##maf version=1 scoring=roast.v3.3 a score=538802.000000 s hg38.chr21_GL383578v2_alt 0 995 + 63917 gatcattagtggctactatgagcaactctgtgccaataaattggaaactctagaagaaatggagaaatttgtagatacatacaacctaccaagattgaacttgtgagaaattcaaatcctgaacagaccaataacaagtaacaagaccgaagctggaataaaaagtctcccattaaaaaaaaaaaagccctggacctgacagctttacctctgaattctaccagacatttaaagaagaattaataccaatcccactcaaactcttctcaaagatagaggatgaggaaataattccaaactcatcctatgaggccagtattataatatattaaaaccagacaaaagacacatcagtaaaagaaaactacaggccaatatcactcatgaatattgatgcaaaaatc---aacaaaatagtaggaaattgaatgcaacaatacattagaaagatctttcatcatgaccaagtgagatttatccctgggatgcaaggatagttcatcatacataaatcaatcaatgtgatacattatatcagcagaatgaagaataaaaaccataggatcatttcaattgatgctgaaaaagaatttaataaaattcagcatcccttcatgataaaaattctcaaaaaaactgggaacagaagaaacatacttcaacaacattaaagccgtatatgacagacccaagatagtatcatactgaatagggaaaaactgaaaacctttcctctatgatctggtacacaacaagaattcctaccatcgccactgttattcagcataacactggaagtcctagctagagcaatcagacaggagaaggctataaagaacatccacattgcaaaggaagaagtcaaattatccttgtttatagatgataggatcttatatttggaaaaacgtaaattctccacaggaaaactactggaactgataaaaggaatttagcaaagtttcaagatacaaaatatacaaaccaaaatctgtact s panTro5.chr21 836703 996 + 33445071 gatcattagtggctactatgagcaactctgtgccaataaattggaaactctagaagaaatggagaaatttgtagatacatacaacctaccaagattgaacttgtgagaaattcaaatcctgaacagaccaataacaagtaacaagaccaaagctggaataaaaagtctcccattaaaaaaaaaa--gccctggacctgacagctttacctctgaattctaccagacatttaaagaagaattaataccaatcccactcaaactcttctcaaagatagaggatgaggaaataattccaaactcatcctatgaggccagtattataatatattaaaaccagacaaaagacacatcagtaaaagaaaactacaggccaatatcactcatgaatattgatgcaaaaatcctcaacaaaatagtaggaaattgaatgcaacaatacattagaaagatctttcatcatgaccaagtgagatttatccctgggatgcaaggatagttcatcatacataaatcaatcaatgtgatacattatatcagcagaatgaagaataaaaaccataggatcatttcaattgatgctgaaaaagaatttaataaaattcaacatcgcttcatgataaaaattctcaaaaaaactgggaacagaagaaacatacttcaacaacataaaagccgtatatgacagacccaagatagtatcaaactgaatagggaaaaactgaaaacctttcctctatgatctggtacacaacaagaattcctaccatcgccactgttattcaacataacactggaagtcctagctagagcaatcagacaagagaaggctataaagaacatccacattgcaaaggaagaagtcaaattatccttgtttatagatgataggatcttatatttggaaaaacataaattctccacaggaaaactactggaactgataaaaggaatttagtaaagtttcaagatacaaaatatacaaaccaaaatctgtact i panTro5.chr21 N 0 C 0 s panPan2.chr21 14522086 995 + 46275980 gatcattagtggctactatgagcaattctgcgccaatgaattggaaactctagaagaaatggagaaatttgtagatacatacaacctaccaagattgaacttgtgagaaattcaaatcctgaacagaccaataacaagtaacaagaccgaagctggaataaaaagtctcccattaaaaaaaaa---gccctggacctgacagctttacctctgaattctaccagacatttaaagaagaattaataccaatcccactcaaactcttctcaaagatagaggatgaggaaataattacaaactcatcctatgaggccagtattataatatattaaaaccagacaaaagacacatcagtaaaagaaaactacaggccaatatcactcatgaatattgatgcaaaaatcctcaacaaaatagtaggaaattgaatgcaacaatacattagaaagatctttcatcatgaccaagtgagatttatccctgggatgcaaggatagttcatcatacataaatcaatcaatgtgatacattatatcagcagaatgaagaataaaaaccgtaggatcatttcaattgatgctgaaaaagaatttaataaaattcaacatcccttcatgataaaaattctcaaaaaaactgggaacagaagaaacatacttcaacaacataaaagccgtatatgacagacccaagatagtatcatactgaatagggaaaaactgaaaacctttcctctatgatctggtacacaacaagaattcctaccatcgccactgttattcaacataacactggaagtcctagctagagctatcagacaagagaaggctataaagaacatccacattgcaaaggaagaagtcaaattatccttgtttatagatgataggatcttatatttggaaaaacgtaaattctccacaggaaaactactggaactgataaaaggaatttagtaaagtttcaagatacaaaatatacaaaccaaaatctgtact i panPan2.chr21 N 0 C 0 s gorGor5.CYUI01015003v1 434107 996 - 13858734 gatcattactggctactatgagcaactctgtgccaataaattggaaactctagaagaaacggagaaatttgtagatacatacaacctaccaagattgaacttgtgagaaattcaaatcctgaacagaccagtaacaagtaacaagaccgaagctggaataaaaagtctcccattaaaaaaaaaaa-gccctggacctgacagctttacctccgaattctaccagatatttaaagaataattaataccaatcccactcaaactcttctcacagatagaggatgaggaaataattccaaactcatcctatgaggccagtattataatatattaaaaccagacaaaagacacatcagtaaaagaaaactacaggccaatatcactcatgaatattgatgcaaaaatcctcaacaaaatagtaggaaattgaatgcaacaatacattagaaagatctttcatcatgaccaagtgagatttatccctgggatgcaaggatagttcatcatacatacatcaatcaatgtgatatattatatcagcagaataaagaataaaaaccataggatcatttcaactgatgctgaaaaagaatttaataaaattcaacatctcttcatgataaaaattctc-aaaaaactgggaacagaagaaacatacttcaacaacataaaagctgtatatgacagacccaagataatatcatactgaatagggaaaaactgaaaaccttgcctctatgatctggtacacaacaagaattcctaccatcgccactgttatacaacgtaacactggaagtcctagctagagcaatcagacaagagaaggctataaagaacatccacattgcaaatgaagaagtcaaattatccttgtttatagacgataggatcttatatttggaaaaacgtaaattctccacaggaaaactactggaactgataaaaggaatttagtaaagtttcaagatacaaaatatacaagccaaaatctgtact i gorGor5.CYUI01015003v1 N 0 C 0 a score=161938.000000 s hg38.chr21_GL383578v2_alt 995 192 + 63917 ttttgttttgtttttgagacagggtcttactctgttgcccaggctggagtacagtagccattttggcttactgcagccttgatttcccaggctaaagtgaccctcacaccaccttagcctcccaggcagctgagactacaggtgtgcaccaccatacccagcttttatatatatatgtat--ttttattttatt s panTro5.chr21 837699 183 + 33445071 ttttgttttgtttttgagacagggtcttactctgttgcccaggctggagtacagtagccattttggcttactgcagccttgatttcccaggctaaagtgaccctcacaccacattagcctcctaggcagctgagactacaggtgtgcaccaccatccccagcttttatatatat----------ttattt-att i panTro5.chr21 C 0 C 0 s panPan2.chr21 14523081 194 + 46275980 ttttgttttgtttttgagacagggtcttactctgttgcccaggctggagtacagtagccattttggcttactgcagccttgatttcccaggctaaagtgaccctcacaccaccttagcctcccaggcagctgagactacaggtgtgcaccaccatacccagcttttatatatatattttttattttattttatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 435103 191 - 13858734 ttttgttttgtttttgagacagggtcttactctgttgcccaggctggagtacagtagccattttggcttatggcagccttgatttcccaggctaaagtgaccctcacaccacctcagcctcccaggcagctgagactacaggtgtgcaccaccatacccagcttttatatatatatttt---ttttatttaatt i gorGor5.CYUI01015003v1 C 0 I 15 s nomLeu3.chr25 1561500 189 + 32716333 ttttgttttgtttttgagacaaggtcttactctgttgcccaggctggagtacagtagccattttggcttactgcagccttgatttcccaggctaaagtgaccctcacaccacctcagcctcccaggcagctgagactacaggtgtgcaccaccatacccagcttttatatatgtata-----ctttattttatt i nomLeu3.chr25 N 0 C 0 a score=8190.000000 s hg38.chr21_GL383578v2_alt 1187 15 + 63917 ttattttattttatt s panTro5.chr21 837882 15 + 33445071 ttattttattttatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14523275 15 + 46275980 ttattttattttatt i panPan2.chr21 C 0 C 0 s nomLeu3.chr25 1561689 15 + 32716333 ttattttattttatt i nomLeu3.chr25 C 0 C 0 e gorGor5.CYUI01015003v1 435294 15 - 13858734 I a score=2974756.000000 s hg38.chr21_GL383578v2_alt 1202 3335 + 63917 ttattttat-ttatttttctttgtagagatgagattccaccatgttgcccaggctggtctcaaactcctgaggtcaagtgattcacctgctgtggcctcccaaagtgctaagattacaggtgtgtgccatcatgcctggccaaaatctgtaccatttctacatgccaacagtgaacattatgaaagagaactaaagcaatgcagtcccatttacaatagccacatgtaaagtgaaatagataggaattaaccaaaggaataaaacatttctataatgaaaagtataaaatactgataaaataaatgtaagaggacactgaaaggtggaaaaatagtccatgttcatggattggaagaatcagtattgttgacatgttcatactacctgaaacaatctacagatttaatgcaatatctataaaaatatcaatgacattcttcacagaaatagaaaaaacagtcctaaaatttatacggaacaacaaatacccagaaaatccaaagctatcctgagcaaaaagaacaaaactgggacaattttgttacctgacttcaaattatactacagagctatagtaaccaaaacagcatggtgctgacataaaaacaaacagataagcacatagaccaatggaacagaatagagaacccagaagcaaatttacacacctagagtaagtcactcttgacaaaggtgccaagaacatacactggg-aaaagacagtatcttcaataaattgtcctaggaaaactggatatctgtatgcagaagaataaaactagacccctatctaacaccatt-aaaaaatacaatcaaaatggattaaagacttaaatctaagacctcaaactatgaaactactacaggaaaaatttggagaaaatctccatgacattggtctgggcaaagatttcttgagttgtggtccataagcacagggaaccaaggcaaaaatggagaaataggaaaacattaagttaaaaagcttctgaacagtaaaggatatagtcaacaaagtgaagatacaacccacagaatgggagaaaatatttgcaaattcccaatctgacaaggaattaacaaccagaaaatatatgaagcacaaacaactctataggaaaaaaaaatttaataatgaaaattaagcaaaagatttgaataggcatttc-caaaagaagacatacaaatggcaaacaggcatatgaaaaaacgcttaaggttattgattatcacagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatgactgttattcaaaagacaggcaataacaaatgttgacgaggatgtggagtaaatggaacccttgtacaccattgttggggttgtaaatgagtataatcactatggagagcagtttggaggtttctcagaaaactgaaaattgagttaccacctgatgcagcaatcccactgctgggtatatgcccaaaagaaaggaaatcagtgtattgaagagatatctacactcctgtgttttttgcagtactgtctacaaaggctatgatttggaagcaacctcagtgtctatcaacagatgaatgaataaaaacaatgaagtaatattcagccataaaaatagaatgatatccagtcatttgcaacgacttcaatggaactggagaccattatgttaagtgaaatcagttaggcacagaaagagaaacattgcatgttctgacttatctgtggtatgtaaaaatcaaaacagttaaactcatggacatagagagtagtagaaggatgggttaccagaagctgggaagggtagtggggggttggaggagaggtggggatggttaatgggtacaaaaaaatagtgagaaagaatgaataagaactacaatttgatagcacaaaagggtgactatagtcaataagaccttaattgtacattttaaaataacttaaagagtatatttggattgtttgtaactcaaaagataaatgcttgagaagatgaatgccccatttgccatgatgtgtttatttcacattgcatgcctgtatcaaaacatctcatataacccataaatatatacacctactgtgtacccacaaaaattTT-TTaaaaatcactggtaccggtaaataaatcatcaaataaagaacactgtaatactgtaatgatggagtgtagatcaattttatctccaatataagattagaagatgaaactactagaaatgaccatagctgcaataatttggtaagggatacataacataaaaaatgtaaattttaacataataaatataaagtatgaaaggagattaaaagtatagagtttatgtgattgaacttattaccagcataaaatagactgttataactataaaatgttttatgcaagcctcatggtaaccac--aaaaaaaaaaacaactaaagtagatatacaaatgattaaggaaaaggattacaaaaatagcaacacatgaaatcatcaaatcacaaagaaatatagcaggagaggaagaaacaaagtatatacaaagcaacaagacacaattaacaagtgacagcagtaagttcttaccaactgataattaccttatatgtaaattgattgaattatccaac-aaaacacagaatgaccaaatggtttaaataaaaacacacccaactgtacgcttcctacaagagatttactttaatcttaaagacatacgtaggctcaatgttaaggtatggaaaaatatatttcatgaaaaatgataaccaaaag---------gtggctataattacattagacaaaatagactttaagttaaaaactgtcacaagagacaaagaagaacattatatgataataaaggtgtcaattcatcaagaggatataacaattgtaaataaatatgcccccataagtggagcacctgaatatataaagcaaatcttaacagatctgaaggaagaaatagacagcaatgcaatgacagtaggggacttcaatatcttactatcaacaatggatagatcacccagacagaaaatcaataagggaatattggacttgacatacagtttagaaaaattggacataatagaggtataccacaccttccacccgatattagcagaatgcacattcttctcaagcacacatgaaacattctccaggatagacatgttagccacaaaacaaatgttagcaaatttgtttttt------------------aaagaagaaatttaagaagattgaagtcatgtcaagtgtcttttctgaccatattggtatgtaactgaaatcagtaacaagaggaaaactagaaaattcactgtatcagtcccttttcacactgctataaagata s panTro5.chr21 837897 3357 + 33445071 ttattttat-tcatttttctttgtagagatgagattccaccatgtttcccaggctggtctcaaactcctgaggtcaagtgattcacctgctgtggcctcccaaagtgctaagattacaggtgtgtgccatcatgcctggccaaaatctgtaccatttctacatgccaacagtgaacattatgaaagagaactaaagcaatgcagtcccatttacaatagccacatgtaaagtgaaataaataggaattaaccaaaggaataaaacatttctataatgaaaagtataaaatactgataaaataaatgtaagaggacactgaaaggtggaaaaatagtccatgttcatggattggaagaatcagtattgttgaaatgttcatactacctgaaacaatctacagatttaatgcaatatctataaaaatatcaatgacattcttcacagaaatagaaaaaacagtcctaaaatttatacggaacaacaaatacccagacaatccaaagctatcctgagcaaaaagaacaaaactgggagaattttgttacctgacttcaaattatactacagagctatagtaaccaaaacagcatggtgctgacataaaaacaaacagataagcacatagaccaatggaacagaatagagaacccagaagcaaatttacacacctagagtaagtcactcttgacaaaggtgccaagaacatacactggggaaaagacagtatcttcaataaattgtcctaggaaaactggatatctgtatgcagaagaataaaactagacccctatctaacaccatt-aaaaaatacaatcaaaatggattaaagacttaaacctaagacctcaaactatgaaactactacaggaaaaatttggagaaaatctccatgacattggtctgggcaaagatttcttgagttgtggtccataagcacagggaaccaaggcaaaaatggagaaataggaaaacattaagttgaaaagcttctgaacagtaaaggatacagtcaacaaagtgaagatacaacccacagaatgggagaaaatatttgcaaattcccaatctgacaaggaattaacaaccagaaaatatatgaagcacaaacaactctataggaaaaaaaaatttaataatgaaaattaagcaaaagatttgaataggcatttc-caaaagaagacatacaaatggcaaacaggcatatgaaaaaacgcttaaggttattgattatcacagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatgactgttattcaaaagacaggcaataacaaacgttgacgaggatgtggagtaaatggaacccttgtacactgttgttggggttgtaaatgagtataatcactatggagagcagtttggaggtttctcagaaaactgaaaattgagttaccacctgatgcagcaatcccactgctgcgtatatgcccaaaagaaaggaaatcagtgtattgaagagatatctacactcctgtgttttttgcagtactgtctacaaaggctatgatttggaagcaacctcagtgtctatcaacagatgaatgaataaaaacaatgaagtaatattcagccataaaaatagaatgatatccagtcatttgcaacgacttcaatggaactggagaccattatgttaagtgaaatcagttaggcacagaaagagaaacattgcatgttctgacttatctgtggtatgtaaaaatcaaaacagttaaactcatggacatagagagtagtagaaggatgggttaccagaagctgggaagggtagtggggggttggaggagaggtggggatggttaatgggtacaaaaaaatagtgagaaagaatgaataagacctacaatttgatagcacaaaagggtgactatagtcaataagaccttaattgtacattttaaaataacttaaagagtatatttggattgtttgtaactcaaaagataaatgcttgaggagatgaatgccccatttgccatgatgtgtttatttcacattgcatgcctgtatcaaaacagctcatataacccataaatatatacacctactgtgtacccacaaaaattTT-TAaaaaatcactggtaccggtaaataaatcatcaaataaagaacactgtaatactgtaatgatggagtgtagatcaattttatctccaatataagattaaaagatgaaactactagaaatgaccatagctgcaataatttggtaagggatacataacataaaaaatgtaaattttaacataataaatataaagtatgaaaggagattaaaagtatagagtttatgtgattgaacttattaccagcataaaatagactgttataactataaaatgttttatgcaagcctcatggtaaccaa--aaaaaaaaaaacaactaaagtagatatacaaatgattaaggaaaaggattacaaaaataccaacacatgaaatcatcaaatcacaaagaaatatagcaggagaggaagaaacaaagtatatacaaagcaacaagacacaattaacaagtgacagcagtaagttcttaccaactgataattaccttatatgtaaattgattaaattatccaac-aaaacacagaatgaccaaatggtttaaataaaaacacacccaactgtacgcttcctacaagagatttactttaatcttaaagacgtacgtaggctcactgttaaggtatggaaaaatatatttcatgaaaaatgataaccaaaagatagca-gcgtggctataattacattagacaaaatagactttaagttaaaaactgtcacaagagacaaagaagaacattatatgataataaaggtgtcaattcatcaagaggatataacaattgtaaataaatatgcccccataagtggagcacctgaatatataaag--atccttaacagatctgaaggaagaaatagacagcaatgcaatgacagtaggggacttcaatatcttactatcaacaatggatagatcacccagacagaaaatcaataagggaatattggacttgacatacagtttagaaaaattggacataatagaggtataccacaccttccacccaatattagcagaatgcacattcttctcaagcacacatgaaacattctccaggatagacatgttagccacaaaacaaatgttagcaaatttgttttttt---aagatttgttttttaaagaagaaatttaagaagattgaagtcatgtcaagtgtcttttctgaccataatggtatgtaactgaaatcagtaacaagaggaaaactagaaaattcactgtatcagtcccttttcacactgctacaaagata i panTro5.chr21 C 0 C 0 s panPan2.chr21 14523290 3360 + 46275980 ttattttat-ttatttttctttgtagagatgacattccaccatgttgcccaggctggtctcaaactcctgaggtcaagtgattcacctgctgtggcctcccaaagtgctaagattacaggtgtgtgccatcatgcctggccaaaatctgtaccatttctacatgccaacagtgaacattatgaaagagaactaaagcaatgcagtcccatttacaatagacacatgtaaagtgaaataaataggaattaaccaaaggaataaaacatttctataatgaaaagtataaaatactgataaaataaatgtaagaggacactgaaaggtggaaaagtagtccatgttcatggattggaagaatcagtattgttgaaatgttcatactacctgaaacaatctacagatttaatgcaatatctataaaaatatcaatgacattcttcacagaaatagaaaaaacagtcctaaaatttatacggaacaacaaatacccagaaaatccaaagctatcctgagcaaaaagaacaaaactgggagaattttgttacctgacttcaaattatactacagagctatagtaaccaaaacagcagggtgctgacataaaaacaaacagataagcacatagaccaatggaacagaatagagaacccagaagcaaatttacacacctagagtaagtcactcttgacaaaggtgccaagaacatacactggggaaaagacagtatcttcaataaattgtcctaggaaaactggatatctgtatgcagaagaataaaactagacccctatctaacaccatt-aaaaaatacaatcaaaatggattaaagacttaaacctaagacctcaaactatgaaactactgcaggaaaaatttggagaaaatctccatgacattggtctgggcaaagatttcttgagttgtggttcataagcacagggaaccaaggcaaaaatggagaaataggaaaacattaagttaaaaagcttctgaacagtaaaggatacagtcaacaaagtgaagatacaacccacagaatgggagaaaatatttgcaaattcccaatctgacaaggaattaacaaccagaaaatatatgaagcacaaacaactctatagg-aaaaaaaatttaataatgaaaattaagcaaaagatttgaataggcatttc-caaaagaagacatacaaatggcaaacaggcatatgaaaaaatgcttaaggttattgattatcacagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatgactgttatccaaaagacaggcaataacaaatgttgacaaggatgtggagtaaatggaacccttgtacactgttgttggggttgtaaatgagtataatcactatggagagcagtttggaggtttctcagaaaactgaaaattgagttaccacctgatgcagcaatcccactgctgggtatatgcccaaaagaaaggaaatcagtgtattgaagagatatctacactcctgtgttttttgcagtactgtctacaaaggctatgatttggaagcaacctcagtgtctatcaacagatgaatgaataaaaataatgaagtaatattcagccataaaaatagaatgatatccagtcatttgcaacgacttcaatggaactggagaccattatgttaagtgaaatcagttaggcacagaaagagaaacattgcatgttctgacttatctgtggtatgtaaaaatcaaaacagttaaactcatggacatagagaatagtagaaggatgggttaccagaagctgggaagggtagtgaggggttggaggagaggtggggatggttaatgggtacaaaaaaatagtgagaaagaatgaataagacctacaatttgatagcacaaaagggtgactatagtcaataagaccttaattgtacattttaaaataacttaaagagtatatttggattgtttgtaactcaaaagataaatgcttgaggagatgaatgccccatttgccatgatgtgtttatttcacattgcatgcctgtatcaaaacatctcatataacccataaatatatacacctactgtgtacccacaaaaattTT-TAaaaaatcactggtaccggtaaataaatcatcaaataaagaacactgtaatactgtaatgatggagtgtagatcaattttatctccaatataagattaaaagatgaaactactagaaatgaccatagctgcaataatttggtaagggatacataacataaaaaatgtaaattttaacataataaatataaagtatgaaaggagattaaaagtatagagtttatgtgattgaactcattaccagcataaaatagactgttataactataaaatgttttatggttacctcatggtaaccacaaaaaaaaaaaaacaactaaagtagatgtacaaatgattaaggaaaaggattacaaaaataccaacacatgaaatcatcaaatcacaaagaaatatagcaggagaggaagaaacaaagtatatacaaagcaacaagacacaattaacaagtgacagcagtaagttcctaccaactgataattaccttatatgtaaattgattaaattatccaac-aaaacacagaatgaccaaatggtttaaataaaaacacacccaactgtacgcttcctacaagagatttactttagtcttaaagacatacgtaggctcaatgttaaggtatggaaaaatatatttcatgaaaaatgataaccaaaagatagca-gggtggctataattacattagacaaaatagactttaagttaaaaactgtcacaagagacaaagtagaacattatatgataataaaggtgtcaattcatcaagaggatataacaattgtaaataaatatgcccccataagtggagcacctgaatatataaagcaaatcttaacagatctgaaggaagaaatagacagcaatgcaatgacagtaggggacttcaatatcttactatcaacaatggatagatcacccagacagaaaatcaataagggaatattggacttgacatacagtttagaaaaattggacataatagaggtataccacaccttccacccgatattagcagaatgcacattcttctcaagcacacatgaaacattctccaggatagacatgttagccacaaaacaaatgttagcaaatttgttttttt---aagatttgttttttaaagaagaaatttaagaagattgaagtcatgtcaagtgtcttttctgaccataatggtatgtaactgaaatcagtaacaagaggaaaactagaaaattcactgtatcagtcccttttcacactgctataaagata