGAG--CTTCCGACAGCACCCACCTGAGCCTAAGGCCATGGGGCAGGGACGGGAGGTGGCCCAGGTG-------GGACCGA----GCCTCCCAAACACTGGGTGCTCAA--------CTGGACCCTGACAGGACACAGGTCAGGAAGTCTCAGGTCCTCAGAAGGCCCAGCTGCTAGCCTGATGCTCACGGCCTCC--AAACGGCCTGGGCCTGCCTATGCCCACCTGCGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACATCCTGGGCAGGGAGGCGCTCTCA-GGGGGCTCTCGATGCCCCACACTGACCATGGCCCCAGGATGGCCACTTCCTTCAGCCAGCTGTGGCTCCCTCGGGAACAGGAGTGGAGGAGCCGGAGGT-GGGGGTCCTGCCCAC------------CTGCATGTTGCTCCCTAACCACTC-CCGCAG---CAGATGCCCAAGGCTCACAGGG------------------------ACCCCCAGC-----CCCCTGCATTGCTGCAGCAACCACAGGTCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61380529 470 + 62195757 TCGGAG--CTTCCGACAGCACCCACCTGAGCCTAAGGCCATGGGGCAGGGACGGGAGGTGGCCCAGGTG-------GGACCGA----GCCTCCCAAACACTGGGTGCTCAA--------CTGGACCCTGACAGGACACAGGTCAGGAAGTCTCAGGTCCTCAGAAGGCCCAGCTGCTAGCCTGATGCTCACGGCCTCC--AAACGGCCTGGGCCTGCCTATGCCCACCTGCGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACATCCTGGGCAGGGAGGCGCTCTCA-GGGGGCTCTCGATGCCCCACACTGACCATGGCCCCAGGATGGCCACTTCCTTCAGCCAGCTGTGGCTCCCTCGGGAACAGGAGTGGAGGAGCCGGAGGT-GGGGGTCCTGCCCAC------------CTGCACGTTGCTCCCTAACCACTC-CCGCAG---CAGATGCCCAAGGCTCACAGGG------------------------ACCCCCAGC-----CCCCTGCATTGCTGCAGCAACCACAGGTCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 794931 469 - 1017659 TCGGAG--CTTCCGGCAGCACCCACCTGAGCCTAAGGCCATGGGGCAGGGATGGGAGGTGGCCCAGGTG-------GGACCGA----GCCTCCCAAACACTGGGTGCTCAA--------CTGGACCCTGACAGGACACAGGTCAGGAAGTCTCAGGTCCTCAGAAGGCCCAGCTGCTAGCCTGATGCTCACGGCCTCC--AAACAGCCTGGGCCTGCCTATGCCCACCTGTGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACATCCTGGGCAGGGAGGCGCTCTCA--GGGGCTCTTGATGCCCCACACTGACCATGGCCCCATGATGGCCACTTCCTTCAGCCAGCTGTGGCTCCCTCGGGAACAAGAGTGGAGGAGCTGGAGGC-GGGGGTCCTGCCCAC------------CTGCACGTTGCTCCCTAACCACTC-CCGCAG---CAGATGCCCAAGGCTCACAGGG------------------------ACCCCCAGC-----CCCCTGCATTGCTGCAGCAACCACAGGTCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109285850 474 - 110113093 TCGGAG--CTTCCGGCAGCACCCACCTGAGCCTAAGGCCATGGGGCAGGGATGGGAGGTGGCCCAGGTG-------GGACCAA----GCCTCCCAAACACTGGGTGCTCAA--------TTGGACCCTGACAGGACACAGGTCAGGAAGTCTCAGGCCATCAGAAGGCCCAGCTGCTGGCCTGCTGCTCACGGCCTCC--AAACGGGCTAAGCCTGTCTGTGCCCACCTGTGCCCAGCTGGCACCTACAG-CCT------------CCTTCCAACATCCTGGGCAGGGAGGCGCTCTCA-GGGGGCTCTCGATGCCCCACACTGACCACGGCCCCAGGATGGCCACTTCCTTCAGCCAGCTGTGGCTCCCTCGGGAACGGGAGCAGAGGAGCTGGAGAC-GGGGGTCCTGCGCAC------------CTGCACGTTGCTCCCTAATCACTC-CCGCAG---CAGATGCCCAAGGCTCACAGGG------------------------ACCACCCGCCCCAGCCCCAGCATTGCTGCAGCAACCATGGGTCCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92004496 460 - 92844088 TCGGAG--CTTCTGGCAGCACCCACCTGAGCC-AAGGCCATGGGGCAGGGATGGGAGGTGGTCCAGGTG-------GGACCGA----GCCTCCCAAACACTGAGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAAGTCTCAGGCCCTCAGAAGGCCCAGCTGCTGGCCTGGTGCTCACGGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACACCCCAGGCA-GGAGGCACTCTCAGGGGGGCTCTCGATG-CCCCCACTCACCATGGCCCCAGGATAGCCACTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACGGGAGCGGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCGCAG---CAGACGCCCAAGGCTTACAGGGAcccccagccccccaaagagcaccacccccagc-----ccccagcACTGCTGCAGCAACCACAGGTCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95653752 459 + 96509753 TCGGAG--CTTCTGGCAGCACCCACCTGAGCC-AAGGCCATGGGGCAGGGATGGGAGGTGGTCCAGGTG-------GGACCGA----GCCTCCCAAACACTGAGTGCTCAA--------CTGGACCCTGACAGGCTACAGGTCAGGAAGTCTCAGGCCCTCAGAAGGCCCAGCTGCTGGCCTGGTGCTCACGGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACACCCCGGGCA-GGAGGCACTCTC-GGGGGGCTCTCGATG-CCCCCACTCACCATGGCCCCAGGATAGCCACTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACGGGAGCGGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCACAG---CAGACGCCCAAGGCTTACAGGGAcccccagccccccaaagagcaccacccccagc-----ccccagcACTGCTGCAGCAACCACAGGTCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16104530 460 - 16982598 TTGGAG--CTTCTGGCAGCACCCACCTGAGCC-AAGGCCATGGGGCAGGGATGGGAGGTGGTCCAGGTG-------GGACCGA----GCCTCCCAAACACTGAGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAAGTCTCAGGCCCTCAGAAGGCCCAGTTGCTGGCCTGGTGCTCACGGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACCTGGAACCTACAGCCCT------------CCTTCCAACACCCCAGGCA-GGAGGCACTCTCAGGGGGGCTCTCGATG-CCCCCACTCACCATGGCCCCAGGATAGCCACTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACGGGAGCGGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCGCAG---CAGACGCCCAAGGCTTACAGGGAcccccagccccccaaagagcaccacccccagc-----ccccagcACTGCTGCAGCAACCACAGGTCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2952672 460 - 3785965 TCGGAG--CTTCTGGCAGCACCCACCTGAGCC-AAGGCCATGGGGCAGGGATGGGAGGTGGTCCAGGTG-------GGACCGA----GCCTCCCAAACACTGAGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAAGTCTCGGGCCCTCAGAAGGCCCAGCTGCTGGCCTGGTGCTCACAGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACTTGGCACCTACAGCCCT------------CCTTCCAACACCCCGGGCA-GGAGGCACTCTCAGGGGGGCTCTTGATG-CCCCCACTCACCATGGCCCCAGGATAGCCACTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACAGGAGCGGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCACAG---CAGACGCCCAAGGCTTACAGGGAcccccagcccctcaaagagcaccacccccagc-----ccccagcACTGCTGCAGCAACCACAGGTCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89620430 437 - 90373283 TCAGAG--CTTCTGGCAGCACCCACCTGAGCC-AAGGCCACGGGGCAGGGATGGGAGGCGGTCCAGGTG-------GGACCGA----GCCTCCCAAACACTGAGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAAGTCTCGGGCCCTCAGAAGGCCCAGCTACTGGCCTGGTGCTCACGGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACACCCCGGGCA-GTAGGCACTCTCAGGGGGGCTCTCGATGCCCCCCACTCACCATGGCCCCAGGATGGCCACTTCCCTCAGCCAGCTGTGGCTCCGTTGGGAACGGGAGCGGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCGCAG---CAGATGCCCAAGGCTTACAGGG------------------------ACCCCCAGC-----CCCCAGCACTACTGCAGCAACCACAGGTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5503723 459 + 6149316 TCGGAG--CTTCTGGCAGCACCCACCTGAGCC-AAGGCCATGGGGCAGGGAAGGGAGGTGGTCCAGGTG-------GGACCGA----GCCTCCCAAACAC-GAGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAAGTCTCGGGCCCTCAGAAGGCCCAGCTGCTGGCCTGGTGCTCACGGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACACCCCGGGCA-GGAGGCACTCTCAGGGGGGCTCTCGATG-CCCCCACTCACCATGGCCCCAGGATAGCCACTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACGGGAGCGGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCGCAG---CAGACGCCTAAGGCTTACAGGGAcccccagccccccaaagagcaccacccccagc-----ccccagcACTGCTGCAGCAACCACAGGTCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4731592 461 - 5823884 TCGGAG--CTTCTGGCAGCACCTAACTGAGCC-AAGGCCATGGGGCAGGGATGGGAGGTGGGCCAGGTG-------GGACCAA----GCCTCCCAAACACTGAGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAAGTCTCAGGCCCTCAGAAGGCCCAGTTGCTGGCCTGGTGCTCACAGCCTCC--AAACGGCCTGGGCCTG----------CCTGTGCCCACCTGGCACCTACAGCCCT------------CCTTCCAACATCCCGGGCA-GGAGGCACTCTCAGGGGGGCTCTCGATGCCCCCCACTCACCATGGCCCCAGGATGGCCACTTCCCTCAGCTAGCTGTGGCTCCCTCGGGAACGGGAGCAGAGGAGCTGGAGGC--GGGGTCCTGCCCAC---------------------------------CTC-CCGCAG---CAGACGCCCAAGGCTTACAGGGACCCCCAGCCCCCCAAAGAGTACCACCCCCAGC-----CCCCAGCACTGCTGCAGCAACCACAGGTCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57442829 445 + 159171411 TCACAG--CTTCTGGCAGCACCCACATGAGCCTAAGGCCACAGAGCAGGGGTGCGAGG-GGCCCAAGTGGGCCTCGGGAATGA----GCC-CCCAAACACTGGGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAGG--------CCTCAGAAGGCCCAGCGGCTGGCCTGGCGCTCACAGCCCCC---AACAGCCTGGGCCTG----------CCCATGCTCACCCGGCACCTCCAGCCCT------------CCTCACAACACCCCGGGCAGGTAAGCATTCTC--GGGGGCCCTCGATGCCCCCCACTGACCACGA-CCCAGGATGGCTGCTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACAGGAGTGGAGGAGCAGGAGACCGGGGTTCCTAACCA----------------------------------CTC-CCACAG---TGG--TCCCAAGGCTCACAGGG-ACCCCAGCCCCCCAAACAGCAA-ACCCCCAGC-----CC-------TGCCACA-CAACCACAGGCCCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15561189 447 + 16356641 TCGCAG--CTTCCGGCAGCACCCACCTGAGCCTAAGGCCACGGGGCAGGGGTGCGAGG-AGCCCAGGTGGGCCTCAGGACTGA----GCC-CCCAGACACTGGGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAGG--------CCTCAGAAAGCCCAGCTGCTGGCCTGGCGCTCACAGCTCGC---AACGGCCTGGGCCTG----------TCCATGCCCACCCGGCACCTCCAGCCCT------------CCCTGCAACACCCTGGGCAGGGAAGTGCTCTCA-GGGGGCCCTCCATG-CCTCCAGTGACCCCGG-CCCAGGATGGCTGCTTCCCTCAGCCAGCTGTGGCTCCCTCAGGAACAGTAGTGGAGGAGCAGGAGGCGGGGGTTCCTAACCA----------------------------------CTC-CCACAG---CGGATGCCCAAGGCTCACAGGG-ACCCCAGCCCCCCAAACAGCAC-A-CCCCAGC-----CC-------TGCCGCAGCAACCACAGGTCCT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 410050 446 + 1231380 TCACAG--CTTCCGGCAGCACCCACCTGAGCCTAAGGCCATGGGACAGGGGTGCGAGG--GCCCAGGTGGGACTCGGGACTGA----GCC-CCCAGACACTGGGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGACA--------CCTCAGAAGGCCCAGCTGCTGGCCTGGCGCTCATAGCCCCC---AATGGCCTGGGCCTG----------CCCGTGCTCAGCCGTCACCTCTAGCCCT------------CCCTGCAACACCCCGGGCAGGGAAGCGCTCTCG-GGGGGCCCTCTATG-CCCCCAGTGACCACAG-CCCAGGATGGCTGCTTCCCTCAGCCAGCTGTGGCTCCCTCAGGAACAGGAGTGGAGGAGCAGGAGACAGAGGTTCCTAACCA----------------------------------CTC-CGGCAG---CGGACGCCCAAGGGTCACAGGA-ACCCCAGCCCCTCAAACAGCAC-A-CCCCAGC-----CC-------TGCCGCAGCAACCACGGGGCCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1967399 449 + 11732439 TCGCAG--CTTCCGGCAGCACCCACCTGAGCCTAAGGCCACGGGGCAGGGGTGCGAGG-AGCCCAGGTGGGCCTCGGGACTGA----GCC-CCTAAACACTGGGTGCTCAA--------CTGGACCCTGACAGGCCACAGGTCAGGAGG--------CCTCAGAAGGCCCAGCTGCTGGCCTGGCGCTCACAGCCCCC---AACGGCCTGGGCCTG----------CCCGTGCTCACCCAGCACCTCCAGCCCT------------CCCCCCAACACCCCGGACAGGGAAGCGCTCTCA-GGGGGCCCTCGATGCCCCCCACTGACCACGG-CCCAGGATGGCTGCTTCCCTCAGCCAGCTGTGGCTCCCTCGGGAACAGGAGTGGAGGAGTAGGAGACAGGGGTTCCTAACCA----------------------------------CTC-CCGCAG---CGGATGCCCAAGGCTCACAGGG-ACCCCAGCCCCCCAAGCAGCAC-ACCCCCAGC-----CC-------TGCCGCAGTAACCACGGGTCCT i aotNan1.NW_018500483v1 I 82 C 0 s otoGar3.GL873542 22181000 286 + 22939663 -------------GGGAGCCCCC--CAGAGCCCCAGGCTATG--------------------CCCAGTG-------------A----ATGCCACAGGCACTA----------------------------------ACAGGT---------------CTTTGGAAGGTTCAGCTGCTGGCTCAGCATTCATGGCCTCC--AGA-------GACATG--------------------------------------------------------AACA-----------------------------------GTGCCCCACACTTG-------CCCAG--TGGCCCTTGCCACTAAACAG--GGTGCATCTCAGGATAGGGTGGCAGAGGCACTAGAGGG------TCCTGTATTC---------------------------------TCT-GCACATCGCCAGATGTCCCAGGCACACAGAGACCCCCAGGACTCTAAA-------AGCAGCA-------CCCCAGCACTGCTGTACCAATCACAGGCCTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181122712 434 + 182113224 -CCAA-----CCTAGTACCACCCA---------TAGGCCCTGGGCATGTGAGAGAAAGTGGCTCAGGGG-------AGACAGACAAGGCCCAGTATACACCAGATGCTCAGAAAATGCCTCAGACCCTGACAGACTATGGCTAAGGAAGCCCCAAGTCCTTGG-AGATTCAGGTGCTGATTCAGCATTTCAGGCCTCCCCAGATGGCCTCAGCTAG----------------CCCCCATATTGTCTCCA-----------------TCTCCAAACACCACAGTCA-GGAAGTATTCTCAAGGGACCTCTCA----CCCACAGGATGAGATGTCACAGGATGGCCATTG-------------AAGGTTATCTCAAGGA------TGTAGAAGTCTGGAGC------ATCTACTCTCTCTGACCTGTCCCCACACAATGCCCTCTAGCTATTCACTCCAT---CAGAAGCCCAAGACTCACAAGG------------------------ACCCCCAGC-----CTAAATAGCTGCTATAGACATCATGAGGCCT i mm10.chr2 C 0 C 0 s canFam3.chr24 47092913 373 + 47698779 GCGGAGGCTTCCCGGGAGCACCCAGCCCAGCCCGAGGCCGCA-GGCGGCGACA------GGCCCACGCG-------GGACTGT----GCCGCGCACACAGCAAGTGCTCAACACGCGC-CTCGAACCCGACAAACCCCAG----------------------------CCCGTTCCCGCCC----ACTCCGGCCCCTC--GCACAGCT---GACCA----------CGCGTGGCCGCTCCACAGCCACAGCCCTTCACGCGGACGCCCTTCCTGT-CCCCGGGCGGGAAGGTGCTC-------------------CCCCCACCGGCCCGTGTCCCTCCGAGGCCTGGTCCCAC--------------------------------GCAGGGCAGGAGTC-------TCTCCTCAC-------------TGAGCATCGCTCCCTCGCCGTCC-ACCCGT---CGGGAGCCCCAAGTTCACAGG-------------------------ACCCCAAGC-----CC-------CTCCACTGACACCACAGGCGCT i canFam3.chr24 C 0 I 992 e dasNov3.JH567899 124330 1436 + 555560 I a score=2660320.000000 s hg38.chr20_KI270871v1_alt 45326 261 + 58661 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCATCCGCCATGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCAGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGTGGTTAAATCAGCTCCCCGGGCACTGCCTCGTGACTTCGCAGCGCCTGCTCACGGTCCCTGGAGACGGAAGCTCCGCAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGGTGCTGGACAGAGACCC s panTro5.chr20 65620842 261 + 66533130 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCGTCCGCCATGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCGGTTAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGTGCCTGCTCACGGTCCCTGGAGACGGAAGCTCCGCAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGGTGCTGGACAGAGACCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61380999 261 + 62195757 TCCAGGG-CCTTCGCCCCAGCCCAGAAAGAGGGGGCGTCCGCCATGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCGGTTAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGTGCCTGCTCACGGTCCCTGGAGACGGAAGCTCCGCAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGGTGCTGGACAGAGACCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795400 261 - 1017659 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGACGTCCGCCATGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCGGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCGCCTGCTCATGGTCCCTGGAGACGGAAGCTCCGCAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGGTGCTGGACAGAGACCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286324 261 - 110113093 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCGTCCGCCGTGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGAAGGAAACCCGCTGGCTCAGCACGTGGTGAAATCAGCTCCCTGGGCACTGCCTCGTGACTTAGCAGCGCCTGCTCAAGGTCCCTGGAGACAGAAGTGTCACAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGGTGCTGGATGGAGACCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92004956 261 - 92844088 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCGTCCACCGTGCACCCCAGGGGCTCTCGGAGCTGCAGCTGTGGGCAGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACGGTCCCTGGAGACAGAAGCTCCACAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGATGCTGGACAGAGACCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654211 261 + 96509753 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCGTCCACCGTGCACCCCAGGGGCTCTCGGAGCTGCAGCTGTGGGCAGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACGGTCCCTGGAGACAGAAGCTCCACAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGATGCTGGACAGAGACCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16104990 261 - 16982598 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCGTCCACCGTGCACCCCAGGGGCTCTCAGAGCTGCAGCTGTGGGCAGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACGGTCCCTGGAGACAGAAGCTCCACAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGATGCTGGACAGAGACCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953132 261 - 3785965 TCCAGGG-CCTTTGCCCCGGCCCAGAAAGAGGGGGCATCCACCGTGCACCCCAGGGGCTCTCGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACGGTCCCTGGAGACAGAAGCTCCACAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGATGCTGGACAGAGACCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89620867 261 - 90373283 TCCAGGG-CCTTCGCCCCGGCCCAGAAAGAGGGGGCATCCACCGTGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCGGACTCTCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACACAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACGGTCCCTGGAGACAGAAGCTCCGCAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGGTGCTGGACAGAGGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504182 261 + 6149316 TCCAGGG-CCTTTGCCCCGGCCCAGAAAGAGGGGGCATCCACCGTGCACCCCAGGGGCTCTCGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACGGTCCCTGGAGACAGAAGCTCCACAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGATGCTGGACAGAGACCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732053 262 - 5823884 TCCAGGGCCCTTTGCCCCGGCCCAGAAAGAGGGGGCGTCCACCGTGCACCCCAGGGGCTCTGGGAGCTGCAGCTGTGGGCGGACTCCCAGGCCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCCCGGGCACTGCCTCGTGACTTAGCAGCACCTGCTCACAGTCCCTGGAGACAGAAGCTCCGCAGGGCTCATTTGTTCTCCATTAGTCACCTGTCCCACCCAGACCACAGATGCTGGACAGAGACCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443274 258 + 159171411 TCCAGGG-CCTCCACCCCGCCCCAGAAAAAGGGGGCATCTGCAGTGCACCC--AGGGCTTGGGGAGCTGCAGCTGTGGGCAGACTCCCAGGCACTGGCAGGAAACCCGCTTGCTCAGCACGCGGTGAAATCAGCTCCT-GGGCACTACCTCGTGACTTATCAGCGCCTGCTCACGGTCCCTGGAGACGGATGCTCCGCAGGGCTCATTTGTTCTCTGTTAGCCACCTGTCCCACCCAGATCACAGGTGCTGGACAGAGACCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15561636 257 + 16356641 TCCAGGG-CCTTCACCGCACCCCAGAAAGAGGGGGCATCTGCAGTGCACCC--AGGGCTTGGGGAGCTGCAGCTGTGGGCAGACTCCCAGGCCCTAGCAGGAAACTCGCTGGCTCAGCACACAGTGAAATCAGCTCCC--GGCACGGCCTCGTGACTGAGCAGCGCCTGCTCACGGTCCCTGGAGACGGAAGCTCCGCAGGACTCACTTGTTCTCCGTTAGCCGCCTGTCCCACCCAGATCACACGTGCTGGACAGAGACCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 410496 239 + 1231380 TCCAGGG-CCTTCACCCCGCCCCAGAAAGAGGGGGCATCTGCAGTGCACCC--GGGGCTTGGGGAGCTGCAGCTGTGGGC-------------------GGAAACCCGCTGGCTCAGCACGCGGTGAAATCAGCTCCC-GGGCACTGCCGCGTGACTTAGCAGCGCCTGCTCACGGTCCCCGGAGACGGAAGCTCTGCAGGGCTGATTCGTTCTCCGTTCGCCACCTGTCCCACCCAGATCACAGGTGATGGACAGAGACCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1967848 257 + 11732439 TCCAGGG-CTTTCACCCCGCCCCAGAAAGAGGGGGCATCTGCAGTGCACCC--GGGGCTTGGGGAGCTGCAGCTGTGGGCGGACTCCCAGGTCCTGGCAGGAAACCCGCTGGCTCAGCACGCAGTGAAATCAGCTCCC-AGGCACTGCCTCGTGACTTAGCAGCGCCTGCTCACGGTCCCTGGAGACGGAAGCTCCGCAGGGCTCATTTGTTCTCCGTTAGCCGCATGTCCCA-CCAGATCACAGGTGCTGGACAGAGACCC i aotNan1.NW_018500483v1 C 0 I 60 s otoGar3.GL873542 22181286 101 + 22939663 TC------------------CCCAGAAGGAGTGGGC-----------------------TTGGGAG---------------------------------------------------------------------------------CCTCGTGACTTAGCA---CCTCCACTCAGGCCCT------------------ATGCTAATTTGC-----------------TCCCACACAGATCCCAGATGTTAG-TAGAGACTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123146 213 + 182113224 --------CC----------CCCAGAAAGGCTAGGGATCTGATACAGGCACAGGTGTCT----AAGCTGAGACCGTGGAGAG---CTCAG---CTGGGCAGGAACCCGCCAACTCAGCATAGGGAGAGCC---CTTCCCGGGCACCACCTCATGACCTGGAACCTCCTACATAAGCTCTCTGGAGACTGAAGCTCCATGAGGTTAATTTAT--TCCATTAGTC---------------ATCGTAGGTGCTGGACAGAGCCC- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=4241.000000 s hg38.chr20_KI270871v1_alt 45587 1 + 58661 A s panTro5.chr20 65621103 1 + 66533130 A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381260 1 + 62195757 A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795661 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286585 1 - 110113093 A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92005217 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654472 1 + 96509753 G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105251 1 - 16982598 G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953393 1 - 3785965 G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621128 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504443 1 + 6149316 G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732315 1 - 5823884 G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443532 1 + 159171411 G i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15561893 1 + 16356641 G i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 410735 1 + 1231380 G i cebCap1.NW_016107870v1 C 0 I 63 s otoGar3.GL873542 22181387 1 + 22939663 A i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123359 1 + 182113224 A i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1968105 60 + 11732439 I e canFam3.chr24 47093286 992 + 47698779 I a score=89829.000000 s hg38.chr20_KI270871v1_alt 45588 26 + 58661 GCCGGTGCACCAAGCAG-GGCTGGCCA s panTro5.chr20 65621104 26 + 66533130 GCAGGTGCACCAAGCAG-GGCTGGCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381261 26 + 62195757 GCAGGTGCACCAAGCAG-GGCTGGCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795662 26 - 1017659 GCAGGTGCACCAAGCAG-GGCTGGCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286586 26 - 110113093 GCAGGTGCACTAAGCAG-GGCTGGCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92005218 24 - 92844088 GTAGGTGTACCAAG--A-GGCTGGCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654473 24 + 96509753 GTAGGTGCACCAAG--A-GGCTGGCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105252 24 - 16982598 GGAGGTGCACCAAG--A-GGCTGGCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953394 24 - 3785965 GTAGGTGCACCAAG--A-GGCTGGCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621129 24 - 90373283 GTAGGTGCACCAAG--A-GGCTGGCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504444 24 + 6149316 GTAGGTGCACCAAG--A-GGCTGGCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732316 25 - 5823884 GTAGGTGCACCAAG--AGGGCTGGCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443533 5 + 159171411 ----------------------AGCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15561894 5 + 16356641 ----------------------CGCCA i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22181388 16 + 22939663 GCAGGTGCAC------T-GGTTC---- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123360 24 + 182113224 --GTCTACATCAGGTAG-GACTGTCCC i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1968105 60 + 11732439 I e cebCap1.NW_016107870v1 410736 63 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I a score=20777.000000 s hg38.chr20_KI270871v1_alt 45614 4 + 58661 AA-GT s panTro5.chr20 65621130 4 + 66533130 AA-GT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381287 4 + 62195757 AA-GT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795688 3 - 1017659 AA--T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286612 5 - 110113093 AAAGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92005242 4 - 92844088 AA-GT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654497 4 + 96509753 AA-GT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105276 4 - 16982598 AA-GT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953418 4 - 3785965 AA-GT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621153 4 - 90373283 AA-GT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504468 4 + 6149316 AA-GT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732341 4 - 5823884 AA-GT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443538 4 + 159171411 AA-GT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15561899 4 + 16356641 AA-GT i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1968165 4 + 11732439 AC-CT i aotNan1.NW_018500483v1 I 60 C 0 s otoGar3.GL873542 22181404 4 + 22939663 AA-GT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123384 3 + 182113224 AA-G- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e cebCap1.NW_016107870v1 410736 63 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I a score=65307.000000 s hg38.chr20_KI270871v1_alt 45618 6 + 58661 GCCCAG s panTro5.chr20 65621134 6 + 66533130 GCCCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381291 6 + 62195757 GCCCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795691 6 - 1017659 GCCCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286617 6 - 110113093 GCCCAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92005246 6 - 92844088 GCCCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654501 6 + 96509753 GCCCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105280 6 - 16982598 GCCCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953422 6 - 3785965 GCCCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621157 6 - 90373283 GCCCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504472 6 + 6149316 GCCCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732345 6 - 5823884 GCCCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443542 6 + 159171411 GCCCAG i calJac3.chr5 C 0 I 163 s saiBol1.JH378156 15561903 6 + 16356641 GCCCAG i saiBol1.JH378156 C 0 I 109 s cebCap1.NW_016107870v1 410799 6 + 1231380 GCCCAT i cebCap1.NW_016107870v1 I 63 C 0 s aotNan1.NW_018500483v1 1968169 6 + 11732439 GCCCAT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181408 6 + 22939663 ATCTAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123387 4 + 182113224 --CCAT i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=433516.000000 s hg38.chr20_KI270871v1_alt 45624 59 + 58661 CCCAGCCCCATGC-AGAGGTCCTGGCCCGCCCTCCCCGACC--CCG---------C----------------AACCTCCCTGGGCTC s panTro5.chr20 65621140 59 + 66533130 CCCAGCCCCACGC-AGAGGTCCTGGCCCGCCCTCCCCGACC--CCG---------C----------------AACCTCCCTGGGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381297 59 + 62195757 CCCAGCCCCACGC-AGAGGTCCTGGCCCGCCCTCCCCGACC--CCG---------C----------------AACCTCCCTGGGCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795697 59 - 1017659 CCCAGCCCCACGC-AGAGGTCCTGGCCCGCCCTCCCCAACC--CCG---------C----------------AACCTCCCTGGGCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286623 61 - 110113093 CCCAGCCCCACGCAAGAGGTCCTGGCCCTCCCTCCCCGACC--CCG---------CA---------------AACCTCCCTGGGCTC i nomLeu3.chr13 C 0 I 179 s rheMac8.chr10 92005252 72 - 92844088 CCCAGCCCCACGC-AGAGGTCCTGGCCCTCCCTCCTGGACC--CTG---------CAACGCCCG--T-CCCCGACCTCCCTGGGCTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654507 73 + 96509753 CCCAGCCCCACGC-AGAGGTCCTGGCCCTCCCTCCTGGACC--CTG---------CAACGCCCG--TCCCCCGACCTCCCTGGGCTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105286 73 - 16982598 CCCAGCCCCACGC-AGAGGTCCTGGCCCTCCCTCCTGGACC--CTG---------CAACGCCCG--TCCCCCGACCTCCCTGGGCTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953428 73 - 3785965 CCCAGCCCCACGC-AGAGGTCCTGGCCCTCCCTCCTGGACC--CTG---------CAACGCCCG--TCCCCCGACCTCCCTGGGCTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621163 73 - 90373283 CCCAGCCCCACGC-AGAGGTCCTGGCCCTCCCTCCCGGACC--CTC---------CAACGCCCG--TCCCCCAACCTCCCTGGGCTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504478 73 + 6149316 CCCAGCCCCACGC-AGAGGTCCTGGCCCTCCCTCCTGGACC--CTG---------CAACACCCG--TCCCCCGACCTCCCTGGGCTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732351 73 - 5823884 CCCAGCCCCATGC-AGAGGTCCTGGCTCTCCCTCCCGGACC--CTG---------CAACGCCTG--TCCCCCGACCTCCCTGGGCTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443711 71 + 159171411 CCAGGCCCCATAC-AGAGGTCCTGGCCC-TCTCTCCC-ATC--TGG---------CATCACCCG--CCCCCTGACCTCCCTAGAATT i calJac3.chr5 I 163 C 0 s saiBol1.JH378156 15562018 70 + 16356641 ccccaccccaGGC-AGAGGCCCCGGCCC-CCCTCCCC-ATC---GG---------CATCACCCG-TCCCCCTGACCTCCCTGGACT- i saiBol1.JH378156 I 109 C 0 s cebCap1.NW_016107870v1 410805 73 + 1231380 CCCCACCCCACAC-AGAGGTCCCAGCCCTCCCTCCCC-ATC--CAG---------CATCACCCG-CCCCCCTGACCTCCCTGGACTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1968175 72 + 11732439 CCCAGCCCCTCGC-AGAGGCCCCGGCCCTCCCTCCCC-ATC--CAG---------CGTCACCCG--CCCCCCGACCTCCCTGGACTC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181414 84 + 22939663 CCCAGGCTCACAC-GAGGTCCTTGACACACCTCTCCCAGTG--CTgggggtgggtcagggggtgggtcagCCAAGCTGCATGGCTTG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123391 51 + 182113224 GTCAGGCCTACAC-TGCATCCCCG------CCTGTTGAATCATCTA---------CGAAGGCAG-----------CTC--------- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=1014440.000000 s hg38.chr20_KI270871v1_alt 45683 127 + 58661 GCAGCCCCTGGCC---TGGGGTCCCCTGGACTTTACTCTTCCTCCCGGCA---TGC--CCCGGC-TACCCACTCTCCACTG---CCCCATCCCAA------------CCCACTGAGCCCGCAGAGAAGCGCCCCTGTACCAGCCA-------CTTTGA s panTro5.chr20 65621199 127 + 66533130 GCAGCCCCTGGCC---TGGGGTCCCCTGGACTTTACTCTTCCTCCCAGCA---TGC--CCCGGC-TACCCACTCTCCACTG---CCCCATCCCAA------------CCCACTGAGCCCGCAGAGAAGCGCCCCTGTACCAGCCA-------CTTTGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381356 127 + 62195757 GCAGCCCCTGGCC---TGGGGTCCCCTGGACTTTACTCTTCCTCCCAGCA---TGC--CCCAGC-TACCCACTCTCCACTG---CCCCATCCCAA------------CCCACTGAGCCCGCAGAGAAGCGCCCCTGTACCAGCCA-------CTTTGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795756 127 - 1017659 GCAGCCCCTGGCC---TGGGGTCCCCTGGACTTTACTCTTCCTCCCAGCA---TGC--CCCGGC-TACCCACTCTCCACTG---CCCCATCCCAA------------CCCACTGAGCCCGCAGAGAAGCACCCCTGTACCAGCCA-------CTTCGA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92005324 126 - 92844088 GCAGCCCCTGGCC---TGGGGTCCCC-GGACTGTGCTCTGCCTCCCAGCA---TGC--CCCGGC-CGCCCACTCTGCACTG---CCCCATTCCAA------------CCCACGGAGCCCGCAGAGAAGCGTCCCTGTACCAGCCA-------CTTCGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654580 126 + 96509753 GCAGCCCCTGGCC---TGGGGTCCCC-GGACTGTGCTCTGCCTCCCAGCA---TGC--CCCGGC-CGCCCACTCTGCACTG---CCCCATTCCAA------------CCCACGGAGCCCGCAGAGAAGTGTCCCTGTACCAGCCA-------CTTCGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105359 126 - 16982598 GCAGCCCCTGGCC---TGGGGTCCCC-GGACTGTGCTCTGCCTCCCAGCA---TGC--CCCGGC-CGCCCACTCTGCACTG---CCCCATTCCAA------------CCCACGGAGCCCGCAGAGAAGCGTCCCTGTACCAGCCA-------CTTCGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953501 126 - 3785965 GCAGCCCCTGGCC---TGGGGTCCCC-GGACTGTGCTCTGCCTCCCAGCA---TGC--CCCGGC-CGCCCACTCTGCACTG---CCCCATTCCAA------------CCCACGGAGCCCGCAGAGAAGCGTCCCTGTACCAGCCA-------CTTCGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621236 126 - 90373283 GCAGCCCCTGGCC---TGGGGTCCCC-GGACTGTGCTCTGCCTCCCAGCA---TGC--CCCGGC-TGCCCACTCTCCACTG---CCCCATTCCAA------------CCCACGGAGCCCGCAGAGAAGCGTCCCCGTACCAGCCA-------CTTCGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5504551 126 + 6149316 GCAGCCCCTGGCC---TGGGGTCCCC-GGACTGTGCTCTGCCTCCCAGCA---TGC--CCCGGC-CGCCCACTCTGCACTG---CCCCATTCCAA------------CCCACGGAGCCCACAGAGAAGCGTCCCTGTACCAGCCA-------CTTCGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4732424 127 - 5823884 GCAGCCCCTGGCC---TGGGGTCCCCTGGAGTTTGCTCTGCCTCCCAGCA---TGC--TCCGGC-TGCCCACTCTCCACTG---CCCCATTCCAA------------CCCACAGAGCCCGCAAAGAAGCGTCCCTGTACCAGCCA-------CTTCGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443782 145 + 159171411 GCAGCCCCTGGCC---TGGCGTCCCCTGGTCTTGGCTCTTCCTTCCAGCA---TGC--CCCAAT-TGCCCGCTCTCCACTG---CCCAATTCCAGCCGAAGGCAC-CCCCACTCAGCCCACAGAGGAGTGTCCCTGTCCCAGCCACACCCCACTTCGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15562088 144 + 16356641 -CAGCCCCTGGCC---TGGGGTCCCCGGGACTTGGCTCTTCCTTCCAGCA---TGC--CCCAAC-TGCCCACTCTCCACTG---CCCCATTCCAGCCAAAGGCAT-CCCCACTCAGCCCATAGAGGAGTATCCCTGTCCCAGCCACACCCCACTTTGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 410878 145 + 1231380 GAAGTCCCTGGCC---TGGGGTCCCCTGGACTTGGCTCTTCCTTCCAGCA---TGC--CCCAAC-TGCCCACTCTCCACAG---ACCCATTCCAGCCGAAGGCAC-CCCCACTCAGCCCGTAGAGGAGTGTCCCTGTCCCAGCCACACCCGACTTCGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1968247 144 + 11732439 GCAGCCCCTGGCC---TGGGGTCCCCTGGACTTGGCTCTTCCTTCCAGCA---TGC--CCCAAC-TGCCCACTCTCCACTG---CCCCATTCCAGCCGAAGGCAC-CCCCACTCAGCCCATAGAGGAGTGTCCCTGTCCCAGCCACACCCC-CTTCGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181498 116 + 22939663 ---GCTCCTGCCTCCGTGGGTCCTCCTGGACTCAGCTC------CCAGAA----GCTGCCTGGC---CCTACTCTCCAACAAGTCCCCACTGCA-------------CCCACTCGGGCCACAG-GGAGAGTC---ATGCC--CCA-------CTCCAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123442 127 + 182113224 GGAGCCCCCAACC---TAGCATCCTT---------TACTATCTCCCAAAAGTTTAT--CTCAGCCCTTCCCTTCTTCAGTGTG-CTCCATTTCAGTCTATTGTGCATCCCACTGAGACCATAGGAGA-----CCTGTCCCA-----------TCTCAA i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109286684 179 - 110113093 I e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=2292535.000000 s hg38.chr20_KI270871v1_alt 45810 237 + 58661 TCCCAGAAGCATGTGGAGAAGCTGGGTGGGAATGGCAGCCAGCATA-----GGCGAGCCCCAGGCCCTGAAGATAGAC-CCCACCCTGGCCTGGCCCTCGAGGCC---GCTGCAGTGC--CTCATGGTGGACCCCACGCGACccatccaccctgctcccctcctgccctcagcaaacgc----------cgtccctgccccagggcctttgcacgtgcacttcctgctgcctg------gaatcctctcctacccgcaggtccc s panTro5.chr20 65621326 237 + 66533130 TCCCAGAAGCATGTGGAGAAGCTGGGTGGGAATGGCAGCCAGCATA-----GGTGAGCCCCAGGCCCTGAAGATAGAC-CCCACCCTGGCCTGGCCCTCGAGGCC---GCTGCAGTGC--CTCATGGTGGACCCCACACGACccatccaccctgctcccctcctgccctcggcaaacgc----------cgtccctgccccagggcctttgcacatgcacttcctgctgcctg------gaatcctctcctacccgcaggtccc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381483 237 + 62195757 TCCCAGAAGCATGTGGAGAAGCTGGGTGGGAATGGCAGCCAGCATA-----GGTGAGCCCCAGGCCCTGAAGATAGAC-CCCACCCTGGCCTGGCCCTCGAGGCC---GCTGCAGTGC--CTCATGGTGGACCCCACACGACccatccaccctgctcccctcctgccctcggcaaacgc----------cgtccctgccccagggcctttgcacgtgcacttcctgctgcctg------gaatcctctcctacccgcaggtccc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 795883 237 - 1017659 TCCCAGAAGCATGTGGAGAAGCTGGGTGGGAATGGCAGCCAGCATA-----GGCGAGCCCCAGGCCCTGAAGATAGAC-CCCACCCTGGCCTGGCCCTCGAGGCC---GCTGCAGTGC--CTCATGGTGGACCCCACGCGACccatccaccctgctcccctcctgccctcggcaaacgc----------tgtccctgccccagggcctttgcacgtgcacttcctgctgcctg------gaatcctctcctacccgcaggtccc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109286863 237 - 110113093 TCCCAGAAGCATGTGGAGAAGCTGGGTGGGAATGGCGGCCGGCATA-----GGCGAGCCCCAGGCCCTGAGAACAGAC-CCCGCCCTGGCCCGGCCCTCAAGGCC---ACTGCAGTGC--CTCATGGTGGATCCCAGGCGACccatccacccttctcctctcctgccctcagcaaacgc----------cctccctgccccagggcctttgcatgtgcacttcctgctgcctg------gaatcctctcctactcgtaggtccc i nomLeu3.chr13 I 179 C 0 s rheMac8.chr10 92005450 237 - 92844088 TCCCAGAAGCAGGCAGAGAAGCTGGGTGGGAATGGCGGCTGGCATA-----GGCGAGCCCCAAGCCCTGAGGACAgac-cccgccctggcctggccctcgaggcc---tctgccgtcc--ctcatggtggaccccatgcaacccatccaccctgctcccgtcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcacgtgcgcttcctactgcctg------gaatcctctcctccccacaggtccc i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95654706 237 + 96509753 TCCCAGAAGCAGGCAGAGAAGCTGGGTGGGAATGGCGGCTGGCATA-----GGTGAGCCCCAAGCCCTGAGGACAgac-cccgccctggcctggccctcgaggcc---tctgccgtcc--ctcatggtggaccccatgcaacccatccaccctgctcccgtcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcacgtgcgcttcctactgcctg------gaatcctctcctccccacaggtccc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16105485 237 - 16982598 TCCCAGAAGCAGGCAGAGAAGCTGGGTGGGAATGGCGGCTGGCATA-----GGCGAGCCCCAAGCCCTGAGGACAgac-cccgccctggcctggccctcgaggcc---tctgccgtcc--ctcatggtggaccccatgcaacccatccaccctgctcccgtcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcacgtgtgcttcctactgcctg------gaatcctctcctccccacaggtccc i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2953627 237 - 3785965 TTCCAGAAGCAGGCAGAGAAGCTGGGTGGGAATGGCGGCCAGCATA-----GGCGAGCCCCAAGCCCTGAGGACAGAC-Cccgccctggcctggccctcgaggcc---tctgccgtcc--ctcatggtggaccccatgcaactcatccaccctgctctcgtcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcacgtgcgcttcctactgcctg------gaatcctctcctccccataggtccc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621362 237 - 90373283 TCCCAGAAGCAGGCGGAGAAGCTGGGTGGGAATGGCGGCCGGCATA-----GGCGAGCCCCAAGCCCTGAGGACAGAC-Cccgccctggcctggcccttgaggcc---tctgccgtcc--ctcatggtggaccccacgcaacccatccaccctgctcccgtcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcacgtgcacttcctactgcctg------gaatcctctcctccccacaggtccc i chlSab2.chr2 C 0 I 55 s manLeu1.NW_012104365v1 5504677 237 + 6149316 TTCCAGAAGCAGGCAGAGAAGCTGGGTGGGAATGGCGGCCAGCATA-----GGCGAGCCCCAAGCCCTGAGGACAGAC-Cccgccctggcctggccctcgaggcc---tctgccgtcc--ctcatggtggaccccatgcaacccatccaccctgctcccatcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcacatgcgcttcctactgcctg------gaatcctctcctccccacAGGTCCC i manLeu1.NW_012104365v1 C 0 I 6468 s colAng1.NW_012114444v1 4732551 237 - 5823884 TCCCAGAAGCAGGCGGAAAAGCTGGGTGGGAATGGCGGGCGGCATA-----GGCGAGCCCCAAGCCCTGAGGACAGAC-CCCGCCCTGGCCTGGCCCTCGAGGCC---TCTGCAGTCC--CTCATGGTGGACCCCACGCAACccatccaccctgctcccgtcctgccctcagcaagcgc----------cctccctgcctcagggcctttgcatgtgcccttcttactgcctg------gaatcctctcctacccacaggtccc i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57443927 239 + 159171411 TCCCAGAAGCAGGCGGAGAAGCTGGGTGGAAGTGGCAGCCGGCCTA-----GGCGAGTCCCAGGCCCTGAGGACAAA--CCCGCCCCGGCCTGGCCCTCAAGGCCATTGTTGCAGTCC--CCCATGGTGGACCCCACACAAtccactcacccagctcccctcctgtcttaggcaagcgc----------ccaccctgcccccggacctttgcacatgtgcttcctgctgcctg------gaatcctctcccacctgcatgtccc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15562232 225 + 16356641 TCCCAGAAGCAGGTGGAGAAGCTGGGTGGGAGTGGCAGCCAGCCTA-----GGTGAGCCCCAGGCCCCGAGCACAGA--CCCGGCCCGGCCTGGCCCTGGAGGCC---GCTGCAGTCC--CCCGTGGTGGACCCCGTGCGACCCACTCACCCGGCTCCCCTCCTGCCTCAGGCAAGCGC----------cctccctgcccctggatctttacacacgcacgtcctgctgcctg------gaatcctctcccgc----------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 411023 236 + 1231380 TCCCAGAAGCAGGCAGAGAAGCTGGGTGGGAGCGGCGGCCAGCCTA-----GGCAAGCCCCAGGCCCTGAGCACAGA--CCCGGCCCGGCTTGGCCCTTGAGGCC---GCTGCAGTCC--CCCATGGTGGACcccacgcgatccactcacccggctcccctcctgcctcaggcaagcgc----------cctccctgcccccggacctttgcacacgaacttcctgctgcccg------gaatcctctcccacccgcacgtccc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1968391 236 + 11732439 CCCCAGAAACAGGCGGAGAAGCTGGGTGGGAGTGGCGGCTGGCCTA-----GGCGAGCCCCAGGCCCTGAGGACAGA--CCCGCCCCAACCTGGCCCTCGAGGCC---GCTGCAGTCC--CCCATGGTGGCCCCCAGGCGAtccactcacccagctcccctcctgccttaggcaagtgc----------cctccctgcccccagacctttgcacacgcacctcctgctgcctg------gaatcgtctcccacccgcacatcct i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181614 185 + 22939663 GCCCAGAAGCAGCCAGA----CCAAGTGAGCCCTGC--CCATACCT-----GCCCAGCCCCTA-CTCTGAGGACAGACACAGGCCCTGGCCTGGCCCTCGAGGCT---G--GCAGTCCTGCTCCTGGTG--------------------CCCTGTGTCTGTCc----------------------------------ctccagggccgtc-cacatgcttttcttgctgccc-------aaatcctgttccatccgcatgtccc i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123569 237 + 182113224 TCCCAGGAGCAGCCAAAGAGCTGTGGTGGAAATGGCAGTCAGCTCACATCTTACCTGCTTGCAGCTCTATG--------CTGGCCCCGGT---GCCCTAAGAGCC----TGGCCATAG--C---TGGTGTACCT------AACTTTTCTTCTTGCTCCTTTTCTGCTCTTTCTCAGCCTCACAACAACACCTCCATTCCTCGGGGCTTTAGTGCAC-CTCCTTTTGATACCTGGTAGTAGAGCCTCCTTCTACACACATAACCC i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=415619.000000 s hg38.chr20_KI270871v1_alt 46047 50 + 58661 agag---ccg------------------------------------------------------cc-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga s panTro5.chr20 65621563 50 + 66533130 agag---ccg------------------------------------------------------cc-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381720 50 + 62195757 agag---ccg------------------------------------------------------cc-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796120 50 - 1017659 agag---ccg------------------------------------------------------cc-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287100 50 - 110113093 aggg---ccg------------------------------------------------------cc-----------gcctcatcccccaggcttcaatctcag-gtcactttctttga i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92005687 49 - 92844088 cggg---ccg-------------------------------------------------------c-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga i rheMac8.chr10 C 0 I 317 s macFas5.chr10 95654943 49 + 96509753 cggg---ccg-------------------------------------------------------c-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga i macFas5.chr10 C 0 I 112 s macNem1.NW_012014244v1 16105722 49 - 16982598 cggg---ccg-------------------------------------------------------c-----------ccctcatcccccaggcttcaatctcag-gtcactttctctga i macNem1.NW_012014244v1 C 0 I 428 s cerAty1.NW_012001373v1 2953864 104 - 3785965 cggg---ccgcccctcatcccccaggcttcaatctcaggtcactttctctgaggtccccggccgcc-----------ccctcatcccccaggcttcaatctcag-gccactttctctga i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89621654 50 - 90373283 cggg---ccg------------------------------------------------------cc-----------ccctcatcccccaggcttcaatctcag-gccactttctctga i chlSab2.chr2 I 55 C 0 s colAng1.NW_012114444v1 4732788 50 - 5823884 cggg---ccg------------------------------------------------------cc-----------tcctcatcccccagacttcaatctcag-gtcactttctctga i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57444166 53 + 159171411 agggtcgcca------------------------------------------------------cc-----------tcctcattccccaggcttcattctcag-gtcaccttttctga i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15562457 46 + 16356641 -------ccg------------------------------------------------------cc-----------tccccattccccaggcttcattctcag-gtcaccctctctga i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 411259 53 + 1231380 ggggtcgccg------------------------------------------------------cc-----------tcctcattccccaggcttcattctcag-gtcaccctctctga i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1968627 53 + 11732439 ggggtcgccg------------------------------------------------------cc-----------tcctcattccccaggcttcattctcag-gtcaccttctctga i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181799 51 + 22939663 aggg---ctg------------------------------------------------------cc-----------tcctccttgccctggcttcactgtcagtgtcaccttctccaa i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123806 53 + 182113224 AAGG---CCA------------------------------------------------------TCTCTTCTTCAGACCCTCCTTCCTCAGGCAT--------G-CTCACTTTCACTGA i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I a score=152464.000000 s hg38.chr20_KI270871v1_alt 46097 33 + 58661 -aaggctgcccgacc-----------atcccttccccgggcagcc s panTro5.chr20 65621613 33 + 66533130 -aaggctgcccgacc-----------atcccttccccgggcagcc i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381770 33 + 62195757 -aaggctgcccgacc-----------atcccttccccgggcagcc i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796170 33 - 1017659 -aaggctgcccgacc-----------atcccttccccgggcagcc i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287150 33 - 110113093 -gaggctgcccgacc-----------ctcccttccccgggcagcc i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95655104 32 + 96509753 -CAGGCTGCCTGACC-----------CTCCCTTCCCTGGGCAG-C i macFas5.chr10 I 112 C 0 s cerAty1.NW_012001373v1 2953969 31 - 3785965 --aggctgcctgacc-----------ctcccttcccTGGGCAG-C i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89621704 32 - 90373283 -caggctgcctgacc-----------ctcccttcccTGGGCAG-C i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4732838 33 - 5823884 -caggctgcccgacc-----------ctccCTTCCCTAGGCAGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57444219 32 + 159171411 -gaagctacctgacc-----------cttcatcacccgga-ggcc i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15562503 32 + 16356641 -gaagctgcccgacc-----------ctccctcacccaga-ggcc i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 411312 32 + 1231380 -gaagctgcctgacc-----------ctccCTCACCCGGA-GACC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1968680 32 + 11732439 -gaagctgcccgacc-----------ctccctcacccaga-ggcc i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181850 29 + 22939663 -gaagctgcctagcc--------------cccACCCTAGGCAG-C i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181123859 45 + 182113224 GGACACAGCCTCATCTGCTCTGCCATCTCCAATGCCCAGGAGGCC i mm10.chr2 C 0 I 1312 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e macNem1.NW_012014244v1 16105771 428 - 16982598 I e rheMac8.chr10 92005736 317 - 92844088 I a score=884762.000000 s hg38.chr20_KI270871v1_alt 46130 176 + 58661 cccaagtctccctggtgtattctctccagggccctgagcctgaccgagcactgtccccccagagcagcggtctgctcgccctcccggaggcagga-ccccacatcctctgctcagacagtggccccaagtgcccagcccagaacctgcacagagGCGTCT-----CCCCACATCCAGGCAGG s panTro5.chr20 65621646 176 + 66533130 cccaagtctccctggtgtattctctccagggccctgagcctgaccgagcactgtcccaccagagcaggggtctgctcgccctcccggaggcagga-ccccacatcctctgctcagacagtggccccaagtgcccagcccagaacctgcacagagGGGTCT-----CCCCACATCCAGGCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381803 176 + 62195757 cccaagtctccctggtgtattctctccagggccctgagcctgaccgagcactgtcccaccagagcaggggtctgctcgccctcccggaggcagga-ccccacatcctctgctcagacagtggccccaagtgcccagcccagaacctgcacagagGGGTCT-----CCCCACATCCAGGCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796203 176 - 1017659 cccaagtctccctggtgtattctctccaggaccctgagcctgaccgagcactgtccccccagagcaggggtctgctcgccctcccggaggcagga-ccccacatcctctgctcagacagtggccccaagtgcccagcccagaacctgcacagagGGGTCT-----CCCCACATCCAGTCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287183 174 - 110113093 cccaactctctctggtgtattctctccagggccctgagcccaaccgagcactgtcctcccagggcaggggtctgctcaccctcccggaggcagga-ccccacatcttctgctc--acggtggccccaagtgcccagcccagaacctgcacggaaggGTCA-----CCCCACATCCAGGCAGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95655136 173 + 96509753 CCCAACTCTCTCTGGTGTATTCTCTCCAGGGCCCTAAGCCCAACCAAGCACTGTCCCCCCAGGGC-GGGGTCTGCTCGCCCTCCCAGAGGCAGCACCCCCACATCCTCTGCTC--ACAGTGGCCCCAAGTGCCCAGCCCAGAACCTGCACAGA-GGGTCA-----CCCCACATCCAGGCAGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2954000 173 - 3785965 CCCAACTCTCTCTGGTGTATTCTCTCCAGGGCCCTAAGCCCAACCAAGCACTGTACCCCCAGGGC-GGGGTCTGCTCGCCCTCCCAGAGGCAGCACCCCCACATCCTCTGCTC--ACAGTGGCCCCAAGTGCCCAGCCCAGAACCTGCACAGA-GGGTCA-----CCCCACATCCAGGCAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621736 173 - 90373283 CCCAACTCTCTCTGGTGTATTATCTCCAGGGCCCTAAGCCCAACCAAGCACTATCCCCCCAGGGC-GGGGTCTGCTCGCCCTCCCAGAGGCAGCACCCCCACATCCTCTGCTC--ACAGTGGCCCCAAGTACCCAGCCCAGAACCTGCACAGA-GGGTCA-----CCCCACATCCAGGCAGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4732871 173 - 5823884 CCCAACTCTCTCTGGTGTATTCTCTCCAGGGCCCTGGGCCCGACCAAGCACTGT-CCCCCAGGGT-GGGGTCTGCTCGCCCTCCCAGAGGCAGCACCCCCACATCCTCTGCTC--ACAGTGGCCCCAAGTGCCCAGCCCAGAACCTGCACAGAGGGGTCA-----CCCCACATCCAGGCAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57444251 159 + 159171411 cccaactctc------------tctccagGGGCCTGAGCCCCAC--AGGGCTTTACCCACAGGGCAGGGGTCTGCTCACCCTCCCGGAGGGAGG--CCCCACATCCTCTCCTC--ACACTGGCTCAGAGTGCACAGCCCAGAACCTGCATGGAGGGGTCA-----CCCCACATCCAGGCTGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15562535 159 + 16356641 cccaactctc------------tctccAGGGGCCTGAGCCCCAC--AGGGCTGTACCCACAGGGCAGGGGTCTGCTCACCCTCCCAGAGGGAGG--CCCCACATCCTCTCCTC--ACACTGGCTCCAAGTGCACAGCCCAGAACCTGCATGGAGGGGTCA-----CCCCACATCCAGGTTGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 411344 157 + 1231380 CCTAA--CTC------------TCTCCAGGGCCCTGAGCCCCAC--AGGGCTGTACCTGCAGGACAGGGCTCTGCTCACCCTCCTGGAGGGAGG--CCCCACATCCTCTCCTC--ACACTGGCTCCGAGTGCACAGCCCAGAACCTGCCCGGAGGGGTCA-----TCCCACATCCAGGCTGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1968712 160 + 11732439 cccaactctc------------tctccAGGGGTCTGAGCCCCAC--AGGGCTAAACCCACAGGGCAGGGGTTTGCTCACCCTCCCGGAGGGAGG--CCCCACATCCTCTCTTC--CCACTGGCTCCGAGTGCACAGCCCAGAACCTGCATGGAGGGGTCA----CCCCCACATCCAGGCTGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22181879 117 + 22939663 CCTGACTGTGTCCTGGTCACTCTCTT-----------------------GTTGTCTCTTCAG-------------TCACTGTCCC-TAGGCAGGG-C----------CTGCCC-------------AGGAGCCCAGCCCAGAAGTTGCAGTGTGGGGTTGGAGGGAGCCACATATGAG---- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e macNem1.NW_012014244v1 16105771 428 - 16982598 I e rheMac8.chr10 92005736 317 - 92844088 I a score=931154.000000 s hg38.chr20_KI270871v1_alt 46306 368 + 58661 CGGCAGCCAAGACCCTGCCCTGGCCAAGTTGAACCT-GCTCGAGAGCCCAGGCTGGCAGCCAGGCCTGGGGCCCACACTCAG---GCGTCACTGCACCGCCTTCCGCACAGCGGGAAGAGCAAGGCGAGGGCTCCGGGAGGGGGCCTGTGTGGGTCTGGGGGGCTGAGATGAGG-AGGGCACGGCCCACCCAGGGCACCTGGCCACATGTGACGCAGGCTTCGTCCCAAGAGGAATGACGAAATGTCCAGAGACACTCACCGCGTGTCCACAGCAGCCTCACGGCAGACGCAACCCAACATCCAGTTGGTGGGTGGGTAGATAAACTGAGGTCCGTCCGTGCGGCCACAGGAAGGACGAGGCAGCGGCCCCCA s panTro5.chr20 65621822 368 + 66533130 CGGCAGCCAAGACCCTGCCCTGGCCAAGTTGAACCT-GCTCGAGAGCCCAGGCTGGCAGCTAGGCCTGGGGCCCACACTCAG---GCGTCACTGCACCGCCTTCCGCACAGCGGGAAGAGCAAGGCGAGGGCTCCGGGAGGGGGCCTGTGTGGGTCTGGGGGGCTGAGATGAGG-AGGGCACGGCCCACCCAGGGCACCTGGCCACATGTGATGCAGGCTTCGTCCCAAGAGGAATGACGAAATGTCCAGAGACACTCACCGCGTGTCCACAGCAGCCTCACGGCAGACGCAACCCAACATCCAGTTGGTGGGTGGGTAGATAAACTGAGGTCTGTCCGTGCGGCCACAGGAAGGACGAGGCAGCGGCCCCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61381979 368 + 62195757 CGGCAGCCAAGACCCTGCCCTGGCCAAGTTGAACCT-GCTCGAGAGCCCAGGCTGGCAGCTAGGCCTGGGGCCCACACTCAG---GCGTCACTGCACCGCCTTCCGCACAGCGGGAAGAGCAAGGCGAGGGCTCCGGGAGGGGGCCTGTGTGGGTCTGGGGGGCTGAGATGAGG-AGGGCACGGCCCACCCAGGGCACCTGGCCACATGTGATGCAGGCTTCGTCCCAAGAGGAATGACGAAATGTCCAGAGACACTCACCGCGTGTCCACAGCAGCCTCACGGCAGACGCAACCCAACATCCAGTTGGTGGGTGGGTAGATAAACTGAGGTCCGTCCGTGCGGCCACAGGAAGGACGAGGCAGCGGCCCCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796379 368 - 1017659 TGGCAGCCAAGACCCTACCCTGGCCAAGTTGAACCT-GCTCGAGAGCCCAGGCTGGCAGCTAGGCCTGGGGCCCACACTCAG---GCGTCACTGCACCGCCTTCCGCACAGCGGGAAGAGCAAGGCGAGGGCTCCAGGAGGGGGCCTGTGTGGGTCTGGGGGGCTGAGATGAGG-AGGGCACGGCCCACCCAGGGCACCTGGCCACATGTGACGCAGGCTTCGTCCCAAGAGGAATGACGAAATGTCCAGAGACACTCACCGCGTGTCCACAGCAGCCTCACGGCAGACGCAACCCAACATCCAGTTGGTGGGTGGGTAGATAAACTGAGGTCCGTCCGTGCGGCCACGGGAAGGACGAGGCAGCGGCCCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287357 365 - 110113093 CGGCAGCCGAGACCCCGCCCTGGCCAAGCTGAACCC-GCTCGAGAGCCCGGGACGGCAGCTGGGCCTGGGGCCCACACTCGG---GTGTCACCGCACCGCCTTCCGCACAGTGGGAAGAGCAAGGCGAGGGCCCCGGGAGGGGGCCTGTGTGGGTCTGGGGGGCTGAGATGAGG-CGGGCACGGCCCACCCAGGGCACCTGGCCACACGTGACGCAGGCTTCGTCCCAAGAGGAATGACG---TGTCCAGAGACACTCACTGCGGGTCCACAGCAGCCTCACGGCGGACGCAGCCCAACATCCAGTGGGTGGGTGGGTAGATAAACTAAGGTCCATCCCTGCGGCCACAGGAAGGATGAGGCAGCGACCCCTA i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57444410 341 + 159171411 CGGCAGCTAAAACCCTGCCCTGGCCAAGCTGTGCTT-GCTCAAGAGCCCAGGCCAGCAGCTGGGCT-GGGGCCCA----------------------CACCTTCCGAACAGCAGGAAGAGCGGGTCGAGGGACAAGGGAGGGGGCCTGTGTGGGTCTGGGGCACAGAGATGAGGAGGGGCA--CCCCACCCAGGGCA-CTGAACACACGTGACACAGGCCTCATCCCAAGAGGAATGACAGCGTGT-CAGAGACGCTCATGGCCTGTCCACAGCAGCCTCATAGCGGACGCAACCCAACGTCCAGCC----AGTGAGTGGACAAACTGAGGTCCACCCGTAcagccatggggaggatgaggcagtgactctcg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15562694 359 + 16356641 CAGCAGTTAGA--CCTGCCCTGGCCAAGCTGAGCCC-GCTCGAGAGCCCAGGCCGGCGGCTGGGCC-GGGGCCCACACCCAG---GCATGACGGAACCACCTTCCGTACAGCAGGAAGAGCAGGGCGAGGG-CCCGGGAGGGGGCCTGTGTGGGTTGGGGGCGCAGAGATGAGAAGGGGCACGCCCCACCCAGGGCA-CTGAACGCACGTGGCGCAGGCCTCGTCCCAAGAGGAATGATGGTGTGT-CAGAGACGCTCA-GGCCTGTCCACGGCAGCCTCACGGCAGACGCAACCCAACGTCCAGCCGGTGAGTGAGTGGACAAC---AGGCCCACCTGTCCGGCCACAGGGAGGATGAGGCAGTGACTCTCG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 411501 364 + 1231380 CGGCAGCTAAGACCCTGCCCTGGCCAAGCTGAGACT-GCTCGAGAGCCCAGGCCGGCAGCTGGGCC-AGCGCCCACACCCAG---GCATGAAGGCACCGCCTTCCAAACAGCAGGAAGAGCAGGGCGAGGG-CCCAGGAGGAAG-CTGTGTGGGTCAGGGGCGCAGAGATGAGGAGGGGCACGCCCCACCCAGAGCA-CTGAACACAGGTGACGCAAGTCTCGTCCCAAGAGGAATGACAGCGTGT-CAGAGATGCTCATGGCCTGTCCACGGCAGCCTGACGGCGGACGAAACCCAACATCCAGCCAGTGAGTGAGTGGACGAACTGAGGTCCACCCATCTGGCCACGGGGAGGATGAGGCAGTGACTCTCG i cebCap1.NW_016107870v1 C 0 I 92 s aotNan1.NW_018500483v1 1968872 365 + 11732439 CGGCAGCTAAGACCCTGCCCTGGCCAAGCTGAGCCC-GCTCGAGAGCCCAGGCCGGCAGCTGGGCC-AGGGCCCACACCCAG---GCATGACGGCACCGCCTTCCGAACAGCAGGAAGAGCAGGGCAAGGGCCCCAGGAGGGGGCCTGTGTGGGTCGGGGGCGCAGAGATGAGG-GGGGCACACCCCACCCAGGGCA-CTGAACACACGTGACGGAGGCCTCGTCCCAAGAGGAATGACGGCGTGT-CAGAGACGCTCATGGCCTGTCCACGGTAGCCTCACGGCAGACGCAACCCAACGTCCAGCCAGTGAGTGAGTGGACAAACTGAGGTCCACCCGTACGGCCACGGGGAGGATAAGGCAGTGACTCTCG i aotNan1.NW_018500483v1 C 0 I 92 s otoGar3.GL873542 22181996 297 + 22939663 CCTCCACCAAAACTGTGA---AGCCAAGCCGAGTGTGGCTTGAGAGCACAGGCTA-CAGTCAGCTT-GGAGTCAGCGCTGAGCGCAGGTCACTGCACTACAACTTACACCATGGG-AGGGAAAGAAGAGGAGCACAAAGGGGA------------TGGAGGTGGTGGGATGCTG-----CATGGCCTGC---GGGGG-CTGAG---------------------ACCAGGACAAGCACCCACATGTCC----ACGCCCA-----GGCTCTCAGCAGCC------CAGACATGCACTAGCAGGCAG------GGGGAACAGACAAACCACAGCCCCTCCACATGTC---AGGAAGAATGAGGTGGCTGCT---- i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=82992.000000 s hg38.chr20_KI270871v1_alt 46674 71 + 58661 GACACGGAGAGGATGAAGGAGTACCCTAaacacgaaggaacctgagggcaggctcggcaaggaaagccagg s panTro5.chr20 65622190 71 + 66533130 GACACGGGGAGAATGAAGGAGTACCCTAAACACGAAGGAACCTGAGGGCAGGCTCGGCAAGGAAAGCCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61382347 71 + 62195757 GACACGGGGAGAATGAAGGAGTACCCTAaacacgaaggaacctgagggcaggctcggcaaggaaagccagg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796747 71 - 1017659 GACACGGGGAGGATGAAGGAGTACCCTAAACACGAAGGAACCTGAGGGCAGGCTCGGCAAGGAAAGCCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287722 70 - 110113093 AACACAGAGGAGATGAAGGAGTACCCTAAACACGGAGG-ACCTGAGGGCAGGCTCGGCAAGGAGagccagg i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57444751 49 + 159171411 ----------------------accccacacagggagggacccaagagcaggctcagcacagagtgccgga i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15563053 49 + 16356641 ----------------------ATCCCACGCAGGGACGGACCCAAGGGCAGGCCCAGCCCGGAGCACCGGA i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22182293 48 + 22939663 GGCACAG-----------------------CATGGGGGCGCTCGAGGACGTGCCCTGTGAGGAAGGATAGG i otoGar3.GL873542 C 0 I 405 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e aotNan1.NW_018500483v1 1969237 92 + 11732439 I e cebCap1.NW_016107870v1 411865 92 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=61944.000000 s hg38.chr20_KI270871v1_alt 46745 60 + 58661 cacaaaacggcaccacgatgacaactccacttacacgaaacatccgaagcaaacaggcca s panTro5.chr20 65622261 60 + 66533130 CACAAAACGGCACCACGATGACAGCTCCACTTACACGAAACGTCCGAAGCAAACAggccg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61382418 60 + 62195757 cacaaaacggcaccacgatgacagctccacttacacgaaacgtccgaagcaaacaggccg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796818 60 - 1017659 CACAAAACGGCACCACGATGACAACTCCACTTACACGAAACGTCCGAAGCAAACAggccg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287792 60 - 110113093 cacaaaacggcaccacgacaacaactccacttacatgaaacatccgaaacaaacaggctg i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57444800 43 + 159171411 cacaaaagggcac--agacgcca-ccccacccacaagaaacatcca-------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15563102 42 + 16356641 CACAAAAGGGCAC--GGACGCCA-CCCCACCCACGAGAAACgt-cg-------------- i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e aotNan1.NW_018500483v1 1969237 92 + 11732439 I e cebCap1.NW_016107870v1 411865 92 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I e otoGar3.GL873542 22182341 405 + 22939663 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=808028.000000 s hg38.chr20_KI270871v1_alt 46805 384 + 58661 ggcccggcggccacgcctgtactcccagagcttggcgaggccgaggcaggaggacagcttgggcctaggagttcgagaccagcctgggtaacacaatgagaccccatctctacaaatgat----ttaagttagccagatgtggtggggcacctgcagtcccagcgactcgggagacggaggct-ggaggatggctcgagtccaggaggtccaggctgcagtgagctgtgattgagacactgcactccagcctgggcgaaaagagaccctgcctcaaaaataaataaattaaataaaataaaataacaggcacgtcacagagacaggcaggagaccggcaactgccagggacagggtggggcacacgatggcagagggcaagagtgtcca s panTro5.chr20 65622321 384 + 66533130 ggcccggaggccacgcctgtactcccagagcttggcgaggccgaggcaggaggacggcttgggcctaggagttcgagaccagcctgggtaacacaatgagaccccatctctacaaatgat----ttaagttagccagatgtggtggggcacctgcagtcccagcgactcgggagacggaggct-ggaggatggctcgagtccaggaggtccaggctgcagtgagctgtgattgagacactgcactccagcctgggcgaaaagagaccctgcctcaaaaataaataaattaaataaaataaaaTAACAGGCACGTCACAGAGACAGGAAGGAGACCGGCAACTGCCAGGGACAGGGTGGGGCACACGATGGCAGAGGGCAAgagtgtcca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61382478 384 + 62195757 ggcccggcggccacgcctgtactcccagagcttggcgaggccgaggcaggaggacagcttgggcctaggagttcgagaccagcctgggtaacacaatgagaccccatctctacaaatgat----ttaagttagccagatgtggtggggcacctgcagtcccagcgactcgggagacggaggct-ggaggatggctcaagttcaggaggtccaggctgcagtgagctgtgattgagacactgcactccagcctgggcgaaaagagaccctgcctcaaaaataaataaattaaataaaataaaataacaggcaggtcacagagacaggaaggagaccggcaactgccagggacagggtggggcacacgatggcagagggcaagagtgtcca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 796878 384 - 1017659 ggcccggcggccacgcctgtactcccagagcttggcgaggccgaggcaggaggacagcttgggcctaggagttcgagaccagcctgggtaacacagtgagaccccatctctacaaatgat----ttaagttagccagatgtggtggggcacctgcagtcccagtgactcgggagatggaggct-ggaggatggctcgagtccaggaggtcaaggctgcagtgagctgtgattgagacactgcactccagcctgggtgaaaagagaccctgcctcaaaaataaataaataaaataaaataaaaTAACAGGCACGTCACAGAGACAGGAAGGAGACCGGCAACTTCCAGGGACAGGGTGGGGCACACGATGGCAGAGGGCAAgagtgtcca i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109287852 380 - 110113093 ggcgcggtggccacgcccatactcccagagcttggcgaggccgaggcaggaggatagcttgggcctaggagttcgagaccagcctgggtaacacagtgagaccccatctctacaaatgat----ttaagttagccagatgtggtggggcacctgcagtcccagcgactcgggagatggaggccgggaggatggcccgagtccaggaggtccaggctgcagtgagctgtgactgagacactgcactccagcctgagcgaaaagagaccgtgcctcaaaaataaat-----aagtaaaataaaataacaggcacgtcacagagacaggaaggagaccagcaactgccggggacagggcggggtgcacgatggcagagggcaagaatgtccg i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57444843 327 + 159171411 ggcatggtggcctcgcctgtactcccagcgctttgtgaggc-------------------------------ttgagaccagcctgggtaacatagtgagaccccatcttcacaaataatttgtttaaattggccagatgtggc-gggcacctgcagtcccatctactccggaggcagaggcc-tggggtt-ccctgagtccaggaggtcagggctgcagtgagctgtgattgcgacaccaccctccatcctgggccagaagagacccggtctcaaagataaata----aaataaaataa---aacaggcaagtcgcagagacaggaaggagaccagcggctgcggggg--gggggggggCGC-------------------GTGTCCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15563144 315 + 16356641 ggcacggcggccacacctgtactcccagcgctcggcgaggc-------------------------------tcgagaccagcctgggtgac--aaggagaccccacctttacaaatactttgtttacactggccagatgtggc-aggcatctgcagtcccatctactcgggaggcagaggcc-tggggat-ccccgagtccag--ggccggggctgcagtgagctgtgactgcgacgctgccctccagcctgggccaaaagagaccctgtctcaaagataaata----aaaTAGGATGA---AACAGGCAAGTCGCAGAGACAGGAAGGAGACCAGCGGCTGT----------GGGGGTCAC-------------------GTGTCCG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 411957 311 + 1231380 ggcacggcggccacacctgtactcccagcgcttttcgaggc-------------------------------tcgagaccagcctgggtaacacagtgagagcccacctttacaaatactttg-ttaaattggccagatgtggc-gggcacctgcagtcccatctactcaggaggcagaggcc-tggggat-ccccaagtccag--ggccggggctgcagcgagctgtgatttcgacactgccctccagcctgagccaaaagagaccctgtctcaaagataaata----aa-----atga---aaCAGGCAAGTGGCAGAGACAGGAAGGAGACCAGCGGCTGC----------GGGGGGCGC-------------------ATGTCCG i cebCap1.NW_016107870v1 I 92 C 0 s aotNan1.NW_018500483v1 1969329 306 + 11732439 ggcacggcgaccgtgcctgtactcctggcgctttgcgaggc-------------------------------tcgagaccagcctgggtaacatagtgagataccatctttacaaataatttgtttaaattggccagatgtggt-gggcacctgcagtcccatctactcggggggcagaggcc-tggggtt-ccctaagtccaggaggtcggggctgcagtgagctgtgattgcgacactgccctccagcctgggccaaaagagaccctatctcaaagataaata----aaataaaaTGA---AACAGGCAACTCGCAGAGACAGGAAGGAGACCAGCG-----------------------C-------------------GTGTCCG i aotNan1.NW_018500483v1 I 92 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e otoGar3.GL873542 22182341 405 + 22939663 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=324872.000000 s hg38.chr20_KI270871v1_alt 47189 114 + 58661 catggggtg---------acaagttttcaaatagggctgg-tggcggcagaccatcactaaattctccactctaaacgcctctgaattactcgctttaaaatgctatctgcatg-ttaggataat s panTro5.chr20 65622705 114 + 66533130 catggggtg---------acaagttttcaaatagggctgg-tggcggcagaccatcactaaattctccactctaaatgcctctgaattactcgctttaaaatgctatctgcatg-ttaggataat i panTro5.chr20 C 0 C 0 s panPan2.chr20 61382862 114 + 62195757 catggggtg---------acaagttttcaaatagggctgg-tggcggcagaccatcactaaattctccactctaaacgcctctgaattactcgctttaaaatgctatctgcatg-ttaggataat i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 797262 114 - 1017659 catggggtg---------acaagttttcaaatagggctgg-tggcggcagatcatcactaaattctccactctaaatgcctctgaattactcactttaaaatgctatctgcatg-ttaggataat i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109288232 114 - 110113093 catggggtg---------acaagttttcaaatagggctgg-tggcagcagaccatcactaaatcctccactccaaacgcctctgaatcactcactttaaaatgctatctgtatg-ttaggataat i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57445170 114 + 159171411 CGTGGGGTG---------ACAAGTTTTCAAATAGGGCTGG-TGGCGGCAGACCGTCACGAAATCCTCCACTCTAAACGCCTGTGGACTACTCACTTTAAAGTACTATATGCATG-TTGGGAGAAT i calJac3.chr5 C 0 I 305 s saiBol1.JH378156 15563459 114 + 16356641 CGtggggtg---------acaagttttcaaacagggctgg-tggtggcagaccgtcacgaaatcctccgctctaaacgcctgtgaactactcactttaaagtactatctgtatg-ttgggagaat i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 412268 109 + 1231380 CGTGGGGTG---------ACAAGTTTTCAAACAGGGCTGG-TGGAGGCAGACCGTCATGAAATCCTCCACT-----CACCTATGAGCTACTCACTTTAAAGTACTATCTGTATG-TTGGGAGAAT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1969635 114 + 11732439 CGTGGGGTG---------ACAAGTTTTCAAATGGGGCTGG-CGGCGGCAGACCGCCACGAACTCCTCCACTCTAAGCGCCTGTGAACTACTCACTTTAAAGTACTATGTGTACG-TTGGGAGAAT i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22182746 124 + 22939663 CGTGGGGTGTTTTAAGGAGTAAGTTTTAAGCCAGAGATAGCCAACGGTGCCTCATCATTGTGGACACAACGATACATCCCTG-GATTTACTTTCCCATAAACAGTGATTTTGTGATTAGGAAAAT i otoGar3.GL873542 I 405 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=446584.000000 s hg38.chr20_KI270871v1_alt 47303 176 + 58661 ttaacctc-tatttttaaa-aAAC-AAAATAAAC----CGTGTTGTCAAGGTCTGGGACAGCAA----------------------------------GCGCACACAGGTAACCTGCCTGCC---CATCAGTGGCTCTGTGCCTAGGGTGTCCACCCACCTGTGCCTCAGTTTCTCTCTG-AATAGGATAGCTTTGGGTGGGGAGAGTT-AACACTCACCAC s panTro5.chr20 65622819 176 + 66533130 ttaacctc-tatttttaaa-aAAC-AAAATAAAC----CGTGTTGTCAAGGTCTGGGACAGCAA----------------------------------GCACACACAGGTAACCTGCCTGCC---CATCAGTGGCTCTGTGCCCAGGGTGTCCACCCACTTGTGCCTCAGTTTCTCTCTG-AATAGGACAGCTTTGGGTGGGGAGAGTT-AACACTCACCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61382976 176 + 62195757 ttaacctc-tatttttaaa-aAAC-AAAATAAAC----CGTGTTGTCAAGGTCTGGGACAGCAA----------------------------------GCACACACAGGTAACCTGCCTGCC---CATCAGTGGCTCTGTGCCCAGGGTGTCCACCCACTTGTGCCTCAGTTTCTCTCTG-AATAGGACAGCTTTGGGTGGGGAGAGTT-AACACTCACCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 797376 177 - 1017659 ttaacctc-tatttttaaa-aAACAAAAATAAAC----CGTGTTGTCAAGGTCTGGGACAGCAA----------------------------------GCGCACACAGGTAACCTGCCTGCC---CATCAGTGGCTCTGTGCCTAGGGTGTCCACCCACCTGTGCCTCAGTTTCTCTCTG-AACAGGATAGCTTTGGGTGGGGAGAGTT-AACACTCACCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109288346 176 - 110113093 ttaacctc-tatttttaaa-aAAC-AAACTAAAC----CGTATTGTCAAGGTCTGGGACAGCAG----------------------------------GCGCACGCAGGCAACCTGCCTGCC---CATCAGTGGCTCTGTGCCCAGGGTGTCCTCCCACCTGTGCCTCGGTTTCTCTCTG-AATAGGACAGCTTTGGGTGGGCAGAGCT-AACGCTCACCAC i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57445589 177 + 159171411 TTAACTTC-TATTTTTAAA-AAAG-AAAATAAACAGAGCGTGTCGTCAGAGTCTGGGACAGCGA----------------------------------GTGCACGAGGGCAACCTGCCTGCC---CATCAGTGGCTCTGTGCCCAGGGTG----CCCACCTGTGCCTCAGTTTCTCTCTGGAACATGGCAGGTCTGGGGAGGGAGTGCC-GACGCTCACCAC i calJac3.chr5 I 305 C 0 s saiBol1.JH378156 15563573 211 + 16356641 ttaacttc-tatttttaaa-aGAG-AAAATAAACAGAGCGTGTCGTCAAGGTCTGGGACAGCTGCACCCTGCAGCACCGTTCGCAGCGGCAAAGTCCCATGCACGAGGGCAACCTGCCTGTC---CATCGGTGGCTCTGGGCCCAAGGCA----CCCACCTGTGCCTCAGTTTCTCTCTGGAACAGGGCAGGTCTGGGCAGGGGGTGCC-GACGCTTACCAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 412377 176 + 1231380 TTAACTTC--ATCTTTAAA-AGAG-AAAATAAACAGAGCGTGTCGTCAAGGTCTGGGACAGCGA----------------------------------GTGCACGAGGGCAACCTGCCTGCC---CTTCAGTGGCTTTGTGCCCAGGGCG----CCCACCTGTGCCTCAGTTTCTCTCTGAAACAGGGCAGGTCTGAGCAGGGGGTGCC-GATGCTCACCAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1969749 177 + 11732439 TTAACTTC-TATTTTTAAA-AGAG-AAAATAAACCGAGCGTGCCGTCAAGGTCTGGGACGGCGA----------------------------------GTGCATGAGGGCAACCTGCCTGCC---CATCAGTGGCTCTTTGCCCAGGGCG----CCCACCTGTGCCTCAGTTTCTCTCTGGAACAGGGCAGGTCTGGGCAGGGAGTGCC-GATGCTCACCAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22182870 145 + 22939663 TTCACTTCATATTCTCAAAGAAAG-AAAATAAAT-------------AGGGT---------CAA--------------------------------------ACTAGGAAGGCCTTCCTGGCAGGAGTGGGTGG-TCTGAGCCC----------CCAGGCAATGCC----TGCCTCTCTATAGCAGGACAGATTC-AGTAGAAAGAGCTGGACACTCAACTC i otoGar3.GL873542 C 0 I 109 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=332184.000000 s hg38.chr20_KI270871v1_alt 47479 129 + 58661 ACCTTGTCCCCTCCAGACTCCTCCAGTCCATGGTGCTGTTGTCTCGGTAGGAAGGCTGGAATGTGGACAGGTGCGTTTACACTACAGGAAGCAGACGGCACCCGGGGACCTTGTGAGCTGTAGAATCGC s panTro5.chr20 65622995 129 + 66533130 ACCTTGTCCCCTCTAGACTCCTCCAGTCCATGGTGCTGTTGTCTCGGTAGGAAGGCTGGAATGTGGACAGGTGCGTTTACACTACAGGAAGCAGACGGCACCCGGGGACCTTGTGAGCTGTGGAATCGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61383152 129 + 62195757 ACCTTGTCCCCTCTAGACTCCTCCAGTCCATGGTGCTGTTGTCTCGGTAGGAAGGCTGGAATGTGGACAGGTGCGTTTACACTACAGGAAGCAGACGGCACCCGGGGACCTTGTGCGCTGTGGAATCGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 797553 129 - 1017659 ACCTTGTCCCCTCCAGACTCCTCCAGTCCATGATGCTGTCATCTCGGTAGGAAGGCTGGAATGTGGACAGGTGCGTTTACACTACAGGGAGCAGACGGCACCCAGGGACCTTGTGAGCTGTGGAATCGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109288522 129 - 110113093 ATCTTGTCCCCTCCAGACTCCTCCAGTCCACGGCGCTGTCGTCCCAGTAGGAAAGCTGGAATGTGGACAGGTGCGTTTACACTACAGGGAGCAGACGGCGCCCGGGGACCTTGTGAGCTGTGGAATCGC i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57445766 129 + 159171411 ACCTCATCCCCTCCAGACTCCGAGAGTGGTCGGTGCTGCAGCCCCCGTAGGAAAGCTGGAGTGTGGACAGGTACATTTACACCCCAAGGAGCAGACGGCACCCAGGGGCCCTGTCAGCGGCGGAATCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15563784 127 + 16356641 ACCTCGTCCCCTCCAGACCCC--GAGTCGATGATGCTGCAGCCCCCGCAGGAAAGCTGCAGTGTGGACGGATACGTTTACACCCCAGGGAGCAGACAGCGCCCGGGGCCCCTGTGAGCTGCGGTATCGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 412553 129 + 1231380 ACCTCGTCCCCTCCAGACCCCGAGAGTCAATGGTGCTGCAGCCCCCGTGGGAAAGTTGGAGTGTGGACGGGTATGTTTACACCCCAGGGAGCAGGCAGCGCCCAGGGCCCCTGTGAGCTGTGGAATCGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1969926 129 + 11732439 ACCTCGTCCCCTCCAGACTCAGAGAGTTGACGGTGCTACAGCCCCCGCAGGAAAGCTGGAGTGTGGACGGGTACATTTACACCCCAGGGAGCAGACAGCGCCCGGGGCCCCTGTGAGCTGCAGAATCGC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e otoGar3.GL873542 22183015 109 + 22939663 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=776860.000000 s hg38.chr20_KI270871v1_alt 47608 279 + 58661 CCCTTCTTCTGTGGCTGAAGCTTGGCTCTGGCCCTGGCCA------GTGTCCCCATCCCAGCCCAGCCTACTCCTCCCCAAACCCGAGCCCCGGAGCTTCCCTGTCATGCACACCCCCATCCCCAGCACCTTT-GGGGACCCCTGCTTGGCCTGGCCTGGGCTCCTGACCCTGCAGGTCCCTC-CCTGGCCTTACCCAAGCCCTTAGCAGCTTTGGGGAGCAAAGGCTTCATGAGGT--------CCCAGGGGAGCTGGGGTGGAGAGGG-GCTCCC-CCCACCCTCAACAAGGGGG s panTro5.chr20 65623124 278 + 66533130 CCCTTCTTCTGTGGCTGAAGCTT-GCTCTGGCTCTGGCCA------GTGTCCCCCTCCCAGCCCAGCCTACTCCTCCCCAAACCCGAGCCCCGGAGCTTCCCTGTCATGCACACCCCCATCCCCAACACCTTT-GGGGACCCCTGCTTGGCCTGGCCTGGGCTCCTGACCCTGCAGGTCCCTC-CCTGGCCTTACCCAAGCCCTTGGCAGCTTTGGGGAGCAAAGGCTTCATGAGGT--------CCCAGGGGAGCTGGGGTGGAGAGGG-GCTCCC-CCCACCCTCAACAAGGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61383281 278 + 62195757 CCCTTCTTCTGTGGCTGAAGCTT-GCTCTGGCTCTGGCCA------GTGTCCCCCTCCCAGCCCAGCCTACTCCTCCCCAAACCCGAGCCCCGGAGCTTCCCTGTCATGCACACCCCCATCCCCAACACCTTT-GGGGACCCCTGCTTGGCCTGGCCTGGGCTCCTGACCCTGCAGGTCCCTC-CCTGGCCTTACCCAAGCCCTTGGCAGCTTTGGGGAGCAAAGGCTTCATGAGGT--------CCCAGGGGAGCTGGGGTGGAGAGGG-GCTCCC-CCCACCCTCAACAAGGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 797682 277 - 1017659 CCCTTCTTCTGTGGCTGAAGCTTGGCTCTGGCCCTGGCCA------GTGTCCCC-TCCCAGCCCAGCCTACTCCTCCCCAAACCCGAG-CCCAGAGCTTCCCTGTCATGCACACCCCCATCCCCAGCACCTTT-GGGGACCCCTGCTTGGCCTGGCCTGGGCTCCTGACCCTGCAGGTCCCTC-CCTGGCCTTACCCAAGCCCTTGGCAGCTTTGGGGAGCAAAGGCTTCATGAGGT--------CCCAGGGGAGCTGGGGTGGAGAGGG-GCTCCC-CCCACCCTCAACAAGGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109288651 279 - 110113093 CCCTTCTTCTGTGGCTGAAGCTTGGCTCCGGCCCTGGCCA------GTGCCCCCCTCCCAGCCCAGCCTACTCCTCCCCAAACCCGAACCCCGGAGCTTCCCTGTCATGGACACCCCCATCTCCAGCACCTTT-GGGGACCCCTGCTCGGcctggcctgggctcctgaccctgcaggtccctc-cctggccctgcccaagcccttggcAGCTTCGGGGAGCAAAGGCTTCATGAGGT--------TCCAGGGCAGCTGGGGTGGAGAGGG-GCTCCC-CTCACCCTCAACAAGGGGG i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57445895 284 + 159171411 CCCTCCATCTGTGGCTGAAGCTTGGCTCTGGCCCTGGCCA------GTGTCCCCCTCCCAGCCCAGCCTACTCCTCCTCAGACCTGTACCCTAGAGCTTCCCTGCCATGTACACCCCCATCCCTGGTACCTCTGGGGGGGGCCTGCTTGGCCTGGCCTGTGCTCCCGACCCTGCAGGTCCCAC-CCTAGCCCTGTCCAGGACCTTGGCAGCTTCCAAAAGCAAAGGCTTCATGAGGTAGAAATGCCCCCGGGGAGCTGGGGTGTGGAGGG-GCTCCC-----TCCTCAACAAAGGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15563911 279 + 16356641 CCCTCCCTCTGTGGCTGAAGCTTGGCTCTGGCCCTGGCCA------GTGTCCCCCTTCCGGCCCAGCCTACTCCTCCTCAGACCTGTGACCCGGAG-----CTGCCATGCATGCCCCCGTCCCTGGCACCTCCTGGGGGGACCTGCTCAGCCTGGCCTGCGCTCCCGACACTGCAGGTCCCAC-CCTGGCCCTGCCCAGGCCCTTGGCAGCTTCCAAAAGCAAAGGCCTCAAGAGGTAGAAACGCCCCCGGGGAGCCGGGGTGTGGAGGG-GCTCCC-----TCCTCAACAAGGGGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 412682 290 + 1231380 CCCTCCCTCTGTGGCTGAAGCTtggccctggccctggccctggcctgtgtccccctcccggcccAGCCTACTCCTCCTCAGGACTGTGCCCCGGAGCTTCCCTGCCATGCACACCCTCATCCCTGGCACCTCTGGAGGGGGCCTGCTCAGCCTGGCCTGTGCTCCCAACCCTGCAGGTCCCAC-CCTGGCCCTGCCCAGGCCCTTGGCAGCTTCCAAAAGCAAAGGCCTCATGAGATAGAAATGCCCCTAGAGAGCCGGGGTGTGGAGGG-GCTCCC-----TCCTCAACAAGGGGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1970055 253 + 11732439 CTCTCCCTCTGTGGCTGAAGCTTGGCTCCGGCCCTGGCCC------------------------AGCCTACTCCTCCTCAGACCTGTGCTCCGGAGCTTCCCTGCCACGCACACCCCCATCCCTGGCACCTCT--GAGGGGCCTGCTCGGCCTGGCTTGCACTCTCAACCCTGCAGGTCCCAC-CCCGTC-----------CCTTGGCAGCTTCCAAAAGCAAAGGCCTCATGAGGCAGAAACGCCCCCAGGGAGCTGGGGTGTGGACGG-GCTCCC-----TCCTCAACAAGGGGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22183124 258 + 22939663 CATGTCTTCTATGGGTGAATCTTGGCTCTGTCCTTGGCCA------GTGTC-------------AGT---CCCACCCCCAGACATAGCCCCTGGAACGTCCCTACCATGCACACCCAAAT--------------TGGGGCTCCTGCCTGGCCAGGTCTAAGCACGTGGCCCTGCCGATTCCATGGCCAGCCCTTCCCAGGCCCTTGGCAGTTGTGGAGACCAAAGGCCTCGTGGGGG--GAGCCCCACAGAGCAGTTGGGGTGAAGAGGGTGCTGCCTCCCACCCACTACAAGGGG- i otoGar3.GL873542 I 109 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181123904 1312 + 182113224 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=342126.000000 s hg38.chr20_KI270871v1_alt 47887 138 + 58661 CTCCTCCTGAG---ACATCCCACACTCCCTTCATGGGCTCAAGCTGCCTGTCAGCCCCACCCGAAACCCATTCAGGTGCTGAGGGCA-CCCCAACAGTGGCACTCCTGACCGAG--GCTCCCAGCAGGCCTTCCCCCCCACAGC s panTro5.chr20 65623402 138 + 66533130 CTCCTCCTGAG---ACATCCCACACTCCCTTCATGGGCTCAAGCTGCCTGTCAGCCCCACCCGAAACCCATTCAGGTGCTGAGGGCA-CCCCAACAGTGGGGCTCCTGACCGAG--GCTCCCAGCAGGCCTTCCCCCCCACAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61383559 138 + 62195757 CTCCTCCTGAG---ACATCCCACACTCCCTTCATGGGCTCAAGCTGCCTGTCAGCCCCACCCGAAACCCACTCAGGTGCTGAGGGCA-CCCCAACAGTGGGGCTCCTGACCGAG--GCTCCCAGCAGGCCTTCCCCCCCACAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 797959 138 - 1017659 CTCCTCCTGAG---ACATCCCACATTCCCTTCATGGGCTCAAGCTGCCTGTCAGCCCCACCCGAAACCCATTCAGGTGCTGAGGGCA-CCCCAACAGTGGCGCTCCTGACCGAG--GCTCCCAGCAGGCCTTCCCCCCCACAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109288930 138 - 110113093 CTCCTCCTGAG---ACATCCCACACTCCCTTCGTGGGCTCAAGCTGCCTGTTAGCCCCACCCAAAACCCATTCAGGTGCTGAGGGCA-CCCCAACAGTGGCGCTCCTGACTGAG--GCTCCCAGCAGGCCTTCCCTCCCACAGC i nomLeu3.chr13 C 0 C 0 s calJac3.chr5 57446179 121 + 159171411 CTCCTCCTGAG---AAACCCCATACTCCCTTCATGGGCTCAAGCTGCCCGTCAGCCCCACCCCAAACCCTTTCAGATGCTGAGGGCA-CCTCAACAGAGGCACTCCTGACTGAG--ACCCCCTGGGG----------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15564190 118 + 16356641 CTCCTCCTGAG---CAACCCCATGCTCCCTTCATGGGCTCAAGCTGCCCGTCGGCCCCA-CCCAAAACCTTTCAGATGCTGAGGGCA-TCTCAACAGAGACCCTCCTG-CCGAG--GCCCCC-GGGG----------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 412972 121 + 1231380 CTCCTCCTGAG---AAACCCCATGCTCCCTTCATGGGCTCAAGCTGTCCGTCGGCCCCACCCAAAACTCTTTCAGATGCTGAGGGCA-CCTCAACAGAGACACTCCTGACCGAG--GCCCCCCGGGG----------------- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1970308 121 + 11732439 CTCCTCCTGAG---AAACTCCATGCTCCCTTCATGGGCTCAAGCTGCCCGTCAGCCCCACCCAAAACCCTTTCAGATGCTGAGGGCA-CCTCAACAGAGGCACTCCTGACCGAG--GCCCCCCGGAG----------------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22183382 83 + 22939663 CCCCTCCTGGG---------------------ATGTGCT----------GTCAGCACCT-GGGAAGCTCACACAGTGCCT--GGGCA-CCCCAGCAGCAGG---CCTGCCCCA----CTTCCAGC------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125216 121 + 182113224 CTCCTCCTGAGTATGAATCTCCATTTTCTTTCATG-GCTCAGG---------AGGCCCA------------TCAGGTGCTCAGAGTACCCCCAACAATGGATCTCCTGACAGAGTAGCTCAC-ACAGGCCTCCCCACCCACTAT i mm10.chr2 I 1312 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I e manLeu1.NW_012104365v1 5504914 6468 + 6149316 I e colAng1.NW_012114444v1 4733044 0 - 5823884 C e chlSab2.chr2 89621909 0 - 90373283 C e cerAty1.NW_012001373v1 2954173 0 - 3785965 C e macNem1.NW_012014244v1 16105771 428 - 16982598 I e macFas5.chr10 95655309 0 + 96509753 C e rheMac8.chr10 92005736 317 - 92844088 I a score=2366575.000000 s hg38.chr20_KI270871v1_alt 48025 235 + 58661 CCCCTG------AGACAGCCACGCCTA-ACCCCCT-CCCAAGCAGGCCAGTGC-CCtcagctgg-tccacggctcacagctccagtccctggccccctacaaacgtcctagtgagtgctctctctcggcctccacttgcacacctccggcgacggagggctcaccccacagaaagaatctcgttccaACACAAGCCCCTCCTGGGCCAGCCTGCGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- s panTro5.chr20 65623540 235 + 66533130 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCCAAGCAGGCCAGTGC-CCtcagctgg-tccacggctcacagctccagtccctggccccctacaaacgtcctagtgagtgctctctctcggcctccacttgcacacctccggcgacggagggctcaccccacagaaagaacctcattccaACACAAGCCCCTCCTGGGCCAGCCTGCGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61383697 235 + 62195757 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCCAAGCAGGCCAGTGC-CCtcagctgg-tccacggctcacagctccagtccctggccccctacaaacgtcctagtgagtgctctctctcggcctccacttgcacacctccggcgacggagggctcaccccacagaaagaacctcgttccaACACAAGCCCCTCCTGGGCCAGCCTGCGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798097 234 - 1017659 CCCC-G------AGACAGCCACGCCTA-ACCCCCT-CCCAAGCAGGCCAGTGC-CCtcagctgg-tccacggctcacagctccagtccctggccccctacaaacgtcctagtgagtgctctctctcggcctccacttgcacacctccggcgacggagggctcaccccacagaaagaacctcgttccaACATAAGCCCCTCCTGGGCCAGCCTGCGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289068 235 - 110113093 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCCAAGCAGGCCAGTGC-CCTCAGCTGG-TCCACGGCTCACAGCTCCAGGCCCTGGccccctacaaacgtcctagtgagtgctctctctcggcctccacttgcacacctccggcgatggagggctcaccccacagaaagaacctcgttccaACACAAGCCCCTCCTGGGCCAGCCTGGGTCCTCCCACTCCCCTCACCAGCCTTCCCGG--- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006053 235 - 92844088 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCGAAGCAGGCCAATGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGcctcctacaaacttcctagtgagtgctctctcttgtcctccacttgcacacctctggtgacggagggctcaccccacagaaggaacctcgttctaACACAAGCCCCTCCTGGGCTAGCCTGGGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i rheMac8.chr10 I 317 C 0 s macFas5.chr10 95655309 235 + 96509753 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCGAAGCAGGCCAATGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGcctcctacaaacttcctagtgagtgctctctcttgtcctccacttgcacacctctggtgacggagggctcaccccacagaaggaacctcgttctaACACAAGCCCCTCCTGGGCTAGCCTGGGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106199 235 - 16982598 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCGAAGCAGGCCAATGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGcctcctacaaacttcctagtgagtgctctctcttgtcctccacttgcacacctctggtgacggagggctcaccccacagaaggaacctcgttctaACACAAGCCCCTCCTGGGCTAGCCTGGGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i macNem1.NW_012014244v1 I 428 C 0 s cerAty1.NW_012001373v1 2954173 225 - 3785965 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCGAAGCAGGCCAGTGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGcctcctacaaacttcctagtgagtgct----------ctccacttgcacacctctggtgacggagggctcaccccacagaaggaacctcgttctaACACAAGCCCCTCCTGGACTAGCCTGGGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89621909 235 - 90373283 CCCCCG------AGACAGCCATGCCTA-ACCCCCT-CCGAAGCAGGCCAATGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGcctcctacaaacttcctagtgagtgctctctcttgtcctccacttgcacacctctggtgacggagggctcacCCCACAGAATGAACCTCGTTCTAACACAAGCCCCTCCTGGGCTAGCCTGGGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511382 235 + 6149316 CCCCCG------AGACAGCCACGCCTA-ACCCCCT-CCGAAGCAGGCCAATGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGcctcctacaaacttcctagtgagtgctctctcttgtcctccacttgcacacctctggtgacggagagctcaccccacagaaggaacctcgttctaACACAAGCCCCTCCTGGGCTAGCCTGGGTCCTCCCTCTCTCCTCACCAGCCTTCCTGG--- i manLeu1.NW_012104365v1 I 6468 C 0 s colAng1.NW_012114444v1 4733044 234 - 5823884 CCCCCG------AGACAGCCACGCCTA-ACCCCCA-CCGAAGCAGGCCAGTGC-CCTCAGCTGG-TTCACAGCCTACAGCTCCAGCCCCTGGCC-CctacaaacttcctagtgagtgctctctcttgtcctccacttgcacacctctggtgacggagggctcaccccacagaaggaacctcgttctaACACAAGCCCCTCCTGGGCTAGCCTGGGTCCTCCCTCTCCCCTCACCAGCCTTCCTGG--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446300 226 + 159171411 -------------GACAGCAGGGCCTA-ACCCCCT-TCCAAGCAGGTCAGTGC-CCtcagctgg-tccacggctcacagctccagtccctggcc-cccacaaacatcctagtga-tgtcctctctcggcctccacttgcacacctctggcgacagagggctcaccccacagaaagaacctcgttccaACACGAGACCCTCCTGGGACAGCCTGGGTCTTCCCTCTCCCCTCACCAGCCTTCCTGG--- i calJac3.chr5 C 0 I 16 s saiBol1.JH378156 15564308 226 + 16356641 -------------GACAGCACTGCCTA-ACCCCCT-TCCAAGCAGGCCAGTGC-CCTCAGCTGG-TCCACGGCTCACGGCTCCAGTCCCTGGCC-Cccacaaacgtcctgatga-tgccctctctcggcctccacttgcacacctcttgtgacggagggttcaccccacagaaagaacctcgttccaACATGAGCCCCTCCTGGCCCAGCCTGGGTCCCCCCTCTCCCGTCACCAGCCTTCCTGG--- i saiBol1.JH378156 C 0 I 16 s cebCap1.NW_016107870v1 413093 226 + 1231380 -------------GACAGCAGGGCTTA-ACCCCCT-TCCAAGCAGGCCAGTGC-CCTCAGCTGG-ACCACAGCTCACAGCTCCAGTCCCTGGCC-CCCACAAACGTCCTAGTGA-TGCCCTCTCTcagcctccacttgcacacctctggcgacggagggctcaccccacagaaagaacctcgttccaACACGAGCCCCTCCAGGGCCAGCCTGGGTCTTCCCTCTCCCCTCACCAGCCTTCCTGG--- i cebCap1.NW_016107870v1 C 0 I 41 s aotNan1.NW_018500483v1 1970429 223 + 11732439 -------------GACAGCAGGGCCTA-ACCCCC--TCCAAGCAGGCCAGTGC-CCTCAGCTGG-TCCATGGCTCA--GCTCCAGTCCCTGGCC-CCCACAAACGTCCTAGTGA-TGCCCTCTCTTGgcctccacttgcacacctctggcgacagagggctcaccccacagaaagaacctcgttccaACACGAACCCCTCCTGGGCCAGCCTGGGTCTTCCCTCTCCCCTCACCAGCCTTCCTGG--- i aotNan1.NW_018500483v1 C 0 I 15 s otoGar3.GL873542 22183465 172 + 22939663 --CCTG------ACACTGATGGGAT--------------AACGAGGCTAGTGC-TCGCAGCTGG-TCCCCAGGTatc-----------------------------cctggggaatgctctctc--agcccccacttgcacacctccagtgacagg----ccactcaGCCATGATAGCCTCCTCCCAGCATGAGCCCCTCCTGGGCCACACTG-GCCCTCAGACTCCCCTCA---------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125337 213 + 182113224 CCCACATTTGATGGACAGGCATGCCCATGCCTCCTGCCCAAGCTG-----TGCTCCTGAGCTGGCCCCAAAGCTCACAGCGTTAATTCCTGATCATTTCTAAA------------TACTCTCTCCCAGCC-------GTGTACAGCCAATGATGGAAAGCTCACCCCTCAAACAGGACCTTTTCCTGATATGAGCCTCTCTTGGGCTA-----------CCCTTGCTACTCACCAGCTTTCCTAATGA i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=118708.000000 s hg38.chr20_KI270871v1_alt 48260 14 + 58661 CCAGGGTGGCCTCA s panTro5.chr20 65623775 14 + 66533130 CCAGGGTGGCCTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61383932 14 + 62195757 CCAGGGTGGCCTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798331 14 - 1017659 CCAGGGTGGCCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289303 14 - 110113093 CCAGGGTAGCCTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006288 14 - 92844088 CCAGGGTGGCCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655544 14 + 96509753 CCAGGGTGGCCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106434 14 - 16982598 CCAGGGTGGCCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954398 14 - 3785965 CCAGGGTGGCCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622144 13 - 90373283 CCAGGG-GGCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511617 14 + 6149316 CCAGGGTGGCCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4733278 14 - 5823884 TCAGGGTGGCCTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446542 14 + 159171411 TCAGGGCTGCCTCA i calJac3.chr5 I 16 I 11 s saiBol1.JH378156 15564550 14 + 16356641 TCAGGGCTGCCTCA i saiBol1.JH378156 I 16 I 11 s aotNan1.NW_018500483v1 1970667 14 + 11732439 TCAGGGCTGCCTCA i aotNan1.NW_018500483v1 I 15 I 11 s mm10.chr2 181125550 14 + 182113224 TCTGGATGAACATA i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e cebCap1.NW_016107870v1 413319 41 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I e otoGar3.GL873542 22183637 0 + 22939663 C a score=1160751.000000 s hg38.chr20_KI270871v1_alt 48274 127 + 58661 TCACCTAATCACATTCAGGCAGACCCGGGGCCTGCAGGACAGCCCTGGATGGGACACATGTGGATTCCCCAAGCCTCATGTGGACACGTCCCCAGGACAGCTGTG-GTGTCGACATCCACGCAGGGAC s panTro5.chr20 65623789 127 + 66533130 TCACCTAATCACATTCAGGCAGACCCAGGGCCTGCAGGACGGCCCTGGATGGGACACATGTGGATTCCTCAAGCCTCATGTGGACACGTCCCCAGGACAGCTGTG-GTGTCGACATCCACGCAGGGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61383946 127 + 62195757 TCACCTAATCACATTCAGGCAGACCCAGGGCCTGCAGGACGGCCCTGGATGGGACACATGTGGATTCCTCAAGCCTCATGTGGACACGTCCCCAGGACAGCTGTG-GTGTCGACATCCACGCAGGGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798345 127 - 1017659 TCACCTAATCACATTCAGGCAGACCTGGGGCCTGCAGGACGGCCCTGGATGGGACACATGTGGATTCCCCAAGCCTCATGTGGACACGTCCCCAGGACAGCTGTG-GTGTCCACATCCATGCAGGGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289317 127 - 110113093 TCACCTAATCACATTCAGGCAGACCCAGGGCCTGCAGGACAGCCCTGGATTGGACACATGTGGATTCCCCAAGCCTCATGTGGACACGTCCCCAGGACAGCTGTG-GTGTTGACATCCACGCAGGGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006302 127 - 92844088 TCACCTAATCACATTCAGGCAGACCCGGGGCCTGCAGGACGGCCTTGGATGGGACACATGTGGATTCCCCAAGCCTCAAGTGGACACGTCCCCAGAACAGCTGTG-GTGTCAACATCCATGCAGGGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655558 127 + 96509753 TCACCTAATCACATTCAGGCAGACCCGGGGCCTGCAGGACGGCCTTGGATGGGACACATGTGGATTCCCCAAGCCTCAGGTGGACACGTCCCCAGGACAGCTGTG-GTGTCAACATCCATGCAGGGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106448 127 - 16982598 TCACCTAATCACATTCAGGCAGACCCGGGGCCTGCAGGACGGCCTTGGATGGGACACATGTGGATTCCCCAAGCCTCAAGTGGACACGTCCCCAGGACAGCTGTG-GTGTCAACATCCATGCAGGGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954412 118 - 3785965 TCACCTAATCACATTCAGGCAGACCCGGGG---------CGGCCTTGGATGGGACACATGTGGATTCCCCAAGCCTCAAGTGGACACGTCCCCAGGACAGCTGTG-GTGTCAACATCCATGCAGGGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622157 127 - 90373283 TCACCTAATCACATTCAGGCAGACCCGGGGCCTGCAGGACGGCCTTGGATGGGACACATGTGGATTCCCCAAGCCTCAAGTGGACACGTCCCCAGGACAGCTGTG-GTGTCAACATCCATGCAGGGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511631 127 + 6149316 TCACCTAATCACATTCAGGCAGACCCGGGGCCTGCAGGACGGCCTTGGATGGGACACATGTGGATTCCCCAAGCCTCCAGTGGACACGTCCCCAGGACAGCTGTG-GTGTCAACATCCATGCAGGGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4733292 127 - 5823884 TGACCTAATCACATTCAGGCAGACCCAGGGCCTGCAGGACGGCCTTGGATGGGACACACGTGGATTCCCCAAGCCTCAAGTGGACACGTCCCCAGGACAGCTGTG-GTGTCAACATCCATGCAGGGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446567 123 + 159171411 TCATCTACTCACATTCAGGCAGACCCAGGGCCTGCAGCACGGCC-TGGATGGGACACATTTGGA-TCCCCAAG--TCATGTGGACACGTCCCCAGGACAAACGTG-GCATCGACATCCACGTGGGGAC i calJac3.chr5 I 11 C 0 s saiBol1.JH378156 15564575 123 + 16356641 TTACCTACTCACATTCAGGCAGACCCAGGGCCTGCAGCACGGCC-TGGACGGGACACATTTGGA-TCCCCAAG--TCATGCGGACACGTCCCCAGGACAGACGTG-GCATCGACATCCATGTGGGGAC i saiBol1.JH378156 I 11 C 0 s cebCap1.NW_016107870v1 413360 123 + 1231380 TCACCTACTGACATTCAGGCAGACCCAGGGCCTGCAGCACGGCC-TGGACGGGACACATCTGGA-TCCCAAAG--TCATGCAGACACATCCCCAGGACAGACGTG-GCATCGACATCCACGTGGGGAC i cebCap1.NW_016107870v1 I 41 I 253 s aotNan1.NW_018500483v1 1970692 123 + 11732439 TCACCTACTCACATTCAGGCAGACCCAGGGCCTGCAGCACAGCC-TGGACGGGACACATTTGGA-TCCCCAAG--TCATGCGGACATGTCCCCAGGACAGACGTG-GCATCGACATCCACGTGGGGAC i aotNan1.NW_018500483v1 I 11 C 0 s otoGar3.GL873542 22183637 64 + 22939663 ------------------------------------------------------CACA----------CCAGGCCCCTGTAGAACACACCCCAGGGACAGATGCATGTGTCCACACATGCACAAGGAT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125564 97 + 182113224 ----------ACACG-AGACAAGGCCACAATCAGAAGTACATCCT--------ACAGAAATGGCCCTCCTGAACA------GGACAT-TCCTGTGAACAGAGGTATGTGTGGACATACAGGCA----- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=23695.000000 s hg38.chr20_KI270871v1_alt 48401 3 + 58661 ACC s panTro5.chr20 65623916 3 + 66533130 ACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384073 3 + 62195757 ACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798472 3 - 1017659 ACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289444 3 - 110113093 ACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006429 3 - 92844088 ACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655685 3 + 96509753 ACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106575 3 - 16982598 ACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954530 3 - 3785965 ACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622284 3 - 90373283 ACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511758 3 + 6149316 ACT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4733419 3 - 5823884 ACC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446690 3 + 159171411 GCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15564698 3 + 16356641 GCC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1970815 3 + 11732439 TCC i aotNan1.NW_018500483v1 C 0 I 128 s otoGar3.GL873542 22183701 3 + 22939663 GCT i otoGar3.GL873542 C 0 I 1 e dasNov3.JH567899 124330 1436 + 555560 I e mm10.chr2 181125661 0 + 182113224 C e cebCap1.NW_016107870v1 413483 253 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I a score=886509.000000 s hg38.chr20_KI270871v1_alt 48404 150 + 58661 ACACAACACAGG-GACTCTGCCGTCATCC----------ATGTCCACAGGTGG--CTGGACAGGTGCTGCGGCAGCCCCAGGTCAG--AGACAAGCCAACTACCTGGCACGCGAGACTCATCTTGCCCATGAGAAGTGTGGACAGTATGCCGTTAACACCACAGC s panTro5.chr20 65623919 150 + 66533130 ACACAACACAGG-GACTCTGCCGTCATCC----------ATGTCCACAGGTGG--CTGGACGGGTGCTGCGGCAGCCCCAGGTCAG--AGACAGGCCAACTACCTGGCACGCGAGACTCATCTTGCCCATGAGAAGTGCAGACAGTATGCCGTTAACACCACAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384076 150 + 62195757 ACACAACACAGG-GACTCTGCCGTCATCC----------ATGTCCACAGGTGG--CTGGACGGGTGCTGCGGCAGCCCCAGGTCAG--AGACAGGCCAACTACCTGGCACGCGAGACTCATCTTGCCCATGAGAAGTGCAGACAGTATGCCGTTAACACCACAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798475 146 - 1017659 ACACAACACAGG-GACTCTGCCGTCATCC----------GTGTCCACAGGTGG--CTGGACAGGTGCTGCGGCAGCCCCAGGTCAG--AGACAGGCCAA----CTGGCACGCGAGACTCATCTTGCCCATGAGAAATGCGGACAGTATGCCGTTAACACCACAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289447 150 - 110113093 ACACAACACAGA-GACTCTGCCGTCATCC----------GTGTCCACAGGCAG--CTGGACAGGTGCTGTGGCAGCCCCAGGTCAG--AGACAGGCCGACTACCTGGCATGCGAGACTCATCTTGCCCATGAGAAGTGCGGACCGTATGCCGTTAACACTGCAGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006432 149 - 92844088 GCACAACACGGG-GACTCTGTTGTTACCC----------GTGACCACAGGCAG--CTGGACAGGCACTGCAGTGGCCCCAGGTCAG--AGACAGGCTGACCACCTGGCATGTGAGACTCATCTTGCCC-TGAGAAGTGCAGACAGTATGCCGCTAACACTGCAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655688 149 + 96509753 GCACAACACGGG-GACTCTGTTGTTACCC----------GTGACCACAGGCAG--CTGGACAGGCACTGCAGTGGCCCCAGGTCAG--AGACAGGCTGACCACCTGGCATGTGAGACTCATCTTGCCC-TGAGAAGTGCAGACAGTATGCCGCTAACACTGCAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106578 149 - 16982598 GCACAACACGGG-GACTCTGTTGTTACCC----------GTGACCACAGGCAG--CTGGACAGGCACTGCAGTGGCCCCAGGTCAG--AGACAGGCTGACCACCTGGCATGTGAGACTCATCTTGCCC-TGAGAAGTGCAGACAGTATGCCGCTAACACTGCAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954533 149 - 3785965 GCACAACACGGG-GACTCTGTTGTCACCC----------GTGACCACAGGCGG--CTGGACAGGCACTGCGGTGGCCCCAGGTCAG--AGACAGGCTGACCACCTGGCATGTGAGACTCATCTTGCCC-TGAGAAGTGCACACAGTATGCCGCAAACACTGCAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622287 149 - 90373283 GCACAGCACAGG-GACTCTGTTGTTACCC----------GTGACCACAGGTGG--CTGGACAGGCGCTGCGGTGGCCCCAGGTCAG--AGACAGGCTGACCACCTGGCATGTGAGACTCATCTTGCCC-TGAGAAGTGCAGACAGTATGCCGCTAACACTGCAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511761 149 + 6149316 GCACAACACGGG-GACTCTGTTGTTACCC----------GTGACCACAGGCGG--CTGGACAGGCACTGCGGTGGCCCCAGATCAG--AGACAGGCTGACCACCTGGCATGTGAGACTTAGCTTGCCC-TGAGAAGTGCAGACAGTATGCCGCTAACACTGCAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4733422 150 - 5823884 GCACAACACGGG-GACTCTGTTGTTACGC----------GTGACCACAGGTGG--CTGGACAGGCGCTGCGGTGGCCCCAGGTCAG--AGACAGGCTGACCACCTGGCACGCGAGACTCATCTTGCCCATGAGAAGTGCAGACAGTATGCCGCTAACACTGCAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446693 129 + 159171411 -CACCCCATGGC-GACTCTGTGGCTACCC----------ATGTCC--------------ACAGGCATGGCACAAGCCCCTGATCAG--AG------CGACCACCCAGCTCGAGGGGCTCATCTAGCCCGTGACAAGTCCGGAAAAGACGCCGTCAACACTTAA-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15564701 143 + 16356641 -CACCACACGGC-AACTCTGTGGCTACCC----------GTGTCCACAGGCGG--CCGGACAGGCGTGGCAGCAGCCCCCGATCAGACAG------CGACCACCCAGCTCGAGGGGCTCGTCTCGCCCGTGAGAAGTCCGGACAAGACGCCGTCAACACTGCA-- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22183705 160 + 22939663 GTGCAGCACAGGTAACACTCTGGACATCTTCACACCCAAGTGTCCACAGACAGGACTGGACAGAAG-GACAACAGCTCCAGGACAG--AGAAAGGTCAAGAACTTGCCAAAC-AGGCACATCAGACCTGTGAGGAAATCCCCAGATACACCACTAACCAAGAAG- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181125661 91 + 182113224 -TACAGGATACT-GACTCAGACAATATCC--TAAACTGAGTGTTCCCATGTGA-ACTAGAT-GGAGTTCCAATGGTCC---ATAGG--AGA----------------------AGACACATCGC----------------------------------------- i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e aotNan1.NW_018500483v1 1970818 128 + 11732439 I e cebCap1.NW_016107870v1 413483 253 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I a score=248388.000000 s hg38.chr20_KI270871v1_alt 48554 32 + 58661 GGGAC-GGGACCGCCTGAATCCTATTCTGTT-TA s panTro5.chr20 65624069 32 + 66533130 GGGAC-GGGACCGCCTGAATCCTATTCTGTT-TA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384226 32 + 62195757 GGGAC-AGGACCGCCTGAATCCTATTCTGTT-TA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798621 32 - 1017659 GGGAC-GGGACCGCCTGAATCCTATTCTGTT-TA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289597 33 - 110113093 GGGACGGGGACTGCCTGAATCCTACTCTGTT-TA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006581 32 - 92844088 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655837 32 + 96509753 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106727 32 - 16982598 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-CA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954682 32 - 3785965 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-CA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622436 32 - 90373283 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-CA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511910 32 + 6149316 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-CA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4733572 32 - 5823884 GGGAC-GGGGACGCCTGAATCCTATTCTGTT-TA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446822 32 + 159171411 AGAAT-GGGGCCGCTTGAATCCTGCTCTGTT-CG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15564844 32 + 16356641 AGGAT-GGCTCCGCTTGAATATTGCTCTGTT-CG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1970946 32 + 11732439 AGGAT-GGGGCCGCTTGAATCCTGCTCTGTT-CG i aotNan1.NW_018500483v1 I 128 C 0 s otoGar3.GL873542 22183865 33 + 22939663 GAGTT-ACAGGCACCCAAACCCTGTTTTGTTAAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125752 19 + 182113224 AGAAC-AG-------------CTGATCTGTA-AG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 124330 1436 + 555560 I e cebCap1.NW_016107870v1 413483 253 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I a score=52339.000000 s hg38.chr20_KI270871v1_alt 48586 5 + 58661 GAAAC s panTro5.chr20 65624101 5 + 66533130 GAAAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384258 5 + 62195757 GAAAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798653 5 - 1017659 GAAAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289630 5 - 110113093 GAAAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006613 5 - 92844088 GAAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655869 5 + 96509753 GAAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106759 5 - 16982598 GAAAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954714 5 - 3785965 GAAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622468 5 - 90373283 GAAAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511942 5 + 6149316 GAAAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4733604 5 - 5823884 GAAAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57446854 5 + 159171411 GAACT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15564876 5 + 16356641 GAACT i saiBol1.JH378156 C 0 I 10 s aotNan1.NW_018500483v1 1970978 5 + 11732439 GAACT i aotNan1.NW_018500483v1 C 0 I 10 s otoGar3.GL873542 22183898 5 + 22939663 GAAAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125771 5 + 182113224 AAAAT i mm10.chr2 C 0 C 0 s dasNov3.JH567899 125766 5 + 555560 GAAAC i dasNov3.JH567899 I 1436 C 0 e cebCap1.NW_016107870v1 413483 253 + 1231380 I e canFam3.chr24 47093286 992 + 47698779 I a score=1315369.000000 s hg38.chr20_KI270871v1_alt 48591 140 + 58661 GCACAGGCGGGCGCAGACACCTGGAAAGAAACCAGGAAGAGCAAACGTCCTTCCCTG---TTTTC---CACGCTTTCCCAGTCTCCTGCGGTGGATGTG-CTTAC-TTT------------------------GCAGTCAGAAGAAA-AT-----------------AAGCCA------CGACCAAACGTT------------------------TATTT s panTro5.chr20 65624106 140 + 66533130 GCACAGGCGGGCGCAGACACCTGGAAAGAAACCAGGAAGAGCAAACGTCCTTCCCTG---TTTTC---CACGCTTTCCCAGTCTCCTGCGGTGGATGTG-CTTAC-TTT------------------------GCAGTCAGAAGAAA-AT-----------------AAGCCA------CGACCAAACGTT------------------------TATTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384263 140 + 62195757 GCACAGGCGGGCGCAGACACCTGGAAAGAAACCAGGAAGAGCAAACGTCCTTCCCTG---TTTTC---CACGCTTTCCCAGTCTCCTGCGGTGGATGTG-CTTAC-TTT------------------------GCAGTCAGAAGAAA-AT-----------------AAGCCA------CGACCAAACGTT------------------------TATTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798658 140 - 1017659 GCACAGGCAGGCACAGACACCTGGAAAGAAACCAGGAAGAGCAAACGTCCTTCCCTG---TTTTC---CACGCTTTCCCAGTTTCCTGCAGTGGATGTG-CTTAC-TTT------------------------GCAGTCAGAAGAAA-AT-----------------AAGCCA------CGACCAAACGTT------------------------TATTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289635 138 - 110113093 GCACAGGTGGGCACAGACATCTGGAAAGAAACCAGGAAGAGCAAACGTCCTTCCCTG---TTTTC---CA--CTTTCCCAGTCTCCTGCGGTGGATGTG-CTTAC-TTT------------------------GTAGTCAGAAGAAA-AT-----------------AAGCCA------CGACCAAACGTT------------------------TACTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006618 140 - 92844088 GCACAGGTGGGCACAGACAGCTGGAAAGAAATCAGAAAAAGCAAATGTCCTTCCCTG---TTTTC---CACACTTTCCCAATCTCCTGCGGTGAATGTG-CTTAT-TTT------------------------GTAATCAGAAGAAA-AT-----------------AAGCCA------CGATCAAACGTT------------------------TCTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95655874 140 + 96509753 GCACAGGTGGGCACAGACAGCTGGAAAGAAATCAGAAAAAGCAAATGTCCTTCCCTG---TTTTC---CACACTTTCCCAATCTCCTGCGGTGAATGTG-CTTAT-TTT------------------------GTAATCAAAAAAAA-AT-----------------AAGCCA------CGATCAAACGTT------------------------TCTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16106764 140 - 16982598 GCACAGGTGGGCACAGACAGCTGGAAAGAAATCAGAAAAAGCAAATGTCCTTCCCTG---TTTTC---CACACTTTCCCAATCTCCTGCGGTGAATGTG-CTTAT-TTT------------------------GTAATCAGAAGAAA-AT-----------------AATCCA------CGATCAAACGTT------------------------TCTTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2954719 140 - 3785965 GCACAGGTGGGCACAGACAACCGGAAAGAAATCAGAAAAAGCAAATGTCCTTCCCTG---TTTTC---CACACTTTCCCAGTCTCCTGCGGTGAATGTG-CTTAT-TTT------------------------GTAATCAGAAGAAA-AT-----------------AAGCCA------CGATCAAATGTT------------------------TCTTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622473 139 - 90373283 GCACAGGTGGGCACAGACAACCGGAAAGAAATCAGAAAAAGCAAACGTCCTTCCCTG---TTTTC---CACACTTTCCCAATCTCCTGCGGTGAATGTG-CTTAT-TTT------------------------GTAATCAGAA-AAA-AT-----------------ACGCCA------CGATCAAATGTT------------------------TCTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5511947 134 + 6149316 GCACAGGTGGGCACAGACAACCGGAAAGAAATC------AGCAAATGTCCTTCCCTG---TTTTC---CACACTTTCCCAATCTCCTGCGGTGAATGTG-CTTAT-TTT------------------------GTAATCAGAAGAAA-AT-----------------AAGCCA------CGATCAAATGTT------------------------TCTTT i manLeu1.NW_012104365v1 C 0 T 5619 s colAng1.NW_012114444v1 4733609 140 - 5823884 GCACAGGTGGGCACAGACAACCGGAAAGAAATCAGAAAAAGCAAATGTCCTTCCCTG---TTTTC---CACACTTTCCCAATCTCCTGCAGTGAATGTG-CTTAT-TTT------------------------GTAATCAGAAGAAA-AT-----------------AAGCCA------CGATCAAATGTT------------------------TCTTT i colAng1.NW_012114444v1 C 0 I 283 s calJac3.chr5 57446859 140 + 159171411 GCACAGGCGGGCACGGGTGCCTGGGAAGAAATCAGGAAGGGCAAACGTCCTTTCCTG---CTTTC---CGCA-TGTCCCCGTCTCCTGCAGTGGGTGTG-CTTATCTTT------------------------GTAAACAAAAAAAA-AT-----------------AACCCA------TGACCAAGTGTT------------------------TGTTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15564891 140 + 16356641 GCACAGGCGGGCACAGGCGCCTGGGAAGAAATCAGGAAGGGCAGACGTCCCTCCCTG---CTTCC---CACA-TGTCCCCGTCTGCTGCAGTGGGTGTG-CTTATCTTT------------------------GTAAAGAGAAGAAA-AT-----------------AACCCA------TGACCAAGTGTT------------------------TATTT i saiBol1.JH378156 I 10 C 0 s cebCap1.NW_016107870v1 413736 140 + 1231380 gcacaggtgggcacaggCGCCTGGGAAGAAATCAGGAAGGGCAGACGTCCTTTCCTG---CTTCC---CGCA-TGTCCCCGTCTCCTGCAGTGGGCGTG-CTTATCTTT------------------------GTAAACAGGAGAAA-AT-----------------AACCCA------TGACCAAGTGTT------------------------TATTT i cebCap1.NW_016107870v1 I 253 C 0 s aotNan1.NW_018500483v1 1970993 140 + 11732439 GCACAGGAGGGCACGGGCGCCTGGGAAGAAATCAGGAAGGGCAAACGTCCTTTCCTG---CTTCC---CGCA-TGTCCCCGTCTCCTGCAGTGGGTGTG-CTTATCTTT------------------------GTCAACAGAAGAAA-AT-----------------AACCCA------TGACCAAGCGTT------------------------TACTT i aotNan1.NW_018500483v1 I 10 C 0 s otoGar3.GL873542 22183903 215 + 22939663 ACATAGATGGGCACAGGCATTTTAAAATAAATCAGGAAGAACAAATGTTCTTCGCTGACTTTTTC---AACATTTTCCCAATTTCCTGCAATGAATATGCCTTAT-TTTAATCataaaaaagcaaataaataggtaatcataaaaaa-attaaaagtaatcataaaaaagcaaataaatagaccagatgctgtggctcacacctgcagtcccagctactt i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125776 122 + 182113224 ---------CCCACAGAGCTATGGAAATCAG-CAGGAGGCACAAACACACCTCTTGT---TTTCC---AGCGTTTCCTCAACTTCCTGCA----------CTGGG-CAT------------------------GTAATAAAAAGAAACAC-----------------TACCCA------TAACCAAGTGCT------------------------TCTGT i mm10.chr2 C 0 C 0 s dasNov3.JH567899 125771 127 + 555560 GC-CAGGTGGGCGCAGCTACTTCCGAAGAAACCAGG----GGAAACGTTCGGCCTTG---TGTTTGGGGACGTTTTC------TCCTACAATAGTCAAG-TAT-T-TTC------------------------GTAATCAGGGAAAA-AA---------------------CT------CAATCAAGTGTT------------------------TCTTG i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47093286 992 + 47698779 I a score=96262.000000 s hg38.chr20_KI270871v1_alt 48731 8 + 58661 AAGAAACG s panTro5.chr20 65624246 8 + 66533130 AAGAAACG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384403 8 + 62195757 AAGAAACG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798798 8 - 1017659 AAGAAACG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289773 8 - 110113093 AAGAAACG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92006758 8 - 92844088 AAGAAACG i rheMac8.chr10 C 0 I 312 s macFas5.chr10 95656014 8 + 96509753 AAGAAACG i macFas5.chr10 C 0 I 312 s macNem1.NW_012014244v1 16106904 8 - 16982598 AAGAAACG i macNem1.NW_012014244v1 C 0 I 311 s cerAty1.NW_012001373v1 2954859 8 - 3785965 AAGAAACG i cerAty1.NW_012001373v1 C 0 I 309 s chlSab2.chr2 89622612 8 - 90373283 AAGAAACG i chlSab2.chr2 C 0 I 314 s manLeu1.NW_012104365v1 5506462 8 + 6149316 aagaaaCA i manLeu1.NW_012104365v1 T 5619 C 0 s colAng1.NW_012114444v1 4734032 8 - 5823884 aagaaaCA i colAng1.NW_012114444v1 I 283 C 0 s calJac3.chr5 57446999 8 + 159171411 AAGAAATG i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15565031 8 + 16356641 AAGAAACG i saiBol1.JH378156 C 0 I 1 s cebCap1.NW_016107870v1 413876 8 + 1231380 AAGAAACA i cebCap1.NW_016107870v1 C 0 I 1 s aotNan1.NW_018500483v1 1971133 8 + 11732439 AAGAAACG i aotNan1.NW_018500483v1 C 0 I 1 s otoGar3.GL873542 22184118 8 + 22939663 gggaggcc i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181125898 8 + 182113224 AAGAGACA i mm10.chr2 C 0 C 0 s dasNov3.JH567899 125898 8 + 555560 CCGAAACA i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47093286 992 + 47698779 I a score=347761.000000 s hg38.chr20_KI270871v1_alt 48739 36 + 58661 AGGGCGGCAGGGGCCGCCAGACCCCCTCACCCTGAC s panTro5.chr20 65624254 36 + 66533130 AGGGCGGCAGGGGCCGCCAGACCCCCTCACCCTGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384411 36 + 62195757 AGGGCGGCAGGGGCCGCCAGACCCCCTCACCCTGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798806 36 - 1017659 AGGGCGGCAGGGGCCGCCAGACCCCCTCACCCTGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289781 35 - 110113093 ACGGTGGCAGGGGCCGCCAGA-CCCCTCGCCCTGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007078 36 - 92844088 aGGGCGGCAGGGGCCGCCAGACCCCCTTGCCCTGAC i rheMac8.chr10 I 312 C 0 s macFas5.chr10 95656334 36 + 96509753 aGGGCGGCAGGGGCCGCCAGACCCCCTTGTCCTGAC i macFas5.chr10 I 312 C 0 s macNem1.NW_012014244v1 16107223 36 - 16982598 aGGGCGGCAGGGGCCGCCAGACCCCCTTGCCCTGAC i macNem1.NW_012014244v1 I 311 C 0 s cerAty1.NW_012001373v1 2955176 36 - 3785965 aGGGCGGCAGGGGCCGCCAGACCCCCTTGCCCTGAC i cerAty1.NW_012001373v1 I 309 C 0 s chlSab2.chr2 89622934 36 - 90373283 AGGGCGGCAGGGGCCGCCAGACCCCCTCGCCCTGAC i chlSab2.chr2 I 314 C 0 s manLeu1.NW_012104365v1 5506470 36 + 6149316 AGGGCGGCAGGGGCCGCCAGACCCCCTTGCCCTGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734040 36 - 5823884 AGGGCGGCAGGGGCCGCCAGACCCCCTGGCCCTGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447008 36 + 159171411 AGGGCAGCAGGGGCCTCCAGAACCCCTCGCCCTGAC i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15565040 36 + 16356641 AGGGCAGCAGGGGCCTCCAGACCCCCTCACCCTGAC i saiBol1.JH378156 I 1 C 0 s cebCap1.NW_016107870v1 413885 36 + 1231380 AGGGCAGCAGGGGCCTCCAGACCCCCCCGCCCTGAC i cebCap1.NW_016107870v1 I 1 C 0 s aotNan1.NW_018500483v1 1971142 35 + 11732439 AGGGCAGCA-GGGCCTCCAGACCCCCTCGCCCTGGC i aotNan1.NW_018500483v1 I 1 C 0 s otoGar3.GL873542 22184126 35 + 22939663 aaggcag-aaggatcacttgagcccagcagtctgac i otoGar3.GL873542 C 0 I 113 s mm10.chr2 181125906 25 + 182113224 AAGCAAGCTGGTCACACCAGAGCCT----------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 125906 14 + 555560 -----AAGAGAGGCGCTCA----------------- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47093286 992 + 47698779 I a score=283370.000000 s hg38.chr20_KI270871v1_alt 48775 30 + 58661 AGACGCAGCCCTGTCCACCCGCCGCTCAGG s panTro5.chr20 65624290 30 + 66533130 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384447 30 + 62195757 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798842 30 - 1017659 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289816 30 - 110113093 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007114 30 - 92844088 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656370 30 + 96509753 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107259 30 - 16982598 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955212 30 - 3785965 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89622970 30 - 90373283 AGACGCAGCCCTGTCCACCCACCGCTCAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506506 30 + 6149316 AGACGCAGCCCTGTCCACCCGCCGCTCAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734076 30 - 5823884 AGACGCAGCCCTGTCCACCCACCACTCAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447044 30 + 159171411 AGACACAGTCCTGTCCGCCCACCGCTCGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565076 30 + 16356641 ACACATGGTCCTGTCGGCCCACCGCTCAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 413921 30 + 1231380 AGACGCGGTCCTGTTGGCCCCCGGGTCAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971177 30 + 11732439 AGACGCACTCCTGTCCGCCCACCGCTCAGG i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181125931 12 + 182113224 ----GCAGAGCTGTCT-------------- i mm10.chr2 C 0 C 0 s dasNov3.JH567899 125920 21 + 555560 -----CAGCC---TCGGCTCACAGCCGAG- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47093286 992 + 47698779 I e otoGar3.GL873542 22184161 113 + 22939663 I a score=657347.000000 s hg38.chr20_KI270871v1_alt 48805 72 + 58661 -CCAAGG-CCCC--------------------CCCA-------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAT------------GGCAC-C--CGTGG-GAAG s panTro5.chr20 65624320 72 + 66533130 -CCAAGG-CCCC--------------------CCCA-------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAT------------GGCAC-C--CGTGG-GAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384477 72 + 62195757 -CCAAGG-CCCC--------------------CCCA-------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAT------------GGCAC-C--CGTGG-GAAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798872 73 - 1017659 -CCAAGGCCCCC--------------------CCCC-------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAT------------GGCCC-C--CGTGG-GAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289846 71 - 110113093 -CCAAGG-CCCC--------------------CCC--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCCCTTGGCTAATTAAAT------------GGCAC-C--TGTGA-GAAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007144 71 - 92844088 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CATGG-GAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656400 71 + 96509753 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CATGG-GAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107289 71 - 16982598 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CATGG-GAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955242 71 - 3785965 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CATGG-GAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623000 71 - 90373283 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CATGG-GAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506536 71 + 6149316 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CATGG-GAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734106 71 - 5823884 -CCAAGG-CCCC--------------------CCT--------------------ACT---TTCTTCACGTGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------GGCAC-C--CGTGG-GAAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447074 69 + 159171411 --CAAGG-CCCC--------------------CC---------------------ACT---TCCGTCACACGATCT-CAACTCAGCTCTTGGCTAATTAAAC------------AGCAT-C--CGTGG-GAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565106 69 + 16356641 --CGAGG-CCCC--------------------CC---------------------ACT---TCTGTCACGTGATCT-CAGCTCAGCTCTTGGCTAATTAAAC------------AGCAC-C--CGTGG-GAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 413951 69 + 1231380 --CAAGG-CCCC--------------------CC---------------------ACT---TCTGTCACGTGATCT-CAACTCGGCTCTTGACTAATTAAAC------------AGCCC-C--CGTGG-GACG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971207 69 + 11732439 --CGAGG-CCCC--------------------CT---------------------ACT---TCCATCATGGGATCT-TAACTCAGCTCTTGGCTAATTAAAC------------AGCAC-C--CTTGG-GAGA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184274 113 + 22939663 -CCAGGG-CCCCAGAGAGACGCAGGCTATCTGCCTCAGCTCAGGTCAGATAGAATACTCGGTCCTTCCAGTGATCT-TAATTCAACACTTGGCTCATTAAAC------------CACAC-A--AGCCA-GGA- i otoGar3.GL873542 I 113 C 0 s mm10.chr2 181125943 82 + 182113224 ------G-CCCA--------------------CGC--------------------AAT---TTCCTTCTGCATGCTAGAATTCAGCACTTGGGTAATTTAACAAGGTGTCATGGAGCAC-CATCATGGAGAAG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 125941 70 + 555560 CCCAGCA-CCCC--------------------GTT--------------------TCC---TGCCACAGGAGG----CGCCTCAGCTCTTGGCGAGTGAGGC------------TGTTCGC--GGTGG-GAGG i dasNov3.JH567899 C 0 I 64 e canFam3.chr24 47093286 992 + 47698779 I a score=364551.000000 s hg38.chr20_KI270871v1_alt 48877 38 + 58661 GGATGGTCTC-AGATAAGCTGG-------CTCAGTGCTAATTGTAA s panTro5.chr20 65624392 38 + 66533130 GGATGGTCTC-AGATAAGCTGG-------CTCAGTGCTAATTGTAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384549 38 + 62195757 GGATGGTCTC-AGATAAGCTGG-------CTCAGTGCTAATTGTAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798945 38 - 1017659 GGATGGTCTC-AGATAAGCTGG-------CTCAGTGCTAATTGTAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289917 39 - 110113093 GGATGGTCTCAAGATAAGCCGG-------CTCAGTGCTAATTGTAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007215 38 - 92844088 GGATGGTCTC-GGATAAGCTGG-------CTCAGTGTTAATTGTAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656471 38 + 96509753 GGATGGTCTC-GGATAAGCTGG-------CTCAGTGTTAATTGTAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107360 38 - 16982598 GGATGGTCTC-GGATAAGCTGG-------CTCAGTGTTAATTGTAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955313 38 - 3785965 GGACGGTCTC-GGATAAGCTGG-------CTCAGTGTTAATTGTAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623071 38 - 90373283 GGATGGTCTC-GGATACGCTGG-------CTCAGTGTTAATTGTAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506607 38 + 6149316 GGACGGTCTC-GGATAAGCTGG-------CTCAGTGTTAATTGTAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734177 38 - 5823884 GGATGGTCTC-GGATAAGCTGG-------CTCAGTGTTAACTGTAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447143 38 + 159171411 GGATGGTCTC-AGATAAGCTGG-------CTCAGCTCTAATTGCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565175 38 + 16356641 GGATGGTCTC-GGAGAAGCTGG-------CTCAGCTCTAATTGCAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414020 38 + 1231380 GAATGGTCTC-GGAGAAGCTGG-------CTCAGCTCTAATTGCAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971276 38 + 11732439 GGATGGTCTC-GGATAAGCTGG-------CTCAGCTCTAATTGCAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184387 38 + 22939663 GCATGGTCTT-GGAGAAGTTAC-------TGGAATAGTAGTCATAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181126025 42 + 182113224 Ggtttgtttg----tttgtttgtttgtttTTCCATGCTGACCCAAG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 126011 64 + 555560 I e canFam3.chr24 47093286 992 + 47698779 I a score=1518548.000000 s hg38.chr20_KI270871v1_alt 48915 180 + 58661 AGGAGAGAAGCCGGTCGTGTA-C-------CTTGCCCCAGCAGCCACCCCCCA--CCGATCATTCCT----CGGGCACCTCCCAAAC---ACCAGCCCCTTCCCCATAG--CTGCCCAGAGGTGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCGGATGC-CAAACAAGAA----TCACACAAGGGGAT----CCTCTGGCCCACGAGG s panTro5.chr20 65624430 180 + 66533130 AGGAGAGAAGCCGGTCATGTA-C-------CTTGCCCCAGCAGCCACCCCCCA--CCGATCATTCCT----CGGGCACCTCCCAAAC---ACCAGCCCCTTCCCCATAG--CTGCCCAGAGGTGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCGGATGC-CAAACAAGAA----TCACACAAGGGGAT----CCTCTGGCCCACGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384587 180 + 62195757 AGGAGAGAAGCCGGTCGTGTA-C-------CTTGCCCCAGCAGCCACCCCCCA--CCGATCATTCCT----CGGGCACCTCCCAAAC---ACCAGCCCCTTCCCCATAG--CTGCCCAGAGGTGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCGGATGC-CAAACAAGAA----TCACACAAGGGGAT----CCTCTGGCCCACGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 798983 179 - 1017659 AGGAGAGAAGCCGGTCGTGTA-C-------CTTGCCCCAGCAGCCA-CCCCCA--CCGATCATTCCT----CGGGCACCTCCCAAAC---ACCAGCCCCTTCCCCATAG--CTGCCCAGAGGTGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCGGATGC-CAAACAAGAA----TCACACAAGGGGAT----CCTCTGGCCCACGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109289956 172 - 110113093 AGGAGAGAAGCCGGCCGTGTA-C-------CTTGCCCCAGCAGCCACCCCCCGCCCCGATCATTCCT----CGGGCACCTCCCAAAT---ACCAGCCCCTTCCCCATAG--CTGCCCAGAGGGGAGTCAAGCC-CCTGACTCTATG---GCCTGGGCGGATGC-CAAACAAGAA----TCACACAAAGGGAC----CCTCTG---------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007253 184 - 92844088 AGCGGAGAAGCTGGCCGTGTA-C-------CTTGCCCCAGCAGCTACCC------CCGATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCTCAGAGGCGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCACGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656509 184 + 96509753 AGCGGAGAAGCTGGCCGTGTA-C-------CTTGCCCCAGCAGCTACCC------CCGATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCTCAGAGGCGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCACGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107398 184 - 16982598 AGCGGAGAAGCTGGCCGTGTA-C-------CTTGCCCCAGCAGCCACCC------CCGATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCTCAGAGGCGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCACGAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955351 184 - 3785965 AGCGGAGAAGCTGGCCGTGTA-C-------CTTGCCCCAGCAGCCACCC------CTGATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCTCAGAGGCGAGCCAAGCC-CCTGGCTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCACGAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623109 184 - 90373283 AGCGGAGAAGCTGGCCGTGTA-C-------CTTGCCCCAGCAGCCACCC------CCGATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCTCAGAGGCGAGTCAAGCC-CCTGACTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCATGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506645 184 + 6149316 AGCGGAGAAGCTGGCCGTGTA-C-------CTTGCCCCAGCAGCCACCC------CCGATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCTCAGAGGCGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCACAAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734215 184 - 5823884 AGCGGAGAAGCTGGCCGTGTC-C-------CTTGCCCCAGCAGCCACCC------CCAATCATTCCTTGGGCAGGCACCTCCCAAAC---ACCAGCCCCTTTCCCAAAG--CTGCCCAGAGGCGAGCCAAGCC-CCTGACTCTATG---GCCTGGGCAGATGC-CAACCAAGAATGAGTCACACAAAGGGAC----CCTCTGGCCCACAAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447181 172 + 159171411 AGGAGAGAAGCTGGCCGGGTA-C-------CCCGTCCCAGCAGCCCTTT------GCAATCATTCCTCAGGCAGGCATCTCCCAAAC---ACCAGCCCC-TCCCCAAAA--CCACCCGGAGGTGAGCCAAGTC-CCCGACTCTGTG---GCCTGGGCGGATGC-----CAGGAA----TCACCAAGAGA-------CCTCTGGCCCACGAGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565213 172 + 16356641 AGGAGAGAAGCCGGCCGGGGA-C-------CCCGTCCCAGCAGCGCCTT------GCAGTCATTCCTCAGGCAGGCATCTCCCAAAC---ACCAGCCCT-TCCCCGAAG--CCACCCGGAGGTGAGCCAAGCC-CCCAACTCTGTG---GCCGGGGCAGATGC-----CAGGAA----TCACCAAGAGA-------GCTCTGGCCCACGAGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414058 172 + 1231380 AGGAGAGAAACCGGCCAGGTA-C-------CCTGTCCCAGCAGCCCCTT------GCAATCATTCCTCAGGCAGGCATCTCCCAAAC---ACCAGCCCC-TCCCCGAAG--CCACCCGGAGGTGAGCCAAGCC-CCTGACTCTGTG---GCCTGGGCCGATGC-----CAGGAA----TCACCAAGAGA-------CCTCTGGCCCACAAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971314 172 + 11732439 AGGAGAGAAGCCGGCCGGGTA-C-------CCTGTCCCAGCAGCCCCTT------GCAATCATTCCTCAGGCAGGCATCTCCCAAAC---ACCAGCCCC-TCCCTGAAG--CCACCCAGAGGTGAGCCAAGCC-CCCGACTCTGTG---GCCTGGGCGGATGC-----CAGGAA----TCACCAAGAGA-------CCTCTGGCCCACGAGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184425 174 + 22939663 GGGAGAGACGCT-CCTGTGTGTC-------TTTGTCCCTACAGC---TC------CCAGCCCTGCACTGGGTGGGCACCCCTAGATCTAGGCCTTcccc-cgcccacac--ccaccc---------cctcatc-ccctaccccattcccacccAGGCTGCTGCACCCCTGGGAA----TTGCCCAGTCCTGT----CCTTCAGCCCACAGGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181126067 166 + 182113224 AAGAAGGAAACCTACC-TGTG-T-------CTTTGTCCTACAATCCCTA------G-----AACCCTCTAGAAATAACTCCCCAAGC---GCTTGCCCCTT--CCAAGG--CTAA-CAAAGGTAACCCAAGCC-TCATCTTGTGAG---A---AGGCAGGGGC------AACAA----TCACACCGTGCAGCTTTTCCGCTG-CTCACAAGG i mm10.chr2 C 0 C 0 s dasNov3.JH567899 126075 167 + 555560 AGACGAGAGGCCAGGCAGGGA-CGGCGAAACCCGCGTCTGCG-------------CCAA------------CGGGCACGTCTC-------CCCGGCGCCTCCCCCCGGGCACCAGCCGAGGTCGAGCCGAGCCTCCCCTCCACGTG---GGTCACCCTGGTGCCCACCCCAGGA----CCACCCAGGGGGCC----CTTCTG-CCGGCGAGG i dasNov3.JH567899 I 64 C 0 e canFam3.chr24 47093286 992 + 47698779 I a score=509453.000000 s hg38.chr20_KI270871v1_alt 49095 41 + 58661 ---------------AGCCGCAACTGCA-GCTCCTGGTCAGGACCATGGCCAGCACC- s panTro5.chr20 65624610 41 + 66533130 ---------------AGCCGCAACTGCA-GCTCCTGGTCAGGACCATGGCCAGCACC- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384767 41 + 62195757 ---------------AGCCGCAACTGCA-GCTCCTGGTCAGGACCATGGCCAGCACC- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799162 41 - 1017659 ---------------AGCCGCAACTGCA-GCTCCTGGTCAGGACCATGGCCAGCACC- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290128 40 - 110113093 ----------------GCCACAACTGCA-GCTTCTGGTCAGGACCATGGCCAGCACC- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007437 41 - 92844088 ---------------AGACACAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656693 41 + 96509753 ---------------AGACACAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107582 41 - 16982598 ---------------AGACACAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955535 41 - 3785965 ---------------AGACACAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623293 41 - 90373283 ---------------AGACACAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506829 41 + 6149316 ---------------AAACACAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734399 41 - 5823884 ---------------AGACATAACTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447353 41 + 159171411 ---------------AGCCACAGCTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i calJac3.chr5 C 0 I 3 s saiBol1.JH378156 15565385 41 + 16356641 ---------------AGCCACAGCTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i saiBol1.JH378156 C 0 I 2 s cebCap1.NW_016107870v1 414230 41 + 1231380 ---------------AGCCACAGCTGCA-GCTCCTGGTCAGGACCACGGTCAGCACC- i cebCap1.NW_016107870v1 C 0 I 2 s aotNan1.NW_018500483v1 1971486 41 + 11732439 ---------------AGACACAGCTGCA-GCTCCTGGTCAGGACCACGGCCAGCACC- i aotNan1.NW_018500483v1 C 0 I 41 s otoGar3.GL873542 22184599 41 + 22939663 ---------------AGGCCCCACTATG-GGTCCAGCTCAGAACCTTGGTCAGAACC- i otoGar3.GL873542 C 0 I 47 s mm10.chr2 181126233 42 + 182113224 ---------------AAATACCGCTGTGCACTTGAGTCCAGGACCATGGTCAGCACC- i mm10.chr2 C 0 I 1 s canFam3.chr24 47094278 41 + 47698779 ---------------AGCCGCCGCTGGG-CCTGCTGCTCAGGACCACGGCCAGCGCC- i canFam3.chr24 I 992 C 0 s dasNov3.JH567899 126242 56 + 555560 AGGCGCTTGTGAGATGGATGCAGCCGGG-GCTCGCGCTCAGG-CCCTGCCCCGGGCCC i dasNov3.JH567899 C 0 C 0 a score=845.000000 s hg38.chr20_KI270871v1_alt 49136 1 + 58661 C s panTro5.chr20 65624651 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384808 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799203 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s canFam3.chr24 47094319 1 + 47698779 T i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 126298 1 + 555560 C i dasNov3.JH567899 C 0 C 0 e nomLeu3.chr13 109290168 0 - 110113093 C e mm10.chr2 181126275 1 + 182113224 I e aotNan1.NW_018500483v1 1971527 41 + 11732439 I e cebCap1.NW_016107870v1 414271 2 + 1231380 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506870 0 + 6149316 C e saiBol1.JH378156 15565426 2 + 16356641 I e calJac3.chr5 57447394 3 + 159171411 I e colAng1.NW_012114444v1 4734440 0 - 5823884 C e chlSab2.chr2 89623334 0 - 90373283 C e cerAty1.NW_012001373v1 2955576 0 - 3785965 C e macNem1.NW_012014244v1 16107623 0 - 16982598 C e macFas5.chr10 95656734 0 + 96509753 C e rheMac8.chr10 92007478 0 - 92844088 C a score=89858.000000 s hg38.chr20_KI270871v1_alt 49137 17 + 58661 -CGGGGGCCGGCCCTCCT s panTro5.chr20 65624652 17 + 66533130 -CGGGGGCCGGCCCTCCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384809 17 + 62195757 -CGGGGGCCGGCCCTCCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799204 17 - 1017659 -CGGGGGCTGGCCCTCCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290168 15 - 110113093 ---GGGGCCGGCCCTCCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007478 16 - 92844088 -CGGGGGCCGG-CCTCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656734 16 + 96509753 -CGGGGGCCGG-CCGCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107623 16 - 16982598 -CGGGGGCCGG-CCTCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955576 16 - 3785965 -CAGGGGCCGG-CCTCCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623334 16 - 90373283 -CGGGGGCCGG-CCTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506870 16 + 6149316 -CAGGGGCCGG-CCTCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734440 16 - 5823884 -CGGCAGCCGG-CCTCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447397 16 + 159171411 -GGGAGGCTCT-CTTCTT i calJac3.chr5 I 3 I 24 s saiBol1.JH378156 15565428 16 + 16356641 -GGGAGGCCCT-TCTCTT i saiBol1.JH378156 I 2 I 24 s cebCap1.NW_016107870v1 414273 16 + 1231380 -GGGAGGccct-cctctt i cebCap1.NW_016107870v1 I 2 I 24 s mm10.chr2 181126276 17 + 182113224 -CAGAGGCACCCCCACCT i mm10.chr2 I 1 I 1 s canFam3.chr24 47094320 16 + 47698779 -CGCCCGCCCG-CCCCGC i canFam3.chr24 C 0 I 1 s dasNov3.JH567899 126299 18 + 555560 CAGGGGGCAGCTGCTCCT i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1971527 41 + 11732439 I e otoGar3.GL873542 22184640 47 + 22939663 I a score=21214.000000 s hg38.chr20_KI270871v1_alt 49154 3 + 58661 -CCC s panTro5.chr20 65624669 3 + 66533130 -CCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384826 3 + 62195757 -CCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799221 3 - 1017659 -CTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290183 3 - 110113093 -CCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007494 3 - 92844088 -CCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656750 3 + 96509753 -CCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107639 3 - 16982598 -CCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955592 3 - 3785965 -CCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623350 3 - 90373283 -CCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506886 3 + 6149316 -CCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734456 3 - 5823884 -CCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447437 3 + 159171411 -CCC i calJac3.chr5 I 24 C 0 s saiBol1.JH378156 15565468 3 + 16356641 -CCC i saiBol1.JH378156 I 24 C 0 s cebCap1.NW_016107870v1 414313 3 + 1231380 -ccc i cebCap1.NW_016107870v1 I 24 C 0 s aotNan1.NW_018500483v1 1971568 3 + 11732439 -CCC i aotNan1.NW_018500483v1 I 41 C 0 s mm10.chr2 181126294 3 + 182113224 -CTC i mm10.chr2 I 1 C 0 s canFam3.chr24 47094337 3 + 47698779 -ccc i canFam3.chr24 I 1 I 119 s dasNov3.JH567899 126317 3 + 555560 TCC- i dasNov3.JH567899 C 0 C 0 e otoGar3.GL873542 22184640 47 + 22939663 I a score=82097.000000 s hg38.chr20_KI270871v1_alt 49157 8 + 58661 CCATCCCC s panTro5.chr20 65624672 8 + 66533130 CCATCCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384829 8 + 62195757 CCATCCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799224 8 - 1017659 CCATCCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290186 8 - 110113093 CCATCCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007497 8 - 92844088 CCATCCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656753 8 + 96509753 CCATCCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107642 8 - 16982598 CCATCCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955595 8 - 3785965 CCATCCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623353 8 - 90373283 CCATCCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506889 8 + 6149316 CCATCCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734459 8 - 5823884 CCATCCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447440 8 + 159171411 CCATCCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565471 8 + 16356641 CCATTCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414316 8 + 1231380 CCATTCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971571 8 + 11732439 CCATCCCC i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181126297 7 + 182113224 TTGTCCC- i mm10.chr2 C 0 I 39 s dasNov3.JH567899 126320 7 + 555560 CCGGCTC- i dasNov3.JH567899 C 0 C 0 e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I a score=373649.000000 s hg38.chr20_KI270871v1_alt 49165 37 + 58661 AAGAGTGGCCCCAGAGCCTAATCAGGTAGGAGGGCAG s panTro5.chr20 65624680 37 + 66533130 AAGAGTGGCCCCAGCGCCTAATCAGGTAGGAGGGCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384837 37 + 62195757 AAGAGTGGCCCCAGCGCCTAATCAGGTAGGAGGGCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799232 37 - 1017659 AAGAGTGGCCCCAGCGCCTAACCAGGTAGGAGGGCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290194 37 - 110113093 AAGAGCGGCCCCAGCGCCTAACCAGGTAGGACGGCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007505 37 - 92844088 AAGAGTGGCCCCAGCGCCTAGCCAGGTAGGAGGGCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656761 37 + 96509753 AAGAGTGGCCCCAGCGCCTAGCCAGGTAGGAGGGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107650 37 - 16982598 AAGAGTGGCCCCAGCGCCTAGCCAGGTAGGAGGGCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955603 37 - 3785965 AAGAGTGGCCCCAGCGCCTAGCCAGGTAGGAGGACAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623361 37 - 90373283 ACGAGTGGCCCCAGCGACTAGCCAGGTAGGAGGGCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506897 37 + 6149316 AAGAGTGGCCCCAGCGCCTAGCCAGGTAGGAGGACAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734467 37 - 5823884 AAGAGTGGCCCCAGCGCCTGGACAGGTAGGAGGGCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447448 37 + 159171411 AAGAGTGGCCCCAGTGCCCAGCCAGGTAGGAGGCCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565479 37 + 16356641 AAGAGTGGTCCCAGTGCCCAGCCAGGTAGGAGGCCAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414324 37 + 1231380 AAGAGTGGCCCCAGTGCCCAGCCAGGTAGGAGGCCAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971579 37 + 11732439 AAGGATGGCCCCAGTGCCCAGCCAGGTAGGAGGCCAG i aotNan1.NW_018500483v1 C 0 C 0 s dasNov3.JH567899 126327 30 + 555560 -----TGCCACTGGAGC--AGCAAGAGGCGAGGGCAG i dasNov3.JH567899 C 0 I 68 e mm10.chr2 181126304 39 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I a score=44607.000000 s hg38.chr20_KI270871v1_alt 49202 5 + 58661 AAATA s panTro5.chr20 65624717 5 + 66533130 AAATA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384874 5 + 62195757 AAATA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799269 5 - 1017659 AAATA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290231 5 - 110113093 AGATA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007542 5 - 92844088 AGGTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656798 5 + 96509753 AGGTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107687 5 - 16982598 AGGTA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955640 5 - 3785965 AGATA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623398 5 - 90373283 AGATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506934 5 + 6149316 AGATA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734504 5 - 5823884 AGATA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447485 5 + 159171411 AGATA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565516 5 + 16356641 AGATA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414361 5 + 1231380 AGATA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971616 5 + 11732439 AGATA i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I a score=-4934.000000 s hg38.chr20_KI270871v1_alt 49207 1 + 58661 -T s panTro5.chr20 65624722 1 + 66533130 -T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384879 1 + 62195757 -T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799274 1 - 1017659 -T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290236 1 - 110113093 -T i nomLeu3.chr13 C 0 I 19 s rheMac8.chr10 92007547 1 - 92844088 -T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656803 1 + 96509753 -T i macFas5.chr10 C 0 T 15 s macNem1.NW_012014244v1 16107692 1 - 16982598 -T i macNem1.NW_012014244v1 C 0 I 6 s cerAty1.NW_012001373v1 2955645 1 - 3785965 -T i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89623403 1 - 90373283 -T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506939 1 + 6149316 -T i manLeu1.NW_012104365v1 C 0 I 19 s colAng1.NW_012114444v1 4734509 1 - 5823884 -T i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447490 1 + 159171411 G- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565521 1 + 16356641 G- i saiBol1.JH378156 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I a score=10476.000000 s hg38.chr20_KI270871v1_alt 49208 3 + 58661 CAC s panTro5.chr20 65624723 3 + 66533130 CAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384880 3 + 62195757 CAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799275 3 - 1017659 CAC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92007548 3 - 92844088 CAC i rheMac8.chr10 C 0 C 0 s chlSab2.chr2 89623404 3 - 90373283 CAC i chlSab2.chr2 C 0 I 16 s colAng1.NW_012114444v1 4734510 3 - 5823884 CAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447491 3 + 159171411 CAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565522 3 + 16356641 CAC i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109290237 19 - 110113093 I e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506940 19 + 6149316 I e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e macFas5.chr10 95656804 15 + 96509753 T a score=7896.000000 s hg38.chr20_KI270871v1_alt 49211 3 + 58661 CTA s panTro5.chr20 65624726 3 + 66533130 CTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384883 3 + 62195757 CTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799278 3 - 1017659 CTA i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92007551 3 - 92844088 CTA i rheMac8.chr10 C 0 I 1 s colAng1.NW_012114444v1 4734513 3 - 5823884 CTA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447494 3 + 159171411 CTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565525 3 + 16356641 CTA i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109290237 19 - 110113093 I e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506940 19 + 6149316 I e chlSab2.chr2 89623407 16 - 90373283 I e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e macFas5.chr10 95656804 15 + 96509753 T a score=11865.000000 s hg38.chr20_KI270871v1_alt 49214 8 + 58661 CCCCAGGC s panTro5.chr20 65624729 8 + 66533130 CCCCAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384886 8 + 62195757 CCCCAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799281 8 - 1017659 CCCCAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s calJac3.chr5 57447497 8 + 159171411 CCCCAGGC i calJac3.chr5 C 0 T 36 s saiBol1.JH378156 15565528 8 + 16356641 CCCCAGGC i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109290237 19 - 110113093 I e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506940 19 + 6149316 I e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623407 16 - 90373283 I e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e macFas5.chr10 95656804 15 + 96509753 T e rheMac8.chr10 92007554 1 - 92844088 I a score=1910.000000 s hg38.chr20_KI270871v1_alt 49222 2 + 58661 AG s panTro5.chr20 65624737 2 + 66533130 AG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384894 2 + 62195757 AG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799289 2 - 1017659 AG i gorGor5.CYUI01015750v1 C 0 C 0 s saiBol1.JH378156 15565536 2 + 16356641 AG i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109290237 19 - 110113093 I e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506940 19 + 6149316 I e calJac3.chr5 