i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 435309 3354 - 13858734 ttaattaat-ttattt---tttgtagagatgagattccaccatgttgcccaggctggtctcaaactcctgaggtcaagtgattcacctgccgtggcctcccaaagtgctaagattacaggtgtgtgccatcatgcctggccaaaatctgtaccatttctacatgccaacagtgaacattatgaaagagaactaaagcaatgcagtcccatttacagtagccacatgtaaagtgaaataaataggaattaaccaaaggaataaaaagtttctataatgaaaagtataaaatactgataaaataaatgtaagaggacactgaaaggtggaaaaatagtccatgttcatggattggaagaatcagtattgttgaaatgttcatactacctgaaacaatctacagatttaatgcaatatctataaaaataccaatggcattcttcacagaaatagaaaaaacagtcctaaaatttataaggaacaataaatacccagaaaatccaaagttatcctgagcaaaaagaacaaaactgggagaattttattacctgacttcaaattatactacagagctatagtaaccaaaacagcatggtgctgacataaaaacaaacagataagcacatagaccaatggaacagaatagagaacccagaagcaaatttacacacctagagtaagtcatttttgacaaaggtgccaagaacatacactggggaaaagacagtatcttcaataaactgtcctaggaaaactggatatctgtatgcagaagaataaaactagacccctatctaacaccattaaaaaaataaaatcaaaatggattaaagacttaaacctaagacctcaaactgtgaaactactacaggaaaaatttggagaaaatctccatgacattggtctgggcaaagatttcttgagttgtggtgcataagcacagggaaccaaggcaaaaatggagaaatagggaaacattaagttaaaaagcttctgaacagtaaaggatacagtcaacgaagtgaagatacaaccaacagaatgggagaaaatatttgcaaactcccaatctgacaaggaattaacaaccagaaaatatatgaagcacaaacaactctacaggaaaaaaaaatttaataatgaaaattaagcaaaagatttgaataggcatttc-caaaagaagacatacaaatggcaaacaggcatatgaaaaggcgcttaaggttattgattatcacagaaatgcaaatcaaaactacaatgagatatcatctcaccccagttaaaatgactgttattcaaaagacaggcaataacaaatgttgacgaggatgtggagtaagtggaacccttgtacgctgttgttggggatgtaaatgagtataatcactatggagagcagtttggagacttctcagaaaactgaaaattgagttaccacctgatgcagcaatcccactgctgggtatatgcccaaaagaaaggaaatcagtgtattgaagagatatctgcactcctgtgttttttgcagtactgtctacaaaggctatgatttggaagcaacctcagtgtctatcaacagatgaatgaataaaaacaatgaagtaatattcagccataaaaatagaatgctatccagtcatttgcaacgacttcaatggaactggagaccattatgttaagtgaaatcagttaggcacagaaagagaaacattgcatgttcagacttatctgtggtatgtaaaaatcaaaacagttaaactcatggacatagagagtagtagaaggatgggttaccagaagctgggaagggtagtggggggttggaggagaggtggggatggttaatgggtacaaaaaaatagtgagaaagaatgaataagacctacaatttgatggcacaaaagggtgactatagtcaataaaaccttaattgtacattttaaaataacttaaagagtatatttggattgtttgtaactcaaaagataaatgcttgaggagatgaatgccccatttgccatgatgtgtttatttcacattgcatgcctgtatcaaaacatctcatataactcataaatatatacacctactgtgtacccacaaaaattTT-TAaaaaatcactggtaccggtaaataaatcatcaaataaagaacgctgtaatactgtaatgatggtgtgtagatcaattatatctccaatataagattaaaagatgaaactactagaaatgaccatagctgcaataatttggtaagggatacataacataaaaaatgtaaattttaacataatcaatataaagtatgaaaggagattcaaagtatagagtttatgtgattgaacttattaccagcataaaatagactgttataactataaaatgttttatgcaagcctcatggtaaccac----aaaaaaaaacaactaaagtagatatacaaatgattaaggaaaaggattacaaaaataccaacacatgaaatcatcaaatcacaaagaaatatagcaggagaggaagaaacaaagtatatacaaagcaacaagacacaattaacaaatgacagcagtaagttcttaccaactgataattaccttatatgtaaattgattaaattatccaac-aaaacacagaatgaccaaatggtttaaataaaaacacacgcaactatatgcttcctacaagagatttactttaatcttaaagacatacataggctcaatgttaaggtatgg-aaaatatatttcatgaaaaatgataaccaaaagatagca-gggtggctataattacattagacaaaatagactttaagttaaaaactgtcacaagagacaaagaagaacattatatgataataaaggtgtcaattcatcaagaggatataacaattgtaaataaatatgcccccataagtggagcacctgaatatataaagcaaatcttaacagatctgaaggaagaaatagacagcaatgcaatgacagtaggggacttcaatatcttactatcaacaatggatagatcacccagacagaaaatcaataagggaatattggacttgacatacagtttagaaaaattggacataatagaggtataccacaccttccacccgatattagcagaatgcacattcttctcaagcacacatgaaacattctccaggatagacatgttagccacaaaacaaatgttagcaaattcattttttt---aagatttgttttttaaagaagaaatttaagaagattgaagtcatgtcaagtgtcttttctgaccataatggtatgtaactgaaatcagtaacaagaggaaaactggaaaattcactgtatcagtcccttttcacactgctataaagata i gorGor5.CYUI01015003v1 I 15 C 0 s nomLeu3.chr25 1561704 3351 + 32716333 ttattttatgttttttttttttataaagaggagattccaccatgttgcccaggctggcctcaaactcctgaggtcaagtgattcacctgccttggcctcccaaagtgctaagattacaggtgtgtgccatcatgtctggccaaaatctgtaccatttctacatgccaacagtgaacattatgaaagagaactaaagcaatgcagtcccatttacaatagccacatgtaaaattaaatacataggaattaaccaaaggaataaaacatttctataataaaaagtataaagtactgataaaataaatgtaagaggacactgaaaggtggaaaaatagtccatgttcatggattggaagaatcagtattgttgaaatgttcatactacctgaaacaatctacagatttaatgcaatatctataaaaataccaatgacattcttcacagaaatagaaaaaacaatcctaaaatgtatatggaaccacaaatacccagaaaatccaaagctatcctgagcaaaaagaacaaaactgggggaattttattacctgacttcaaattatactacagagctatagtaaccaaaacagcatggtgctgatataaaaacaagcagataggcacatagaccaatggaacagaatagagaacccagaagcaaatttacacacctagagtaagtcatttttgacaaaggtgccaagaacatacactggggaaaagacagtatcttcaataaattgtcctaggaaaactggatatctgtatgcagaagaataaaactagacccctatctaacatgatt-aaaaaa---aatcaaaatggattaaggacttaaacctaagacctcaaactatgaaactactacaagaaaaatttggagaaaatctccatgacattggtctgggcaaagatttcttgagttgtggtccataagcacagggaaccaaggcaaaaatggagaaataggaaaacattaagttaaaaagcttctgaacagtaaaggatacagtcaacaaagtgaagatacaacccacagaatgggagaaaatattcgcaaactcccaatctgacaaggaattaacaaccagaaaatacatgaagcacaaacaactctataggaaacaaaaatttaataatgaaaattaagcaaaagatttgaataggcatttctcaaaagaagacatacaaatggccaacaggcatatgaaaaggcacttaag----tttattatcacagaaatgcaaatcaaaactacaatgagatatcatctcaccacagttaaaatgactgttattcaaaagacaggcaataacaaatgttgacgaggatgtagagtaaacggagcccttgtacactgttgttggggttgtaaattagtataatcactatggagagcagtttggaggtttctcagaaaacagaaaattgagttatcacctgatgcagcaatcccactgctgggtatatgcccgaaagaaaggaaatc--tgtattgaagagatatctacactcctgtgttttttgcagtactgtctacaaaggctatggtttggaagcaaccttagtgtccatcaacagatgaatgaataaaaacaaggaagtactatgcagccataaaaatagaatgatatccagtcatttgcaacaacttcaatggaactggagaccattatgtttagtgaaatcagttaggcacagaaagagaaatattgcatgttctgacttatttgtggtatgcaaaaatcaaaacagttaaactcatggacatagagagtagtagaaggatgggttaccagaagctgggaagggtagtggggggttggaggagaggtggggatggttaatgggtac-aaaaaatagtgagaaagaatgaataagacctacaatttgatagcacaaaagggtgactatagtcaataaaaccttaattgtacattttaaaataacttaaagagtatatttggattgtttgtaactcacaggataaatgcttgaggagatgaatgccccatttgccatgatgtgtttatttcacattgcatgcctgtatcaaaacatctcatgtaacccataaatatatacacctactgtgtacccacaaaaattTTAAAaaaaatcactggtacaggtaaataaatcatcaaataaagaacactgtaatactgtaatgatggtgtgtagatcggttatatctccaatataagattaaaagatgagactactagaaatgaccatagctgcagtaatttggtaagggatacataacataaaaaatgtaaattgtagcataataaatataaagtatgaaaggagattaaaagtatagagtttatgtgattgaacttattaccagcataaaatagactgttataactataaaatgttttatgcaagcctcatggtaaccac--aaaaaaaacaacaactaaagtagatatacagatgattaaggaaaaggattatgaaaatatcaacacataaaatcaccaaatcacaaagaaatacagcaggagaggaagaaacaaagtgtatacaaagcaacaagacacaattaacaaatgacagcagtaagttcttaccaactgataattatcttatatgtaaattgattaaattatccagctgaaagacagagtgaccaaatggtttaaataaaagcacacccgactatatgcttcgtatgagagattaact------ttaaagacatacataggctcagtgttaaggtatggaaaaatatatttcatgaaaaatgataaccaaaagatagcaggggtggctataattacattagacaagatagactttatgttaaaaactgtcacaagagacaaagaagaacattatatgataataaaggtgtcaattcatcaagaggatagaacaattgtaaataaatatgcccccataagtggagcacctgaatatataaagcaaatcttaacagatctgaaggaagaaatagacagcaatgcaatgacagtaggggacttcaatatcttactatcaacaatggatagatcacccagacagaaaatcaataagggaatattggacttgacatacactttagaaaaattggacataatagaggtataccacaccttctacctgatattagcagaatgcagattcttctcaagcacacatgaaacattctccaggatagacatgttagccacaaaacaaatgttagcaaatttgtttttttaagaagatttgttttttaaagaagaaatttaagaagattgaagtcatgtcaagcgtcttttctgaccataatggtatgtaactgaaatcagtaacacgaggaaaactggaaaattcactgtatcagtcccttttcacactgctataaagata i nomLeu3.chr25 C 0 C 0 a score=16305.000000 s hg38.chr21_GL383578v2_alt 4537 16 + 63917 ctacctgagactgtgt s panTro5.chr21 841254 16 + 33445071 ctacctgagactgtgt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14526650 16 + 46275980 ctacctgagactgtgt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 438663 16 - 13858734 ctacctgagactgtgt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1565055 14 + 32716333 ctacctgagac--tgt i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159444295 16 - 192294377 Ctacccaagactggga i macFas5.chr3 N 0 C 0 a score=2892421.000000 s hg38.chr21_GL383578v2_alt 4553 651 + 63917 aatttataaataaagagggtttaactgactta-cagttctacatggctggggaggcctcaggaaacttacaacaatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcaagagcaaaagagcacagagaaaactgccacttataaaaccatc----agatctagtgag-aacttactgtcatgagaacaacctggaggaaacca--cccccatgatcaaatcatcttccatcacttccctcccc-tgac---------atgtgggaattataattc-agattataattccagataagatttgggtggggacacagccagac--catatcattcacaaatatgtggggattaaacagc-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaaaatttgtagaactt-atgagacaaaaaaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagttctg-agagggaagtttataacagtaa-ttgtctacattaagaagtaggaacatctaggccaggcgtggtggctcacgcctataatcctaacactttgggaggc-cgaggtgggcggatcacgaggt---gagatcaagaccatcctgaccaacatggtgaaaccctttctctaccaaaaatacaaaacaaaa s panTro5.chr21 841270 651 + 33445071 aatttataaataaagggggtttaactgactta-cagttccacatggctggggaggcctcaggaaacttacaacaatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcaagagcaaaacagcacagagaaaactgccacttataaaaccatc----atatctagtgag-aacttactgtcatgagaacaacctggaggaaacca--cccccatgatcaaatcatctcccatcacttccctcccc-tgat---------atgtgggaattataattc-agattataattccagataagatttgggtggggacacagccagac--catatcattcacaaatatgtggggattaaacagc-atgcttctgaacaaccagtggttcaaagatgaaatagaaaggaaaatttgtaaaactt-atgagacaaaaaaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagttctg-agagggaagtttataacagtaa-ttttctacattaagaagtaggaagatctaggccagacgtggtggctcacgcctataatcctaacactttgggaggc-cgaggtgggcggatcacgaggt---gagatcaagaccatcctgaccaacatggtgaaaccctttctctaccaaaaatacaaaacaaaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14526666 651 + 46275980 aatttataaataaagggggtttaactgactta-cagttccacatggctggggaggcctcaggaaacttacaacaatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcaaaagcaaaagagcacagagaaaactgccacttataaaaccatc----agatctagtgag-aacttactgtcatgagaacaacctggaggaaacca--cccccatgatcaaatcatctcccatcacttccctcccc-tgat---------atgtgggaattataattc-agattataattccagataagatttgggtggggacacagccagac--catatcattcacaaatatgtggggattaaacagc-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaaaatttgtaaaactt-atgagacaaaaaaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagttctg-agagggaagtttatgacagtaa-ttgtctacattaagaagtaggaagatctaggccaggcatggtggctcacgcctataatcctaacactttgggaggc-cgaggtgggcggatcacgaggt---gagatcaagaccatcctgaccaacatggtgaaaccctttctctaccaaaaatacaaaacaaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 438679 653 - 13858734 aatttataaataaagggggtttaattgactta-cagttccacatggctggggaggcctcaggaaacttacaacaatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcaagagcaaaagagcacagagaaagctgccacttataaaaccatcaaaaagatctagtgag-aacttactgtcatgagaacaacctggaggaaacca--cccccatgatcaaatcatctcccatcacttccctcccc-tgac-----------gtgggaattacaattc-agattataattccagataagatttgggtggggacacagccagac--catatcattcacaaatatgtggggattaaacagc-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaaaatttgtaaaactt-atgagacaaaaaaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagttctg-agagggaagtttataacagtaa-ttgtctacattaagaactaggaagatctaggccaggcgtggtggctcacgcctataatcctaacactttgggaggc-cgaggtgggcggatcacgaggt---gagatcaagaccatcctgaccaacatggtgaaacactttctctaccaaaaatacaaaacaaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1565069 664 + 32716333 aatttataaataaagggggtttaattgactta-cagttccacatggctggggaggcctcaggaaacttacaataatagcagaaggg-aaagcaggcatgtcttacatggtggc-agacaagagcaaaagagcacagggaaaactgccacttataaaaccatc----agatctagtgag-aatgtactgtcatgagaacaacctggaggaaacca--cccccatgatcaaatcatctcccatcacttccctcccc-tgacatgtgggaaatgtgggaattacaattc-agattataattccagataagatttgggtggggacacagccaaac--catatcattcacaaatatgtggggattaaacagc-atgcttctgaacaaccagtggttcaaagatgaaatagaaaggaaaatttgtaaaacttaatgagacaaaaaaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagttctg-agaggaaagtttataacagtaa-ttgtctacattaagaagtaggaagatctaggccaggcacggtggcccacatctataatcctaacactttgggaggc-cgaggtgggcagatcactaggtgaggagatcaagaccatcctggccaacatggtgaaaccctgtctctaccaaaaataaaaaacaaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152635432 651 - 185818997 aatttataaacaaatgaggtttaattgactta-cagttccacatggctggggaggtctcaggaaacttacaataatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcgagagcgaaagagcatagggaaaactgtcacttataaaaccgtc----agatctagtgag-aactcactgtcacaagaacaaactggaggaaagca--cccccatgatccaatcatctcccaccacttccctcccc-ttgc---------atgtgggaattacaattc-agattacaattccagataagatttgggtggggacacagccaact--catatcattcacaaatatgcagagattaaacaac-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaacatttgtaaaactt-gtgcgac----aaagatgaaaacacaacataccaaaaacctaggagacgcagcaaaagcagttcta-agagggaaatttataacaataa-ttgtcttcattaaaacataggaagatctaggccaggcaccgtggctcacacctataatcctaacgctttgggaggcaagaggtggtcgcatcatgaggtcaggagatcaagaccatcctggctaacatggtgaaatcctgtctctactaaaattacaaaaaaaaa i rheMac8.chr3 N 0 C 0 s macFas5.chr3 159444311 650 - 192294377 aatttataaacaaatgaggtttaattgactta-cagttccacatggctggggaggtctcaggaaacttacaataatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcgagagcgaaagagcatagggaaaactgtcacttataaaaccgtc----agatctagtgag-aactcactgtcacaagaacaacctggaggaaagca--cccccatgatccaatcatctcccaccacttccctcccc-ttgc---------atgtgggaattacaattc-agattacaattccagataagatttgggtggggacacagccaact--catatcattcacaaatatgcagagattaaacaac-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaacatttgtaaaactt-gtgagac----aaagatgaaaacacaacataccaaaaacctaggagacgcagcaaaagcagttcta-agagggaaatttataacaataa-ttgtcttcattaaaacataggaagatctaggccaggcaccgtggctcacacctataatcctaacgctttgggaggcaagaggtggtcgcatcatgaggtcaggagatcaagaccatcctggctaacatggtgaaatcctgtctctactaaaattacaaaaaaaa- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5888957 662 + 9440265 aatttataaacaaatgaggtttaattgacttaccagttccacatggctggggagttctcaggaaacttacaataatagcagaagggaaaagcaggcatgtcttacatggtcgcaaggcgagagcgaaagagcatagggaaaactgtcacttataaaaccgtc----agatctagtgagaaactcac-gtcacaagaacaacttggaggaaagcacccccccatgatccaatcatctcccaccactcccgtcccctttgc---------atgtggaaattacaattcaagattacaattccagataagatttgggggggacagcagccaactcacatATCattcacaaatatgcagagattaaacaacaatgcttctgaacaaccaatggttcaaagatgaaatagaaaggaacatttgtaaaactt-gtgagac----aaagatgaaaacacaacataccaaaaacctaggagacgcagcaaaagcagttctacagagggaaatttataacaataatttgtcttcattaaaacgta-gaagatctaggccaggcaccgtggctcacacctataatcctaacgcttgggaggccaagaggtggtcgcatcatgaggtcaggagatcaagaccatcctggctaacatggtgaaatcctgtctctactaaaattacaaaaaaaaa i macNem1.NW_012019910v1 N 0 I 16 s cerAty1.NW_012002954v1 5628758 645 + 21915920 