57447505 36 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623407 16 - 90373283 I e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e macFas5.chr10 95656804 15 + 96509753 T e rheMac8.chr10 92007554 1 - 92844088 I a score=3492.000000 s hg38.chr20_KI270871v1_alt 49224 6 + 58661 CAGGGA s panTro5.chr20 65624739 6 + 66533130 CAGGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384896 6 + 62195757 CAGGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799291 6 - 1017659 CAGGGA i gorGor5.CYUI01015750v1 C 0 C 0 e nomLeu3.chr13 109290237 19 - 110113093 I e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506940 19 + 6149316 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447505 36 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623407 16 - 90373283 I e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e macFas5.chr10 95656804 15 + 96509753 T e rheMac8.chr10 92007554 1 - 92844088 I a score=47211.000000 s hg38.chr20_KI270871v1_alt 49230 26 + 58661 GGAGGAGGCTGCACCTACCCCGGGCA s panTro5.chr20 65624745 26 + 66533130 GGAGGAGGCTGCACCTACCCCGGGCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384902 26 + 62195757 GGAGGAGGCTGCACCTACCCCGGGCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799297 26 - 1017659 GGAGGAGGCTGCACCTACCCCGGGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290256 26 - 110113093 GGAGGAGGCTGCACCTACCCCAGGCA i nomLeu3.chr13 I 19 C 0 s chlSab2.chr2 89623423 26 - 90373283 GGAGGAGGCAGCACCTACCCCAGGGA i chlSab2.chr2 I 16 C 0 s manLeu1.NW_012104365v1 5506959 26 + 6149316 GGAGGAGGCGGCACCTACCCCAGGGA i manLeu1.NW_012104365v1 I 19 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447505 36 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e macFas5.chr10 95656804 15 + 96509753 T e rheMac8.chr10 92007554 1 - 92844088 I a score=24175.000000 s hg38.chr20_KI270871v1_alt 49256 19 + 58661 GCAGGGAGGAGGAGGCTGT s panTro5.chr20 65624771 19 + 66533130 GCAGGGAGGAGGAGGCTGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384928 19 + 62195757 GCAGGGAGGAGGAGGCTGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799323 19 - 1017659 GCAGGGAGGAGGAGGCTGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290282 16 - 110113093 GCAGGGAGGAGGCTGC--- i nomLeu3.chr13 C 0 T 60 s macFas5.chr10 95656789 16 + 96509753 GGAGGGCAGAGGTATC--- i macFas5.chr10 T 15 C 0 s chlSab2.chr2 89623449 16 - 90373283 GCAGGGAGGGGGTGGC--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506985 16 + 6149316 GCAGGGAGGGGGTAGC--- i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447505 36 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955646 1 - 3785965 I e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=20729.000000 s hg38.chr20_KI270871v1_alt 49275 7 + 58661 ACCTACC s panTro5.chr20 65624790 7 + 66533130 ACCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384947 7 + 62195757 ACCTACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799342 7 - 1017659 ACCTACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290238 7 - 110113093 ACCTACC i nomLeu3.chr13 T 60 C 0 s macFas5.chr10 95656805 7 + 96509753 ACCTAGC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955647 7 - 3785965 ACCTACC i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89623465 7 - 90373283 GCCTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507001 7 + 6149316 GCCTACC i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447505 36 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=61311.000000 s hg38.chr20_KI270871v1_alt 49282 22 + 58661 CCGGGCAGCAGGCAGGAGGCTG s panTro5.chr20 65624797 22 + 66533130 CCGGGCAGCAGGCAGGAGGCTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384954 22 + 62195757 CCGGGCAGCAGGCAGGAGGCTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799349 22 - 1017659 CCGGGCAGCAGGGAGGAGGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290245 22 - 110113093 CCAGGCAGCAGGGAGGAGGCTG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656812 22 + 96509753 CGGGGAAGCAGGGAGGAGGCGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955654 22 - 3785965 CCGGGAAGCAGGGAGGAGGCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623472 22 - 90373283 CCAGGCAGTAGGGAAGAGCTGG i chlSab2.chr2 C 0 T 90 s manLeu1.NW_012104365v1 5507008 22 + 6149316 CCAGGCAGTAGGGAAGAGCCGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447469 22 + 159171411 CCAGGTAGGAGGCCAGAGATAG i calJac3.chr5 T 36 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=45054.000000 s hg38.chr20_KI270871v1_alt 49304 14 + 58661 CACCTACCCCAGGG s panTro5.chr20 65624819 14 + 66533130 CACCTACCCCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384976 14 + 62195757 CACCTACCCCAGGG i panPan2.chr20 C 0 T 30 s gorGor5.CYUI01015750v1 799371 14 - 1017659 CACCTACCCCAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290267 14 - 110113093 CACCTACCCCAGGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656834 14 + 96509753 CACCTACCCCAGGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955676 14 - 3785965 CACCTACCCCAGGG i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5507030 14 + 6149316 CACCTACCCCAGGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447491 14 + 159171411 CACCTACCCCAGGC i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623494 90 - 90373283 T e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=84864.000000 s hg38.chr20_KI270871v1_alt 49318 30 + 58661 AGCAGGGAGGAGGCTGCACCTACCCCAGGG s panTro5.chr20 65624833 30 + 66533130 AGCAGGGAGGAGGCTGCACCTACCCCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384960 30 + 62195757 AGCAGGCAGGAGGCTGCACCTACCCCAGGG i panPan2.chr20 T 30 C 0 s gorGor5.CYUI01015750v1 799385 30 - 1017659 AGCAGAGAGGAGGCTGCACCTACCCCAGGG i gorGor5.CYUI01015750v1 C 0 I 60 s nomLeu3.chr13 109290281 30 - 110113093 AGCAGGGAGGAGGCTGCACCTACCCCAGGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656848 30 + 96509753 AGCAGGGAGGGGGTGGCGCCTACCCCAGGC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955690 30 - 3785965 AGCAGGGAGGGGGTGGCGCCTACCCCAGGT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623404 14 - 90373283 ----------------CACCTACCCCGGGA i chlSab2.chr2 T 90 C 0 s manLeu1.NW_012104365v1 5507044 30 + 6149316 AACACAGAGGAGGGGGCACCTACCCcaggt i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447505 30 + 159171411 AGCAGGGAGGCGGCCACATCTACCCCAGGG i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=24455.000000 s hg38.chr20_KI270871v1_alt 49348 7 + 58661 AGCAGGG s panTro5.chr20 65624863 7 + 66533130 AGCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384990 7 + 62195757 AGCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799475 7 - 1017659 AGCAGGG i gorGor5.CYUI01015750v1 I 60 C 0 s nomLeu3.chr13 109290311 7 - 110113093 AGCAGGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656878 7 + 96509753 AGTAGGG i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955720 7 - 3785965 AGTAGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623418 7 - 90373283 AGCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507074 7 + 6149316 aacaggg i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447535 7 + 159171411 AACAGGG i calJac3.chr5 C 0 T 52 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=57215.000000 s hg38.chr20_KI270871v1_alt 49355 20 + 58661 AAGAGGCTGCACCCACCCCA s panTro5.chr20 65624870 20 + 66533130 AAGAGGCTGCACCTACCCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384997 20 + 62195757 AGGAGGCTGCATCTACCCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799482 20 - 1017659 AGGAGGCTGCACCTACCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290318 20 - 110113093 AGGAGGCTGCACCTACCCCA i nomLeu3.chr13 C 0 T 30 s macFas5.chr10 95656885 20 + 96509753 AAGAGCCGGCACCTACCCCA i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955727 20 - 3785965 AAGAGCCGGCACCTACCCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623425 20 - 90373283 AGGAGGCAGCACCTACCCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507081 20 + 6149316 aggaggcagcacctacccca i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=63280.000000 s hg38.chr20_KI270871v1_alt 49375 26 + 58661 GGGAGCAGGGAAGAGGCTGCACCTAC s panTro5.chr20 65624890 26 + 66533130 GGGAGCAGGGAAGAGGCTGCACCTAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385017 26 + 62195757 GGCAGCAGGGAGGAGGCAGCACCTAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799502 26 - 1017659 TGGAGCAGGGAAGAGGCTGCATCTAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290308 26 - 110113093 GGGAGCAGGCAGGAGGCTGCACCTAC i nomLeu3.chr13 T 30 C 0 s macFas5.chr10 95656905 26 + 96509753 GGGAACACAGAGGAGGGGGCACCTAC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955747 26 - 3785965 GGGAACACAGAGGAGGGGGCACCTAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623445 26 - 90373283 GGGAGCAGGGAGGGGGTGGCGCCTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507101 26 + 6149316 ggtagcagggaggaggcagcacctac i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107693 6 - 16982598 I e rheMac8.chr10 92007554 1 - 92844088 I a score=4500.000000 s hg38.chr20_KI270871v1_alt 49401 1 + 58661 C s panTro5.chr20 65624916 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385043 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799528 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290334 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656931 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107699 1 - 16982598 C i macNem1.NW_012014244v1 I 6 C 0 s cerAty1.NW_012001373v1 2955773 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623471 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507127 1 + 6149316 c i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e rheMac8.chr10 92007554 1 - 92844088 I a score=11000.000000 s hg38.chr20_KI270871v1_alt 49402 2 + 58661 CC s panTro5.chr20 65624917 2 + 66533130 CC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385044 2 + 62195757 CC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799529 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290335 2 - 110113093 CC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007555 2 - 92844088 CC i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95656932 2 + 96509753 Cc i macFas5.chr10 C 0 T 121 s macNem1.NW_012014244v1 16107700 2 - 16982598 CC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955774 2 - 3785965 Cc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623472 2 - 90373283 CC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507128 2 + 6149316 cc i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=96042.000000 s hg38.chr20_KI270871v1_alt 49404 31 + 58661 GGGGCAGCAGGGAGGAGGCAGCACCTACCCC s panTro5.chr20 65624919 31 + 66533130 GGGGCAGCAGGAAGGAGGCTGCATCTACCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385046 30 + 62195757 -TGGCAGCAGGGAGGAGGCTGCACCTACCCC i panPan2.chr20 C 0 T 133 s gorGor5.CYUI01015750v1 799531 31 - 1017659 AGGGCAGCAGGGAGGAGGCTGCATCTACCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290337 30 - 110113093 -AGGCAGCAGGGAGGGGATGGCACCTACCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007557 31 - 92844088 GGGGAAGCAGGGAGGAGGCGGCACCTACCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656813 31 + 96509753 GGGGAAGCAGGGAGGAGGCGGCACCTACCCC i macFas5.chr10 T 121 C 0 s macNem1.NW_012014244v1 16107702 31 - 16982598 GGGGAAGCAGGGAGGAGGCGGCACCTACCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955776 30 - 3785965 -aggtagcagggaggaggcagcacctacccc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623474 3 - 90373283 -AGG--------------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507130 30 + 6149316 -agtcagtagggaggaggcagcaCCTACCCC i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=1694.000000 s hg38.chr20_KI270871v1_alt 49435 1 + 58661 G s panTro5.chr20 65624950 1 + 66533130 A i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799562 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290367 1 - 110113093 A i nomLeu3.chr13 C 0 T 153 s rheMac8.chr10 92007588 1 - 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656844 1 + 96509753 A i macFas5.chr10 C 0 T 61 s macNem1.NW_012014244v1 16107733 1 - 16982598 A i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5507160 1 + 6149316 A i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623477 0 - 90373283 C e cerAty1.NW_012001373v1 2955806 0 - 3785965 C e panPan2.chr20 61385076 133 + 62195757 T a score=5683.000000 s hg38.chr20_KI270871v1_alt 49436 3 + 58661 GGG s panTro5.chr20 65624951 3 + 66533130 GGG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799563 3 - 1017659 GGG i gorGor5.CYUI01015750v1 C 0 T 182 s rheMac8.chr10 92007589 2 - 92844088 -GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656784 3 + 96509753 AGG i macFas5.chr10 T 61 C 0 s macNem1.NW_012014244v1 16107734 2 - 16982598 -GG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955806 3 - 3785965 agg i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5507161 3 + 6149316 GGG i manLeu1.NW_012104365v1 C 0 T 224 e nomLeu3.chr13 109290368 153 - 110113093 T e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623477 0 - 90373283 C e panPan2.chr20 61385076 133 + 62195757 T a score=24695.000000 s hg38.chr20_KI270871v1_alt 49439 14 + 58661 CAGCAGGGAGGAGG s panTro5.chr20 65624954 13 + 66533130 -AGCAGGGAGGAGG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799384 14 - 1017659 CAGCAGAGAGGAGG i gorGor5.CYUI01015750v1 T 182 C 0 s rheMac8.chr10 92007591 14 - 92844088 GAGCAGGGAGGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656787 14 + 96509753 TAGGAGGGCAGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107736 14 - 16982598 GAGCAGGGAGGGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955809 14 - 3785965 cagtagggaggagg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623477 14 - 90373283 CAGTAGGGAAGAGC i chlSab2.chr2 C 0 C 0 e nomLeu3.chr13 109290368 153 - 110113093 T e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507164 224 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e panPan2.chr20 61385076 133 + 62195757 T a score=2300.000000 s hg38.chr20_KI270871v1_alt 49453 2 + 58661 CT s panTro5.chr20 65624967 2 + 66533130 CT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384943 2 + 62195757 CT i panPan2.chr20 T 133 C 0 s gorGor5.CYUI01015750v1 799398 2 - 1017659 CT i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92007605 1 - 92844088 -T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656801 1 + 96509753 -T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107750 1 - 16982598 -T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955823 1 - 3785965 -c i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623491 1 - 90373283 -T i chlSab2.chr2 C 0 C 0 e nomLeu3.chr13 109290368 153 - 110113093 T e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507164 224 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=2395.000000 s hg38.chr20_KI270871v1_alt 49455 1 + 58661 G s panTro5.chr20 65624969 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384945 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799400 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92007606 1 - 92844088 G i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95656802 1 + 96509753 A i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16107751 1 - 16982598 G i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2955824 1 - 3785965 a i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89623492 1 - 90373283 G i chlSab2.chr2 C 0 T 89 s calJac3.chr5 57447490 1 + 159171411 G i calJac3.chr5 T 52 C 0 e nomLeu3.chr13 109290368 153 - 110113093 T e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507164 224 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=36768.000000 s hg38.chr20_KI270871v1_alt 49456 8 + 58661 CACCTACC s panTro5.chr20 65624970 8 + 66533130 CACCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384946 8 + 62195757 TACCTACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799401 8 - 1017659 CACCTACC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92007608 8 - 92844088 CGCCTACC i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95656804 8 + 96509753 CACCTAGC i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16107753 8 - 16982598 CGCCTACC i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2955826 8 - 3785965 caCCTACC i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89623404 8 - 90373283 CACCTACC i chlSab2.chr2 T 89 C 0 s manLeu1.NW_012104365v1 5506940 8 + 6149316 CACCTACC i manLeu1.NW_012104365v1 T 224 C 0 s calJac3.chr5 57447491 8 + 159171411 CACCTACC i calJac3.chr5 C 0 C 0 e nomLeu3.chr13 109290368 153 - 110113093 T e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=57249.000000 s hg38.chr20_KI270871v1_alt 49464 13 + 58661 CCAGGGAGCAGGG s panTro5.chr20 65624978 13 + 66533130 CCAGGGAGCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384954 13 + 62195757 CCGGGCAGCAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799409 13 - 1017659 CCAGGGAGCAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290215 13 - 110113093 CCAGGTAGGACGG i nomLeu3.chr13 T 153 C 0 s rheMac8.chr10 92007616 13 - 92844088 CCAGGCAGTAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656812 13 + 96509753 CGGGGAAGCAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107761 13 - 16982598 CCAGGCAGTAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955834 13 - 3785965 CCAGGGAACAGGG i cerAty1.NW_012001373v1 C 0 T 180 s chlSab2.chr2 89623412 13 - 90373283 CCGGGAAGCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506948 13 + 6149316 CCAGGAAGCAGGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447499 13 + 159171411 CCAGGCAGCAGGG i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=168450.000000 s hg38.chr20_KI270871v1_alt 49477 36 + 58661 AGGAGGCTGCACCTACCCCAGGGAGCAGGGAGGAGG s panTro5.chr20 65624991 36 + 66533130 AGGAGGCTGCACCTACCCCAGGGAGCAGGGAGGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384967 36 + 62195757 AGGAGGCTGCACCTACCCCAGGGAGCAGGGAGGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799422 36 - 1017659 AGGAGGTGGCACCTACCCCAGGCAGCAGGGAGGAGG i gorGor5.CYUI01015750v1 C 0 T 120 s nomLeu3.chr13 109290228 36 - 110113093 CAGAGATATCACCTACCCCAGGCAGCAGGGAGGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007629 36 - 92844088 AAGAGCCGGCACCTACCCCAGGGAACACAGAGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656825 36 + 96509753 AGGAGGCGGCACCTACCCCAGGGAGCAGGGAGGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107774 36 - 16982598 AAGAGCCGGCACCTACCCCAGGGAACACAGAGGAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955667 36 - 3785965 AGGAGGCGGCACCTACCCCAGGGAGCAGGGAGGGGG i cerAty1.NW_012001373v1 T 180 C 0 s chlSab2.chr2 89623425 36 - 90373283 AGGAGGCAGCACCTACCCCAGGGAGCAGGGAGGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506961 36 + 6149316 AGGAGGCGGCACCTACCCCAGGGAGCAGGGAGGGGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447512 29 + 159171411 AGGCGGCCACATCTACCCCAGGGAACAGG------- i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=43915.000000 s hg38.chr20_KI270871v1_alt 49513 11 + 58661 CTGCATCTACC s panTro5.chr20 65625027 11 + 66533130 CTGCACCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385003 11 + 62195757 CTGCATCTACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799338 11 - 1017659 CTGTACCTACC i gorGor5.CYUI01015750v1 T 120 C 0 s nomLeu3.chr13 109290264 11 - 110113093 CTGCACCTACC i nomLeu3.chr13 C 0 T 60 s rheMac8.chr10 92007665 11 - 92844088 GGGCACCTACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656861 11 + 96509753 TGGCGCCTACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107810 11 - 16982598 GGGCACCTACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955703 11 - 3785965 TGGCGCCTACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623461 11 - 90373283 TGGCGCCTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506997 11 + 6149316 TAGCGCCTACC i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447541 9 + 159171411 --GCATCTGCC i calJac3.chr5 C 0 T 81 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=122482.000000 s hg38.chr20_KI270871v1_alt 49524 30 + 58661 CCAGGCAGCAGGGAGGAGGCAGCACCTACC s panTro5.chr20 65625038 30 + 66533130 CCAGGGAGCAGGGAGGAGGCTGCACCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385014 30 + 62195757 CCAGGCAGCAGGGAGGAGGCAGCACCTACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799349 30 - 1017659 CCGGGCAGCAGGGAGGAGGCTGCACCTACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290215 30 - 110113093 CCAGGTAGGACGGCAGAGATATCACCTACC i nomLeu3.chr13 T 60 C 0 s rheMac8.chr10 92007676 30 - 92844088 CCAGGTAGCAGGGAGGAGGCAGCACCTACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656872 30 + 96509753 CCAGGCAGTAGGGAAGAGCCGGCACCTACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107821 30 - 16982598 CCAGGTAGCAGGGAGGAGGCAGCACCTACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955714 30 - 3785965 CCAGGTAGTAGGGAAGAGCCGGCACCTACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623472 30 - 90373283 CCAGGCAGTAGGGAAGAGCTGGCACCTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507008 30 + 6149316 CCAGGCAGTAGGGAAGAGCCGGCACCTACC i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447550 81 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=23757.000000 s hg38.chr20_KI270871v1_alt 49554 6 + 58661 CCAGGC s panTro5.chr20 65625068 6 + 66533130 CCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385044 6 + 62195757 CCTGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799379 6 - 1017659 CCAGGC i gorGor5.CYUI01015750v1 C 0 I 30 s nomLeu3.chr13 109290245 6 - 110113093 CCAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007706 6 - 92844088 CCAGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656902 6 + 96509753 CCAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107851 6 - 16982598 CCAGTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955744 6 - 3785965 CCAGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623502 6 - 90373283 CCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507038 6 + 6149316 CCAGGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447469 6 + 159171411 CCAGGT i calJac3.chr5 T 81 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=181267.000000 s hg38.chr20_KI270871v1_alt 49560 37 + 58661 AGCAGGGAGGAGGCTGCACCTACCCCAGGCAGCAGGG s panTro5.chr20 65625074 37 + 66533130 AGCAGGGAGGAGGCTGCACCTACCCCAGGCAGCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385050 37 + 62195757 AGCAGGGAGGAGGCTGCACCTACCCCAGGCAGCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799415 37 - 1017659 AGCAGGGAGGAGGTGGCACCTACCCCAGGCAGCAGGG i gorGor5.CYUI01015750v1 I 30 C 0 s nomLeu3.chr13 109290251 37 - 110113093 AGCAGGGAGGAGGCTGCACCTACCCCAGGCAGCAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007712 37 - 92844088 AGTAGGGAGGAGGCAGCACCTACCCCAGGGAACAGGG i rheMac8.chr10 C 0 T 180 s macFas5.chr10 95656908 37 + 96509753 AACACAGAGGAGGGGGCACCTACCCcaggtagcaggg i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107857 37 - 16982598 AGTAGGGAGGAGGCAGCACCTACCCCAGGGAACAGGG i macNem1.NW_012014244v1 C 0 T 180 s cerAty1.NW_012001373v1 2955750 37 - 3785965 AACACAGAGGAGGGGGCACCTACCCcaggtagcaggg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623508 37 - 90373283 AACACAGAGGAGGGGGCACCTACCCCAGGTAGCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507044 37 + 6149316 AACACAGAGGAGGGGGCACCTACCCcaggtaacaggg i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447475 37 + 159171411 AGGAGGCCAGAGATAGCACCTACCCCAGGCAGCAGGG i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=27666.000000 s hg38.chr20_KI270871v1_alt 49597 7 + 58661 AGGAGGC s panTro5.chr20 65625111 7 + 66533130 AGGAGGC i panTro5.chr20 C 0 I 686 s panPan2.chr20 61385087 7 + 62195757 AGGAGGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799452 7 - 1017659 AGGAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290288 7 - 110113093 AGGAGGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656945 7 + 96509753 aggaggc i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955787 7 - 3785965 aggaggc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623545 7 - 90373283 AGGAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507081 7 + 6149316 aggaggc i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447512 7 + 159171411 AGGCGGC i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107894 180 - 16982598 T e rheMac8.chr10 92007749 180 - 92844088 T a score=74119.000000 s hg38.chr20_KI270871v1_alt 49604 23 + 58661 TGCATCTACCCCAGGGAGCAGGG s panTro5.chr20 65625804 23 + 66533130 TGCACCTACCCCAGGGAGCAGGG i panTro5.chr20 I 686 C 0 s panPan2.chr20 61385094 23 + 62195757 GGCACCTACCCCAGGCAGCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799459 23 - 1017659 TGCATCTACCCCAGGGAGCAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290295 23 - 110113093 TGCACCTACCCCAGGGAGCAGGC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656952 23 + 96509753 agcacctaccccagtcagtaggg i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955794 23 - 3785965 agcacctaccccaggcagtaggg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623552 23 - 90373283 AGCATCTACCCCAGGGAACACGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507088 23 + 6149316 agcacctaccccaggtagcaggg i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447519 23 + 159171411 CACATCTACCCCAGGGAACAGGG i calJac3.chr5 C 0 T 52 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107894 180 - 16982598 T e rheMac8.chr10 92007749 180 - 92844088 T a score=34455.000000 s hg38.chr20_KI270871v1_alt 49627 12 + 58661 AGGAGGCTGCAC s panTro5.chr20 65625827 12 + 66533130 AGGAGGCTGCAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385117 12 + 62195757 AGGAGGCTGCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799482 12 - 1017659 AGGAGGCTGCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290318 12 - 110113093 AGGAGGCTGCAC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656975 12 + 96509753 aggaggcagcaC i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2955817 12 - 3785965 aggaggcagcaC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623575 12 - 90373283 AGGAGGGGGCAC i chlSab2.chr2 C 0 T 169 s manLeu1.NW_012104365v1 5507111 12 + 6149316 aggaggcagcac i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e macNem1.NW_012014244v1 16107894 180 - 16982598 T e rheMac8.chr10 92007749 180 - 92844088 T a score=39417.000000 s hg38.chr20_KI270871v1_alt 49639 18 + 58661 CCACCCCAGGGAGCAGGG s panTro5.chr20 65625839 18 + 66533130 CTACCCCAGGCAGCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385129 18 + 62195757 CTACCCCAGGGAGCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799494 18 - 1017659 CTACCCCATGGAGCAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290330 18 - 110113093 CTACCCCAGGCAGCAGGG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95656987 18 + 96509753 CTACCCCAGGGAACAGGG i macFas5.chr10 C 0 T 180 s cerAty1.NW_012001373v1 2955829 18 - 3785965 CTACCCCAGGGAACAGGG i cerAty1.NW_012001373v1 C 0 T 201 s manLeu1.NW_012104365v1 5507123 18 + 6149316 ctaccccagtcagtaggg i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e macNem1.NW_012014244v1 16107894 180 - 16982598 T e rheMac8.chr10 92007749 180 - 92844088 T a score=64202.000000 s hg38.chr20_KI270871v1_alt 49657 23 + 58661 AAGAGGCTGCACCCACCCCAGGG s panTro5.chr20 65625857 23 + 66533130 AGGAGGCAGCACCTACCCCTGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385147 23 + 62195757 AGGAGGTGGCACCTACCCCAAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799512 23 - 1017659 AAGAGGCTGCATCTACCCCAGGG i gorGor5.CYUI01015750v1 C 0 T 30 s nomLeu3.chr13 109290348 23 - 110113093 AGGGGATGGCACCTACCCCAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007569 23 - 92844088 AGGAGGCGGCACCTACCCCAGGG i rheMac8.chr10 T 180 C 0 s macFas5.chr10 95656825 23 + 96509753 AGGAGGCGGCACCTACCCCAGGG i macFas5.chr10 T 180 C 0 s macNem1.NW_012014244v1 16107714 23 - 16982598 AGGAGGCGGCACCTACCCCAGGG i macNem1.NW_012014244v1 T 180 C 0 s manLeu1.NW_012104365v1 5507141 23 + 6149316 aggaggcagcaCCTACCCCAGGG i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=22167.000000 s hg38.chr20_KI270871v1_alt 49680 7 + 58661 AGCAGGG s panTro5.chr20 65625880 7 + 66533130 AGCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385170 7 + 62195757 AACAGGG i panPan2.chr20 C 0 T 234 s gorGor5.CYUI01015750v1 799505 7 - 1017659 AGCAGGG i gorGor5.CYUI01015750v1 T 30 C 0 s nomLeu3.chr13 109290371 7 - 110113093 AACAGGG i nomLeu3.chr13 C 0 T 60 s rheMac8.chr10 92007592 7 - 92844088 AGCAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656848 7 + 96509753 AGCAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107737 7 - 16982598 AGCAGGG i macNem1.NW_012014244v1 C 0 C 0 s manLeu1.NW_012104365v1 5507164 7 + 6149316 AACAGGG i manLeu1.NW_012104365v1 C 0 T 231 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=23455.000000 s hg38.chr20_KI270871v1_alt 49687 16 + 58661 AAGAGGCTGCACCTAC s panTro5.chr20 65625887 16 + 66533130 AGGAGGCTGCACCTAC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799512 16 - 1017659 AAGAGGCTGCATCTAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290318 16 - 110113093 AGGAGGCTGCACCTAC i nomLeu3.chr13 T 60 C 0 s rheMac8.chr10 92007599 16 - 92844088 AGGGGGTGGCGCCTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656855 16 + 96509753 AGGGGGTGGCGCCTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107744 16 - 16982598 AGGGGGTGGCGCCTAC i macNem1.NW_012014244v1 C 0 T 67 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e panPan2.chr20 61385177 234 + 62195757 T a score=1500.000000 s hg38.chr20_KI270871v1_alt 49703 1 + 58661 C s panTro5.chr20 65625903 1 + 66533130 C i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799528 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290334 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007615 1 - 92844088 C i rheMac8.chr10 C 0 T 61 s macFas5.chr10 95656871 1 + 96509753 C i macFas5.chr10 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T e panPan2.chr20 61385177 234 + 62195757 T a score=3000.000000 s hg38.chr20_KI270871v1_alt 49704 2 + 58661 CC s panTro5.chr20 65625904 2 + 66533130 CC i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799529 2 - 1017659 CC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290335 2 - 110113093 CC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007555 2 - 92844088 CC i rheMac8.chr10 T 61 C 0 s macFas5.chr10 95656872 2 + 96509753 CC i macFas5.chr10 C 0 T 90 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T e panPan2.chr20 61385177 234 + 62195757 T a score=187.000000 s hg38.chr20_KI270871v1_alt 49706 1 + 58661 G s panTro5.chr20 65625906 1 + 66533130 A i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799531 1 - 1017659 A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290337 1 - 110113093 A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007557 1 - 92844088 G i rheMac8.chr10 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T e macFas5.chr10 95656874 90 + 96509753 T e panPan2.chr20 61385177 234 + 62195757 T a score=-3594.000000 s hg38.chr20_KI270871v1_alt 49707 4 + 58661 --GGGC s panTro5.chr20 65625907 3 + 66533130 --GG-C i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799532 4 - 1017659 --GGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290338 3 - 110113093 --GG-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007558 4 - 92844088 GGGA-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656784 4 + 96509753 AGGT-- i macFas5.chr10 T 90 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e chlSab2.chr2 89623587 169 - 90373283 T e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T e panPan2.chr20 61385177 234 + 62195757 T a score=21660.000000 s hg38.chr20_KI270871v1_alt 49711 13 + 58661 AGCAGGGAGGAGG s panTro5.chr20 65625910 13 + 66533130 AGCAGGGAGGAGG i panTro5.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799536 13 - 1017659 AGCAGGGAGGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290341 13 - 110113093 AGCAGGGAGGGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007562 13 - 92844088 AGCAGGGAGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656788 13 + 96509753 AGGAGGGCAGAGG i macFas5.chr10 C 0 C 0 s chlSab2.chr2 89623418 13 - 90373283 AGCAGGGAGGAGG i chlSab2.chr2 T 169 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T e panPan2.chr20 61385177 234 + 62195757 T a score=-712.000000 s hg38.chr20_KI270871v1_alt 49724 2 + 58661 CT s panTro5.chr20 65625923 2 + 66533130 TG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384943 2 + 62195757 CT i panPan2.chr20 T 234 C 0 s gorGor5.CYUI01015750v1 799549 2 - 1017659 CT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290354 1 - 110113093 -T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007575 2 - 92844088 CG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656801 2 + 96509753 TA i macFas5.chr10 C 0 C 0 s chlSab2.chr2 89623431 2 - 90373283 CA i chlSab2.chr2 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447542 52 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T a score=1888.000000 s hg38.chr20_KI270871v1_alt 49726 1 + 58661 G s panTro5.chr20 65625925 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384945 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799551 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290355 1 - 110113093 G i nomLeu3.chr13 C 0 T 141 s rheMac8.chr10 92007577 1 - 92844088 G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656803 1 + 96509753 T i macFas5.chr10 C 0 C 0 s chlSab2.chr2 89623433 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s calJac3.chr5 57447490 1 + 159171411 G i calJac3.chr5 T 52 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5507171 231 + 6149316 T e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T e macNem1.NW_012014244v1 16107760 67 - 16982598 T a score=29476.000000 s hg38.chr20_KI270871v1_alt 49727 8 + 58661 CACCTACC s panTro5.chr20 65625926 8 + 66533130 CATCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384946 8 + 62195757 TACCTACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799552 8 - 1017659 CATCTACC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92007578 8 - 92844088 CACCTACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656804 8 + 96509753 CACCTAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107693 8 - 16982598 CACCTACC i macNem1.NW_012014244v1 T 67 C 0 s chlSab2.chr2 89623434 8 - 90373283 CACCTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506940 8 + 6149316 CACCTACC i manLeu1.NW_012104365v1 T 231 C 0 s calJac3.chr5 57447491 8 + 159171411 CACCTACC i calJac3.chr5 C 0 C 0 e nomLeu3.chr13 109290356 141 - 110113093 T e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=17411.000000 s hg38.chr20_KI270871v1_alt 49735 6 + 58661 CCAGGG s panTro5.chr20 65625934 6 + 66533130 CCAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384954 6 + 62195757 CCGGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799560 6 - 1017659 CCAGGG i gorGor5.CYUI01015750v1 C 0 T 30 s nomLeu3.chr13 109290215 6 - 110113093 CCAGGT i nomLeu3.chr13 T 141 C 0 s rheMac8.chr10 92007586 6 - 92844088 CCAGGG i rheMac8.chr10 C 0 T 30 s macFas5.chr10 95656812 6 + 96509753 CGGGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107701 6 - 16982598 CGGGGA i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89623442 6 - 90373283 CCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506948 6 + 6149316 CCAGGA i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447499 6 + 159171411 CCAGGC i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=69065.000000 s hg38.chr20_KI270871v1_alt 49741 19 + 58661 AGCAGGGAGGAGGCTGCAT s panTro5.chr20 65625940 19 + 66533130 AGCAGGGAGGAGGCTGCAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384960 19 + 62195757 AGCAGGCAGGAGGCTGCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799536 19 - 1017659 AGCAGGGAGGAGGCTGCAT i gorGor5.CYUI01015750v1 T 30 C 0 s nomLeu3.chr13 109290221 19 - 110113093 AGGACGGCAGAGATATCAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007562 19 - 92844088 AGCAGGGAGGAGGCGGCAC i rheMac8.chr10 T 30 C 0 s macFas5.chr10 95656818 19 + 96509753 AGCAGGGAGGAGGCGGCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107707 19 - 16982598 AGCAGGGAGGAGGCGGCAC i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89623448 19 - 90373283 AGCAGGGAGGGGGTGGCGC i chlSab2.chr2 C 0 T 60 s manLeu1.NW_012104365v1 5506954 19 + 6149316 AGCAGGGAGGAGGCGGCAC i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447505 19 + 159171411 AGCAGGGAGGCGGCCACAT i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=67957.000000 s hg38.chr20_KI270871v1_alt 49760 17 + 58661 CTACCCCAGGGAGCAGG s panTro5.chr20 65625959 17 + 66533130 CTACCCCAGGGAGCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384979 17 + 62195757 CTACCCCAGGGAGCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799555 17 - 1017659 CTACCCCAGGGAGCAGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290240 17 - 110113093 CTACCCCAGGCAGCAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007581 17 - 92844088 CTACCCCAGGGAGCAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656837 17 + 96509753 CTACCCCAGGGAGCAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107726 17 - 16982598 CTACCCCAGGGAGCAGG i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89623407 17 - 90373283 CTACCCCGGGAAGCAGG i chlSab2.chr2 T 60 C 0 s calJac3.chr5 57447524 17 + 159171411 CTACCCCAGGGAACAGG i calJac3.chr5 C 0 T 72 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e manLeu1.NW_012104365v1 5506973 0 + 6149316 C e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=50006.000000 s hg38.chr20_KI270871v1_alt 49777 18 + 58661 GAGGAGGCTGCATCTACC s panTro5.chr20 65625976 18 + 66533130 GAGGAGGCGGCACCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384996 18 + 62195757 GAGGAGGCTGCATCTACC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799572 18 - 1017659 GAGGAGGCTGCATCTACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290257 18 - 110113093 GAGGAGGCTGCACCTACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007598 18 - 92844088 GAGGGGGTGGCGCCTACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656854 18 + 96509753 GAGGGGGTGGCGCCTACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107743 18 - 16982598 GAGGGGGTGGCGCCTACC i macNem1.NW_012014244v1 C 0 C 0 s chlSab2.chr2 89623424 18 - 90373283 GAGGAGGCAGCACCTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506973 5 + 6149316 -------------CTACC i manLeu1.NW_012104365v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e calJac3.chr5 57447541 72 + 159171411 T e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=78423.000000 s hg38.chr20_KI270871v1_alt 49795 22 + 58661 CCAGGCAGCAGGGAGGAGGCAG s panTro5.chr20 65625994 22 + 66533130 CCAGGCAGCAGGGAGGAGAATG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385014 22 + 62195757 CCAGGCAGCAGGGAGGAGGCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799590 22 - 1017659 CCAGGCAGCAGGGAGGAGGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290275 22 - 110113093 CCAGGCAGCAGGGAGGAGGCTG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007616 22 - 92844088 CCAGGCAGTAGGGAAGAGCCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656872 22 + 96509753 CCAGGCAGTAGGGAAGAGCCGG i macFas5.chr10 C 0 T 90 s macNem1.NW_012014244v1 16107761 22 - 16982598 CCAGGCAGTAGGGAAGAGCCGG i macNem1.NW_012014244v1 C 0 T 90 s chlSab2.chr2 89623442 22 - 90373283 CCAGGGAGCAGGGAGGGGGTGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5506978 22 + 6149316 CCAGGGAGCAGGGAGGGGGTAG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447469 22 + 159171411 CCAGGTAGGAGGCCAGAGATAG i calJac3.chr5 T 72 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e cerAty1.NW_012001373v1 2955847 201 - 3785965 T a score=54094.000000 s hg38.chr20_KI270871v1_alt 49817 14 + 58661 CACCTACCCCAGGC s panTro5.chr20 65626016 14 + 66533130 CACCTACCCCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385036 14 + 62195757 CACCTACCCCTGGC i panPan2.chr20 C 0 T 60 s nomLeu3.chr13 109290297 14 - 110113093 CACCTACCCCAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007638 14 - 92844088 CACCTACCCCAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656804 14 + 96509753 CACCTAGCCGGGGA i macFas5.chr10 T 90 C 0 s macNem1.NW_012014244v1 16107693 14 - 16982598 CACCTACCCGGGGA i macNem1.NW_012014244v1 T 90 C 0 s cerAty1.NW_012001373v1 2955646 14 - 3785965 CACCTACCCCGGGA i cerAty1.NW_012001373v1 T 201 C 0 s chlSab2.chr2 89623464 14 - 90373283 CGCCTACCCCAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507000 14 + 6149316 CGCCTACCCCAGGC i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447491 14 + 159171411 CACCTACCCCAGGC i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C e gorGor5.CYUI01015750v1 799612 0 - 1017659 C a score=99359.000000 s hg38.chr20_KI270871v1_alt 49831 24 + 58661 AGCAGGGAGGAGGCTGCACCTACC s panTro5.chr20 65626030 24 + 66533130 AGCAGGGAGGAGGCTGCATCTACC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61384990 24 + 62195757 AGCAGGGAGGAGGCTGCATCTACC i panPan2.chr20 T 60 C 0 s gorGor5.CYUI01015750v1 799612 11 - 1017659 -------------CTGTACCTACC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290311 24 - 110113093 AGCAGGCAGGAGGCTGCACCTACC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007652 24 - 92844088 AACACAGAGGAGGGGGCACCTACC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656818 24 + 96509753 AGCAGGGAGGAGGCGGCACCTACC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107707 24 - 16982598 AGCAGGGAGGAGGCGGCACCTACC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955660 24 - 3785965 AGCAGGGAGGAGGCGGCACCTACC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623478 24 - 90373283 AGTAGGGAAGAGCTGGCACCTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507014 24 + 6149316 AGTAGGGAAGAGCCGGCACCTACC i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447505 24 + 159171411 AGCAGGGAGGCGGCCACATCTACC i calJac3.chr5 C 0 T 60 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=28580.000000 s hg38.chr20_KI270871v1_alt 49855 6 + 58661 CCAGGC s panTro5.chr20 65626054 6 + 66533130 CCAGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385014 6 + 62195757 CCAGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799623 6 - 1017659 CCGGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290335 6 - 110113093 CCAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007676 6 - 92844088 CCAGGT i rheMac8.chr10 C 0 T 90 s macFas5.chr10 95656842 6 + 96509753 CCAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107731 6 - 16982598 CCAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955684 6 - 3785965 CCAGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623502 6 - 90373283 CCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507038 6 + 6149316 CCAGGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447469 6 + 159171411 CCAGGT i calJac3.chr5 T 60 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=65173.000000 s hg38.chr20_KI270871v1_alt 49861 16 + 58661 AGCAGGGAGGAGGTGG s panTro5.chr20 65626060 16 + 66533130 AGCAGGGAGGAGGCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385020 16 + 62195757 AGCAGGGAGGAGGCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799629 16 - 1017659 AGCAGGGAGGAGGCTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290341 16 - 110113093 AGCAGGGAGGGGATGG i nomLeu3.chr13 C 0 T 120 s rheMac8.chr10 92007592 16 - 92844088 AGCAGGGAGGGGGTGG i rheMac8.chr10 T 90 C 0 s macFas5.chr10 95656848 16 + 96509753 AGCAGGGAGGGGGTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107737 16 - 16982598 AGCAGGGAGGGGGTGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955690 16 - 3785965 AGCAGGGAGGGGGTGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623508 16 - 90373283 AACACAGAGGAGGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507044 16 + 6149316 AACACAGAGGAGGGGG i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447475 16 + 159171411 AGGAGGCCAGAGATAG i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=189208.000000 s hg38.chr20_KI270871v1_alt 49877 37 + 58661 CACCTACCCCAGGCAGCAGGGAGGAGGCTGCATCTAC s panTro5.chr20 65626076 37 + 66533130 CACCTACCCCTGGCAGCAGGGAGGAGGCTGCACCTAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385036 37 + 62195757 CACCTACCCCTGGCAGCAGGGAGGAGGCTGCACCTAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799645 37 - 1017659 CACCTACCCCAGGGAGCAGGGAGGAGGCTGCATCTAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290237 37 - 110113093 CACCTACCCCAGGCAGCAGGGAGGAGGCTGCACCTAC i nomLeu3.chr13 T 120 C 0 s rheMac8.chr10 92007608 37 - 92844088 CGCCTACCCCAGGCAGTAGGGAAGAGCCGGCACCTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656864 37 + 96509753 CGCCTACCCCAGGCAGTAGGGAAGAGCCGGCACCTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107753 37 - 16982598 CGCCTACCCCAGGCAGTAGGGAAGAGCCGGCACCTAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955706 37 - 3785965 CGCCTACCCCAGGTAGTAGGGAAGAGCCGGCACCTAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623524 37 - 90373283 CACCTACCCCAGGTAGCAGGGAGGAGGCAGCATCTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507060 37 + 6149316 CACCTACCCcaggtaacagggaggaggcagcacctac i manLeu1.NW_012104365v1 C 0 C 0 s calJac3.chr5 57447491 37 + 159171411 CACCTACCCCAGGCAGCAGGGAGGCGGCCACATCTAC i calJac3.chr5 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C e colAng1.NW_012114444v1 4734516 0 - 5823884 C a score=78251.000000 s hg38.chr20_KI270871v1_alt 49914 14 + 58661 CCCAGGGAGCAGGG s panTro5.chr20 65626113 14 + 66533130 CCCAGGCAGCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385073 14 + 62195757 CCCAGGCAGCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799682 14 - 1017659 CCCAGGCAGCAGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290274 14 - 110113093 CCCAGGCAGCAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007645 14 - 92844088 CCCAGGGAACACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656901 14 + 96509753 CCCAGGGAACACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107790 14 - 16982598 CCCAGGGAACACAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955743 14 - 3785965 CCCAGGGAACACAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623561 14 - 90373283 CCCAGGGAACACGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507097 14 + 6149316 cccaggtagcaggg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734516 14 - 5823884 CCcagggagcaggg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447528 14 + 159171411 CCCAGGGAACAGGG i calJac3.chr5 C 0 T 60 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=37715.000000 s hg38.chr20_KI270871v1_alt 49928 8 + 58661 AGGAGGCG s panTro5.chr20 65626127 8 + 66533130 AGGAGGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385087 8 + 62195757 AGGAGGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799696 8 - 1017659 AGGAGGCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290288 8 - 110113093 AGGAGGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007659 8 - 92844088 AGGAGGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656915 8 + 96509753 AGGAGGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107804 8 - 16982598 AGGAGGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955757 8 - 3785965 AGGAGGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623575 8 - 90373283 AGGAGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507111 8 + 6149316 aggaggca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734530 8 - 5823884 aggaggca i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447482 8 + 159171411 CAGAGATA i calJac3.chr5 T 60 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e cebCap1.NW_016107870v1 414366 0 + 1231380 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=196857.000000 s hg38.chr20_KI270871v1_alt 49936 30 + 58661 GCACCTACCCCAGGCAGCAGGGAGGAAAAT s panTro5.chr20 65626135 30 + 66533130 GCACCTACCCCAGGCAGCAGGGAGGAGGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385095 30 + 62195757 GCACCTACCCCAGGCAGCAGGGAGGAGGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799704 30 - 1017659 GCACCTACCCCAGGGAGCAGGGAGGAGGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290296 30 - 110113093 GCACCTACCCCAGGGAGCAGGCAGGAGGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007667 30 - 92844088 GCACCTACCCCAGGTAGCAGGGAGGAGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656923 30 + 96509753 GCACCTACCCcaggtagcagggaggaggca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107812 30 - 16982598 GCACCTACCCCAGGTAGCAGGGAGGAGGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955765 30 - 3785965 GCACCTACCCcaggtagcagggaggaggca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623583 30 - 90373283 GCACCTATCCCAGGCAGCAGGGAGGAGGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507119 13 + 6149316 gcacctaccccag----------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734538 30 - 5823884 gcacctaccccagggagcagggagGGGGTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447490 30 + 159171411 GCACCTACCCCAGGCAGCAGGGAGGCGGCC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 414366 30 + 1231380 GCACCTACCCcaggcagcagggaggaggct i cebCap1.NW_016107870v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e aotNan1.NW_018500483v1 1971621 0 + 11732439 C e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=103555.000000 s hg38.chr20_KI270871v1_alt 49966 15 + 58661 GCACCTACCCCAGGG s panTro5.chr20 65626165 15 + 66533130 GCATCTACCCCAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385125 15 + 62195757 GCACCTACCCCAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799734 15 - 1017659 GCACCTACCCCAGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290326 15 - 110113093 GCACCTACCCCAGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007697 15 - 92844088 GCACCTACCCCAGTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656953 15 + 96509753 gcacctaccccagtc i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107842 15 - 16982598 GCACCTACCCCAGTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955795 15 - 3785965 gcacctaccccaggc i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623613 15 - 90373283 GCACCTACCCCAGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507132 2 + 6149316 -------------tc i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734568 15 - 5823884 GCGCCTACCCCAGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447520 15 + 159171411 ACATCTACCCCAGGG i calJac3.chr5 C 0 T 30 s cebCap1.NW_016107870v1 414396 15 + 1231380 gcatctaccccaggc i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971621 15 + 11732439 GCACCTACCCCAGGC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=111511.000000 s hg38.chr20_KI270871v1_alt 49981 15 + 58661 AGCAGGGAGGAGGTG s panTro5.chr20 65626180 15 + 66533130 AGCAGGGAGGAGGTG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385140 15 + 62195757 AGCAGGGAGGAGGTG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799749 15 - 1017659 AGCAGGGAGGGGGTG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290341 15 - 110113093 AGCAGGGAGGGGATG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007712 15 - 92844088 AGTAGGGAGGAGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656968 15 + 96509753 agtagggaggaggca i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107857 15 - 16982598 AGTAGGGAGGAGGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955810 15 - 3785965 agtagggaggaggca i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623628 15 - 90373283 AGCAGGGAGGAGGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507134 15 + 6149316 agtagggaggaggca i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734583 15 - 5823884 CGTAGGGAAGAGCCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447505 15 + 159171411 AGCAGGGAGGCGGCC i calJac3.chr5 T 30 C 0 s cebCap1.NW_016107870v1 414411 15 + 1231380 agcagggaggaggct i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971636 15 + 11732439 AGCAGGGAGGAGGCC i aotNan1.NW_018500483v1 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I e otoGar3.GL873542 22184640 47 + 22939663 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=78772.000000 s hg38.chr20_KI270871v1_alt 49996 8 + 58661 GCACCTAC s panTro5.chr20 65626195 8 + 66533130 GCACCTAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385155 8 + 62195757 GCACCTAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799764 8 - 1017659 GCACCTAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290356 8 - 110113093 GCACCTAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007727 8 - 92844088 GCACCTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656983 8 + 96509753 gcaCCTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107872 8 - 16982598 GCACCTAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955825 8 - 3785965 gcaCCTAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623643 8 - 90373283 GCACCTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507149 8 + 6149316 gcaCCTAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734598 8 - 5823884 GCACCTAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447520 8 + 159171411 ACATCTAC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 414426 8 + 1231380 gcaTCTAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971651 8 + 11732439 ACATCTAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184687 8 + 22939663 GCACCAAT i otoGar3.GL873542 I 47 C 0 e dasNov3.JH567899 126357 68 + 555560 I e mm10.chr2 181126304 39 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=84253.000000 s hg38.chr20_KI270871v1_alt 50004 9 + 58661 -CCCAAGGAA s panTro5.chr20 65626203 9 + 66533130 -CCCAAGGAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385163 9 + 62195757 -CCCAAGGAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799772 9 - 1017659 -CCCAAGGAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290364 9 - 110113093 -CCCAGGGAA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007735 9 - 92844088 -CCCAGGGAA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95656991 9 + 96509753 -CCCAGGGAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107880 9 - 16982598 -CCCAGGGAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955833 9 - 3785965 -CCCAGGGAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623651 9 - 90373283 -CCCAGGGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507157 9 + 6149316 -CCCAGGGAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734606 9 - 5823884 -CCCAGGGAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447528 9 + 159171411 -CCCAGGGAA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 414434 9 + 1231380 -TCCAGGGAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971659 9 + 11732439 -CCCAGGGAA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184695 9 + 22939663 -CCCAGCACG i otoGar3.GL873542 C 0 I 3 s mm10.chr2 181126343 9 + 182113224 CCCCAAGAA- i mm10.chr2 I 39 C 0 e dasNov3.JH567899 126357 68 + 555560 I e canFam3.chr24 47094340 119 + 47698779 I e saiBol1.JH378156 15565538 0 + 16356641 C a score=1433519.000000 s hg38.chr20_KI270871v1_alt 50013 142 + 58661 CAGGGCATCTG--CCCCCACATCAACCACCTGAGCAGCAGGCA-GCCTAGAGTGGTGCCCCAGAGCCTCCTCTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG s panTro5.chr20 65626212 142 + 66533130 CAGGGCATCTG--CCCCCACATCAACCACCTGAGCAGCAGGCA-GCCTAGAGTGGTGCCCCAGAGCCTCCTCTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385172 142 + 62195757 CAGGGCATCTG--CCCCCACATCAACCACCTGAGCAGCAGGCA-GCCTAGAGTGGTGCCCCAGAGCCTCCTCTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799781 142 - 1017659 CAGGGCATCTG--CCCCCACATCAACCACCTGAGCAGCAGGCA-GCCTAGAGTGGTGCCCCACAGCCTCCTCTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290373 142 - 110113093 CAGGGCATCTG--CCCCCACATCAACCACCTGAGCAGCAGGCA-GCCTAGAGTGGGGCCCCAGAGCCTCCTTTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007744 144 - 92844088 CAGGGCATCTGCCCCCCCACATCAACTACCTGAGCAGCAGGCA-GCCAGGAGTGGGGCCCCAGAGCCTCCTTTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657000 144 + 96509753 CAGGGCATCTGCCCCCCCACATCAACTACCTGAGCAGCAGGCA-GCCAGGAGTGGGGCCCCAGAGCCTCCTTTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACTTGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16107889 144 - 16982598 CAGGGCATCTGCCCCCCCACATCAACTACCTGAGCAGCAGGCA-GCCAGGAGTGGGGCCCCAGAGCCTCCTTTCCCCGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955842 144 - 3785965 CAGGGCATCTGCTCCCCCACATCAACCACCTGAGCAGCAGGCA-GCCAGGAGTGGGGCCCCAGAGCCTCCTTTCCCTGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623660 144 - 90373283 CAGGGCATCTGCCCCCCCACATCAACCACCTGAGCAGCAGGCA-GCCAGGAATGGGGCCCCAGAGCCTCCTTTCCCCGCACACACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507166 155 + 6149316 CAGGGCATCTGCCCCCCCACATCAACCACCTGAGCAGCAGGCA-GCCAGGAGTGGGGCCCCAGAGCCTCCTTTCCCTGCGCACACCTTctgtctccagcctgtctccagcctgGACGGGTTTCCACAACAATGTAACTTTTCAATGACAGGAAAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734615 142 - 5823884 CAGAGCATCTG--CCCCCACATCAACCACCTGAGCAGTAGGCA-GCCAGCAATGGGGCCCCAGAGTCTCCTTTCCCTGCACACACCTC-----------CTGTCTCCAGCCTGAATGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447537 140 + 159171411 CAGGGCATCTG--CCTCCACATCAGCCACATGAGCAGCAAGTG-G-CAAGAGTGGAG-CCCAGAGCCTCCCTTCCCTGCACCCACCTT-----------CTGTTTCCAGCCTGGACAGATTTCCATAAAAATGTAACTTTTCAATGACAGGAAAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565538 141 + 16356641 CAGGGCATCTG--CTCCCACATCAGCCACATGAGCAGCAAGTG-GCCAAGAGTGGGG-CCCAGAGCCTCCCTTCTCTGCACCCACCTT-----------CTGTCTCCAGCCTGGATGGGTTTCCACAAAAATGTAACTTTTCAATGACAGGAAAAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414443 140 + 1231380 CAGGGTATCTG--CCCCCACATCAGCCACATGAGCAGCAAGTG-GCCGAGAGTGGGG-CCCAGAGCCTCCC-TCCCTGCACCCAACTT-----------CTGTCTCCAGCCTGGATGGGTTTCCACAAAAATGTAACTTTTCAATGCCAGGAAAGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971668 141 + 11732439 CAGGGCATCTG--CCCCCACATCAGCCACATGAGCAGCAAGTG-GCCAGGAGTGGGG-CCCAGAGCCTCCCTTCCCTGCACCCACCTT-----------CTGTCTCCAGCCTGGACGGGTTTCCATAAAGATGTAACTTTTCAATGACAGGAAAAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184707 119 + 22939663 CCAGGCAGCT---CCCCCACATCAGCCGTGGAAGCAGCAAGTG-GCCAAAAGCAGGA-CTCAGAGCCGTCCAGTCCTGCCTCTACCTG-----------CCGCCG-CAGCCTG---------CCAC---------ACCCACCA--GACAGCAACAT i otoGar3.GL873542 I 3 C 0 s mm10.chr2 181126352 115 + 182113224 TAGTAGGCCTT--CTTCTCTGCTGGCCACCTGAATAGGAGGGGTGGCAGGCATGGT--CCCAGA-----CCCTTGCTCTACAGGCTTT-----------CTCCCTCCAG------AGGCTTTCTAC--AAATGTAAT-------------GAACAG i mm10.chr2 C 0 C 0 e dasNov3.JH567899 126357 68 + 555560 I e canFam3.chr24 47094340 119 + 47698779 I a score=1488228.000000 s hg38.chr20_KI270871v1_alt 50155 155 + 58661 TGAGTGTTAAACTTCTCTGCATATTTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCCGACCTGCAC-CTTGCGTGAAGATGTG-CATG-GAG-CCCCA-C-GCAGCACCATTTGCAGCGGCAAAGTCCTAG s panTro5.chr20 65626354 155 + 66533130 TGAGTGTTAAACTTCTCTGCATATTTGGT--------------CCTTTGGGATAAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCCGACCTGCAC-CTTGCGTGAAGATGTG-CATG-GAG-CCCCA-C-GCAGCACCGTTTGCAGCGGCAAAGTCCTAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385314 155 + 62195757 TGAGTGTTAAACTTCTCTGCATATTTGGT--------------CCTTTGGGATAAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCCGACCTGCAC-CTTGCGTGAAGATGTG-CATG-GAG-CCCCA-C-GCAGCACCGTTTGCAGCGGCAAAGTCCTAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 799923 155 - 1017659 TGAGTGTTAAACTTCTCTGCATATTTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCAGACCTGCAC-CTTGCGTGAAGATGTG-CATG-GAG-CCCCA-C-GCAGCACCATTTGCAGCGGCAAAGTCCTAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290515 136 - 110113093 TGAGCGTTAAACTTCTCTACATATTTGGT--------------CCTTTGGGAAGAGAACA--TTTTTACAGCCACCAGGCAGCTTCCAGGAATTCATCCCGC--------------------AGACGTG-CACG-GAG-CCCCA-C-GCAGCACCGTCTGCAGCAGCAAAGTCCCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92007888 154 - 92844088 TGAGCGTTAAACTTCTCTGCATATCTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCAGACC-GCAC-CTTGGGTGAAGATGTG-CACG-GAG-CCCCA-C-GCGGCACCGTTTGCAGCGGCAAAGTCCTTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657144 155 + 96509753 TGAGCGTTAAACTTCTCTGCATATCTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCAGACCTGCAC-CTTGTGTGAAGATGTG-CACG-GAG-CCCCA-C-GCGGCACCGTTTGCAGCGGCAAAGTCCTTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108033 155 - 16982598 TGAGCGTTAAACTTCTCTGCATATCTGGT--------------CCTCTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGcttctaggaattcatcctgcagacctgcac-cttgtgtgaagatgtg-tacg-gag-cccca-c-gcggcaccgtttgcagcggcaaagtccttg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2955986 155 - 3785965 TGAGCGTTAAACTTCTCTGCATATCTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGcttctaggaattcatcctgcagacctgcac-cttgtgtgaagatgtg-cacg-gag-cccca-c-acggcaccgtttgcagcggcaaagtccttg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623804 155 - 90373283 TGAGCGTTAAACTTCTCTGCATATCTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCATCCTGCAGACCTGCAC-CTTGTGTGAAGATGAG-AACA-GAG-CCCCA-C-GCGACACCGTTTGCAGCGGCAAAGTCCTTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507321 155 + 6149316 TGAGCGTTAAACTTCTCTGCATATCTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGCAGCTTCTAGGAATTCTTCCTGCAGACCTGCAC-CTTGTGTGAAGATGTG-CACG-GAG-CCCCA-C-ACGGCACCGTTTGCAGCGGCAAAGTCCTTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734757 156 - 5823884 TGAGTGTTAAACTTCTCTGCATATCTGGT--------------CCTTTGGGATGAGAACA--TTTTTACAGCCACCAGGAAGCTTCTAGGAATTCATCCTGCAGACCTGCAC-CTTGCGTGACGATGTG-CACG-GAGCCCCCA-C-GTGGCACCGTTTGCAGCGGGAAAGTCCTTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447677 159 + 159171411 TGAGGGTT-AATTTCTCTGCACATTTGGTCCAAGGAGAAGCACCCTTTGAGATGAGAACA--TTTTTACAGCAACCAGACGGCTTCTAGGAATTCACCCTGCACAC----------ATGTGGAGGTGTG-CACA-GAG-CCCCA-T-GCAGCACCATTTGCAGCGGCAAAATCCCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565679 159 + 16356641 TGAGCATT-AATTTCTCTGCACATTTGGTCCAAGGAGAAGCACCCTTTGAGATGAGAACA--TTTTTACAGCAACCAGACGGCTTCTAGGAATTCACCCTGCACAT----------GTGTAGAGGCATC-CACG-GAG-CCCCC-T-GCAGCACCATTCGCAGCGGCAAAGTCCCAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414583 159 + 1231380 TGAGCGTT-AATTTCTCAGCACATTTGGTCCAAGGAGAAGCACCCTTTGAGATGAGAACA--TTTTTACAGCAACCAGACGGCTTCTAGGAATTCACCCTGCACAC----------ATGTGGAGGCGTG-CACG-GAG-CGCCA-G-GCAGCACCATTCGCAGCGGCAAAGTCCCAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1971809 159 + 11732439 TGAGCGTC-AATTTCTCTGCACATTTGGTCCAAGGAGAAGCAGCCTTTGAGATGAGAACA--TTTTTACAGCAACCAGACGGCTTCTAGGAATTCACCCTGCACAC----------GTGTGGAGGTGTG-CACG-GAG-CCCCA-T-GCAGCACCATTCGCAGCAGCAAAGTCCCAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22184826 165 + 22939663 T--------AACTTCTCTGCATTTTTGGCCCAAGGAAAATCGCCATTTGGGACAAGAACA--TTTTCATAGTAACCAGACAATTTCTAGGAATTCGCCCCCCAGACCTGCACAAGTGTGTGAAGATGTGTCATGTGAG-CCTCACC-ACAGAGCTGTTTGCAGTGGCAAAAGCCTAT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181126467 168 + 182113224 CAAGCAGTGA---TATCTGTGTATCTAGCCTGAGGAGAAATAGTGTTCTGGATGAGGACATTTTTTTGCAGTCGTCAAAAAGCTTCTTGCAATATCTTCTACAGCTCAGAGG-TGTGTGCTAAGAAAT--CTGG-GAA-CCTCA-CAGCAGCAATGCTAGCAGTGGTCAGATCTCAG i mm10.chr2 C 0 I 795 s dasNov3.JH567899 126425 165 + 555560 CGGGCGCT-AACTTCTTTGCATATCTGGCACAGTGAAAAACATCACTTGGGATGAGAATG--TTTTCACGGCAGCCCCACGTCCCCCAGGGCTGTACCCCAGGCAGCCTGAA-CCTGCGCGTGGAGGCA-TACG-TGC-GTCCA-G-GGAGCGAGATGTGGAACG---CGGTCCTGG i dasNov3.JH567899 I 68 C 0 e canFam3.chr24 47094340 119 + 47698779 I a score=495077.000000 s hg38.chr20_KI270871v1_alt 50310 49 + 58661 CACCTGCTTCAAGGTCCATCACTGCAAACCGGTCAGAGAAGTCGTGAGC---- s panTro5.chr20 65626509 49 + 66533130 CACCTGCTTCAAGGTCCATCACTGCAAACCGGTCAGAGAAGTCGTGAGC---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385469 49 + 62195757 CACCTGCTTCAAGGTCCATCACTGCAAACCGGTCAGAGAAGTCGTGAGC---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800078 49 - 1017659 CACCTGCTTCAAGGTCCATCACTGCAAACCGGTCAGAAAAGTAGTGAGC---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290651 49 - 110113093 CACCTGCTTCAAGGTCCATCGCTGCAAACTGGTCAGAGAAGTCGTGAGC---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008042 48 - 92844088 CA-ATGCTTCAAGGTCCATCAGTGCAAACTGGTCAGAGAAGTCGTGAGC---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657299 49 + 96509753 CACCTGCTTCAAGGTCCATCAGTGCAAACTGGTCAGAGAAGTCGTGAGC---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108188 49 - 16982598 cacctgcttcaaggtccatcagtgcgaactggtcagagaagtcgtgAGC---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956141 49 - 3785965 cacctgcttcaaggtccatcagtgcgaactggtcagagaagtcgtgAGC---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89623959 49 - 90373283 CACCTGCTTCAAGGTCCATCAGTGCGAACTGGTCAGAGATGTCGTGAGC---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507476 49 + 6149316 TACCTGCTTCAAGGTCCATCAGTGCAAACTGGTCAGAGAAGTCGTGAGC---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734913 49 - 5823884 CACCTGCTTCAAGGTCCATCAGTGCGAACTGGTCAGAGAAGTCGTGAGC---- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447836 49 + 159171411 CACCTGCTTCAAGGTCCATCAGTGCGAACTGGTCAGAGAAGTCGTGAGC---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565838 49 + 16356641 CACCTGCTTCAGGGCCCATCAGTGCGAACTGGTCAGAGAAGTCGTGAGC---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414742 49 + 1231380 CACCTGCTTCAGGGTCCATCAGTGCGAACTGGTCAGAGAATTCGTGAGC---- i cebCap1.NW_016107870v1 C 0 I 18 s aotNan1.NW_018500483v1 1971968 49 + 11732439 CACCTGCTTCAAGGTCCATCAGTGCGAACTGGTCAGAGAAGTCGTGAGC---- i aotNan1.NW_018500483v1 C 0 I 16 s otoGar3.GL873542 22184991 47 + 22939663 AATACACCTCAGTGACCGCCAGGGGGGACTGATCAGC-AAGTCCTGAC----- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 126590 36 + 555560 ----------AGGCGCCCTCGGCCCGG---GGCCAGAG----CACAGGCCCCC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I a score=172128.000000 s hg38.chr20_KI270871v1_alt 50359 38 + 58661 GCCCGACGGAGCCTAGAGGGGGACATGCAGGGAGAGGG s panTro5.chr20 65626558 38 + 66533130 GCCCGACGGAGCCTAGAGGGGGACATGCAGGGAGAGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385518 38 + 62195757 GCCCGACGGAGCCTAGAGGGGGACATGCAGGGAAAGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800127 38 - 1017659 GCCCGATGGAGCCTAGAGGGGGACATGCAGGGAGAGGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290700 38 - 110113093 GCCCGACGGAGCCTAGAGGGGGACACGCAGGGAGAGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008090 37 - 92844088 ACCCGATGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657348 37 + 96509753 ACCCGATGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108237 37 - 16982598 ACCCGACGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956190 37 - 3785965 ACCCGACGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624008 37 - 90373283 ACCCGACGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507525 37 + 6149316 ACCCGACGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734962 37 - 5823884 AGCCGACGGA-CCTAGAGGGGGACAAGCAGGGAGAGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447885 13 + 159171411 -------------------AGGGCA------GAGGAGG i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15565887 13 + 16356641 -------------------AGGGCA------GAGGAGG i saiBol1.JH378156 C 0 I 3 s otoGar3.GL873542 22185038 35 + 22939663 GCTCTGTG---CTTGCCTTGGGGCCAGCGGGGAAAGAC i otoGar3.GL873542 C 0 I 3 s dasNov3.JH567899 126626 36 + 555560 GCCCCACACG-GCAGCACAGGGACCCCGCGACAGCAG- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e aotNan1.NW_018500483v1 1972017 16 + 11732439 I e cebCap1.NW_016107870v1 414791 18 + 1231380 I e canFam3.chr24 47094340 119 + 47698779 I a score=20070.000000 s hg38.chr20_KI270871v1_alt 50397 2 + 58661 GG s panTro5.chr20 65626596 2 + 66533130 GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385556 2 + 62195757 GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800165 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290738 2 - 110113093 GG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008127 2 - 92844088 GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657385 2 + 96509753 GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108274 2 - 16982598 GG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956227 2 - 3785965 GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624045 2 - 90373283 GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507562 2 + 6149316 GG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4734999 2 - 5823884 GG i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15565903 2 + 16356641 GG i saiBol1.JH378156 I 3 C 0 s aotNan1.NW_018500483v1 1972033 2 + 11732439 GG i aotNan1.NW_018500483v1 I 16 C 0 s otoGar3.GL873542 22185076 2 + 22939663 GA i otoGar3.GL873542 I 3 C 0 s dasNov3.JH567899 126662 2 + 555560 AG i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e cebCap1.NW_016107870v1 414791 18 + 1231380 I e canFam3.chr24 47094340 119 + 47698779 I e calJac3.chr5 57447898 2 + 159171411 I a score=508613.000000 s hg38.chr20_KI270871v1_alt 50399 64 + 58661 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACATGTGAAAAGAAGTGAGTGAacaca--ca s panTro5.chr20 65626598 64 + 66533130 CCACACACACAAGGCAGGACATGGAGTGACTCCACACATGTGAAAAGAAGTGAGTGAacaca--ca i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385558 64 + 62195757 CCACACACACAAGGCAGGACACAGAGTGACTCCACACATGTGAAAAGAAGTGAGTGAacaca--ca i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800167 62 - 1017659 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACACGTGAAAAGAAGTGAGTAA--ACA--CA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290740 60 - 110113093 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACGTGTGATAAG----GAGTGAACACA--CA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008129 64 - 92844088 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACGTGTGAAAAGAAATGAGTGAACACA--CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657387 64 + 96509753 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACGTGTGAAAAGAAATGAGTGAACACA--CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108276 64 - 16982598 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACGTGTGAAAAGAAATGAGTGAACACA--CA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956229 63 - 3785965 CCACATGCACAAGGCAGGACACGGAGTGACTCCACACGTGTGAAAAGAAATGAGTGAACACA--C- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624047 64 - 90373283 CCACACGCACAAGGCAGGACACGGAGTGACTCCACATGTGTGAAAAGAAATGAGTGAACACA--CA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507564 64 + 6149316 CCACACGCACAAGGCAGGACACGGAGTGACTCCACACGTGTGAAAAGAAATGAGTGAACACA--CA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735001 64 - 5823884 CCACAAGCACAAGGCAGGACACGGAGTGACTCCACACATGTGAAAAGAAATGAGTGAACACA--CA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447900 47 + 159171411 ---------------GAGACATGGAGTGGCTCTACACCTGTGAGGAGGAGTGAGTGAACACA---- i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15565905 56 + 16356641 CCACACGCACACGGCAGGACATGGAGCGG-TCCACACGTGT---GAGGAGTCAGTGA--ACA---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414809 61 + 1231380 CCACACGCACACGGCAGGACATGGAGCGG-TCCACACATGTGAGGAGGAGTGAGTGAACACA---- i cebCap1.NW_016107870v1 I 18 C 0 s aotNan1.NW_018500483v1 1972035 64 + 11732439 CCACACACACATGGCAGGACACGGAGCGGCTCCACACGTGTGAGGAGGGGTGAGTGAACACACA-- i aotNan1.NW_018500483v1 C 0 I 206 s otoGar3.GL873542 22185078 46 + 22939663 CAGCAGGTGCATAGCAGGGCACAG------------------CAAAGAAGTGCGTGAATGCA--TG i otoGar3.GL873542 C 0 I 2 s dasNov3.JH567899 126664 46 + 555560 CGGCAGGCACACGGCGCGGCAGGGCACGGCCTCCCGGTCACGCACA-------------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I a score=143519.000000 s hg38.chr20_KI270871v1_alt 50463 23 + 58661 cag-acacacacaTGCTGTACCGT s panTro5.chr20 65626662 23 + 66533130 cag-acacacacaTGCTGTACCGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385622 23 + 62195757 cag-acacacacaTGCTGTACCGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800229 23 - 1017659 CAG-ACACACACATGCTGTACCGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290800 23 - 110113093 CAG-ACACACATGTGCTGTACCGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008193 23 - 92844088 CAG-ACACACACGTGCCGTACCGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657451 23 + 96509753 CAG-ACACACACGTGCCGTACCGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108340 23 - 16982598 CAG-ACACACACGTGCCGTACCGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956292 20 - 3785965 ----AGACACACGTGCCGTACCGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624111 23 - 90373283 CAG-ACACACATGTGCCGTACCGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507628 23 + 6149316 CAG-ACACACATGTGCCGTACCGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735065 23 - 5823884 TAG-ACATACACGTGCCATACCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447947 22 + 159171411 CAG-ACACGCA-GTGCTGCACTGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565961 22 + 16356641 CAG-ACACACA-GTGCTGCACTGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414870 22 + 1231380 CAG-ACACTCA-GTGCTGCACTGA i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22185126 20 + 22939663 CTT-GAACATGCGCACCACAC--- i otoGar3.GL873542 I 2 C 0 s dasNov3.JH567899 126710 11 + 555560 CAGCACGCACA------------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e aotNan1.NW_018500483v1 1972099 206 + 11732439 I e canFam3.chr24 47094340 119 + 47698779 I a score=295229.000000 s hg38.chr20_KI270871v1_alt 50486 28 + 58661 GGCAC-GCATGCAGAGAACGGCTCCAGGA s panTro5.chr20 65626685 28 + 66533130 GGCAC-GCATGCAGAGAACGGCTCCAGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385645 28 + 62195757 GGCAC-GCATGCAGAGAACGGCTCCAGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800252 28 - 1017659 GGGAC-GCATGCAGAGAACGGCTCCCGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290823 28 - 110113093 GGCAC-GCATACAGAGAATGGCTCCAGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008216 28 - 92844088 GGCCC-GCATGCAGAGAACAGGTCCAGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657474 28 + 96509753 GGCCC-GCATGCAGAGAACAGGTCCAGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108363 28 - 16982598 GGCCC-GCATGCAGAGAACAGGTCCAGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956312 28 - 3785965 GGCCC-GCATGCAGAGAACAGGTCCAGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624134 28 - 90373283 GGCCC-ACATGCAGAGAACAGCTCCAGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507651 28 + 6149316 AGCCC-GCATGCAGAGAACAGGTCCAGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735088 28 - 5823884 GGCAC-GCATGCAGAGAACAGCTCCAGGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447969 28 + 159171411 GGCAC-ACATGCAGATAATGGCTCCAGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15565983 28 + 16356641 GGCAC-GCATGCGGAGAACGGCCCCAGGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 414892 28 + 1231380 GGCAC-GCATGCAGAGAACGGCTCCAGGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1972305 28 + 11732439 GGCAC-GCATGCAGAGAACAGCTCCAGGA i aotNan1.NW_018500483v1 I 206 I 284 s otoGar3.GL873542 22185146 27 + 22939663 AGCACAATAAGCAGAGGACAGAT--AGGA i otoGar3.GL873542 C 0 I 2 s dasNov3.JH567899 126721 28 + 555560 GCCGC-GCTTGCAAGGAACAGCCCTGGGA i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I a score=171135.000000 s hg38.chr20_KI270871v1_alt 50514 19 + 58661 -GATGGGCCATGGCTGACCC------ s panTro5.chr20 65626713 19 + 66533130 -GAGGGGCCATGGCTGACCC------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385673 19 + 62195757 -GAGGGGCCATGGCTGACCC------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800280 19 - 1017659 -GAGGGGCCATGGCTGACCT------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290851 19 - 110113093 -GAGAGGCCATGGCTGACCC------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008244 19 - 92844088 -GAGGGGCCATGGCTGACCC------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657502 19 + 96509753 -GAGGGGCCATGGCTGACCC------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108391 19 - 16982598 -GAGGGGCCATGGCTGACCC------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956340 19 - 3785965 -GAGGGGCCATGGCTGACCC------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624162 19 - 90373283 -GAGGGGCCATGGCTGACCC------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507679 19 + 6149316 -GAGGGGCCATGGCTGACCC------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735116 19 - 5823884 -GAGGGGCCATGGCTGACCC------ i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57447997 19 + 159171411 -GAGGGTCCATGGCGGACCT------ i calJac3.chr5 C 0 I 409 s saiBol1.JH378156 15566011 19 + 16356641 -GAGGCACCGTGGCGGACCC------ i saiBol1.JH378156 C 0 I 37 s cebCap1.NW_016107870v1 414920 19 + 1231380 -GAGGGTCCGTGGCGGACCC------ i cebCap1.NW_016107870v1 C 0 I 38 s otoGar3.GL873542 22185175 19 + 22939663 -CAGGAGCCAGGGCAGAATC------ i otoGar3.GL873542 I 2 C 0 s dasNov3.JH567899 126749 26 + 555560 GGGGGGGAAAAGCCAGAGCCGCAGAC i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e aotNan1.NW_018500483v1 1972333 284 + 11732439 I e canFam3.chr24 47094340 119 + 47698779 I a score=690506.000000 s hg38.chr20_KI270871v1_alt 50533 129 + 58661 GGTACGGAGATGGGGCAGCGCAGAGGGGGCAAATCATACTGGCTGGACATCATTTTATATATTTCAGGGT-TTCCGT----GGGTGTCTTT----------TC-tgt--gtgtg------tgtgtgtgtgtgtgtgt--gtgtgtgCAC----------------ATGTCA s panTro5.chr20 65626732 119 + 66533130 GGTATGGAGATGGGGCAGCGCAGAGGGGGCAAATCATACTGGCTGGACATCATTTTATATATTTCAGGGT-TTCCAt----gggtgtcttt----------tc-tgt--gtgtg------tgtgtgtgtgtgtg------------CAC----------------ATGTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385692 121 + 62195757 GGTATGGAGATGGGGCAGCGCAGAGGGGGCAAATCATACTGGCTGGACATCATTTTATATATTTTAGGGT-TTCCgt----gggtgtcttt----------tc-tgt--gtgtg------tgtgtgtgtgtgtg----------tgCAC----------------ATGTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800299 115 - 1017659 GGTACAGAGATGGGGCAGCGCAGAGGGGGCAAATCATACTGGCTGGACATCATTTTATATATTCCAGCGT-TTCCgt----gggtgtcttt----------tc-tgt--gtgtg------tgtgtgtgtg----------------CAC----------------ATGTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109290870 135 - 110113093 AGTGCTGAGATGGGGCAGTGCAGAGGGGGCAAATCATACTGGCTGGACATCATTTTATATATTCCAGGGT-TTCCGT----GGGTGTCTTTTCTCTCTCTCTC-tgt--gtgtg------tgtgtgtgtgtgtg------tgtgtgtgC----------------ATGCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008263 107 - 92844088 AGTGAGGAGACAGGGCAGCACGGAGGGGGCAAATCATTCGGGCTGGACGTCATTTTATATATTCCAGGGT-TTCCGT----GGGTGTCTCT----------TC-TGA--GTGTG------TGTGTGTGT----------------------------------------CA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657521 107 + 96509753 AGTGAGGAGACAGGGCAGCACGGAGGGGGCAAATCATTCGGGCTGGACGTCATTTTATATATTCCAGGGT-TTCCGT----GGGTGTCTCT----------TC-TGA--GTGTG------TGTGTGTGT----------------------------------------CA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108410 107 - 16982598 AGTGAGGAGACAGGGCAGCACAGAGAGGGCAAATCATTCGCGCTGGACGTCATTTTATATATTCCAGGGT-TTCCGT----GGGTGTCTCT----------TC-TGA--GTGTG------TGCGTGTGT----------------------------------------CA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956359 107 - 3785965 AGTGAGGAGACAGGGCAGCACAGAGGGGGCAAATCATTTGGGCTGGACGTCATTTTATATATTCCAGGGT-TTCCGT----GGGTGTCTCT----------TC-TGA--GTGTG------TGTGTGTGT----------------------------------------CA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624181 105 - 90373283 AGTGAGGAGACAGCGCAGCACAGAGGGGGCAAATCATTCAGGCTGGACGTCATTTTATATATTCCAGGGT-TTCCGT----GGGTGTCTTT----------TC-TGA----GTG------TGTGTGTGT----------------------------------------CA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507698 109 + 6149316 AGTGAGGAGACAGGGCAGCACAGAGCGGGCAAATCATTCGGGCTGGATGTCATTTTATATATTCCAGGGT-TTCCgt----gggtgtctct----------tc-tgagtgtgtg------tgtgtgtgt----------------------------------------CA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735135 112 - 5823884 AGTGAGGAGACAGGGCAGCACAGAG-GGGCAAATCATTCTGGCTGGATGTCATTTTATATATTCCAGGGT-TTCCAT----GGGTATCTTT----------TC-TGA--GTGTGTGTGGCTGTGTGTGT----------------------------------------CA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448425 129 + 159171411 --GGCAGAGACGGGGCAGTGCATAGGGAGCAAATCACCCTGGCTGGATGTCATTTTATACAGTCCAGGGT-TCCCGT----GGATGTCTTT----------TC-tgt--gtgtg------tgtgtgtgtgtgtgtgtgtgcgcgcgcgc----------------gtgtCA i calJac3.chr5 I 409 C 0 s saiBol1.JH378156 15566067 146 + 16356641 AGGGCGGAGACACGGCCACAAGTAGGAAGCAAATCACCCTGGCTGGATGTCATTTTATACAGTCCAGGGT-TCCAA-----GGATATCTTT----------TC-tgt--gtgtg------tgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgtgtgcctgggtgtgtCA i saiBol1.JH378156 I 37 C 0 s cebCap1.NW_016107870v1 414977 119 + 1231380 AGGGCGGAGACACAGCAGCGCAGAGGAAGCAAATCACCCTGGCTGGATGTCATTTTATACAGTCCGGGGC-TCCCAT----GGATGTCTTT----------TC-tgt--gtgtg------tgcgtgtgtgcctgtgc----------------------------atgtca i cebCap1.NW_016107870v1 I 38 C 0 s otoGar3.GL873542 22185194 113 + 22939663 TGAGGAGAGAGTGGGCAGAGTGTTGGAGTCCAGT-GTTCTCACCAT-CATTATTTTATATATTTCAGGAT-TTTCCCATTGGTGTGTTTTT----------TC-CAT--GCATG------TGCATCTGC------------------------------------ATTTCA i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 126775 85 + 555560 AACAAGGGAAAGCCGGGGTGCA-AGGGGGCG--------TGGCCCGA-------------AACCCGGGGCATCCCGC----GGGTCTCCAT----------ACACGC--CAGTG------AATGTTCCA------------------------------------------ i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e aotNan1.NW_018500483v1 1972333 284 + 11732439 I e canFam3.chr24 47094340 119 + 47698779 I a score=496542.000000 s hg38.chr20_KI270871v1_alt 50662 47 + 58661 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- s panTro5.chr20 65626851 47 + 66533130 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385813 47 + 62195757 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800414 47 - 1017659 TGTGAATTTG--ACCTATTCTGGAAGAACGA-G-TAAGAAGGGGGTCATCt---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291005 47 - 110113093 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008370 47 - 92844088 CGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657628 47 + 96509753 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108517 47 - 16982598 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956466 47 - 3785965 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGAGGGTCATCt---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624286 47 - 90373283 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507807 47 + 6149316 TGTGAATTTG--ACCTATTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735247 47 - 5823884 TGTGAACTTG--ACCTGTTCTGGAAGAACGG-G-TAAGAAGGGGGTCATCt---- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448554 47 + 159171411 TGTGAATCTA--ACCTATTCTGGAAGAACAG-G-TAAGAAGGGGGTCATCT---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566213 47 + 16356641 TGTGAATCTG--ATCTATTCTGGAAGAACAG-A-TAAGAAGGGGGTCATCT---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415096 47 + 1231380 tgtgAATCTG--ACCTATTCTGGAAGAACAG-T-TAAGAAGAGGGTCATCT---- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1972617 47 + 11732439 TGTGAATCTG--ACCTAATCTGGAAGAACAG-A-TAAGAAGGGGGTcatct---- i aotNan1.NW_018500483v1 I 284 I 308 s otoGar3.GL873542 22185307 25 + 22939663 --------------TTCTTCTGAAAGGTTGG-GATAAGAA--------------- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 126860 54 + 555560 CGTGAACTTGGCATCTTTTCCGGAAGGAGGGAG-GAAGGAAAGGGGCGGCGGGCT i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I a score=316814.000000 s hg38.chr20_KI270871v1_alt 50709 54 + 58661 cccagctactcaggaggtcaaggcaggaggatcgctcagg---cccaggagttctgg s panTro5.chr20 65626898 54 + 66533130 cccagctactcaggaggtcaaggcaggaggatcgctcagg---cccaggagttccgg i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385860 54 + 62195757 cccagctactcaggaggtcaaggcaggaggatcgctcagg---cccaggagttccgg i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800461 54 - 1017659 ctcagctactcaggaggtcaaggcaggaggatcgctcagg---cccaggagttctgg i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291052 54 - 110113093 cccagctactcaggaggtcaaggcaggaggaccgctcagg---cccaggagttccag i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008417 53 - 92844088 cccagctactcaggaggtcaaggcaagagggtcgctcaag----ccaggagctccag i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657675 53 + 96509753 cccagctactcaggaggtcaaggcaagagggtcgctcaag----ccaggagctccag i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108564 53 - 16982598 cccagctactcaggaggtcaaggcaagagggtcgctcaag----ccaggacctccgg i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956513 53 - 3785965 cccagctactcaggaggtcaaggcaagagggtcgctcaag----ccaggagctccgg i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624333 53 - 90373283 ccccgctactcaggaggtcaaggcaagaggatcgctcaaa----ccaggagctccgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507854 53 + 6149316 cccagctactcaggaggtcaaggcaagagggtcgctcaag----ccaggagctccgg i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735294 53 - 5823884 cccagctactcaggagatcaaggcaagaggatcgctcaag----ccaggagctccgg i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448601 40 + 159171411 CCCAGCT--------------ggcaggaggctctcgctag---cccaggacttccca i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566260 40 + 16356641 CCCAGCT--------------GTcaggaggctcgagctag---cccaggacttccca i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415143 40 + 1231380 CCCAGCT--------------ggcaggaggctcgtgctag---cccaggacttccca i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22185332 29 + 22939663 -----------------------CAGGAGGTGCAGCTCCG----CCAGTAGCCCTG- i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 126914 41 + 555560 CCCTGCTGCT-----GGTCTAAGCAA----CTCTCTGTGGTGGTCCAGGA------- i dasNov3.JH567899 C 0 C 0 e mm10.chr2 181126635 795 + 182113224 I e aotNan1.NW_018500483v1 1972664 308 + 11732439 I e canFam3.chr24 47094340 119 + 47698779 I a score=503694.000000 s hg38.chr20_KI270871v1_alt 50763 52 + 58661 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggccacagagcga s panTro5.chr20 65626952 52 + 66533130 gctgcagtcagctac---------aat-----cacaccactgcactcagcctgggccacagagcaa i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385914 52 + 62195757 gctgcagtcagctac---------aat-----cacaccactgcactcagcctgggccacagagcaa i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800515 52 - 1017659 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggccacagagcga i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291106 52 - 110113093 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggccacagagtga i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008470 52 - 92844088 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggccacagagcga i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657728 52 + 96509753 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggccacagagcga i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108617 52 - 16982598 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggccacagagcga i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956566 52 - 3785965 gctacagtgagctac---------gat-----cacaccactgcactcagcctgggccacagagcga i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624386 52 - 90373283 gctgcagtgagctac---------gat-----cacaccactgcactcagcctgggccacagagcga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507907 52 + 6149316 gctgcagtgagctac---------gat-----cacaccactgcactcagcctgggccacagagtga i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735347 52 - 5823884 gctgcagtgagctac---------aat-----cacaccactgcactcagcctgggtcacagagcga i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448641 52 + 159171411 gctgcaatgagctat---------gct-----cacagcacggcattcagcctcggccacagagtga i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566300 66 + 16356641 gctgcagtgagctatgggcactcagctacgggcacagcacggcactcagcctgggccacagagtga i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415183 52 + 1231380 gctgcagtgagctat---------gct-----cacaccacggcactcagcctgggccacacagtga i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1972972 52 + 11732439 gctacagtgagctat---------gct-----cacaccacggcactcagcctgggccacagagtga i aotNan1.NW_018500483v1 I 308 C 0 s otoGar3.GL873542 22185361 25 + 22939663 --------------------------------------ACTACACC---CCTTGCCCACAGAGGGA i otoGar3.GL873542 C 0 C 0 s dasNov3.JH567899 126955 47 + 555560 -----AGGGGACCCC---------AAT-----TCCAGCCCCACGCGGGGTGTGAGCCCCAAAACGC i dasNov3.JH567899 C 0 I 250 e mm10.chr2 181126635 795 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I a score=2520573.000000 s hg38.chr20_KI270871v1_alt 50815 315 + 58661 gac--ccccacacttaaaataaataaataatagaaTACGGACATCAGGCCCTGCCTGGCCTTATCTGGTCTACAAAGGGGACTCCAGGCTGCCTCCTGCTCC-GTCCTGGGGTGGCGCTCCCC--GATATCCCTGCCTCCCTGACCACCCTACTCCAGGAGAAGGAAGCCCAGCCGGCCGAGTGCTGCTGCC-CTTCCCCAGGGCTCAGCCTCCATGACA----AACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTGAGTCCCA-----GCTTAGAACCCTGCACCCGCACACAGGGGCAGAAACACAT--TAACCAGGCGCCTCCGG s panTro5.chr20 65627004 319 + 66533130 gac--ccccacacttaaaataaataaataatagaaTACGGACATCAGGCCCTGCCTGGCCCTATCTGGTCTACAAAGGGGACTCCAGGCTGCCTCCTGCTCC-GTCCTGGGGTGGCACTCCCC--GATATCCCTGCCTCCCTGACCACCCTTCTCCAGGAGAAGGAAGCCCAGCCGGCCGAGTGCTGCTGCC-CTTCCCCAGGGCTCAGCCTCCATGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTGAGTCCCA-----GCTTAGAACCCTGCACCCGCACACAGGGGCAGAAACACAT--TAACCAGGCGCCTCCGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61385966 319 + 62195757 gac--ccccacacttaaaataaataaataatagaaTACGGACATCAGGCCCTGCCTGGCCCTATCTGGTCTACAAAGGGGACTCCAGGCTGCCTCCTGCTCC-GTCCTGGGGTGGCGCTCCCC--GATATCCCTGCCTCCCTGACCACCCTTCTCCAGGAGAAGGAAGCCCAGCCGGCCGAGTGCTGCTGCC-CTTCCCCAGGGCTCAGCCTCCATGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTGAGTCCCA-----GCTTAGAACCCTGCACCCGCACACAGGGGCAGAAACACAT--TAACCAGGCGCCTCCGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800567 318 - 1017659 gac--ccccacacttaaaataaataaataatagaaTACGGACATCAGGCCCTGCCTGGCCCTATCTGGTCTACAAAGGGGACTCCAGGCTGCCTCCTGCTCC-GTCCTGGGGTGGCGC-CCCC--GATATCCCTGCCTCCCTGACCGCCCTCCTCCAGGAGAAGGAAGCCCAGCCGTTCGAGTGCTGCTGCC-CTTCCCCTGGGCTCAGCCTCCATGACAGACAAACTTGAAAGTCCCACACACGTGCCCTCTGCAC-----CCTGAGTCCCA-----GCTTAGAACCGTGCACCCGCACACAGGGGCAGAAACACAT--TAACCAGGCGCCTCCGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291158 315 - 110113093 gac--ccccacactta----aaataaataacagaaTACGCACATCAGGCCCTGCCTGCCCCTGTCTGGTCTACAAAGGGGACTCCAGGCTGCCTCCTGCTCC-GTCCTGGGGTGGCGCTCCCC--GATATCCCTGCTTCCCTGACCGCCCTCCTCCAGGAGAAGGAAGCCCAGCTGGCCGAGTGCTGCTGCC-CTTCCCCCGGGCTCAGCCTCCAAGACAGATAAACTTTAAAGTCCCACACATGTGCCCTCTGCAC-----CCTGAGTCCCA-----GCTTAGAACCCTGCACCCGCACACAGGGGCAGAAACACAT--TAACCAGGTGCCTCCGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008522 315 - 92844088 gac--ccctactctta----aaataaagaacagaaTACAGACATCAGGCCCTGCCTGGCCCTATCTGGTCTATAAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGGTGACGCTACCC--AATATCCCTGCTTCCCTGACCGCCCTCCTCCAGGAGAAGGAAGCCCAGTCGGCCGAGTGTTGCTGCTGCTTCCCTGGGGCTCAGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTAAGTCCCA-----GTGTAGAGCCCTACA-CCACACACAGAGGCAGAGACACAT--TAACCAGGCGCCCACGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95657780 315 + 96509753 gac--ccctactctta----aaataaagaacagaaTACAGACATCAGGCCCTGCCTGGCCCTATCTGGTCTATAAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGGTGACGCTACCC--AATATCCCTGCTTCCCTGACCGCCCTCCTCCAGGAGAAGGAAGCCCAGTCAGCCGAGTGTTGCTGCTGCTTCCCTGGGGCTCAGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTAAGTCCCA-----GTGTAGAGCCCTACA-CCACACACAGAGGCAGAGACACAT--TAACCAGGCGCCCACGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108669 313 - 16982598 gac--ccctactctta----aaataaagaacagaaTACAGACATCAGGCCCTGCCTGGCCCTATCTGGTCTATAAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGATGACGCTACCC--AATAGCCCTGCTTCCCTGACCGCCCTCCTCCAGGAGAAGGAAGCCCAGTCGGCCGAGTGTTGCTGCTGCTTCCCTGGGGCTCAGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTAAGTCCCA-----GTGTAGAGCCCTACA-CCACACACAGGGGC--AGACACAT--TAACCAGGCGCCCACGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956618 290 - 3785965 gac--ccctactctta----aagtaaataacagaaTACAGACATCAGGCCCTGCCTGGCCCTATCTGGTCTACAAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGGTAACGCTACCC--AATATCCCTGCTTCCCTGACCGCCCTCCTCCGGGAGAAGGAAGCCCAGTCGGCCGAG-------------------------AGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTGAGTCCCA-----GTGTAGAGCCCTACA-CCGCACACAGGGGCAGAGACCCAT--TAACCAGGTGCCCGCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624438 290 - 90373283 gac--ccctactctta----aaataaataacagaaTACAGACATCAGGCCCTGCCTGGCCCTATCTGGTCTACGAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGGTGACGCTACCC--AATATCCCTGCTTCCCTGACCACCCTCCTCCAGGAGAAGGAAGCCCAGTCGGCCGAG-------------------------AGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGTAC-----CCTGAGTCCCA-----GTGTAGAGCCCTACA-CCACACACAGGGGCAGAGACACAT--TAACCAGGCGCCCGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5507959 290 + 6149316 gac--ccctactctta----aaataaataacagaaTACAGACATCAGGCCCTGCCTGGCCCTATCTGGTCTACAAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGGTGACGCTACCC--AATATCCCTGCTTCCCTGACCGCCCTCCTCCGGGAGAAGGAAGCCCAGTCGGCCGAG-------------------------AGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCCTCTGCAC-----CCTGAGTCCCA-----GTGTAGAGCGCTACA-CCGCACACAGGGGCAGAGACCCGT--TAACCAGGCGCCCGCGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735399 315 - 5823884 gac--ccctactctta----aaataaataacagaaTACAGACATCAGGCCCTGCCTGGCCCTACCTGGTCTACAAAGGGGACTCCAGTCTGCCTCCTGCTCT-GTCCTGGGGTGACGCTACCC--AATATCCCTGCTTCCCTGACCGCCCTCCTCCAGGGGAAGGAAGCCCAGTCGGCCTAGTGTTGCTGCCTCTTCCCTGGGGCTCAGCCTCCACGACAGACAAACTTTAAAGTCCCACACACGTGCCTTCTGCGC-----CCTGAGTCCCA-----GTTTAGAGCCCTACA-CTGCACACAGGGGCAGAGACACAT--TAACCAGGCGCCCGCGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448693 290 + 159171411 ggc--gcctgctctcaaaataaataaataacagaaTTCAGACATCAGGCCCTGCCCAGCCCCATCTGGTCTACAAAGGGGACTCCAGGCCACCTCCTGCTCC-AACTTGGGGCGACACTCTGCTGGATG---------TCCTGACCACCCTCCCCCAGG-GAAGCAACCCCAGCTGGCTGAGCGCTACTGCC-CTTCCCCTGGCCTCAGCCTCCACGATAGACAAACTTTAAAGT-CCACGGACATGCCCTCTGCAC-----CCTGAGCCCCA-----GCTCAGA--------------------GCCAGAAACACAT--TAACCAAGCACTCGCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566366 311 + 16356641 ggcatgcctgctctcagagtaaataaataacacaaTTCAGACATCAGGCCCTGCCTGGCACCATCCGGTCTGCAAAAGGGACTCCAGGCCACCTCCTGCTCC-AACCTGGGGCAACGCTCTGC--AATG--------CCCCTAACCACCCTCCTCCAGG-GAAGCGACCCCAGCCGGCTGATCACTACTGCC-CTTCCCCTGGCCTCAGTCTCCACGATGGACAAACTTGAAAGT-CCAGGCACATGCCCTCTGCAC-----CCTGAGCCCCA-----GCTCAGAGCCCTGCACCCGCACACAGGGCCAGAAACACAT--TAAGCAGGCACTCGAAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415235 309 + 1231380 ggc--gcctgctctcaaaataaataaataacagaaTTCAGACATCAGGTCCTGCCCGGCCCCATCTGATCTACAAAGGGAACTCCAGGCCACCTCCTGCTCC-AACTTGGGGCAACGCTCTGC--GATG--------CCCCTGACCACCCTCCTCCATG-GAAGCAACCGCAGCCGGCTGAGCGCTACTGCC-CTTCCCCTGGCCTCAGCCTCCACGATGGACAAACTTTAAAGT-CCAGGCATATGCCCTCTGCAC-----CCTGAGCTCCG-----GCTCAGAGCCCCGCACCCTCACATAGGGCCAGAAACACAT--TAACCAGGCACCCGCAG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973024 307 + 11732439 ggc--gcctgctctcaaaataaataaataacagaaTACGGACATCAGGCCCTGCCCGGCCCCATCTGGTCTACAAAGGGGACTCCAGGCCACCTCCTGCTCC-AACCTAGGGCGACGATCTGC--GCTG--------ACCCTGACCACACTCCTCCAGG-GAAGCGCCCCCAGCCGGCTGAGTGC-ACTGCC-CTTCCCCTGGCCTCAGCCTCCACGATGGACAAACTTTGAAGT-CCA-GCACGTGCCCTCTGCAC-----CCTGAGCCCCA-----GCTCAGAGCCCTGCACCCGCACACAGGCCCAGAAACACAT--TAACCAGGCACCCGCAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22185386 207 + 22939663 GGC--CCC------------------------------------------------------------------------------ACCTGCCTCCTACTCCTGTCCTGCAGAAGCTCT------GGTACTCCTCCTCCCCAG----CTTCCCTCCA------------TCTGTTGGCCCAGCACAGGTG-----------------GGCCTC----ATGGACGGAGTACTGAGC-CCACACACAGGCCCAGCGCACCTAATCCAGGCTCCCATAAGGGCTCAGAACC------TCTCACACAGGAGCAGAAATGAGTGCTCACCACGGCTCTCCAG i otoGar3.GL873542 C 0 C 0 e dasNov3.JH567899 127002 250 + 555560 I e mm10.chr2 181126635 795 + 182113224 I e canFam3.chr24 47094340 119 + 47698779 I a score=36903.000000 s hg38.chr20_KI270871v1_alt 51130 4 + 58661 CCTC s panTro5.chr20 65627323 4 + 66533130 CCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386285 4 + 62195757 CCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800885 4 - 1017659 CCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291473 4 - 110113093 CCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008837 4 - 92844088 CCTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95658095 4 + 96509753 CCTC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108982 4 - 16982598 CCTC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956908 4 - 3785965 CCTC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624728 4 - 90373283 CCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5508249 4 + 6149316 CCTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735714 4 - 5823884 CCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448983 4 + 159171411 CCTC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566677 3 + 16356641 CCT- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415544 4 + 1231380 CCTC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973331 3 + 11732439 CCC- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22185593 4 + 22939663 CCCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181127430 4 + 182113224 CCTT i mm10.chr2 I 795 C 0 e dasNov3.JH567899 127002 250 + 555560 I e canFam3.chr24 47094340 119 + 47698779 I a score=13073.000000 s hg38.chr20_KI270871v1_alt 51134 1 + 58661 C s panTro5.chr20 65627327 1 + 66533130 C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386289 1 + 62195757 C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800889 1 - 1017659 C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291477 1 - 110113093 C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008841 1 - 92844088 C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95658099 1 + 96509753 C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108986 1 - 16982598 C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956912 1 - 3785965 C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89624732 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5508253 1 + 6149316 C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4735718 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448987 1 + 159171411 C i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566680 1 + 16356641 C i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415548 1 + 1231380 C i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22185597 1 + 22939663 T i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181127434 1 + 182113224 C i mm10.chr2 C 0 C 0 s dasNov3.JH567899 127252 1 + 555560 C i dasNov3.JH567899 I 250 C 0 e aotNan1.NW_018500483v1 1973334 0 + 11732439 C e canFam3.chr24 47094340 119 + 47698779 I a score=1279978.000000 s hg38.chr20_KI270871v1_alt 51135 130 + 58661 CGCC--CACAGC----CCCTCAGGGCAGACATCCC---AA------CCTCTCATCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACAGGGAGCCAGGCAGAAACTGGCCTTTTGCTCCCACTCACCCTTCTCATGTTTTTT- s panTro5.chr20 65627328 130 + 66533130 CGCC--CACAGC----CCCTCAGGGCAGACATCCC---AA------CCTCTCATCCCT-----------G-----CCCGAGGCTTCTGCCCACCTCCTCCCAGGACAGGGAGCCAGGCAGAAACTGGCCTTTTGCTCCCACTCACCCTTCTCATGTTTTTT- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386290 130 + 62195757 CGCC--CACAGC----CCCTCAGGGCAGACATCCC---AA------CCTCTCATCCCT-----------G-----CCCGAGGCTTCTGCCCACCTCCTCCCAGGACAGGGAGCCAGGCAGAAACTGGCCTTTTGCTCCCACTCACCCTTCTCATGTTTTTT- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 800890 129 - 1017659 CGCC--CACAG-----CCCTCAGGGCAGACATCCC---AA------CCTCTCATCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACGGGGAGCCAGGCAGAAACTGGCCTTTTGCTCCCACTCACCCTTCCCATGTTTTTT- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291478 130 - 110113093 CGCC--CACAGC----CCCTCAGGGCAGGCATCCC---AA------CCTCTCATCCCT-----------G-----CCCAAGGCTTCTCCCCACCTCCTCCCAGGACGGGGAGCCAGGCAGAAACTGGCCTTTGGCTCCCACTCACCCTTCCCATGTTTTTT- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008842 129 - 92844088 CGCC--CACAG-----CCCTCGGGGCAGGCATCCC---AG------CCTCTCACCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACAGGGAGTCAGGGAGAAACTGGCCCTTTGCTCCCACTCACGCTTCCCACGTGTTTT- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95658100 129 + 96509753 CGCC--CACAG-----CCCTCGGGGCAGGCATCCC---AG------CCTCTCACCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACAGGGAGTCAGGGAGAAACTGGCCCTTTGCTCCCACTCACGCTTCCCACGTGTTTT- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16108987 129 - 16982598 CGCC--CACAG-----CCCTCGGGGCAGGCATCCC---AG------CCTCTCACCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACAGGGAGTCAGGGAGAAACTGGCCCTTTGCTCCCACTCACGCTTCCCACGTGTTTT- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2956913 129 - 3785965 CGCC--CACAG-----CCCTCGGGGCAGGCATCCC---AG------CCTCTCACCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACAGGGAGTCAGGGAGAAACTGGCCCTTTGCTCCCACTCACGCTTCCCACGTGTTTT- i cerAty1.NW_012001373v1 C 0 I 66 s chlSab2.chr2 89624733 129 - 90373283 CGCC--CACAG-----CCCTCGGGGCAGGCATCCC---AG------CCTCTCGTCCCT-----------G-----CCCGAGGCTTCTCTCCACCTCCTCCCAGGACAGGCAGCCAGCGAGAAACTGGCCCTTTGCTCCCACTCACCCTTCCCATGTGTTTT- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5508254 128 + 6149316 CGCC--CACAG-----CCCTC-GGGCAGGCATCCC---AG------CCTCTCACCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCTCCCAGGACAGGGAGTCAGGGAGAAACTGGCCCTTTGCTCCCACTCACCCTTCCCACGTGTTTT- i manLeu1.NW_012104365v1 C 0 I 5925 s colAng1.NW_012114444v1 4735719 129 - 5823884 CGCC--CACAG-----CCCCTGGGGCAGGCATCCC---AA------CCTCTCATCCCT-----------G-----CCCGAGGCTTCTCCCCACCTCCCCCCAGGACGGGGATCCAGGGAGAAACTGGCCTTTTGCTCCCACTCACCCTTCCCATGTGTTTT- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57448988 130 + 159171411 CACC--CACAGG----CCCTCAGAGCAGGGACCCC---AA------CCTTTCATCCCT-----------G-----CCCAAAGCTTCTCCCCACCTCCTCCCAGGACAGGGAGCCACCGAGAACCTGGCCTTCTGCTCCCACTCACCCTTCTCTTGTGTTTT- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566681 129 + 16356641 CACC--CACAGC----CCCTCGGAGCAGGGACCCC---AA------CCTCTCATCCCT-----------G-----CCCGAAGCTTCTCCCCACCTCCTCCCAGGACGGGGAGCCAGGGAGAACCTGG-CTTCTGCTCCCACTCACCCTTCCCTTGTGTTTT- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415549 130 + 1231380 CACC--CACAGC----CCCTCGGAGCAGGGACCCC---AA------CCTCTCATCCCT-----------G-----CCCGAAGCTTCTCCCCACTTCCTCCCAGGACAGGGAGCCACAGAGAACCTGGCCTTCTGCTCCTACTCACCCTTCTCCTGTGTTTT- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973334 118 + 11732439 ------------------CTCGGAGCAGGGACCCC---AA------CCTCTCATCCCT-----------G-----CCCGAAGCTTCTCCCCACCTCCTCCCAGGACGGGGAGCCACGGAGAACCTGGCCTTCCGCTCCCACTCACCCTTCTCTTGTGTTTT- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22185598 96 + 22939663 CCCG--C---------TATTCA----AAACTTCCC---AC------CCTGTCCTTGCT-----------T-----CCC-AAGCTTCTCCAGTCCT--------------------GGGAGAGACCAGCCT----CTCCTGCTCACTCTTCCGATGTGTTTT- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181127435 119 + 182113224 CATCAACACAGCT---TCTTCTGCACAGGCTTCCCAAAAA------TGTTTCATTTCT-----------A-----CCT---------------TGCTTCCCAAACCTGGGGCCCCTGAAGAAGTTGTCCCCTCCCTCGTACTC-CCCAGCCAGTGTCTTT-- i mm10.chr2 C 0 C 0 s canFam3.chr24 47094459 122 + 47698779 CACC--TGCAGC----CCCGCAGGCTGGGTCCTCC---CG------CTTC-CACCCCTGCTTCTGCCGAG-----CCCGGAGCCTTGCACCACCTCCCCCCAGGCCTGGGGTCCCAGGAGGAACTGGCCTT-------------CCTCTATCTTGG------ i canFam3.chr24 I 119 C 0 s dasNov3.JH567899 127253 144 + 555560 CGCC--CACAGCTGCCACCACTGGACAGGCTTTCT---AGAAAGCTCCGCTTCTTCCT-----------GGGCTTCCCAAAGCTTTGCACTGTCACCCCCAA--ACCTGGATCCTGGGAGAGACTTGCCTCTTCCTCCCATAAACCCTGTAAATCCTTTCTT i dasNov3.JH567899 C 0 C 0 a score=2079915.000000 s hg38.chr20_KI270871v1_alt 51265 269 + 58661 CCAAACCTAAACAGAAAAGC--AAGCTCGAAAGTTCTCAGGTGTTCAGCTTACGT-CACGGGTAAGGGCTCC---ATGGGGAGGAACAA--A-ACTAGAGAAG--ACCTGGAGGATGAGGC------GGGGGCAGACAGAGG-CAGCAGATGCCTCCACGCCACAGAT-ACAGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCTGGGCAGCCTG--GAGCCCAGCCCCTGCCACA--CCCCCAGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGGGAT-----GG-GAGACT s panTro5.chr20 65627458 269 + 66533130 CCAAACCTAAACAGAAAAGC--AAGCTCGAAAGTTCTCAGGTATTCAGCTTAGGT-CACGGGTAAGGGCTCC---ATGGGGAGAAACAA--A-ACTAGAGAAG--ACCTGGAGGATGAGGC------GGGGGCAGACAGAGG-CAGCAGATGCCTCCACGCCACAGAT-ACAGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCTGGGCAGCCTG--GAGCCCAGCCCCTGCCACA--CCCCCAGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGGGAT-----GG-GAGACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386420 269 + 62195757 CCAAACCTAAACAGAAAAGC--AAGCTCGAAAGTTCTCAGGTATTCAGCTTAGGT-CACGGGTAAGGGCTCC---ATGGGGAGAAACAA--A-ACTAGAGAAG--ACCTGGAGGATGAGGC------GGGGGCAGACAGAGG-CAGCAGATGCCTCCACGCCACAGAT-ACAGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCTGGGCAGCCTG--GAGCCCAGCCCCTGCCACA--CCCCCAGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGGGAT-----GG-GAGACT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 801019 268 - 1017659 CCAAACCTAAACAGAAAAGC--AAGCTCGAAAGTTCTCAGGTATTCAGCTTAGGT-CACGGGTAAGGGCTCC---ATGGGGAGGAACAG--A-ACTAGAGAAG--ACCTGGAGGATGAGGC------GGGGGCAGACAGAGG-CAGCAGATGCCTCCATGCCACAGAT-ACAGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCTGGGCAGCCTG--GAGCCCAGCCCCTGCCACA---CCCCAGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGGGAT-----GG-GAGACT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291608 269 - 110113093 CCAAACCTAAACAGAAAACC--AAGCTCGAAAGTTCTCAGGTATTCAGCTTAGGTCCAAGGGTAAGGGTTCC---ATGGGGAGGAACAG--A-A-TAGAGAAG--ACCTGGAGGACAAGGC------GGGGGCAGGCAGAGG-CAGCAGACGCCTCCATGCCACAGAT-ACAGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCCAGGCAGCCTG--GAGCCCAGCCCCTGCCACA--CCCCCAGGAACTGCCCGTCCGCCCCCACTGAGATGATTCAGGGAT-----GG-GAGGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92008971 269 - 92844088 CCAAGACTAAACGGAAAAGCAGAAGCTCGAAAGGTCTCAGGTTTTCAGCTGAGGT-CAAGGGTAAGTGCTCC---GTGGGGAGGAACAG--A-ACT-GAGAAG--ACCTGGAGGACGAGAC------GGGGGCAGGCAGAGG-CAGCAGCCGCCTCCATGCCACAGAT-ACGGAGGAAGAATCCAGAAGGA-GGCTCCTTGCAGGCCGGGCAGCCTG--GAGCCCAGCCCC-GCCACA--CCCCCCGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGAGAC-----GG-GAGACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95658229 269 + 96509753 CCAAGACTAAACGGAAAAGCAGAAGCTCGAAAGGTCTCAGGTTTTCAGCTGAGGT-CAAGGGTAAGTGCTCC---GTGGGGAGGAACAG--A-ACT-GAGAAG--ACCTGGAGGACGAGAC------GGGGGCAGGCAGAGG-CAGCAGCCGCCTCCATGCCACAGAT-ACGGAGGAAGAATCCAGAAGGA-GGCTCCTTGCAGGCCGGGCAGCCTG--GAGCCCAGCCCC-GCCACA--CCCCCCGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGAGAC-----GG-GAGACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16109116 269 - 16982598 CCAAGACTAAACGGAAAAGCAGAAGCTCGAAAGGTCTCAGGTTTTCAGCTGAGGT-CAAGGGTAAGTGCTCC---GTGGGGAGGAACAG--A-ACT-GAGAAG--ACCTGGAGGACGAGAC------GGGGGCAGGCAGAGG-CAGCAGCCGCCTCCACGCCACAGAT-ACGGAGGAAGAATCCAGAAGGA-GGCTCCTTGCAGGCCGGGCAGCCTG--GAGCCCAGCCCC-GCCACA--CCCCCCGGAGCTGCCCATCCGCCCCCACTGAGATGATTCAGAGAC-----GG-GAGACT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2957108 254 - 3785965 CCAAGACTAAACAGAAAAGCAGAAGCTCGAAAGTTCTCAGGTTTCCAGCTTAGGC-CAAGGGTAAGTGCTCC---GTG-------------------GAGAAG--ACCTGGAGGACGAGAC------GGGGGCAGGCAGAGG-CAGCAGCCGCCTCCACGCCACAGAT-ACGGAGGAAGAATCCAGAAGGA-GGCTCCCTGCAGGCCGGGCAGCCTG--GAGCCCAGCCCC-GCCACA--CCCCCAGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGAGAT-----GG-GAGACT i cerAty1.NW_012001373v1 I 66 C 0 s chlSab2.chr2 89624862 268 - 90373283 CCAAGACTAAACCG-AAAGCAAAAGCTCGAAAGTTCTCAGGTTTTCAGCTTAGGC-CGAGGGTAAGGGCTCC---ATGGGGAGGAACAG--A-ACCGGAGAAG--ACCTGGAGGATGAGAC------GGGGGCAGGCGGAGG-CGGCAGCTGCCTCCACGCCACAGAT-ACAGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCCAGGCAGCCTG--AAGTCCAGCCCT-GCCATA---CCCCGGGAGCTGCCCGTCCGCCCCCACCGAGATGGTTCAGAGAT-----GG-GAGACT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5514307 271 + 6149316 CCAAGACTAAACAGAAAAGCAGAAGCTCGAAAGTTCTCAGGTTTCCAGCTTAGGT-CAAGGGTAAGGGCTCC---GTGGGGAGGAACAG--A-ACTGGAGAAG--ACCTGGAGGACGAGAC------GGGGGCAGGCAGAGG-CAGCAGCCGCCTCCACGCCACAGATAACGGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCCGGGCAGCCTG--GAGCCCAGCCCC-GCCACA--TCCCCTGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGAGAT-----GG-GAGACT i manLeu1.NW_012104365v1 I 5925 C 0 s colAng1.NW_012114444v1 4735848 270 - 5823884 CCAAGACTAAACAGAAAAGCAAAAGCTCGAAAGTTCTCAGGTTTTCAGCTTAGGT-CAAGGGTAAGTGCTCC---ATGGGGAGGAACAG--A-ACTAGAGAAG--ACCTGGAGGACGAGAT------GGGGGCAGGCAGAGG-CAGCAGACGCCTCCACGCCACAGAT-ACGGAGGAAGAATCTAGAAGGA-GGCTCCCTGCAGGCCGGGAAGCCTG--GAGCCCAGCCCT-GCCACA--CCCCCAGGAGCTGCCCGTCCGCCCCCACTGAGATGATTCAGAGAT-----GG-GAGACT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57449118 218 + 159171411 CCAAGCCTAAACAGAAAAGC--AAACTCGAAAGTT-------------CTCGGGT-CAAGGCTAAGGGCTCC---GTGGGAAGGAACAG--A-ACTAGAGAAG--GCCT-GAGGACGAGGC-------GGGGCAGGCAGAGG---------------------CAGCT-ACCGAGGAAGATTCCAGAAGGA-GGCTCCCTGCAGACCAGGCAGCCTG--GAGCCCAGCCT--GTCACG-CCCTCTAGGAGCTGCCGCGCC----ACACTGAGATGATTCAGG----------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15566810 267 + 16356641 CCAAGCCTAAACAGAAAAGC--AAACTGGAAAGTTCTCAGGTCTTCAGCTCAGGT-CAAGGCTAAGGGCTCC---GGGGGAAGGAGCGG--A-ACTAGAGAAG--GCCT-GAGGACGAGGC-----GGGGGGCAGGCAGAGGCAGGCAGACGCCTCCACGTC-CAGCT-ACCGAGGAAGATTCCAGAAGGA-GGCTCCCTGCAGGCCGGGCAGCCTG--GAGCCCAGCAC--GTCCCGCCCCCCCAGGAGCTTTCCCCCC--CAACACTGAGATGATTCAGGGGT-----CG-GAGACT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415679 247 + 1231380 CCAAGCCTAAACAGAAAAGC--AAACTCAAAAGTTCTCAGGTCTTCAGCTCAGGT-CAAGGCTAAGGGCTCC---GTGGGAAGGAACAG--A-ACTAGAGAAG--GCCT-GAGGCAGAGGC------------AGGCAGATG----------CCTTCATGCC-CAGCC-ACCGAGGAAGATTCCAGAAGGA-GGATCCCTGCAGGCCAGGCAGCCTG--GAGCC---TCC--GTCACG-CCCCCCAGGAGCCACCCCCCC-CCAACACTGTGATGATTCAGGGGT-----CG-GAGACT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973452 252 + 11732439 CCAAGCCTAGACAGAAAAGC--AAACTCGAAAGTCCTCAGGCCTTCAGCTCAGGT-CAAGGCTAAGGGCTCC---GTGGGAAGGAACAG--A-ACTAGAGAAG--GCCT-GAGGACGAGGC-------GGGGCAGGCAGATG----------CCTCCATGCC-CAGCT-ACCGAGGAAGATTCCAGAAGGA-GGCTCCCTGCAGGCCGGGCAGCCTG--GAGCCCAGCCC--GTCACG-CCCCCCAGGAGCTGCCCCCCC----ACACTGAGATGATTCAGGGAT-----CG-GAGACT i aotNan1.NW_018500483v1 C 0 I 27 s otoGar3.GL873542 22185694 192 + 22939663 CCAAGCCTGGATAGAGAAGC--AAAC----ATGTTTCCAAGTCTCTGGTTCAGGT-TGAAGCCAAGGGCTCC---TAGGGGCAGCACAG--G-CCT-GAGGCG--GCCAG-----------------GGGCCCAGGCACAGC-----------CCCCACTCTGAAGCT---GGAGGAAGGCTCTGGAAGGGCTGCTCCCTACAGGTCAG---------------------------CA----------------------------ACCGAGATGGTTAAGGGAT-----GGAGATGCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181127554 233 + 182113224 CCAAGTCAACACAGAAAAGT---AGCGCCAGCCCTACAAAGTCCCCAGTACAGGA-CAAAGCCAGTGGCTCTTGGATGGAAGGGGCCAG--AGACCAGGCAGA--ACCTGGAG-----------------------CAAAGA-CAGCC----CCTCCACTTAGGGGAA-----AGGAGAGATCT--CAGGG-GGTGCCATCTCGAGTAG--AGCTTGCAGATACCACCCCAAGTGGTA---CTGTGGAGGTTG-----CTGACACCAAAGAGATCATTAAGGAAT-----CT------- i mm10.chr2 C 0 I 1 s canFam3.chr24 47094581 193 + 47698779 CCGAGCCT-GACGGGAAAGC--CAACTCAGGAGTTCT--------------GGGC-C-----CAGCAGTCCC---ATGGAGGGAAAACGCAA-GCCCGACGGG--ACCCG-----CGGGAG------GGACACGAGCACACT-CTGCA-------------CGCAGCC-A----------------GAGGA-CGCTC------------------TG--CGGCCGGGTTC--ACCGCG-------GGCGGCCGGCCTGCCACCGTCAC--AGGTGATTGAGGGACATCCAGG-GACA-- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 127397 210 + 555560 CTGAGTCTAAA---GAAAAC--GAACTCGAGCGCACTGAGTGCTCC-----AGGT-GGACGATGTGGGCTCC---A--------AGCAG--A-GCCGGGGTCGGCACCCTCAGGGCGAGGCCCGGCAGGGAGCAGGCGAGAG-CTG-----GCCCGCTCTCTGCACGT-GCA-AGGAAGGCTCTAGAAGGGCTGCTCCCTGCAGG--AGCTGGCCCG--GGACC--------ACTGTG--------------GCCAAGCCA-----------------------------GG-GAAGCT i dasNov3.JH567899 C 0 C 0 a score=168998.000000 s hg38.chr20_KI270871v1_alt 51534 44 + 58661 CCGATTGTTCAAC---CCACTCCCCGCCGGACTTCCTGGAGCAACCA s panTro5.chr20 65627727 44 + 66533130 CGGAGTGTTCAAC---CCACTCCCCGCCGGACTTCCTGGAGCAACCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386689 44 + 62195757 CCGAGTGTTCAAC---CCACTCCCCGCCGGACTTCCTGGAGCAACCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 801287 44 - 1017659 CCGAGTGTTCAAC---CCACTCACCGCCGGACTTCCTGGAGCAACCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291877 44 - 110113093 CCGAGTGTTCGTC---CAACTCCCCGCCGGACTTCCTGGAGCAACCA i nomLeu3.chr13 C 0 I 1 s rheMac8.chr10 92009240 42 - 92844088 CCGAG-GTCCAGC---CGACT-CCGGCCGGACTCCCTGCAGCCGCCA i rheMac8.chr10 C 0 I 1 s macFas5.chr10 95658498 42 + 96509753 CCGAG-GTCCAGC---CGACT-CCGGCCGGACTCCCTGCAGCCGCCA i macFas5.chr10 C 0 I 1 s macNem1.NW_012014244v1 16109385 42 - 16982598 CCGAG-GTCCAGC---CGACT-CCGGCCGGACTCCCTGCAGCCGCCA i macNem1.NW_012014244v1 C 0 I 1 s cerAty1.NW_012001373v1 2957362 42 - 3785965 CCGAG-GTCCAAC---CGACT-CCGGCCGGACTCCCTGCAGCCGCCA i cerAty1.NW_012001373v1 C 0 I 1 s chlSab2.chr2 89625130 43 - 90373283 CCGAG-GTCCAAC---CGACTCCCGGCCGGACTCCCTGGAGCAGCCA i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012104365v1 5514578 42 + 6149316 CCGAG-GTCCAAC---CGACT-CCAGCCAGACTCCCTGCACCCGCCA i manLeu1.NW_012104365v1 C 0 I 1 s colAng1.NW_012114444v1 4736118 43 - 5823884 CCGAG-GTCCAAC---CGACTCCCGGCCAGACTCCCTGGAGCAGCCA i colAng1.NW_012114444v1 C 0 I 1 s calJac3.chr5 57449336 27 + 159171411 --GAGTGCTGAGC---CAGTTCCCCACAGGAC--------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15567077 28 + 16356641 CTGAATGCTGAGC---CAGCTCTCCACAGGA---------------- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415926 29 + 1231380 CTGAGTGCTGAGC---CAGCTCCCCACAGGAC--------------- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22185886 36 + 22939663 ---------CAGTTTGCACCTCCCCTCAGCACTTCCTGGAACAAC-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181127788 43 + 182113224 TGCTGTTTTCAAG---CAACCCCCACTAGAACATTCTAGAATAACA- i mm10.chr2 I 1 C 0 s canFam3.chr24 47094774 32 + 47698779 CCGAG---CCCAA---CGACTCCCATCAGGACTTTCTG--------- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 127607 35 + 555560 -------TCCAGC---TGACTCCCATCAGGGCTTTCTGGAACAAC-- i dasNov3.JH567899 C 0 C 0 e aotNan1.NW_018500483v1 1973704 27 + 11732439 I a score=2035300.000000 s hg38.chr20_KI270871v1_alt 51578 199 + 58661 TGCTCTCCTATGCATCCACAAAGCCATTCCCAGCAACCCAAAA-AAATGAA--AGACCTAATTTTGTTCAAGCTGGGTAGGCAGCAGAGCCTAATGT----CAGT----TCCAGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCCCAAAGCGAGGCAGCCACTGTCTGAAAACCACCACTCC---CCCTGCGAGAGG----------------CCG------CC-------------------CAGCATC-----CCCTGTCT s panTro5.chr20 65627771 199 + 66533130 TGCTCTCCTATGCATCCACAAAGCCATTCCCAGCAACCCAAAA-AAATGAA--AGACCTAATTTTGTTCAAGCTGGGTAGGCAGCAGAGCCTAATGT----CAGT----TCCAGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCCCAAAGCGAGGCAGCCACTGTCCGAAAACCACCACTCC---CTCTGCGAGAGG----------------CCG------CC-------------------CAGCATC-----CCCTGTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386733 199 + 62195757 TGCTCTCCTATGCATCCACAAAGCCATTCCCAGCAACCCAAAA-AAATGAA--AGACCTAATTTTGTTCAAGCTGGGTAGGCAGCAGAGCCTAATGT----CAGT----TCCAGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCCCAAAGCGAGGCAGCCACTGTCCGAAAACCACCACTCC---CTCTGCGAGAGG----------------CCG------CC-------------------CAGCATC-----CCCTGTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 801331 203 - 1017659 TGCTCTCCCGTGCATCCACAAAGCCATTCCCAGCAACCCAAAA-AAATGAA--AGACCTAATTTTGTTCAAGCTGGGTAGGCAGCAGAGCCTAATGT----CAGT----TCCAGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCCCAAAGCGAGGCAGCCACTGTCCGAAAACCACCACTCC---CTCTGCGAGAGG----------------CCG------CC---------------CATGCAGCATC-----CCCTGTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109291922 199 - 110113093 TGCTCTCCTGTGCATCCACAAAGCCATTCCCAGCAACCCAAAA-AAATTAA--AGACCTAATTCTATTCAAGCTGGGTAGGCAGCAGAGCCTAATGT----CAGT----TCCAGAGCACGTC-------------------------------TGGAAAACATCCT--------TAT-CCCCAAAGCGAAGCAGCCACTGTCCGAAAACCACCACTTC---CTCTGTGAGAGG----------------CTG------CC-------------------CAGCATC-----CCCTGTCT i nomLeu3.chr13 I 1 C 0 s rheMac8.chr10 92009283 199 - 92844088 TGCTCTCCTGAGCGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--AGACTTAATTGTATTCAAGCTGGGCAGGCAGCAGAGCCTGAGGA----CAGT----TCCCGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCTCAAAGCAAGGCGGCCACTGTCTGAAAACTGCCACTTC---CTCTTCGAGAGG----------------CCA------CC-------------------CAGCAGC-----CCCTGTCT i rheMac8.chr10 I 1 C 0 s macFas5.chr10 95658541 199 + 96509753 TGCTCTCCTGAGCGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--AGACTTAATTGTATTCAAGCTGGGCAGGCAGCAGAGCCTGAGGA----CAGT----TCCCGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCTCAAAGCAAGGCGGCCACTGTCTGAAAACTGCCACTTC---CTCTTCGAGAGG----------------CCA------CC-------------------CAGCAGC-----CCCTGTCT i macFas5.chr10 I 1 C 0 s macNem1.NW_012014244v1 16109428 199 - 16982598 TGCTCTCCTGAGCGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--AGACTTAATTGTATTCAAGCTGGGCAGGCAGCAGAGCCTGAGGA----CAGT----TCCCGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCTCAAAGCAAGGCGGCCACTGTCTGAAAACTGCCACTTC---CTCTTCGAGAGG----------------CCA------CC-------------------CAGAAGC-----CCCTGTCT i macNem1.NW_012014244v1 I 1 C 0 s cerAty1.NW_012001373v1 2957405 199 - 3785965 TGCTCTCCTGAGCGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--AGACTTAATTGTATTCAAGCTGGGCAGGCAGCAGAGCCTGAGGA----CAGT----TCCCGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCTCAGAGCAAGGCGGCCACTGTCTGAAAACTGCCACTTC---CTCTTCGAGAGG----------------CCG------CC-------------------CAGCAGC-----CCCTGTCT i cerAty1.NW_012001373v1 I 1 C 0 s chlSab2.chr2 89625174 198 - 90373283 CGCTCTCCTGAGTGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--ATACTTAATTGTA-TCAAGCTGGGTAGGCAGCAGAGCCTAAGGA----CAGC----TCCCAAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCTCAAAGCAAGGCAGCCACTGTCTGAAAACTGCCACTTC---CCCTTCGAGAGG----------------CCA------CC-------------------CAGCAGC-----CCCTGTCT i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012104365v1 5514621 199 + 6149316 TGCTCTCCTGAGCGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--AGACTTAATTGTATTCAAGCCGGGCAGGCAGCAGAGCCTGAGGA----CAGT----TCCCGAGCGCGTC-------------------------------TGGAAACCATCCT--------CAT-CCTCAGAGCAAGGCGGCCACTGTCTGAAAACTGCCACTTC---CTCTTCGAGAGG----------------CCA------CC-------------------CAGCAGC-----CCCTGTCT i manLeu1.NW_012104365v1 I 1 C 0 s colAng1.NW_012114444v1 4736162 197 - 5823884 TGCTCTCCTGAGTGTCCACAAAGCCACTCCCAGGAATCCAAAA-AAATTAA--AGACCTCATTGTATTCAAGCTGGGTAGGCAGCAGAGCCTGAGGA----CAGT----TCCAGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCTCAAAGCAAGGCAGCCACTGTCTGAAAACCGCCACTTC---CTCTTCGACGGG----------------CCA------CC-------------------CAGCATC-----CC--GTCT i colAng1.NW_012114444v1 I 1 C 0 s calJac3.chr5 57449363 195 + 159171411 TGCTCTTCTGTGCATCCACAGAATTATTCCCGCTAATCCAAAA-AAATTAA--AGACCTAATTTTATTCAAGCTGGGCAGGCAGTGGAGCCTAATGA----CAGT----TCCAGAGCATGTC-------------------------------TGGAAAACATCCT--------CAT-CCCC-AAGCAAGGCAGCCATGTTCC--AAACCACCCCTTC---CCCTGCAAGAAG----------------TCA------CC-------------------CA-CATC-----CCCTGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15567105 188 + 16356641 -------CTGTGCATCCACAGAATTATTCCCGCTAATCCAAAA-AAATTAA--AGACCTAATTTTATTCAAGCTGGGCAGGCAGTGGAGCCTAATGA----CAGT----TCTGGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCCA-AAGCCAGGCGGCCATGTTCC--AAACACCCCCTTC---CCCTGCAAGAGG----------------TCA------CC-------------------CA-CACC-----CCCTGCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 415955 191 + 1231380 TGCTCTGCTGTGCATCCACAGAATTATTCCCGCTAATCCAAAA------AA--AGATCTAATTTTATTCAAGCTGGGCAGGCAGTGGAGCCTAATGA----GAGC----TCCGGAGCACGTC-------------------------------TGGAAAACATCCT--------CAT-CCCCAAAGCCAGGCGGCCATGTTCC--AAACCACCCCTTC---CCCTGCAAGAGG----------------TCG------CC-------------------CA-CAGC-----CCCTGCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973731 195 + 11732439 TGCTCTTCTGTACATCCAAAGAATCATTCCCGCTAATCCAAAA-AAATTAA--AGA-CTAATTTTACTCAAGCTGGGCAGGCAGTGGAGCCTAATGA----CAGT----TCCAGAGCATGTC-------------------------------TGGAAAACATCCT--------CAT-CCCCCGAGCGAGGCAGCCATGTTCC--AAACCACCCCTTC---CCCTGCAAGAGG----------------TCA------CC-------------------CA-CATC-----CCCTGCCC i aotNan1.NW_018500483v1 I 27 C 0 s otoGar3.GL873542 22185922 207 + 22939663 TGCTCTTCTGTGCATTGACAAAATTATTCCCAGTAATCaaaaa-aaaaaaattaaacttaattttattCAAGCTAAGTAACCAGCAGAGCCTAATGA----CCAT----TCTAGAGCATGTC-------------------------------TGGAAAGCATCCT--------TCTGCCCCTAAGTAGAGTAGCCATTGTCCCCAAACCACCATTTC---CTCTTCAAGAAG----------------CTG------CT-------------------CAACAACTTGGTCTCTGCCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181127831 209 + 182113224 -GCCCAGCTGGGCGTTCACAAAATTATTCCCAATATCAGAAAAGAAATGTA--AGACCTAATTCTGTCCCAGCTAGACTCccagctgagcccaaaga----caac-----cgagggtgtgtc-------------------------------tggaacacagcctgcctc---ctt-ttttcatgcagagaagccactgtcccagaaTCCTCTTTTC---CTCTACAAAGGC----------------TCTGATGGCCC-------------------CAGCAGC-----CACTCCCT i mm10.chr2 C 0 I 987 s canFam3.chr24 47094806 200 + 47698779 ----------TACATTTGCAAAATTATTCCAAGTAATCCAAAA-GAATTAG--AGACCTGATTTTATTCAAGCTGGGTAACCAGCAGAGCCTGATGACACGCAGC----TCTGGAGCGCATC-------------------------------CTGCAGACAAGGT--------CGG-ACTC------GGGCTG-----GCCTGAACACTCCAGCCCCCAGCCCCCCAAGAGGCGCAGCTGTGGCCGGCCCT------CC-------------------CGGCATC-----CCTCCCT- i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 127642 250 + 555560 TGCTGTTTTGTCCATTTAGAAAATTACCCC-------CCAAAA-AAATTAA--A-ACCTAATTTCATGCAAGCCAGATAACCAACACAGCACAATGA----AAATTATTTTGGGAGCGCATCCAAGTAAGTCGGAGCTCAAGGCTCAGCGACTTGGACGGCGTCCCTCCTCCCATTT-CCCTGAAGCAGAGCAGCCCTTGTCCTCAA---GCCTGTTC---CTCTGCAAGGAG----------------CTG------CCGGAAAGCCCGAGGTCCCGCCAGCACC-----CACTCCCT i dasNov3.JH567899 C 0 C 0 a score=40772.000000 s hg38.chr20_KI270871v1_alt 51777 5 + 58661 G------------------GGGC s panTro5.chr20 65627970 5 + 66533130 G------------------GGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386932 5 + 62195757 G------------------GGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 801534 5 - 1017659 G------------------GGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109292121 5 - 110113093 G------------------GGGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92009482 5 - 92844088 G------------------GGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95658740 5 + 96509753 G------------------GGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16109627 5 - 16982598 G------------------GGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2957604 5 - 3785965 G------------------GGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89625372 5 - 90373283 G------------------GGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5514820 5 + 6149316 G------------------GGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4736359 5 - 5823884 G------------------GGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57449558 5 + 159171411 A------------------GGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15567293 5 + 16356641 A------------------GGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 416146 5 + 1231380 A------------------GGGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973926 5 + 11732439 A------------------GGGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22186129 23 + 22939663 ACACTGGGTCTCCTCCATTTGGC i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47095006 5 + 47698779 G------------------CAGC i canFam3.chr24 C 0 C 0 s dasNov3.JH567899 127892 5 + 555560 ------------------CGGGC i dasNov3.JH567899 C 0 N 0 e mm10.chr2 181128040 987 + 182113224 I a score=4188063.000000 s hg38.chr20_KI270871v1_alt 51782 528 + 58661 CAGCACAAGCTGCT-GGCCCTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGAG-AGAAGC----CTTCTCAGAGGCTGG-------CCTCTCCACTCAAGCCGATGTCTC----CTG----TGGGGG----TGGAGGGGCCGCCAAGTGCCCCGAGGCCTCGGGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACGGGGTCTGTGGTTTAGACAACAGAAGGGACATGAAGCTCTGTGGAGAGCTCCCGTCGCCCCGTCCTCCACCACAC--ATCATCCTGGGGACCTGCGTGTGATGCCCCCCACGCACAGCAGCC-TGCACCCCAGGGCTATGAGCCCCTTT-CAAGACTGAAGCTCCCACCGGGGCCGCCTAACCCCACAGGGAGCACAGCACAGGCCCACTGCTAACAGGAGAAAGCAC-CTGCACACTAGCTCCCC-----GACGCTGGAACAGGGCCATG----GCCCTGCGCCCCACACTCCAGCTCCACTCTCCACAGGAAAAGGCTCCCAGAATCCAGC----CACTCAGTG-------TG-TGGGGGCAGGGGCCC s panTro5.chr20 65627975 528 + 66533130 CAGCACAAGCTGCT-GGCCCTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGAG-AGAAGC----CTTCTCAGAGGCTGG-------CCTCTCCACTCAAGCTGATGTCTC----CTG----TGGGGG----TGGAGGGGCCGCCAAGTGCCCCGAGGCCTCGGGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACGGGGTCTGTGGTTTAGACAACAGAAGGGACATGAAGCTCTGTGGAGAGCTCACGTCGCCCCGTCCTCCACCACAC--ATCATCCTGGGGACCTGCGTGTGATGCCCCCCACGCACAGCAGCC-TGCACCCCAGGGCTATGAGCCCCTTT-CAAGACTGAAGCTCCCACCGGGGCCGCCTAACCCCACAGGGAGCACAGCACAGGCCCACTGCTAACAGGAGAAAGCAC-CTGCACACTGGCTCCCC-----GATGCTGGAACAGGGCCATG----GCCCTGCGCCCCACACTCCGGCTCTACTCTCCACAGGAAAAGGCTCCCAGAATCCAGC----CACTCAGTG-------TG-TGGGGGCAGGGGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61386937 528 + 62195757 CAGCACAAGCTGCT-GGCCCTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGAG-AGAGGC----CTTCTCAGAGGCTGG-------CCTCTCCACTCAAGCTGATGTCTC----CTG----TGGGGG----TGGAGGGGCCGCCAAGTGCCCCGAGGCCTCGGGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACGGGGTCTGTGGTTTAGACAACAGAAGGGACATGAAGCTCTGTGGAGAGCTCACGTCGCCCCGTCCTCCACCACAC--ATCATCCTGGGGACCTGCATGTGATGCCCCCCACGCACAGCAGCC-TGCACCCCAGGGCTATGAGCCCCTTT-CAAGACTGAAGCTCCCACCGGGGCCGCCTAACCCCACAGGGAGCACAGCATAGGCCCACTGCTAACAGGAGAAAGCAC-CTGCACACTGGCTCCCC-----GATGCTGGAACAGGGCCATG----GCCCTGCGCCCCACACTCCGGCTCTACTCTCCACAGGAAAAGGCTCCCAGAATCCAGC----CACTCAGTG-------TG-TGGGGGCAGGGGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 801539 527 - 1017659 CAGCACAAGCTGCT-GGCCCTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGAG-AGAAGC----CTTCTCAGAGGCTGG-------CCTCTCCACTCAAGCCGATGTCTC----CTG----TGGGGG----TGGAGGGGCCGCCAAGTGCCCTGAGGCCTCGGGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACGGGGTCTGTGGTTTAGACAACAGAAGGGACATGAAGCTCTGTGGAGAGCTCACGTCGCCCCGTCCTCCACCACAC--ATCATCCTGGGGACCTGCGTGTGATG-CCCCCACGCACAGCAGCC-TATACCCCAGGGCTATGAGCCCCTTT-CAAGACTGAAGCTCCCACCGGGGCCGCCTAACCCCACAGGGAGCACAGCACAAGCCCACTGATAACAGGAGAAAGCAC-CTACACACTGGCTCCCC-----GACACTGGAACAGGGCCATG----GCCCTGCGCCCCACACTCTGGCTCCACTCTCCACAGGAAAAGGCTCCCAGAATCCAGC----CACTCAGTG-------TG-TGGGGGCAGGGGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109292126 526 - 110113093 CAGCACAAGCTGCT-CGCACTGAGCTGGGAGCTCTGGGCAGCTGGTGGCCAGGA-AGACGC----CTTCTCAGAGGCTGG-------CCTCTCCACTCTAACCCATGTCTC----CTG----TGGGGG----TGGAGGGGCTGCCAAGTGCCCCGAGGCCTC-AGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCGCCT-GGCACGGGGTCTGTGGTTTAGATGACAGAAGGGACGTGAAGCTCTGTGGAGAGCTCACATTGCCCCGTCCTCCACCACAC--ATCATCCTGGGGACCCGCGTGTGACG-CCCCCACGCACAACAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCGCCTAACCCCACAGGGAGCACAGCACAGGCCCACTGCTAACAGGAGGAAGCAC-CTGCACGCTGGCTCCCC-----GACACTGGAACAGGGCCATG----GCCCTGCACCCCACACTCCGGCTCCACTCTCCACAGGAAAGGGCTCCCAGAATCCAGC----CACTCAGTG-------TG-TGGGGGCAGGGGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92009487 507 - 92844088 CAGCACAAGCAGCT-GGCACTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGGG-AGGAGC----CTTCTCCGACGCCAG-------CCTCTCCAC-CGAGCTGACATCTC----CTG--------------------------CAGGTGCCCCGAGGCCTC-AGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGTCTGTGGTTTACATGACGGAAGGGACAGGAAGCTCTGTGGAGAGCTCACATCGCCCCATCCTCCACCACAC--ATCATCCTGGGGACCCACATGCAACA-CCCCCACGCACGGCAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCACCGAACCCCACGGGGAGCACAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACAGGGCCCTG----GCCCTGCACCCCACACACCAGCTCCCCTCTCCGCAGGAAAGGGCTCCCAGAATCCAGC----CACTCGGTG-------TG-TGGGCGCAGGAGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95658745 507 + 96509753 CAGCACAAGCAGCT-GGCACTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGGG-AGGAGC----CTTCTCCGACGCCAG-------CCTCTCCAC-CGAGCTGACATCTC----CTG--------------------------CAGGTGCCCCGAGGCCTC-AGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGTCTGTGGTTTACATGACGGAAGGGACAGGAAGCTCTGTGGAGAGCTCACATCGCCCCATCCTCCACCACAC--ATCATCCTGGGGACCCACATGCAACA-CCCCCACGCACGGCAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCACCGAACCCCACGGGGAGCACAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACAGGGCCCTG----GCCCTGCACCCCACACACCAGCTCCCCTCTCCGCAGGAAAGGGCTCCCAGAATCCAGC----CACTCGGTG-------TG-TGGGCGCAGGAGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16109632 507 - 16982598 CAGCACAAGCAGCT-GGCACTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGGG-AGGAGC----CTTCTCCGACGCCAG-------CCTCTCCAC-CGAGCTGACATCTC----CTG--------------------------CAGGTGCCCCGAGGCCTC-GGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGTCTGTGGTTTACATGACGGAAGGGACAGGAAGCTCTGTGGAGAGCTCACATCGCCCCATCCTCCACCACAC--ATCATCCTGGGGACCCACATGCAACA-CCCCCACGCACGGCAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCACCGAACCCCACGGGGAGCACAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACAGGGCCCTG----GCCCTGCACCCCACACACCAGCTCCCCTCTCCGCAGGAAAAGGTTCCCAGAATCCAGC----CACTCGGTG-------TG-TGGGCGCAGGAGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2957609 507 - 3785965 CAGCACAAGTAGCT-GGCACTGGCCTGGGAGCTCTGGGCAGCTGGTGGCCAGGG-AGAAGC----CTTCTCGGAGGCCGG-------CCTCTCCAC-CGAGCTGACATCTC----CTG--------------------------CAAGTGCCCCGAGGCCTC-GGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGTCTGTGGTTTACATGACAGAAGGGACAGGAAGCTCTGTGGAGAGCTCACATCGCCCCATCCTCCATCACAC--ATCATCCTGGGGACCCACGTGCAACA-TCCCCACCCACGGCAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCGCCGAACCCCACAGGGAGCACAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACAGGGCCCTG----GCCCTGCACCCCACACACCAGCTCCCCTCTCCGCAGGAAAGGGCTCCCAGAATCCAGC----CACTCGGTG-------GG-TGGGGGCAGGAGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89625377 