aatttataaacaaatgaggtttaattgactta-cagttccacatggctggggaggtctcaggaaacttacaataatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggcgagagcgaaagagcatagggaaaactgtcacttataaaaccatc----agatctagtgag-aactcactgtcacaagaacaacctggaggaaacca--cccccatgatccaatcatctcccaccacttccctcccc-tcgc---------atgtggg------aattc-agattacaattccagataagatttgggtggggacacagccaact--catatcattcacaaatatgcagagattaaacaac-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaacatttgtaaaactt-atgagac----aaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagatcta-agagggaaatttataacaataa-ttgtcttcattaaaatgtaggaagatctaggccaggcaccgtggctcacatctataatcctaacgctttgggaggcaagaggcggtcgcatcatgaggtcaggagatcaagaccatcctggctaacatggtgaaatcttgtttctactaaaattacaaaaaaaaa i cerAty1.NW_012002954v1 N 0 C 0 s manLeu1.NW_012107264v1 601106 645 + 1337817 aatttataaacaaatgaggtttaattgactta-cagttccacatggctggggaggtctcaggaaacttacaataatagcagaaggg-aaagcaggcatgtcttacatggtgac-aggcgagagcgaaagagcatagggaaaactgtcacttataaaaccatc----agatctagtgag-aactcactgtcacaagaacaacctggaggaaacca--cccccatgatccaatcatctcccaccacttccctcccc-tcgc---------atatggg------aattc-agattacaattccagataagatttgggtggggacacagccaact--catatcattcacaaatatgcagagattaaacaac-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaacatttgtaaaactt-atgagac----aaagatgaaaacacaacataccaaaaacctaggagacgcagcaaaagcagatcta-agagggaaatttataacaataa-ttgtcttcattaaaatgtaggaagatctaggccaggcaccgtggctcacacctataatcctaacgctttgggaggcaagaggcggtcgcatcatgaggtcaggagatcaagaccatcctggctaacatggtgaaatcctgtctctactaaaattacaaaaaaaaa i manLeu1.NW_012107264v1 N 0 C 0 s colAng1.NW_012116933v1 579798 651 - 3237654 aatttataaacaaatgaggtttaattgactta-cagttccacatggctggggaggtctcaagaaacttacaataatagcagaaggg-aaagcaggcatgtcttacatggtggc-aggtgagagcaaaagagcatagggaaaactgtcacttataaaaccatc----agatctagtgag-aactcattgtcacgagaacaacctggaggaaacca--cccccatgatccaatcatctcccaccactttcttcccc-ttgc---------atgtgggaattacaattc-agattacaattccagataagatttgggtggggacacagccaact--catatcattcacaaatatgcagagattaaatagc-atgcttctgaacaaccaatggttcaaagatgaaatagaaaggaacatttgtaaaactt-atgagac----aaagatgaaaacacaacataccaaaaacctaggagatgcagcaaaagcagttcta-agagggaaatttataacaataa-ttgtcttcattaaaaagtaggaagatctaggccaggcgccatggctcacacctataatcccaatgctttgggaggcaagaggccgtcgcatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccctgtctctactaaaattacaaaaaaaaa i colAng1.NW_012116933v1 N 0 C 0 a score=31793.000000 s hg38.chr21_GL383578v2_alt 5204 17 + 63917 ac--ttagccaggcgtggt s panTro5.chr21 841921 17 + 33445071 ac--ttagccaggcgtggt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14527317 17 + 46275980 ac--ttatccaggcgtggt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 439332 17 - 13858734 ac--ttagccaggcgtgga i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1565733 17 + 32716333 aa--ttagccgggcgtggt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152636083 15 - 185818997 ----ttcactgggcatagt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159444961 16 - 192294377 ---attcactgggcatagt i macFas5.chr3 C 0 C 0 s cerAty1.NW_012002954v1 5629403 15 + 21915920 ----ttcactgggcgtagt i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 601751 15 + 1337817 ----ttcactgggcgtagt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 580449 19 - 3237654 aaaaatcactgggagtagt i colAng1.NW_012116933v1 C 0 C 0 e macNem1.NW_012019910v1 5889619 16 + 9440265 I a score=1011840.000000 s hg38.chr21_GL383578v2_alt 5221 241 + 63917 ggcacgcgtctgtagt-cccagctactcaggaggctgaggcaggagaatcgcttgaacctgggaggcggaagttgcagtgagcgaacatagcgccactgcactgcagcctgggcgacagagcaagaatccatctcaaaagaaaaaagg-aaagaaaagtaagatttggaaaaacctaatgttatacctcaaggaactagaagaagaagaacaaactaaacttaaagtaagcatgaaaaagaaa s panTro5.chr21 841938 241 + 33445071 ggcacgcgtctgtagt-cccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagcgaacatagcgctgctgcactgcagcctgggcgacagagcaagaatccatctcaaaagaaaaaagg-aaagaaaagtaagatttggaacaacctaatgttatacctcaaggaactagaagaagaagaacaaactaaacttaaagtaagcatgaaaaagaaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14527334 240 + 46275980 ggcacgcgtctgtagt-cccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagcgaacatagcgccactgcactgcagcctgggcgacagagcaagaatccatctcaaaagaaaaaagg--aagaaaagtaagatttggaacaacctaatgttatacctcaaggaactagaagaagaagaacaaactaaacttaaagtaagcatgaaaaagaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 439349 241 - 13858734 ggcacgcgcctgtagt-cccagctactcaggaggctgaggcaggagaatcgcttgaatccgggaggcggaggttgcagtgagcgaagatagcgccactgcactccagcctgggcgacagagcaagaatccatctcaaaagaaaaaagg-aaagaaaagtaagatttggaacaacctaacgttatacttcaaggaactagaagaagaagaacaaactaaacttaaagtaagcatgaaaaagaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1565750 242 + 32716333 ggcacgcgcctgtagt-cccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagtgaagatagcgccactacactccagcctgggcgacagagcaagaatccatctcaaaagaaaagagaaaaaaaaaagtaagatttcgagcaacctaatgttatacctcaaggaactagaagaagaagaacaaactaaacttaaagtaagcatggaaaagaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152636098 231 - 185818997 ggcacgcacctgtagt-cccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagtcaagatcgtgccactgcactccagcctgagtgacagagcaagaatctgtctcaaaagaaaaaaaa-aag---taagaagatttcaaacaacctaatgttatacctaaggaaac-------agaagaacaaactaaacttaaagtaagcatgaaaaagaaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159444977 231 - 192294377 ggcacgcacctgtagt-cccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagtcaagatcgtgccactgcactccagcctgagtgacagagcaagaatctgtctcaaaagaaaaaaaa-aag---taagaagatttcaaacaacctaatgttatacctaaggaaac-------agaagaacaaactaaacttaaagtaagcatgaaaaagaaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5889635 229 + 9440265 ggcacgcacctgtagtccccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtagtcaaagatcgtgccactgcactccagcctgagtgacagagcaagaatctgtctcaaaagaaaaaaaa-aag------aaagatttcaaacaacctaatgttatacctaaggaaac-------agaagaacaaactaaacttaaagtaagcatgaaaaagaaa i macNem1.NW_012019910v1 I 16 I 37 s cerAty1.NW_012002954v1 5629418 227 + 21915920 ggcacgcacctgtagt-cccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagtcaagatcgtgccactgcactccagcctgagtgacagagcaaaaatctgtctcaaaagaaaaaaaa-agt-------aagatttcaaacaacctaatgttatacctaaggaaac-------agaagaacaaactaaacttaaagtaagcatgaaaaagaaa i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 601766 228 + 1337817 ggcacgcacctgtagt-cccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagtcaagatcgtgccactgcactccagcctgagtgacagagcaaaaatctgtctcaaaagaaaaaaaa-aag------taagatttcaaacaacctaatgttatacctaaggaaac-------agaagaacaaactaaacttaaagtaagcatgagaaagaaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 580468 234 - 3237654 ggcatgcacctgtagt-cccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagtcaagatcgtgtcactgcactccagcctgagcgacagagcaagaatctgtctcaaaagaaaaaaaa-aaaaagtaagaagatttcaaacaacctaatgttatacccaaggaaac-------agaagaacagactaaacttaaagtaagcatgaaaaagaaa i colAng1.NW_012116933v1 C 0 C 0 a score=83141.000000 s hg38.chr21_GL383578v2_alt 5462 26 + 63917 ataatagctatcagagcaaaagtaaa s panTro5.chr21 842179 26 + 33445071 atgatagctatcagagcaaaagtaaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14527574 26 + 46275980 ataatagctatcagagcaaaagtaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 439590 26 - 13858734 ataatagctatcagagcaaaagtaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1565992 26 + 32716333 ataatagatatcagagcaaaagtaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152636329 26 - 185818997 ataagagatatcagagtcaaaaaaaa i rheMac8.chr3 C 0 I 6 s macFas5.chr3 159445208 26 - 192294377 ataagagatatcagagccaaaaaaaa i macFas5.chr3 C 0 I 14 s cerAty1.NW_012002954v1 5629645 26 + 21915920 ataagagatatcagagccaaaaaaaa i cerAty1.NW_012002954v1 C 0 I 11 s manLeu1.NW_012107264v1 601994 26 + 1337817 ataagagatatcagagccaaaaaaaa i manLeu1.NW_012107264v1 C 0 I 9 s colAng1.NW_012116933v1 580702 26 - 3237654 ataatagatatcagagccaaaaaaaa i colAng1.NW_012116933v1 C 0 I 6 e macNem1.NW_012019910v1 5889864 37 + 9440265 I a score=7360259.000000 s hg38.chr21_GL383578v2_alt 5488 1622 + 63917 ccaaaagaatatagaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacataccgttctggactaagccaaaaaaaaaaaaaa-----gggagaagactaaataaatagaatcagaaatgaatgtgaagacattataatagatgccttagaaataaggataattagagacaaatatgagcaattaattatatgccattaaattggataatctgcaga-aaaaaataaatttgtataaaca-tacaacccaccaaaactgaatcaggaaaataatgagagcctaaacagagtaatagcaaataaagagattgatgtggt-----aattaaaaaccttccaacaaagaaaattcctgaatcagatggcgtaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatatataacttgagggaatactttcaaactcattttatgaggccagcattatccttatattaaagtcagacaaaagcgctacaagaaaaaaaaa-------gcttacaagtcaatatctctgatgaccacagttgcaaaaatcctcagtaaaatcgtagcaaaccaaattcaacaacatattgaaaagattatacattatgaccaagtgggatttatccctggtatctaagattggtttaacatattcaaatcaatcaatgcgatatctcacattaacagaatggaagacaaaactcataagattattttagtagatgcagaaaaagcattcgacaaagttcgacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcggacaagaaaaagaaatggaagatatccagattggaa---aagaagtaaaattattctatctgcagatgacatgatcctatatgttgaaaaacct-aaggg------acacacacacacacacacac----agacac----------------------------ttaaaacagatgaattcagtaaatttacaggatacaaaattgacattcaaaaatgag----------ttacatttctttataccagtaatgatc-tatcagaaaaacaaataaaaaagataaagataatcccttttactatagaatcaaaaagaataaaa--tacttagaaataagtttaatcaaaaagatggaaaatctgtacactgaaagctattaaacactaatgaaagaaattaaagacacaaatacatggaaagctatctcatgttcatgggctgaaagaattaattctgttaaaatgtccacattacccaaagaactatagttatcctcaatatccatgggg-gattggttccaggacaccccgtgtggataacaaaatctctggattctcaagtcccttttataaaatgtagtagtatttcacataacctacacaccttttt-----taa-----------tattttaactcatttctagatt---------------ccttataatatctaatacaatgtaaatgacatgaaaatagtatagttgttatactgtatttttaaaatgtcttattttttaatg-tat-tttcttctgaatattttttgatctgtggttggttgaatcttcaagtacagaacccatagatacagtgggctgactatatacagattcaatgcaatgcgtatcaaaattccaatggcattcttcacct s panTro5.chr21 842205 1632 + 33445071 ccaaaagaatatagaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacataccgttctggactaagccaaaaaaaaaaaaaaaaaaagggagaagactaaataaatagaatcagaaatgaatgtgaagacattataatagatgccttagaaataaggataattagagacaaatacgagcaattaattatatgccattaaattggataatctacaga-aaaaaataaatttgtataaaca-tacaacccaccaaaactgaatcaggaaaataatgagagcctaaacagagtaatagcaaataaagagattgatgtggt-----aattaaaaaccttccaacaaagaaaattcctgaatcagatggcgtaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatatataacttgagggaatactttcaaactcattttatgaggccagcattacccttatattaaagtcagacaaaagcgctacaagaaaaaaaaa----aaagcttacaagtcaatatctctgatgaccacagttgcaaaaatcctcagtaaaatcgtagcaaaccaaattcaacaacatattgaaaagattatacattatgaccaagtgggatttatccctggtatctaagattggtttaacatattcaaatcaatcaatgcgatatctcacattaacagaatggaagacaaaactcataagattattttagtagatgcagaaaaagcattcgacaaagttcgatatcctttcttgataaaaactctcaacaaatactacctagagcaatcggacaagaaaaagaaatggaagatatccagattggaa---aagaagtaaaattattctatctgcagatgacatgatcctatatgttgaaaaacct-aaagg------acacacacacacacacacac----acacac--------------------------acttaaaacagatgaattcagtaaatttacaggatacaaaattgacattcaaaaatgag----------ttacatttctttataccagtaatgatc-tatcagaaaaacaaataaaaaagataaagataatcccttttactatagaatcaaaaagaataaaa--tacttagaaataagtttaatcaaaaagatggaaaatctgtacactggaagctattaaacactaatgaaagaaattaaagacacaaatacatggaaagctatctcatgttcatgggctgaaagaattaattctgttaaaatgtccacattacccaaagaactatagTTATcctcaatatccatgggg-gattggttccaggacaccctgtgtggataacaaaatctctggattctcaagtcccttttataaaatgtagtagtatttcacataacctacacaccttttt-----taa-----------tattttaactcatttctagatt---------------ccttataatatctaatacaatgtaaatgacatgaaaatagtatagttgttatactgtatttttaaaatgtcttattttttaatg-tat-tttcttctgaatattttttgatctgtggttggttgaatcttcaagtatagaacccatagattcagtgggctgactatatacagattcaatgcaatgcgtatcaaaattccaatggcattcttcacct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14527600 1626 + 46275980 ccaaaagaatatagaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacataccgttctggactaagccaaaaaaaaaaaaaa----agggagaagactaaataaatagaatcagaaatgaatgtgaagacattataatagatgccttagaaataaggataattagagacaaatacgagcaattaattatatgccattaaattggataatctacaga-aaaaaataaatttgtataaaca-tacaacccaccaaaactgaatcaggaaaataatgagagccgaaacagagtaatagcacataaagagattgatgtggt-----aattaaaaaccttccaacaaagaaaattcctgaatcagatggcgtaatgactgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatatataacttgagggaatactttcaaactcattttatgaggccagcattacccttatattaaagtcaaacaaaagcgctacaagaaaaaaaaa-----aagcttacaagtcaatatctctgatgaccacagttgcaaaaatcctcagtaaaatcgtagcaaaccaaattcaacaacatattgaaaagattatacattatgaccaagtgggatttatccctggtatctaagattggtttaacatatccaaatcaatcaatgcgatatctcacattaacagaatggaagacaaaactcataagattattttagtagatgcagaaaaagcattcgacaaagttcgacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcggacaagaaaaagaaatggaagatatccagattggaa---aagaagtaaaattattctatctgcagatgacatgatcctatatgttgaaaaacctaaaagg------acacacacacacacacacac----agacac----------------------------ttaaaacagatgaattcagtaaatttacaggatacaaaattgacattcaaaaatgag----------ttacatttctttataccagtaatgatc-tatcagaaaaacaaataaaaaagataaagataatcccttttactatagaatcaaaaagaataaaa--tacttagaaataagtttaatcaaaaagatggaaaatctgtacactgaaagctattaaacactaatgaaagaaattcaagacacaaatacatggaaagctatctcatgttcatgggctgaaagaattaattctgttaaaatgtccacattacccaaagaactatagttatcctcaatatccatgggg-gattggttccaggacaccccgtgtggataacaaaatctctggattctcaagtcccttttataaaatgtagtagtatttcacataacctacacaccttttt-----taa-----------tattttaactcatttctagatt---------------ccttataatatctaatacaatgtaaatgacatgaaaatagtatagttgttatactgtatttttaaaatgtcttattttttaatg-tat-tttcttctgaatattttttgatttgtggttggttgaatcttcaagtatagaacccatagatacagtgggctgactatatacagattcaatgcaatgcgtatcaaaattccaatggcattcttcacct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 439616 1653 - 13858734 ccaaaagaatatagaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacataccgttctggactaagccaaaaaaaaaaaaag-------gagaagactaaataaatagaatcagaaatgaatatgaagacattataataggtgccttagaaataaggataattagagacaaatatgagcaattaattatatgccattaaattggataatctacaga-aaaaaataaatttttataaaca-tacaacccaccaaaactgaatcaggaaaataatgagagcctgaacagagtaatagcaaataaagagattgatgtggt-----aattaaaaaccttccaacaaagaaaattcctgaatcagatggcataatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatatataacttgagggaatactttcaaactcattttatgaggccagcattacccttatattaaagtcagacaaaagcgctacaagaaaaaaaaa----aaagcttacaagccaatgtctctgatgaccacagttgcaaaaatcctcagtaaaatcatagcaaaccaaattcaacaacatatggaaaagattatacattatgaccaagtgggatttatccctggtatctaagattggtttaacatattcaaatcaatcaatgcgatatctcacattaacagaatggaagacaaaactcataagattattttagtagatgcagaaaaagcttttgacaaagttcgacatcctttcttgataaaaactctcagcaaatactaccaagagcaatcggacaagaaaaagaaatggaagatatccagattggaa---aagaagtaaaattattctatctgcagatgacatgatcctatatgttgaaaaacct-aaagg------acacacacacacacacacac----acacacacacacacacacacacacacagagacacttaaaacagatgaattcagtaaatttacaggatacaaaattgacattcaaaaatgag----------ttacatttctttataccagtaatgatc-tatcagaaaaacaaataaaaaagataaagataatcccttttactatagaatcaaaaagcatagaaataagttagaaataagtttaaccaaaaagatggaaaatctgtacactgaaagctattaaacactaatgaaagaaattaaacacacaaatacatggaaagctatctcatgttcacgggctgaaagaattaatgctgttaaaatgtccacattacccaaagaactatagTTATcctcaatatccatgggg-gattggttccaggacaccccgtgtggataacaaaatctctggattctcaagtcccttttataaaatgtagtagtatttcacataacctacacaccttttt-----tta-----------tgttttaactcatttctagatt---------------ccttataatatctaatacaatgtaaatgatatgaaaatagtatagttgttatattgtatttttaaaatgtcttattttttaatg-tat-tttcttctgaatattttttgatctgtggttggttgaatcttcaagtatagaacccatagatacagtgggctgactatatacagattcaatgcaatgcgtatcaaaattccaatggcattcttcacct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1566018 1627 + 32716333 ccaaaagaatatagaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacatactgttctggactaagc---aaaaaaaaaaga-------gagaagactaaataaatagaatcagaaatgaatgtgaagacgttacaatagatgccttagaaataaggataattagagacaaatatgagcaattaattatatgccaataaatgggataatctacag--aaaaaataaatttttataaaca-tacaacccaccaaaactgaatcaggaaaataatgagagcctgaacagagcaataacaaataaagagattgacgtggt-----aattaaaaaccttccaacaaagaaaattccaggatcagatggcataatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatatataacttgagggaatactttcaaactcattttatgaggccagcattacccttatattaaagtcagaaaaaagcgctacaagaaaagaaaa-agaaaagcttacaagccaatatctctgatgaccacagttgcaaaaatcctcagtaaaatcgtagcaaaccaaattcaacaacatgtcaaaaagattatacattatgaccaagtgggatttatccctggtatctaagattggtttaacatattcaaatcaatcaatgtgatatctcacattaacagaatggaaggcaaaactcataagattattttagtagatgcaggaaaagcatttgacaaagttcgacatctgttcttgataaaaactctcaacaaatactaccaagagcaatcagacaagaaaaagaaatcaaagacatccagattggaaaagaagaagtaaaattattctgtctgcagatgacatgatcctatatgttgaaaaaccc-aaagg------acacacacacacacacac----------------------------------------ttaaaacagatgaattcagtaaatttgcaggatacaaaattgacattcaaaaatgagttacatttctttacatttctttacaccagtaatgatc-tatctgaaaaacaaataaaaaagataaagataatcccttttactatagcatcaaaaagaataaaa--tacttagaaataagtttaaccaaaacgatggaaaatctgtacactgaaagctattaaacactaatgaaagaaattaaagacacaaatacatgaaaagctatctcatgttcatgggctgaaagaattaatgctgttaaaatgtccacattacccaaaGAACTATAGTTATcctcaatatccatgggg-gattggttccaggacaccccatgtggataacaaagtctctggatgctcaagtcccttttataaaatgtagtagtatttcatataacctacacaccttttt-----tta-----------tattttaactcatttctagatt---------------ccttataatatccaatacactgtaaatgatacgaaaatagtatagttgttatactgtatttttaaaatgtcttattttttaatg-tat-ttttttctgaataccttttgatctgtggttggttgaatcctcaagtgtagaacccatagatacagtgggctgactatatacagattcaatgcaatgcgtatcaaaattccaatggcattcttcacct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152636361 1643 - 185818997 ccaaaagaataacgaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacacactgttctggaccaagcaaaaaaaacaaaaag-------gaaaagactaaataaatagaatcagaaatgaaagtgaagacattacaatagatgcctttgaaataagga----tagagacaactatgaataattaattatatgctaataaattggataatctacaggaaaaaaataaatttatgtaaata-tacaacccaccaaaacggaatcaggaaaataatgaaagcccgaatagagcaataacaaataaagagattgatgtagtaattgaattgaaaaccttccaacaaagaaaattccaggatcagatggcttaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatacataacttgagggaatactttcaatctcattttatgaggccagcattgcccttacattaaagtcagacaaaagcagtgcaagaaaaaaaataaaaaaggcttaccagctaatatctctgatgaccacagttgcaaaaatcctcaataaaatagtagcaaaccaaatgcaacaacatattgaaaagattatacattacaaccaagtgggatttatccctggtatctaagattgacttaacacattcaaatcaatcaatgtgatatctcacattaacagaatgaaagacaaaactcgtaagattattttagtggatgtggaaaaagcatttgacaaagttcgacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcagacaagaaagagaaatcgaagacatccagattggaaaagaagaagtaaaactattctctctgcagacaatatgatcctatatgttgaaaaacct-aaagg---cacacacacacacacaca-acac----acacac----------------------------ttaaaacaaatgaattcagtaaatttgcaggatacaaaattgaaattcaaaattgac----------ttacatttccttataccagtaatgatcttatctgaaaaacaaataaa------aaagataatcccttttactatagcatcaaaaagaataaaa--tatttagaaataagtttaaccaaaaagatggaaaatctgtacaccgaaagctattaaacactaatgaaagaaattaaagacacaaatatatggaaagatacctcatgttcatgggctgaaataattaatactgttaaaatgtccatattacctaaagaactacaTTTGTcctcaatatccgtggggcaattggttccaggacaccccgtgtggataacaaaatctctggatgctcaagtcccttttataaaatggagtagtatttcatataacctacacaccttttt-----tttgtttgtttgtttactttaactcatttctagatt---------------ccttgtaatatctaatacaatgtaaatgatatgaaaagagtatcgttgttatactgtatttttaaaatttcttattttttaatgttatattttttctgaatattttttgatctgtggttggttgaatcttcaagtatagcacccatagatacagcgggctgactTTAtacagattcaatgcaacgcctatcaaaattccaatggcattcttcacct i rheMac8.chr3 I 6 C 0 s macFas5.chr3 159445248 1642 - 192294377 ccaaaagaataacgaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacacactgttctggaccaagcaaaaaaaacaaaaag-------gaaaagactaaataaatagaatcagaaatgaaagtgaagacattacaatagatgcctttgaaataagga----tagagacaaatatgaataattaattatatgctaataaattggataatctacaggaaaaaaataaatttatgtaaata-tacaacccaccaaaacggaatcaggaaaataatgaaagcccgaatagagcaataacaaataaagagattgatgtagtaattgaattgaaaaccttccaacaaagaaaattccaggatcagatggcttaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatacataacttgagggaatactttcaatctcattttatgaggccagcattgcccttacattaaagtcagacaaaagcagtgcaagaaaaaaaataaaaaaggcttaccagccaatatctctgatgaccacagttgcaaaaatcctcaataaaatagtagcaaaccaaatgcaacaacatattgaaaagattatacattacaaccaagtgggatttatccctggtatctaagattgacttaacacattcaaatcaatcaatgtgatatctcacattaacagaatgaaagacaaaacttgtaagattattttagtggatgtggaaaaagcatttgacaaagttcaacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcagacaagaaagagaaatcgaagacatccagattggaaaagaagaagtaaaactattctctctgcagacaatatgatcctatatgttgaaaaacct-aaagg----acacacacacacacacacacac----acacac----------------------------ttaaaacaaatgaattcagtaaatttgcaggatacaaaattgaaattcaaaattgac----------ttacatttccttataccagtaatgatc-tatctgaaaaacaaataaa------aaagataatcccttttactatagcatcaaaaagaataaaa--tatttagaaataagtttaaccaaaaagatggaaaatctgtacaccgaaagctattaaacactaatgaaagaaattaaagacacaaatatatggaaagatacctcatgttcatgggctgaaataattaatactgttaaaatgtccatattacccaaaTAACTACATTTGTcctcaatatccgtggggcaattggttccaggacaccccgtgtggataacaaaatctctggatgctcgagtcccttttataaaaaggagtagtatttcatataacctacacaccttttt-----tttgtttgtttgtttactttaactcatttctagatt---------------ccttgtaatatctaatacaatgtaaatgatatgaaaagagtatcgttgttatactgtatttttAAAATTTCTTATTTTTTAATGTTATAttttttctgaatattttttgatctgtggttggttgaatcttcaagtatagcacccatagatacagcgggctgactTTAtacagattcaatgcaacgcctatcaaaattccaatggcattcttcacct i macFas5.chr3 I 14 C 0 s macNem1.NW_012019910v1 5889901 1651 + 9440265 ccaaaagaataacgaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatacacactgttctggaccaagcaaaaaaaacaaaaag-------gaaaagactaaataaatagaatcagaaatgaaagtgaagacattacaatagatgcctttgaaataagga----tagagacaaatatgaataattaattatatgctaataaattggataatctacaggaaaaaaataaatttatgtaaata-tacaacccaccaaaacggaatcaggaaaataatgaaagcccgaatagagcaataacaaataaagagattgatgtagtaattgaattgaaaaccttccaacaaagaaaattccaggatcagatggcttaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatacataacttgagggaatactttcaatctcattttatgaggccagcattgcccttacattaaagtcagacaaaagcagtgcaagaaaaaaaataaaaaaggcttaccagccaatatctctgatgaccacagttgcaaaaatcctcaataaaatagtagcaaaccaaatgcaacaacacattgaaaagattatacattacaaccaagtgggatttatccctggtatctaagattgacttaacacattcaaatcaatcaatgtgatatctcacattaacagaatgaaagacaaaactcgtaagattattttagtggatgtggaaaaagcatttgacaaaggtcgacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcagacaagaaagagaaatcgaagacatccagattggaaaagaagaagtaaaactattctctctgcagacaatacgatcctatatgttgaaaaacct-aaaggacacacacacacacacacacacacac----acacac----------------------------ttaaaacaaatgaattcagtaaatttgcaggatacaaaattgaaattcaaaattgac----------ttacatttccttataccagtaatgatc-tatctgaaaaacaaataaa------aaagataatcccttttactatagcatcaaaaagaataaaa--tatttagaaataagtttaaccaaaaagatggaaaatctgtacaccgaaagctattaaacactaatgaaagaaattaaagacacaaatatatggaaagatacctcatgttcatgggctgaaataattaatactgttaaaatgtccatattacccaaagaactacaTTTGTcctcaatatccgtggggcaattggttccaggacaccccgtgtggataacaaaatctctggatgctcaagtcccttttataaaatggagtagtatttcatataacctacacacctttttgtttgtttgtttgtttgtttactttaactcatttctagatt---------------ccttgtaatatctaatacaatgtaaatgatatgaaaagagtatcgttgttatactgtatttttaaaatttcttattttttaatgttatattttttctgaatattttttgatctgtggttggttgaatcttcaagtatagcacccatagatacagcgggctgactTTAtacagattcaatgcaacgcctatcaaaattccaatggcattcttcacct i macNem1.NW_012019910v1 I 37 C 0 s cerAty1.NW_012002954v1 5629682 1637 + 21915920 ccaaaagaataacgaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatat--acactgttctggaccaagcaaaaaaaacaaaaag-------gaaaagactaaataaatagaatcagaaatgaaagtgaagacattacaatagatgcctttgaaataagga----tagagacaaatatgaataattaattacatgctaataaattggataatctacagaaaaaaaataaatttatgtaaata-tacaacccaccaaaacggaatcaggaaaataatgaaagcccgaatagagcaataacaaataaagagattgatgtagt-----aattgaaaaccttccaacaaagaaaattccaggatcagatggcttaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatacataacttgagggaatactttcaatctcattttatgaggccagcattgcccttatattaaagtcagacaaaagcagtgcaagaaaaaaaataaaaaaggcttaccagccaatatctctgatgaccacagttgcaaaaatcctcaataaaatagtagcaaaccaaatgcaacaacatattgaaaagattatacattacaaccaagtgggatttatccctggtatctaagattgacttaacacattcaaatcaatcaatgtgatatctcacattaacagaatgaaagacaaaactcataagattattttagtggatgtggaaaaagcatttgacaaagttcgacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcagacaagaaagagaaatcgaagacatccagattggaaaagaagaagtaaaactattctctctgcagacaatatgatcctatatgttgaaaaacct-aaaggacacacacacacacacacacacacacaaatacacac----------------------------tt-----aaatgaattcagtaaatttgcaggatacaaaattgaaattcaaaattgac----------ttacatttctttataccagtaatgatc-tatctgaaaaacaaataaa------aaagataatcccttttactatagcatcaaaaagaataaaa--tatttagaaataagtttaaccaaaaagatggaaaatctgtacaccgaaagctattaaacactaatgaaagaaattaaagacacaaatacatgggaagatacctcatgttcatgggctgaaataattaatactgttaaaatgtccatattacccaaagaactacaTTTGTcctcaatatccgtggggcgattggttccaggacaccccgtgtggataacaaaatctctggatgctcaagtcccttttataaaatggagtagtatttcatataacctacacacctttt------tttgtttgtttgtttactttaactcatttctagatt---------------ccttgtaatatctaacacaatgtaaatgatatgaaaagagtatcgttgttatactgtatttttaaaatttcttattttttaatgttatattttttctgaatattttttgatctgtggttggttgaatcttcaagtatagcacccatagatacagcaggctgactTTAtacagattcaatgcaatgcctatcaaaattccaatggcattcttcacct i cerAty1.NW_012002954v1 I 11 C 0 s manLeu1.NW_012107264v1 602029 1641 + 1337817 ccaaaagaataatgaaatagaaaaatcaataaaactaagagttgatttattgaacaaataaaatatatatacactgttctggaccaagcaaaaaaaacaaaaag-------gaaaagactaaataaatagaatcagaaatgaaagtgaagacattacaatagatgcctttgaaataagga----tagagacaaatatgaataattaattatatgctaataaattggataatctacaggaaaaaaataaatttatgtaaata-tacaacccaccaaaacggaatcaggaaaataatgaaagcccaaatagagcaataacaaataaagagattgatgtagt-----aattgaaaaccttccaacaaagaaaattccaggatcagatggcttaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatacataacttgagggaatactttcaatctcattttatgaggccagcattgcccttatattaaagtcagacaaaagcagtgcaagaaaaaaaataaaaaaggcttaccagccaatatctctgatgaccacagttgcaaaaatcctcaataaaatagtagcaaaccaaatgcaacaacatattgaaaagattatacattacaaccaagtggaatttatccctggtatctaagattgacttaacacattcaaatcaatcaatgtgatatctcacattaacagaatgaaagacaaaactcataagattattttagtggatgtggaaaaagcatttgacaaagttcaacatcctttcttgataaaaactctcaacaaatactaccaagagcaatcagacaagaaagagaaatcgaagacatccagattggaaaagaagaagtaaaactattctctctgcagacaatatgatcctatatgttgaaaaacct-aaaggacacacacacacacacacacacaaat----acacac----------------------------ttaaaacaaatgaattcagtaaatttgcaggatacaaaattgaaattcaaaattgac----------ttacatttctttataccagtaatgatc-tatctgaaaaacaaataaa------aaagataatcccttttactatagcatcaaaaagaataaaa--tatttagaaataagtttaaccaaaaagatggaaaatctgtacaccgaaagctattaaacactaatgaaagaaattaaagacacaaatacatggaaagatacctcatgttcatgggctgaaataattaatactgttaaaatgtccatattacccaaagaactacaTTTGTcctcaatatccgtggggcgattggctccaggacaccccgtgtggataacaaaatctctggatgctcaagtcccttttattaaatggagtagtatttcatataacctacacaccttttt-----tttgtttgtttgtttactttaactcatttctagatt---------------ccttgtaatatctaacacaatgtaaatgatatgaaaagagtatcgttgttatactgtatttttaaaatttcttattttttaatgttatattttttctgaatattttttgatctgtggttggttgaatcttcaagtatagcacccatagatacagcaggctgactTTAtacagattcaatgcaatgcctatcaaaattccaatggcattcttcacct i manLeu1.NW_012107264v1 I 9 C 0 s colAng1.NW_012116933v1 580734 1629 - 3237654 ccaaaagaataacgaaatagaaaaatcaataaaactaagagttgatctattgaacaaataaaatatatacacactgttctggaccaagcaaaaaaaacaaaaag-------gaaaagactaaataaatagaatcagaaatgaaagtgaagacattacaatagatgccttggaaataagga----tagagacaaatatgaataattaattatatgctaataaattggataatctacaag-aaaaaataaagttatgtaaatattacaacccaccaaaatggaattaggaaaataatgaaagcccaaacagagcaataacaaataaagagattgatgtagt-----aattgaaaaccttccaacaaagaaaattccaggatcagatggcttaatggctgaattctagcaaacattgaaaaaattaatatcagttcttctcaaactctttcaaaaaatatataacttgagggaatactttcaatctcattttatgaggccagcattgcccttatattaaagtcagacaaaagcactgcaagaaaaaaaattaaaaaggcttacaagccagtatctctgatgaccacagttgcaaaaatcctcaataaaatagtagcaaaccaaatgcaacaacatattgaaaagattatatattacaaccaagtgggatttatccctggtatctaagattgacttaacacattcaaatcaatcactgtgatacctcacattaatagaatgaaagacaaaactcataagattattttagtggatgtggaaaaagcagttgacaaagttcaacatcctctcttgataagaactctcaacaaatactaccaagagcaatcagacaagaaaaagaaatcgaagacatccagattggaaaagaagaagtaaaactattctctctgcagacaatatgatcctatatgttgaaaaacct-aaagg------acacacacacacacacacac----acacac----------------------------ttaaatcaaattaattcagtaaattttcaggatacaaaattgaaattcaaaattgag----------ttacatttctttataccagtaatgttc-tatctgaaaaaccaataaa------aaagacaatcccttttactatagcatcaaaaagaataaaa--tatttagaaataagtttaaccaaaaagatggaaaatctgtacactgaaagctattaaacactaatgaaaga------------aaatacatggaaagatacctcatgttcatgggctgaaataattaatactgttaaaatgtccatattacccaaagaactacaTTTGTcctcaatatccatggggggattggttccaggacaccccgtgtggataacaaaatctctggatgctcaagtcccttttataaaatggagtagtatttcatatcacctacacacactttt-------------tttttttacttgaactcatttctagattcctgcctcagcacgaccttggaatatctaatacaatgtaaatgatatgaaaagagtatcattgttatactgtatttttaaaatttcttattttttaatgttatattttttctgaat-tttttttatctgtgattggttgaatcttcaagtatagcacccatacatacagtgggctgactTTAtacagattcaatgcaatgcctatcaaaattccaatggcatttttcacct i colAng1.NW_012116933v1 I 6 C 0 a score=8030611.000000 s hg38.chr21_GL383578v2_alt 7110 1428 + 63917 aaatagaaaaatttgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaagaactagattttctgacctgaaattc-tattaataagctataataaaaagagtatgctacttgtataaaagcccatacacaggcc-aatggagtagaatagagaacccagaaataaacccaagcatatatggtcaacaaatttttaacaagggcaccaagaagatacaatgaggaaagaacaatattttccacaaatggtgctgggacaactggatattcacgtgtaaaagactgaaattggacacttattttaaaccatacaaaaaaaaaa-cacactcaaaatggattaaagacttaaacataagactgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatctgtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgggattaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagcctatagattggggaaaatatttgcaaactgtatatctgatgaagggttaatatgcaaaatctgtaaggagttcacacaactcaatagc-aaaaaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacataactaatcatcggggaaatgtaaatcaaaatcacaatgagatactgtgtcacacctgttacaatggttatatcaagaagacaagagaagtgttgacaagggtgtggaggaaaagggagcttttttatactgttggtgggaaggcaaattggaacagccattatagaagacagagtggagtttcctcaaaaaattagaagtagaactacc--ctatgacccagcaattcctcttttgggtatacatctaaaaaaattaaaacaatatgttgaagggatacctgcatctccatgtttgttgcagctttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatgaatagataaagaaaatatataggcatatatgtatgtgtgtgtatttcatacatatat-aaa-------------atacacatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggagaatattatgctaagtgaaacaagccagacatagaaagaaaaatagtacatggtttcacttacatctagaatttaaaaagagttgaatacatagaaacagaattgaatagtggttatcagaggctgaaggatggggaaaaaatgaggagatgtca s panTro5.chr21 843837 1425 + 33445071 aaatagaaaaatttgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaagcactagattttctgacctgaaattc-tattaataagctataataaaaagagtatgctacttgtataaaagcccatacacaggcc-aatggagtagaatagagaacccagaaataaacccaagcatatatggtcaactaatttttaacaagggcaccaagaagacacaatgaggaaagaacaatattttccacaaatggtgctgggacaactggatattcacgtgtaaaagactaaaattggacacttattttaaaccatacaaaaaaaaaa-cacactcaaaatggattaaagacttaaacataagactgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatctgtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgggattaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagcctatagattggggaaaatatttgcaaactgtatatctgatgaagggttaatatgcaaaatctgtaaggagttcacacaactcaatagc-aaaaaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcatcggggaaatgtaaatcaaaatcacaatgagatactgtgtcacacctgttacaatggttatatcaagaagacaagagaagtgttgacaagggtgtggaggaaaagggagcttttttatactgttggtgggaaggcaaattggaacagccattatagaagacagagtggagtttcctcaaaaaattagaagtagaactacc--ctatgacccagcaattcctcttttgggtatacatctaaaaaaattaaaacaatatgttgaagggatacctgcatctccatgtttgttgcagctttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatgaatagataaagaaaatatataggcatatatgtatgtgtgtgtacttcatacatatat-aaa-------------atacacatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggagaatattatgctaagtgaaacaagacagacatagaaagaaaaatagtacatggtttcacttacatctagaatttaaaaagagttgaatacatagaaacagaattgaatagtggttatcagaggctgaaggatggggggaaaatgag---atgtcg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14529226 