526 - 90373283 CAGTACAAGTTGCT-GGCACTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGGG-AGAAGT----CTTCTCGGAGGCCAG-------CCTCTCCAC-CGAGCTGACGTCTC----CTGC---AGGGGG----TGGAGGGGCCGCCAAGTGCCCCGAGGCCTC-AGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGTCTGTGGTTTAGATGACAGAAGGGACAGGAAGCTCTGTGGAGAGCTCACATCACCCCATCCTCCACCACAC--ATCATGCTGGGGACCCACGTCCAACA-CCCCCATGCACGGCAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCGCCGAACCCCACAGGGAGCACAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACGGGGCCCTG----GCCCTGCACTCCACACACCGGCTCCCCTCTCCGCAGGAAAGGGCTCCCAGAATCCAGC----CGCTCGGTG-------TG-TGGGGGCAGGAGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5514825 507 + 6149316 CAGCACAAGTAGCT-GGCACTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCGGGG-AGAAGC----CTTCTCGGAGGCCGG-------CCTCTCCAC-CGAGCTGACATCTC----CTG--------------------------CAAGTGCCCCGAGGCCTC-GGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGTCTGTGGTTTACATGACAGAAGGGACAGGAAGCTCTGTGGAGAGCTCGCATCGCCCCATCCTCCACCACAC--ATCATCCTGGGGACCCACGTGCAACA-CCCCCACGCACGGCAGCC-TGCACCCCAGAGCTATGAGCCCCTTT-CAAGACTGAAGCCCCCACCGGGGCCGCCGAACCCCACAGGGAGCACAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACGGGGCCCTG----GCCCTGCACCCCACACACCAGCTCCCCTCTCCACAGGAAAGGGCTCCCAGAATCCAGC----CACTCGGTG-------TG-TGGGGGCAGAAGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4736364 503 - 5823884 CAGCACAAGTTGCT-GGCACTGGGCTGGGAGCTCTGGGCAGCTGGTGGCCAGGG-AGAAGT----CTTCTCGGAGGCCGG-------CCTCTCCAT-CGAGCTGACATCTC----CTGC---AGGGGA----TGGAGGGCCGC-CAAGTGCCCCGAGGCCTC-GGGCAGGTACCTTAGCCTCACCCACCCCAGCCCCTCACCT-GGCACAGGGCCTGTGGTTTAGATGGCAGAAGGGACATGAAGCTCTGTGGAGAGCTCGCGTCGCCCCATCCTCCACCACAC--ATCATCCTGGGGACCCCCGTGCAACACCCCCCACGCACGGCA-CC-TGCACCCCAGAGCTAGGAGCCCC-TT-CAAGACTGAAGCCCCCACCGGGGCCGCCTAACCCCACAGAGAGCCCAGCACAGGCCCACTGCTAACAGGAAGAAGCAC-CTGTACTCTGGCTCCCC-----GACGCTGGAACGGGG-------------------------ACCGGCTCCCCTCTCCGCAGGAAAGGGCTCCCAGAATCCAGC----CACTCGGTG-------TG-TGGGGGCAGGAGCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57449563 482 + 159171411 CAGC-CGCTCTGCC-AGCA-----CTGGGAACTCCGGGCAGCTGGTGTCCCAAG-AGAAGC----CTTCTCGGAGGCCCC-------CCTCTCCACCCGAGCAGACGCCTC----CTT-------GGA----GGGAGGGGCCGCCAAGTACCC-GAGGCCTC--------------------ACCCACCCCAG-CCCTCACAG-GGCATGGGGTCTGTGGTTCA-------GAAGGGATGTGAAGCTCTGTGGAGAGCTCGAGTCG--CCGTCCTCCACCACAC--ACTGTCCTGGGGATCCGTGAGCCACACCCCCGACATAGGGCAGCC-TGTACCCCAGGGTGA-GGGCCCCTTT-CAAGACCGAGGCCTCCACCGGGGCCGCCAAACCCCACTGAGAGCACAGCACAGGCCCACTGCCAACAGGAGCAAGCGC-CTGCACTCTGATGCCC-------ACGCAGGAAC--GGCCCTG----GGCCTGCACCCCACACCCC-GCTGCACTCTCCACAGGAAAGGGCTTCCAGAACCCAGC----CACTCAGCG-------CA-CGGGGGCCGGGGCCC i calJac3.chr5 C 0 I 7 s saiBol1.JH378156 15567298 470 + 16356641 TGGC-TGTGCTGCT-GGCA-----CTGGGAGCTCCGGGCAGCTAGTGTCCCGGG-AGAAGC----CTTCCCGGAGGCCCG-------CCTCTCCACCCGAGCAGACGCCTC----CTG-------GGG----CGGAGGGGGCTCCAAGTGCCC-AAGGCCTC--------------------ACCCACCCCAGCCCCTCACCG-GGCACGGGGTCTGTGGTTTA-------GAAGGGACGTGAAGCTCCGTGGAGAGCTCTTGTCA-CCCGTCCTGGACCACAC--GCTGTCCTGAGGATCGGTGAGCCACA-CCCCGACGCACGGCAGCC-CGCACCCAAGGGCGA-GGGCCCCTTT-CAAGACCGAGGCCTCCAGCGGGGGGCCCA----------GGAGCACAGCACAGGCCCACTGCCAACAGGAGCAAGCGC-CTGCACTCTGGC-CCC-------ACGCAGGAAC--GGCCCTG----GGCCCGCACTCCACACTCCGGCTCCACTCTCCACAGGAAAGGGCTTCCAGAA-CCAGC----CGCTCAGTG-------CC-C-GGGGCCGGGGCC- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 416151 479 + 1231380 CGGC-CGTGCTGCC-GGCA-----CTGGGAGCTCCGGGCAGCTGGTGTCCCGGG-AGAAGC----CTTCTTGGAGGCCTG-------CCTCTCCACCCGAGCAGACGCCTC----CTG-------GGG-----GGAGGGGACGCCAAGTGCCC-GAGACCTC--------------------ACCCACCCCAGCCCCTCACCG-GGCATGGGGTCTGTGGTTTA-------GAAGAGGCGTGAAGCTCTGTGGAGGAC----GTCG-CCTGTCCTCCACCACAC--ACTGTCCTGGGGATCCGTGAGCCACACCCCTGACACACGGCAGCC-TGCACCCCAGGGCGA-GGGCCCCTTT-CAAGACCGAGGCCTCCACCGGGGCCGCCTAACCCCCCCGGGAGCACAGCACAGGCCCACTGCCAACAGGAGCAAGCGC-CTGCACTCTGGTCCCC-------ACGCAGGAAC--GGCCCTG----GGCCTGCACCCCACACTCCAGCTCCACTCTCCACAGGAAAGGGCTTCCAGAA-CCAGC----CACTCAGTG-------CA-CGGGGACCGGGGCCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1973931 485 + 11732439 CAGC-CACGCTGCC-GGCA-----CTGGGAGCTCCGGGCAGCTGGTGTCCCGGG-AGAAGC----ATTCTCGGAGGCCTG-------CCTCTCCACCCAAGCAGACGCCTC----CTG-------AGG---GGGGAGGGGACGCCAAGTGCCC-GAGGCCTC--------------------CCCCACCCCAGCCCCTCACCG-GGCACAGGGTCTGTGGTTTA-------GAAGGGACATGAAGCTCTGTGGAGAGATCACGTCG-CCCGTCCTCCACCACAC--ACTGTCCTGGGGATCCGTGAGTCACACCCCCGATGCACAGCAGCC-TGCACCGCAGTGCAA-GGACCCCTTT-CAAGACCGAGGCCTCCACCGGGGCCGCCTAATCCCCCCGGGAGCACAGCACAGGCCCACTGCCAACAGGAGCAAGCGC-CTGCACTCTGGTCCCC-------ACGCAGGAAC--GGCCCTG----GGCCTGCAGCCCACACTCCGGCTCCACTCTCCACAGGAAAGGGCTTCCAGAACCCAGC----CACTCAGTG-------CA-CGGGGGCCGGGGCC- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22186152 420 + 22939663 CAGCTTGAGCTACTAGGCACTAAGATGGGTGCTCTGGGCAGCTGGCCACCAGGGAAGGAGC----CTTCTCACAGATAGG-------CCCCTTCAAGCCAGAGCACA-------------------------CAGGGGGGCTGCCACTCTCCTGAAGTCCTC-----------------------------AGTCCCTCCC---------AGGTTCTTGTT----------------------ACTCCTGTG-------------------TCCTCCCCAACACT-GCTGTCCTGGAGCCCCCAGTGCACTG-----CACAGAGAGTGGTCACTCACCCCTCCCCTCCAAGTCCCTTTCCAGGACCTCTAGCCCCATGGTGACAGCC-AACCCCACACAGAGCACAGCTCAGACCCATTTCTAATGTGAGGAACTGCTTTAGATTCTAACTCTTCTGCAGGACTCTGATAT-----CCTG----GCCCTGGGCCT------------------------GGAAAGGGGCCCTGAACTCCCAT----CACTGGGTGCCCTGGCTG-GTGGGGATGTGGCTC i otoGar3.GL873542 C 0 I 1 s canFam3.chr24 47095011 488 + 47698779 CAACCCCAGATGCTAAGCAGCGGGACCAAGGCTCCGGGCGGCTGG-GGCTGGGG-AGGAGCCAGACCCCTCCATGGCCGGGTCACCCCCGCCCCGT-GGACCAGGAGTCTCTGTGCTGTATGTGGGGGCTGCTGGAGAAGGT--CACGGCCCCTGTACCTGCCGGGCCTGAATCCTGGCT--GCCCCCTGGGGGCCCTGACCTCAGCATCGGGCGGACGGCTGACACTGTGCGAAGCAC--------CTGAGAACAAT---------CCTGTCCCCAACCCCGCTCATCGTCCCAGA--------------------CACTCAAGGAAGGG-T------TAGAA----GACCCCCTTT-CCCAGAGCAGACCGCCCCCGAG---ACCCAGACCCACATGAAGCAGAGCCCGGGA-----GGAAGCAGGAAGCATTAG-CGACA-----GCCCCCC---------------AGGGGCCCTGCGTCCCCCCCTCCCCCAGCCACGTCCCCCGCCCTCCACCAGGAAAGAGGCTGGGGGCTCAGCAGGGCGGGCAGTG-------CGCTGGAGGGACGAGCAC i canFam3.chr24 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I a score=7513.000000 s hg38.chr20_KI270871v1_alt 52310 1 + 58661 T s panTro5.chr20 65628503 1 + 66533130 T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61387465 1 + 62195757 T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802066 1 - 1017659 T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109292652 1 - 110113093 T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92009994 1 - 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95659252 1 + 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16110139 1 - 16982598 T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958116 1 - 3785965 T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89625903 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5515332 1 + 6149316 T i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4736867 1 - 5823884 C i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15567768 1 + 16356641 C i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1974416 1 + 11732439 T i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22186573 1 + 22939663 T i otoGar3.GL873542 I 1 C 0 s canFam3.chr24 47095499 1 + 47698779 T i canFam3.chr24 C 0 I 2364 e mm10.chr2 181128040 987 + 182113224 I e cebCap1.NW_016107870v1 416630 0 + 1231380 C e calJac3.chr5 57450045 7 + 159171411 I a score=843402.000000 s hg38.chr20_KI270871v1_alt 52311 118 + 58661 GCTGACTTAGAAACAAGTGGCACATTGATCCGCATTCAAACTTGCCAGCCAATCAACCACAGCCCCGCGCACAGACTCTCCCAGGTGGGACTGAGGGGGTCTCCCCTGTCCTTGGCA-G- s panTro5.chr20 65628504 118 + 66533130 GCTGACTTAGAAACAAGTGGCACATTGATCCGCATTCAAACTTGCCAGCCAATCAACCACAGCCCCGCGCACAGACTCTCCCAGGTGGGACTGAGGGGGTCTCCCCTGTACTTGGCA-G- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61387466 118 + 62195757 GCTGACTTAGAAACAAGTGGCACATTGATCCGCATTCAAACTTGCCAGCCAATCAACCACAGCCCCGCGCACAGACTCTCCCAGGTGGGACTGAGGGGGTCTCCCCTGTCCTTGGCA-G- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802067 118 - 1017659 GCTGACTTAGAAACAAGTGGCACATTGATCCGCATTCAAACTTGCCAGCCAATCAACCACAGCCCCACGCACAGACTCTCCCAGGTGGGACTGAGGGGGTCTCCCCTGCCCTTGGCA-G- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109292653 118 - 110113093 GCTGACTTAGAAACAAGTGGCACATTGATCTGCATTCAAACGTGCCAGCCAATCAACCACAGCCCCGCGCACAGACTCTCCCTGGTGGGACTGAGGGGGGCTCCCCTGCCCTTGGCA-G- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92009995 115 - 92844088 CCTGACTTAGAAACAAGTGGCACATGGATCAGCATTCACACTTGCCAGCCAATCACCCACAGCCCCGTG--CAGACTCTCCCCAGTGGGACTGAGGGGG-CTCTCCCGCCCTTCGCA-G- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95659253 115 + 96509753 CCTGACTTAGAAACAAGTGGCACATGGATCAGCATTCACACTTGCCAGCCAATCACCCACAGCCCCGTG--CAGACTCTCCCCAGTGGGACTGAGGGGG-CTCTCCCGCCCTTCGCA-G- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16110140 115 - 16982598 CCTGACTTAGAAACAAGTGGCACATGGATCAGCATTCACACTTGCCAGCCAATCACCCACAGCCCCGAG--CAGACTCTCCCCAGTGGGACTGAGGGGG-CTCTCCCGCCCTTCGCA-G- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958117 115 - 3785965 GCTGACTTAGAAACAAGTGGCACATGGATCAGCATTCACACTTGCCAGCCAATCACCCACAGCCCCGTG--CAGACTCTCCCCAGTGGGACTGAGGGGG-CTCTCCTGCCCTTCGCA-G- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89625904 115 - 90373283 CCTGACTTAGAAACAAGTGGCCCATGGATCAGCATTCACACTTGCCAGCCAATCACCCAGAGCCCCATG--CAGACTCTCCCCAGCGGGACTGAGGGGG-CTCTCCTGCCCTTCGCA-G- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5515333 115 + 6149316 CCTGACTTAGAAGCAAGTGGCACGTGGATCAGCATTCACACTTGCCAGCCAATCACCCACAGCCCCGTG--CAGACTCTCCCCAGTGGGACTGAGGGGG-CTCTCCTGCCCTTCGCA-G- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4736868 115 - 5823884 GCTGACTTAGAAACAAGTGGCACAGGGATCAGCGTTCAGACTTGCCAGCCAATCACCCACAGCCCCGTG--CAGACCCTCCCCAGTGGGACCGAGGGGG-CTCTCCTGCCCTTCGCA-G- i colAng1.NW_012114444v1 C 0 C 0 s saiBol1.JH378156 15567769 116 + 16356641 GCTGACTTAGGAACCAGGGGCACACTGACCAGCATTCAAACTTGCCCGCCGACCAGCCA-AGCCCTGCGCAGGGAGCCGTCCCCATGGCTCTGAGGGGG-CTCCCCTGCCCTTCCCAG-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 416630 115 + 1231380 ACTGACTTAGAAACAAGTGGCACATTGATCAGCATTCAAACTTGCCAGCCGATCAGCCG-AGCCCTGCATACGGAGCTCTCCCCATGGGACTTAGGGGG-CTCCCCTGCCCTTCCCA--- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1974417 113 + 11732439 GCTGACTCAGAAGCAAGTGACACACTGATCAGCATTCAAACTTGCCAGCGGATCAGCCA-AGCCCTGCGCACGGGGCTCTCCCCATGGGACTCA--GGA-CTCCCCTGCCCTTCCCA--- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22186574 107 + 22939663 GCTGACTCAGAAACAAGCAGC-CACTTATCTGCATCT---CTCATGAGTGAATCAACCACAGGCTTGGA--CAGTGTTCCCCCAAGGGGACAGGGCAGG------GCACCCTCCACG-GC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I e calJac3.chr5 57450045 7 + 159171411 I a score=3836374.000000 s hg38.chr20_KI270871v1_alt 52429 439 + 58661 GGGCGTCTCCCCCACGCA-CCCCCAGTCCCGTCCTCTCCACAGGCTCCAGATGCCCACA--TCCCCAGAACACTCAATGGGACA--ACTCAGAGCAGGTTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACGCTATTTCAGAAGTGCCTTCTCCTCCTGGAAATGTCGACCCCAAAGCTCTCACTGGGAAACCTCTGGCCTGG-CCCCGGGAAGCGACAGGCGCAGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCAT-CAGGGGCCACAAGAG-CAGAGAGCTCTTCAGCCCCATGTTCTCCTGGACGAATTAAAAGCACGACCCATCCCAGCTTCAGAAAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCTATTTGCTAAGCAGCATCCTGAGCCACT s panTro5.chr20 65628622 439 + 66533130 GGGCGTCTCCCCCACGCA-CCCCCAGTCCCATCCTCTCCACGGGCTCCAGATGCCCACA--TCCCCAGAACACTCAATGGGACA--ACTCAGAGCAGGTTACAGAGAAAGAAAAGCCACACAAGCTCACCAATGGCACGCTATTTCAGAAGTGCCTTCTCCTCCTGGAAATGTCGACCCCAAAGCTCTCACTGGGAAACCTCTGGCCTGG-CCCCGGGAAGCGACAGGCGCAGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCAT-CAGGGGCCACAAGAG-CAGAGAGCTCTTCAGCCCCATGTTCTCCTGGACGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCTATTTGCTAAGCAGCATCCTGAGCCACT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61387584 439 + 62195757 GGGCGTCTCCCCTACGCA-CCCCCAGTCCCGTCCTCTCCACGGGCTCCAGATGCCCACA--TCCCCAGAACACTCAATGGGACA--ACTCAGAGCAGGTTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACGCTATTTCAGAAGTGCCTTCTCCTCCTGGAAATGTCGACCCCAAAGCTCTCACTGGGAAACCTCTGGCCTGG-CCCCGGGAAGCGACAGGCGCAGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCAT-CAGGGGCCACAAGAG-CAGAGAGCTCTTCAGCCCCATGTTCTCCTGGACTAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCTATTTGCTAAGCAGCATCCTGAGCCACT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802185 438 - 1017659 GGGCGTCTCCCCCACACA-CCCCCAGTCCCGTCCTCTCCACGGGCTCCAGATGCCCACA--ACCCCAGAACACTCAATGGGACA--ACTCAGAGCAGGTTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACGTTATTTCAGAAGTGCCTTCTCCTCCTGGAAATGTCGACCCCAAAGCTCTCACTGGGAAACCTGTGGCCTGG--CCCGGGAAGCGACAGGCACGGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCAT-CAGGGGCCACAAGAG-CAGAGAGCTCTTCAGCCCCATGTTCTCCTGGACGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCTATTTGCTAAGCAGCGTCCTGAGCCACT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109292771 441 - 110113093 GGGCGTCTCCCCCACGTGCCCCCCAGTCCCATCCTTTCCATGGGCTCCAGATGCCCACA--ACTCCAGAACACTCAATGAGACA--ACTCAGATCAGGTTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCGCGCTGTTTCAGAAGTGCCTTCTTCTCCTGGAAATGTCGACCCCAAAGCTGTCACTGGGAAACCTCTGGCCTGGCCCCCGGGAAGCGGCAGGCACGGGTTTGGGGCTGAGGCCGTCCCGGCAGCTCTGTGTCCTGCCAGACCTCAGAGCCCTCCCAT-CAGGGCCCACAAGAG-CAGAGAGCTCTTCAGCCCCATGTCCTCCTGGACGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAATCCATTTGCTAAGCAGCGTCCTGAGCCACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010110 439 - 92844088 GGGTGTCTCCCCCACGCG-CCCCCAGTCCCATCCTCTCCAC-GGCTCCAGATGCTCACA--ACCCCAGAACACTCAATGGGACA--ACTCCGAGCGGGCTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACTCCACTTCAGAAGTGCCTCCCTCTCCTGGGAATGTCGACCCTGAAGCTCTCACTGGGAAACCTCTGGCCTGGCCCCCGGGAAGCAACAGGCATGGGTTTGGGGCTGAGGCCGT-CCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGGGGCGACAAGAGCCAGAGAGCTCTTCAGCCCCATGTCCTCCTGGATGAATTAAAAGCACGACCCATCCTAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAAACTCCAGACCAACCCATTTGCTAAGCAGCGTCCTGAGTCACT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95659368 438 + 96509753 GGGTGTCTCCCCCACGCG-CCCCCAGTCCCATCCTCTCCAC-TGCTCCAGATGCTCACA--ACCCCAGAACACTCAATGGGACA--ACTCCGAGCGGGCTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACTCCACTTCAGAAGTGCCTCCCTCTCCTGGGAATGTCGA-CCCGAAGCTCTCACTGGGAAACCTCTGGCCTGGCCCCCGGGAAGCAACAGGCATGGGTTTGGGGCTGAGGCCGT-CCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGGGGCAACAAGAGCCAGAGAGCTCTTCAGCCCCATGTCCTCCTGGATGAATTGAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAAACTCCAGACCAACCCATTTGCTAAGCAGCGTCCTGAGTCACT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16110255 432 - 16982598 GGGTGTCTCCCCAACGCG-CCCCCAGTCCCATCCTCTCCAC-GGCTCCAGATGCTCACA--ACCCCAGAACACTCAATGGGACA--ACTCCGAGCGGGCTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACTCCACTTCAGAAGTGCCTCCCTCTCCTGGGAATGTCGACCCCGAAGCTCTCACTGGGAAACCTCTGGCCTGGCCCCCGGGAAGCAACAGGCATGGGTTTGGGGCTGAGGCCGT-CCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGG-------AGAGCCAGAGAGCTCTTCAGCCCCATGTCCTCCTGGATGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAAACTCCAGACCAACCCATTTGCTAAGCAGCGTCCTGAGTCACT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958232 440 - 3785965 GGGTGTCTCCCCTACGCG-CCCCCAGTCCCATCCTCTCCAC-GGCTCCAGATGCTCACA--ACCCCAGAACACTCAATGGGACA--ACTCTGAGTGGGCTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACTCCACTTCAGAAGTGCCTCCCTCTCCTGGAAATGTCGACCCTGAAGCTCTCACTGGGAAACCTCTGGCCTGGCCCCCGGGAAGCAACAGGCATGGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGGGGCGACAAGAGCCAGAGAGCCCTTCAGCCCCGTGTCCTCCTGGATGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCCATTCGCTAAGCAGCGTCCTGAGTCACT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626019 440 - 90373283 GGGTGTCTCCCCCACGCG-CCCCCAGTCCCATCCTCTCCAC-GGCTCCAGATGCTCACA--ACCCCAGAACACTCAATGGGACA--ACTCAGAGCGGGCTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACTCTATTTCAGAAGTGCCTCCCTCTCCTGGAAATGTCGACCCTGAAGCTTTCACTAGGAAACCTCTGGCCTGGCCCCTGGGAAGCAACAGGCATGGGTTTGGGGCTGAGGCCACCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGGGGCGACAAGAGCCAGAGAGCCCTTCAGCCCCACGTCCTCCTGGATGAATTAAAAGCACGACCCACCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCCATTTGCTAAGCAGCGTCCTGAGTCACT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5515448 440 + 6149316 GGGTGTCTCCCCCACGCG-CCCCCAGTCCCATCCTCTCCAC-GGCTCCAGATGCTCACA--ACCCCAGAACACTCAATGGGACA--ACTCCGAGCGGGCTACAGAGAAAGAAAAGCCACACAAGCTCACCAAGGGCACTCCACTTCAGAAGTGCCTCCCTCTCCTGGAAATGTCGACCCCGAAGCTCTCACTGGGAAACCTCTGGCCTGGCCCCCGGGAAGCAACAGGCATGGGTTTGGGGCTGAGGCCATCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGGGGCGACAAGAGCCAGAGAGCCCTACAGCCCCATGTCCTCCTGGATGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAAAGTCTAACCCTCCATTTTCCAGACTCCAGACCAACCCATTTGCTAAGCAGCGTCCTGAGTCACT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4736983 422 - 5823884 GGGTGTCTCCCCCACGCG-CCCCCAGTCCCATCCTCTCCAT-GGCTCCAGATGCTCACA--ACCCCAGAACACTCGATGGGACA--ACTCAGAGCAGGCTA---------------CTCACAAGCTCACCAAGGGCACTCTATTTCAGAAGCGCCTC---CTCCTGGAAATGTCGACCCTGAAGCTCTCGCTGGGAAATCTCTGGCCTGGCCCCCGGGAAGTAACAGGCGTGGGTCTGGGGCTGAGGCCATCCCAGCAGCTCTGTGGCCTGCCAGACCTCAGAGCACTCCCGT-CAGGGGCGACAAGAGCCAGAGAGCTCTTCAGCCCCATGTCCTCCTGGATGAATTAAAAGCACGACCCATCCCAGCTTCAGACAACAAAATGTCTAACCCTCCATTTCCCAGACTCCAGACCAACCCATTTGCTAAGTAGCGTCCTGAGTCACT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450052 379 + 159171411 GGGCACCTCCCCAACACA-C-------CCCACCCTCTCCATGGGCTGCAGATGCCCATG--ACCCAAGAACACTCAACAGGATG--ACT------------CAAAGAAAGAAAAGCCACACAAACTCACCCA-GGCACGTTATTTCAGAAGTACC-CATCCTCCTGGAAGTGCTGACCCCAGAGCTCTCACTGGGAAACCTCTGGCTGGG-CCCCCAGAAGCAACAGATGCGGGTTTGGGGCCGAGGCTGTCCCAGCAGTC--------------------GCGCACTCCCAT-CAGG-GCAGCAAGAGCC--AGAGCTCCTCA-CCCCATTTCCTCCTGGATGAGTTAAA---------------AGCTTCAGAC-ACAAAAACCCTAACCCTCCATGTCCCAGACTCCAGACCAACCCATTTGCGACGCAGCCTCCTGAGCCACT i calJac3.chr5 I 7 C 0 s saiBol1.JH378156 15567885 407 + 16356641 -GGCGCCTCCCCAACACG-C-------CCCAGCCTCTCCATGGGCTGCGGATGCCCATG--ACCCCAGAACACTCAACAGGACG--ACTCAGAGCGGCTCACAGAGAAAGAGAAGCCACACAAACTC-CCCA-GGCACGTCACTTCA-------------------GAAGTGCTGACCCCACAGCTCTCACTGGGAAACCTCTGGCTGGG-CCCCCAGAAGCAACAGACGCGGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTCTGGCCTGCCAGACCTCAGCGCGCTCCCAT-CAGG-GCAGCAAGAGCC--AGGGCTCCTCA-CCCCATTTCCTCCCAAATGAATTAAAAGTGTGACCCATCCCAGCTTCAGACAACAAAAACTCTAACCCTCCATGTCCCAGACTCCAGGCCGACCCACTTGCTAGGCAGCCTCCCGAGCCGCT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 416745 425 + 1231380 GGGCGTCT-CCCAACACG-C-------CCCACCCTCTCCATGGGCTGCAGATGCCCATG--ACCCCAGAACACTCAACAGGGCG--ACTCAAAGAGGGCTACAGAGAAAGAAAAGCCACACAAACTCACCCA-GGCATGTTACTTCAGAAGTGCC-CATCCTCCTGGAAGTGCTGACCCCAGAGCTCTCACTGGGAAACCTATGGCTGGG-CCCCCAGAAGCAACAGACGCGGGTTTGGGGCTGAGGCCGTCCCAGCAGCTCTCCGGCCTGCCAGACCTCAGCGCACTCCCAT-CAGG-GCAGCAAGAGCC--AGAGCTCCTCA-CCCCATTTCCTCCTGGATTAAATAAAAGCATGACCCGTCCCAGCTTCAGGCAACAAAAACTCTAACCCTCCATGTCCCAGG-TCCAGACCAGCCCACTTGCTACGCAGCCTCCTGAGCCAGT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1974530 426 + 11732439 GGGCGTCTCCCCAACACG-C-------CCCACCCTCTCCATGGGCTGCAGATGCCCATG--ACCCTAGAACACTCAACAAGACG--ACTCAGAGCGGGTTACAGAGAAAGAAGAGCCACACAAAGTCACCCA-GGCACGTTACTTCAGAAGTGCC-CATCCTCCTGGAAGTGCTGGCCCCAGAGGTCTCACTGGG-AACCTCTGGCTGGG-CCCCCAGAAGCAACAGACTCGGGTTTGGGGCTGAGGCCATCCCAGCAGCTCTCCAGCCTGCCAGACCTCAGCGCACTCCCAT-CAGG-GCAGCAAGAGCC--AGAGCTCCTCA-CCCCATTTCCTCCTGGATGAATTAAAAGCGTGACCCATCCTAGCTTCAGACAACGAAAACTCTAACCCTCCATGTCCCAGACTCCAGACCAACCCATTTGCTACGCAGCCTCCTGAGCCACT i aotNan1.NW_018500483v1 C 0 I 205 s otoGar3.GL873542 22186681 296 + 22939663 -----------CCAGGGA-CCTC----TGTGTCCTC-CCACAGGCTCTTGACACCCCCAAGATCCTGGCACACCCACCGAGACATGCCTCTAAATGGG-TGCAGAGAAAGCACAGG---GCAAATTCACTCAGGGCCAATTATCTCAGAATCCCCTTA----------------------------CTTGCTGGG-------------------------------------------------------------------------------------------CTCCCATCCAGGGACACCAGGACCCAGAGGGCTCTTCAGCCCTATTTCCTTCTGGACAGCTTGAAAGTGTGGCCCATCCCAGATTCA---AGAGAGGGATCCAATCCTGC--TTCCCTAACTCCAGAACAACCCACTGGCTAAGCCTCCTCAGGG------ i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I a score=121455.000000 s hg38.chr20_KI270871v1_alt 52868 12 + 58661 CCCTCCTCCAGC s panTro5.chr20 65629061 12 + 66533130 CCCTCCTCCAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388023 12 + 62195757 CCCTCCTCCAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802623 12 - 1017659 CCCTCCTCCAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293212 12 - 110113093 AACTCCTCCAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010549 12 - 92844088 CCCTCCTCCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95659806 12 + 96509753 CCCTCCTCCAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16110687 12 - 16982598 CCCTCCTCCAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958672 12 - 3785965 CCCTCCTCCAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626459 12 - 90373283 CCCTCCTCCAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5515888 12 + 6149316 CCCTCCTCCAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737405 12 - 5823884 CCCTCCTCCAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450431 12 + 159171411 TCATCCTCCAGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568292 12 + 16356641 CCCTCCTCCAGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 417170 12 + 1231380 TCGTCCTCCAGC i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22186977 11 + 22939663 -CTTCCTCCAGC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=1118.000000 s hg38.chr20_KI270871v1_alt 52880 1 + 58661 -T s panTro5.chr20 65629073 1 + 66533130 -T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388035 1 + 62195757 -T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802635 1 - 1017659 -T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293224 1 - 110113093 -T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010561 1 - 92844088 -T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95659818 1 + 96509753 -T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16110699 1 - 16982598 -T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958684 1 - 3785965 -T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626471 1 - 90373283 -T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5515900 1 + 6149316 -T i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737417 1 - 5823884 -T i colAng1.NW_012114444v1 C 0 C 0 s cebCap1.NW_016107870v1 417182 1 + 1231380 -T i cebCap1.NW_016107870v1 C 0 I 359 s otoGar3.GL873542 22186988 1 + 22939663 A- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15568304 0 + 16356641 C e calJac3.chr5 57450443 0 + 159171411 C a score=1730253.000000 s hg38.chr20_KI270871v1_alt 52881 312 + 58661 CTGTGGGTACAGCTTTCTCAGGCTAAAGGGGAAACAGAGGGGCTTCTCAGGGCCCACCCGCCTTGTGCTGGCCGCCTCCC----TCACACC-CCCTCACCCAGGAGCCATCAAGGACAGAGCCTCCTCCTGCAGGG-CCCA-CACTCCATCACCCGCTGCTGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACTAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCACACGGGCTGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCG s panTro5.chr20 65629074 312 + 66533130 CTGTGGGTACAGCTTTCTCAGGCTAAAGGGGAAACAGAGGGGCTTCTCAGGGCCCGCCCGCCTTGCGCTGGCCGCCTCCC----TCACACC-CCCTCACCCAAGAGCCATCAAGGACAGAGCCTCCTCCTGCAGGG-CCCA-CACTCCATCACCCACTGCTGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACTAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCACACGGGCTGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388036 312 + 62195757 CTGTGGGTACAGCTTTCTCAGGCTAAAGGGGAAACAGAGGGGCTTCTCAGGGCCCGCCCGCCTTGCGCTGGCCGCCTCCC----TCACACC-CCCTCACCCAGGAGCCATCAAGGACAGAGCCTCCTCCTGCAGGG-CCCA-CACTCCATCACCCGCTGCTGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACTAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCACACGGGCTGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802636 311 - 1017659 CTGTGGGTACAGCTTTCTCAGGCTAAAGGGGAAACAGACGGGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCCGCCTCCC----TCACA-C-CCCTCACCCAGGAGCCATCAAGGACAGAGCCTCCTCCTGCAGGG-CCCA-TACTCCATCACCCGCTGCTGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACTC---------ACTCCGAAATCAACAGAGAAAGCTCGGCACACGGGCTGGTGAGC--GTAGGGGTCGCACGCAGAG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293225 312 - 110113093 CTGTGGGTACAGCTTTCTCAGGCCAAAGGGGAAACAGACGGGCTTCCCAGGGCCCATCCGCCTTGCGCTGGCCGCCTCCC----TCACACC-CCCTCACCCAGGAGCCATCAAGGACAGAGCCTCGTCCCGCCGGG-CCCA-CGCTCTATCACCCGCTGCTGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAAGCAACAGAGAAATCTCGGCACACGGGCTGGTGAGC--GTAGGGATCGCACGCAGGG---GCCAGCGGGAGCCCTTTCCAGAGAGTTCCTCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010562 312 - 92844088 CTGTGGGTACGGCTTTCTCAGGCTGCA-GGGAAACAGACAGGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCCGCCTCCA----GCACGCCGCCCTCACCCA-TAGCCATCAAGGACAGAGCCTCGTCCTGCAGGG-CCCGCCACTCTATCACCCGCTGCGGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCAAACAGGCCGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCC i rheMac8.chr10 C 0 I 12 s macFas5.chr10 95659819 312 + 96509753 CTGTGGGTACGGCTTTCTCAGGCTGCA-GGGAAACAGACAGGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCCGCCTCCA----GCACGCCGCCCTCACCCA-TAGCCATCAAGGACAGAGCCTCGTCCTGCAGGG-CCCGCCGCTCTATCACCCGCTGCGGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCAAACAGGCCGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16110700 312 - 16982598 CTGTGGGTACGGCTTTCTCAGGCTGCA-GGGAAACAGACAGGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCCGCCTCCA----GCACGCCGCCCTCACCCA-TAGCCATCAAGGACAGAGCCTCATCCTGCAGGG-CCCGCCGCTCTATCACCTGCTGCGGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCAGCAAACAGGCCGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958685 312 - 3785965 CTGTGGGTACAGCTTTCTCAGGCTGCA-GGGAAACAGACAGGCTTCTCAGGGCCCACCTGCCTTGCGCTGGCCGCCTCCA----GTACGCCGCCCTCACCTG-TAGCCATCAAGGACAGAGCCTCGTCCTGCAGGG-CCCACCGCTCTATCACCCGCTACGGAGGCCAGCGGTTGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCAAACAGGCCGGTGAGC--TTAGGGGTCGCACGCAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626472 311 - 90373283 CTGTGGGTACGGCTTTCTCAGGCTGCAGGGGAAACAGACGGGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCCGCCTCCA----GCACACCCTCCTCACCCA-TAGCCATCAAGGACAGAGCCTTGTCCTGCAGGG-CCTGCCGCTCTATCACCCGCTGCGGAGGCCAGTGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGTTCGGCAAACAGGCCGGTGAGC--ATACGGGTCGCACACAGGG---GCCAGCGGGAGCCATTTCC--AGAGTTCCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5515901 312 + 6149316 CTGTGGGTACGGCTTTCTCAGGCTGCA-GGGAAACAGACAAGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCCGCCTCCA----GCACGCCGCCCTCACCCA-TAGCCATCAAGGACAGAGCCTCGTCCTGCGGGG-CCCGCCGCTCTATCACCCGCTGCGGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACAGAGAAAGCTCGGCAAACAGGCCGGTGAGC--ATAGGGGTCGCACACAGGG---GCCAGCGGGAGCCATTTCCAGAGAGTTCCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737418 318 - 5823884 CTGCGGGTACGGCTTTCTCAGGCTGCAGGGGAAACAGACGGGCTTCTCAGGGCCCACCCGCCTTGCGCTGGCGGCCTCCAGCACGCACGCCCCCCTCGCCCA-TAGCCATCAAGGACAGAGCCCCGTCCTGCAGGGCCCCGCCGCTCTATCACCTGCTGCTGAGGCCAGCGGTCGGCAGGGCCCTGCCAC-TCAGAGCCCACCAGGGAGGCAGGAACCAGAACCC---------ACTCCGAAATCAACACAGCAAGCTCGGCAAACAGGCCGGTGAGC--GTAGGGGTCGCACGCAGGG---GCCAGTGGGAGCCATTTCCAGAGAGTTCCTCA i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22186989 262 + 22939663 CCTTAGACACAGCTTTCTTGAGGCATGTGAGGGACAGA-GGGCTT-----------------------TAGACGACCCCA----CCAGG--------------AACCGAGAAAGGTTGAAAGCCCCTTTTGCAGGG-CAAA------------------TTGAG--CTGGGGTCCACAGGGATGTGTCACTTCAGAGCTTCCTCAG--AGCAGAGGTCAGAATGCTGCATTTCAACTAAGGGAGC--CTGAGGGAGCTGGGTAGGAAGCCTGGTCAGTGAGAGAGGGCTGGGCACAGGGCAAGCCA-----AGTCACTTCCAGAATGTTCTCTG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15568304 0 + 16356641 C e calJac3.chr5 57450443 0 + 159171411 C a score=39996.000000 s hg38.chr20_KI270871v1_alt 53193 8 + 58661 GCGACAAG s panTro5.chr20 65629386 8 + 66533130 GGGACAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388348 8 + 62195757 GGGACAAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802947 8 - 1017659 GGGACAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293537 8 - 110113093 GGGACAAG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95660131 8 + 96509753 GGGATAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111012 8 - 16982598 GGGATAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2958997 8 - 3785965 GGGATAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626783 8 - 90373283 GGGATAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516213 8 + 6149316 GGGATAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737736 8 - 5823884 GGGATAAG i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22187251 8 + 22939663 GGGACAGT i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15568304 0 + 16356641 C e calJac3.chr5 57450443 0 + 159171411 C e rheMac8.chr10 92010874 12 - 92844088 I a score=287818.000000 s hg38.chr20_KI270871v1_alt 53201 47 + 58661 CTCAGATCTGCAGGCCCCTCCTCCTTCGACCTTGCATCTGTTAGGCG s panTro5.chr20 65629394 47 + 66533130 CTCAGATCTGCAGGCCCCTCCTCCTTCGACCTTGCATCTGTTAGGCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388356 47 + 62195757 CTCAGATCTGCAGGCCCCTCCTCCTTCGACCTTGCATCTGTTAGGCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 802955 47 - 1017659 CTCAGATCTGCAGGCCCCTCCTCCTTCGAACTTGCATCTGTTAGGCG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293545 47 - 110113093 CTCAGATCTGCAGGCCCCTCCTCCTTCGACCTTGGATCTGTTAGGCG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010886 47 - 92844088 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTGTTAGCCA i rheMac8.chr10 I 12 C 0 s macFas5.chr10 95660139 47 + 96509753 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTGTTAGCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111020 47 - 16982598 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTGTTAGCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959005 47 - 3785965 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTATTAGCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626791 47 - 90373283 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTGTTAGCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516221 47 + 6149316 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTATTAGCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737744 47 - 5823884 CTCAGATCTGCAGACCCCTCCTCCTTCGACCTTGGACCTGTTAGCCG i colAng1.NW_012114444v1 C 0 C 0 s otoGar3.GL873542 22187259 46 + 22939663 CTCAGATCTACGGGTCCCTCTTTTTTCTACCTTG-ATCCAATAAATG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15568304 0 + 16356641 C e calJac3.chr5 57450443 0 + 159171411 C a score=-9233.000000 s hg38.chr20_KI270871v1_alt 53248 1 + 58661 ------------------T s panTro5.chr20 65629441 1 + 66533130 ------------------T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388403 1 + 62195757 ------------------T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803002 1 - 1017659 ------------------T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293592 1 - 110113093 ------------------T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010933 1 - 92844088 ------------------G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660186 1 + 96509753 ------------------G i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111067 1 - 16982598 ------------------G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959052 1 - 3785965 ------------------G i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626838 1 - 90373283 ------------------G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516268 1 + 6149316 ------------------G i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737791 1 - 5823884 ------------------G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450443 1 + 159171411 ------------------T i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568304 1 + 16356641 ------------------T i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22187305 19 + 22939663 CTTTGGCTTTTATCTGCAG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181128040 987 + 182113224 I e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=1159829.000000 s hg38.chr20_KI270871v1_alt 53249 181 + 58661 GTTGAACAGGTGCCGCCCACCCTACCCAGGA---CGCGCTTCCTCCTCTGAGG---------ATGTCCAGGGCCCTCCCCTCCACAAAGGCACCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAAGTGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCAAAGGGCATCCGCGTTCCG--------GGCA--CCGCCGTTTCC s panTro5.chr20 65629442 181 + 66533130 GTTGAACAGGTGCTGCCCACCCTACCCAGGA---GGCGCTTCCTCCTCTGAGG---------ATGTCCAGGGCCCTCCCCTCCACAAAGGCACCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAAGTGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCAAAGGGCATCCGCGTTCCG--------GGCA--CCGCCGTTTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388404 181 + 62195757 GTTGAACAGGTGCTGCCCACCCTACCCAGGA---GGCGCTTCCTCCTCTGAGG---------ATGTCCAGGGCCCTCCCCTCCACAAAGGCACCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAAGTGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCAAAGGGCATCCGCGTTCCG--------GGCA--CCGCCGTTTCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803003 181 - 1017659 GTTGAACAGGTGCTGCCCACCCTACCCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGGCCCTCCCCTCCACAAAGGCACCGTTTTGAGA--CTCCCGGAGCTGTCAGCCAAGTGTTGTCGGAAGGCAGAGCCGAGCTCCAGCCCTGCAAAGGGCATCCGCGTTCCG--------GGCA--CCGCCGTTTCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293593 180 - 110113093 GTTGAGCAGGTGCTGCCCACCCTACGCAAGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCTGAGTGTTGTCGGAGGGCAGAGCTGAGCTCCAGCCCTGCAAAGGGCATCCGCGTTCCG--------GGCA--CCGCCGTTTCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92010934 180 - 92844088 GTCGAAGAGGTGCTGCCCACCCTATGCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAAGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAACGGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCACAGGGCATCCCCGTTCCG--------GACA--CAGCTGTTTCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660187 180 + 96509753 GTCGAAGAGGTGCTGCCCACCCTATGCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAACGGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCACAGGGCATCCCCGTTCCG--------GACA--CAGCTGTTTCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111068 180 - 16982598 GTCGAAGAGGTGCTGCCCACCCTATGCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAACGGTTGTCGGAAGGCAGAGCTGAGCTCCAGCTCTGCATAGGGCATCCCCGTTCCG--------GACA--CAGCTGTTTCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959053 180 - 3785965 GTCGAAGAGGTGCTGCCCACCCTATGCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAACGGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCACAGGGCATCCCCGTTCCG--------GACA--CAGCTGTTTCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89626839 180 - 90373283 GTCGAAGAGGTACTGCCCACCCTACGCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAGCTGCTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCACAGGGCATCCCCGTTCTG--------GACA--CAGCTATTTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516269 188 + 6149316 GTCGAAGAGGTGCTGCCCACCCTATGCAGGA---CGCGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAAAGGCGCCGTTTTGAGA--CTCCCAGAGCTGTCAGCCAACGGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCACAGGGCATCCCCGTTCCGGACACAGCGACA--CAGCTGTTTCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737792 180 - 5823884 GTTGAAGAGGTGCTGCCCACCCTATGCAGGA---CACGCTTCCTCCTCTGAGC---------ATGTCCAGGG-CCTCCCCTCAACAGAGGCGCCGTTTTGAGA--CTCCCAGAGCGGTCAGCCAACTGTTGTCGGAAGGCAGAGCTGAGCTCCAGCCCTGCACAGGGCATCCCGGTTCCG--------GACA--CAGCCGTTTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450444 156 + 159171411 GTTGAGCGGGTGCTGCCCACCATACACAGGAGGCTGCGCCTCCTCCTCCGAGC---------ACGTGCAGGG-CCTCCCCTCAGC-AAGGTGCTGCTGGGCGA--CCCCCGG-GCTGCCAG-----TGCTGT-GAAAGGCAGAGCGGAGCTCCAGCCCTGCAGAGG----------------------CACA--CGGCTG----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568305 159 + 16356641 GTTGGAGGGGTGCTGCCCACCACACACAGGAGGCCGCGCCTCCTCCGCCGACC---------ACGTGCACGG-CCT-CCCTCAGC-GAGGCGCCGCT-GGCGA--CCCCCGG-GCTGCCAG-----GGTTGT-GGAAGACAGAGCGGAGCTCCAGCCCTGCAGAGG----------------------CACA--CGGCCGGGCCA i saiBol1.JH378156 C 0 I 31 s otoGar3.GL873542 22187324 119 + 22939663 GTTGGCCA-GTGTTGCCCCATAAATGAGGAAG--CCCTCTCCCTCCTCT----------------TCATGGA-CCTCCT---------------------GGA--ACCCCAGCCCTG---------------CAGAAGGAAAGGCTGCGCTC-----------GGCACCTCCACactctg--------ggga--cagc------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129027 174 + 182113224 GTTAGACAGGTGCTAC------------------TGGGTTtcctcctccaaatgacgacttggtgcctggtg-cgtcactgtgagtgaggcgctgtttgaagaagctcctggagctgtcagcaaattgttgtctgaaagcaaagcccagttccagccatgaaagggaaagggccatgctt--------ggcaggcatccac---- i mm10.chr2 I 987 C 0 e aotNan1.NW_018500483v1 1974956 205 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=177307.000000 s hg38.chr20_KI270871v1_alt 53430 29 + 58661 GCTCGACGCTCCGTGCTAAAGGCGGCCTC s panTro5.chr20 65629623 29 + 66533130 GCTCGACGCTCCGTGCTAAAGGCGGCCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388585 29 + 62195757 GCTCGACGCTCCGTGCTAAAGGCGGCCTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803184 29 - 1017659 GCTCAACGCTCCGTGCTAAAGGCGGCCTC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293773 29 - 110113093 GCTCGACGCTCCGTGCTAAAGGCGGCCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011114 29 - 92844088 GCTCGCCGCTCCGTGCTAAAGGCGGCGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660367 29 + 96509753 GCTCGCCGCTCCGTGCTAAAGGCGGCGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111248 29 - 16982598 GCTCGCCGCTCTGTGCTAAAGGCGGCGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959233 29 - 3785965 GCTCGCCGCTCCGTGCTAAAGGCGGCGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627019 29 - 90373283 GCTCGCCGCTCTGTGCTAAAGGCGGCCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516457 29 + 6149316 GCTCGCCGCTCCGTGCTAAAGGCGGCAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4737972 29 - 5823884 GCTGGCCGCTCCGTGGTAAAGGCGGCCTC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450600 2 + 159171411 ---------------------------TC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568495 29 + 16356641 GCCCCACACTTCCCGCTAAAGGCGGCCTC i saiBol1.JH378156 I 31 C 0 s aotNan1.NW_018500483v1 1975161 29 + 11732439 GCTCCACGCTCCGCGCTAAAGGCGGCCTC i aotNan1.NW_018500483v1 I 205 I 142 s otoGar3.GL873542 22187443 19 + 22939663 actcagcactctgtcctgg---------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129201 17 + 182113224 acacagaggacagtgct------------ i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=135043.000000 s hg38.chr20_KI270871v1_alt 53459 29 + 58661 ATGGCTGGGCGCGTGTCGGTGCTGAGGCG s panTro5.chr20 65629652 29 + 66533130 ATGGCTGGGCGCGTGTCGGTGCTGAGGCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388614 29 + 62195757 ATGGCTGGGCGCGTGTCGGTGCTGAGGCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803213 29 - 1017659 ATGGCTGAGCAAGTGTCGGTGCTGAGGCG i gorGor5.CYUI01015750v1 C 0 I 164 s nomLeu3.chr13 109293802 18 - 110113093 ATCGCTGGGC-CGTGTCGG---------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011143 29 - 92844088 ATTGCCGGGCCCGTGTCGGCGCTGAGGCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660396 29 + 96509753 ATTGCCGGGCCCGTGTCGGCGCTGAGGCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111277 29 - 16982598 ATTGCCGGGCCCGTGTCGGCGCTGAGGCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959262 29 - 3785965 ATTGCCGGGCCCGTGTCGGCGCTGAGGCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627048 29 - 90373283 ATTGCCGGGCCCGTGTCGGCGCTGAGGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516486 29 + 6149316 ATTGCCGGGCCCGTGTCGGCGCTGAGGCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738001 29 - 5823884 ATCGCCGGGCCCGTGTCCGCGCGGAGGCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450602 26 + 159171411 C---CTGAGCCCGCGTTGGGGCTGACGTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568524 29 + 16356641 CCTGCTGCACCCGCGTTAGGGCTGACGCG i saiBol1.JH378156 C 0 C 0 s mm10.chr2 181129218 13 + 182113224 ----------------CACTGTGAAGGGG i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1975190 142 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187462 0 + 22939663 C a score=638159.000000 s hg38.chr20_KI270871v1_alt 53488 138 + 58661 TCCCGGCGGGTCCTCTGCTGCCGTCCCGAGGCGGCCCGGCGGGTTCTCTGGCGCG-----GTCTGCGTGGAAA---------CTAGA---------AGCTTGCACTGCAGCTCT-------TTCACAGCTTAAGGGGTTCCCTGG-TAAA---ACCTGCCCACAGTGGTTTC s panTro5.chr20 65629681 138 + 66533130 TCCCGGCGGGTCCTCTGCTGCCGTCCCGAGGCGGCCCGGCGAGTTCTCTGGCGCG-----GTCCGCGTGGAAA---------CTAGA---------AGCTTGCACTGCAGCTCT-------TTCACAGCTTAAGGGGTTCCCTGG-TAAA---ACCTGCCCACAGTGGTTTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388643 138 + 62195757 TCCCGGAGGGTCCTCTGCTGCCGTCCCGAGGCGGCCCGGCGAGTTCTCTGGCGCG-----GTCCGCGTGGAAA---------CTAGA---------AGCTTGCACTGCAGCTCT-------TTCACAGCTTAAGGGGTTCCCTGG-TAAA---ACCTGCCCACAGTGGTTTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803406 138 - 1017659 TCCCGGCGGGTCCTCTGCTGAGGTCCCGAGGCCTCCCGGCGGGTTCTCTGGCGCG-----GTCCGCGTGGAAA---------CTAGA---------AGCCTGCACTGCAGCTCT-------TTCACAGCTTAAGGGGTTCCCTGG-TAAA---ACCTGCCCACTGTAGTTTC i gorGor5.CYUI01015750v1 I 164 C 0 s nomLeu3.chr13 109293820 115 - 110113093 -----------------------TCCCGAGGCGTCCCGGCGGGTTCTCCGGTGCG-----GTCCGCGTGGAAA---------CTAGA---------AGCTTGCACTGCAGCTCT-------TTCACAGCTTTAGGGGTTCATTGG-TAAA---ACCTGCCCACAGCGGTTTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011172 105 - 92844088 ---------------------------------TCCCGGCGGGTTCTCTGGTGCG-----GTCTGCGTGGACA---------CTTGA---------CGCTTGCACTGCAGCTCT-------TTCACGGCTTCCGGGGTTCACTGG-AAAA---ACCTACCCACAGTGGTTTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660425 105 + 96509753 ---------------------------------TCCCGGCGGGTTCTCTGGTGCG-----GTCTGCGTGGACA---------CTTGA---------CGCTTGCACTGCAGCTCT-------TTCACAGCTTCCGGGGTTCACTGG-AAAA---ACCTACCCACAGTGGTTTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111306 105 - 16982598 ---------------------------------TCCCGGCGGGTTCTCTGGTGCG-----GTCTGCGTGGACA---------CTTGA---------CGCTTGCACTGCAGCTCT-------TTCACAGCTTCCGGGGTTCACTGG-AAAA---ACCTACCCACAGTGGTTTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959291 105 - 3785965 ---------------------------------TCCCAGCGGGTTCTCTGGTGCG-----GTCTGCGTGGACA---------CTCGA---------CGCTTACACTGCAGCTCT-------TTCACGGCTTCCGGGGTTCACTGG-AAAA---ACCTACCCACAGTGGTTTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627077 104 - 90373283 ---------------------------------TCCCGGCGGGTTCTCTGGTGCG-----GTCGGCGTGGACA---------CTCGA---------CGCTTGCGCTGCAGCTCT-------TTCACGGCTTACGGGGTTCACTGG-AAAA---ACCTACCCACAGTGG-TTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516515 105 + 6149316 ---------------------------------TCCCGGCGGGTTCTCTGGTGCG-----GTCTGCGTGGACA---------CTCGA---------CGCTTGCACTGCAGCTCT-------TTCACGGTTTCCGGGGTTCACTGG-AAAA---ACCTACCCATAGTGGTTTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738030 104 - 5823884 ---------------------------------TCCCAGCGGGTTCTCTGATGCG-----GTCTGCGTGGACA---------CTCGA---------CGCTTACACCGCAG--CC-------TTCACGGCTTACGGGGTTCACTGGAAAAA---ACCTGCCCACAGTGGTTTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450628 110 + 159171411 ---------------------------------TCCTGGTGGGTTCTCCGGTGCA-----GCCCGCGTGAAAA---------CCAGA---------AGCCTGCATCGCTGCTCTGTCCTCCTCCACAGCCTCGGCGGCTCATGGG-TAAA---ACC--CTCACTGCTGTGTT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568553 111 + 16356641 ---------------------------------TCCTGG-GGGTTCTCTGGCGCA-----GCCCACGTGGAAA---------CCAGA---------AACTTGCCCCGCTGCTCC-TCCTCCTACACGGCCTCCGCGGCTCTCGGT-GAAACCTGCC--CTCACTGCTGTGTC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22187462 116 + 22939663 -----------------------------gccatcctgaggtggt-ttggatgca-----ctctgtgtggaagccaAATGTTCTGGA---------GGCTTACACGGCAGTTTG-------GGCACAGTCTAAGAGGTACACAGG-TAAA---ACATGCCC-CAATGGTGTT i otoGar3.GL873542 C 0 I 2 s mm10.chr2 181129231 121 + 182113224 --------------------------------GCTCAGCCAAGCCAACTAACTCATCCCCGTCTGGGTAGAAA---------CCAGATGTCTACAGGGCTTGCTCAGCAGTTCC-------CCTGCAGCCTGGGGGACTTACTGG-TAAAC--ACCTGCACACTATATTTTT i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1975190 142 + 11732439 I e cebCap1.NW_016107870v1 417183 359 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=744042.000000 s hg38.chr20_KI270871v1_alt 53626 68 + 58661 TCAAGCCGAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACACGCCGGAAGCCA---- s panTro5.chr20 65629819 68 + 66533130 TCAAGCCGAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388781 68 + 62195757 TCAAGCCGAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803544 68 - 1017659 TCAAGCCGAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCG---- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109293935 68 - 110113093 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCTGGAAGCCA---- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011277 68 - 92844088 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660530 68 + 96509753 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111411 68 - 16982598 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959396 68 - 3785965 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627181 68 - 90373283 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCGACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516620 68 + 6149316 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGATGCTGGGA-ACATGCCGGAAGCCA---- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738134 68 - 5823884 TCAAGCCAAAGATCATTCCTGTCCTCCAAGCCTCAACCCTCAGGACGCTGGGA-ACACGCCGGAAGCCA---- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450738 65 + 159171411 TCAAGCCAAAGATCATCCC-ATCCTCCAAGCCTCAACGCTCAGGATGCTGAG---CAAGCCAGAAGCCA---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568664 68 + 16356641 TCAAGCCACAGATCGTCCCTGTCTTCCAAGCCTCAACGCTCAGGATGCTGAGA-ACATGCCAGAAGCCA---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 417542 68 + 1231380 TCAAGCCAAAAATCATTCCTGTGCTCCAAGCCTCAATGCTCAGGATGCTGAGA-ACATGCCAGAAGCCA---- i cebCap1.NW_016107870v1 I 359 I 26 s aotNan1.NW_018500483v1 1975332 68 + 11732439 TCAAGCCGAAGACCATTCCTGTCCTCCAAGCCTCAACGCTCAGGATGCTGAGA-ACATGCCAGAAGCCA---- i aotNan1.NW_018500483v1 I 142 C 0 s otoGar3.GL873542 22187580 66 + 22939663 TAAAGCCAAA-ATTGTCCCTGCCTGTCGGGTCTCACCCCTCAGGATGCTGGCA-GCAGGCAGGGAGCC----- i otoGar3.GL873542 I 2 C 0 s mm10.chr2 181129352 67 + 182113224 -CCATCCAGA-ATCATTCCTCTCCTCAACACC-CAACCTTTAGGGTGCTGTCACGCATGCT---ACTCAGTTC i mm10.chr2 C 0 C 0 e canFam3.chr24 47095500 2364 + 47698779 I a score=110004.000000 s hg38.chr20_KI270871v1_alt 53694 12 + 58661 CGAACAGGAAGA s panTro5.chr20 65629887 12 + 66533130 CGAACAGGAAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388849 12 + 62195757 CGAACAGGAAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803612 12 - 1017659 CAAACAGGAAGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294003 12 - 110113093 CAAACAGGAACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011345 12 - 92844088 CAAACAGGAAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660598 12 + 96509753 CAAACAGGAAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111479 12 - 16982598 CAAACAGGAAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959464 12 - 3785965 CAAACAGGAAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627249 12 - 90373283 CAAACAGGAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516688 12 + 6149316 CAAACAGGAAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738202 12 - 5823884 CAAACAGGAAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450803 11 + 159171411 -GGACAGGAGGA i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15568732 11 + 16356641 -GGACAGGAGGA i saiBol1.JH378156 C 0 I 2 s aotNan1.NW_018500483v1 1975400 11 + 11732439 -GGACAGGAGGA i aotNan1.NW_018500483v1 C 0 I 15 s otoGar3.GL873542 22187646 9 + 22939663 ---ACAAGAGGA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129419 12 + 182113224 CACGGAGGAAGA i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 417610 26 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=59312.000000 s hg38.chr20_KI270871v1_alt 53706 14 + 58661 CAATC--CCCCAAACT- s panTro5.chr20 65629899 13 + 66533130 CAATC--CCCCAAAC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388861 13 + 62195757 CAATC--CCCCAAAC-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803624 12 - 1017659 CAAT---CCCCAAAC-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294015 13 - 110113093 CAATC--CCCCAAAC-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011357 13 - 92844088 CAAAC--CCCCAAAC-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660610 13 + 96509753 CAAAC--CCCCAAAC-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111491 13 - 16982598 CAAAC--CCCCAAAC-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959476 13 - 3785965 CAAAC--CCCCAAAC-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627261 13 - 90373283 CAAAC--CCCCAAAC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516700 13 + 6149316 CAAAC--CCCCAAAC-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738214 12 - 5823884 CAAA---CCCCAAAC-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450816 12 + 159171411 GACA---CCCCAAAC-- i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15568745 13 + 16356641 GACAC--CCCCGAAC-- i saiBol1.JH378156 I 2 C 0 s otoGar3.GL873542 22187655 13 + 22939663 --ATCTGCCCCACAC-- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129431 11 + 182113224 -----CATCTTAAAC-T i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1975411 15 + 11732439 I e cebCap1.NW_016107870v1 417610 26 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=307051.000000 s hg38.chr20_KI270871v1_alt 53720 33 + 58661 ACCCGGCACACACAGGGCAGGCA-CCTTCGTTCC s panTro5.chr20 65629912 33 + 66533130 ACCGGGCACACACAGGGCAGGCA-CCTTCGTTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388874 33 + 62195757 ACCCGGCACACACAGGGCTGGCA-CCTTCGTTCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803636 33 - 1017659 ACCCGGCACACACAGGGCAGGCA-CCTTCGTTCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294028 33 - 110113093 ACCCGGCACACACAGGGCAGGCA-CCTTCGTTCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011370 34 - 92844088 ACCCGGCACACACAGGGCAGGCAGCCTTCGTTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660623 34 + 96509753 ACCCGGCACACACAGGGCAGGCAGCCTTCGTTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111504 34 - 16982598 ACCCGGCACACACAGGGCAGGCAGCCTTCGTTCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959489 34 - 3785965 ACCCGGCACACACAGGGCAGGCAGCCTTCGTTCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627274 34 - 90373283 ACCCGGCACACACAGGGCAGGCAGCCTTCTTTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516713 34 + 6149316 ACCCGGCACACACAGGGCAGGCAGCCTTCGTTCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738226 34 - 5823884 ACCCGGCACACACAGGGCAGGCAGCCTTCGTTCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450828 29 + 159171411 ACCCGGCATACACAGGGCAAGCA-CCTTTG---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568758 29 + 16356641 ACTGGGCACACGCAGGGCAGGCA-CCTTCG---- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 417636 33 + 1231380 ACCCAGCACACGCAGGGCAGGCA-CCTTCGTTCC i cebCap1.NW_016107870v1 I 26 I 158 s aotNan1.NW_018500483v1 1975426 33 + 11732439 ACCCAGCACACACGGGGCAGGCA-CCTTCGTTCC i aotNan1.NW_018500483v1 I 15 I 9 s otoGar3.GL873542 22187668 33 + 22939663 -CCAAGCAGGTGCAGACTAAGCAACCTTTATCCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129442 28 + 182113224 GCCAATCA-ACACAAAATC-----TCATGGTTCT i mm10.chr2 C 0 C 0 e canFam3.chr24 47095500 2364 + 47698779 I a score=75514.000000 s hg38.chr20_KI270871v1_alt 53753 30 + 58661 AAGTGAACAGCCGGCATCTCCGCGGCCGGT s panTro5.chr20 65629945 30 + 66533130 AAGTAAACAGCCGGCATCTCCGCGGCCAGT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388907 29 + 62195757 AAGT-AACAGCCGGCATCTCCGCGGCCGGT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803669 30 - 1017659 AAGTAAACAGCCGGCATCTCCGCGGCCGGT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294061 30 - 110113093 AGGTACACAGCCGGCATCACCGCGGCCGGT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011404 19 - 92844088 GGGGAAACAGC-----------CGGCCAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660657 19 + 96509753 GGGGAAACAGC-----------CGGCCAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111538 19 - 16982598 GGGGAAACAGC-----------CGGCCAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959523 19 - 3785965 GGGGAAACAGC-----------CGGCCAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627308 19 - 90373283 GGGGAAACGGC-----------CGGCCAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516747 19 + 6149316 GGGGAAACAGC-----------CGGCCAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738260 19 - 5823884 GGGGAAACAGC-----------CGGCCAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450857 13 + 159171411 -----------------TTCCGCAGCCAGT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568787 13 + 16356641 -----------------CTGCCCAGCCAGT i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22187701 26 + 22939663 AGGAGAATGGC----ATCTCCTTAGCCAGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129470 30 + 182113224 AGGAAAACGGCTGGCACTCTTGAAGCTGGC i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1975459 9 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=144053.000000 s hg38.chr20_KI270871v1_alt 53783 16 + 58661 CCCACACGACAAACAG s panTro5.chr20 65629975 16 + 66533130 CCCACACGACAAACAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388936 16 + 62195757 CCCACACGACAAACAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803699 15 - 1017659 CCCACACGAC-AACAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294091 16 - 110113093 CCCACACGACAAACAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011423 16 - 92844088 CCCACACGACAAACAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660676 16 + 96509753 CCCACACGACAAACAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111557 16 - 16982598 CCCACACGACAAACAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959542 16 - 3785965 CCCACACGACAAACAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627327 16 - 90373283 CCCACACGACAAACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516766 16 + 6149316 CCCACATGACAAACAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738279 16 - 5823884 CCCATACGACAAACAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450870 16 + 159171411 CCCACACGACAAGCAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568800 16 + 16356641 CCCACATGACGAGCAG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1975468 16 + 11732439 CCCACACGACAAGCAG i aotNan1.NW_018500483v1 I 9 C 0 s otoGar3.GL873542 22187727 16 + 22939663 TCCCCCAGACAAACAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129500 6 + 182113224 -CCACTG--------- i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=34762.000000 s hg38.chr20_KI270871v1_alt 53799 4 + 58661 GCAA s panTro5.chr20 65629991 4 + 66533130 GCAA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388952 4 + 62195757 GCAA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803714 4 - 1017659 GCAA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294107 4 - 110113093 GCAA i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95660692 4 + 96509753 GCAA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111573 4 - 16982598 GCAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959558 4 - 3785965 GCAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627343 4 - 90373283 GCAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516782 4 + 6149316 GCAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738295 4 - 5823884 GCAA i colAng1.NW_012114444v1 C 0 C 0 s aotNan1.NW_018500483v1 1975484 4 + 11732439 GCAA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22187743 4 + 22939663 GCAA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181129506 4 + 182113224 GCAA i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15568816 0 + 16356641 C e calJac3.chr5 57450886 0 + 159171411 C e rheMac8.chr10 92011439 0 - 92844088 C a score=18871.000000 s hg38.chr20_KI270871v1_alt 53803 13 + 58661 GCTTCCCACGCTC s panTro5.chr20 65629995 13 + 66533130 GCTTCCCACGCTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388956 13 + 62195757 GCTTCCCACGCTC i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109294111 13 - 110113093 GCTTCCGATGCTC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95660696 13 + 96509753 GCTTCCGACGCTC i macFas5.chr10 C 0 C 0 s aotNan1.NW_018500483v1 1975488 13 + 11732439 GCTCCCGACGCTG i aotNan1.NW_018500483v1 C 0 C 0 s mm10.chr2 181129510 13 + 182113224 GCTTCTGATACTC i mm10.chr2 C 0 I 1267 e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187747 0 + 22939663 C e manLeu1.NW_012104365v1 5516786 0 + 6149316 C e saiBol1.JH378156 15568816 0 + 16356641 C e calJac3.chr5 57450886 0 + 159171411 C e colAng1.NW_012114444v1 4738299 0 - 5823884 C e chlSab2.chr2 89627347 0 - 90373283 C e cerAty1.NW_012001373v1 2959562 0 - 3785965 C e macNem1.NW_012014244v1 16111577 0 - 16982598 C e rheMac8.chr10 92011439 0 - 92844088 C e gorGor5.CYUI01015750v1 803718 0 - 1017659 C a score=14467.000000 s hg38.chr20_KI270871v1_alt 53816 11 + 58661 GAGCCCGGGCC s panTro5.chr20 65630008 11 + 66533130 GAGCCCGGGCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388969 11 + 62195757 GAGCCCGGGCC i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109294124 11 - 110113093 GAGCCTGGGCC i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95660709 11 + 96509753 GAGCCTGGGCC i macFas5.chr10 C 0 C 0 s aotNan1.NW_018500483v1 1975501 11 + 11732439 GAGCCGGGGCC i aotNan1.NW_018500483v1 C 0 I 32 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187747 0 + 22939663 C e manLeu1.NW_012104365v1 5516786 0 + 6149316 C e saiBol1.JH378156 15568816 0 + 16356641 C e calJac3.chr5 57450886 0 + 159171411 C e colAng1.NW_012114444v1 4738299 0 - 5823884 C e chlSab2.chr2 89627347 0 - 90373283 C e cerAty1.NW_012001373v1 2959562 0 - 3785965 C e macNem1.NW_012014244v1 16111577 0 - 16982598 C e rheMac8.chr10 92011439 0 - 92844088 C e gorGor5.CYUI01015750v1 803718 0 - 1017659 C a score=4476.000000 s hg38.chr20_KI270871v1_alt 53827 5 + 58661 CCGCG s panTro5.chr20 65630019 5 + 66533130 CCGCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61388980 5 + 62195757 CCGCG i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109294135 5 - 110113093 CCGCG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95660720 5 + 96509753 TCGCG i macFas5.chr10 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975512 32 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187747 0 + 22939663 C e manLeu1.NW_012104365v1 5516786 0 + 6149316 C e saiBol1.JH378156 15568816 0 + 16356641 C e calJac3.chr5 57450886 0 + 159171411 C e colAng1.NW_012114444v1 4738299 0 - 5823884 C e chlSab2.chr2 89627347 0 - 90373283 C e cerAty1.NW_012001373v1 2959562 0 - 3785965 C e macNem1.NW_012014244v1 16111577 0 - 16982598 C e rheMac8.chr10 92011439 0 - 92844088 C e gorGor5.CYUI01015750v1 803718 0 - 1017659 C a score=2385.000000 s hg38.chr20_KI270871v1_alt 53832 69 + 58661 CTTCAACCCACGA-CCCCCGCAGGCTTCCCACGCTCGAGCCGGGGCCCCGCGCTTCAACCCACGACCCCC s panPan2.chr20 61388985 70 + 62195757 CTTCAACCCACGACCCCCCGCAGGCTTCCCACGCTCGAGCCCGGGCCCCGCGCTTCAACCCGCGACCCCC i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109294140 26 - 110113093 CTTCAACCCACCA---------------------------------TCTGGCCCTCAAC----------- i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95660725 32 + 96509753 CTCCAACCCACAA---------------------------------CCTCACCCTCAAC-AGCGGC---- i macFas5.chr10 C 0 C 0 s otoGar3.GL873542 22187747 51 + 22939663 -------------------GCAAGCTTCCCATGCTCAGACCTGGGGTTCATGCCACAACACACAACTGCT i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975512 32 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e manLeu1.NW_012104365v1 5516786 0 + 6149316 C e saiBol1.JH378156 15568816 0 + 16356641 C e calJac3.chr5 57450886 0 + 159171411 C e colAng1.NW_012114444v1 4738299 0 - 5823884 C e chlSab2.chr2 89627347 0 - 90373283 C e cerAty1.NW_012001373v1 2959562 0 - 3785965 C e macNem1.NW_012014244v1 16111577 0 - 16982598 C e rheMac8.chr10 92011439 0 - 92844088 C e gorGor5.CYUI01015750v1 803718 0 - 1017659 C e panTro5.chr20 65630024 0 + 66533130 C a score=5210.000000 s hg38.chr20_KI270871v1_alt 53901 4 + 58661 GCAG s panPan2.chr20 61389055 4 + 62195757 GCAG i panPan2.chr20 C 0 C 0 s rheMac8.chr10 92011439 4 - 92844088 GCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660757 4 + 96509753 GCAG i macFas5.chr10 C 0 C 0 s calJac3.chr5 57450886 4 + 159171411 GCAA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568816 4 + 16356641 GCAG i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109294166 0 - 110113093 C e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975512 32 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187798 0 + 22939663 C e manLeu1.NW_012104365v1 5516786 0 + 6149316 C e colAng1.NW_012114444v1 4738299 0 - 5823884 C e chlSab2.chr2 89627347 0 - 90373283 C e cerAty1.NW_012001373v1 2959562 0 - 3785965 C e macNem1.NW_012014244v1 16111577 0 - 16982598 C e gorGor5.CYUI01015750v1 803718 0 - 1017659 C e panTro5.chr20 65630024 0 + 66533130 C a score=109107.000000 s hg38.chr20_KI270871v1_alt 53905 29 + 58661 GCTTCCGACGCTCGAGCCCGGGCCCCGCA s panPan2.chr20 61389059 29 + 62195757 GCTTCCCACGCTCGAGCCCGGGCCCCGCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803718 28 - 1017659 GCTTCCGACGCTCGAGCCC-GGCCCCGCG i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92011443 29 - 92844088 GCTTCCGACGCTCGAGCCTGGGCCTCGCG i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111577 29 - 16982598 GCTTCCGACGCTCGAGCCTGGGCCTCGCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959562 29 - 3785965 GCTTCCGACGCTCGAGCCTGGGCCTCGTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627347 29 - 90373283 GCTTCCGACGCTCGAGCCTGGGCCTCGCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516786 29 + 6149316 GCTTCCGACGCTCGAGCCTGGGCCTCGCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738299 29 - 5823884 GCTTCCGACGCCCGAGCCTGGGCCTCGCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450890 29 + 159171411 GCTCCGGACGCTGGAGCCTGGGCCTTGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568820 17 + 16356641 GCTCCCGACGCTGGAGC------------ i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109294166 0 - 110113093 C e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975512 32 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187798 0 + 22939663 C e macFas5.chr10 95660761 0 + 96509753 C e panTro5.chr20 65630024 0 + 66533130 C a score=56586.000000 s hg38.chr20_KI270871v1_alt 53934 13 + 58661 CTTCAACCCACGA s panTro5.chr20 65630024 13 + 66533130 CTTCAACCCACGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389088 13 + 62195757 CTTCAACCCACGA i panPan2.chr20 C 0 I 152 s gorGor5.CYUI01015750v1 803746 13 - 1017659 CTTCAACCCACGC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92011472 13 - 92844088 CTCCAACCCACAA i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111606 13 - 16982598 CTCCAACCCACAA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959591 13 - 3785965 CTCCAACCCACAA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627376 13 - 90373283 CTCCAACCCACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516815 13 + 6149316 CTCCAACCCACAA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738328 13 - 5823884 CTCCAACCCACAA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450919 13 + 159171411 TGTCAACCCAGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568837 12 + 16356641 -GTCAACCCAGGA i saiBol1.JH378156 C 0 C 0 e nomLeu3.chr13 109294166 0 - 110113093 C e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975512 32 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22187798 0 + 22939663 C e macFas5.chr10 95660761 0 + 96509753 C a score=72358.000000 s hg38.chr20_KI270871v1_alt 53947 14 + 58661 CCTGGCCCTCAACA s panTro5.chr20 65630037 14 + 66533130 CCTGGCCCTCAACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389253 14 + 62195757 CCTGGCCCTCAACA i panPan2.chr20 I 152 C 0 s gorGor5.CYUI01015750v1 803759 14 - 1017659 CCTGGCCCTCAACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294166 1 - 110113093 -------------A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011485 14 - 92844088 CCTCGCCCTCAACA i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111619 14 - 16982598 CCTCGCCCTCAACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959604 14 - 3785965 CCTCGCCCTCAACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627389 14 - 90373283 CCTCGCCCTCAACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516828 14 + 6149316 CCTCGCCCTCAACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738341 14 - 5823884 CCTCGCCCTCAACA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450932 14 + 159171411 CCTGGCCCTGAACC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568849 14 + 16356641 CCTTGCCCTGAACC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22187798 9 + 22939663 -----CCTTCGACA i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975512 32 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e macFas5.chr10 95660761 0 + 96509753 C a score=477956.000000 s hg38.chr20_KI270871v1_alt 53961 56 + 58661 GCAGCGCAGGCCTCTCCGTCACGGCCCAGCCGCTGACCAATGGGACTGAGAATCGG s panTro5.chr20 65630051 56 + 66533130 GCAGCGCAGGCCTCTCCGTCACGGCCCAGCCGCTGACCAATGGGACTGAGAATCGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389267 56 + 62195757 GCAGCGCAGGCCTCTCCGTCACAGCCCAGCCGCTGACCAATGGGACTGAGAATCGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803773 56 - 1017659 GCAGCACAGGCCTCTCCGTCGCGGCCCAGCCACTGACCAACGGGACTGAGAATCGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294167 56 - 110113093 GCAGCGCAGGCCTCTCTGTCACGGCCCAGCCGCTGACCAATGGGACTGAGAATTGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011499 56 - 92844088 GCGGCGCAGGCCTCTCTGTCACGGCCCAGCCGCTGACCAGTGGGGCTGAGAATCGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660761 47 + 96509753 ---------GCCTCTCTGTCACCGCCCAGCCGCTGACCAGTGGGGCTGAGAATCGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111633 56 - 16982598 GCGGCGCAGGCCTCTCTGTCACGGCCCAGCCGCTGACCAGTGGGGCTGAGAATCGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959618 56 - 3785965 GCGGCACAGGCCTCTCTGTCACGGCCCAGCCGCTGACCAGTGGGGCTGAGAATCGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627403 56 - 90373283 GCGGCACAGGCCTCTCTGTCACGGCCCAGCCGCTGACCAGTGGGGCTGAGAATCGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516842 56 + 6149316 GCGGCGCAGGCCTCTCTGTCACGGCCCAGCCGCTGACCAGTGGGGCTGAGAATCGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738355 56 - 5823884 GCAGCGCAGGCCTCTCCGTCCCAGCCCAGCCGCTGACCAATGGGACTGAGAATAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57450946 55 + 159171411 GCAGCACAG-CCTCCCCATCACCGCCCAGCCGCCGACCAACCGGGCTGAGAATCGG i calJac3.chr5 C 0 I 13 s saiBol1.JH378156 15568863 56 + 16356641 GCAGCTCAGACCTCCCCGTCACCGCCCAGCCGCCGGCCGGCGGCGCTGAGGATCGG i saiBol1.JH378156 C 0 I 13 s aotNan1.NW_018500483v1 1975544 56 + 11732439 GCAGCACAGACCTCCCCGTCACCGCCCAGCCGCCGAACAACGGGGCTGAGAATCGG i aotNan1.NW_018500483v1 I 32 I 328 s otoGar3.GL873542 22187807 56 + 22939663 GCCACCCAAACCTCCTCATAAGCATTCAGCAGCTAACTGAAGGGACCAAGAACTTG i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=118202.000000 s hg38.chr20_KI270871v1_alt 54017 41 + 58661 CCGGAGG-------GGCAGAGCGACGCCGTCCCGGACCGGCCAGCCAT s panTro5.chr20 65630107 41 + 66533130 CCGGAGG-------GGCAGAGCGACGCCGTCCCCGACCGGCCAGCCAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389323 41 + 62195757 CCGGAGG-------GGCAGAGCGACGCCGTCCCCGACCGGCCAGCCAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803829 41 - 1017659 CCGGAGG-------GGCAGAGCGACGCCGTCCCCGACCGGCCAGCCAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294223 41 - 110113093 CCGGAGG-------GGCCGAGCAACGCCGTCCCCGACCGGACAGCCAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011555 35 - 92844088 CTGGAGGGGTGGATGGCAGAGCGACGCCGTCCCCG------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660808 35 + 96509753 CTGGAGGGGTGGATGGCAGAGCGACACCGTCCCCG------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111689 35 - 16982598 CTGGAGGGGTGGATGGCAGAGCGACGCCGTCCCCG------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959674 35 - 3785965 CTGGAGGGGTGGATGGCAGAGCGACGCCGTCCCCG------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627459 35 - 90373283 CTGGAGGGGTGGATGGCAGAGCGACGCCGTCCCCG------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516898 35 + 6149316 CTGGAGGGGTGGATGGCAGAGCGACGCCGTCCCCG------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738411 35 - 5823884 CTGGAGGGGTGGATGGCAGAGCAACGCCGTCCCTG------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451014 19 + 159171411 CAGATGGACCGGCCGGCGG----------------------------- i calJac3.chr5 I 13 C 0 s saiBol1.JH378156 15568932 19 + 16356641 CAGACGGACTGGCCGGCAG----------------------------- i saiBol1.JH378156 I 13 C 0 s otoGar3.GL873542 22187863 13 + 22939663 CCAAAGG-------GGCAAA---------------------------- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975600 328 + 11732439 I e cebCap1.NW_016107870v1 417669 158 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=261738.000000 s hg38.chr20_KI270871v1_alt 54058 40 + 58661 CCTCCCTCCTGGCCTCCACGCTCCGTCCGGGGTGAGGCC-T s panTro5.chr20 65630148 40 + 66533130 CCTCCCTCCTGGCCTCCACGCTCCGTCCGGGGTGAGGCC-T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389364 40 + 62195757 CCTCCCTCCTGGCCTCCACGCTCCGTCCGGGGTGAGGCC-T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803870 39 - 1017659 CCT-CCTCCTGGCCTCCACGCTCCGTCCGGGGTGAGGCC-T i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294264 40 - 110113093 CCTCCCTCCTGGCCTCCACGCTCCGTCCGGCGTGAGGCC-T i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011590 35 - 92844088 -----CTCCTGGCCTCCACGCTTCGTCTGGGGTGAGGCC-T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660843 35 + 96509753 -----CTCCTGGCCTCCACGCTTCGTCTGGGGTGAGGCC-T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111724 35 - 16982598 -----CTCCTGGCCTCCGCGCTTCGTCTGGGGTGAGGCC-T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959709 35 - 3785965 -----CTCCCGGCCTCCACGCTTCGTCTGGGGTGAGGCC-T i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627494 35 - 90373283 -----CTCCTGGCCTCCACGCTTTGTCTGGGGTGAGGCC-T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516933 35 + 6149316 -----CTCCCGGCCTCCACGCTTCGTCTGGGGTGAGGCC-T i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738446 35 - 5823884 -----CTCCTGGCCTCCACGCTTCGTCTGGGGTGAGGCC-T i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451033 38 + 159171411 CCTCCCTCCTGGCCTCCACACTCCA-CCGGGGTGAGGCC-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568951 38 + 16356641 CCTCCCTCCTGGCCTCCATGCTCCG-CCAGGGTGAGGCC-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 417827 39 + 1231380 CCTCCCTCCTGGCCTCCACGCTCCG-CCAGGGTGAGGCCT- i cebCap1.NW_016107870v1 I 158 I 123 s otoGar3.GL873542 22187876 24 + 22939663 ---------TGGCAGCAGGATGCCAATCAGGGT-------- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975600 328 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=773490.000000 s hg38.chr20_KI270871v1_alt 54098 140 + 58661 TCCACTCTGCTGAAGGAGCCTCACGGTCACGGCGATGACAGCTACGAGCTTGGGGAACATCGCACGCATCAGGCATCGTGTGGAGTGACTCACACGTTGAATCCCGGCGGCCATCAC--GTGACACAGATGCAGACAGGTTA s panTro5.chr20 65630188 140 + 66533130 TCCACTCTGCTGAACCAGCCTCACGGTCACGGCGATGACAGCTACGAGCTTGGGGAACATCGCACGCATCAGGCATCGTGTGGAGTGACTCACACGTTGAATCCCGGCGGCAATCAC--GTGACACAGATGCAGAACGGTTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389404 140 + 62195757 TCCACTCTGCTGAACGAGCCTCACGGTCACGGCGATGACAGCTACGAGCTTGGGGAACATCGCACGCATCAGGCATCGTGTGGAGTGACTCACACGTTGAATCCCGGCGGCAATCAC--GTGACACAGATGCAGAACGGTTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 803909 140 - 1017659 TCCACTCTGCTGAACGAGCCTCACGGTCACGGTGATGACAGCTACGAGCTTGGGGAACATCGCACGCATCAGGCATCGTGTGGAGTGACTCACACGTTGAATCCCGGCGGCAATCAC--GTGACACAGATGCAGAACGGTTA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294304 140 - 110113093 TTCACTCTGCTGAACGAGCCTCACGGTCACGGCGACGACAGCTACGAGCTTGGTGAACATTGCACGCATCAGGCGTCGCATGGAGTGATTCACGGGTTGAATCCCGGCGGCAATCAC--GTGACACAGATGCAGAACGGTTA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011625 136 - 92844088 TCTGTTCTGCTGAAGGCGCCTCACGGTCACGGCGATGACGGCTACGAGCTCGGTGAACGTCGCAGGCATCAGGCGTCGTGGGGAGTGACTCACGCGTCGAATCCCGGCGGCAACCAC--G----ACAGACGCAGAATGGTTA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95660878 136 + 96509753 TCCGTTCTGCTGAAGGCACCTCACGGTCACGGCGATGGCGGCTACGAGCTCGGTGAACGTCGCAGGCATCAGGCGTCGTGGGGAGTGACTCACGCGTCGAATCCCGGCGGCAACCAC--G----ACAGACGCAGAATGGTTA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111759 136 - 16982598 TCCGTTCCGCTGAAGGCGCCTCACGGTCATGGCGATGACGGCCACGAGCTCGGTGAACGTCGCAGGCATCAGGCGTCGTGGGGAATGACTCACGCGTCGAATCCCGGCGGCAACCAC--G----ACAGACGCAGAATGGTTA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959744 136 - 3785965 TCCGTTCTGCTGAAGGCGCCTCACGGTCACGGCGATGACGGCTACGAGCTCAGTGAACGTCGCAGGCATCAGGCGTCGTGGGGAGTGACTCACGCGTCGAATCCCGGCGGCAACCAC--G----ACAGACGCAGAACGGTTA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627529 127 - 90373283 TCCGTTCTGCTGAAGGCGCCTCACGGTCACGGCAATGATGGCTAC---------GAACGTCGCAGGCATCAGGCGTCGTGGGGAGTGA--CACGCATCGAATCCCGGCGGCAACCACATG----ACAGACGCAGAACGGTTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5516968 136 + 6149316 TCCGTTCTGCTGAAGGCACCTCACGGTCACGGCGATGACGGCTACGAGCTCGGTGAACGCCGCAGGCATCAGGCGTCGTGGGGAGTGACTCACGCGTCGAATCCCGGCGGCAACCAC--G----ACAGACGCGGAACGGTTA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738481 138 - 5823884 TCCGTTCTGCTGAAGGCGCCTCACGGTCACGGCGATGACGGCTACGAGCTCGGTGAACGTCGCGGGCTTCAGGCGTCGTGGGGAGTGACTCGCGCATCGAATCCCGGCGGCGACCGCAGG----ACAGACGCAGAACGGTTA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451071 131 + 159171411 TCCATTCTTCTGAATGCACCTCACGGCTATGGCAA---CAGCT--GAGCTCTGTGAATGTtatg----ccaggcgttgtgtggagtgcctcgcacgcgtaatccccctggcaatcac--aggatgcagacgtagaacgagtg i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15568989 110 + 16356641 TCCA---TTCTGAACACACCTCGAGGCCACGGCGA---CAGCT--GAGCTCTGTGGACGTCATG----CCAGGCGTCGTGTGGAGTG------------------CCTGGCGATCAC--GCGAGGCAGACGCAGAACGGCTG i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22187900 101 + 22939663 -------------------------GTCACCACTATGATGACAACAAGCGTAGGGCCCAGCA---GCACACAGCAGCGT-----GTAACCTGTGAATTTAACCCCAGAAGGA--CAA--G----ACAATTGCAGGCCTGACA i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975600 328 + 11732439 I e cebCap1.NW_016107870v1 417866 123 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=308461.000000 s hg38.chr20_KI270871v1_alt 54238 36 + 58661 CCCCCACCACGCAGACAAGGAAACTCGGGTCTAGGA s panTro5.chr20 65630328 36 + 66533130 CCCCCACCACGCAGACCACGAAACTCGGGTCTAGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389544 36 + 62195757 CCCCCACCACGCAGACCAGGAAACTCGGGTCTAGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804049 36 - 1017659 CCCCCACCACGCAGACCAGGAAACTCGGGTCTAGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294444 36 - 110113093 CCCCCACCACGCAGACAAGGAAACTCGGGTCTAGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011761 36 - 92844088 TCCCCACCATGCAGACAAGGAAACTTGGGTCTAGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661014 35 + 96509753 -CCCCACCATGCAGACAAGGAAACTTGGGTCTAGGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111895 36 - 16982598 TCCCCACCACGCAGACAAGGAAACTTGGGTCTAGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959880 36 - 3785965 TCCCCACCATGCAGACAAGGAAACTTGGGTCTAGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627656 36 - 90373283 CCCCCACCATGCAGACAAGGAAACTTGGGTCTAGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517104 36 + 6149316 TCCCCACCATGCAGACAAGGAAACTTGGGTCTAGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738619 36 - 5823884 CCCCCACCACGCAGATAAGGAAACGTGGGTCTAGGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451202 36 + 159171411 cccccaccatgcagacgagcaaactcaggTCTGGGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15569099 36 + 16356641 CCCCCACAGTGCAGACGAGGAAACTCGGGTCTGGGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 417989 36 + 1231380 CCCCCACCGTGCAGACGAGGAAACTCGGGTCTGGGA i cebCap1.NW_016107870v1 I 123 I 84 s otoGar3.GL873542 22188001 26 + 22939663 CCCACACTCCACGGTCT------CTTGGG----GGA i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975600 328 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=429701.000000 s hg38.chr20_KI270871v1_alt 54274 89 + 58661 GCCCGACGCTGGCCAGTCTCAGGATGACGCccccggccagagccccagccctgccctccccgagcctc-acgccccacgggtc------------ac--------------------------------------------------------------------gcAGG s panTro5.chr20 65630364 146 + 66533130 GCCCGACGCTGGCCAGTCTCAGGACGACGCCCCCGGCCAGAGCCCCATCCCTGCCCTCCCCGAGCCTC-ACACCCCACGGGTC------------ACACAGGGCCCTCAGAAC-----------TGTCTTCACAGCCTCCCCGAGCCTCACGCCCCACAGGTCACGCAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389580 146 + 62195757 GCCCGACGCTGGCCAGTCTCAGGACGACGCCCCCGGCCAGAGCCCCATCCCTGCCCTCCCCGAGCCTC-ACACCCCATGGGTC------------ACGCAGGGCCCTCAGAACTGTCTTCACAG-----------CCTCCCCGAGCCTCACGCCCCACAGGTCACGCAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804085 89 - 1017659 GCCCGACGCTGGCCAGTCTCAGGACGACGCCCCCGGCCAGAGCCCCAGCCCTGCCCTCCCCGAGCCTC-ACGCCCCACAGGTC------------AC--------------------------------------------------------------------TCAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294480 95 - 110113093 TCCCCACGCTGGCCAGTCTCAGGACAA-GACCCCAGCCAGAGCCCCAGCCCTGCCCTCCCGGAGCCTC-ACACCCCACAGGTC------------ACGCAGGGCCCTCA------------------------------------------------------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011797 99 - 92844088 TCCCAACGCTGGCCAGTCTCAGCACA--GGACCCAGCCAGAGCCCCAGCCCTGCCCTCCCCGAGTCTC-ACACCCCACAGGTC------------ATGCAGGGCCTTCGGAACC-------------------------------------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661049 99 + 96509753 TCCCAACGCTGGccagtctcagcaca--ggacccagccagagccccagcccTGCCCTCCCCGAGTCTC-ACACCCCACAGGTC------------ATGCAGGGCCTTCAGAACC-------------------------------------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16111931 99 - 16982598 TCCCAACGCTGGCCAGTCTCAGCACA--GGACCCAGCCAGAGCCCCAGCCCTGCCCTCCCCGAGTCTC-ACACCCCACAGGTC------------ATGCAGGGCCTTCGGAACC-------------------------------------------------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2959916 99 - 3785965 TCCCAACGCTGGCCAGTCTCAGCACA--GGACCCAGCCAGAGCCCCAGCCCTGCCCTCCCCGAGTCTC-ACACCCCACAGGTC------------ATGCAGGGCCTTCGGAACC-------------------------------------------------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627692 99 - 90373283 TCCCAACGCTGGCCAGTCTCAGGACA--GGACCCAGCCAGAGCCCCAGCCCTGCCCTCCCCGAGTCTC-ACGCCCCACAGGTC------------ACGTAGGGCCTTCGGAACC-------------------------------------------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517140 99 + 6149316 TCCCAACGCTGGCCAGTCTCAGCACA--GGACCCAGCCAGAGCCCCAGCCCTGCCCTCCCCGAGTCTC-ACGCCCCACAGGTC------------ATGCAGGGCCTTCGGAACC-------------------------------------------------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738655 99 - 5823884 TCCCAACGCTGGCCAGTCTCAAGACA--GGATCCAGCCAGAGCCCCAGCCCCGCCCTCCCCGAGTCTC-ACTCCCCACAGGCC------------ACGCAGGGCCTTCGGAACC-------------------------------------------------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451238 71 + 159171411 ------CCACAGCCA------------------------GAGCCCCAGCCCTGCCCTCCCTGAGCCTT-ACTCCCCCAATCCCCGCTCATGACAAACTCAGG-------------------------------------------------------------------- i calJac3.chr5 C 0 I 12 s saiBol1.JH378156 15569135 82 + 16356641 ------ccacagccag------------agccccagcccgagccccagccctgccc-ccctgagcctc-acgcccccaacccctgcTTGTGACAAACGCAGG-------------------------------------------------------------------- i saiBol1.JH378156 C 0 I 12 s otoGar3.GL873542 22188027 67 + 22939663 -----------GCCAA------------GACCCCAACTTGAGCCCAGGTCCCAGCCTTGACGGTCCCCTGCACCCAACAGATA------------ACTCTGG-------------------------------------------------------------------- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975600 328 + 11732439 I e cebCap1.NW_016107870v1 418025 84 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=400869.000000 s hg38.chr20_KI270871v1_alt 54363 38 + 58661 ------------GTCTTCACAGGTCACGGCCACACA-GGAGCACGTCTCAC s panTro5.chr20 65630510 38 + 66533130 ------------GTCTTCACAGGTCACGGCCACACA-GGAGCACGTCTCAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389726 38 + 62195757 ------------GTCTTCACAGGTCACGGCCACACA-GGAGCACGTCTCAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804174 38 - 1017659 ------------GTCTTCACAGGTCACGGCCACACA-GGAGCACGTCTCAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294575 38 - 110113093 ------------GTCTTCACAGGTCACGGCCACACA-GGAGCACATCTTGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011896 38 - 92844088 ------------GTCTTCACAGGTCACAGCTGCACA-GGAGCACGTCTCAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661148 38 + 96509753 ------------GTCTTCACAGGTCACAGCTGCACA-GGAGCACGTCTCAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112030 38 - 16982598 ------------GTCTTCACAGGTCACAGCTGCACA-GGAGCACGTCTCAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960015 38 - 3785965 ------------GTCTTCACAGGTCACAGCTGCACA-GGAGCACGTCTCAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627791 38 - 90373283 ------------GTCTTCACAGGTCACAGCTGCACA-GGAGCACGTCTCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517239 38 + 6149316 ------------GTCTTCACAGGTCACAGCTGCACA-GGAGCACGTCTCAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738754 38 - 5823884 ------------GTCTTCACAGGTCACAGCGGCACA-GGAGCATGTCTCAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451321 38 + 159171411 ------------GTCTTCACAGGTCACAGCCACACA-GGGACACTTCTCAC i calJac3.chr5 I 12 C 0 s saiBol1.JH378156 15569229 38 + 16356641 ------------GTCTTCACAGGTCACAGCCACACA-GGGGCACGTCTCAC i saiBol1.JH378156 I 12 C 0 s cebCap1.NW_016107870v1 418109 38 + 1231380 ------------GTCTTCACAGGTCTCAGCCACACA-GGGGCACGTCTCAC i cebCap1.NW_016107870v1 I 84 C 0 s aotNan1.NW_018500483v1 1975928 38 + 11732439 ------------GTCTTCACAGGTCACAGCCACACA-GGGGCACGTCTCAC i aotNan1.NW_018500483v1 I 328 I 134 s otoGar3.GL873542 22188094 51 + 22939663 GCTCTCTGAACCATCTCCATGGGTCGTAACTTCTTAGGGAACACACCTGGC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I a score=-508.000000 s hg38.chr20_KI270871v1_alt 54401 1 + 58661 -A s panTro5.chr20 65630548 1 + 66533130 -A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389764 1 + 62195757 -A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804212 1 - 1017659 -A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294613 1 - 110113093 -A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011934 1 - 92844088 -G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661186 1 + 96509753 -A i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112068 1 - 16982598 -A i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960053 1 - 3785965 -A i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627829 1 - 90373283 -A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517277 1 + 6149316 -A i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738792 1 - 5823884 -G i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451359 1 + 159171411 -A i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15569267 1 + 16356641 -A i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 418147 1 + 1231380 -A i cebCap1.NW_016107870v1 C 0 I 121 s otoGar3.GL873542 22188145 1 + 22939663 C- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975966 134 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=863767.000000 s hg38.chr20_KI270871v1_alt 54402 164 + 58661 -CGGGCGGAAGC--------------------ACAGAGGGGAGCGGGGCTGCGTCCACAGACCGCGCACACA---------CGAGCAGTTTCCCGTCTCAGAGCTGCCTGGCATGCACACTGGAAAATAGTTAAGACAGCCCCCCGTGAGGTAACACGCTTGGGCTCTGTCTGTGATGACAA----------GATGTCGGACAC s panTro5.chr20 65630549 164 + 66533130 -TGGGCGGAAGC--------------------ACAGAGGGGAGCGGGGCTGCGTCCACGGACCGCGCACACA---------CGAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCTCGCTGGAAAATAGTTAAGACAGCCCCCCGTGAGGTAACACGCTTGGGCTCTGTCTGTGATGACAA----------GATGTCAGACAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389765 164 + 62195757 -TGGGCGGAAGC--------------------ACAGAGGGGAGCGGGGCTGCGTCCACGGACCGCGCACACA---------CGAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCTCGCTGGAAAATAGTTAAGACAGCCCCCCGTGAGGTAACACGCTTGGGCTCTGTCTGTGATGACAA----------GATGTCAGACAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804213 164 - 1017659 -TGGGCGGAAGC--------------------ACAGAGGGGAGCGGGGCTACGTCCACGGACCGCGCACACA---------CGAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAATAGTTAAGACAGCCCCACGTGAGGTAACACACTTGGGCTCTGTCTGTGATGACAA----------GATGTCGGACAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294614 155 - 110113093 -TGGGCGGAAGC--------------------ACAGAGGGGAGCAGGACTGTGTCCACGGACAGCCCACACA---------TGGGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAAT---------AGCCTCCCGTGAGGTAACACGCTTGGGCTCTGTCTGTGATGACAA----------GAGGTCGGACAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92011935 151 - 92844088 -TGGGCGGAGGC--------------------CCAGAGGGGAGCGGGGCTGCA-CAGTGGACAGCACACACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAAC----AAGGTGACCCCCGGCGAGGTAAC--------GCTCTGTCTGCGATAATGA----------GATGTTGGACAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661187 155 + 96509753 -TGGGCGGAGGC--------------------CCAGAGGGGAGCGGGGCTGCA-CAGTGGACAGCACACACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAACAGTTAAGGTGACCCCCGGCGAGGTAAC--------GCTCTGTCTGCGATAATGA----------GATGTTGGACAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112069 155 - 16982598 -TGGGCGGAGGC--------------------CCAGAGGGGAGCGGGGCTGCA-CAGTGGACAGCACACACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAACAGTTAAGGTGACCCCCGGCGAGGTAAC--------GCTCTGTCTGCGATAATGA----------GATGTTGGACAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960054 162 - 3785965 -TGGGCGGAGGC--------------------CCAGAGGGGAGCGGGGCTGCA-CAGTGGACAGCACATACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAACAGTTAAGGTGACCCCCGGCGAGGTAACGCACTC-GGCTCTGTCTGCGATAATGA----------GATGTCGGACAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627830 162 - 90373283 -TGGGCGGAGGC--------------------CCAGAGGGGAGCGGGGCTGCA-CAGTGGACAGCACACACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAACAGTTAAGGTGACCCCCGGCGAGGTAACGCACTC-GGCTCCGTCTGTGATAATGA----------GATGTCGGACAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517278 162 + 6149316 -TGGGCGGAGGC--------------------CCAGAGGGGAGCAGGGCTGCA-CAGTGGACAGCACACACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCATGCACACTGGAAAACAGTTAAGGTGACCCCCGGCGAGGTAACGCACTC-GGCTCTGTCTGCGATAATGA----------GATGTCGGACAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738793 162 - 5823884 -TGGGCGGAGGC--------------------CCAGAGGGGAGCGGGGCTGCA-GAGTGGACAGCACACACA---------CCAGCAGTTTCCCGTCTCAGAGCTGCCCGGCACGCACACGGGAAAATACTTAGGACGACCCCCGGAGAGGTAACGCACTC-GGCTCTGTCTGTGATAATGA----------GATGTCGGACAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451360 113 + 159171411 --GGGTGGAGG----------------------CAGAGGGGAGTGGGGCTGCATCCGCAGACA-CACACACA---------CGAA-------CTGACTCAGTGCTACCC--------------------------------------GAGGT--CCCGCCTGGGCTCTGTCTGTGATGGCAA----------CATGTCAGGTAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15569268 119 + 16356641 --GGACGGAGG----------------------CAGAGGGGAGTGGGGCCACATCCACAGACA-CGCACACG----------GAGCAGTTCTCTGACTCAGCACTGCCC--------------------------------------GAGGT--CCCGCCTGGGCTCTGTCTGTGACGCTGA----------GATGTCAGGTAC i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22188146 172 + 22939663 CAGGGCACAGACACCATTGGGACACCCTCCCTCCAGAGGGGAGAGAGCCT----CTGTCGACAACACACACACCCTCCAACCCAGCAATTTCACATCCCAG---CATCCCACACTTACACTTGAAAATATTCCA-------------------------CTAGGCTCTGCTTGTATTAACAAGCTACCAGATGATATCAGATAC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975966 134 + 11732439 I e cebCap1.NW_016107870v1 418148 121 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=102873.000000 s hg38.chr20_KI270871v1_alt 54566 19 + 58661 AAGGCCAAGGTCTCCCCCG s panTro5.chr20 65630713 19 + 66533130 AAGGCCAAGGTCTCTCCCG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389929 19 + 62195757 AAGGCCAAGGTCTCTCCCG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804377 18 - 1017659 AAGG-CAAGGTCTCTCCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294769 19 - 110113093 ATGGCTAAGGTCTCTCCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012086 19 - 92844088 AAGGCCAACGTCTCTCCCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661342 19 + 96509753 AAGGCCAACGTCTCTCCCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112224 19 - 16982598 AAGGCCAACGTCTCTCCCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960216 19 - 3785965 AAGGCCAACGTCTCTCCCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89627992 19 - 90373283 AAGGCCAACGTCTCTCCCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517440 19 + 6149316 AAGGCCAACGTCTCTCCCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738955 19 - 5823884 AAGGCCAACGTCTCTCCCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451473 4 + 159171411 AAGG--------------- i calJac3.chr5 C 0 C 0 s otoGar3.GL873542 22188318 19 + 22939663 AAGGCCACAGTCCCTCGTA i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975966 134 + 11732439 I e cebCap1.NW_016107870v1 418148 121 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15569387 0 + 16356641 C a score=2560.000000 s hg38.chr20_KI270871v1_alt 54585 1 + 58661 G s panTro5.chr20 65630732 1 + 66533130 G i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389948 1 + 62195757 G i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804395 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294788 1 - 110113093 G i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012105 1 - 92844088 A i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661361 1 + 96509753 A i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112243 1 - 16982598 A i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960235 1 - 3785965 A i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628011 1 - 90373283 A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517459 1 + 6149316 A i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738974 1 - 5823884 A i colAng1.NW_012114444v1 C 0 C 0 s cebCap1.NW_016107870v1 418269 1 + 1231380 G i cebCap1.NW_016107870v1 I 121 C 0 s otoGar3.GL873542 22188337 1 + 22939663 A i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1975966 134 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15569387 0 + 16356641 C e calJac3.chr5 57451477 0 + 159171411 C a score=602745.000000 s hg38.chr20_KI270871v1_alt 54586 74 + 58661 GGGACATCGCAGGCATCACCCCACCATCCTTG-CCCCCCATCCTCCCAAAACGGGCACATTGCTCCCGCCTGAGC s panTro5.chr20 65630733 74 + 66533130 GGGACATCGCAGGCATCACCCCACCATCCTTG-CCCCCCATCCTCCCAAAACGGGCACATTGCTCCCGCCTGAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61389949 74 + 62195757 GGGACATCGCAGGCATCACCCCACCATCCTTG-CCCCCCATCCTCCCAAAACGGGCACATTGCTCCCGCCTGAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804396 74 - 1017659 AGGACATCGCAGGCATCACCCCACCATCCTTG-CCCCCCATCCTCCCAAAACAGGCACATTGCTCCCGCCTGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294789 74 - 110113093 GGGACATCGCAGGCATCACCCCACCATCCTTG-CCCCCCATCCTCCCAAAACGGGCACACTGCTCCCGCCTGAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012106 75 - 92844088 GGGACATTGTGGGCATCACCCCACCATCCTTGCCCCCCCATCCTCCCAAAACGGGCACACTGCTCTCGCCTGAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661362 75 + 96509753 GGGACATCGTGGGCATCACCCCACCATCCTTGCCCCCCCATCCTCCCAAAACGGGCACACTGCTCTCGCCTGAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112244 75 - 16982598 GGGACATCGTGGGCATCACCCCACCATCCTTGCCCCCCCATCCTCCCAAAACGGGCACACTGCTCTCGCCTGAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960236 75 - 3785965 GGGACATCGTGGGCATCAACCCACCATCCTTGCCCCCCCATCCTCCCAAAACGGGCACACTGCTCTCGCCTGAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628012 74 - 90373283 GGGACATCGCGGGCATCACCCCACCATCCTTG-CCCCCCGTCCTCCCAAAACGGGCACACGGCTCTCGCCTGAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517460 75 + 6149316 GGGACATCGTGGGCATCACCCCACCATCCTTGCCCCCCCATCCTCCCAAAACGGGCACACTGCTCTCGCCTGAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4738975 74 - 5823884 GGGACATCGCAGGCATCACCCCACCATCCTCG-TCCCCCATCCTCCCAGAACGGGCACATGGCTCTCGCCTGAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451477 70 + 159171411 --GACATCGCAGGCACCACCTCACCAGGCTGG--CCCCCAT-CTCCTAAAATGGGCACACTGCTTTCCCCTGAGC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 418270 71 + 1231380 GGGATGTCGCAGGCACCACCCCACCAGCCTTG---CCCCAT-CTCCTAAAACGGGCACACTGCTCTCCCCTGAGC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1976100 72 + 11732439 GGGACATCGCAGGCACCACCCCACCAGCCTCA--CCCCCAT-CTCCCAAAACGGGCACACTGCTCTCCCGTGAGC i aotNan1.NW_018500483v1 I 134 C 0 s otoGar3.GL873542 22188338 32 + 22939663 GGGAGGTCACAGACATCACCTC-----CCTTG--------------------------------------TGAGC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15569387 0 + 16356641 C a score=442541.000000 s hg38.chr20_KI270871v1_alt 54660 58 + 58661 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCAAACCTCAAGTGGAC s panTro5.chr20 65630807 58 + 66533130 CTTTAACAGGACATGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCAAACCTCAAGTGGAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390023 58 + 62195757 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCAAACCTCAAGTGGAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804470 58 - 1017659 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCAAACCTCAAGTGGAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294863 38 - 110113093 CTTTAACAGGACACGGCCTG----GCCCAGTGGCC---------------------AGTGGAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012181 58 - 92844088 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCCAACCTCAAGTGGAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661437 58 + 96509753 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCCAACCTCAAGTGGAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112319 58 - 16982598 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCCAACCTCAAGTGGAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960311 58 - 3785965 CTTTAACAGGACACGGCCCG----G-CCGCTGGCCCCAGCCTCCCGTCCAACCTCAAGTGGAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628086 58 - 90373283 CTTTAACAGGACACGGCCTG----G-CTGCTGGCCCCAGCCTCCCGTCCAACCTCAAGTGGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517535 58 + 6149316 CTTTAACAGGACACGGCCTG----G-CCGCTGGCCCCAGCCTCCCGTCCAACCTCAAGTGGAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739049 55 - 5823884 CTTTAATAGGACACGGCCTGCCCAG-CCGCTGGCCCCA-------GTCCAACCTCAAGTGGAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451547 58 + 159171411 CTTTGACGGGACACGGCCTG----G-CCCCTGGCGCCAGCCTCCCATCCAAGCTCAAGTAGAC i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 418341 58 + 1231380 CTTCGATGGGACAGAGTCTG----G-CCCCTGGCGCCAGCCTCCTGTCCAAGCTCAAGCGGAC i cebCap1.NW_016107870v1 C 0 I 77 s aotNan1.NW_018500483v1 1976172 58 + 11732439 CTTTGACGGGACACGTCCTG----G-CCCCTGGCGCCAGCCTCCCGTCCAAGTTCAAGTGGAC i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188370 0 + 22939663 C e saiBol1.JH378156 15569387 0 + 16356641 C a score=591590.000000 s hg38.chr20_KI270871v1_alt 54718 87 + 58661 CTTCGGAGGGCCCAGGGCACAGGCTGCCCCTCCCCTGCCTCTGGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCCCCATATTCA s panTro5.chr20 65630865 87 + 66533130 ATTCGGAGGGCCTAGGGCACAGGCTGCCCCTCCCCAGCCTCTGGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCCCCATATTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390081 87 + 62195757 ATTCGGAGGGCCTAGGGCACAGGCTGCCCCTCCCCAGCCTCTGGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCCCCATATTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804528 87 - 1017659 ATTCGGAGGGCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTGGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCCCCATATTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294901 87 - 110113093 ACTCGGAGGGCCCAGGGCACAGGCTGCCCCTTCCCAGCCTCTGGGCAAGGCAGCTCAGCCGTCCCATATCCCTTCTGCCCAGATTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012239 87 - 92844088 ACTCGGAGGTCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTAGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCGCCAGATTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661495 87 + 96509753 ACTCGGAGGTCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTAGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCGCCAGATTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112377 87 - 16982598 ACTCGGAGGTCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTAGGCAAGGCAGCTGGGCCATCCCATATCCCTTCTCGCCAGATTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960369 87 - 3785965 ACTCGGAGGGCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTAGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCGCCAGATTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628144 87 - 90373283 ACTCGGAGGGCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTGGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCGCCAGATTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517593 87 + 6149316 AGTCGGAGGGCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTAGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTCGCCAGATTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739104 87 - 5823884 ACTCGGAGGGCCCAGGGCACAGGCTGCCCCTCCCCAGCCTCTGGGCAAGGCAGCTCGGCCATCCCATATCCCTTCTTGCCAGATTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451605 69 + 159171411 ACTGGG-------AGAGCACAGGATGCCCCTT----------GGGCAAAGCAGCTCAACTAT-CCACATCCCTCCTCCCCGGACTCA i calJac3.chr5 C 0 C 0 s aotNan1.NW_018500483v1 1976230 79 + 11732439 ACTGGG-------AGAGCACAGGAGGCCCCTCCCCAGCCCCGGGGCAAAGCGGCTCAACCAT-CCACATCCCTCCCCCCTGGACTCG i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418399 77 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188370 0 + 22939663 C e saiBol1.JH378156 15569387 0 + 16356641 C a score=116292.000000 s hg38.chr20_KI270871v1_alt 54805 13 + 58661 AGGCCCCCACAGG s panTro5.chr20 65630952 13 + 66533130 AGGCCCCCACAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390168 13 + 62195757 AGGCCCCCACAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804615 13 - 1017659 AGGCCCCCACAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109294988 13 - 110113093 AGGCCCCCACAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012326 13 - 92844088 AGGCCCCCACAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661582 13 + 96509753 AGGCCCCCACAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112464 13 - 16982598 AGGCCCCCACAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960456 13 - 3785965 AGGCCCCCACAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628231 13 - 90373283 AGGCCCCCACAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517680 13 + 6149316 AGGCCCCCACAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739191 13 - 5823884 AGGCCCCCCCAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451674 12 + 159171411 AGGTCCCCACA-A i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 418476 13 + 1231380 AGGCCCCCACAGG i cebCap1.NW_016107870v1 I 77 C 0 s aotNan1.NW_018500483v1 1976309 13 + 11732439 AGGTCCTCACAGG i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188370 0 + 22939663 C e saiBol1.JH378156 15569387 0 + 16356641 C a score=755335.000000 s hg38.chr20_KI270871v1_alt 54818 90 + 58661 TCCCCCTTGGTCCTCCAGACTTGCCCATTTTCCTAGGAGGGAA-CCCACTCTGTGTAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA s panTro5.chr20 65630965 90 + 66533130 TCCCCCTTGGTCCTCCAGACTTGCCCATTTTCCTAGGAGGGAA-CCCACTCTGTGTAACAGATTCATCTCCCCACACTGGAAGCAGCTTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390181 90 + 62195757 TCCCCCTTGGTCCTCCAGACTTGCCCATTTTCCTAGGAGGGAA-CCCACTCTGTGTAACAGATTCATCTCCCCACACTGGAAGCAGCTTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804628 90 - 1017659 TCCCCCTTGGTCCTCCAGACTTGCCCATTTTCCTAGGAGGGAA-CCCACTCTGTGTAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295001 90 - 110113093 TCCCCCTTGGTCCTCCAGACTTGCCCATTTTCCTAGAAAGGAA-CCCACTCTGTGTAGCAGATTCATCTCCCCACATTGGAAGCAGCTTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012339 90 - 92844088 TCCCCCTTGGTCCTCCAGACCTGCCCATTTTCCTAGAAGGGAA-CTCACTCTGCATAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661595 90 + 96509753 TCCCCCTTGGTCCTCCAGACCTGCCCATTTTCCTAGAAGGGAA-CTCACTCTGCATAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i macFas5.chr10 C 0 I 8 s macNem1.NW_012014244v1 16112477 90 - 16982598 TCCCCCTTGGTCCTCCAGACCTGCCCATTTTCCTAGAAGGGAA-CTCACTCTGCATAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960469 90 - 3785965 TCCCCCTTGGTCCTCCAGACCTGCCCATTTTCCTAGAAGGGAA-CTCACTCTGCATAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628244 90 - 90373283 TCCCCCTTGGTCCTCCAGACCTGCCCATTTTCCTAGAAGGGAA-CTCACTCTGCGTAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517693 90 + 6149316 TCCCCCTTGGTCCTCCAGACCTGGCCATTTTCCTAGAAGGGAA-CTCACTCTGCATAGCAGATTCATCTTCCCACACTGGAAGCAGCTTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739204 90 - 5823884 TCCCCCTTGGTCCTCCAGACCTGCCCATTTTCCTAGAAGGGAA-CTCACTCTGTGTAGCAGATTCATCTCCCCACACTGGAAGCAGCTTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451686 90 + 159171411 CCCCCCTTGGTCCTCTGGTCTTGCCCATTTTCGTAGAGAAGAA-CCCACTCTGTGTGGCAGATCCATGTCCCGGCACTAGAAGCAGCTTCA i calJac3.chr5 C 0 C 0 s cebCap1.NW_016107870v1 418489 89 + 1231380 TCCCCCTTGATCCTC--GACTTGCCCGTTTTCCTAGAAAAGAACCCCGCTCTGTGTAGCAGATACACGTCCCCACACTGGAAGCAGCTTCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1976322 90 + 11732439 TCCTCCTTGGTCCTCTGGACTTGCCCATTTTCGTAGAGAAGAA-CTGACTCTGTGCAGCAGATCCATGTCCTGACACTGGAAGCAGCTTCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22188370 35 + 22939663 TTCACCTTGG-------------------------GGAGGGAC----------------AGCTTCTACTGCCAACA--------------- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I e saiBol1.JH378156 15569387 0 + 16356641 C a score=18359.000000 s hg38.chr20_KI270871v1_alt 54908 3 + 58661 GGC s panTro5.chr20 65631055 3 + 66533130 GGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390271 3 + 62195757 GGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804718 3 - 1017659 GGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295091 3 - 110113093 GGC i nomLeu3.chr13 C 0 I 310 s rheMac8.chr10 92012429 3 - 92844088 GGC i rheMac8.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112567 3 - 16982598 GGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960559 3 - 3785965 GGC i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4739294 3 - 5823884 GGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451776 3 + 159171411 AGC i calJac3.chr5 C 0 I 10 s cebCap1.NW_016107870v1 418578 3 + 1231380 GGC i cebCap1.NW_016107870v1 C 0 I 820 s aotNan1.NW_018500483v1 1976412 3 + 11732439 GGc i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e saiBol1.JH378156 15569387 0 + 16356641 C e chlSab2.chr2 89628334 0 - 90373283 C e macFas5.chr10 95661685 8 + 96509753 I a score=-2513.000000 s hg38.chr20_KI270871v1_alt 54911 3 + 58661 CCA s panTro5.chr20 65631058 3 + 66533130 GGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390274 3 + 62195757 GGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804721 1 - 1017659 G-- i gorGor5.CYUI01015750v1 C 0 C 0 s cerAty1.NW_012001373v1 2960562 3 - 3785965 GGA i cerAty1.NW_012001373v1 C 0 C 0 s calJac3.chr5 57451789 3 + 159171411 CCA i calJac3.chr5 I 10 C 0 s aotNan1.NW_018500483v1 1976415 3 + 11732439 tga i aotNan1.NW_018500483v1 C 0 I 9 e nomLeu3.chr13 109295094 310 - 110113093 I e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e saiBol1.JH378156 15569387 0 + 16356641 C e colAng1.NW_012114444v1 4739297 0 - 5823884 C e chlSab2.chr2 89628334 0 - 90373283 C e macNem1.NW_012014244v1 16112570 0 - 16982598 C e macFas5.chr10 95661685 8 + 96509753 I e rheMac8.chr10 92012432 0 - 92844088 C a score=600.000000 s hg38.chr20_KI270871v1_alt 54914 1 + 58661 g s panTro5.chr20 65631061 1 + 66533130 G i panTro5.chr20 C 0 I 7 s panPan2.chr20 61390277 1 + 62195757 G i panPan2.chr20 C 0 I 7 s calJac3.chr5 57451792 1 + 159171411 G i calJac3.chr5 C 0 I 21 e nomLeu3.chr13 109295094 310 - 110113093 I e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1976418 9 + 11732439 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e saiBol1.JH378156 15569387 0 + 16356641 C e colAng1.NW_012114444v1 4739297 0 - 5823884 C e chlSab2.chr2 89628334 0 - 90373283 C e cerAty1.NW_012001373v1 2960565 0 - 3785965 C e macNem1.NW_012014244v1 16112570 0 - 16982598 C e macFas5.chr10 95661685 8 + 96509753 I e rheMac8.chr10 92012432 0 - 92844088 C e gorGor5.CYUI01015750v1 804722 0 - 1017659 C a score=-321.000000 s hg38.chr20_KI270871v1_alt 54915 8 + 58661 ctcctcta s macFas5.chr10 95661693 3 + 96509753 -----CCA i macFas5.chr10 I 8 I 3 s cerAty1.NW_012001373v1 2960565 5 - 3785965 ---GGCCA i cerAty1.NW_012001373v1 C 0 I 3 s calJac3.chr5 57451814 8 + 159171411 ATTTCCTA i calJac3.chr5 I 21 C 0 e nomLeu3.chr13 109295094 310 - 110113093 I e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1976418 9 + 11732439 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e saiBol1.JH378156 15569387 0 + 16356641 C e colAng1.NW_012114444v1 4739297 0 - 5823884 C e chlSab2.chr2 89628334 0 - 90373283 C e macNem1.NW_012014244v1 16112570 0 - 16982598 C e rheMac8.chr10 92012432 0 - 92844088 C e gorGor5.CYUI01015750v1 804722 0 - 1017659 C e panPan2.chr20 61390278 7 + 62195757 I e panTro5.chr20 65631062 7 + 66533130 I a score=2100.000000 s hg38.chr20_KI270871v1_alt 54923 1 + 58661 c s panTro5.chr20 65631069 1 + 66533130 C i panTro5.chr20 I 7 C 0 s panPan2.chr20 61390285 1 + 62195757 C i panPan2.chr20 I 7 C 0 s nomLeu3.chr13 109295404 1 - 110113093 C i nomLeu3.chr13 I 310 C 0 s macFas5.chr10 95661699 1 + 96509753 C i macFas5.chr10 I 3 C 0 s cerAty1.NW_012001373v1 2960573 1 - 3785965 C i cerAty1.NW_012001373v1 I 3 C 0 s calJac3.chr5 57451822 1 + 159171411 C i calJac3.chr5 C 0 I 8 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1976418 9 + 11732439 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e saiBol1.JH378156 15569387 0 + 16356641 C e colAng1.NW_012114444v1 4739297 0 - 5823884 C e chlSab2.chr2 89628334 0 - 90373283 C e macNem1.NW_012014244v1 16112570 0 - 16982598 C e rheMac8.chr10 92012432 0 - 92844088 C e gorGor5.CYUI01015750v1 804722 0 - 1017659 C a score=20086.000000 s hg38.chr20_KI270871v1_alt 54924 19 + 58661 ggctcc-------tctacggctGCGG s panTro5.chr20 65631070 19 + 66533130 AGCTCC-------TCTACGGCTGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390286 19 + 62195757 AGCTCC-------TCTACGGCTGGGG i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109295405 19 - 110113093 AGCTCC-------TCTACGGCTGCCG i nomLeu3.chr13 C 0 C 0 s macFas5.chr10 95661700 18 + 96509753 AGCTCC-------TCTACCGCTGC-G i macFas5.chr10 C 0 C 0 s cerAty1.NW_012001373v1 2960574 18 - 3785965 AGCTCC-------TCTACCGCTGC-G i cerAty1.NW_012001373v1 C 0 C 0 s calJac3.chr5 57451831 26 + 159171411 GGCTCACCTGGCTCCTGTGTCTGTGG i calJac3.chr5 I 8 C 0 s aotNan1.NW_018500483v1 1976427 23 + 11732439 ggctcctgtg---cctgtgtctgtgG i aotNan1.NW_018500483v1 I 9 C 0 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e saiBol1.JH378156 15569387 0 + 16356641 C e colAng1.NW_012114444v1 4739297 0 - 5823884 C e chlSab2.chr2 89628334 0 - 90373283 C e macNem1.NW_012014244v1 16112570 0 - 16982598 C e rheMac8.chr10 92012432 0 - 92844088 C e gorGor5.CYUI01015750v1 804722 0 - 1017659 C a score=16339.000000 s hg38.chr20_KI270871v1_alt 54943 16 + 58661 AACGTCA-TTCCTACAG s panTro5.chr20 65631089 16 + 66533130 AACGTCA-TTCCTATAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390305 16 + 62195757 AACGTCA-TTCCTATAG i panPan2.chr20 C 0 C 0 s nomLeu3.chr13 109295424 16 - 110113093 AACGTCA-TTCCTACGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012432 1 - 92844088 ----------------G i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661718 16 + 96509753 AATGTCA-CTCCTACAG i macFas5.chr10 C 0 T 49 s macNem1.NW_012014244v1 16112570 1 - 16982598 ----------------G i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960592 16 - 3785965 AATGTCA-CTCCTACAG i cerAty1.NW_012001373v1 C 0 C 0 s colAng1.NW_012114444v1 4739297 1 - 5823884 ---------------A- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451857 17 + 159171411 AATATCATTTCCTACAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15569387 16 + 16356641 AATGTCA-CTCCTACAG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1976450 17 + 11732439 AATGTCATCTCCTACAG i aotNan1.NW_018500483v1 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188405 0 + 22939663 C e manLeu1.NW_012104365v1 5517783 0 + 6149316 C e chlSab2.chr2 89628334 0 - 90373283 C e gorGor5.CYUI01015750v1 804722 0 - 1017659 C a score=677633.000000 s hg38.chr20_KI270871v1_alt 54959 126 + 58661 GGCTGAGGCTAGCCCGG--CTCCTG--TGCAGC-TATGGAACGTCA-CTCCTACAGGGCTGAGGCTAGCCTGGCTCCTC-----------------------------------------------------------TACGGCTGTGGAATGTCAT-TCCTATGGGGCTGAGGCTAGCCCAGCTCCTGT---------GA s panTro5.chr20 65631105 126 + 66533130 GGCTGAGGCTAGCCCGG--CTCCTG--TGCGGC-TATGGAACGTCA-CTCCTACAGGGCTGAGGCTAGCCTGGCTCCTC-----------------------------------------------------------TACGGCTGTGGAATGTCAT-TCCTATGGGGCTGAGGCTAGCCCAGCTCCTGT---------GA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390321 126 + 62195757 GGCTGAGGCTAGCCCGG--CTCCTG--TGCGGC-TATGGAACGTCA-CTCCTACAGGGCTGAGGCTAGCCTGGCTCCTC-----------------------------------------------------------TACGGCTGTGGAATGTCAT-TCCTATGGGGCTGAGGCTAGCCCAGCTCCTGT---------GA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804722 122 - 1017659 ----GAGGCTAGCCCAG--CTCTTC--TACGGC-TGCGGAACGTCA-CTCCTACAGGGCTGAGGCTAGCCCAGCTCCTC-----------------------------------------------------------TACGGCTGCGGAACGTCAT-TCCTACAGGGCTGAGGCTAGCCCAGCTCCTGT---------GA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295440 126 - 110113093 GGCTGAGGCTAGCCCAG--CTCCTC--TACAGC-TGCCGAACGTCA-TTCCTACAGGGCTGAGGCTGGCCCAGCTGCTC-----------------------------------------------------------TACGGCTGTGGAACGTCAT-TCCTATGGGGCTGAGGCTAGCCCGGCTCCTGT---------GA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012433 130 - 92844088 ----GAGGCCAGCCCAG--CTCCTC--TACCGC-TGC-GAATGTCA-CTCCTACAGCGCTTGGGCCAGCCTGGCTCTTC-----------------------------------------------------------TGTGACTTCGGAACGTCAT-TCCTATGGGGCCGAGGTTGGCCCAGCCCCGGTGCGGCTATGGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661685 134 + 96509753 GGCGGAGGCCAGCCCAG--CTCCTC--TACCGC-TGC-GAATGTCA-CTCCTACAGCGCTTGGGCCAGCCTGGCTCTTC-----------------------------------------------------------TGTGACTTCAGAACGTCAT-TCCTATGGGGCTGAGGCTGGCCCAGCCCCGGTGCGGCTATGGA i macFas5.chr10 T 49 C 0 s macNem1.NW_012014244v1 16112571 130 - 16982598 ----GAGGCCAGCCCAG--CTCCTC--TACCGC-TGC-GAATGTCA-CTCCTACAGCGCTTGGGCCAGCCTGGCTCTTC-----------------------------------------------------------TGTGACTTCGGAACGTCAT-TCCTATGGGGCCGAGGCTGGCCCAGCCCCGGTGCGGCTATGGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960608 85 - 3785965 CGCTTGGGCCAGCCTGG--CTCTTC--CGTGAC-TTCGGAACGTCA-TTCCTA------TGGGGCCG--------------------------------------------------------------------------------------------------------AGGCTGGCCCAGCCCTGGTGCGGCTATGGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628334 134 - 90373283 GGCGGAGGCCAGCCCAG--CTCCTC--TACTGC-TGC-GAATGTCA-CTCCTACAGCGCTTGGGCCAGCCTGGCTCTTC-----------------------------------------------------------TGTGACTTCGGAACGTCAT-TCCTATGGGGCCGAGGCTGGCCCAGCCCCTGTGCGGCTATGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517783 134 + 6149316 GGCAGAGGCCAGCCCAG--CTCCTC--CACCGC-TGC-GAATGTCA-CTCCTACAGCGCTTGGGCCAGCCTGGCTCTTC-----------------------------------------------------------CGTGACTTCGGAACGTCAT-TCCTATGGGGCCGAGGCTGGCCCAGCCCCGGGGCGGCTATGGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739298 131 - 5823884 ----GAGGCCAGCCCAG--CTCCTC--TACAGC-TGCGGAATGTCA-CTCCTCCAGGGCTTGGGCCAGCCTGGCTCTTC-----------------------------------------------------------GGTGACTCTGGAACGTCAT-TCCTATGGGGCTGAGGCTGGCCCAGCTCCTGTGCGGCGATGGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57451874 128 + 159171411 GGCTGAGGTTCGCCCGG--CTCCTG--TGTGTC-TGTGGAATGTCATTTCCTACAGGGCTGAGGCTCGCCTGGCTCCTG-----------------------------------------------------------TGTGTCTGTGGAATGTCATTTCCTACAGGGCTGAGGCTCGCCTGGCTCCTCTGT--------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15569403 124 + 16356641 GGCTGAGGCTGGCCCGG--CTCC----TGCGTC-TGTGGAATGTCATTTCCTACAGGGCTGAGGCTGGCCCGGCTCC-------------------------------------------------------------GGCGTCTGTGGAATGTCATTTCCTACAGGGCTGAGGCTGGCCCGGCTCCTGCGT--------- i saiBol1.JH378156 C 0 I 613 s aotNan1.NW_018500483v1 1976467 189 + 11732439 GGCTGAGGCTGGCCCGG--CTCCTGTCTGTGTC-TGTGGAATGTCATCTCCTACAGGGCTGAGGCTGGCCCGGCTCCTGCGTCTGTGTCTGTGGAATGTCATCTCCCACAGGGCTGAGGCTGGCCCGGCTCCTGCGTCTGTGTCTGTGGAATGTCATCTCCTACAGGGCTGAGGCTGGCCCGGCTCCTGTGT--------- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22188405 82 + 22939663 ----AAGGCTAGCCCAGTCCTTCTC--TGCATCAAGTGAAACGTCA--TGCTCCAGGGTGGAGGCTAGGCCATCCCTTG-----------------------------------------------------------T----CTGCAGCAGG------------------------------------------------ i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=14980.000000 s hg38.chr20_KI270871v1_alt 55085 2 + 58661 GG s panTro5.chr20 65631231 2 + 66533130 GG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390447 2 + 62195757 GG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804844 2 - 1017659 GG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295566 2 - 110113093 GG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012563 2 - 92844088 GG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661819 2 + 96509753 GG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112701 2 - 16982598 GG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960693 2 - 3785965 GG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628468 2 - 90373283 GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517917 2 + 6149316 GG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739429 2 - 5823884 GG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452002 1 + 159171411 -G i calJac3.chr5 C 0 I 1 s aotNan1.NW_018500483v1 1976656 1 + 11732439 -G i aotNan1.NW_018500483v1 C 0 I 3 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I e otoGar3.GL873542 22188487 0 + 22939663 C e saiBol1.JH378156 15569527 613 + 16356641 I a score=130740.000000 s hg38.chr20_KI270871v1_alt 55087 14 + 58661 CTATGGAATGTCA-C s panTro5.chr20 65631233 14 + 66533130 CTATGGAATGTCA-C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390449 14 + 62195757 CTATGGAATGTCA-C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804846 14 - 1017659 CTATGGAATGTCA-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295568 14 - 110113093 CTATGGAATGTCA-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012565 14 - 92844088 CTACGGAATGTCA-C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661821 14 + 96509753 CTACGGAATGTCA-C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112703 14 - 16982598 CTACGGAATGTCA-C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960695 14 - 3785965 CTACGGAATGTCA-C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628470 14 - 90373283 CTACGGAATGTCA-C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517919 14 + 6149316 CTACGGAATGTCA-C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739431 14 - 5823884 CTATGGACTGTCA-C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452004 14 + 159171411 CTGTGGAATGTCA-C i calJac3.chr5 I 1 C 0 s saiBol1.JH378156 15570140 15 + 16356641 CTGTGGAATGTCATT i saiBol1.JH378156 I 613 C 0 s aotNan1.NW_018500483v1 1976660 14 + 11732439 CTGTGGAATGTCA-C i aotNan1.NW_018500483v1 I 3 C 0 s otoGar3.GL873542 22188487 11 + 22939663 ---TGGAATGTCA-C i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e cebCap1.NW_016107870v1 418581 820 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=1275722.000000 s hg38.chr20_KI270871v1_alt 55101 142 + 58661 TCCTACAGGGCAGAGGCTAGCCCCGTGCTCTTGCGAGCAGCTGC-CAGACGGACTTGCTGAGTGTGCACACAGGGGCCATGGACGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATAGATTCATTTGTTTATTGACTAAAA-C s panTro5.chr20 65631247 142 + 66533130 TCCTACAGGGCAGAGGCTAGCCCCGTGCTCTTGCAAGCAGCTGC-CAGACGGACTTGCTGAGTGTGCACACAGGGGCCATGGACGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATAGATTCATTTGTTTATTGACTAAAA-C i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390463 142 + 62195757 TCCTACAGGGCAGAGGCTAGCCCCGTGCTCTTGCAAGCAGCTGC-CAGACGGACTTGCTGAGTGTGCACACAGGGGCCATGGACGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATAGATTCATTTGTTTATTGACTAAAA-C i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 804860 142 - 1017659 TCCTACAGGGCAGAGGCTAGCCCCGTGCTCTTGCGAGCAGCTGC-CAGACAGACTTGCTGAGTGTGCACACAGGGGCCATGGACGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATAGATTCATTCGTTTATTGACTAAAA-C i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295582 142 - 110113093 TCCTACAGGGCAGAGGCTAGCCCCGTGCTCTTGCGAGCAGCTGC-CAGATGGACTTGCTGAGTGTGCACACAGGGAGCATGGATGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATAGATTCATTTGTTTATTGACTAAAA-C i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012579 140 - 92844088 TCCTACA-GGCAGAGGCTGGCCCCATGCTCTTGCGAGCAGCTAC-AGGACGGACTTGCTGAGTGTGCACATGGGGG-CACGGACGTGTCAGGAGCACAGGGACTGGCGGAGA------TCCACAGACTCATTCGTTTATCAGCTAAAA-C i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661835 140 + 96509753 TCCTACA-GGCAGAGGCTGGCCCCGTGCTCTTGCGAGCAGCTAC-AGGACGGACTTGCTGAGTGTGCACACGGGGG-CACGGACGTGTCAGGAGCACAGGGACTGGCGGAGA------TCCACAGACTCATTCGTTTATCAGCTAAAA-C i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112717 140 - 16982598 TCCTACA-GGCAGAGGCTGGCCCCGTGCTCTTGCAAGCAGCTAC-AGGACGGACTTGCTGAGTGTGCACACGGGGG-CACGGACGTGTCAGGAGCACAGGGACTGGCGGAGA------TCCACAGACTCATTCGTTTATCAGCTAAAA-C i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960709 140 - 3785965 TCCTACA-GGCAGAGGCTGGCCCCGTGCTCTTGCGAGCAGCTAC-AGGACGGACTTGCTGAGTGTGCACACGGGGG-CACGGACGTGTCAGGAGCACAGGGACTGGCGGAGA------TCCACAGACTCATTCGTTTATCAGCTAAAA-C i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628484 140 - 90373283 TCCCACA-GGCAGAGGCTGGCCCCGTGCTCTTGCGAGCAGCTAC-AAGACGGACTTGCTGAGTGTGCACACGGGGG-CACGGACGTGTCAGGAGCACAGGGACTGGCGGAGA------TCCACAGACTCATTCGTTTATCAGCTAAAA-C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5517933 140 + 6149316 TCCTACA-GGCAGAGGCTGGCCCCGTGCTCTTGCGAGCAGCTAC-AGGACGGACTTGCTGAGTGTGCACACGGGGG-CATGGACGTGTCAGGAGCACAGGGACTGGCGGAGA------TCCACAGACTCATTCGTTTATCAGCTAAAA-C i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739445 141 - 5823884 TCCTACAGGGCAGAGGCTGGCCCCGTGCTCTTGCGAGCAGCTAC-AAGACGGACTTGCTGAGTGTGCACACGGGGG-CATGGATGCGTCAGGAGCACACGGACTAGCGGAGA------TCCACAGACTCATTCGTTTATCAACTAAAA-C i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452018 138 + 159171411 TCCTACGGGACTGAGGCT-GCACTGTGCTCTCGGGAACAGCTAC-CAGACAATCTTGCCGAGCGCGCACAGAGGG--CATGGACGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATCAATTTGTTAATTTATTGACCAAAA-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570155 138 + 16356641 TCCTACAGGGCTGAGGCT-GGCCCGTGCTCTTGGGAACAGCTAC-CAGACAGTCTCGCCGAGTGCACACAGAGGG--CATGGGCGTGTCAGGAGCACAGGGAGTAACGGAGA------TCCATCAATTCGTTCGTTTATTGATCAAAA-- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419401 138 + 1231380 TCCTGCAGGGCTGAGGCT-GCCCTGTGCTCTTGGGAACAGCTAC-CAGACGGTCTTGCCGAGTGCACACAGAAGG--CATGGACGTGTCAGGAGCACAGGGACTAACGGAGA------TCCATCAATTCGTTCGTATATTGACCAAAA-- i cebCap1.NW_016107870v1 I 820 C 0 s aotNan1.NW_018500483v1 1976674 139 + 11732439 TCCTACAGGGCTGAGGCT-GCCCCGTGCTCTTGGGAACAGCTAC-CAGACAGTCTTGCCGAGTGCACACAGAGGG--CATGGACGTGTCAGGAGCACAGGGAGTAGCGGAGA------TCCATCAGTTCGTTCATTTATTGACCAAAAC- i aotNan1.NW_018500483v1 C 0 I 28 s otoGar3.GL873542 22188498 130 + 22939663 -TCCACA-GGCAGAGGCTAGCCCTGTGCTCTCACGAGTGGAGACTCAGAATATCATGCTA-----------------CATGGACATGCCAGGAGCCCAGGGACTGACAAAGATTTTTGTCAAAGGTTTCATTAATTTATGAGCTAAAA-C i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e canFam3.chr24 47095500 2364 + 47698779 I a score=125650.000000 s hg38.chr20_KI270871v1_alt 55243 22 + 58661 AAACTGGGAAAATCACTATGTT s panTro5.chr20 65631389 22 + 66533130 AAACTGGGAAAATCACTATGTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390605 22 + 62195757 AAACTGGGAAAATCACTATGTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805002 22 - 1017659 AAACTGGGAAAATCACTATGTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295724 22 - 110113093 AATCTGGGAAAACCACTATGTT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012719 22 - 92844088 AAACTGGGAAAACCACTGTGTT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661975 22 + 96509753 AAACTGGGAAAACCACTGTGTT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112857 22 - 16982598 AAACTGGGAAAACCACTGTGTT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960849 22 - 3785965 AAACTGGGAAAACCACTATGTT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628624 22 - 90373283 AAACTGGGAAAACCACGATGTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518073 22 + 6149316 AAACTGGGGAAACCACTATGTT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739586 22 - 5823884 AAACTGGGAAAACCTCTATGTT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452156 9 + 159171411 -------------CGCTATCTG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570293 9 + 16356641 -------------GCCTATCTG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419539 9 + 1231380 -------------CGCTATCTG i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22188628 21 + 22939663 -AAATAGGAAAAACACTATCTT i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181129523 1267 + 182113224 I e aotNan1.NW_018500483v1 1976813 28 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=170160.000000 s hg38.chr20_KI270871v1_alt 55265 20 + 58661 AAGC--CACT-----CTCCACCACTGG s panTro5.chr20 65631411 20 + 66533130 AAGC--CACT-----CTCCACCACTGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390627 20 + 62195757 AAGC--CACT-----CTCCACCACTGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805024 20 - 1017659 AAGC--CACT-----CTCCACCACTGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295746 20 - 110113093 AAGC--CACT-----CTCCACCACTGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012741 20 - 92844088 AAGC--CACT-----CTCCACCACTGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95661997 20 + 96509753 AAGC--CACT-----CTCCACCACTGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112879 20 - 16982598 AAGC--CACT-----CTCCACCACTGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960871 20 - 3785965 AAGC--CACT-----CTCCACCACTGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628646 20 - 90373283 AAGC--CACT-----CTCCACCACTGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518095 20 + 6149316 AAGC--CACT-----CTCCACCACTGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739608 20 - 5823884 AAGC--CACT-----CTCCACCACTGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452165 20 + 159171411 CAGA--CACT-----CCACCCCACCAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570302 19 + 16356641 CAGA--CACT-----CC-CCCGACCGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419548 20 + 1231380 CAGA--CACT-----CCCCCCTACCGC i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22188649 22 + 22939663 AAGCTGCTCT-----CTCTACCACTGG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181130790 25 + 182113224 AAGA--CACTAAAGACCCTACCACTGG i mm10.chr2 I 1267 C 0 e aotNan1.NW_018500483v1 1976813 28 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=936237.000000 s hg38.chr20_KI270871v1_alt 55285 96 + 58661 ACTCAGCCTGTGCCGTGAGAAGTGACCCCAG----TTCTG----AAACACTCCAGGATTTAAGCATTTTCAAAACTGGAGACAGGATTCCCACGTGGTCA----GCAT s panTro5.chr20 65631431 96 + 66533130 ACTCAGCCTGTGCCGTGAGAAGTGATCACAG----TTCTG----AAACACTCCAGGATTTAAGCATTTTCAAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390647 96 + 62195757 ACTCAGCCTGTGCCGTGAGAAGTGATCACAG----TTCTG----AAACACTCCAGGATTTAAGCATTTTCAAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805044 96 - 1017659 ACTCAGCCTGTGCCGTAAGAAGTGACCACAG----TTCTG----AAACACTCCAGGATTTAAGCATTTTCAAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295766 94 - 110113093 ACTCAGCCTGTGCCCTGAGAAGTGACCAGAG----TTCTG----AAACACTCCAGGATTTAAGCATTTGCAAAACTGGAGAT--GACTCCCACGTGGTCA----GCAT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012761 95 - 92844088 ACTCAGCCTGTGCCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCGTTTTCCAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662017 95 + 96509753 ACTCAGCCTGTGCCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCGTTTTCCAAACTGGAGACAGGACTCCCATGTGGTCA----GCAT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112899 95 - 16982598 ACTCAGCCTGTGGCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCGTTTTCCAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960891 95 - 3785965 ACTCAGCCTGTGCCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCGTTTTCAAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628666 95 - 90373283 ACTCAGCCTGTGCCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCATTTTCAAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518115 95 + 6149316 ACTCAGCCTGTGCCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCGTTTTCAAAACTGGAGACAGGACTCCCACATGGTCA----GCAT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739628 95 - 5823884 ACTCAGCCTGTGCCCTGAGAAGTGACCACAG----CTCTG-----AACACTCCAGGATTTAAGCGTTTTCAAAACTGGAGACAGGACTCCCACGTGGTCA----GCAT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452185 95 + 159171411 AGTCAGCCTGTGCCCTCAGAAGTGACCACAG----TTCAA-----AACACTCCAGGATCTAAGCCTTTTCAAAACTGGAGGTAGGCCTCTCACATGGTCA----GCAT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570321 93 + 16356641 ACTCAGCCTGTG--CTCAGAAGTGACCACAG----TTCAA-----CACACTCCAAGATCCAAGCCTTTACAAATCTGGAGGCAGGCCTCCCGTGTGGTCG----GCAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419568 95 + 1231380 ACTCAGCCTGTGTTCTCCGAAGTGACCACAG----TTCAA-----AACACTCCAGGATCTAAGCCTTTTCAAAACTGGAGGCAGGCCTCCCACCTGGTCG----GCAT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1976841 95 + 11732439 ACTCAGCCTGTGCCCTCGGAAGTGACCACAG----CTCAA-----AACACTCCAGGATCTAAGCCTTTTTAAAGCTGGAGGCCGGCCTCCCACGTGATCA----GCAT i aotNan1.NW_018500483v1 I 28 I 49 s otoGar3.GL873542 22188671 103 + 22939663 ACTCAG-TTGTGCTTATGAAAGTGATTGCAG----TTTCTTCAAAAACACTCCAGGAGTTAAGCATTTTCAAAATTGGAGGTGGGCCTCCCACACAGACAGCTGGCAT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181130815 78 + 182113224 GCTCCAGCTGTATTATCAGACACTGTCACTGACTCCTCAG----ATTCACTCCAGAGTCAAGTCATTT----------------------CAGACATTCA----GCAT i mm10.chr2 C 0 C 0 e canFam3.chr24 47095500 2364 + 47698779 I a score=441952.000000 s hg38.chr20_KI270871v1_alt 55381 73 + 58661 CCTGGGGGCCGAGAATC-----------------------------------CTTAG-TGCCCAGCAGT-------------------------------------------------------------------GCCCATATCCAGGGCGCCGGCACCTCTGG-----------------------------------------------AGAGACCGCGT------------ s panTro5.chr20 65631527 73 + 66533130 CCTGGGGGCCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCGCCGGCACCTCTGG-----------------------------------------------AGAGACCGCGT------------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390743 73 + 62195757 CCTGGGGGCCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GTCCACATCCAGGGCGCCGGCACCTCTGG-----------------------------------------------AGAGACCGCGT------------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805140 73 - 1017659 CCTGGGGGCCGAGAATC-----------------------------------CTTAG-TGCCCAGCGGT-------------------------------------------------------------------GCCCACATCCAGGGCGCCGGCACCTCTGG-----------------------------------------------AGAGACCGCGT------------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295860 73 - 110113093 CCTGGGGGCCGAGAATC-----------------------------------CTTAG-TGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGTGCCGGCACCTCTAG-----------------------------------------------AGAGACTGCGT------------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012856 73 - 92844088 CCTGGGGGTCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCACCGGCGCCTCTGG-----------------------------------------------AGCGACCGCGT------------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662112 73 + 96509753 CCTGGGGGTCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCACCGGCGCCTCTGG-----------------------------------------------AGCGACCGCGT------------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16112994 73 - 16982598 CCTGGGGGTCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCACCGGCGCCTCTGG-----------------------------------------------AGCGACCGCGT------------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2960986 73 - 3785965 CCTGGGGGTCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCACTGGCGCCTCTGG-----------------------------------------------AGCGACCGCGT------------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628761 73 - 90373283 CCTGGGAGTCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCACCGGCGCCTCTGG-----------------------------------------------AGCGACCGCGT------------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518210 73 + 6149316 