1424 + 46275980 aaatagaaaaatttgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaagcactagattttctgacctgaaattc-tattaataagctataataaaaagagtatgctacttgtataaaagcccatacacaggcc-aatggagtagaatagagaacccagaaataaacccaagcatatatggtcaacaaatttttaacaagggcaccaagaagacacaatgaggaaagaacaatattttccacaaatggtgctgggacaactggatattcacgtgtaaaagactgaaattggacacttattttaaaccatac-aaaaaaaaa-cacactcaaaatggattaaagacttaaacataagactgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatctgtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgggattaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagtctatagattggggaaaatatttgcaaactgtatatctgatgaagggttaatgtgcaaaatctgtaaggagttcacacaactcaatagc-aaaaaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcatcggggaaatgtaaatcaaaatcacaatgagatactgtgtcacacctgttacaatggttatatcaagaagacaagagaagtgttgacaagggtgtggaggaaaagggagcttttttatactgttggtgggaaggcaaattggaacagccattatagaagacagagtggagtttcctcaaaaaattagaagtagaactacc--ctatgacccagcaattcctcttttgggtatacatctgaaaaaattaaaacaatatgttgaagggatacctgtatctccatgtttgttgcagctttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatgaatagataaagaaaatatataggcatatatgtatgtgtgtgtatttcatacatatat-aaa-------------atacacatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggagaatattatgctaagtgaaacaagccagacatagaaagaaaaatagtacatggtttcacttacatctagaatttaaaaagagttgaatacatagaaacagaattgaatagtggttatcagaggctgaaggatgggggaaaaatgag---atgtcg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 441269 1430 - 13858734 aaatagaaaaatttgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactagattttctgacctgaaattc-tattaataagctataataaaaagagtatgctacttgtataaaagcccatacacaggcc-aatggagtagaatagagaacccagaaataaacccaagcatacacggtcaactaatttttaacaagggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgct-ggacaactggatattcgcatgtaaaagactgaaattggacacttattttaaaccatacaaaaaaaaaaccacactcaaaatggattaaagacttaaacataagactgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatctgtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgggattaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagcctatagattggggaaaatatttgcaaactgtatatctgatgaagggttaatatgcaaaatctttaaggagttcacacaactcaatagc-aaaaaacaagtaatctaattaaaatttggtaaagcaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcatcggggaaatgtaaatcaaaatcacaatgagatactgtgtcacacctgttacaatggttatatcaagaagacaagagaagtgttgacaagggtgtggaggaaaagggagcttttttatactgttggtgggaaggcaaattggaacagctattatagaagacagagtggagttttctcaaaaaattagaagtagaaccttctactatgacccagcaattcctcttttgggtatacatctaaaaaaattaaaacaatatgttgaagggatacctgcatctccatgtttgttgcagctttattcacaatagataaaatatagaaacaatccaaccgcctgtccatagatgaatagataaagaaattatataggcatatatgtatgtgtgtgtatttcatacatatat-aaa-------------atacacatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggagaacattatgctaagtgaaacaagccagacatagaaagaaaaatagtacatggtttcacttacatctagaatttaaaaagagttgaatacgtagaaacagaattgaatagtggttatcagaggccgaaggatggggaaaaaatgaggagatgtcg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1567645 1418 + 32716333 aaatagaaacatttatatggaaccaccaaagaccccaagtagccaaagcaatgttgagaaagaaaaacaaagtttgaggcactagattttctgacctgaaattc-tattactaagctataataaaaagagtatgctactggtataaaagccaatacacaggcc-aatggaatagaatagagaacccagaaataagcccaagcatatatggtcaactaacttttaa---------caagaagacacaatgaggaaagaacaatattttccataaatggtgctggggcaactggatattcacatgtaaaagactgaaattggacacttattttaaaccatacaaaaaaaaac---cactgaaaatggattaaagacttaaacataaggctgtaaactgcaaaactccaagaaaaacacatgaggaaaaagcttcttgacatccgtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgggactaagcaaaaacagacaaatgggactacgtcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagcctatgaattggggaaaatattcgcaaactgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagcaaaaaaacaagtaatctaattaaaatttggtagagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcatcggggaaatgtaaatcaaaatcacaatgagatactgtgtcacacctgttatgatggttatatcaagaaggcaagagaagtgttgacaagggtgtggaggaaaagggagcttttttatactgttggtgggaaggtaaattggaacagctattatagaagacagagtggagtttcctcaaaaaattagaagtagaactacc--ctatgatccagcaattcctcttttgggtatacatccaaaagaattaaaacaatatgttgaagagatatctgcatttccatgtttgttggagctttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatgaatagataaagaaatgatataggtatatatgtaagtgtgtgtattttatacatatat-aaa-------------atacacatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggagaacattatgctaagtgaaacaagccagacatagaaagaaaaatagcacatggtttcacttacatctagaatttaaaaatagttgaatacatagaaacagaattgaatagtggttatcagaggctgaaggatggggaaaaaatgaggagatgtat i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152638004 1420 - 185818997 aaatagaaaaaattgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactaggttttctgacctgaaatta-tattactaagctataataaaaagagtatgctacttgtatagaaaccaatacacaggcc-aatagaatagaatagagaacccataaataaacccaaacatatatggtcaactaatttttaataaaggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgctgagacaact-gatattcacatgtaaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactgaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaagaaaataatcaaccaaatgaaaaagcctatggattggggaaaatatttgcaaattgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagc-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacgtcactaatcgtcggagaaatgtaaatcaaaatcaccgtgagatactgtgtcacacctgttacagtggttatatcaggaagacaagagaagtattgacaagggtgtggaggaaaagggagctttttcatactgttggtgggaaggtaaattggaacagccattatagaagacagtgtggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctctttt-ggtatacatccaaaaaaattaaaacaatatgtttaagagatatctgcacctccatgtttgttgcagttttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatga----ataaagaaattatataggtatatgtgtgtgtgtgtgtattttatatatatat-aatatacatatctc--atatatatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagacatagaaagaaaaatagtgcatggtttcacttacatccagaatttaaaaacagttgaatacatagaaacagaatcgaatagtggttaccagagcctggaggatggggaaataatgaggagatgTAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159446890 1421 - 192294377 aaatagaaaaaattgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactaggttttctgacctgaaatta-tattactaagctataataaaaagagtatgctacttgtatagaaaccaatacacaggccaaatagaatagaatagagaacccataaataaacccaaacatatatggtcaactaatttttaataaaggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgctgagacaact-gatattcacatgtaaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactgaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaagaaaataatcaaccaaatgaaaaagcctatggattggggaaaatatttgcaaattgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagc-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcgtcggagaaatgtaaatcaaaatcaccgtgagatactgtgtcacacctgttacagtggttatatcaggaagacaagagaagtattgacaagggtgtggaggaaaagggagctttttcatactgttggtgggaaggtaaattggaacagccattatagaagacagtgtggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctctttt-ggtatacatccaaaaaaattaaaacaatatgtttaagagatatctgcacctccatgtttgttgcagttttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatga----ataaagaaattatataggtatatGTGTGTGTGTGTGTATTTtatatatatat-aatatacatatCTC--Atatatatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagacatagaaagaaaaatagtgcatggtttcacttacatccagaatttaaaaacagttgaatacatagaaacagaatcgaatagtggttaccagagcctggaggatggggaaataatgaggagatgtag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5891552 1419 + 9440265 aaatagaaaaaattgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactaggttttctgacctgaaatta-tattactaagctataataaaaagagtatgctacttgtatagaaaccaatacacaggcc-aatagaatagaatagagaacccataaataaacccaaacatatatgatcaactaatttttaataaaggcaccaagaaaacacaatgaggaaagaacaatattttccataaatggtgctgagacaact-gatattcacatgtaaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactgaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacacataaggaaaaagattcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaagaaaataatcaaccaaatgaaaaagcctatggattggggaaaatatttgcaaattgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagc-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcgtcggagaaatgtaaatcaaaatcaccgtgagatactgtgtcacacctgttacagtggttatatcaggaagacaagagaagtattgacaagggtgtggaggaaaagggagctttttcatactgttggtgggaaggtaaattggaacagccattatagaagacagtgtggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctctttt-ggtatacatccaaaaaaattaaaacaatatgtttaagagatatctgcacctccatgtttgttgcagttttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatga----ataaagaaattatataggtatatgtgtgtgtgtgtgta-tttatatatatat-aatatacatatctc--atatatatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagacatagaaagaaaaatagtgcatggtttcacttacatccagaatttaaaaacagttgaatacatagaaacagaatcgaatagtggttaccagagcctggaggatggggaaataatgaggagatgtag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5631319 1418 + 21915920 aaatagaaaaaattgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactaggttttctgacctgaaatta-tattactaagctataataaaaagagtatgctacttgtatagaaaccaatacacaggcc-aatagaatagaatagagaacccataaatgaacccaaacatatatggtcaactaatttttaataaaggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgctgagacaact-gatattcacatgtaaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactgaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaagaaaataatcaaccaaatgaaaaagcctatggattggggaaaatatttgcaaattgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagc-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttttccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcgtcggagaaatgtaaatcaaaatcacagtgagatactgtgtcacacctgttacagtggttatatcaggaagacaagagaagtattgacaagggtgtggaggaaaagggagctttttcatactgttggtgggaaggtaaattggaacagccattatagaagacagtgtggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctctttt-ggtatacatccaaaaaaattaaaacaatatgttgaagagatatctgcacctccatgtttgtggcagttttattcacaatagataaaatatagaaacaatctgtctgtctgtccatagatga----ataaagaaattatataggtatatgtgtgtgtgtgtgtattttatatatatat-aatatacatatctc----atatatatatatgaatattattcaatcttaaagaaggagattcagccacttgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagacatagaaagaaaaatagtgcatggtttcacttacatccagaatttaaaaacagttgaatacatagaaacagaatcgaatagtggttaccagagcctggaggatggggaaataatgaggagatgTAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12275794 1422 - 90373283 aaaTAGAaaaaattgcatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactagattttctgacctgaaattattattactaagctataataaaaagagtatgctacttgtataaaaaccaatacacaggcc-aatggaatagaatagagaacccataaataaacccaaacatatatggtcaactaatttttaacaagggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgctgagacaactggatattcacatgtaaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactcaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagcctatggattggggaaaatatttgcaagttgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagc-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcatcagggaaatgtaaatcaaaatcacagtgagatactgtgtcacatctgttacaatggttatatcaggaagacaagagaagtgttgacaagggtgtggaggaaaagggagctttttcatcctgttggtgggaaggtaaattggaacagccattatagaagacagtgtggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctcttttgggtatacatccaaaaaaattaaaacaatatgttgaagagatatctgcacctccatgtttgttgcagctttattcacaatagataaaatatagaaacaatccaactatctgtccatagatga----ataaagaaattatataggtatatatGTGTGTGTGtattatatatatatatataaatatatgtatCTC----ACatatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagacgtagaaagaaaaatagtgcatggtttcacttacatccagaatttaaaaacagttgaatacatagaaacagaatcaaatagtggttaccagagcctggaggatggggaaataatgaggagatgtag i chlSab2.chr2 N 0 C 0 s manLeu1.NW_012107264v1 603670 1422 + 1337817 aaatagaaaaaattgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagaaaaacaaagttggaggcactaggttttctgacctgaaatta-tattactaagctataataaaaagagtatgctacttgtatagaaaccaatacacaggcc-aatagaatagaatagagaacccataaatgaacccaaacatatatggtcaactaatttttaataaaggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgctgagacaact-gatattcacatgtgaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactgaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacacataaggaaaaagcttcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaagaaaataatcaaccaaatgaaaaagcctatggattggggaaaatatttgcaaattgtatatctgatgaagggttaatatgcaaaatctataaggagttcacacaactcaatagc-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtaaaaatgtccaccaggcatatgaaaaggtgctcaacatcactaatcgtcggagaaatgtaaatcaaaatcacagtgagatactgtgtcacacctgttacagtggttatatcaggaagacaagagaagtattgacaagggtgtggaggaaaagggagctttttcatactgtgggtgggaaggtaaattgaaacagccattatagaagacagtatggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctctttt-ggtatacatccaaaaaaattaaaacaatatgttgaagagatatctgcacctccatgtttgtggcagttttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatga----ataaagaaattatataggtatatgtgtgtgtgtgtgtattttatatatatat-aatatacatatctcatatatatatatatatgaatattattcaatcttaaagaaggagattcagccacttgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagacatagaaagaaaaatagtgcatggtttcacttacatccagaatttaaaaacagttgaatacatagaaacagaatcgaatagtggttaccagagcctggaggatggggaaataatgaggagatgtag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 582363 1419 - 3237654 aaatagaaaaaattgtatggaaccaccaaagaccccaaatagccaaagcaatgttgagaaagagaaacaaagttggaggcactagattttctgacctgaaatta-tattactaagctataataaaaagagtatgctgcttgtataaaaaccaatacacaggcc-aatggaatagaatagagaacccataaataaacccaaacatatatggtcaactaatttttaacaagggcaccaagaagacacaatgaggaaagaacaatattttccataaatggtgctgagacaactggatattcacatgtaaaagactgaaattggatgctcattttaaaccatacaaaaaataaa-aacactcaaaatggattaaaga-------------ctgtaaactgcaaaactccaagaaaaacatgtaaggaaaaagcttcttgacatcagtcttgtcaataagtttttagatatcacagcaaaagctcaggcaacaaaaacaaaaataaaccagtgagactaagcaaaaacagacaaatgggactacatcaaactaaaaatattctgcacagcaaaggaaataatcaacaaaatgaaaaagcctatggattgggggaagtgtttgcaaattgtatatctgatgaagggttaatatgcaaaatctataaggagctcacacaactcaatagt-aaagaacaagtaatctaattaaaatttggtaaagtaccccaataggcatttctccaaagaagatgtacaaatgtccactaggcatatgaaaaggtgctcaatgtcactaattatcagggaaatgtaaatcaaaatcacagtgagatactgtgtcacacctgttacagtggttatatcaggaagacaagagaagtgttgacaagggtgtggaggaaaagggagctttttcatactgttggtgggaaggtaaattggaaaagccattatagaagacagtgtggagttccatcaaaaaattagaagtagaactacc--ctatgacccagcaattcctcttttgggtatacatccaaaaaaattaaaacaatatgttgaagagatatcttcacctccatgtttgttgcagctttattcacaatagataaaatatagaaacaatccaactgtctgtccatagatga----ataaagaaattatatagatatatgtgtgtgtat-tata---tatatatacataaatatatatctctc--atatatatatatatgaatattattcaatcttaaagaaggagattcagccaattgtaacagcatggatgaagttggaggacattatgctaagtgaaacaagccagatatagaaagaaaaatagtgcatggtttcacttacatccagaatttaagaacagttgaatacatagaaacagaatcgaatagtggttaccagagcctggaggatggggaaataatgaggagatgtag i colAng1.NW_012116933v1 C 0 C 0 a score=2355638.000000 s hg38.chr21_GL383578v2_alt 8538 393 + 63917 gtcaaagggtTTCAGTGTTGca-------------gtatctcagaatgtaactgtatttggctacaggcctttgaatagatgattaagtt-aaataaggctgttagggtggtccctaattcaatctgaccagtgcccttgtaataagagggaatttggacacataaagagacaccaggaatgcacaagcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacttgctaatctcttaatcttggacttctagtctttagggtgatgag------------------------aaactatatctctgttgtttaatccacc-agtctgtggtattttgttatggcagccatagcaa------actaTTAGTTAGACAAGAACA s panTro5.chr21 845262 393 + 33445071 gtcaaagggtTTCAGTGTTGca-------------gcatctcagaatgtaactgtatttggctacaggcctttgaatagatgattaagtt-aaataaggctgttagggtggtccgtaattcaatctgaccagtgcccttgtaataagagggaatttggacacataaagagacaccaggaatgcacaagcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacttgctaatctcttaatcttggacttctagtctttaggatgatgag------------------------aaactatatctctgttgtttaatccacc-agtctgtggtattttgttatggcagccatagcaa------actaTTAGTTAGACAAGAACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14530650 393 + 46275980 gtcaaagggtTTCAGTGTTGca-------------gtatctcagaatgtaactgtatttggctacaggcctttgaatagatgattaagtt-aaataaggctgttagggtggtccctaattcaatctgaccagtgcccttgtaataagaaggaatttggacacataaagagacaccaggaatgcacaagcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacttgctaatctcttaatcttggacttctagtctttaggatgatgag------------------------aaactatatctctgttgtttaatccacc-agtctgtggtattttgttatggcagccatagcaa------actaTTAGTTAGACAAGAACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 442699 393 - 13858734 gtcaaagggtTTCAGTGTTGca-------------gtatctcagaatgtaactgtatttggctacaggcctttaaatagatgattaagtt-aaataaggctgttagggtagtccctaattcaatctgaccagtgcccttgtaataagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacttgctaatctcttaatcttggacttctaggctttaggatgatgag------------------------aaactatatctctgttgtttaatccacc-agtctgtggtattttgttatggcagccatagcaa------actaTTAGTTAGACAAGAACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1569063 393 + 32716333 gtcaaagggtTTCAGTGTTGcg-------------gtatctcagaatgtaactgtatttggctataggcctttaaatagatgattaactt-aaataaggttgttagggtggtccctaattcaatctgaccagtgtccttataataagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacttgctaacatcttaatcttggacttctggtctttaggatgatgat------------------------aaactatatctctgttgtttaatccacc-aggctgtggtattttgttatggcagccatagcaa------actaTTAGTTAGACAAGAACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152639424 390 - 185818997 GTCAAA-GGCTTCAATGTTGca-------------gtgtctcagaatgtaactgtatctggctataggccttcaaatagaagattaagtt-aaataagcatgttagggtggtccctaattcaatctgaccaatgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaa-ctgctgacatcttaatctcggacttctagcctttaggatggtgag------------------------aaaatatatctctgttgtttaatccacc-aatctg-agtattttgttatggctgccctagcaa------actaTTAGGTAGACAAGAACA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159448311 390 - 192294377 gtcaaa-ggcttcaatgttGca-------------gtgtctcagaatgtaactgtatctggctataggccttcaaatagaagattaagtt-aaataagcatgttagggtggtccctaattcaatctgaccaatgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaa-ctgctgacatcttaatctcggacttctagcctttaggatggtgag------------------------aaaatatatctctgttgtttaatccacc-aatctg-agtattttgttatggctgccctagcaa------actaTTAGGTAGACAAGAACA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5892971 390 + 9440265 gtcaaa-ggCTTCAATGTTGca-------------gtgtctcagaatgtaactgtatctggctataggccttcaaatagaagattaagtt-aaataaggatgttagggtggtccctaattcaatctgaccaatgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaa-ctgctgacatcttaatctcggacttctagcctttaggatggtgag------------------------aaaatatatctctgttgtttaatccacc-aatctg-agtattttgttatggctgccctagcaa------actaTTAGGTAGACAAGAACA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5632737 390 + 21915920 GTCAAA-GGCTTCAATGTTGca-------------gtgtctcagaatataactgtatctggctataggccttcaaatagaagattaagtt-aaataagcatgttagggtggtccctaattcaatctgaccaatgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaactaaa-ctgctgacatctttatctcggacttctagcctttagggtggtgag------------------------aaaatacatctctgttgtttaatccacc-aatctg-agtattttgttatggctgccctagcaa------actaTTAGGTAGACAAGAACA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12277216 391 - 90373283 gtcaaa-ggtttcaatgttGca-------------gtgtctcagaatgtaactgtatctggctataggcctttaaatagaagattaagtt-aaataaacatgttagggtggtccctaattcaatctgaccagtgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacctgctgacattttaatcttggacttctagcctttaggatggtgag------------------------aaaatatatctctgttgtttaatccacc-aatctg-cgtattttgttatggctgccctagcag------actaTTAGGTAGACAAGAGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 605092 390 + 1337817 gtcaaa-ggcttcaatgttGca-------------gtgtctcagaatgtaactgtatctggctataggccttcaaatagaagattaagtt-aaataagcatgttagggtggtccctaattcaatctgaccaatgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgcacagagtaaagtccatgt-aatggcacagtgaaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaa-ctgctgacatcttaatctcggacttctagcctttaggatggtgag------------------------aaaatacacctctgttgtttaatccacc-aatctg-agtattttgttatggctgccctagcaa------actaTTAGGTAGACAAGAACA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 583782 390 - 3237654 gtcaaa-ggtttcaatgttGca-------------gtgtctcagaatgtaactgtatctggctatcggccttcaaatggaagattaagtt-aaataagcatgttagggtggtccctaatttaatctgaccagtgtccttatattaagagggaatttggacacataaagagacaccaggaatgcacatgtacagagtaaagtccatgt-aatggcacagtggaaaggtgaccatct-caagccaaggagagaggactcttttggcctcagaagaaaccaaacctgctgacatcttaatcttggacttccagcctttaggatggtgag-------------------------aaatatatctctgttgtttaatccacc-aatctg-agtattttgttatggctgccctagcaa------actaTTAGGTAGACAAGAACA i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11415988 426 + 39895921 gtcaaa--actccagtgttggaacactaacccaaggtacctcaggatgtgactgtatttggaggcaagcttttagagagatgattaaattaaaaggaggccattaaggtgtgtcctaatccattctgactggtttccttatgagaagaggaaatcaggacactc--agagacaccagggatgcatgagcatggaaaaaagaccatgtgaaggacatagcaagaaggtggccatctgcaaaccaaggtgaga----------ggtctcagaagaaaccaaacctgccatcaccttgatcttggtcttttacccttccgaacagttggaaattaaattggaaattaagttggaaattaaatttctgttattgtagcaacctagtctgtggcattttgttatggcagccctagcaatgtaatacaATAATACTAATAATATCA i canFam3.chr31 N 0 C 0 a score=4501223.000000 s hg38.chr21_GL383578v2_alt 8931 714 + 63917 CTGCTAATGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTT--------------AAAAGATTGCTGCTGTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATTATCCTGG---TGTGGTCTTAAGGAAATTTTTAGTGTTCTCATTATCTTTCTTCCTT--TATTTCT-----------AGATACTTACTATAAGTTTTCTAGTAGCAAGATTGGAATCCCATCAGTTGACAGTGTATGAGCCTAATATTATACATTGTAAATCATT-----CTCACTAGCATTTTGTGTATAC----TTATTAATATATTTGTTATTTCAATTCAGAATCATTGCTTA-------------AGTT--TTCTGATCTTTATAGTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTATGATTAAACTCTTCAGACATTACCATTTTGTTTCTACAATGTCGATATCTTCATGTTTCCAGTATCTTCACTATCAGATCCTTGCCATATCATCCTTTTCACATAATTATGATAAATTATAAAAATCTCACTGTATTTGGTATTATTGTAAGTTAAATGATATGTTCAGGATTTGCA----AAGGTATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagataaatgattaattctaaaactgaggcagaaaatgtacaagctgagcccggaccattttttagtg-cagaaagcaaataaatgcttacaaacaaacaaacaaaacccatattgat s panTro5.chr21 845655 716 + 33445071 CTGCTAATGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTT--------------AAAAGATTGCTGCTGTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATTATCGTGG---TGTGGTCTTAAGGAAATTTTTAGTGTTCTCATTATCTTTCTTCCTT--TATTTCT-----------AGATACTTACTACAAGTTTTCTAGTAGCAAGATTGGAATCCCATCAGTTGACAGTGTATGAGCCTAATATTATACATTGTAAATCATT-----CTCACTAGCATTTTGTGTATAC----TTATTAATATATTTGTTATTTCAACTCAGAATCATTGCTTA-------------AGTTCTTTCTGATCTTTATAGTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTATGATTAAACTCTTCAGACATTACCATTTTGTTTCTACAATGTCGATATCTTCATGTTTCCAGTATCTTCACTATCAGATCCTTGCCATATCATCCTTTTCACATAATTATGATAAATTATAAAAATCTCACTGTATTTGGTATTATTGTAAGTTAAATGATATGTTCAGGATTTGCA----AAGGTATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagataaatgattaattctaaaacggaggcagaaaatgtacaagctgagcccggaccattttttagtg-cagaaagcaaataaatgcttacaaacaaacaaacaaaacccaaattgat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14531043 713 + 46275980 CTGCTAATGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTT--------------AAAAGATTGCTGCTGTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATTATCCTGG---TGTGGTCTTAAGGAAATTTTTAGTGTTCTCATTATCTTTCTTCCTT--TATTTCT-----------AGATACTTACTATAAGTTTTCTAGTAGCAAGATTGGAATCCCATCAGTTGACAGTGTATGAGCC---TATTATACATTGTAAATCATT-----CTCACTAGCATTTTGTGTATAC----TTATTAATATATTTGTTATTTCAACTCAGAATCATTGCTTA-------------AGTTCTTTCTGATCTTTATAGTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTATGATTAAACTCTTCAGACATTACCATTTTGTTTCTACAATGTCGATATCTTCATGTTTCCAGTATCTTCACTATCAGATCCTTGCCATATCATCCTTTTCACATAATTATGATAAATTATAAAAATCTCACTGTATTTGGTATTATTGTAAGTTAAATGATATGTTCAGGATTTGCA----AAGGTATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagataaatgattaattctaaaactgaggcagaaaatgtacaagctgagcccggaccattttttagtg-cagaaagcaaataaatgcttacaaacaaacaaacaaaacccatattgat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 443092 709 - 13858734 CTGCTAATGTCTTTTCTAGACCTAAAATTCTACTGTCGTTTTT--------------AAAAGATTGCTGCTGTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATTATCCTGG---GGTGGTCTTAAGGAAATTTTTAATGTTCTCATTATCTTTCTTCCTT--TATTTCT-----------AGA----TACTATAAGTTTTCTAGTAGCAAGATTGGAATCCCATTAGTTGACAGTGTATGAGCC---TAATATACATTATAAATCATT-----CTCACTAGCATTTTGTGTATACTTCATTATTAATATATTTGTTATTTCAACTCAGAATCATTGCTTT-------------AGTTCTTTCTGATCTTTATAGTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTATGATTTAATTCTTCAGACATTACCATTTTGTTTCTACAATGTCGATGTCTTCATGTTTCCAGTATCTTCACTATCAGATCCTTGCCATATCATCCTTTTCACATAATTACGATAAATTATAAAAATCTCACTGTATTTGGTATTATTGTAAGTTAAATGATATTTTCAGGATTTGCA----AACGTATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgattaattctaaaactgaggcagaaaatgtacaagctgagcctggaccattttttagtg-cagaaagcaaataaatgctt----acaaacaaacaaaacccgtattgat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1569456 717 + 32716333 CTGCTAATGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTT--------------AAAAGATTGCTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCTGATAATTCCCATTATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTATCTTTCTTCCTT--TATTTCT-----------AGATACTTACTATAAGTTTTCTAGTAGCAAGATTGGAATCCCATCAGTTGACAGTGTATGAGCC---TAATATACATTATAAATCATT-----CTCACTTGCATTTTGTGTATACTTCATTATTAATATATTTGTTATTTCAACTCAGAATCATTGCTTA-------------AGTTCTTTCTGATCTTTATCTTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTATGATTAAATTCTTCAGACATTACCATCTTGTTTCTACAATGTCGATATCTTCATGTTTCCAGTGTCTTCACTATCAGATCCTTGCCATATCATCCTTTTCACATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGTATTATTGTAAGTTAAATGATATTTTCAGGATTTGCA----AACATATATTGCACATTTTCATGATGTCACAAAAAACTAATGGTaaccaggactcattagagaaatgattaattctaaaactgaggcagaaaatgtacaagctgagcccagaccattttttagtg-cagaaagcaaataaatgcttacaaacaaacaaacaaaacccttattgat i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152639814 738 - 185818997 GTGCTCGTGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTGCTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATAATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTATCTTTCTTCCTT--TATTTCTTACTTACTATGAGATACTTACTATAAGTTTTCTAGTAGCAATATCGGAATCCTATCAGTTCACAGTGTATGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGCATTTTGTGTATACTTCATTATTAATATATTTGTTATTTCAGCTCAGAACCATTGCTTAAGGACTAAAGTATAGTTCTTTCTGAACTTTATCTTTTCTCTGATTATCCTCTG------ATCGATAAA----------GTCTTTACAGTTAAACTCTT-GGACATTACCATTTTGTTTCTACAATGTCAATATCTTCATGTTTCCAGTGTCTTTACTATCAGATCCTTGCCAAATCATTCTTTTCACATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGTATTATTGTAGGTTAAATGATATTTCTGGGATTTGCA----AACATATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcacgaaatgtacaaggtgagcctagactattttttagtgccagaaagcaaatgaatgcttacaaacaaacaaacaaaacccatattgat i rheMac8.chr3 C 0 I 33 s macFas5.chr3 159448701 738 - 192294377 GTGCTCGTGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTGCTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATAATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTATCTTTCTTCCTT--TATTTCTTACTTACTATGAGATACTTACTATAAGTTTTCTAGTAGCAATATCGGAATCCTATCAGTTCACAGTGTATGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGCATTTTGTGTATACTTCATTATTAATATATTTGTTATTTCAGCTCAGTACCATTGCTTAAGGACTAAAGTATAGTTCTTTCTGAACTTTATCTTTTCTCTGATTATCCTCTG------ATCGATAAA----------GTCTTTACAGTTAAACTCTT-GGACATTACCATTTTGTTTCTACAATGTCAATATCTTCATGTTTCCAGTGTCTTTACTATCAGATCCTTGCCAAATCATTCTTTTCACATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGTATTATTGTAGGTTAAATGATATTTCTGGGATTTGCA----AACATATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcacgaaatgtacaaggtgagcctagactattttttagtgccagaaagcaaatgaatgcttacaaacaaacaaacaaaacccatattgat i macFas5.chr3 C 0 I 9 s macNem1.NW_012019910v1 5893361 738 + 9440265 GTGCTCGTGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTGCTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATAATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTAtctttcttcctt--tatttcttacttactATGAGATACTTACTATAAGTTTTCTAGTAGCAATATCAGAATCCTATCAGTTCACAGTGTATGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGCATTTTGTGTATACTTCATTATTAATATATTTGTTATTTCAGCTCAGAACCATTGCTTAAGGACTAAAGTATAGTTCTTTCTGAACTTTATCTTTTCTCTGATTATCCTCTG------ATCGATAAA----------GTCTTTACAGTTAAACCCTT-GGACATTACCATTTTGTTTCTACAATGTCAATATCTTCATGTTTCCAGTGTCTTTACTATCAGATCCTTGCCAAATCATTCTTTTCACATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGCATTATTGTAGGTTAAATGATATTTCTGGGATTTGCA----AACATATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcacgaaatgtacaaggtgagcctagactattttttagtgccagaaagcaaatgaatgcttacaaacaaacaaacaaaacccatattgat i macNem1.NW_012019910v1 C 0 I 33 s cerAty1.NW_012002954v1 5633127 737 + 21915920 GTGCTCGTGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTGCTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCAGAGAATTCCCATAATCCTGA---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTAtctttcttcctt--tatttcttacttactATGAGATACTTACTATAAGTTTTCTAGTAGCAATATCGGAATCCTATCAGTTCACAGTGTATGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGCATTTTGTGTACACTTCATTATTAATATATTTGTTATTTCAGCTCAGAACCATTGCTTAAGGACTAAAGTATAGTTCTTTCTGAACTTTATCTTTTCTCTGATAATCCTCTG------ATTGATAAA----------GTCTTTACAGTTAAACTCTT-GGACATTACCATTTTGTTTCTACAATGTCAATATCTTCATGTTTCCAGTGTCTTTACTATCAGATCCTTGCCAAATCATTCTTTTCACATAATTATGATAAATTATAAAAA-CTCAGTGTATTTGGTGTTATTGTAGGTTAAATGATATTTCTGGGATTTGCA----AACATATATTGCACATTTTAATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcacgaaatgtacaaggtgagcctagactattttttagtgccagaaagcaaataaatgcttacaaacaaacaaacaaaacccatattgat i cerAty1.NW_012002954v1 C 0 I 33 s chlSab2.chr2 12277607 738 - 90373283 CTGCTGGTGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTGTTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCAGATAATTCCCATAATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCAttatctttcttcctt--tatttcttacttactataatatacttactATAAGTTTTCTGGTAGCAATATCAGAATCCCATCAGTTCACAGTGTATGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGCATTTTGTGTATACTTCATTATTAATATATTCGTTATTTCAGCTCAGAACCATTGCTTAAGGACTAAAGTATAGTTGTTTCTGAACTTTATCTTTTCTCTGATTATCCTCTG------ATTCATAAA----------GTCTTTACAGTTAAACTCTT-GGACATTACCATTTTGTTTCTACAATGTCAATATCTCCATGTTTCCAGTATCTTTACTATCAGATCCTTGCCAAGTCATCCTTTTCTCATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGTATTATTGTAGGTTAAATGACATTTCCAGGATTTGCA----AACATATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcacgaaatgtacaagttgagcacagactattttttagtgccagaaagcaaataaatgcttacaaacaaacaaacaaaacccatattgat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 605482 738 + 1337817 GTGCTCGTGTCTTTTCTAGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTGCTGCTCTTTTC-TCGAGAGTCAAAAGTAAATGCAGATAATTCCCATAATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTATCTTTCTTCCTT--CATTTCTTACTTACTATGAGATACTTACTATAAGTTTTCTAGTAGCAATATCGGAATCCTATCAATTCACAGTGTATGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGCATTTTGTGTATACTTCATTATTAATATATTTGTTATTTCAGCTCAGAACCATTGCTTAACGACTAAAGTATAGTTCTTTCTGAACTTTATCTTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTACAGTTAAACTCTT-GGACATTACCATTTTGTTTCTACAATGTCAATATCTTCATGTTTCCAGTGTCTTTACTATCAGATCCTTGCCAAATCATTCTTTTCACATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGTATTATTGTAGGTTAAATGATATTTCTGGGATTTGCA----AACATATATTGCACATTTTCATGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcacgaaatgtacaaggtgagcctagactattttttagtgccagaaagcaaataaatgcttacaaacaaacaaacaaaacccatattgat i