CCTGGGGGTCGAGAATC-----------------------------------CTTAG-CGCCCAGCAGT-------------------------------------------------------------------GCCCACATCCAGGGCACTGGCGCCTCTGG-----------------------------------------------AGCGACCGCGT------------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739723 73 - 5823884 CCTGGGGGTCGAGAATC-----------------------------------CTTAG-TGCCCAGCAGG-------------------------------------------------------------------GCCCACATCCAGGGCACCGGCGCCTCTGG-----------------------------------------------AGAGACCGCAT------------ i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452280 49 + 159171411 TGCGGAGGCCAAGAATC-------------------------------------------CCCAGCAGT-------------------------------------------------------------------GCCCACACTCAGGCCACCGGCGC---------------------------------------------------------------------------- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570414 66 + 16356641 TGGGGAGGCCGAGAATC-------------------------------------------CCCGGCAGT-------------------------------------------------------------------GCCCACGTCCTGGCTACCGGGGCCTCTGT-----------------------------------------------ACAGGCCACAT------------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419663 66 + 1231380 TGGGGAGGCCGAGAACC-------------------------------------------CCCGGCAGT-------------------------------------------------------------------GCCCACATCCAGGCCACCGGGGCCTCTGT-----------------------------------------------AGAGGCCACAT------------ i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22188774 222 + 22939663 CTGGGGGACCGGCAGTGTCCACATCAGGGGCCTTGAGGCATGACCAGCTGAACTTAGCCTCCTGGCAGTGACTGGTTTGAATACTTGACTTATACTGCTTTCTAATAAAACTGAGACTTTCAggccgtgctcagtggctcacacctataatcccagcac-tctgggggccgaggcgggtagattgcctgagctcacgagtttgagaccagccagagccagtgt------------ i otoGar3.GL873542 C 0 I 10 s mm10.chr2 181130893 78 + 182113224 -CTGGGTGC-----ATT-----------------------------------CCCAG-GACCTAGTAGT-------------------------------------------------------------------CTCCATGTCAAAGTTCTCCAGGCTGGTG------------------------------------------------ATATGCTGTGTGTCCTTCTAAGT i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1976936 49 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=310873.000000 s hg38.chr20_KI270871v1_alt 55454 36 + 58661 CTCTGCAGAGATTGGCTTG-------------------------CA------------GTGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- s panTro5.chr20 65631600 36 + 66533130 CTCTGCAGAGATTGGTTTG-------------------------CA------------GTGACT-----------------------------------------------------------------------------------------------------TCTAATAAA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390816 36 + 62195757 CTCTGCAGAGATTGGCTTG-------------------------CA------------GTGACT-----------------------------------------------------------------------------------------------------TCTAATAAA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805213 36 - 1017659 CTCTGCAGAGATTGGCTTG-------------------------CA------------GTGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295933 36 - 110113093 CTCTGCAGAGATTGGCCGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012929 36 - 92844088 CTCTGCAGAGATTGGCTGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662185 36 + 96509753 CTCTGCAGAGATTGGCTGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113067 36 - 16982598 CTCTGCAGAGATTGGCTGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961059 36 - 3785965 CTCTGCAGAGATTGGCTGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628834 36 - 90373283 CTCTGCAGAGATTGGCTGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518283 36 + 6149316 CTCTGCAGAGATTGGCTGG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739796 36 - 5823884 CTCTGCAGAGATTGGCTTG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452329 36 + 159171411 CTCTGCAGAGATTGGGTTG-------------------------CA------------GCAATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570480 36 + 16356641 CTCTGCAGAGATTGACTTG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419729 36 + 1231380 CTCTGCAGAGATTGGCTTG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i cebCap1.NW_016107870v1 C 0 I 65 s aotNan1.NW_018500483v1 1976985 36 + 11732439 CTCTGCAGAGATTGGCTTG-------------------------CA------------GCGATT-----------------------------------------------------------------------------------------------------TCTAATAAA- i aotNan1.NW_018500483v1 I 49 C 0 s otoGar3.GL873542 22189006 160 + 22939663 --ctctaaaaaatagctgggcattatggcaggtgactgtagtccca------------gctactcaggaggctgaagcaagagaatcacttgagcccaagagtttgaggttgctgtgagctatgacaccacagcactctaccaagggcaacaaaatgagattctgtctcaaaaa- i otoGar3.GL873542 I 10 I 6 s mm10.chr2 181130971 49 + 182113224 CTCCATATAGATGGCTTTA-------------------------CATGTCCGACTCATGCTGGT-----------------------------------------------------------------------------------------------------ATCCATAAAA i mm10.chr2 C 0 C 0 e canFam3.chr24 47095500 2364 + 47698779 I a score=292517.000000 s hg38.chr20_KI270871v1_alt 55490 38 + 58661 ACAGATTTTCTCTGC-TCTCA-CTGTGGAATGGTCAGGAG s panTro5.chr20 65631636 38 + 66533130 ACAGATTTTCTCTGC-TCTCA-CTGTGGAATGGTCAGGAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390852 38 + 62195757 ACAGATTTTCTCTGC-TCTCA-CTGTGGAATGGTCAGGAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805249 38 - 1017659 ACAGATTTTCTCTGC-TCTCA-CTGTGGAATGGTCAGGAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109295969 38 - 110113093 ACAGATTTTCTCTGC-TCTAA-CTGTGGAATGGTCAGGAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92012965 38 - 92844088 ACGGATTTCCTCTGC-TCTAA-CTGTGGAAGGATCAGGAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662221 38 + 96509753 ACGGATTTCCTCTGC-TCTAA-CTGTGGAAGGATCAGGAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113103 38 - 16982598 ACGGATTTCCTCTGC-TCTAA-CTGTGGAAGGATCAGGAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961095 38 - 3785965 ACGGATTTCCTCTGC-TCTAA-CTGTGGAAGGATCAGGAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628870 38 - 90373283 ACGGATTTCCTCTGC-TCTAA-CTGTGGAAGGATCAGGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518319 38 + 6149316 ACGGATTTCCTCTGC-TCTAA-CTGTGGAAGGATCAGGAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739832 38 - 5823884 ACGGATTTCCTCTGC-TCTAA-CTGTGGAATGATCAGGAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452365 39 + 159171411 TCGGGTTTTCCCTGC-TGTAACCTGTGGGATGATCAGGAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570516 39 + 16356641 TGAGGTTTTCCCTGC-TGTGACCTGTGGGATGATCAAGAG i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1977021 39 + 11732439 TCAGGTTTTCCCTGC-TGTCACCTGTGGGATGATCAGGAG i aotNan1.NW_018500483v1 C 0 I 22 s otoGar3.GL873542 22189172 40 + 22939663 TGAGATTTTCTCAGCAGCTAATGTGTGAAATTGCAAAGAA i otoGar3.GL873542 I 6 I 1 s mm10.chr2 181131020 37 + 182113224 ATGAGATTTCTCTGC-TCTCATCTGCAACCCTGCCCAG-- i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 419765 65 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=145813.000000 s hg38.chr20_KI270871v1_alt 55528 24 + 58661 GAGAGTTTCTGCTTATCCTTTAGC s panTro5.chr20 65631674 24 + 66533130 GAGAGTTTCTGCTTATCCTTTAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390890 24 + 62195757 GAGAGTTTCTGCTTATCCTTTAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805287 24 - 1017659 GAGAGTTCCTGCTTATCCTGTAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296007 23 - 110113093 GAGAGTT-CTGCTTATCCTTTAGC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013003 24 - 92844088 GAGCGTTCCTGCTTACCCGTTAGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662259 24 + 96509753 GAGCGTTCCTGCTTACCCGTTAGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113141 24 - 16982598 GAGCGTTCCTGCTTACCCGTTAGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961133 24 - 3785965 GAGCGTTCCTGCTTACCCGTTAGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628908 24 - 90373283 GAGCGTTCCTGCTTACCCGTTAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518357 24 + 6149316 GAGCGTTCCTGCTTACCCGTTAGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739870 24 - 5823884 GAGCATTCCTGCTTACCCGTTAGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452404 20 + 159171411 ----CTTCCTGCTAAGCCACTAGT i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15570555 20 + 16356641 ----CTTCCTGCTAACCCACTAGT i saiBol1.JH378156 C 0 I 2 s otoGar3.GL873542 22189213 24 + 22939663 TAAGCTTCCTATCTACCTGTTATA i otoGar3.GL873542 I 1 I 11 s mm10.chr2 181131057 24 + 182113224 AATGCTCCCTGGCTAGTTGCTAAT i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1977060 22 + 11732439 I e cebCap1.NW_016107870v1 419765 65 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=40998.000000 s hg38.chr20_KI270871v1_alt 55552 5 + 58661 TCCTA--- s panTro5.chr20 65631698 5 + 66533130 TCCTA--- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390914 5 + 62195757 TCCTA--- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805311 5 - 1017659 TCCTA--- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296030 5 - 110113093 TCCTA--- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013027 5 - 92844088 TCCCA--- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662283 5 + 96509753 TCCCA--- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113165 5 - 16982598 TCCCA--- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961157 5 - 3785965 TCCCA--- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628932 5 - 90373283 TCCCA--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518381 5 + 6149316 TCCCA--- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739894 5 - 5823884 TCCCA--- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452426 5 + 159171411 TCCCA--- i calJac3.chr5 I 2 C 0 s saiBol1.JH378156 15570577 5 + 16356641 TCCCA--- i saiBol1.JH378156 I 2 C 0 s aotNan1.NW_018500483v1 1977082 5 + 11732439 TCCCA--- i aotNan1.NW_018500483v1 I 22 C 0 s otoGar3.GL873542 22189248 5 + 22939663 TTCTG--- i otoGar3.GL873542 I 11 C 0 s mm10.chr2 181131081 6 + 182113224 --CCATCA i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 419765 65 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=507677.000000 s hg38.chr20_KI270871v1_alt 55557 66 + 58661 TCCTCTCACAGACAC-AGAATGTGCACAGAGATTGACTCCACT------GTGTAACTAAGCAGCATCAT-GTAC s panTro5.chr20 65631703 66 + 66533130 TCCTCTCACAGACAC-AGAATGTGCACAGAGGTTGACTCCACC------GTGTAACTAAGCAGCATCAT-GTAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390919 66 + 62195757 TCCTCTCACAGACAC-AGAATGTGCACAGAGGTTGACTCCACC------GTGTAACTAAGCAGCATCAT-GTAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805316 66 - 1017659 TCCTCTCCCAGACAC-AGAATGTACACAGAGATTGACTCCACC------GTGTAACTGAGCAGCATCAC-GTAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296035 50 - 110113093 TCCTCTCGCAGACAC-AGAATGTGGATAGAGATGGACTCCACC------GTGTAACT----------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013032 70 - 92844088 TCCTCTCGCAGACAC-AGAATGTG--CAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAGCGTCGT-GTAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662288 70 + 96509753 TCCTCTCGCAGACAC-AGAATGTG--CAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAGCGTCGT-GTAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113170 70 - 16982598 TCCTCTCGCAGACAC-AGAATGTG--CAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAGCATCAT-GTAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961162 72 - 3785965 TTCTCTCGCAGACAC-AGAATGTGCACAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAGCGTCGT-GTAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89628937 70 - 90373283 TCCTCTCGCAGACAC-AGAATGTG--CAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAGCGTCGT-GTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518386 72 + 6149316 TCCTCTCGCAGACAC-AGAATGTGCACAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAGCGTCGT-GTAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739899 72 - 5823884 TCCTCTCGCAGACGC-AGAATGTGCACAGAGACTGACTCCACCTCCACTGTGTAACGAGGCAACGTCAC-GTAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452431 66 + 159171411 TCCTCTTGCAGACAC-AGAACATGCATAGTGATTGACTCCACC------ATGTATCTAGGCAGAGTCAT-TTAC i calJac3.chr5 C 0 I 303 s saiBol1.JH378156 15570582 66 + 16356641 TCCTCTTCCAGACAC-AGAACGTGCACCGTGACTGACTCCACC------GTGTACCTAGGGAGAGTCAT-TTAC i saiBol1.JH378156 C 0 I 335 s cebCap1.NW_016107870v1 419830 66 + 1231380 TCCTCTTGCAGACAC-AGAACGTACACAGTGACTGACTCCACC------GTGTACCTAGGCAGAGTCAT-TTAC i cebCap1.NW_016107870v1 I 65 C 0 s aotNan1.NW_018500483v1 1977087 66 + 11732439 TCCTCTTGCAGACAC-AGAACGTGCGTAGTGACTGACTCCACC------GTGTACCTAGGCAGAGTCAT-GTAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22189253 67 + 22939663 TTACCTCACAGATACAAGAATGTTTATTGAGATTTATTCTATA------ATGTAATTAAACATAGTGATAATA- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131087 60 + 182113224 TTTCTTTACAGATGC-A-AGGATGCTTAAAGATTTA---CACATAACCAGAGCAAAGAGACTGCA--------- i mm10.chr2 C 0 C 0 e canFam3.chr24 47095500 2364 + 47698779 I a score=19780.000000 s hg38.chr20_KI270871v1_alt 55623 3 + 58661 AAT- s panTro5.chr20 65631769 3 + 66533130 AAT- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390985 3 + 62195757 AAT- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805382 3 - 1017659 AAT- i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92013102 3 - 92844088 AAC- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662358 3 + 96509753 AAC- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113240 3 - 16982598 AAC- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961234 3 - 3785965 AAC- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629007 3 - 90373283 AAC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518458 3 + 6149316 AAC- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739971 3 - 5823884 AAC- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452800 3 + 159171411 aat- i calJac3.chr5 I 303 C 0 s saiBol1.JH378156 15570983 3 + 16356641 aaT- i saiBol1.JH378156 I 335 C 0 s cebCap1.NW_016107870v1 419896 3 + 1231380 AAT- i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1977153 3 + 11732439 AAT- i aotNan1.NW_018500483v1 C 0 I 322 s otoGar3.GL873542 22189320 3 + 22939663 AAC- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131147 3 + 182113224 -ATT i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109296085 0 - 110113093 C e canFam3.chr24 47095500 2364 + 47698779 I a score=19925.000000 s hg38.chr20_KI270871v1_alt 55626 3 + 58661 GTC s panTro5.chr20 65631772 3 + 66533130 GTC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390988 3 + 62195757 GTC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805385 3 - 1017659 GTC i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92013105 3 - 92844088 GTC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662361 3 + 96509753 ATC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113243 3 - 16982598 ATC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961237 3 - 3785965 ATC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629010 3 - 90373283 ATC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518461 3 + 6149316 ATC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739974 3 - 5823884 ATC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452803 3 + 159171411 att i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15570986 3 + 16356641 ATT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 419899 3 + 1231380 ATT i cebCap1.NW_016107870v1 C 0 I 319 s otoGar3.GL873542 22189323 3 + 22939663 ATT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131150 3 + 182113224 ATT i mm10.chr2 C 0 C 0 e nomLeu3.chr13 109296085 0 - 110113093 C e aotNan1.NW_018500483v1 1977156 322 + 11732439 I e canFam3.chr24 47095500 2364 + 47698779 I a score=628157.000000 s hg38.chr20_KI270871v1_alt 55629 75 + 58661 TTATCACTCCAGAGTAATTTCACTTTAAATTATTTGGTGAGGGGCAGAAATCCTGCGAGGAAGCCCGAGACCTCC s panTro5.chr20 65631775 75 + 66533130 TTATCACTCCAGAGTAATTTCACTTTAAATTATTTGGTGAGGGGCAGAAATCCTGCGAGGAAGCCCGAGACCTCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61390991 75 + 62195757 TTATCACTCCAGAGTAATTTCACTTTAAATTATTTGGTGAGGGGCAGAAATCCTGCGAGGAAGCCCGAGACCTCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805388 75 - 1017659 TTATCACTCCAGAGTAATTTCACTTTAAATTATTTGGTGAGGGGCAGAAATCCTGCGAGGAAGCCCGAGACCTCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296085 14 - 110113093 -------------------------------------------------------------AGCCCGAGGCCTCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013108 72 - 92844088 TTACCACTC--GAGTAATCTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAGGCCCAAGACCTCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662364 72 + 96509753 TTACCACTC--GAGTAATCTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAGGCCCAAGACCTCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113246 72 - 16982598 TTACCACTC--GAGTAATCTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAGGCCCAAGACCTCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961240 74 - 3785965 TTACCACTCCAGAGTAATCTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAGGCCCAAGACCTCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629013 74 - 90373283 TCATCACGCCAGAGTAATTTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAAGCCCGACACCTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518464 74 + 6149316 TTACCACTCCAGAGTAATCTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAGGCCCAAGACCTTC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4739977 74 - 5823884 TTATCACTCCAGAGTCATTTCACTTTAAATTATTTGGTGAGGGACAG-AATCCTGCGAGGAAGCCCAAGACCTCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452806 73 + 159171411 ttatCACTCCATAGTAATTTCA--CTAAATTATTTGGTGAGGAACAGAAATCCTGCCAGGAGGCCCAAGACCTCC i calJac3.chr5 C 0 I 8 s saiBol1.JH378156 15570989 75 + 16356641 TTATCACTCCACAGTAACTTCAATTTAAATTATTTGGTGAGGGACAGAAATCCTGACAGGGGGCCCAAGACCTCC i saiBol1.JH378156 C 0 I 8 s cebCap1.NW_016107870v1 420221 75 + 1231380 TTATCACTCCAGAGTAGTTTCGCTTTAAATTATTTGGTGAAGGACAGAAATCCTGCCAGGAGACCCAAGACCTCC i cebCap1.NW_016107870v1 I 319 I 57 s aotNan1.NW_018500483v1 1977478 75 + 11732439 TTATCACTCCATAGTAATTTCACTTTAAATTATTTGGTGAGGGACAGAAATCCTGCCAGGAGGCCCAAGACCTCC i aotNan1.NW_018500483v1 I 322 I 8 s otoGar3.GL873542 22189326 63 + 22939663 TTGTCATGTCACAGTAATTTCATTTTAAATTATCTGGTGAAGGACAG-AGTCCTTTGAG-----------CCTCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131153 59 + 182113224 CTTTCTCTCCAGTG------CCCTTTAAGATATC-AGTGAGGGTTAGAAAC----TGAGCAGGCCTGAGA----- i mm10.chr2 C 0 C 0 e canFam3.chr24 47095500 2364 + 47698779 I a score=175804.000000 s hg38.chr20_KI270871v1_alt 55704 22 + 58661 CAAGGGG------TCCAGGAACCA-GAGA s panTro5.chr20 65631850 22 + 66533130 CGAGGGG------TCCAGGAACCA-GAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61391066 22 + 62195757 CGAGGGG------TCCAGGAACCA-GAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805463 22 - 1017659 CGAGGGG------CCCAGGAACCA-GAGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296099 22 - 110113093 CGAGGGG------CCCAGGAACCA-GAGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013180 22 - 92844088 CGAGGGG------CCCAGGAACCA-GAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662436 22 + 96509753 CGAGGGG------CCCAGGAACCA-GAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113318 22 - 16982598 CGAGGGG------CCCAGGAACCA-GAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961314 22 - 3785965 CGAGGGG------CCCAGGAACCA-GAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629087 22 - 90373283 CGAGGGG------CCCAGGAACCA-GAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518538 22 + 6149316 CGAGGGG------CCCAGGAACCA-GAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4740051 22 - 5823884 CGAGGGG------CCCAGGAACCA-GAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452887 25 + 159171411 CAAGGGAAGC---CCAAGGAACCA-AAGA i calJac3.chr5 I 8 C 0 s saiBol1.JH378156 15571072 25 + 16356641 CGAGGGAAGC---CCGAGGAGCCA-CAGA i saiBol1.JH378156 I 8 C 0 s aotNan1.NW_018500483v1 1977561 25 + 11732439 CAAGGGATGC---CCGAGGAACCA-AAGA i aotNan1.NW_018500483v1 I 8 C 0 s otoGar3.GL873542 22189389 22 + 22939663 CAACAGG------CCTGGGGAGTC-TGAT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131212 27 + 182113224 --AGGTGGGCAAACCCAGGCCCCATGAGA i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 420296 57 + 1231380 I e canFam3.chr24 47095500 2364 + 47698779 I a score=275020.000000 s hg38.chr20_KI270871v1_alt 55726 25 + 58661 AATCCAGGTTTCCCCAGAAACCACA s panTro5.chr20 65631872 25 + 66533130 AATCCAGGTTTCCCCGGAAACCACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61391088 25 + 62195757 AATCCAGGTTTCCCCGGAAACCACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805485 25 - 1017659 AATCCAGGTTTCCCCAGAAACCACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296121 25 - 110113093 AATCCAGGTTTCCCCGGAAACCACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013202 25 - 92844088 AGTCCAGGTTTCCCCGGAAACCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662458 25 + 96509753 AGTCCAGGTTTCCCCGGAAACCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113340 25 - 16982598 AGTCCAGGTTTCCCCGGAAACCACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961336 25 - 3785965 AGTCCAGGTTTCCCCGGAAACCACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629109 25 - 90373283 AGTCCAGGTTTCCCCGGAAACCACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518560 25 + 6149316 AGTCCAGGTTTCCCCGGAAACCACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4740073 25 - 5823884 AGTCCAGGTTTCCCCGGAAACCACA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452912 24 + 159171411 AAT-CAGGTTTCCCTGGAAACCATT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15571097 24 + 16356641 AAT-CAGGTTTCCCTGGAAGCCACC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1977586 24 + 11732439 AAT-CAGGTTTCTCTGGAAGCCGCC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22189411 25 + 22939663 AAACCAGGTTTCCCTGGAAACTACA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131239 25 + 182113224 AACACAGGTTTCTCTGGAAACCACA i mm10.chr2 C 0 C 0 s canFam3.chr24 47097864 25 + 47698779 AGCCCCGGTCGCCCTGGAAACCACA i canFam3.chr24 I 2364 C 0 e cebCap1.NW_016107870v1 420296 57 + 1231380 I a score=3262945.000000 s hg38.chr20_KI270871v1_alt 55751 407 + 58661 ACTCTCCGAGGCTTCTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CACAGGAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCGTTCAAGCACTCGAGTCTCTTTCTCGGCACACAATGCTCCGTCAGCAGAGACTGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGAGTGTCTGAACCCCACCAC-TG-----TGCCAGGCGCCTGCCCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCCCAGAGCTGAATGA-----AGGGGTGGGAAAGAGGCCCA------GCGGCC-TGTG-CTCAGCACCACCCGAGTTCTCCAGGACTGTG-AGGGGAAGCGCCTGGGCCCCG---GCACCGGGGGACTTGAAC s panTro5.chr20 65631897 407 + 66533130 ACTCTCCAAGGCTTCTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CACAGCAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCGTTCAAGCACTCGAGTCTCTTTCTCGGCACACAATGCTCCGTCAGCAGAGACTGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGAGTGTCTGAACCCCACCAC-TG-----TGCCGGGCGCCTGCCCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCCCAGAGCTGAATGA-----AGGGGTGGGAAAGAGGCCCA------GCGGCC-TGTG-CTCAGCACCACCCGAGTTCTCCAGGACTGTG-AGGGGAAGCGCCTGGGCCCCG---GCACCGGGGGACTTGAAC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61391113 407 + 62195757 ACTCTCCAAGGCTTCTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CACAGCAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCGTTCAAGCACTCGAGTCTCTTTCTCGGCACACAATGCTCCGTCAGCAGAGACTGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGAGTGTCTGAACCCCACCAC-TG-----TGCCGGGCGCCTGCCCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCCCAGAGCTGAATGA-----AGGGGTGGGAAAGAGGCCCA------GCGGCC-TGTG-CTCAGCACCACCCGAGTTCTCCAGGACTGTG-AGGGGAAGCGCCTGGGCCCCG---GCACCGGGGGACTTGAAC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805510 407 - 1017659 ACTCTCCGAGGCTTCTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CACAGGAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCATTCAAGCACTCGAGTCTCTTTCTCGGCACACAATGCTCCGTCAGCAGAGACTGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGAGTGTCTGAACCCCACCAC-TG-----TGCCGGGCGCCTGCCCACCCCAGCCAGCCCTGCGAGGGCTCACACCAGCCTCAGAGCTGAATGA-----ACGGGTGGGAAAGAGGCCCA------GCGGCC-TGTG-CTCAGCACCACCCGAGTTCTCCAGGACTGTG-AGGGGAAGCGCCTGGGCCCCG---GCACCGGGGGACTTGAAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296146 407 - 110113093 ACTCTCCGAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CGCAGGAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCGTTCAAGCACTCGAGTCTCTTTCTTGGCACACAATGCTCCGTCAACAGAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGTCTGAC-CAAGAAGAGAGTGTCTCAACCTCACCAC-TG-----TGCCGGGCACCTGCCCACCCCAGCCAGCCCTTCGAGGGCTCAGACCAGCCTCAGAGCTGAACGC-----AGGGGTGGGAGAGGGGCCTG------GCAGCC-TGTG-CTCAGCACCACCCGAGTTCTCCAGGACTGTG-AGGGGAAGCGCCTGGGCCCCA---GCACCGGGGGACTTGAAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013227 389 - 92844088 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TTGGAAG--------------AAGCAGA--ATGTGGCCGTTCAAACGCTCAAGTCTCTTTCTTGGCACACAATGCTCCGTCAGCAAAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGTTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAAG--------------------G-----TGCCGGGCGCCTGCTCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCTCTGAGCTGAACGC-----GGGGGTGGGAGAGGGGCCCG---G--GCAGCC-TGTG-CTCAGCACCATCCGAGTTATCCAGGACTGTG-AGGGGACACGCCTGGGCCCCG---GCACAAGGGGACTTGAAC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662483 389 + 96509753 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TTGGAAG--------------AAGCAGA--ATGTGGCCGTTCAAACGCTCAAGTCTCTTTCTTGGCACACAATGCTCCGTCAGCAAAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGTTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAAG--------------------G-----TGCCGGGCGCCTGCTCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCTCTGAGCTGAACGC-----GGGGGTGGGAGAGGGGCCCG---G--GCAGCC-TGTG-CTCAGCACCATCCGAGTTATCCAGGACTGTG-AGGGGACACGCCTGGGCCCCG---GCACAAGGGGACTTGAAC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113365 389 - 16982598 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TTGGAAG--------------AAGCAGA--ATGTGGCCGTTCAAACGCTCAAGTCTCTTTCTTGGCACACAATGCTCCGTCAGCAAAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGTTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAAG--------------------G-----TGCCGGGCGCCTGCTCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCTCTGAGCTGAATGC-----GGGGGTGGGAGAGGGGCCCG---G--GCAGCC-TGTG-CTCAGCACCATCCGAGTTATCCAAGACTGTG-AGGGGACACGCCTGGGCCCCG---GCACAAGGGGACTTGAAC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961361 389 - 3785965 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TTGGAAG--------------AAGCAGA--ATGTGGCCGTTCAAACGCTCAAGTCTCTTTCTTGGCACACAATGCTCCGTCAGCAGAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCTTCAAA-GCAGCCTGAC-CAAGAAGAGA--------------------G-----TGCCGGGCGCCTGCTCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCTCTGAGCTGAACGC-----GGGGGTGGGAGAGGGGCCCG---G--GCAGCC-TGTG-CTCAGCACCATCCGAGTTATCCAGGACTGTG-AGGGGACACGCCTGGGCCCCG---GCACAAGGGGACTTGAAC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629134 388 - 90373283 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------AGGGAAG--------------AAGCGGA--ATGTGGCCATTCAAACATTCAAGTCTCTTTCTTGGCACATAATGCTCCGTCAGCAGAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGA--------------------G-----TGCCGGGCGCCTGCTCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCTCAGAGCTGAACGA-----GGGGGTGGGAGAGAGGCCCA---G--GCAGCC-TGTG-CTCAGCACCATCTGAGTTATCCAGGACTGTG-AGGGGACACACCTGGGCCCCG---GCACAAGGGGACTTGAA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518585 389 + 6149316 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TTGAAAG--------------AAGCAGA--ATGTGGCCGTTCAAACGCTCAAGTCTCTTTCTTGGCACACAATGGTCCGTCAGCAGAGACCGGACCCTGGTCCTGCCAGGGCCCCGCTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGA--------------------G-----TGCCGGGCGCCTGCTCACCCCAGCCAGCCCTTCGAGGGCTCACACCAGCCTCTGAGCTGAACGC-----GGGGGTGGGAGAGGGGCCCG---G--GCAGCC-TGTG-CTCAGCACCATCTGAGTTATCCAGGACTGTG-AGGGGACACGCCTGGGTCCCG---GCACAAGGGGACTTGAAC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4740098 388 - 5823884 ACTCTCCAAGGCTTTTTCACCTTTTGGGAAATTTCCATAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TGGGAAG--------------AAGCGGA--ATGTGGCCGTTCAAACACTCAAGTCTCTTTCTTGGCACAAAATGCTCCGTCAGCAGAGACCGGACCCTGGTCCTGCCAGGGCCCCACTCTGTGCTG--------GGTAAAGCCCAGG-----CCTGCACTCACCCCTCAAA-GCAGCCTGAC-CAAGAAGAGA--------------------G-----TGCC-GGCGCCTGCTCACCCCAGCCAGCCCTTCAAGGGCTCACACCAGCCTCAGAGCTGAACGC-----AGGGGTGGGAGAGGGGCCTG---G--GCGGCC-TGTG-CTCAGCACCATCCGAGTTATCCAGGACTGTG-AGGGGAAGCGCCTGGGCCTCG---GCAGGAGGGGACTTGAAC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57452936 359 + 159171411 GCTCTCTGAGGCTTTTTCACCTTTCGGGAAATTTCCGTAAGATT--------------------------TCCT---------A----------------------CCCAGGAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGTCTTTCAAACACTTGAGTCTCTTTCTCAGCACAAAATGCTCCGTCAGCAAAGACCGGACCCTGATCTCGCCCGGGGCCCCCTCTGTGCTA--------GGTACGGCC------------------------TAAA-GCAGCCCTAC-CAAGAA-AGAGCGGCCAA------------------------------GCACACCCCAGCCGGCCCTCCCAGGACTCACACCTGCTTTGGAGCTGAA---------GAGGTGGG--AGGGGCCAG------GCAGCCTTGTG-CCCGGCACCACCCGAGTTATCCAGGGCTGTGTGGAGGAAGTGCCTGGGCCCTG---ACAGCAGGCGACCTGAAC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15571121 367 + 16356641 GCTCTCTGAGGCATTTTCA---------------CCATAGGATT--------------------------TCCT---------A----------------------CCTGGGA-GCTG-------------CAGGAAG--------------AAGGGGA--ATGTGGCCTTTCAAACACTTGAG--TCTGTCTCCGCACAAAATGTTCCGTCAGCAAAGACCGGACCCTGGTCCCGTCCGGGTCCCCCTCTGTGCTG--------GATACGGCC------------------------TAAA-GCAGCCCTAC-CAAGAAGAGAGCGGCCGCACCCACCCCC--GCCCCCTGCCTGGCA-CTGCCCACCCCAGCCGGCCCTCCCAGGGCTCGAACCTGCTTCAGAGCTGAA---------GGAGTAGG--AGGCGCCTA------GCCACC-TGTG-CCCAGCACCACCCGAGTTATCCA-GGCTGTGTGGGGGAATCGCCTGGGCCCCA---ACAGCAGGCGACCTGAAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 420353 380 + 1231380 ACTCTCTGTGGCTTTTTCACCTTTCGGGAAATTTCCGTAAAATT--------------------------TCCT---------A----------------------CACAGGA-GCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCTTTCAAACACTCGAGTCTCTTTCTCTGCATAAAATGCTCCATCAGCAAAGACCGGACCCTGGTCCGGCCCGGGTCCCCCTCTGTGCTG--------GGTACGACC------------------------TAAA-GCAGCCCTAC-CAAGAAGAGAGCGGCCAAACCCACCCCC--G-----TGCCTGGCA-CTGCCCACCCCAGCCGGCCTTCCCAGGGCTCGCACCTGCCTCGGAGCTGAA---------GGGGTGGG--AGGGGCCGG------GCCGCC-TGTG-CCCAGCAACACCTGAGTTATCCAGGGCTGTGTGGGGGAATCGCCTGGGCCCCG---ACAGCGGGCGGCCTGAAC i cebCap1.NW_016107870v1 I 57 I 22 s aotNan1.NW_018500483v1 1977610 382 + 11732439 GCTCTCTGAGGCTTTTTCACCTTTCAGGAAATTTCTGTAAGATT--------------------------TCCC---------A----------------------CCCAGGAGGCTG-------------TGGGAAG--------------AAGGGGA--ATGTGGCCTTTCAAACACTCCAGTCTCTTTCTCGGCACAAAATGCTCCATCAGCAAAGACCGGATCCTGGTCCCGCCCGGGTCCCCCTCTGTGCTG--------GGTACAGCC------------------------TAAA-GCAGCCCTAC-CAAGAAGAGAGCGGCCGAACCCACCCCT--G-----CGCCCGGAG-CTGCCCACCCCAGCCAGCCCTCCCAGGGCTCGCATCTGCTTCGGAGCTGAA---------GGGGTGGG--AGGGGCCGG------GCAGCC-TGGGCCCCGGCACAACCCGAGTTATCCAGGGCTGTGTGGGGGAATCGCCTGGGCCCCG---ACAGCGGGCGACCTGAAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22189436 349 + 22939663 ACCCTCAGAGGTGCTTTCCCCTTTTGGGAAATTTCCATAAAATTCTTAAATTCTTCAATCGATAGACACCTCCT---------A----------------------CCCAGTAGGCTA-------------CAGGAAGGCCTCCAACTGGAAAGGAGAG--ACATGACCTCTCAGAGACCCATGTCTTTCTCTTGGCTCAAAATGCTCTGTCAGC--AGACCAGA-CCTGGCCCTGTGGGGACCCC------TGCTGCCAGAGTCAGCACAACC-AGA-----CATACAGTTACCCCTCAAAGGCAG-----C-CAGGAGGAGA--------------------T-----TGGCCAACA-------ACTCCA-----------------TCACACC----------------------------TGGGA-AGCACCCCA---GTTGCACAC-AAGG-CTCA----------------TGAAGGCTGGA-AG----CTTTCCTGTCCTCCC---CTGCAGGATG-------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131264 377 + 182113224 ACTCTCTGAGGTATTTCCATCTTTTGGGAAAATTCCATAAGATT--------------------------CTCTGAATTCTCGA----------------------TCAATGAGGCTA-------------CAGGAAG-----------------------GCCTGCTACTTGAAAGA----AG-------CTGGGCACACGACAC-CATTCAGTGATAG--GGGTTCT--TCTGATCACTGCCACACACCATA-----------AGTCAGACCTGGGTACTCCGAGTGACCACCTCT-----CCTGTCTGCC-TCAGATGAGG--ATCAGAACTACTCCTCAAA-----TGAC------CCACCTACTCCAAC------TTCCATGGCCCTTGCCAGCCTCAGAGCTAAAAGCAGTTAAGGGGGATGAGAAGGACTTGCAAA--GCAGCC-TAGA------CACCATTC---TTTTGGGGGA------AGGAGGCCTATCTGGGTCCAAAGCACCCAAAGAGCCTTGAAC i mm10.chr2 C 0 C 0 s canFam3.chr24 47097889 335 + 47698779 ---------ACCGGTTCCACCTTTGGGGAAATTTCCATAAGATT--------------------------CTCC---------AACTCTTCCGGGACGCTCCCTCCCCAAGGATGCAGAGAGGTCTGTGACTTGAAAG--------------CAGGGGAGGACACAGCCACTCAGACCC---AGCCTCCTTCTGGAAACAGAATGCTC-ATCAGCAAAAA-GGGGCCCTAGCCGCCTCGGGGGCC------ACGTCG-----------------------------------ACCCTCAAAC-GCTGTCGGACGCAGGAACAGAACGGCTGGAACTC-------A-----GGCCTGAGGCC--CCCCTCCCACCCAG--------GGGCT-ACGGCGGCCCCGGACCCCCCTGC-----TGCCGTGTGGCAGGAGACCA---C--GC-----CGGG-CCCAGC---------------------------------------GGCCCCCA---GCAC----GGAC------ i canFam3.chr24 C 0 C 0 a score=104701.000000 s hg38.chr20_KI270871v1_alt 56158 24 + 58661 ATAGGCCCTCC-GTCCCAGGCCCTT s panTro5.chr20 65632304 24 + 66533130 ATAGGCCCTCC-GTCCCGGGCCCTT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61391520 24 + 62195757 ATAGGCCCTCC-GTCCCGGGCCCTT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805917 24 - 1017659 ATAGGCCCTCC-ATCCCGGGCCCTT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296553 25 - 110113093 ACAGGCCCTCCAGCCCCGGGCCCTC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013616 25 - 92844088 ATAGGCCCTCCAGCCCCGGGCCCCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662872 25 + 96509753 ATAGGCCCTCCAGCCCCGGGCCCCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113754 25 - 16982598 ATAGGCCCTCCAGCCCCGGGCCCCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961750 25 - 3785965 ATAGGCCCTCCAGCCCCGGGCCCCT i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5518974 25 + 6149316 ATAGGCCCTCCAGCCCCGGGCCCCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4740486 25 - 5823884 ATAGGCCCTCCAGCCCCGGGCCCCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57453295 21 + 159171411 -TAGACCCTCCAGCCCCGGGA-C-- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15571488 22 + 16356641 -TAGACCCTCCAGCCCCGGGACC-- i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1977992 22 + 11732439 -GAGGCCCTCCAGCCCCAGGACC-- i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22189785 8 + 22939663 ---------CCCACTCT-------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131641 22 + 182113224 -AAGGACATG--GTCCTGGATGCTA i mm10.chr2 C 0 I 1 s canFam3.chr24 47098224 6 + 47698779 --------------CCCAAG----- i canFam3.chr24 C 0 C 0 e cebCap1.NW_016107870v1 420733 22 + 1231380 I e chlSab2.chr2 89629522 0 - 90373283 C a score=6580209.000000 s hg38.chr20_KI270871v1_alt 56182 805 + 58661 CCCTGCAGTGAAATGGGACACAGCACCTGGTCAAGCAGCCCAGGGCCAG-------AGGCCCCTAAAACC----CTGGACCCCAGCT--------------GAGGCCT--------GGCGCAAA-AGCCAGGAT---GGCACAGC---------GAGCCCCAGGGACAGGCCCTCCCCGGTGCCAG-ATTTCCCATCTGGCCTATTTTAAACACAG-CTTCACTCTGGCCACTCCACGTGGCTG--GGCTGCTGGCAAGATCAAGCA--ATCTGCACCCCCAAGCTCTCA--TCTC--Aggctgggacc-ccccctttcag-ttaagcaggacaactctggagctcactcaaccttcctctgcctcagtttccccatcCACAGGAACCAGGCTGCGTGACCCTCTGGCAGGCTGTAACTAAGCGGTAACTGAGGTCCG----CACCCAGCGGGAACA----GAGCGGAGCTCCCTT-----TCCCACACCCAGCAAC-------CCACGCGGGGA-----TCCTGGACGAG---------GAGGTTCAACTCCGTGGTGGAG-----CAGTGCCCGGCTCC--------------------AGTC----CTATGCGCAGATGGGCTG--------------------CAGGAG--AGAGGCTGGAGCCCGGGATTCAGGCT--------------------CCGAAGG-------------GC-CCCCCATG---GTGATCTGG-----CCCA--GAGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-T-AGTTCG--------GG-CCAT-----------------TTCTGCAGCTCACACTCCCTTTGGGA-GGTCT-------------------GGGAGAGGTGGCCCAGCACCCC-------------GCCCCGACCAGGCAGA--------GAGCAGGTCTG------------------ACGCCCTTCTAACTCAGAGAAGGCCC-TGTCTCC---AGAGCC---TCTGGGAAAGCACCCAGGCAGTGC--GAGCAGAGGC---------CACGGCTCC-CACAGAGGAGCAACAGTGGATGAAG s panTro5.chr20 65632328 805 + 66533130 CCCTGCAGTGAAATGGGACACAGCACCTGGTCAAGCAGCCCAGGGCCAG-------AGGCCCCTGAAACC----CTGGACCCCAGCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGC---------GAGCCCCAGGGACAGGCCCTCCCCGGTGCCAG-ATTTCCCATCTGGCCTATTTTAAACACAG-CTTCACTCTGGCCACTCCACGTGGCTG--GGCTGCTGGCAAGATCAAGCA--ATCTGCACCCCCAAGCTCTCA--TCTC--Aggctgggacc-ccccctttcag-ttaagcaggacaactctggagctcactcaaccttcctctgcctcagtttccccatcCACAGGAACCAGGCTGCGTGACCCTCTGGCAGGCTGTAACTGAGTGGTAACTGAGGTCTG----CACCCAGCGGGAACA----GAGCGGAGCTCCCTT-----TCCCACACCCAGCAAC-------CCACGCGGGGA-----TCCTGGACGAG---------GAGGTTCAACTCCATGGTGGAG-----CAGTGCCCGGCTCC--------------------AGTC----CTATGCGCAGATGGGCTG--------------------CAGGAG--AGAGGCTGGAGCCCGGGATTCAGGCT--------------------CCGAAGG-------------GC-CCCCCATG---GTGATCTGG-----CCCA--GAGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-T-AGTTCG--------GG-CCAT-----------------TTCTGCAGCTCACACTCCCTTTGGGA-GGTCT-------------------GGGAGAGGTGGCCCAGCACCCC-------------GCCCCGACCAGGCAGA--------CAGCAGGTCTG------------------ACGCCCTTCTGACTCAGAGAAGGCCC-TGTCTCC---AGAGCC---TCTGGGAAAGCACCCAGGCAGTGC--GAGCAGAGGC---------CACGGCTCC-CACAGAGGAGCAACAGTGGATGAAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61391544 805 + 62195757 CCCTGCAGTGAAATGGGACACAGCACCTGGTCAAGCAGCCCAGGGCCAG-------AGGCCCCTGAAACC----CTGGACCCCAGCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGC---------GAGCCCCAGGGACAGGCCCTCCCCGGTGCCAG-ATTTCCCATCTGGCCTATTTTAAACACAG-CTTCACTCTGGCCACTCCACGTGGCTG--GGCTGCTGGCAAGATCAAGCA--ATCTGCACCCCCAAGCTCTCA--TCTC--Aggctgggacc-ccccctttcag-ttaagcaggacaactctggagctcactcaaccttcctctgcctcagtttccccatcCACAGGAACCAGGCTGCGTGACCCTCTGGCAGGCTGTAACTGAGTGGTAACTGAGGTCTG----CACCCAGCGGGAACA----GAGCGGAGCTCCCTT-----TCCCACACCCAGCAAC-------CCACGCGGGGA-----TCCTGGACGAG---------GAGGTTCAACTCCGTGGTGGAG-----CAGTGCCCGGCTCC--------------------AGTC----CTATGTGCAGATGGGCTG--------------------CAGGAG--AGAGGCTGGAGCCCGGGATTCAGGCT--------------------CCGAAGG-------------GC-CCCCCATG---GTGATCTGG-----CCCA--GAGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-T-AGTTCG--------GG-CCAT-----------------TTCTGCAGCTCACACTCCCTTTGGGA-GGTCT-------------------GGGAGAGGTGGCCCAGCACCCC-------------GCCCCGACCAGGCAGA--------CAGCAGGTCTG------------------ACGCCCTTCTGACTCAGAGAAGGCCC-TGTCTCC---AGAGCC---TCTGGGAAAGCACCCAGGCAGTGC--GAGCAGAGGC---------CACGGCTCC-CACAGAGGAGCAACAGTGGATGAAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 805941 804 - 1017659 CCCTGCAGTGAAATGGGACACAGCACCTGGTCAAGCAGCCCAGGGCCAG-------AGGCCCCTGAAACC----CTGGACCCCAGCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGC---------GAGCCCCAGGGACAGGCCCTCCCCGGTGCCAG-ATTTCCCATCTGGCCTATTTTAAACACAG-CTTCACTCTGGCCACTCCACGTGGCTG--GGCTGCTGGCAAGATCAAGCA--ATCTGCA-CCCCAAGCTCTCA--TCTC--Aggctgggacc-ccccctttcag-ttaagcaggacaactctggagctcactcaaccttcctctgcctcagtttccccatcCACAGGAACCAGGCTGCGTGACCCTCTGGCAGGCTGTAACTGAGCGGTAACTGAGGTCCG----CACCCAGCGGGAACA----GAGCGGAGCTCCCTT-----TCCCACACCCAGCAAC-------CCACGCGGGGA-----TCCTGGATGAG---------GAGGTTCAACTCCGTGGTGGAG-----CAGTGCCCGGCTCC--------------------AGTC----CTATGCGCAGATGGGCAA--------------------AAGGAG--AGAGGCTGGAGCTCCGGATTCAGGCT--------------------CCGAAGG-------------GC-CCCCCATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-T-AGTTCG--------GG-CCAT-----------------TTCTGCAGCTCACACTCCCTTTGGGA-GGTCT-------------------GGGAGAGGTGGCCCAGCACCCC-------------GCCCCGACCAGGCAGA--------GAGCAGGTCTG------------------ACGCCCTTCTGACTCAGAGAAGGCCC-TGTCTCC---AGAGCC---TCTGGGAAAGCACCCAGGCAGTGC--GAGCAGAGGC---------CACGGATCC-CACAGAGGAGCAACAGTGGAGGAAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109296578 805 - 110113093 CCCTGCAGTGAAATGGGACACAGCACCTGGTCAAGCAGCCCAGGGCCAC-------AGGCCCCTGAAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGGT---GGCACAGC---------AAGCCCCAGGGACAGGCCCTTCCCAGTACCAG-ATTTCCCATCTAGCCTATTTTAAACACAG-CTTCACCCAGGCCACTCCACGTGGCTG--GGCTGCT-GCAAGATCAAGCA--ATCTGAACCCCCAAGCTCTCA--TCTC--Aggctgggacc-ccccctttcag-ttaagcaggacaactctggagctcactcaaccttcctctgcctcagtttccccatccacaggaacgaggctgcgtgaccctctggcaggctgtaactgagcagtaactgagGCCCG----CACCCAGGGGAAACA----GAGCGGGGCTCCCTT-----TCCCACACCCAGCAAC-------CCACGCGGGGA-----TCCTGGACGAG---------GAGATTCGACTCCATGGTGGAG-----CAGTGCCCGGCTCC--------------------GGTC----CTGCGCGCAGATGGGCAG--------------------CAGAAG--AGAGGCTGGAGCCCAGGATTCAGGCT--------------------CCAAAGG-------------GC-CCCCCATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-TGAGTTCG--------GG-CCAC-----------------TTCTGCAGCTCACACTCCCTTTGGGA-GATCT-------------------GGGAGAGGTGGGCCAGCACCCC-------------GCCCCCACCAGGCAGA--------GAGCAGGTCTG------------------ACGCCCTTCTGACTCAGAGAAGGCCC-TGCCTCC---AGAGCC---TCTGGGAAAGCACCCAAGCCGTGC--GAGCAGAGGC---------CGCGGCTCC-GACAGAGGAGCAACGGTGGAGAAAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92013641 772 - 92844088 CTCTGCAGTGAGATGGGAGACAGCACCTGGTCAAGCAGCCCAGGGCCAT-------AGGCCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGT---------GAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-AGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACATGGCTG--GGCTGCTGGCAAGCTCAAGCA--ATCTGCACCCTC-AGCTCTCA--TCTC--Aggctgggacc-cctcctttcag-ttaagcaggatgactctggagcctactcaaccgtcctctgcctcagtttccccatccacagggacggggCTGTGTGACCCTCTAGTAGGCT-----------GTAACTGAGGCCCA----CACCCAGTGAGAACA----GAGTGGA----------------CACGCCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCATGGTGCAG-----CCGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGAGGCTGGAGCTGGGGATTCAGGCT--------------------CCAAAGG-------------GCACCCCTATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTACGGCAG-----------------------------------------CCCCA--GGCACATCATCTGC-TGAGTTTG--------GG-CCAT-----------------TTCTGCAGCTCACACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGGCACGCC-------------GCCCCCACCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGGG-AGGCCC-TGTCTCC---GGAACC---TCTGGGAACGCA-CCAGGCAGCGCGAGAGCGGAGGC---------CGCAGCTCCACACAGAGGAGCAACGGTGGAGAAAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95662897 772 + 96509753 CTCTGCAGTGAGATGGGAGACAGCACCTGGTCAAGCAGCCCAGGGCCAT-------AGGCCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGT---------GAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-AGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACGTGGCTG--GGCTGCTGGCAAGCTCAAGCA--ATCTGCACCCTC-AGCTCTCA--TCTC--Aggctgggacc-cctcctttcag-ttaagcaggatgactctggagctcactcaaccttcctctgcctcagtttccccatccacagggacggggCTGTGTGACCCTCTAGTAGGCT-----------GTAACTGAGGCCCA----CACCCAGTGAGAACA----GAGTGGA----------------CACGCCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCATGGTGCAG-----CAGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGAGGCTGGAGCTGGGGATTCAGGCT--------------------CCAAAGG-------------GCACCCCTATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTACGGCAG-----------------------------------------CCCCA--GGCACATCATCTGC-TGAGTTTG--------GG-CCAT-----------------TTCCGCAGCTCACACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGGCACACC-------------GCCCCCACCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGGG-AGGCCC-TGTCTCC---GGAACC---TCTGGGAACGCA-CCAGGCAGCGCGAGAGCGGAGGC---------CGCAGCTCCACACAGAGGAGCAACGGTGGAGAAAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16113779 769 - 16982598 CTCTGCAGTGAGATGGGAGACAGCACCTGGTCAAGCAGCCCAGGGCCAT-------AGGCCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGT---------GAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-CGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACGTGGCTG--GGCTGCTGGCAAGCTCAAGCA--ATCTGCACCCTC-AGCTCTCA--TCTC--Aggctgggacc-cctcctttcag-ttaagcagggtgactctggagctcactcaaccgtcctctgcctcagtttccccatccacagggacagggctgagtgaccctctAGTAGGCT-----------GTAACTGAGGCCCA----CACCCAGTGAGAAC------AGTGGA----------------CACGCCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCATGGAGCAG------AGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGAGGCTGGAGCTGGGGATTCAGGCT--------------------CCAAAGG-------------GCACCCCTATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTACGGCAG-----------------------------------------CCCCA--GGCACATCATCTGC-TGAGTTTG--------GG-CCAT-----------------TTCTACAGCTCACACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGGCACGCC-------------GCCCCCACCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGAG-AGGCCC-TGTCTCC---GGAACC---TCTGGGAACGCA-CCAGGCAGCGCGAGAGCGGAGGC---------CGCAGCTCCACACGGAGGAGCAACGGTGGAGAAAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2961775 772 - 3785965 CTCTGCAGTGAAATGGGAGACAGCACCTGGTCAAGCAGCCCAGGGTCAT-------AGGTCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGT---------GAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-AGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACGTGGCTG--GGCTGCTGGTAAGCTCAAGCA--ATCTGCACCCCC-AGCTCTCA--TCTC--AGGCTGGGACC-CCTCCTTTCAG-TGAAgcaggacgactctggagctcactcaaccttcctctgcctcagtttccccatccacagggacggggCTGTGTGACCCTCTAGTAGGCT-----------ATAACTGAGGCCCA----CACCCAGTGAGAACA----GAGTGGA----------------CACGCCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCGTGGTGCAG-----CAGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGAGGCTGGAGCTGGGAATTCAGGCT--------------------CCAAAGG-------------GCACCCCTATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTACGGCAG-----------------------------------------CCCCA--GGTACATCATCTGC-TGAGTCTG--------GG-CCAC-----------------TTCTGCAGCTCACACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGGCACGCC-------------GCCCCCATCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGGG-AGGCCC-TGTCTCC---AGAAAC---TCTGGGAACGCA-CCAGGCAGCGCCAGAGCGGAGGC---------CGCAGCTCCACACAGAGGAGCAACGGTGGAGAAAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89629522 724 - 90373283 ----------------------------------------------CAT-------AGGCCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GCCACAGC---------GAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-AGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACATGGCTG--GGCTGTTGGCAAGCTCAAGCA--ATCTGCACCCCC-AGCTCTCA--TCTC--AGGCTGGGACC-CCTCCCTTCAG-TTAAgcaggacgactctggagctcactcaaccttcctctgcctcagtttccccatcCACAGGGACAGGGCTGTGTGACCCTCTAGTAGGCT-----------GTAACTGAGGCCCA----CACCCAGTGGGAACA----GAGTGGA----------------CACGCCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCATGGTGCAG-----CAGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGAGGCTGGAGCTGGGGATTCAGGCT--------------------CTGAAGG-------------GCACCCCTATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTACGGCAG-----------------------------------------CCCCA--GGCACATCATCTGC-TGAGTTTG--------GG-CCAC-----------------TTTTGCAGCTCATACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGTCACGCC-------------GCCCCCACCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGGG-AGGCCC-TGTCTCT---GGAACC---TCTGGGAACGCA-CCAGGCAGCGC--GAGCGGAGGC---------CGCAGCTCCACACAGAGGAGCAACGGTGGAGAAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5518999 772 + 6149316 CTCTGCAGTGAAATGGGAGACAGCACCTGGTCAAGCAGCCCAGGGCCAT-------AGGCCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGC---------GAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-AGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACGTGGCTG--GGCTGCTGGCAAGCTCAAGCA--ATCTGCACCCCC-AGCTCTCA--TCTC--Aggctgggacc-cctcctttcac-ttaagcaggacgactctggagctcactcaaccttcctctgcctcagtttccccatccacagggacggggCTGTGTGACCCTCTAGTAGGCT-----------GTAACTGAGGCCCA----CACCCAGTGAGAACA----GAGTGGA----------------CACGCCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCGTGGTGCAG-----CAGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGAGGCTGGAGCTGGGGATTCAGGCT--------------------CCGAAGG-------------GCACCCCTATG---GTGCTCTGG-----CCCA--GAGTCC-------CCTACGGCAG-----------------------------------------CCCCA--GGTACATCATCTGC-TGAGTCTG--------GG-CCAC-----------------TTCTGCAGCTCACACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGGCACGCT-------------GCCCCCATCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGGG-AGGCCC-TGTCTCC---AGAACC---TCTGGGAACGCA-CCAGGCAGCGCGAGAGCGGAGGC---------CGCAGCTCCACACAGAGGAGCAACGGTGGAGAAAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4740511 775 - 5823884 CTCTGCAGTGAAATGGGAGATAGCACCTGGTCAAGCAGCCCAGGGCCAT-------AGGCCCCTGCAACC----CTGGACCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAT---GGCACAGC---------AAGCCCCACGGACAGGCCCTCCCTGGTGCCAG-AGTTCCCATCTGGCCTATTTTAAACACAG-CTTCACCCTGGCCATTCAACGTGGCTG--GGCTGCTGGCAAGCTCAAGCAATATCTGCACCC-C-AGCTCTct--tctc--aggctgggacc-cctcctttcag-ttaagcaggacgactctggagctcattcaaccttcctctgcctcactttccccatccacagggacggggCTGTGTGACCCTCTGGCAGGCT-----------GTAACTGAGGCCCACACCCACCCAGTGGGAACA----GAGTGGA----------------CACGTCCAGTGAC-------CCACGTGGGGA-----TCCTGGACGAG---------GAGATTCAAGTCCGTGGTGCAG-----CAGTGCCTGGCTCC--------------------A-TC----CTGTGCACAGATGGGCAG--------------------CAGGAG--AGATGCTGGAGCCGGGGATTCAGGCT--------------------CCGAAGG-------------GCACCCCCATG---GTGCTCTGG-----CCCA--GAATCC-------CCCACGGCAG-----------------------------------------CCCCA--GGCACATCATCTGC-TGAGTTTG--------GG-CCAC-----------------TTCTGCAGCTCACACTCCCTTTGGGAGGGTCT-------------------GGGAGAGGTGGGCCGGCACGCC-------------GCCCCCACCAGGCAGA--------GAGCAGGTCTG-----------------------------ACTCAGGG-AGGCCC-TGTCTCC---GGAATC---TCTGGGAACGCA-CCAGGCAGCGC--GAGCGGAGAC---------CGCAGCTCCACACGGAGGAGCAACGGTGGAGAAAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57453316 809 + 159171411 CCCTGCAGTGAAATGAGAGACAGCGTCTGTCCAAGCAGCCCAGGGCCAC-------AGGCCCCTGAAACC----CGGGATCCCATCT--------------GAGGCCT--------GGCCCGAA-AGCCAAGAT---GGCAGAGC---------AAGCCTCATGGATAGGC---CTTCGTTGTCAG-AGTGCCCATCTGGCCTATTCCAAACACAC-TTTCACCCTGGCCACTCAACATGGCTT--GGCTGCTGTCAAGATCAAGCA--ATCTCCACCCTCAAgctctca--tctc--a-gctgggactgccccttttcag-ttaagcaggacgactctggagcttcctcaaccttcctcagcctcagtttccccatccatagagatggggctgTATGACCCTCTGGTGGGCTCGAACTGAGCAGTCACTGAGGCTGG----CACCCAGTGGGAGTG----GAGCGGAGCTCCGTT-----TCGCACTCCCAGCGTC-------CCACGCGGAGA-----GCCTGGACAAG---------GAGATTCAACTCTGTGATGGAG-----CAGTCCCCAGGGCC--------------------AGTCCCAGCTGTGAGCAGTTGGGCAG--------------------CAGGAGAGAGAGGCTTGAGCCCAGGGCTCAGGCT--------------------CTGAAGG-------------G--CCCCCACG---GAGCTCCGG-----CCCA--GGGTCC-------CCTGAGGCAG-----------------------------------------CCCCAGGGACACATCATCTGC-TGTGTCTG--------GG-CCGC-----------------TTCTGCTGGTCACACTCCCTTTAGGAGGGCCT-------------------GGGAGAGCTGGGCCGGCACCC---------------ACCCCACCAGGCAGA--------GAGCAGGTCCT----------------AGACACCCTTCTGATTCAGGG-AAGCCC-TGTCTCC---AGAGCC---TCTGGGAAAGCTCCCAGGCAACGT--GAGCAGAGGC---------CACAGCTCCCCACAGAGGAGCCCTGGCGGAGAAAG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15571510 792 + 16356641 CCCTGCAGTGAAATGAGAGA---------------CAGCCCAGGGCCAC-------AGGCCCCTGACACC----C-GGATCCCATCT--------------GAGGCCT--------GGCCCAAA-AGCCAAGAC---AGCAGAGC---------CAGCCCCACAGACAGGC---CTCCGGTGTCAG-AGTGCCCATCCAGCCTCTTCCCAACACAC-TTTCACCCTGGCCACTCAACGTGGCTT--GGCTGCTGTCAAGATCAAGCA--GTCTCCACCCCCAAGCTCTCA--TCTC--A-GCCGGGACCGCCCCCTTTCAG-TTACGCAGGACGACTCTGGAGCTTCCTCCAGCTTCCGCAGCCTCTGTTTCCCCATCCATAGAGATGGGGCCGCATGACCCTCTGGCGGGCTCGAGTTGAGCAGTCACTGAGGCCGG----CAGCCAGCGGGAGCG----GAGCGGAGCCCCCTT-----TCGCACGCCCAGCGAC-------CCATGCGGAGA-----GCCTGGACAAG---------GAGTTTCAACTCCGTGATGCAG-----CAGTGCCC-GGGCC--------------------CGTCCCAGCTGTGAGCAGTTGGGCAG--------------------CAGGAGAGAGAGGCTTGAGCCCGGGGCTCAGGCT--------------------CTGAAGG-------------G--CCCCCACG---GAGCTCCAG-----CCCA--GGGTCC-------CCCGCGGCAG-----------------------------------------CCCCGGGGGCATGTCATCTGC-TGCATCTG--------GG-CGGC-----------------TTCTGCCGGTCACACTCCATTTGGGAGTGCCT-------------------GGGAGAGCCGGGCCGGCATCC---------------ACCCCACCAGGCGGA--------GAGCAGGTCTT----------------GGATGCCCTTCTGGCTCAGGG-AAGCCC-CGTCTCC---AGAGCC---TCTGGGAAAGCTCCCAGGCAGCGT--GAGCAGAGGT---------CACAGCTCCCCACAGAGGAGCCTCGGTGGAGAAAG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 420755 807 + 1231380 CCCTGCAGTGAAATGAGAGACAGCAACTGTCCAAGTAGCCCAGGGCCAC-------AGGCCCCTGACACC----C-AGATCCCATCT--------------GAGGCCT--------GGTCCGAG-AGCCAAGAC---AGCAGAGC---------AAGCCCCACGGACAGG----CTCCGGGGTCAG-AGGGCCCCTCCGGCCTATTCCAAACACAC-TTTCACCCTGGCCACGCAACGTGGCTT--GGCTGCTGGCAAGATCAAGCA--ATCTCCACCCCCAAGCTCTCC--TCTC--A-GCCGGGACCGCCccctctcag-ttaagcaggacgactctggagcttcctcaaccttctgcagcctcggtttccccaaccatagagatggggCTGCGTGACCCTCTGGCGGGCTCGACCTGAGCAGTCACTGAGGCCGG----CACCCAGCAGGAGTG----GAGCGGAGCTCCCTT-----TCGCACGCCCAGCGAC-------CCATGCGGAGA-----GCCTGGACAAG---------CAGATTCAACTCCGTGATGGAG-----CAGTGCCTGGGGCC--------------------GGTCCCGGCTGTGAGCAGCTGGGCAG--------------------CAGGAGATAGAGGCTTGAGCCCGGGGCTCAGGCT--------------------CTGAAGG-------------G--ACCCCACG---GAGCTCCGG-----CCCA--GGGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-TGAGTCTG--------GG-CCTC-----------------TTCTGCCAGTCACACTCCATTTGGGAGTGCCT-------------------GGGAGAGCTGGGCCAGCACCC---------------ACCCCACCAGGCGGA--------GAGCAGGTCCT----------------AGATGCCCTTCTGGCTCAGGG-AAGCCC-TGTCTCC---AGAGCC---TCTAGGAAAGCTCCCAGGCAGCAT--GAGCAGAGGC---------CACAGCTCCGCACAGAGGAGCCGAGGTGGAGAAAG i cebCap1.NW_016107870v1 I 22 C 0 s aotNan1.NW_018500483v1 1978014 806 + 11732439 CCCTGCAGTGAAATGAGAGACAGTATCTGTCCAAGCAGCCCAGGGCCAC-------AGGCCCCCAAAACC----CGGGATCCCATCT--------------GAGGCCT--------GGCCCGAA-AGCCAAGAC---GGCAGAGC---------GAACCCCACGGACAGGC---CTCCGGTGCCAG-AGTGCCCATCCGGCCTATTCCAAACACAC-TTTCACCCTGGCCACTCAACGTGGCTT--GGCTGCTGTCAAGTTTAAGCA--ATCTCCACCcccaagctctca--tctc--a-gctgggaccgccccctttcag-ttaagcag---gactctggagcttcctcaaccttcctcagcctcagtttccccatccataaagatggggCTGCGTGACCCTCTGGTGGGCTCGAACTGAGCAGTCACTGAGGCTGG----CACCCAGCGGGAGTG----GAGCAGAGCTCCCTT-----TCGCACGCCCAGCAAC-------CCATGCGGAGA-----GCCTGGACAAG---------GAGATTCAACTCCGTGATGGAG-----CAGTGCCCGGGGCA--------------------GGTCCCGGCTGTGAGCAGCTGGGCAG--------------------CAGGAGAGAGAGGCTTGAGCCTGGGGCTCAGGCT--------------------CTGAAGG-------------G--CCCCCATG---GAGCTCCGG-----CCCA--GGGTCC-------CCTGCGGCAG-----------------------------------------CCCCAGGGGCACATCATCTGC-TGAGTCTG--------GG-CCAC-----------------TTCTGCCGGTCACAATCCCTTTGGGAGGGCCT-------------------GGAAGAGCTGGGCCGGCACCC---------------AACCCACCAGGTGGA--------GAGCAGGTCCT----------------AGACGCCCTTCTGGCTCAGGG-AAGCCC-TGTCTCC---AGAGCT---TCTGGGGAAGCTCCCAGGCAGTGT--GAGCAGAGGC---------CACAGCTCCCCACAGAGGAGCCGCGGTGGAGAAAG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22189793 726 + 22939663 CACTGCTAAGAAATGA-----------------------------CCAC-------AGGCCCCTGGAGCC----TCAGAGGCC-TCT--------------AAGGTC-----------ACTGCA-CACCAGGAC---AGGACACCATCTGAGCAGAGTCCAGCAGTCAC-----TCCTGACACCAG-ATTCTCCCTCTGGCCTGTTGTAAGTTCAATTTTTATCCTGGCCACTCCAAATGGACA--ATGTACTTGGCAGATTAAGCA------GCACCCCA-AGCCCTCA--CCTCTGAGGCTGGGACT-CTCC---TCAG-T-GTGCAGGACAACTCCAGGATTCAC---ACCTTTGTCAGCCTCCATTTCCCCATCAGTAA---------------ATCCCCTA--CAGCTCATAGTGAGAAATAACTGGGGCCTG----CA--CAGCAGGAGGGT---GAGTGTGGTCCCATC-----TCCTGCTCCTAA---------------GTGGGGA-----CTAT--------------------TTCCA---CGTGGAGTAA-----C--TGCCCAGCTCT--------------------CATC----CTGTGCACAA------GG--------------------AAAGAA--TGACGCTGGGGTCT--GATTCAGGCT--------------------CTAAGAG-------------GA-CCCCCACA---GTGCTGGGACACCCCCCAACAAGCTC-------CCCAGGGCAG-----------------------------------------CCCCATGGAGATA-CATATGC-CCAATTTG--------GGACCTT-----------------TTCTGTGGCTCATAGCCCCTTTGCAGAGGATG-------------------GTAGGAGGAGG----GTGCCCC-------------TCTCCCTGTAGCCAAA--------G-GCAGGTCTC-----------------TGACCCCTTCAGACTCAGGGAAGGCCCATGTCTCCAGAAGAGCT---TCTGGGAAAGCT-CAGAGAGAAGT--AAGCAATGGC---------TATGGCTAGGCATAGAGGCTAATCAGTGGAGAAAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181131664 634 + 182113224 TTTTTCTGTGAAATGGGAGGTGACACCTGGCTTGACAGCCTATGGCAATGGTTCTGGGGCTCCTAAGGTCTCAACAGGAACACCTGTACATTGTGGACAGAGGGGCCTTGGTGATCGGCACAAAGAGCTGAGCTATGGGTAAACC-------CAGAACCCAAAGTACAGCC---CCCCATGACTTG-GTTTCCCATTTAG-TTCTTTCAAATGCCA-TGCCTTCCTAGATGTCCAC--TGGCCT--GGATGTTGAAGAGAACAAGCT--GTCCACACTCTC-AGCTTTCAGCTCTC--AGGCAGG-----CCGCCTCCCAGCTTATACAGGAAGACC------------------TTTTCAGCCTCAGCTTCCCCATC-----------------ATGCTCCTCTGG----------------------------CCA----CAGGCAGTAAGTCTA----GCATGTG--------------------------------------ATAGGGGCA-----TCATAACCCAG---------CAACCTC-----------------------TCCCTAAGTCC----------------------------CTG-------------------------------------------AGCTACTTGGAGCTCTCACTCA-GCT--------------------CTCGAGC-------------ACATCATGATGAACATGAACATG-----CTCT--AAGGCC-------CCCATAATAC-----------------------------------------TCCCA---------CCTCTGC-CTAGATTT--------G--TCTT-----------------CGCTGTGGTTCAC---CCTTTTCGG--------------------------GGCAGAGGGGACTGGGTA---------------------------------------------------------------------------------GTTCAAAT--GGCTC-TGCCTGG---GTGACC---TT-----------CCAGGTTGAGT----GCAGAGATATTTCTGAAAACGTCTCT-CACA-------AGCAGTCCATAAAG i mm10.chr2 I 1 I 28 s canFam3.chr24 47098230 927 + 47698779 --------------------------------------------------------------------------GCAGATGCCGCCT--------------GCGGACA--------GA---GGG-GGCT--GCT---GGCCCAGC-----------CTCACACGCCCGGGCCCACGCTGTCACCGGCACGTGCCACCCGGCCTATTTTAAA--CAG----------------TCCGAGTGGCTTCCAGATGTGGGGAAGGTC-AGCG--ATCTGCACCTGAAAACCCTCA--TCTCCAAGGCAGAGACG----CCTTTCAGCTTAAGTGGGACAACTCTGGAGCTCA-TCAGCCTTGCTTGGCCTCAGTTTCCCCA-CCGTGAGAACAGGCCTCTCTGAGGCTCCTGGAGGT------------ACACCTGAGGCCTG----CACACAGTAGGCACCTCACACGTGCAGCTCCCCTTCCACTCCCACCTTCAGCCACAGAGAAACCACGTGGAAAGTTCCCCCTCGAAGGACTACCTGCTGGGCTCCCAGTGAGCGTGGGGGTCACACCGCACCCAGGTCCCCAAGGGATCCCCCGTGGACCGGC----CTG-GAGCAGGTGAGCGGCCCCGCAGGCCCCACCTGCCCAGACG--CACGCCCCTGACCGGAGGTCCAGGCTTTTCTGCGGCTCGCATCCCCCTGGAGAAACTCCAGGCCCCGCACCCAGGAG---GTCCCCGCA-----CACA--GAGGCCCGCCAAGCCCGGGGCAGGAGGGGCCGGCAGCGGAGGAGCGTCTGCGGGGTGCCCCTGCCCCCCACGGCCCAGTCTGTGCGTGAGTCTGTCTTCCCAGG-CcctgctctcctgctctcctgctctcctgctctccgtccctctgcgtccctctgcgtccGGCCACAGGCAGAGGAAGGGACGGCCCAGCGGCCTCCGAGCTGGGAGGGCCGGACCCAGGCTGGCTCTGGCCGGGCAGGCCCACAGCTCGGGCGGCCGCGGGCTCCCTCCTGACTCAGGGCAGCTCC-TGGCTCC---GGAAGCACGTCTGGCAAAGCTCCC-------GC-----TGGTGGC---------CGTGGCCCCGCTCCCAGGGG--------------- i canFam3.chr24 C 0 C 0 a score=504335.000000 s hg38.chr20_KI270871v1_alt 56987 76 + 58661 TCCCTCTCTAACTCAGTGCTGGACGTCCCCACCTCCCCAGAGCGGGGGCAGC--AGGGGCCTGGCCTGACGCCCACCA s panTro5.chr20 65633133 76 + 66533130 TCCCTCTCTAACTCAGTGCTGGACGTCCCCACCTCCCCAGAGCGGGGGCAGC--AGGGGCCTGGCCTGACGCCCACCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61392349 76 + 62195757 TCCCTCTCTAACTCAGTGCTGGACGTCCCCACCTCCCCAGAGCGGGGGCAGC--AGGGGCCTGGCCTGACGCCCACCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 806745 76 - 1017659 TCCCTCTCTAACTCAGTGCTGGACGTCCCCACCTCCCCAGAGCGGGGGCAGC--AGGGGCCTGGCCTGACGCCCACCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109297383 76 - 110113093 CCCCTCTCTAACTCAGTGCTGGACGTCCCCACCTCCCCAGGAAGGGGGCAGC--AGGGGCCTGGCCTGACACCCACCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92014413 75 - 92844088 CCCCTCTCTAACTCGGTGCT-GACGTCTCCGCCTCCCCAGGGCCGGGGCAGC--GGGGGCCTGGCCTGATGCCTACCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95663669 75 + 96509753 CCCCTCTCTAACTCGGTGCT-GACGTCTCCGCCTCCCCAGGGCCGGGGCAGC--GGGGGCCTGGCCTGATGCCTACCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16114548 75 - 16982598 CCCCTCTCTAACTCGGTGCT-GACGTCTCCGCCTCCCCAGGGCCGGGGCAGC--GGGGGCCTGGCCTGATGCCTACCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2962547 75 - 3785965 CCCCTCTCTAACCCGGTGCT-GACGTCTCCAACTCCCCAGAGCTGGGGCAGC--GGGGGCCTGGCCTGATGCCTACGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89630246 75 - 90373283 CCCCTCTCTAACTCGGTGCT-GACGTCTCCACCTCCCCAGAGCCGGGGCAGC--GGGGGCCTGGCCTGATGCCTACCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5519771 75 + 6149316 TCCCTCTCTAACCCGGTGCT-GACGTCTCCACCTCCCCAGAGCTGGGGCAGC--GGGGGCCTGGCCTGATGCCTACGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4741286 75 - 5823884 CCCCTCTCTAACTCAGTGCT-GACGTCTCCACCTCCCCAGAGCCGGGGCAGC--AGGGGCCTGGCCTGATGCTTACCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454125 46 + 159171411 CCCCTCCCCAGCTCA-----------------------------GGGGCAGT---GCGGCCTGGCCTGAAGTCCACCA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15572302 46 + 16356641 CCTCTCCCCAGTCCG-----------------------------GGGGCAGC---GGGGCCTGGCCTGATGCCCACCA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 421562 46 + 1231380 CCCCTCCCCAGCTCC-----------------------------GGGGCAGC---GGGGCCTGGCCTGACGCCCACCA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1978820 46 + 11732439 CCCCTCCCCAGCTCG-----------------------------GGGGCAGC---GGGGCCTGGCCTGACGCCCACCA i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22190519 50 + 22939663 TCCCTC----------------------------CCACAGAGCAGAGGCCACCAGTGGGCCTGGTCTGATGCCCACCA i otoGar3.GL873542 C 0 C 0 s canFam3.chr24 47099157 56 + 47698779 --CCTGTCT---TCAGAGAGAGCCCCCTCCAC------------AGGGTAGA--CGGGAAGCGGCCCCGCCCCCA--- i canFam3.chr24 C 0 C 0 e mm10.chr2 181132298 28 + 182113224 I a score=2473115.000000 s hg38.chr20_KI270871v1_alt 57063 269 + 58661 AGCCCTGGGGCCATGGGGCAGCAGCCACCGCCCTCTCTAC----CCCAGAC----AGTGGCTACCCC--GG-GTCCAACAGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCCGAAGCCAGACACTGGTGGCAATAGGCAAAAGGCAGGTGGG--CCTG--GGGACCTGTATTCAGCC------------------ACAGCTGGGTGCGGCAGCACAAGGAG-CCCTGGCCTTCCCCCCA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTGAGCTCCGTCTCCGTTTAGCTGATGAACAAACAGA s panTro5.chr20 65633209 269 + 66533130 AGCCCTGGGGCCATGGGGCAGCAGCCACCGCCCTCTCTAC----CCCAGAC----AGTGGCCACCCC--GG-GTCCAACAGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCCGAAGCCAGACACTGGTGGCAATAGGCAAAAGGCAGGTGGG--CCTG--GGGACCTGTATTCAGCC------------------ACAGCTGGGTGCGGCAGCACAAGGAG-CCCTGGCCTTCCCCCCA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTGAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61392425 269 + 62195757 AGCCCTGGGGCCATGGGGCAGCAGCCACCGCCCTCTCTAC----CCCAGAC----AGTGGCCACCCC--GG-GTCCAACAGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCCGAAGCCAGACACTGGTGGCAATAGGCAAAAGGCAGGTGGG--CCTG--GGGACCTGTATTCAGCC------------------ACAGCTGGGTGCGGCAGCACAAGGAG-CCCTGGCCTTCCCCCCA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTGAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 806821 269 - 1017659 AGCCCT-GGGCCATGGGGCAGCAGCCACCGCCCTCTCTAC----CCCAGAC----AGTGGCCACCCC--GG-GTCCAACAGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCCGAAGCCAGACACTGGTGGCAATAGGCAAAAGGCAGGTGGG--CCTG--GGGACCTGTATTCAGCC------------------ACAGCTGGGTGCGGCAGCACAAGGAGCCCCTGGCCTTCCCCCCA-----CTCCCGGCTGCCC-CAGGCCC----------------AGCTGAGCTCCATCTCCGTTTAGCTGATGAACAAATAGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109297459 190 - 110113093 AGCCCTGGGGCCATGGGGCAGCAGCCACTGCCCTCTCTAC----CC----C----AGTGGCCACCCC--GG-GTCCAACAGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCCGAAGCCAGACGCTGGTGGCAACAGGCAGAAGGCAGGTGGG--CCTG--GAGACCTGTGTCCAGCC------------------ACAGCTGGGTGCGGCAGCGCAAGGAG--------------------------------------------------------------------------------------------------A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92014488 263 - 92844088 AGCCCTGGGGCCATAGGGCAGCA------GCCCTCTCTAC----CCCAGAC----AGCGGCCACCCC--GG-GTCCAGCGGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCTGAAGCCAGACGCTGGGGGCAACAGGCAAAAGGGAGGTGGG--CCTG--GGGACCTATGTCCAGCC------------------ACAGCTGGGTGCGGCAGCACAGGGAG-CCCTGGCCTTCCCCCTA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95663744 263 + 96509753 AGCCCTGGGGCCATAGGGCAGCA------GCCCTCTCTAC----CCCAGAC----AGCGGCCACCCC--GG-GTCCAGCGGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCTGAAGCCAGACGCTGGGGGCAACAGGCAAAAGGGAGGTGGG--CCTG--GGGACCTGTGTCCAGCC------------------ACAGCTGGGTGCGGCAGCACAGGGAG-CCCTGGCCTTCCCCCTA-----CTCCTGGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16114623 263 - 16982598 AGCCCTGGGGCCATAGGGCAGCA------GCCCTCTCTAT----CCCAGAC----AGCGGCCACCCC--GG-GTCCAGCGGGGATGCCCAGAGAGGTTCTCACAACTTGACCTCTCTGAAGCCAGACGCTGGGGGCAACAGGCAAAAGGGAGGTGGG--CCCG--GGGACCTGTGTCCAGCC------------------ACAGCTGGGTGCGGCAGCACAGGGAG-CCCTGGCCTTCCCCCTA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2962622 263 - 3785965 AGCCCTGGGGCCATAGGGCAGCA------GCCCTCTCTAC----CCCAGAC----AGCGGCCACCCT--GG-GTCCAGCAGGGATGCCCAGAGAGGTTCTCACAACTGGACCTCTCTGAAGCCAGACGCTGGGGGCAACAGGCAAAAGGGAGGTGGG--CCTG--GGGACCTGTGTCCAGCC------------------ACAGCTGGGTGCAGCAGCACAGGGAG-CCCTGGCCTTCCCCCTA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89630321 263 - 90373283 AGCCCTGGGGCCATAGGGCAGCA------GGCCTCTCTAC----CCCAGAC----AGTGGCCACCCT--GG-GTCCAGCAGGGATGCCCAGAGAGGTTCTCACAGCTTGACCTCTCTGAAGCCAGACGCTGGGGGCAACAGGCAAAAGGGAGGTGGG--CCTG--GGGACCTGTGTCCAGCC------------------ACAGCTGGGTGCAGCAGCACAGGGAG-CCCTGGCCTTCCCCCTA-----TTCCCGGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAGCAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5519846 263 + 6149316 