manLeu1.NW_012107264v1 C 0 I 33 s colAng1.NW_012116933v1 584172 734 - 3237654 CT----GTGTCTTTTCTGGACCTAAAATTCTACTGTTGTTTTA--------------AAAAGATTACTGCTCTTTTC-TTGAGAGTCAAAAGTAAATGCAGACAATTCCCGTAATCCTGG---GGTGGTCTTAAGGAACTTTTTAATGTCCTCATTATCGTTCTTCCTT--TATTTCTTACTTACTATAAGATACTTACTATAAGTTTTCTAGTAGCAATATCGGAATCCCATCAGTTCACAGTGTACGAGCCTAATATTATACATGATAAATCATT-----CTCACTTGTATTTTGTGTATACTTCATTATTAAGATATTTGTTATTTCAGCTCAGAACCATTGCTTAAGGACTAAAGTATAATTCTTTCTGAACTTTATCTTTTCTCTGATTATCCTCTG------ATTGATAAA----------GTCTTTACAGTTAAACTCTT-GGACATTACCATTTTGTTTCTACAATGTCAATAGATTCATGTTTCCAGGGTCTTTACTATCAGATCCTTGCCAAATCATCCTTTTCACATAATTATGATAAATTATAAAAATCTCAGTGTATTTGGTATTATTGTAGGTTAAATGATATTTCCAGGATTTGCA----AACATATATTGCACATTTTCTTGATGTCACAAAAAACTAATGATaaccaggactccttagagaaatgat------taaaactgaggcaggaaatgtacaagttgagcccagactattttttagtggcagaaagcaaataaatgcttacaaacaaacaaacaaaacccatattgat i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11416414 704 + 39895921 CCACTAATGTGTTTTC-AGACATAAATTTCTACTGTTGTTTTT------------------TTTTTTTTCCTCTTTC-TTGATAGTCTGAGGTGGATGCAGATAATGCTGATAAGCTCCA---GGTGGTCGTA-------------TGTCTTGCTTGTCTATCTTTCCTCCTGTCTCT-----------AGATATTTGCTACGAATT-------------GGTAGAATCTTAGTAGCTAACAGTGTAGAATTC---CAATATACACAATAAAGATTTACTCCCTCAGCTTTATTCC-TTCATACTTCTTCAATAGTATATTTGGTGTTTCAACTCAGAATCTGTGTGTGAGGATTGAAGTGTGGATTTTTCTGACCTTTACCATTTCTATGATCATT-----------ATGGGTAAAATATCAGTATGTTTGTGTAAGTAAACTCTTCTAATCTCACCAGTTTGCTTCTACGATTACTGTCTCTTCATGTATACACTGCCTTTATTATCAGATCCTCCCCATTTTACCCTTTTCACATAATTATGATAAATTATAAAAATCTCAATGCATTTGATTCTA-TGTAGGTT-AATGATATTTTTAGGGTGCATAAGGTAACATGTATTTCATATTTTCTTGATAGCACAAAG----CATGATaactagaactccctggag-aattatcgattctagaactgaagtggaaaatacacaagatgagtctggatcatcttgtagtgccagaaaataaagaaatgctc----acaaataaacaaaatctgtattgat i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 620042 706 - 6883506 ctgctaatgtcctttccagatctgaaattctCCtttttttttttttttttttttttttAAAGATTGCTTCTCTTTTCTTTGACAGGCAAAAGTAGATGCAGATAATGCTGATAATCCTGGTGTGGTGGTCTTAAGGAAA-TTTTAATGTCCTGATTATTTATTTTTCTT--TCTCTGT-----------------TTCCTAAAAATT-------------GGTGGAATCTCACTAGCTAAAGGTGCAGAACCCTAATATCAGACATTCTAAAACTTCA----CTCACTTA-GCTTTGTGTGTAC----------ACCTACTGGTGTTTCAAATAAAAAACCAGTGCTTGTGGGTTAAAGTATGGATATTTCTGACCTTTATCTTGTCTATGATTATTACTGGTAAAATATTTATAAA----------GTCTTGATGATTAAATTCTTCAAATGTCACCATTTTT---------TGTCAATCTCTTCATATTTTTAGTGCCTTTATTGCCAGATATTCTCCACTTCACCTTTTTTACATAATTATGATAAATTATGAAAATCTCTGTGCATACTGTTTTATTGTAGGTCAAGTGATATTTTTGGGAGGGAGAGGGTAATACATAATGCATATTCTCAGGATGACACAAAAAGCTTGTGATGaccagtgctccttgaagaaatggctgattctaagactggagcaagaaaactacaatataagactagagcatgccatagtg-----------------ctcccccaaaaaacaaacaaaacccatattaat i dasNov3.JH568778 N 0 C 0 a score=78667.000000 s hg38.chr21_GL383578v2_alt 9645 24 + 63917 gtaggtgtgtcgaagggacacagg s panTro5.chr21 846371 24 + 33445071 gtagatgtgtcgaagggacacagg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14531756 24 + 46275980 gtaggtgtgtcgaagggacacagg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 443801 24 - 13858734 gtaggtgtgtcgaagggacacagg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1570173 24 + 32716333 gtaggtgcttcagagggacacagg i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159449448 24 - 192294377 gaaggtgtgtcaaagggacacatg i macFas5.chr3 I 9 C 0 s chlSab2.chr2 12278345 24 - 90373283 gaaggtgtgtcaaagggacacatg i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 584906 24 - 3237654 gaaggtgtgtcaaagggacacatg i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11417118 24 + 39895921 ggaaatgtgtcaaagggaaataga i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 620748 24 - 6883506 gaaggtgtgtcaaagggacacagg i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 606220 33 + 1337817 I e cerAty1.NW_012002954v1 5633864 33 + 21915920 I e macNem1.NW_012019910v1 5894099 33 + 9440265 I e rheMac8.chr3 152640552 33 - 185818997 I a score=66883.000000 s hg38.chr21_GL383578v2_alt 9669 47 + 63917 agtcaactgaaagcgctcccaatggccaaaggtggaataagttgagc s panTro5.chr21 846395 47 + 33445071 agtcaactgaaagcgctcccaatggccaaaggtggaataagttgagc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14531780 47 + 46275980 agtcaactgaaagcactcccaatggccaaaggtggaataagttgagc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 443825 47 - 13858734 agtcaactgaaagagctcccaatggccaaaggtggaataagttgagc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1570197 47 + 32716333 agtcaactgaaagagctcccaatggccaaaggtggaataaattgagc i nomLeu3.chr25 C 0 I 990 s canFam3.chr31 11417142 47 + 39895921 agccaaccaaaagagctcctcatggcccaaactggaacagtttaagc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 620772 47 - 6883506 aatcatataaactaactcccaatggccaaagcaggaatcaatagagc i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12278369 0 - 90373283 C e colAng1.NW_012116933v1 584930 0 - 3237654 C e manLeu1.NW_012107264v1 606220 33 + 1337817 I e cerAty1.NW_012002954v1 5633864 33 + 21915920 I e macNem1.NW_012019910v1 5894099 33 + 9440265 I e rheMac8.chr3 152640552 33 - 185818997 I e macFas5.chr3 159449472 0 - 192294377 C a score=504701.000000 s hg38.chr21_GL383578v2_alt 9716 403 + 63917 aagaaaataaagtagtacaggataaaatttcaaagtataacatgcatatccatgagtccatattgatataataatatcaatatcataaatgattgaataaataagtaattaggagagaatggacacatctcccatatagaagaattccaaataatttatgtaaacactccactctcatggag------------------------------ggggtagacataatgacttccctccaac-agtgcagtatggaaagtgatgga--gggaatga---gtaactttacggtgaagaagactgatgaa-gctaactgagcgtgattatcaatgtcaacattaatagtcataactcatgttgatagtatgtacccttgacacgctgtcac-------aaaaatagcac-----------------------tttatttctgtaatattcctttcccccaagcccaataacctc s panTro5.chr21 846442 403 + 33445071 aagaaaataaagtagtacaggataaaatttcaaagtataacatccatatctatgagtccatattgatataataatatcaatatcataaatgattgaataaataagtaattgggagagagtggacacatctcccatatagaagaattccaaataatttatgtaaacactccactctcatggag------------------------------ggggtagacataatgacttccctccaac-agtgcagtatggaaagtgatgga--gggaatga---gtaactttacggtgaagaagcctgatgaa-gctaactgagcgtgattatcaatgtcaacattaatagtcataactcatgttgatagtatgtacccttgacacgctgtcac-------aaaaatagcac-----------------------tttatttctgtaatattcctttcccccaagcccaataacctc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14531827 403 + 46275980 aagaaaataaagtagtacaggataaaatttcaaagtataacatccatatctatgagtccatattgatataataatatcaatatcataaatgattgaataaataagtaattaggagagagtggacacatctcccatatagaagaattccaaataatttatgtaaacactccactctcatggag------------------------------ggggtagacataatgacttccctccaac-agtgcagtatggaaagtgatgga--gggaatga---gtaactttacggtgaagaagcctgatgaa-gctaactgagcgtgattatcaatgtcaacattaatagtcataactcatgttgatagtatgtacccttgacacgctgtcac-------aaaaatagcac-----------------------tttatttctgtaatattcctttcccccaaccccaataacctc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 443872 403 - 13858734 aagaaaataaagtagtacaggataaaagctcaaagtgtaacatccatatctatgagtccatattgatataataatatcaatatcataaacgattgaataaataagtaattaggagagagtggacacatctcccatatagaagaattccaaataatgtatgtaaacacttcactctcatggag------------------------------ggggtacacataatgacttccctccaac-agtgcagtatggaaagtgatgga--gggagtga---gtaactttacggtgaagaagcctgatgaa-gctaactgagcgtgattatcaatgtcaacattaatagtcataactcatgttgatagtatgtacccttgacatgccgtcac-------aaaaatagcac-----------------------tttatttctgtaatattcctttcccccaagcccaataacctc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1571234 403 + 32716333 AAGAaaatcaagtagtacaagataaaagctcaaagtgtaacatccatatctgtgagtccatattgatataataatatcaatatcataaatgattgaataaataagtaattaggagagagtggacacatctcccatatagaagaattccaaataatttatgtaaacactccactctcatggag------------------------------ggggtacacataatgacttccctccaac-agtgcagtatggaaagtgatgga--gggaatga---gtaactttacggtgaagaagcctgatgaa-gctaactgagcgtgattatcaatgtcaacattaatagtcataactcatgttgacagtatgtacccttgacacgctgtcac-------aaaaatatcac-----------------------tttatttctataatatttctttcccctaagcccaataacctc i nomLeu3.chr25 I 990 C 0 s canFam3.chr31 11417189 426 + 39895921 aagaaaataaagtagtattggattataaaccaaagtataaaataaatattcatgagtccatactgtattaataatataaatataacaaatgattgaataaatagataatggtaggagaaggaacaaatct---atgtacaagaacttcaagtaatttatgtagatacgttgcccttagggaaagga-atataactccccactccttaagagtgggctgcacatagtaa-tttctttaaat-aggagaatatggaaaggggtgag--ga----ga---gtaactttataggaaagaaggctaataaatactaactca----ggtagttaagatcaagagcaacagttacaaattttgttgatagtatgtactcatgatatgcttgtacccttgatgaaaatatcac-----------------------tttaattccatgatattc--ttcctccaaaatacataaccac i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 620819 435 - 6883506 aagatagtgaagaaatattgaattataagccaaagtataaaataaatatacatgagtccaaaatga-----------------cataaattattgaataaataaataaataggggagaagagacaaatctttcatgtaaaagaattcctaatattttatataaa-actcca---tcaaggaggggaggcatagatcctcagtccttaagtgaggactgcacataatgaattccatctaaagaatacaatatggaaagtggtggaatgggggtgaggggtaaccttacagttgagaaacctaacaaacactatctcagccagatgatcaaggtctacatcaatggtaacaagtcgtgctgatagtgagaacccttgatattatgttat-------aaaaatggcataaaaagcaaaacaaaacactccacttacctctg-----ttctttctctccaa--cacataacacc i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12278369 0 - 90373283 C e colAng1.NW_012116933v1 584930 0 - 3237654 C e manLeu1.NW_012107264v1 606220 33 + 1337817 I e cerAty1.NW_012002954v1 5633864 33 + 21915920 I e macNem1.NW_012019910v1 5894099 33 + 9440265 I e rheMac8.chr3 152640552 33 - 185818997 I e macFas5.chr3 159449472 0 - 192294377 C a score=672435.000000 s hg38.chr21_GL383578v2_alt 10119 100 + 63917 agtataatcatgagaagaa--catcaaacaaattccagtggagggacatcccacaaaa-tact-----t------tactcctcaaaagtgttcagatcatcaagtaaaaac-aaa s panTro5.chr21 846845 100 + 33445071 agtataatcatgagaagaa--catcaaacaaattccagtggagggacatcctacaaaa-tact-----t------tactcctcaaaagtgttcagatcatcaagtaaaaac-aaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532230 100 + 46275980 agtataatcatgagaagaa--catcaaacaaattccagtggagggacatcctacaaaa-tact-----t------tactcctcaaaagtgttcagatcatcaagtaaaaac-aaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444275 100 - 13858734 agtataatcatgagaagaa--catcaaacaaattccagtggagggacatcctacaaaa-tgct-----t------tactcctcaaaagtgttcagataatcaagtaaaaac-aaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1571637 100 + 32716333 agtataatcatgagaaaaa--catcaaacaaattccagtggagggacatcctacaaaa-tact-----t------tactcctcaaaagtgttcaggtcatcaagtgaaaac-aaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152640585 100 - 185818997 agtataatcatgagaaaaa--catcagacgaattccagtagagggacatcctacaaaa-cact-----t------tactcctcaacagtgttcaggtactcatgtaaaaac-aaa i rheMac8.chr3 I 33 C 0 s macFas5.chr3 159449472 100 - 192294377 agtataatcatgagaaaaa--catcagacgaattccagtagagggacatcctacaaaa-cact-----t------tactcctcaacagtgttcaggtactcatgtaaaaac-aaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894132 100 + 9440265 agtataatcatgagaaaaa--catcagacgaattccagtagagggacatcctacaaaa-cact-----t------tactcctcaacagtgttcaggtactcatgtaaaaac-aaa i macNem1.NW_012019910v1 I 33 C 0 s cerAty1.NW_012002954v1 5633897 100 + 21915920 agtataatcatgagaaaaa--catcagacgaattccagtagagggacatcctacaaaa-cact-----t------tactcctcaacagtgttcagatactcatgtaaaaac-aaa i cerAty1.NW_012002954v1 I 33 C 0 s chlSab2.chr2 12278369 100 - 90373283 agtataatcatgagaaaaa--catcagacgaattccagtagagggacatcctacaaaa-cact-----t------tactcctcagcagtgttcaggtactcaagtaaaaac-aaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 606253 101 + 1337817 agtataatcatgagaaaaa--catcagacgaattccagtagagggacatcctacaaaa-cact-----t------tactcctcaacagtgttcaggtactcatgtaaaaacaaaa i manLeu1.NW_012107264v1 I 33 C 0 s colAng1.NW_012116933v1 584930 100 - 3237654 agtataatcatgagaaaaa--catcagacacattccagtagagagacatcctacaaaa-tact-----t------tactcctcaacagtgttcagatactcaagtaaaaac-aaa i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11417615 106 + 39895921 agtataaccataagaaaaa--tatcaaacaaattccagtcaggggagatactacaaaagtactgaccag------tactcctcaaagctgtctagatgatcaagcaaaaac-aaa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621254 104 - 6883506 agtctaatcatgagaaaaactcatcagataaattccactagaagagcatcctggaaaa-tacc-----taaccagtactcctcaaaactgataaggtcat----taaaaac-aaa i dasNov3.JH568778 C 0 I 108 a score=3357030.000000 s hg38.chr21_GL383578v2_alt 10219 565 + 63917 atctaggaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctgaatgagttcctggaataggaaaaggatattaggtaaaaaccaaggaaatctgaacaaattatggacttcgataaatgaataacaatgcatctgtattggttcattaatcataacaagtgtaccatattaca-------------aacaggaaaaactgagcctggagtacatggaaactctgtgtactattttgcaaaattttctgtaaatctaaacctgttttagaaaataaagtttattttt-aaa---------aaAAATGAAATCAGACTTCAGAACT-----TCTCGGC--TATTTTGAGCTTAGT---GCTGGTAACATAAAAAAA-GGTTTAAACTATCTTTAAAACTTCGTGAGGGATGATATGAACATATAACTAGGCATTTCTACTAGCTTTTCA-AATAAAATTAACTTAGTTTTGGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCGCAAAGCTTTTTCCTTAAATATTAAGTTTTGAAGAAATGTAATTTAGTAGGAC s panTro5.chr21 846945 566 + 33445071 atctaggaaaccgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctgaatgagttcctggaataggaaaaggatattaggtaaaaaccaaggaaatctgaacaaattatggacttcgataaatgaataacaatgcatctgtattggttcattaatcataacaaatgtaccatattaca-------------aacaggaaaaactgagcctggagtacatggaaactctgtgtactattttgcaaaattttctgtaaatctaaacctgttttagaaaataaagtttattttt-taa---------aaAAATGAAATCAGACTTCAAAACT-----TCTCGGC--TATTTTGAGCTTAGT---GCTGGTAACATAAAAAAAAGGTTTAAACTATCTTTAAAACTTCGTGAGGGATGATATGAACATATAACTAGGCATTTCTACTAGCTTTTCA-AATAAAATTAACTTAGTTTTGGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCACAAAGCTTTTTCCTTAAATATTAAGTTTTGAGGAAATGTAATTTAGTAGGAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532330 566 + 46275980 atctaggaaaccgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcagtgtggcatcctgaatgggttcctggaataggaaaaggatattaggtaaaaaccaaggaaatctgaacaaattatggacttcgataaatgaataacaatgcatctgtattggttcattaatcataacaaatgtaccatattaca-------------aacaggaaaaactgagcctggagtacatggaaactctgtgtactattttgcaaaattttctgtaaatctaaacctgttttagaaaataaagtttattttt-taa---------aaAAATGAAATCAGACTTCAAAACT-----TCTCGGC--TATTTTGAGCTTAGT---GCTGGTAACATAAAAAAAAGGTTTAAACTATCTTTAAAACTTCGTGAGGGATGATATGAACATATAACTAGGCATTTCTACTAGCTTTTCA-AATAAAATTAACTTAGTTTTGGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCACAAAGCTTTTTCCTTAAATATTAAGTTTTGAGGAAATGTAATTTAGTAGGAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444375 565 - 13858734 atctaggaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctgaatgagttcctggaataggaaaaggatattaggtaaaaaccaaggaaatctgaacaaattatggacttcgataaatgaataacaatgcatctgtattggttcatgaatcataacaaatgtaccatattaca-------------aacaggaaaaactgaacctggagtacatggaaactctgtgtactattttatgaaattttctgtaaatctaaacctgttttagaaaataaagtcta-tttt-aaa---------aaaAATGAAATCAGACTTCAAAACT-----TCTCGGC--TATTTTGAGCTTAGT---GCTGGTAACATAAGAAAATGGTTTAAACAATCTTTAAAACTTCGTGAGGGATGATATGAACATATAACTAGGCATTTCTATAAGCTTTTCA-AATAAAATTAACTGAGTTTTGGCTTACAAAAAT-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCACAAAGCTTTTTCCTTCAATATTAAGTTTTGAGGAAATGTAATTTAGTAGGAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1571737 566 + 32716333 atctaggaaactgtcacaggcatcaggagcctaaggaggcagacataatagctgaatgcagtgtggcatcctgagtgagttcctggaataggaaaaggatattaggtaaaaaccaaggaaatctgaacaaattatggacttcgataaatgaataacaacgcatctgtattggttcattaatcataacaaatgtaccatattaca-------------aacaggaaaaactgatcctggagtacatggaaagtctgtgtaccattttacgaaattttctgtaaatctaaacctgttttggaaaataaagtctattttt-taa---------aaAAATGAAATCAGACTTCAAAACT-----TCTCGGC--TATTTTGAGCTTAGC---GCTGGTAACATAAGAAAAAGGTTTAAACTATCTTTAAAACTTCGTGAAGGATGATGTGAACATATAACTAGGCATTTCTACTGGCTTTTCA-AATAAAATTAACTGAGTTTTGGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCACAAAGCTTTTTCCTTAAATAATAAGTTTTGAGGAAATGTAATTTAGTAGGGC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152640685 