AGCCCTGGGGCCATAGGGCAGCA------GCCCTCTCTAC----CCCAGAC----AGCGGCCACCCC--GG-GTCCAGCAGGGATGCCCAGAGAGGTTCTCACAACGTGACCTCTCTGAAGCCAGACGCTGGGGGCAACAGGCAAAAGGGAGGTGGG--CCTG--GGGACCTGTGTCCAGCC------------------ACAGCTGGGTGCAGCAGCACAGGGAG-CCCTGGCCTTCCCCCTA-----CTCCCGGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4741361 269 - 5823884 AGCCCTGGGGCCATAGGGCAGCAGCCACCGCCCTCTCTAC----TCCAGAC----AGTGGCCACCCC--GG-GTCCAGCAGGGCTGCCCAGAGAGGTTCTCACAACTTGACCTCTCCGAAGCCAGACGCTGGTGGCAACAGGCAAAAGGGAGGTGGG--CCTG--GGGACCTGTGTCCAGCC------------------ACAGCTGGGTGCGGCAGCACAGGGAG-CCCTGGCCTTCCCCCCA-----CTCCCAGCTGCCC-CAGGCCC----------------AACTCAGCTCCATCTCCGTTTAGCTGATGAACAAACAGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454171 252 + 159171411 AGCCCTGGGGTCATGGGGCAGCAGCTACCGCCCTCTCCAC----CCCAGGC----AGTGGCCACCCC--AG-GTCCAGCAGGGTTGGCCAGAAAGGCTCTCAAAACTTGACCTCTA-----CCAGACACTGGTGGCAAGAAGCAAAAGGCAGGTGTGGCCCTG--GGGACCCATGTCCAGCC------------------AAAGCTGAGTG-AGCAGC-CAG-------------CGTCCCCCA-----CCCCTGGCTGCCC-CAGGCCC----------------AACTCAGCTCAATACCCATTTAACTGATGAATAAACAGA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15572348 267 + 16356641 AGCCCTGGGGTCATGGGGCAGCAGCCA-CGCCCTCTCCAC----CCCAGGC----AGTGGCCACCCC--AG-GTCCAGCAGGGACGCCCAGAAAGGCTTTCACAACTTGACCTCTACAAAGCCAGGCACTGGTGACAAAAGGCAAAAGGCAGGTGTGGCCCTG--GGGACCTGTGTCCAGCC------------------AAAGCTGAGTG-AGCAGC-CAGGGAG-CCCAG--CCATCCCCCA-----CCCCCCATCCCCCGCCACCCC----------------AACTCAGCTCCATATCCATTTAACTGATGAATAAACAGA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 421608 267 + 1231380 AGCCCTGGGGTCATGGGGCAGCAGCCACCGCCCTCTCCAC----CCCAGGC----AGTGGCCACCCC--GA-GTCCAGCAGGGATGCCCAGAAAGGCTCTCACAACTTGACCACTACAAAGCCAGACACTGGTGGCAACAGGCAAAACGCAGGTGTGGCCCTG--GGGACCTGTGTCCAGCC------------------AAAGCTGAGCG-AGCAGC-CAGGGAG-CCCGG--CCATCCCCCA-----CCCCCGGCCGCCC-CAGGCCC----------------AGCTCAGCTCCATATCCATTTAACTGATGAATAAACAGA i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1978866 267 + 11732439 AGCCCTGGGGTCATGGGGCAGCAGCCACCGCCCTCTCCAC----CCCAGGC----AGTGGCCACCCC--GG-GTCCAGCAGGGATGCCCAGAAAGGCTCTCACAACTTGACCTCTATAAAGCCAGATGCTGGTGGTAACAGGCAAAAGGCAGGTGTGGCCCTG--GGGATCTGTGTCCAGCC------------------AAAGCTGAGTG-AGCAGC-CAGGGAG-CCCAG--CCGTCCCCCA-----CCCCCGGCCGCCC-CAGGCCC----------------AACTCACCTCCATATCCATTTAACTGATGAATAAACAGA i aotNan1.NW_018500483v1 C 0 I 46 s otoGar3.GL873542 22190569 244 + 22939663 AGCCCTGGGG-CACAGGGCATGG----CCTCCCTCTCCAC----TCATGAT----GGTGGCTACCCT--GGAGGCCAGCAAGGACACTCAGCAGGGAC------ACCTGACCTCTTGGA----AGACTTTGGTGGCAACGGGCAGGAGGCAGGTGGC--CAGGAAGGGACTTTCTTCTAGCC------------------ACAGCCAAGCATAGCAGC-CAGCAAG-CCCCAGCCCCTACCC-------CTACCAACCACCC-CAG-CCC----------------ACCTCAGCACCATCTTCATGTAATTAATGA--------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181132326 251 + 182113224 AGCCCTGTGGCCATTGAGTCTGA------CCTCGCTTAACAAGGTCCAAACCAAGAGTGGTCACCTC--TG-GCC---------------AAGAGGTTGATATGTCTGGACATCTCACAGACCAGGCTTTGATGGCCAAAGGAAGAAGGAAAGTGGC--CCAG--GAAAACCCAATAC-TCC------------------TTAAATGAGAAACTCATTTCTATGGG-TCTTGGATCTGTTCTCAAGCAGCTACCTG--GCCT-CAGGAGG----------------GGCT--GTGTCATCCTTGC-TAACTAATGAACAAA---- i mm10.chr2 I 28 C 0 s canFam3.chr24 47099213 284 + 47698779 AGCCCAGGGGCCAGAGGGCAGCCA-----CCTCCCTCCAG----CCCCGAC----AGCCACTGCCCCCGGG-GTCCA-CCGGGACACCCAGACGGGCTGGCACACGGCCACCTTCCAGAAGCCAGGCTCTGGTGGCAA------------AGGTGGC--CCAG--GAGGGCCCAGCACGGCCCGGGCCCCGGGACTCTTTCCAGCCAGGAGCGCTGGT-TAACGAG-GCCTGGCCGCCCCCT-------CCTCCGGCCTCCG-CAGGCCCCAGCGCCAGGCCGGGAAGACGGGCTTGAACTTCCTTTAATTAACGAATCGACAAA i canFam3.chr24 C 0 C 0 a score=342304.000000 s hg38.chr20_KI270871v1_alt 57332 44 + 58661 CCAAATGCTGCCTAACACGCCACACGGGCCAGTCCATGCCGGGC s panTro5.chr20 65633478 44 + 66533130 CCAAATGCTGCCTAACGCGCCACACGGGCCAGTCCATGCCGGGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61392694 44 + 62195757 CCAAATGCTGCCTAACGCGCCACACGGGCCAGTCCATGCCGGGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807090 43 - 1017659 CCAAATGCTGCCTAATGCGCAACACGGG-CAGTCCATGCCGGGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109297649 44 - 110113093 CCAAATGCCGCCTAACGCACAACACGGGCCAGTCTGTGCCGGGC i nomLeu3.chr13 C 0 I 4 s rheMac8.chr10 92014751 43 - 92844088 CCAAATGATGCCTAATGCACAACCC-GGCCAGTCCATGCCGGAC i rheMac8.chr10 C 0 I 4 s macFas5.chr10 95664007 43 + 96509753 CCAAATGATGCCTAATGCACAAccc-ggccagtccatgccgggc i macFas5.chr10 C 0 I 4 s macNem1.NW_012014244v1 16114886 43 - 16982598 CCAAATGATGGCTAATGCACAAccc-ggccagtccatgccgggc i macNem1.NW_012014244v1 C 0 I 4 s cerAty1.NW_012001373v1 2962885 43 - 3785965 CCAAATGATGCCTAATGCACAACCC-GACCAGTCCATGCCGGGC i cerAty1.NW_012001373v1 C 0 I 4 s chlSab2.chr2 89630584 43 - 90373283 CCAAATGATGCCTAATACACAAccc-ggccagtccatgccgggc i chlSab2.chr2 C 0 I 4 s manLeu1.NW_012104365v1 5520109 43 + 6149316 CCAAATGATGCCTAATGCACAAccc-ggccagtccatgccgggc i manLeu1.NW_012104365v1 C 0 I 4 s colAng1.NW_012114444v1 4741630 43 - 5823884 CCAAATGATGCCTAATGCACAACCC-GGCCAGTCCATGCCGGGC i colAng1.NW_012114444v1 C 0 I 4 s calJac3.chr5 57454423 43 + 159171411 -CAAATCATGGCCAATGCGTAACACAAGCCAGTCCACACTGGGT i calJac3.chr5 C 0 I 3 s saiBol1.JH378156 15572615 43 + 16356641 -CAAATCACGGCCAATGTGTAACACAAGCCAGTCCACACCCGGC i saiBol1.JH378156 C 0 I 3 s cebCap1.NW_016107870v1 421875 43 + 1231380 -CAAATCATGGCCAACGCGTAACACAAGTCAGTCCACACCGGGC i cebCap1.NW_016107870v1 C 0 I 3 s otoGar3.GL873542 22190813 36 + 22939663 --------TGCTTATTGCATACCACGGGCTAGTCCATTACAGGT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181132577 43 + 182113224 CCAAACACTGCCTAACACACAGCGTGACCCAGTCCATGCAGAC- i mm10.chr2 C 0 C 0 s canFam3.chr24 47099497 36 + 47698779 CCAAAGGACGCGCA--------CACGGGCCAGTCCACGCTGGGC i canFam3.chr24 C 0 C 0 e aotNan1.NW_018500483v1 1979133 46 + 11732439 I a score=1872093.000000 s hg38.chr20_KI270871v1_alt 57376 253 + 58661 CAGAGG-----ACATGGG----GCCA-------------TCAGGCCTC----------------CC-------------AAGTGGAGGT-GGGGGCTGCACTCCAAGGATGGG-----CTGGGCCACGGGGACAGCAGCAAACACCACACCAGGGGTCTGGGAGC-C--GGGC---GGTGAGCTGCA---CCAGCAGTGC-TGAGCC---ACATCCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGAAGAGTG-TGATGCCCCCCAGCAG-TGGTGTTCACAAAGCCCTGG-GTTGAGAAGCAGCTGTGCCGACGTTACCGAC-GGA s panTro5.chr20 65633522 254 + 66533130 CAGAGG-----ACACGGG----GCCA-------------TCAGGCCTC----------------CC-------------AAGTGGAGGTGGGGGGCTGCACTCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGCGAACACCACACCAGGGGTCTGGGAGC-C--GGGC---GGTGAGCTGCA---GCAGCAGTGC-TGAGCC---ACGTCCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGAAGAGTG-TGATGCCCCCCAGCAG-tggtgttcacaaagccctgg-gttgagaagcagctgtgccgatgttaccgac-gga i panTro5.chr20 C 0 C 0 s panPan2.chr20 61392738 253 + 62195757 CAGAGG-----ACACGGG----GCCA-------------TCAGGCCTC----------------CC-------------AAGTGGAGGT-CGGGGCTGCACTCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGCGAACACCACACCAGGGGTCTGGGAGC-C--GGGC---GGTGAGCTGCA---GCAGCAGTGC-TGAGCC---ACGTCCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGAAGAGTG-TGATGCCCCCCAGCAG-tggtgttcacaaagccctgg-gttgagaagcagctgtgccgatgttaccgac-gga i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807133 253 - 1017659 CAGAGG-----ACACGGG----GCCA-------------CCAGGCCTC----------------CC-------------AAGTGGAGGT-GGGGGCTGCACTCCAACGATGGG-----CTGGGCCATGGGGACAGCAGCAAACACCACACCAGGGGTCTAGGGGC-C--GGGC---GGTGAGCTGCA---CCAGCAGTGC-TGAGCC---ACGTCCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGAAGAGTG-TGATGCCCCCCAGCAG-TGGTGTTCACAAAGCCCTGG-GTCGAAGAGCAGCTGTGCCGACGTTACCGAC-GGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109297697 253 - 110113093 CAGAGG-----ACACGGG----GCCA-------------TCAGGCCTC----------------CC-------------AAGTCAGGGT-GGGGGCTGCACTCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGCGAACGCCACACCAGGGGTCTGGGGGC-C--GGGC---GGTAAGCTGCA---CCAGCAGTGC-TGAGCC---ACGTCCCCTTTTACAGAGGA--CACTGGGCCGGCCTGGAAGAGTG-GGACGCCCCCCAGCAG-TGGTGTTCACAAAGCCCTAG-GTTGAGAAGCAGCTGTGCCGACGTTACCGAT-GGA i nomLeu3.chr13 I 4 C 0 s rheMac8.chr10 92014798 226 - 92844088 CAGGGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGCCGGGGT-GGAGGCTGTACCCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGAGAACTCCACAC-------CTGGGGGC-T--AGGT---GGTGAGTTGCA---------------------------CCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGCTCACAAAGCCCTTG-AGTGAGAAGCAGCTGTGCTGATGTTACCCAC-AGA i rheMac8.chr10 I 4 C 0 s macFas5.chr10 95664054 226 + 96509753 caggGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGCCGGGGT-GGAGGCTGTACCCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGAGAACTCCACAC-------CTGGGGGC-T--GGGT---GGTGAGTTGCA---------------------------CCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGCTCACAAAGCCCTTG-AGTGAGAAGCAGCTGTGCTGATGTTACCCAC-AGA i macFas5.chr10 I 4 C 0 s macNem1.NW_012014244v1 16114933 226 - 16982598 caggGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGCCGGGGT-GGAGGCTGTACCCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGAGAACTCCACAC-------CTGGGGGC-T--GGGT---GGTGAGTTGCA---------------------------CCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGCTCACAAAGCCCTTG-AGTGAGAAGCAGCTGTGCTGATGTTACCCAC-AGA i macNem1.NW_012014244v1 I 4 C 0 s cerAty1.NW_012001373v1 2962932 233 - 3785965 CGGGGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGCCGGGGT-GGAGGCTGTACCCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGAGAACTCCACGCCAGAGGTCTGGGGGC-C--AGGC---GGTGAGTTGCA---------------------------CCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGctcacaaagcccctg-agtgagaagcagctgtgccgatgttactcac-aga i cerAty1.NW_012001373v1 I 4 C 0 s chlSab2.chr2 89630631 234 - 90373283 caggGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGCCGGGGT-GGAGACTGTACCCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGAGAACTCCACACCAGAGGTCTGGGGGC-C--AGGT--GGGTGAGTTGCA---------------------------CCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGctcacaaagcccctg-agtgagaagcaactgtgccgatgttacccac-aga i chlSab2.chr2 I 4 C 0 s manLeu1.NW_012104365v1 5520156 233 + 6149316 caggGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGCCGGGGT-GGAAGCTGTACCCCAAGGATGGG-----CTGGGCCATGGGGACAGCAGAGAACTCCACGCCAGAGGTCTGGGGGC-C--AGGC---GGTGAGTTGCA---------------------------CCTCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGctcacaaagcccctg-agtgagaagcagctgtgccgatgttactcac-aga i manLeu1.NW_012104365v1 I 4 C 0 s colAng1.NW_012114444v1 4741677 233 - 5823884 CGGGGG-----ACACGGG----GCCA-------------TCGGGCCTC----------------CC-------------AAGTCGGGGT-GGAGGCTGCACCCCAAGGGTGGG-----CTGGGCCATGGGGACCGCAGAGAACTCCACACCAGGGGTCTGGGGGC-C--GGGC---GGTGAGTTGCA---------------------------CCCCTTTCACAGAGGG--CACTGGGCCGGCCTGGTAGAGTG-GGATGCCCCCCAGCAG-CGGGGctcacaaagccctcg-agtgaggagcagctgtgccgatgttacccac-aga i colAng1.NW_012114444v1 I 4 C 0 s calJac3.chr5 57454469 251 + 159171411 CAGAGG-----ACACCGA----GCCA-------------ACGGGCCTC----------------CC-------------AAGCT-GGGG-G---GCTGCACCCCAAGGATGCA-----CTGGGCCACAGGGACAGCAAAGAACTCCATGCCAGGGATGTGGGGGC-C--AGGC---AATGAGCTGCA---CCAGCAGTGC-TGAGCCTGGACTGTCCCTTCCACAGAGGG--CACCAGGCTGGCCTGGAACAGGG-GGACACCC-CCAGCAGCCGGTCTTCACAGAGCCC-AG-GGCGAGGAGCAGCTGTGCCGAAATGACTTAT-GGA i calJac3.chr5 I 3 C 0 s saiBol1.JH378156 15572661 252 + 16356641 CAGAGG-----ACACCAG----GCCA-------------ACAGGCCTC----------------CC-------------AAGTTGGGGG-G---GCTGCACCCCAAGGATACC-----CTGGGCCACAGGGACAGCAGAGAACTCCATGCCAGGGGTGTGGGGGC-C--GGGC---GGTGAGCTGCG---CCAGCAGTGC-TGAGCCTGGACTGTCCCTTCCACAGAGGG--CACCAGGCCGGCCTGGAAGAGGG-GGACAACC-CCAGCAGCCGGTCTTCACAGAGCCC-AG-AGCGAGGAGCAGCTGTGCCGATACTACGGAC-GGA i saiBol1.JH378156 I 3 C 0 s cebCap1.NW_016107870v1 421921 253 + 1231380 CAAAGG-----ACACCGG----GCCA-------------ACAGGCCTC----------------CC-------------AAGTTGGGAG-GT--GCTGCACCCCAAGGATGCA-----CTGGGCCACGGGGACAGCAGAGAACTCCATGGCAGGGGTGTGGCAGC-C--GGGC---AGTGAGCTGCA---CCGGCAGTCC-TGAGCCTGGACTGTCCCTTCCACAGAGGG--CACCGGGCGGGCCTGGAAGAGGG-GGACAACC-CCAGCAGCCGGTCTTCACAGAACCC-AG-GGCGAGGAGCAGCTGTACCCACATTACCGAC-GGA i cebCap1.NW_016107870v1 I 3 C 0 s aotNan1.NW_018500483v1 1979179 237 + 11732439 CAGAGG-----ACACCGG----GCCA-------------ACAGGCCTC----------------CC-------------AAGTTGGGGT-G---GCTGCACCCCAAGGATGCA-----CTGGGCCACAGCGACAGCAGAGAACTCCATGCCAGGGACGTGGGGGC-C--AGGC---AGTGAGCTGCA---CCAGCAGTGC-TGAGCCTGGACTGTCCCTTCCACAGAGGG--TACCGGGCCGGCCTGGAAGAGGG-GGACACCC----------------CACAGAGCCC-AG-GGCGAGAAGCAGCTGTGCCGAAATTACCGAC-GGA i aotNan1.NW_018500483v1 I 46 C 0 s otoGar3.GL873542 22190849 239 + 22939663 -----G-----AGGTGGG----ACCA-------------CGGGGTCTG----------------GCCTCAACTTCAGGAAAGTTGGAGT-GGG-GCTGGGCCCTGA--ATAGT-----CTGGGCATTAGGAGCAACAGAGAATTCTATGTCTGGGCTCTGCGGAG-TGGGGGT---GCTGAGCTCCA---------------------------GATGTGGTACAGAGAGCCCGCTGGACCACCACAGAAGGGCACAGATTTCCCCT------CAATGGTCTCTATGCactct-gggggtgagcagctgtgcgcactttacagatagga i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181132620 242 + 182113224 CAGTAGTCCACACAAGGG-TTTGCCACGT--------GCTCAGGAATC----------------TC-------------A----------GGCTATTGGACTTC----CTAAA-----TTAGACAAAGATCGGTGTGGAGGGTTCCATGCCTGGAAACTAGGGGCAT--GGGT---CATGAGCAACAAAGACATCAGAGA-TGTGT--------CACCTTTCACAATGGAATCAATAGGC-ATTCTGGAAGATAT--------------CAGTTGGTCTTCACAAAGTCCAGGAAGCCAGGAGTGGCTGTTACCACCTTACTGAT-GAA i mm10.chr2 C 0 C 0 s canFam3.chr24 47099533 276 + 47698779 AAGGGG-----ACCCTGGGGCTGCCACACCCGCAGCACCTCAGGCCTCGGGCCAGCGACCAGCACC-------------CAGCAGGAGA-GACGTCTGA----TGCGGGTGGGGCTGCGTGGGGGGGGGGGTCAGCGCAGGGCTGCAGGC-------CTGGGGGC-C--TGGGAAGGGTGACAAGCA-----GGCGGGACATGTGT--------CACCCTCCGGGGCCAGCCCACTGGGCC-TCCTGG--GAGTC-GACCGCCCCCC-GCAGCCCCTCTGCACGGGCCCTGGG-GGCAAGGAGCCGTGGTGCCCACCCTCCCAAC-GGA i canFam3.chr24 C 0 N 0 a score=1245859.000000 s hg38.chr20_KI270871v1_alt 57629 138 + 58661 AAACTGAGGTTTGCAGAGGTTCTGAGACCAGCCCCCAGTGTCCAACC-CGAGGCAGGACCAGAAACCCTGCTCTCCAGC------CCCGCC----GCTTAG-AAAAAATC---CCCCTCCCAAAGGGGCC-------GCCT---CCCTGAGTCCAAGCCA------------CCC s panTro5.chr20 65633776 137 + 66533130 aaactgaggtttgcagaggttctgagaccagcccCCAGTGTCCAACC-CGAGGCAGGACCAGAAACCCTGCTCTCCAGC------CCTGCC----CCTTAG--AAAAATC---CCCCTCCCAAAGGGGCC-------GCCT---CCCTGAGTCCAAGCCA------------CCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61392991 137 + 62195757 aaactgaggtttgcagaggttctgagaccagcccCCAGTGTCCAACC-CGAGGCAGGACCAGAAACCCTGCTCTCCAGC------CCTGCC----CCTTAG--AAAAATC---CCCCTCCCAAAGGGGCC-------GCCT---CCCTGAGTCCAAGCCA------------CCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807386 136 - 1017659 AAACTGAGGTTTGCAGAGGCTCTGAGACCAGCCCCCCGTGTCCAACC-CGAGGCAGGACCAGAAACCCTGCTCTCCAGC------CCTGCC-----CTTAG--AAAAAAT---CCCCTCCCAAAGGGGCC-------GCCT---CCCTGAGTCCAAGCCA------------CCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109297950 138 - 110113093 AAACTGAGGTTTGCAGAGGTTTTCAGACCAGCCCCCAGTGCCCAACC-CGAGGCAGAACCAGAAACCCTGCTCTCCAGC------CCTGCC----CCTCAG-AAAAAATC---CCCCTCCCAAAGGGGCT-------GCCT---CCCTGAGTCCAAGCCA------------CCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015024 138 - 92844088 AAACTGAGGTTTGCAGAGGTTCTGAGACCAGCCCCCAGTGTCCAACC-CGGGGCAGGATCAGAGACCCTGCTCTCCAGC------CCTGAC----CCTCAG-AAAAAATC---CCCCTGCCAAAGGGGCT-------GCCT---CCCTGAGGCCAAGCCA------------CCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664280 138 + 96509753 AAACTGAGGTTTGCAGAGGTTCTGAGACCAGCCCCCAGTGTCCAACC-CGGGGCAGGATCAGAGACCCTGCTCTCCAGC------CCTGAC----CCTCAG-AAAAAATC---CCCCTGCCAAAGGGACT-------GCCT---CCCTGAGGCCAAGCCA------------CCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115159 138 - 16982598 AAACTGAGGTTTGCAGAGGTTCTGAGACCAGCCCCCAGTGTCCAACC-CGGGGCAGGATCAGAGACCCTGCTCTCCAGC------CCTGAC----CCTCAG-AAAAAATC---CCCCTGCCAAAGGGGCT-------GCCT---CCCTGAGGCCAAGCCA------------CCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963165 139 - 3785965 aaactgaggtttgcagaggttctgagaccagcccCCAGTGTCCAACC-CGGGGCAGGATCAGAGACCCTGCTCTCCAGC------CCTGAC----CCTCAGAAAAAAATC---CCCCTGCCAAAGGGGCT-------GCCT---CCCTGAGGCCAAGCCA------------CCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89630865 138 - 90373283 aaactgaggtttgcagaggttctgagaccagcccCCAGTGTCCAACC-CAGGGCAGGATCAGAGACCCCGCTCTCCAGC------CCCGAC----CCTCAG-AAAAAATC---CCCCTGCCAAAGGGGCT-------GCCT---CCCTGAGGCCAACCCA------------CCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520389 138 + 6149316 aaactgaggtttgcagaggttctgagaccagcccCCAGTGTCCAATC-TGGGGCAGGATCAGAGACCCTGCTCTCCAGC------CCTGAC----CCTCAG-AAAAAATC---CCCCTGCCAAAGGGGCT-------GCCT---CCCTGAGGCCAAGCCA------------CCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4741910 163 - 5823884 aaactgaggtttgcagaggttctgagaccagcccCCAGTGTCCAACC-CGGGGCAGGATCAGAGACCCTGCTCTCCAGC------CCTGAC----ACTCAG-AAAAAATCCCGCCCACGGCAAAGGAGCTGAGGAGAGCCTAGGAGCCGGGGCTCAGGCAGGTTCAGGGAGCTGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454720 133 + 159171411 AAACTGAGGTATGCAGAGGTTCTGAGACCGGCCCCAAGTGTCCAACC-CGAGGCAGGACCAGAGGCCCTGCTCTCTGGC------CCTGCC----CCTCAG-AAA--------ACCCAGCCAGTAGGGCC-------GCCT---CCCTGAGTCCAAGCCA------------CCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15572913 131 + 16356641 AAACTGACGTATGCAGAGGCTCTGCGACCAGCCCCAAGTGTCCAACC-CGAGGCAGGACCAGAGACCCTGCTCTCTGGC------CCTG-A----CCTCAG-AAA--------GTCCAGCCAGTGGGGCT-------G-CT---CCCTGAGTCCAAGCCA------------CCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422174 133 + 1231380 AAACTGACATATGCAGAGGTTCTGCGGCCAGCCCCAAGTGTCCAACC-TGAGGCAGGACCAAAGACCCTGCTCTCCGGC------CCTGCC----CCTCGG-AAA--------ATCCAGAGAGTGGGGCC-------ACCT---CCCTGAGTCCAAGCCA------------CCC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1979416 133 + 11732439 AAACTGACGTATGCAGAGGTTCTGAGACCAGCCCCAAGTGTCCAACC-CGAGGCAGGACCAGAGACCCTGCTCTCCGGC------CCTGCC----CCTCAG-AAA--------ATCCAGCCAGTGGGGCC-------GCCT---CCCTGAGTCCAAGCCA------------CCC i aotNan1.NW_018500483v1 C 0 I 11 s otoGar3.GL873542 22191088 149 + 22939663 aaaatgaggcttgcagagattctgagaccaggcctgagtgcccaattgagagtcagtgccagagccCTTGTTTTTCACCATCCCTCCTGCCCACACCCCAG--AGGGAAC---CCCCTGCTCGTGGGGAC-------ACCT--GCCCTGAGTCCAAGCCT------------CAC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181132862 98 + 182113224 --------------AGGGGTTCTGGGTCTAGACATT-GTGTCTGGCC------CTGAATTAGCAACCA--------AAG------ACTGTT----CTTCTT-CAATGCTC---TCCCTC---------CT-------GC-----CCTTAATCCCAAGACA------------TC- i mm10.chr2 C 0 C 0 a score=-31526.000000 s hg38.chr20_KI270871v1_alt 57767 29 + 58661 CTGCCCACAGCAAAGGAGCTGAGGAGAGC s panTro5.chr20 65633913 29 + 66533130 CTGCCCACAGCAAAGGAGCTGAGGAGAGC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393128 29 + 62195757 CTGCCCACAGCAAAGGAGCTGAGGAGAGC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807522 29 - 1017659 CTGCCCACAGCAAAGGAGCTGAGGAGAGC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298088 3 - 110113093 CTG-------------------------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015162 4 - 92844088 CTGC------------------------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664418 4 + 96509753 CTGC------------------------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115297 4 - 16982598 CTGC------------------------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963304 4 - 3785965 CTGC------------------------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631003 4 - 90373283 CTGC------------------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520527 4 + 6149316 CTGC------------------------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742073 4 - 5823884 ATGC------------------------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454853 17 + 159171411 -------TGGCCAGGGAGCTGAGG----- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573044 17 + 16356641 -------TGGCCGGGGAGCTGGGG----- i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422307 17 + 1231380 -------TGACCAGGGAGCTGGGG----- i cebCap1.NW_016107870v1 C 0 C 0 s otoGar3.GL873542 22191237 19 + 22939663 ----------TGAGGGACTTGATGAAAAC i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181132960 0 + 182113224 C e aotNan1.NW_018500483v1 1979549 11 + 11732439 I a score=163850.000000 s hg38.chr20_KI270871v1_alt 57796 50 + 58661 CTGGGA-------GCTCAGGGAGGTTCAGGGAGCTCCGTGCCCACAGCAAAGGAGCT s panTro5.chr20 65633942 57 + 66533130 CTGGGAGCTGGGGGCTCAGGGAGGTTCAGGGAGCTCCGTGCCCACAGCAAAGGAGCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393157 57 + 62195757 CTGGGAGCTGGGGGCTCAGGGAGGTTCAGGGAGCTCCGTGTCCACAGCAAAGGAGCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807551 57 - 1017659 CTGGGAGCTGGGGGCTCAGGGAGGTTCAGGGAGCTCCATGCCCACAGCAAAGGAGCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298091 16 - 110113093 -----------------------------------------CCACAGCAAAGGAGCT i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015166 16 - 92844088 -----------------------------------------CCACAGCAAAGGAGCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664422 16 + 96509753 -----------------------------------------CCACAGCAAAGGAGCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115301 16 - 16982598 -----------------------------------------CCACAGCAAAGGAGCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963308 16 - 3785965 -----------------------------------------CCACAGAAAAGGAGCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631007 16 - 90373283 -----------------------------------------CCACAGCAAAGGAGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520531 16 + 6149316 -----------------------------------------CCACAGCAAAGGAGCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742077 16 - 5823884 -----------------------------------------CCACAGCAAAGGAGCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454870 44 + 159171411 -------------GCTCAGGGAGGTTCAGGGAGCCCCGTGCCCACAGCAAAGGAGCT i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573061 44 + 16356641 -------------GCTCAGGGAGGTTCAGGGAGCCCCGTGCTCAGAGCAAAGGAGCT i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422324 44 + 1231380 -------------GCTCAGGGAGGTTCAGGGAGCCCCGTGCCCACAGCAAAGGAGCT i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1979560 50 + 11732439 -------CTGGGGGCCCAGGGAGGTTCAGGGAGCCCCGTGCCCACAGTGAAGGAGCT i aotNan1.NW_018500483v1 I 11 I 307 s otoGar3.GL873542 22191256 23 + 22939663 ----------------------------------CCTGTGCCCACAGCAAGGGAGTC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181132960 34 + 182113224 -----------------------GCCCTGAAAGATCCAGCCACAAAGTATAGAAGCC i mm10.chr2 C 0 C 0 a score=617255.000000 s hg38.chr20_KI270871v1_alt 57846 84 + 58661 GAGGAGAGGCCTAGTGCAGGCTGGAAGGCGGGGCTGTTCAG-ACGTTGAGGGT-CTCG--CCTGAAG-CCCCCGCATGCT-----------GCTGCTCTA s panTro5.chr20 65633999 84 + 66533130 GAGGAGAGGCCTAGTGCAGGCTGGAAGGCGGGGCTGTTCAG-ACGTTGAGGGT-CTCG--CCTGAAG-CCCCCGCATGCT-----------GCTGCTCTA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393214 84 + 62195757 GAGGAGAGGCCTAGTGCAGGCTGGAAGGCGGGGCTGTTCAG-ACGTTGAGGGT-CTCG--CCTGAAG-CCCCCGCATGCT-----------GCTGCTCTA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807608 83 - 1017659 GAGGAGAGGCCTAGTGCAGGCTGGAAGGCGGGGCTGTTCAG-ACGTTGAAGGT-CTCG--CCTGAAG--CCCCGCATGCT-----------GCTGCTCTA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298107 85 - 110113093 GAGGAAGAGGCTAGTGCAGGGCTGAGGGCGGGGCTGTTCGG-ACGTTGAGGGTCCTGG--CCTGAAG-CCCCCACATGCT-----------GCTGCTCTA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015182 84 - 92844088 GAGGAGAGGCCTAGTGCAGGCTGGAGGGCGGGGCTGTTCGG-ACGTTGAGGGG-CTCG--CCTGAAG-CCCCCACAAGCT-----------GCTGCTCTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664438 84 + 96509753 GAGGAGAGGCCTAGTGCAGGCTGGAGGGCGGGGCTGTTCGG-ACGTTGAGGGG-CTCG--CCTGAAG-CCCCCACAAGCT-----------GCTGCTCTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115317 84 - 16982598 GAGGAGAGGCCTAGTGCAGGCTGGAGGGCGGGGCTGTTCGG-ACGTTGAGGGG-CTCG--CCTGAAG-CCCCCACAAGCT-----------GCTGCTCTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963324 84 - 3785965 GAGGAGAGGCCTAGTGCAGGCTGGAGGGCGGGGCTGTTCGG-ACATTGAGGGG-GTCG--CCTGAAG-CCCCCACAAGCT-----------GCTGCCCTG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631023 84 - 90373283 GAGGAGAGGCCTGGTGCAGGCTGGAGGGTGGGGCTGTTCGG-ACGTCGAGGAG-GTTG--CCTGAAG-CCCCCACAAGCT-----------GCTGCTCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520547 84 + 6149316 GAGGAGAGGCCTAGTGCAGGCTGGAGGGCGGGGCTGTTCGG-ACGTTGAGGGG-GTCG--CCTGAAG-CCCCCACAAGCT-----------GCTGCCCTG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742093 83 - 5823884 GAGGAGAGGCCTAGTGCAGGCTGGAGGGCGGGGGCGTTCGG-A-GTTGAGGGT-GTCA--CCTGAAG-CCCCCACAAACT-----------GCTGCTCTG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454914 79 + 159171411 ---GAGAGGCCTGGTGCAGGTGGGAGGGC-AGGCTGCTTCG-ATGCTGAGGGT-CTCC--CCAGAA--TCCCCACATGCT-----------GCTGCTCTA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573105 78 + 16356641 ---GAGAGGCCTGGTGCAGGCGGGAGGGC-GGGCTGCTCGG-ATGCT-AAGGT-CTCC--CCAGAA--TCCCCACATGCT-----------GCTGCTCTA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422368 79 + 1231380 ---GAGAGGCCTGGTGCAGGCAGGAGGGC-GGGCTGCTCAG-ATGCTGAGGGT-CTCC--CCAGCA--TCCCCACATGCT-----------GCTGCTCTA i cebCap1.NW_016107870v1 C 0 I 31 s otoGar3.GL873542 22191279 95 + 22939663 AGAGAGAGGCCTAA-GCAGACT-GTGGGCTGGGCTGCCCTGCATAGCAAGGGT-CTCA--CCCAAAAACCTCCACAGGCTGCAGGGGCAGAGCTGCTCCA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181132994 60 + 182113224 ---AAGGGACTTGCAGCATGCTGTATGTC-------TTCAT---------GGT-CTAAACCCTAAAG-TC----CGGGAC-----------ACTGC---- i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979610 307 + 11732439 I a score=4095.000000 s hg38.chr20_KI270871v1_alt 57930 1 + 58661 T s panTro5.chr20 65634083 1 + 66533130 T i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393298 1 + 62195757 T i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807691 1 - 1017659 T i gorGor5.CYUI01015750v1 C 0 C 0 s rheMac8.chr10 92015266 1 - 92844088 T i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664522 1 + 96509753 T i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115401 1 - 16982598 T i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963408 1 - 3785965 T i cerAty1.NW_012001373v1 C 0 C 0 s manLeu1.NW_012104365v1 5520631 1 + 6149316 T i manLeu1.NW_012104365v1 C 0 I 11 s otoGar3.GL873542 22191374 1 + 22939663 T i otoGar3.GL873542 C 0 C 0 e nomLeu3.chr13 109298192 0 - 110113093 C e mm10.chr2 181133054 0 + 182113224 C e aotNan1.NW_018500483v1 1979610 307 + 11732439 I e cebCap1.NW_016107870v1 422447 31 + 1231380 I e saiBol1.JH378156 15573183 0 + 16356641 C e calJac3.chr5 57454993 0 + 159171411 C e colAng1.NW_012114444v1 4742176 0 - 5823884 C e chlSab2.chr2 89631107 0 - 90373283 C a score=11633.000000 s hg38.chr20_KI270871v1_alt 57931 28 + 58661 CTTAGAGGGGGCCCGTCCGGACTGGGGG s panTro5.chr20 65634084 28 + 66533130 CTTAGAGGGGGCCCGTCCGGACTGGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393299 28 + 62195757 CTTAGAGGGGGCCCGTCCGGACTGGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807692 27 - 1017659 CTTAGA-GGGGCCCGTCCGGACTGGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298192 25 - 110113093 --TAGA-GGGGCCTGTCCGGACTCGGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015267 10 - 92844088 ------------------AGACTCAGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664523 10 + 96509753 ------------------AGACTCAGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115402 10 - 16982598 ------------------AGACTCAGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963409 12 - 3785965 ----------------AGAGACTCAGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631107 13 - 90373283 ---------------TAGAGACTTAGGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012114444v1 4742176 22 - 5823884 --TAGA----CTCTATAGAGACTCAGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57454993 25 + 159171411 --CAGA-GGGGCCAATCCTGACCCAGGG i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573183 24 + 16356641 --CAGA-GGGG-CGTTCCCAACCCAGGG i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22191375 24 + 22939663 ----GGAGAGACCCATCCTGACCCGGGG i otoGar3.GL873542 C 0 I 1 s mm10.chr2 181133054 23 + 182113224 -----AGGGGGCAGGAGTGGTTCTATGG i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979610 307 + 11732439 I e cebCap1.NW_016107870v1 422447 31 + 1231380 I e manLeu1.NW_012104365v1 5520632 11 + 6149316 I a score=33505.000000 s hg38.chr20_KI270871v1_alt 57959 10 + 58661 ---------TGGTCAGGAA- s panTro5.chr20 65634112 10 + 66533130 ---------TGGTCAGGAA- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393327 10 + 62195757 ---------TGGTCAGGAA- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807719 10 - 1017659 ---------TGGTCAGGAA- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298217 10 - 110113093 ---------TGGTCAGGAG- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015277 10 - 92844088 ---------TCGTCAGGAG- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664533 10 + 96509753 ---------TCGTCAGGAG- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115412 10 - 16982598 ---------TCGTCAGGAG- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963421 10 - 3785965 ---------TCGTCAGGAG- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631120 10 - 90373283 ---------TCGTCAGGAG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520643 10 + 6149316 ---------TCGTCAGGAG- i manLeu1.NW_012104365v1 I 11 C 0 s colAng1.NW_012114444v1 4742198 10 - 5823884 ---------TTGTCAGGAG- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455018 7 + 159171411 ---------CCCTCAG---- i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573207 7 + 16356641 ---------CCCTCGG---- i saiBol1.JH378156 C 0 C 0 s otoGar3.GL873542 22191400 10 + 22939663 ---------CACCCAGGTG- i otoGar3.GL873542 I 1 C 0 s mm10.chr2 181133077 20 + 182113224 TGGGAAATGTAGATGGGGAA i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979610 307 + 11732439 I e cebCap1.NW_016107870v1 422447 31 + 1231380 I a score=489534.000000 s hg38.chr20_KI270871v1_alt 57969 57 + 58661 GAGACGGCTCAGACCCCACATGTGCAAGTG-TCCCCATGCTTTGCCCCAGTTCTGGAC-- s panTro5.chr20 65634122 57 + 66533130 GAGACGGCTCAGACCCCACATGTGTAAGCG-TCCCCATGCTTTGCCCCAGTTCTGGAC-- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393337 57 + 62195757 GAGACGGCTCAGACCCCACATGTGCAAGCG-TCCCCATGCTTTGCCCCAGTTCTGGAC-- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807729 57 - 1017659 GAGACGGCTCAGACCCCACATGTGCAAGCG-TCCCCATGCTTTGCCCCAGTTCTGGAC-- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298227 57 - 110113093 GAGACAGCTCAGACCCCACATGTGCAAGCG-TCCCCATGCTTTGCCCCAGTTCTGGAC-- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015287 58 - 92844088 GAGACGGCGCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664543 58 + 96509753 GAGACGGCGCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115422 58 - 16982598 GAGACGGCGCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963431 58 - 3785965 GAGACGGCGCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631130 58 - 90373283 GAGATGGCTCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520653 58 + 6149316 GAGACGGCGCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742208 58 - 5823884 GAGATGGCTCAGACCCCACATGTGCAAGCGCTCCCCATGCTTCACCCCAGTTCTGGAC-- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455025 56 + 159171411 GAGACAGCTCAGACCCCAA--GTGCAAGGGCTCCCCATGCTTTATCGCAGTTCTGGAC-- i calJac3.chr5 C 0 I 2 s saiBol1.JH378156 15573214 56 + 16356641 GAGACGGCTCAGACCCCAC--ATGCAAGGGCTCCCCATGCTTTGCCCCAGTTCTGGAC-- i saiBol1.JH378156 C 0 I 2 s cebCap1.NW_016107870v1 422478 56 + 1231380 GAGACGGCTCAGACCCCAC--GTGCAAGGGCTCCCCATGCTTTGCCCCAGTTCTGGAC-- i cebCap1.NW_016107870v1 I 31 I 235 s otoGar3.GL873542 22191410 43 + 22939663 GAGGTGACACAGCCCCTACCCATGGAA------CCCATG------CCCAGCTCAT----- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133097 56 + 182113224 ---GGGACACAGATCCCATA-AAGCAAGGACCTCCCACACTGGGCTGGAGCTCCAGGTGC i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979610 307 + 11732439 I a score=274208.000000 s hg38.chr20_KI270871v1_alt 58026 41 + 58661 TGCTGCTCTCAGGAGGCAGAGACAGGAAGGAGAGACAGAGG s panTro5.chr20 65634179 41 + 66533130 TGCTGCTCTCAGGAGGCAGAGACAGGAAGGAGAGACAGAGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393394 41 + 62195757 TGCTGCTCTCAGGAGGCAGACACAGGAAGGAGAGACAGAGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807786 41 - 1017659 TGCTGCTCTCAGGAGGCAGAGACAGGAAGGAGAGACAGAGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298284 41 - 110113093 TGCCGCTCTCAGGAGGCAGAGACAGGAAGGAGGGACAGAGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015345 41 - 92844088 TGCCACTCTCAGGAGGCAGAGACAGGAAGGAGGAACGGAGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664601 41 + 96509753 TGCCACTCTCAGGAGGCAGAGACAGGAAGGAGGAACGGAGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115480 41 - 16982598 TGCCACTCTCAGGAGGCAGAGACAGGAAGGAGGAACGGAGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963489 41 - 3785965 TGCCACTCTTAGGAGGCAGAGACAGGAAGGAGGAACAGAGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631188 41 - 90373283 TGCCACTCTCAGGAGGCAGAGACAGGAAGGAGGAACAGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520711 41 + 6149316 TGCCACTCTCAGGAGGCAGAGACAGGAAGGAGGAACAGAGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742266 40 - 5823884 TGCCACTCTCAGGAGGCAGAGACAGGAAGGA-GAACAGAGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455083 41 + 159171411 GGCAGCTCTCAGGAGACAGAAATAGAAAACAGTgacagagg i calJac3.chr5 I 2 I 182 s saiBol1.JH378156 15573272 41 + 16356641 GGTCACTCTCAGGAGGCAGAAATCGGAAGGAGGAACAGAGG i saiBol1.JH378156 I 2 I 8 s otoGar3.GL873542 22191453 2 + 22939663 TG--------------------------------------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133153 30 + 182113224 TTCTACTGTTAGGGAACAGAAGTAGAGAAA----------- i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979610 307 + 11732439 I e cebCap1.NW_016107870v1 422534 235 + 1231380 I a score=439568.000000 s hg38.chr20_KI270871v1_alt 58067 68 + 58661 GGCTGACCCACGCAGGCCCAGGCAGGGGGC-GGCCATGCGGAGA-GCTGCTGACCCAAC------GGGAAACCTCA s panTro5.chr20 65634220 68 + 66533130 GGCTGACCCACGCAGGCCCAGGCAGGGGGC-GGCCATGCGGAGA-GCTGCTGACCCAAC------GGGAAACCTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393435 68 + 62195757 GGCTGACCCACGCAGGCCCAGGCAGGGGGC-GGCCATGCAGAGA-GCTGCTGACCCAAC------GGGAAACCTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807827 68 - 1017659 GGCTGACCCACGCAGGCCCAGGCAGGGGGC-GGCCATGCGGAGA-GCTGCTGACCCAAC------GGGAAACCTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298325 68 - 110113093 GGCTGACCCACGCAGGCCCGGGCGGGGGTC-GGCCATGCGGAGA-GCTGCTGACCCAAC------GGGAAACCTCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015386 67 - 92844088 GGCTGACCCACACAGGCCCAGGCAGGGGGC-GGCCA-GCGGAGA-GCTGTGGACCCAAC------GGGAAACCTCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664642 67 + 96509753 GGCTGACCCACACAGGCCCAGGCAGGGGGC-GGCCA-GCGGAGA-GCTGTGGACCCAAC------GGGAAACCTCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115521 67 - 16982598 GGCTGACCCACACAGGCCCAGGCAGGGGGC-GGCCA-GCGGAGA-GCTGTGGACCCAAC------GGGAAACCTCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963530 67 - 3785965 GGCTGACCCACACAGGCCCAGGCAGGGGGC-GGCCA-GCGGAGA-GCTGTGGACCCAAC------GGGAAACCTCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631229 67 - 90373283 GGCTGACCCACGCAGGCCCAGGCAGGGGGC-GGCCA-GCGGAGA-GCTGCTGACCGGAC------GGGAAACCTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520752 67 + 6149316 GGCTGACCCACACAGGCCCAGGCAGGGGGC-GGCCA-GCAGAGA-GCTGTGGACCCAAC------GGGAAACCTCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742306 67 - 5823884 GGCTGACCCACGCAGGCCCAGGCAGGGGGC-GGCCA-GTGGAGA-GCTGCTGACCCAAC------AGGAAACCTCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455306 66 + 159171411 GGCTGACCAACACAGGCCCAGGCAGGGG-T-GGCCAGGCAGAAA-GCTGCTGGCCTGAC------AGG-AGCCTCA i calJac3.chr5 I 182 I 17 s saiBol1.JH378156 15573321 66 + 16356641 GGCTGACCAACGCAGGCCCAGGCAGGGG-C-GGCCAGGCAGAGA-GCTGCTGGCCTGGC------AGG-AGCCTCA i saiBol1.JH378156 I 8 I 17 s otoGar3.GL873542 22191455 15 + 22939663 ---------------------------------------------------GACCCAAA------GTAGAAC---- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133183 72 + 182113224 ---TCAACCAGTCAGACTTAGGGATAGAACAGGACA-CCATAGAGGCTACAGACCCTTCCCCCCAAAGATTCCTAG i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979610 307 + 11732439 I e cebCap1.NW_016107870v1 422534 235 + 1231380 I a score=304551.000000 s hg38.chr20_KI270871v1_alt 58135 42 + 58661 --GGAACAGCCACGCTGGGCCCTTGGATCATGGACTCAAAGCAG s panTro5.chr20 65634288 42 + 66533130 --GGAACAGCCACGCTGGGCCCTTGGATCATGGACTCAAAGCAG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393503 42 + 62195757 --GGAACAGCCACGCTGGTCCCTTGGATCATGGACTCAAAGCAG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807895 42 - 1017659 --GGAACAGCCACGCTGGGCCCTTGGATCATGGACTCACAGCAG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298393 42 - 110113093 --GGAACAGCCACGCTGGGCCCTTGGATCATGGACTCAAAGCAG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015453 42 - 92844088 --GGAATAGCCAGGCTGGGCCCTTGGATCATGGGCTCAAAGCAG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664709 42 + 96509753 --GGAATAGCCAGGCTGGGCCCTTGGATCATGGGCTCAAAGCAG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115588 42 - 16982598 --GGAATAGCCAGGCTGGGCCCTTGGATCATGGGCTCAAAGCAG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963597 42 - 3785965 --GGAATAGCCAGGCTGGGCCCTTGGATCATGGGCTCAAAGCAG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631296 42 - 90373283 --GGAATAGCCAGGCTGGGCCCTCGGATCACAGGCTCAAAGCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520819 42 + 6149316 --GGAAGAGCCAGGCTGGGCCCTTGGATCATGGGCTCAAAGCAG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742373 42 - 5823884 --GGAATAGCCAGGCTGGGCCCTTGGATCATGGGCTCAAAGCAG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455389 42 + 159171411 --GGAACAGCCACGCTCAGCCCAGGGGTCCTGGACTCAAAGCAG i calJac3.chr5 I 17 C 0 s saiBol1.JH378156 15573404 37 + 16356641 --GGAACAGCCAC-----GGCCAGGGGTCCTGGACTCAAAGCAC i saiBol1.JH378156 I 17 C 0 s aotNan1.NW_018500483v1 1979917 42 + 11732439 --GGAACAGCCACGCTCGGCCCAGGGATCCCGGACTCAAAGCAG i aotNan1.NW_018500483v1 I 307 I 23 s otoGar3.GL873542 22191470 17 + 22939663 ----------------AAGCCCTCAGGT-----------AGCAG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133255 26 + 182113224 ATAATGCTGCCAGCCTGGGCATCCAC------------------ i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 422534 235 + 1231380 I a score=49263.000000 s hg38.chr20_KI270871v1_alt 58177 11 + 58661 AACCAACCC------------TG s panTro5.chr20 65634330 11 + 66533130 AACAAACCC------------TG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393545 11 + 62195757 AACAAACCC------------TG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807937 11 - 1017659 AACAAACCC------------TG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298435 11 - 110113093 AACGAACCC------------CG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015495 23 - 92844088 AACAAACCCCGGGCAGCACCGTG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664751 23 + 96509753 AACAAACCCCGGGCAGCACCGTG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115630 23 - 16982598 AACAAACCCCGGGCAGCACCGTG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963639 23 - 3785965 AACAAACCCCGGGCAGCACCATG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631338 23 - 90373283 AACAAACCCCGGGCAGCACCGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520861 23 + 6149316 AACAAACCCCGGGCAGCACCATG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742415 23 - 5823884 AACAAACCCCGGGCAGCACCATG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455431 11 + 159171411 AACAAACCCCG------------ i calJac3.chr5 C 0 I 12 s saiBol1.JH378156 15573441 11 + 16356641 AACGAACCCCT------------ i saiBol1.JH378156 C 0 I 12 s otoGar3.GL873542 22191487 7 + 22939663 ----------------TAGCATG i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133281 11 + 182113224 ACCCAGCCCTG------------ i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1979959 23 + 11732439 I e cebCap1.NW_016107870v1 422534 235 + 1231380 I a score=193084.000000 s hg38.chr20_KI270871v1_alt 58188 28 + 58661 GGTCAGACGCAGAGCGGGGCGCTGGCC----A s panTro5.chr20 65634341 28 + 66533130 GGTCAGACGCAGAGCGGGGCGCTGGCC----A i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393556 28 + 62195757 GGTCAGACGCAGAGCGGGGCGCTGGCC----A i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807948 28 - 1017659 GGTCAGACGCAAAGCGGGGCGCCAGCC----A i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298446 28 - 110113093 GGTCAGACGCAGAGCGGGGCGCCGGCC----A i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015518 32 - 92844088 GGTCAAACGCAGAGTGGGGCTCCGGCCACTGA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664774 32 + 96509753 GGTCAAACGCAGAGTGGGGCTCCGGCCACTGA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115653 32 - 16982598 GGTCAAACGCAGAGTGGGGCTCCGGCCACTGA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963662 32 - 3785965 GGTCAAACGCAGAGTGGGGCTCCGGCCACTGA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631361 32 - 90373283 GGTCAAACGCAGAGTGGGGCTCTGGCCCCTGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520884 32 + 6149316 GGTCAAACGCAGAGTGGGGCTCCGGCCACTGA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742438 32 - 5823884 GGTCAAACGCAGAGTGGGGCTCTGGCCACTGA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455454 28 + 159171411 GGTCAGACACAGAGCGGGGTGCCAGCCA---- i calJac3.chr5 I 12 I 10 s saiBol1.JH378156 15573464 20 + 16356641 GGTCAGACGCAGAGCGGG--------CG---- i saiBol1.JH378156 I 12 I 10 s aotNan1.NW_018500483v1 1979982 28 + 11732439 GGTCAGACGCAGAGTGGGGCGCCGGCCA---- i aotNan1.NW_018500483v1 I 23 I 37 s otoGar3.GL873542 22191494 28 + 22939663 GGTCAGATGCAGAGCAGGGCACTGATCA---- i otoGar3.GL873542 C 0 I 11 s mm10.chr2 181133292 8 + 182113224 ---TGGACACA--------------------- i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 422534 235 + 1231380 I a score=49606.000000 s hg38.chr20_KI270871v1_alt 58216 8 + 58661 GGCTGTCA s panTro5.chr20 65634369 8 + 66533130 GGCTGTCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393584 8 + 62195757 GGCTGTCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807976 8 - 1017659 GGCTGTCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298474 8 - 110113093 GGCTGTGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015550 8 - 92844088 GGCCGTCG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664806 8 + 96509753 GGCCGTCG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115685 8 - 16982598 GGCCGTCG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963694 8 - 3785965 GGCCATCG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631393 8 - 90373283 GGCCGTCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520916 8 + 6149316 GGCCATCG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742470 8 - 5823884 GGCCATCG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455492 8 + 159171411 GGCCACCT i calJac3.chr5 I 10 C 0 s saiBol1.JH378156 15573494 8 + 16356641 GGCCACCT i saiBol1.JH378156 I 10 C 0 s otoGar3.GL873542 22191533 8 + 22939663 GGCCACCT i otoGar3.GL873542 I 11 C 0 e mm10.chr2 181133300 0 + 182113224 C e aotNan1.NW_018500483v1 1980010 37 + 11732439 I e cebCap1.NW_016107870v1 422534 235 + 1231380 I a score=155543.000000 s hg38.chr20_KI270871v1_alt 58224 20 + 58661 GGGCAGGAGGGTTGTGGGGG s panTro5.chr20 65634377 20 + 66533130 GGGCAGGAGGGCTGTGGGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393592 20 + 62195757 GGGCAGGAGGGCTGTGGGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 807984 20 - 1017659 GGGCAGGAGGGCTGTGGGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298482 20 - 110113093 GGGCTGGAGGGCTGTGGGGG i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015558 19 - 92844088 GGGCAGGAGGGCTGT-GGGG i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664814 19 + 96509753 GGGCAGGAGGGCTGT-GGGG i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115693 19 - 16982598 GGGCAGGAGGGCTGT-GGGG i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963702 19 - 3785965 GGGCAGGAGGGCTGT-GGGG i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631401 19 - 90373283 GGGCAGGAGGGCTGT-GGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520924 19 + 6149316 GGGCAGGAGGGCTGT-GGGG i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742478 19 - 5823884 GGGCAGGAGGGCTGT-GGGG i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455500 19 + 159171411 GGGGAGGAGGGCCGT-GGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573502 19 + 16356641 GGGCAAGAGGGCCGT-GGGC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422769 19 + 1231380 GGGCAGGAGGGCTGT-GGGC i cebCap1.NW_016107870v1 I 235 C 0 s otoGar3.GL873542 22191541 15 + 22939663 -AGCCAGTGGGCTGT-G--- i otoGar3.GL873542 C 0 C 0 e mm10.chr2 181133300 0 + 182113224 C e aotNan1.NW_018500483v1 1980010 37 + 11732439 I a score=778450.000000 s hg38.chr20_KI270871v1_alt 58244 78 + 58661 TGGGTTCTATCCTACCCTCCTCCGGGGAGTCACCTTGGGCAGGGACCTGGCTGACCAGTACCGGCCCACC-A----AGAGCCC s panTro5.chr20 65634397 78 + 66533130 TGGGTTCTATCCTGCCCTCCTCTGGGGAGTCACCTTGGGCAGGGACCTGGCTGACCAGTACCGGCCCACC-A----AGAGCCC i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393612 78 + 62195757 TGGGTTCTATCCTGCCCTCCTCTGGGGAGTCACCTTGGGCAGGGACCTGGCTGACCAGTACCGGCCCACC-A----AGAGCCC i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808004 78 - 1017659 TGGGTTCTATCCTGCCCTTCTCCGGGGAGTCACCTTGGGCAGGGACCTGGCTGAGCAGTACCGACCCACC-A----AGAGCCC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298502 78 - 110113093 TGGGTTCTATCCTGTCCTCCTCCAGGGAGTCACCTTGAGCCGAGACCTGGCTGACCAGTAGCGGCCCACC-A----AGAGCCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015577 78 - 92844088 TGGGTTCTGTCCTGTCCTCGTCCCAGGAGTCACCTTGGGCTGAGACCTGGCTGACCAGTACCGGCCCTCC-A----AGAGCCC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664833 78 + 96509753 TGGGTTCTGTCCTGTCCTCGTCCCAGGAGTCACCTTGGGCTGAGACCTGGCTGACCAGTACCGGCCCTCC-A----AGAGCCC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115712 78 - 16982598 TGGGTTCTGTCCTGTCCTCGTCCCAGGAGTCACCTTGGGCTGAGACCTGGCTGACCAGTACCGGCCCTCC-A----AGAGCCC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963721 78 - 3785965 TGGGTTCTGTCCTGTCCTCGTCCCAGGAGTCACCTTGGGCTGAGACCTGGCTGACCAGTACCGGCCCTCC-A----AGAGCCC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631420 78 - 90373283 TGGGTTCTATCCTGTCCTTGTCCCAGGAGTCACCTTGGGCTGAGACCTGGCTGACCAGTACCGGCCCTCC-A----ACAGCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5520943 78 + 6149316 TGGGTTCTGTCCTGTCCTCGTCCCAGGAGTCACCTTGGGCTGAGACCTGGCTGACCAGTACCGGCCCTCC-A----AGAGCCC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742497 79 - 5823884 TGGGTTCTGTCCTGTCCTCATCCCAGGAGTCACCTTGGGCCGAGACCTGGCTGACCAGTACCAGCCCTCCAA----AGAGCCC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455519 78 + 159171411 TGGGCTCTGTCCCACCCTCCTCACGGAAGTCACCTTGGGCTGGGACCTGACCGACCAGCACCAGTCCACC-A----AGAGCCC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573521 78 + 16356641 TGGGCTCCGTCCCATCCTCCTCACGGAAGTAACCTTGGGCTGGGACCTGACTGACCAGCACCAGTCCACC-A----AGACCCC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422788 78 + 1231380 TGGGCTCTGTCCCATCCTCCTCACGGAAGTCACCTTGGGCTGGGACCTGACTGACCAGCACCAGTCCACC-A----AGAGCCC i cebCap1.NW_016107870v1 C 0 I 74 s aotNan1.NW_018500483v1 1980047 78 + 11732439 TGGGCTCTGTCCCATCCTCCTCACGGAAGTCACCTTGGGCTGGGACCTGACTGACCAGCACCAGTCCACC-A----AGAGCCC i aotNan1.NW_018500483v1 I 37 C 0 s otoGar3.GL873542 22191556 50 + 22939663 ----------------------------GTCACTTTGGGCCAAGACCTGGCTAAACTGGCCAGTCCCGCT-G----GGAGTCC i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133300 81 + 182113224 -GGATTTCATCCTGTCTGTGTCCCAGGAGTCACCTCAGACCAGGACCTGGCTGGATGTCTACAGCCAGCC-AAAGTAGAAATG i mm10.chr2 C 0 C 0 a score=532859.000000 s hg38.chr20_KI270871v1_alt 58322 77 + 58661 CTTTGGCCCCCAGCC--------AGGTGGGGGCCATCAGGGGAGG-CCATTCCTGAGAACACAGAA---GCTCATCTGGGGATTCGGGA s panTro5.chr20 65634475 77 + 66533130 CTTTGGCCCCCGGCC--------AGGTGAGGGCCATCAGGGGAGG-CCATTCCTGAGAACACAGAA---GCTCATCTGGGGATTCGGGA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393690 77 + 62195757 CTTTGGCCCCCAGCC--------AGGTGAGGGCCATCAGGGGAGG-CCATTCCTGAGAACACAGAA---GCTCATCTGGGGATTCGGGA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808082 77 - 1017659 CTCTGGCCCCCAGCC--------AGGTGGGGGCCATCAGGGGAGG-CCATTCCTGAGAACACAGAG---GCTCATCTGGGGATTCGGGA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298580 80 - 110113093 CGTTGGCCCCCAGCC--------AGGTGGGGGCCATCAGGAGAGG-CCATTCCTGAGAACATAGAGGCTGCTCATCTGAGGATTTGGGA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015655 76 - 92844088 CTTTGGTTCCCAGCC--------AGGTGGGGGCCATAAGGAGAGG-CCGTTCCTGA-GACATAGAG---GCTCATCCGAGGATTCGGGC i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664911 76 + 96509753 CTTTGGTTCCCAGCC--------AGGTGGGGGCCATAAGGAGAGG-CCGTTCCTGA-GACATAGAG---GCTCATCCGAGGATTCGGGC i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115790 76 - 16982598 CTTTGGTTCCCAGCC--------AGGTGGGGGCCATAAGGAGAGG-CCGTTCCTGA-GACATAGAG---GCTCATCCGAGGATTCGGGC i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963799 77 - 3785965 CTTTGGTTCCCAGCC--------AGGTGGGGGCCATAAGGAGAGG-CCGTTCCTGAGGACATAGAG---GCTCATCCGAGGACTCGGGC i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631498 77 - 90373283 CTTTGGTTCCCAGCC--------AGGTGGGGGCCATAAGGAAAGG-CCGTTCCTGAGAACATAGAG---GCTCATCCGAGGATTCGAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5521021 77 + 6149316 CTTTGGTTCCCAGCC--------AGGTGGGGGCCATAAGGAGAGG-CCGTTCCTGAGGACATAGAG---GCCCATCCGAGGATTCGGGC i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742576 77 - 5823884 CTTCGGTCCCCAGCC--------AGGTGGGGGCCATAAGGAGAGG-CCGTTCCTGAGAACATAGAG---GCTCATCCAAGGACCTGGGC i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455597 74 + 159171411 -GATGG-CCCCAGCC--------AGGTAAAGGCCGAAAGGAGAGG-CCGTTCT-GGGGACATGAAG---GCTCATCCAGGACGCAGGGC i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573599 74 + 16356641 -GATGG-CCTCAGCC--------AGGTGAGGGCTGAAAGGAGAGG-CCGTTCC-GAGGACGTGGAG---GCTCATCCAGGACGCAGGGC i saiBol1.JH378156 C 0 C 0 s aotNan1.NW_018500483v1 1980125 74 + 11732439 -GATGG-CCTCAGCC--------AGGTGAGGGCCGAAAGGAGAGG-CCGTTCC-GAGGACATGGAG---GCTCATCCGGGACCCAGGGC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22191606 55 + 22939663 CTTCAGTCTCCTGCC--------AGGTGGAG-------AGGGAGG--------TGAGGGCA--GCC---CCTCCTCAGGGAGT------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133381 82 + 182113224 -TTTGGACCCCAAGAGGGCAAGGAGGTGGTGGCTACAGCAAAAGGACCATT---AGGGACACATGG---ACTCTTCCTTGGATTAAAGA i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 422866 74 + 1231380 I a score=417638.000000 s hg38.chr20_KI270871v1_alt 58399 42 + 58661 ------ATGAACCCTGGAC-TGGAAAAGCTAGACTCACCTCC-----------TGGGGGC------ s panTro5.chr20 65634552 42 + 66533130 ------ATGAACCCTGGAC-TGGAAAAGCCAGACTCACCTCC-----------TGGGGGC------ i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393767 42 + 62195757 ------ATGAACCCTGGAC-TGGAAAAGCCAGACTCACCTCC-----------TGGGGGC------ i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808159 42 - 1017659 ------ATGAACCCTGGAC-TGGAAAAGCCAGACTCACCTCC-----------TGGGGGC------ i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298660 42 - 110113093 ------ATGGACCCGGGAC-TAGAAAAGCCAGACTCACCTCC-----------TGGGGGC------ i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015731 42 - 92844088 ------ATGGACCCTGGAC-TGGAAAGGCCAGACTCACCTCC-----------TGGGGGC------ i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95664987 42 + 96509753 ------ATGGACCCTGGAC-TGGAAAGGCCAGACTCACCTCC-----------TGGGGGC------ i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115866 42 - 16982598 ------ATGGACCCTGGAC-TGGAAAGGCCAGACTCACCTCC-----------TGGGGGC------ i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963876 42 - 3785965 ------ATGGACCCTGGAC-TGGAAAGGCCGGACTCACCTCC-----------TGGGGGC------ i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631575 42 - 90373283 ------ATGGACCCTGGAC-TGGAAAGGCCAGACTCCCCTCC-----------TGGGGGC------ i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5521098 42 + 6149316 ------ATGGACCCTGGAC-TGGAAAGGCCAGACTCACCTCC-----------TGGGGGC------ i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742653 42 - 5823884 ------ATGGACCCTGGAC-TGGAAAGGCCAGACTCACCTCC-----------TGGGGGC------ i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455671 42 + 159171411 ------ATGGACCCCGGAC-TGGAAAGGCCAGACTCACATCC-----------TGGGGGC------ i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573673 40 + 16356641 ------ATGGACCCTGGAC-TGGAAAGGCCAGACACACA--C-----------TGGGGGC------ i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 422940 42 + 1231380 ------ATGAACTCGGGAC-TGGAAAGGCCAGACTCACATCC-----------TGGGGGC------ i cebCap1.NW_016107870v1 I 74 I 22 s aotNan1.NW_018500483v1 1980199 42 + 11732439 ------ATGGACCCTGGAC-TGGAAAGGCCAGATTCACATCC-----------TGGGGGC------ i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22191661 35 + 22939663 -----------CTCATAAC-TGTGCAGGTGTGTTCAGCA--C-----------TGGGGGC------ i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133463 66 + 182113224 AAAGCACAGGACCCTGGGCAAGGGAGAATCAAATTCATCTTTCTGGAGGGGGGTAGGGGCTGACAC i mm10.chr2 C 0 C 0 a score=59573.000000 s hg38.chr20_KI270871v1_alt 58441 13 + 58661 CACAGG--G--------CTTCCA s panTro5.chr20 65634594 13 + 66533130 CACAGG--G--------CTTCCA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393809 13 + 62195757 CACAGG--G--------CTTCCA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808201 13 - 1017659 CACAGA--G--------CTTCCA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298702 13 - 110113093 CAGAGG--G--------CCTCCA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015773 13 - 92844088 GGCAGG--A--------CCTCCA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95665029 13 + 96509753 GGCAGG--A--------CCTCCA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115908 13 - 16982598 GGCAGG--A--------CCTCCA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963918 13 - 3785965 GGCAGG--A--------CCTCCA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631617 13 - 90373283 GGCAGG--A--------CCTCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5521140 13 + 6149316 GGCAGG--A--------CCTCCA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742695 13 - 5823884 GGCAGG--A--------CCTCCA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455713 21 + 159171411 AGCAGG--GGCTGATGCCCTCTA i calJac3.chr5 C 0 I 1 s saiBol1.JH378156 15573713 21 + 16356641 GGCAGG--GGCTGATGCCCTCTC i saiBol1.JH378156 C 0 I 1 s aotNan1.NW_018500483v1 1980241 21 + 11732439 AGCAGG--GGCTGGTGCCCTCTC i aotNan1.NW_018500483v1 C 0 I 1 s mm10.chr2 181133529 14 + 182113224 TACAGGCTG--------CTTCC- i mm10.chr2 C 0 C 0 e cebCap1.NW_016107870v1 422982 22 + 1231380 I e otoGar3.GL873542 22191696 0 + 22939663 C a score=435975.000000 s hg38.chr20_KI270871v1_alt 58454 44 + 58661 GGACCCAGGA------GGTCGGAGAAGCTTCTG-CTTGGGGAGTCCCAGGC-------- s panTro5.chr20 65634607 44 + 66533130 GGACCCAGGA------GGTCGGAGAAGCTTCTG-CTTGGGGAGTACCAAGC-------- i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393822 44 + 62195757 GGACCCAGGA------GGTCGGAGAAGCTTCTG-CTTGGGGAGTACCAGGC-------- i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808214 44 - 1017659 GGACCCAGGA------GGTCGGAGAAGCTTCTG-CTTGGGGAGTCCCAGGC-------- i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298715 44 - 110113093 GGACCCAGGA------GGTCGGAGAAGCTTCTG-CTTGGGGAGTCCCAGGC-------- i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015786 44 - 92844088 GGACCCAGGA------GGTCGGAGAAGCCTCTG-CTTGGGGGGTCCCAGGC-------- i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95665042 44 + 96509753 GGACCCAGGA------GGTCGGAGAAGCCTCTG-CTTGGGGGGTCCCAGGC-------- i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115921 44 - 16982598 GGACCCAGGA------GGTCGGAGAAGCCTCTG-CTTGGGGGGTCCCAGGC-------- i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963931 44 - 3785965 GGACCCAGGA------GGTCGGAGAAGCCACTG-CTTGGGGGGTCCCAGGC-------- i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631630 44 - 90373283 GGACCCAGGA------GGTCGGAGAAGCCTCTG-CTTGGGGAGTCCCAGGC-------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5521153 44 + 6149316 GGACCCAGGA------GGTCGGAGAAGCCTCTG-CTTGGGGGGTCCCAGGC-------- i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742708 44 - 5823884 GGACCCAGGA------GGTGGGAGAAGCCTCTG-CTTGGGGATTCCCGGGC-------- i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455735 44 + 159171411 GGACCCAGGA------GGTCGGAGAAGCCTCTG-CCTGGGGAGTCCCAGGC-------- i calJac3.chr5 I 1 I 13 s saiBol1.JH378156 15573735 44 + 16356641 GAACCCAGGA------ACTCGGAGAAGCCTCTG-CCTGGGGAGTCCCAGGC-------- i saiBol1.JH378156 I 1 I 13 s cebCap1.NW_016107870v1 423004 44 + 1231380 GGACCCAGGA------GGTCCGAGAAGCCTCTG-CCTGGGGGGTCCCAGGC-------- i cebCap1.NW_016107870v1 I 22 I 78 s aotNan1.NW_018500483v1 1980263 44 + 11732439 GGACCCAGGA------GGTCGCAGAAGCCTCTG-CCTGGGTAGTCCCAGGC-------- i aotNan1.NW_018500483v1 I 1 I 79 s otoGar3.GL873542 22191696 10 + 22939663 ---------------------------CTTCTG--------------AGGC-------- i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133543 55 + 182113224 ----CTTGGACAGCCTTATTGGTGAAACCTTTGCCTTGGAGAATTTCAGGACTATCCAC i mm10.chr2 C 0 C 0 a score=493737.000000 s hg38.chr20_KI270871v1_alt 58498 71 + 58661 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGTAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT s panTro5.chr20 65634651 71 + 66533130 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGTAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393866 71 + 62195757 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGTAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808258 71 - 1017659 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGTAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298759 75 - 110113093 TGGG------------------------TGCCCGGGGGGGGGC--------CCTCCACGGAGACGCCCTCCCTGTAAGCGGCCTGGCATTTCCCT-CTG-GGATCTGCC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015830 69 - 92844088 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-C---AGATCTTCT i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95665086 71 + 96509753 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16115965 71 - 16982598 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-CTG-AGATCTTCT i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2963975 71 - 3785965 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631674 71 - 90373283 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5521197 71 + 6149316 TGGG------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-CTG-GGACCTTCT i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742752 71 - 5823884 TGGA------------------------TGCCC----AGGGGC--------CCTCCACGGAGACACCCTCCCTGCAAGCGGCCTGGCATTTCCCT-CTG-GGATCTTCT i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455792 66 + 159171411 TGCA------------------------TGTCC----AGGGGC--------CCCCATGAGAGA----CCCCCTGCAAGTGGCCAGGCTTTTTCCT-CTG-GGACCATC- i calJac3.chr5 I 13 C 0 s saiBol1.JH378156 15573792 66 + 16356641 TGCA------------------------TGCCC----AGCGGC--------CCCCAGGAGAGA----CCCCCTGCAAGTGGCCTGGCTTTTTCCT-CTG-GGACCATC- i saiBol1.JH378156 I 13 C 0 s otoGar3.GL873542 22191706 49 + 22939663 --------------------------------T----GTGGTC--------TCCCCA---AGACACCCTCCCT------------GCATCTCCCTGTTG-GGGTCTTCT i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133598 99 + 182113224 TGGAacacacacatacacacacacacacTACTC----ATAGGTTGTGATGACCCCCA---GGACATCAT-TCTGCAGGCATCCAGTAATTTCCTT-CTATGGACCTTT- i mm10.chr2 C 0 C 0 e aotNan1.NW_018500483v1 1980307 79 + 11732439 I e cebCap1.NW_016107870v1 423048 78 + 1231380 I a score=335935.000000 s hg38.chr20_KI270871v1_alt 58569 28 + 58661 CCCTACCCCAGAACC--CTCTCATATCACA s panTro5.chr20 65634722 28 + 66533130 CCCTACCCCAGAACC--CTCCCATATCACA i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393937 28 + 62195757 CCCTACCCCAGAACC--CTCCCATATCACA i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808329 28 - 1017659 CCCTACCCCAGAACC--CTCCCATATCACA i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298834 28 - 110113093 CCCTACCCCAGAACC--CTCCCATATCACA i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015899 28 - 92844088 CCCTACCCCAGAACC--CTCCCATATCACA i rheMac8.chr10 C 0 C 0 s macFas5.chr10 95665157 28 + 96509753 CCCTACCCCAGAACC--CTCCCATATCACA i macFas5.chr10 C 0 C 0 s macNem1.NW_012014244v1 16116036 28 - 16982598 CCCTACCCCAGAACC--CTCCCATATCACA i macNem1.NW_012014244v1 C 0 C 0 s cerAty1.NW_012001373v1 2964046 28 - 3785965 CCCTACCCCAGAACC--CTCCCATATCACA i cerAty1.NW_012001373v1 C 0 C 0 s chlSab2.chr2 89631745 28 - 90373283 CCCTACCCCAGAACC--CTCCCATATCACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012104365v1 5521268 28 + 6149316 CCCTACCCCAGAACC--CTCCCACATCACA i manLeu1.NW_012104365v1 C 0 C 0 s colAng1.NW_012114444v1 4742823 28 - 5823884 CCCTACCCCAGAACC--CTCCCATATCACA i colAng1.NW_012114444v1 C 0 C 0 s calJac3.chr5 57455858 28 + 159171411 CTTTACCTCAAAATC--CTCCCAGATCACA i calJac3.chr5 C 0 C 0 s saiBol1.JH378156 15573858 28 + 16356641 CCCTACCCCAAAATC--CTCCCAGATCACA i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 423126 28 + 1231380 CCCTACCCCAAAATC--CTCCCAGATCACA i cebCap1.NW_016107870v1 I 78 C 0 s aotNan1.NW_018500483v1 1980386 28 + 11732439 CCCTACCCCAAAATC--CTCCCAGATCACA i aotNan1.NW_018500483v1 I 79 C 0 s otoGar3.GL873542 22191755 28 + 22939663 CTTCACCCCCAAACC--CGCCCACATCACA i otoGar3.GL873542 C 0 C 0 s mm10.chr2 181133697 30 + 182113224 CCTTGTCCCCAAACCTATTCACATATCACA i mm10.chr2 C 0 N 0 a score=600756.000000 s hg38.chr20_KI270871v1_alt 58597 56 + 58661 GTCCACGGAGGGTCTGCTAAGGGCACA-CTCAAGGCCACACGCAGGCTGGGGCACAC s panTro5.chr20 65634750 56 + 66533130 GTCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACGCAGGCTGGGGCACAT i panTro5.chr20 C 0 C 0 s panPan2.chr20 61393965 56 + 62195757 GTCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACGCAGGCTGGGGCACAT i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808357 56 - 1017659 GTCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACGCAGGCTGGGGCACAC i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298862 56 - 110113093 GTCCACGGAGGGTCTGCTGAGGGCACG-CTCAAGGCCACACGCAGGCTGGGGCACAC i nomLeu3.chr13 C 0 C 0 s rheMac8.chr10 92015927 56 - 92844088 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i rheMac8.chr10 C 0 N 0 s macFas5.chr10 95665185 56 + 96509753 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i macFas5.chr10 C 0 N 0 s macNem1.NW_012014244v1 16116064 56 - 16982598 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i macNem1.NW_012014244v1 C 0 N 0 s cerAty1.NW_012001373v1 2964074 56 - 3785965 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i cerAty1.NW_012001373v1 C 0 N 0 s chlSab2.chr2 89631773 56 - 90373283 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i chlSab2.chr2 C 0 N 0 s manLeu1.NW_012104365v1 5521296 56 + 6149316 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i manLeu1.NW_012104365v1 C 0 N 0 s colAng1.NW_012114444v1 4742851 56 - 5823884 GCCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCACACACACGCTGGGGCACAC i colAng1.NW_012114444v1 C 0 N 0 s calJac3.chr5 57455886 56 + 159171411 CTCCACGGAGGCTCTGCTGAGGGCACA-CTCAGGGGCACACGCATGCTGGGGCACAC i calJac3.chr5 C 0 N 0 s saiBol1.JH378156 15573886 56 + 16356641 CTCCACGGAGGGTCTGCTGAGGGCACA-CTCAAGGCCGCACGCACGCTGGGGCACAC i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 423154 56 + 1231380 CTCCACGGAGGGTCTGGTGAGGACACA-CTCAAGGCCACACGGACGCTGGGGCACAC i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1980414 56 + 11732439 CTCCACGGAGCGTCTGCTGAGGGCACA-CTCAAGGCCACACGCACGCTGGGGCACAC i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22191783 53 + 22939663 TTCCAGGGAGGGTCTGTCCAGAGCATACCCCCAGTGTACTCATA----GTGGCACGC i otoGar3.GL873542 C 0 C 0 a score=20583.000000 s hg38.chr20_KI270871v1_alt 58653 7 + 58661 TCGTGGG s panTro5.chr20 65634806 7 + 66533130 TCGTGGG i panTro5.chr20 C 0 C 0 s panPan2.chr20 61394021 7 + 62195757 TCGTGGG i panPan2.chr20 C 0 C 0 s gorGor5.CYUI01015750v1 808413 7 - 1017659 TCGTGGG i gorGor5.CYUI01015750v1 C 0 C 0 s nomLeu3.chr13 109298918 7 - 110113093 TCGTGGG i nomLeu3.chr13 C 0 C 0 s saiBol1.JH378156 15573942 7 + 16356641 TCGCGGG i saiBol1.JH378156 C 0 C 0 s cebCap1.NW_016107870v1 423210 7 + 1231380 TCGCGGG i cebCap1.NW_016107870v1 C 0 C 0 s aotNan1.NW_018500483v1 1980470 7 + 11732439 TCGCGGG i aotNan1.NW_018500483v1 C 0 C 0 s otoGar3.GL873542 22191836 7 + 22939663 TCCTGGG i otoGar3.GL873542 C 0 N 0 a score=2800.000000 s hg38.chr20_KI270871v1_alt 58660 1 + 58661 G s panTro5.chr20 65634813 1 + 66533130 G i panTro5.chr20 C 0 N 0 s panPan2.chr20 61394028 1 + 62195757 G i panPan2.chr20 C 0 N 0 s gorGor5.CYUI01015750v1 808420 1 - 1017659 G i gorGor5.CYUI01015750v1 C 0 N 0 s nomLeu3.chr13 109298925 1 - 110113093 G i nomLeu3.chr13 C 0 N 0 s saiBol1.JH378156 15573949 1 + 16356641 G i saiBol1.JH378156 C 0 N 0 s cebCap1.NW_016107870v1 423217 1 + 1231380 G i cebCap1.NW_016107870v1 C 0 N 0 s aotNan1.NW_018500483v1 1980477 1 + 11732439 G i aotNan1.NW_018500483v1 C 0 N 0