563 - 185818997 atctaggaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctggatgacttcctggaataggaaaaggatattaggtaaaaaccaaggacatctgaacaaattatggacttcgataaataaataacaatgcatttgtattggtccattaatcataacaaatgtaccatattaca-------------aataggaaaaactgagtctggagtacatgaagactctgtgtactattttatcaatttttctgtaaatcaaaacctgttttagagaataaagtcta--ttt-aaa---------aaaaATGAAATCAGACTTCAAAACT-----TCTTGGC--TATTTTGAGCTTAGT---GCTGGTAACATTAAAAAAAGGTTTAAACTATCTTTAAAACTTTGTGAGGGATGATATG-ACATATACCTAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCGCTTACAAAAAG-------ATTATCATGAAGCCTACTCTAATTTCCCATACATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATTTAGTAGGAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159449572 563 - 192294377 atctaggaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctggatgacttcctggaataggaaaaggatattaggtaaaaaccaaggacatctgaacaaattatggacttcgataaataaataacaatgcatttgtattggtccattaatcataacaaatgtaccatattaca-------------aataggaaaaactgagtctggagtacatgaagactctgtgtactattttatcaatttttctgtaaatcaaaacctgttttagagaataaagtcta--ttt-aaa---------aaaaATGAAATCAGACTTCAAAACT-----TCTTGGC--TATTTTGAGCTTAGT---GCTGGTAACATTAAAAAAAGGTTTAAACTATCTTTAAAACTTTGTGAGGGATGATATG-ACATATACCTAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATTTAGTAGGAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894232 563 + 9440265 atctaggaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctggatgacttcctggaataggaaaaggatattaggtaaaaaccaaggacatctgaacaaattatggacttcgataaataaataacaatgcatttgtattggtccattaatcataacaaatgtaccatattaca-------------aataggaaaaactgagtctggagtacatgaagactctgtgtactattttatcaatttttctgtaaatcaaaacctgttttagagaataaagtcta--ttt-aaa---------aaaaATGAAATCAGACTTCAAAACT-----TCTTGGC--TATTTTGAGCTTAGT---GCTGGTAACATTAAAAAAAGGTTTAAACTATCTTTAAAACTTTGTGAGGGATGATATG-ACATATACCTAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATTTAGTAGGAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5633997 562 + 21915920 atctaagaaaccgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctggatgacttcctggaataggaaaaggatattaggtaaaaaccaaggaaatctgaacaaattatggacttcgataaataaataacaatgcatttgtattggtccattaatcataacaaatgtaccatattaca-------------aataggaaaaactgagtctggagtacatggaaactctgtgttctattttatcaatttttctgtaaatcaaaacctgttttagagaataaagtcta---tt-aaa---------aaaaaTGAAATCAGACTTCAAAACT-----TCTTGGC--TATTTTGAGCTTAGT---GCTGGTAACATTAAAAAAAAGTTTAAACTATCTTTAAAACTTTGTGAGGGATGATATG-ACATATACCTAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATATATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATTTAGTAGGAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12278469 561 - 90373283 atctagaaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcagtgtggcatcctggatgacttcctggaatagg-aaaggatattaggtaaaaaccaaggacatcttaacaaattatggacttcaataaataaataacaatgcatttgtattggtccactaatcataacaaatgtaccatactaca-------------aacaggaaaaactgagtctggagtacatggaaaccctgtgtactattttatcaatttttctgtaaatcaaaacctgttttagagaataaagtcta--ttt--aa---------aaaaaTAAAATCAGACTTCAAAACT-----TCTTGGC--TATTTTTCGCTTAGT---GCTAGTAACATTAAAAAAAGGTTTAAACTATCTTTAAAACTTTGTGAGGGATGATATG-ACATATACCTAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATTTAGTAGGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 606354 563 + 1337817 atctaggaaaccgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctggatgacttcctggaataggaaaaggatattaggtaaaaaccaaggacatctgaacaaattatggacttcgataaataaataacaatgcatttgtattggtccattaatcataacaaatgtaccatattaca-------------aataggaaaaactgagtctggagtacatggaaactctgtgtactattttatcaatttttctgtaaatcaaaacctgttttagagaataaagtcta--ttt-aaa---------aaaaATGAAATCAGACTTCAAAACT-----TCTTGGC--TATTTTGAGCTTAGT---GCTGGTAACATTAAAAAAAGGTTTAAACTATCTTTAAAACTTTGTGAGGGATGATATG-ACATATACCTAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCGCTTACAAAAAG-------ATTATGATGAAGCCTACTCTAATTTCCCATACATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATTTAGTAGGAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 585030 564 - 3237654 atctaggaaactgtcacaggcatcaggagcctaaggagacagacataatagctgaatgcaatgtggcatcctggatgacttcctgaaataggaaaaggatattaggtaaaaaccaaggacatctgaacaaattatggactttgataaataaataacaatgcatttgtattggtccattaatcataacaaatgtaccatattaca-------------aataggaaaaactgagtctgaagtacatggaaactctgtgtactgttttatcaaattttctgtaaatctaaacctgttttagagaataaagtcta--tttaaaa---------aaaAATGAAATCAGACCTCAAAACT-----TCTTGGC--TATTTTGAGCTTAGT---GCTGGTAACATTTAAAAAAGGTTTAAACTATCTTTAAAACTTTGTGAAGGATGATATG-ACATATACATAGGTATTTTTACTAGCTTTTCA-AATAAAATTAACTGAGTTTTCACTTACAAAAAG-------ATTATGATGCAGCCTACTCTAATTTCCCATACATCAGAAAGCTTTTTCCTAAAATAATAAGTTTTAGGAAAATGTAATGTAGTAGAAC i colAng1.NW_012116933v1 C 0 I 26 s canFam3.chr31 11417721 497 + 39895921 gtctaagaaactgtaacagacaacaggagcctaaag----agacataacagctaaatgtaatgtggcattctggatagaatcctggaactgaaaagggatattag------------------------------------------------------------gtattgatccattaattgtaataaatgtaccatactaaagtaagatagtaataaaaggagaagctgggtccgg---------gaactctgtgtactattttcttaatttttctgtaaatctaaatctgttttTTTT--TAAAGGCCA--TTT-AAAAAAACCCAGAAAACCAAAATCagacttcaaacctgaggattatgacaacacttttagctgagtccagatgataatatcagaaaaaaggttaatgtatctctaagactttgT----------------------------ATTTTAGTTAGCCTTACAGAATAAAATTA---GAGTTTGCCTGTAACAAAAGAAAGTTTATGATTATGAAATCTACTGTGGTTCCTGATACATCAC-AAGCTTTTTCCTAAAACAATAAAATTTGAGAAAATGTAATTCAGTAAGAC i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I a score=-2242.000000 s hg38.chr21_GL383578v2_alt 10784 4 + 63917 AT--TT s panTro5.chr21 847511 5 + 33445071 GT-CTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532896 5 + 46275980 TT-TTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444940 5 - 13858734 tt-ttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572303 6 + 32716333 ATTTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641248 4 - 185818997 --TTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450135 4 - 192294377 --TTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894795 4 + 9440265 --TTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5634559 4 + 21915920 --TTTT i cerAty1.NW_012002954v1 C 0 I 22 s chlSab2.chr2 12279030 4 - 90373283 --TTTT i chlSab2.chr2 C 0 I 23 s manLeu1.NW_012107264v1 606917 4 + 1337817 --TTTT i manLeu1.NW_012107264v1 C 0 I 22 s canFam3.chr31 11418218 4 + 39895921 --AATT i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I e colAng1.NW_012116933v1 585594 26 - 3237654 I a score=3276.000000 s hg38.chr21_GL383578v2_alt 10788 1 + 63917 T s panTro5.chr21 847516 1 + 33445071 T i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532901 1 + 46275980 T i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444945 1 - 13858734 t i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572309 1 + 32716333 T i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641252 1 - 185818997 T i rheMac8.chr3 C 0 I 21 s macFas5.chr3 159450139 1 - 192294377 T i macFas5.chr3 C 0 I 1 s macNem1.NW_012019910v1 5894799 1 + 9440265 T i macNem1.NW_012019910v1 C 0 I 21 s canFam3.chr31 11418222 1 + 39895921 T i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I e chlSab2.chr2 12279034 23 - 90373283 I e colAng1.NW_012116933v1 585594 26 - 3237654 I e manLeu1.NW_012107264v1 606921 22 + 1337817 I e cerAty1.NW_012002954v1 5634563 22 + 21915920 I a score=7836.000000 s hg38.chr21_GL383578v2_alt 10789 21 + 63917 TGTAACTTTTTTTTTtttt-------------tg s panTro5.chr21 847517 20 + 33445071 TGTAACTTTTTTTTttttt--------------g i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532902 21 + 46275980 TGTAACTTTTTTTTTtttt-------------tg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444946 34 - 13858734 tgtaactttttttttttttttttttttttttttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572310 22 + 32716333 TGTAACTTTTTTTTTTttt------------ttt i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159450141 20 - 192294377 AATAACTTTTATATATACA-------------t- i macFas5.chr3 I 1 C 0 s canFam3.chr31 11418223 14 + 39895921 -----TCTATTTCTTTTCA--------------- i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I e chlSab2.chr2 12279034 23 - 90373283 I e colAng1.NW_012116933v1 585594 26 - 3237654 I e manLeu1.NW_012107264v1 606921 22 + 1337817 I e cerAty1.NW_012002954v1 5634563 22 + 21915920 I e macNem1.NW_012019910v1 5894800 21 + 9440265 I e rheMac8.chr3 152641253 21 - 185818997 I a score=7743.000000 s hg38.chr21_GL383578v2_alt 10810 2 + 63917 gt s panTro5.chr21 847537 2 + 33445071 gt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532923 2 + 46275980 gt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444980 2 - 13858734 gt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572332 2 + 32716333 gt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641274 2 - 185818997 at i rheMac8.chr3 I 21 C 0 s macFas5.chr3 159450161 2 - 192294377 at i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894821 2 + 9440265 at i macNem1.NW_012019910v1 I 21 C 0 s cerAty1.NW_012002954v1 5634585 2 + 21915920 at i cerAty1.NW_012002954v1 I 22 C 0 s chlSab2.chr2 12279057 2 - 90373283 at i chlSab2.chr2 I 23 C 0 s manLeu1.NW_012107264v1 606943 2 + 1337817 AC i manLeu1.NW_012107264v1 I 22 C 0 s colAng1.NW_012116933v1 585620 2 - 3237654 at i colAng1.NW_012116933v1 I 26 C 0 s canFam3.chr31 11418237 2 + 39895921 GT i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I a score=763894.000000 s hg38.chr21_GL383578v2_alt 10812 139 + 63917 atttttagtacacatggggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcataagccactgcgcccggccATACAACCTTTTAAG s panTro5.chr21 847539 139 + 33445071 atttttagtacacatggggtttcaccgtgttagtcaggatggtctcaatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcataagccactgcgcctggccATACAACCTTTTAAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14532925 139 + 46275980 atttttagtacacgtggggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcataagccactgcgcccggccATACAACCTTTTAAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 444982 139 - 13858734 atttttagtagagatggggtttcaccgtgttagccaggatggtctcaatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccATACAACCTTTTAAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572334 139 + 32716333 atttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatccacccgccttggcctccaaaagtgctgggattacaggcgtgagccaccacgcccggccATACAACCTTTTAAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641276 139 - 185818997 atttttagtagagatggggtttcaccatgttagccaggatcgtctcaatctcctgaccttgtgatctgcccaccttggcctcccaacgtgctgggattacaagcatgagccaccacgcctggccATATAACCTTTTAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450163 139 - 192294377 atttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatctgcccgccttggcctcccaacgtgctgggattacaagcatgagccaccacgcctggccATATAACCTTTTAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894823 139 + 9440265 atttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatctgcccgccttggcctcccaatgtgctgggattacaagcatgagccaccacgcctggccATATAACCTTTTAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5634587 139 + 21915920 atttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgactttgtgatctgtctgccttggcctcccaacgtgctgggattacaagcatgagccaccgtgcccggccATATAACCTTTTAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279059 139 - 90373283 atttttagtagagatgggatttcatcctgttagccaggatggtctcaatctcctgaccttgtgatctgcccgccttggcctcccaatgtgctggaattacaagcatgagccaccatgcccATCCATATAATCTTTTAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 606945 139 + 1337817 atttttagtagagatggggtttcaccatgttagccaggatggtctcaatctcctgactttgtgatctgtctgccttggcctcccaacgtgctgggattacaagcatgagccactgcgccaggccATATAACCTTTTAAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 585622 135 - 3237654 atatttagtagagatggagtttc----tgttagccaggatggtctcaatctcctgaccttgtgatctgcccgccttggcctcccaacgtgctgggattacaagcatgagccaccgcacccagccATATAACCTTTTAAG i colAng1.NW_012116933v1 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I e canFam3.chr31 11418239 0 + 39895921 C a score=119793.000000 s hg38.chr21_GL383578v2_alt 10951 20 + 63917 TTTGAAAATTGCctttacaa s panTro5.chr21 847678 20 + 33445071 TTTGAAAATTGCctttacaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533064 20 + 46275980 TTTGAAAATTGCctttacaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445121 20 - 13858734 TTTGAAAATTGCctttacaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572473 20 + 32716333 GTTGAAAATTGCCTTTACAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641415 20 - 185818997 TTTGGAAATTGCCTTTACAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450302 20 - 192294377 TTTGGAAATTGCCTTTACAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894962 20 + 9440265 TTTGGAAATTGCCTTTACAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5634726 20 + 21915920 TTTGGAAATTGCCTTTACAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279198 20 - 90373283 TTTGGAAATTGCCTTTACAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607084 20 + 1337817 TTTGGAAATTGCCTTTACAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 585757 20 - 3237654 TTTGAAAATTGCctttacaa i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11418239 19 + 39895921 TTTGAAATTTGGTTTTTAA- i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I a score=50432.000000 s hg38.chr21_GL383578v2_alt 10971 7 + 63917 atgtgtc s panTro5.chr21 847698 7 + 33445071 atgtgtc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533084 7 + 46275980 atgtgtc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445141 7 - 13858734 atgtgtc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572493 7 + 32716333 ATGTGTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641435 7 - 185818997 ATGTGTC i rheMac8.chr3 C 0 I 498 s macFas5.chr3 159450322 7 - 192294377 ATGTGTC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894982 7 + 9440265 ATGTGTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5634746 7 + 21915920 ATATGTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279218 7 - 90373283 ATGTGTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607104 7 + 1337817 ATGTGTC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 585777 7 - 3237654 atgtgtc i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18306751 7 - 38779656 atgtgac i otoGar3.GL873528 N 0 C 0 s canFam3.chr31 11418258 7 + 39895921 Atgtgat i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I a score=3002962.000000 s hg38.chr21_GL383578v2_alt 10978 448 + 63917 atagttaccattaattctcacttcgtagatagggtagcta--------gtacacagat------gtgcttagtgtc-caaagctaataagacagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttattgcacaaacttatcag---------------taaaatattgtgagaagcaac-cacagtatatgaatatgt----gtttataaattatatgcatttatatctaaatt-attttgggtaaactataaagcatacCTCAA--------------------------------AGTAAGTATTAAGATGATTCAATTACAAATTTATACAAACTGAATTTTTAT----TTT-TTT-CATGCACCAGATGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc------aaaaaaa--gccc---ac---tta s panTro5.chr21 847705 449 + 33445071 atagttaccattaattctcacttcgtagatagggtagcta--------gtacacagat------gtgcttagtgtc-caaagctaataagacagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttattgcacaaacttatcag---------------taaaatattgtgagaagcaac-cacagtatatgaatatgt----gtttataaattatacgcatttatatctaaatt-attttgggtaaactataaagcatacctcaa--------------------------------agtaagtattaagatgatTCAATTACAAATTTATACAAACTGAATTTTTAT----TTT-TT--CATGCACCAGATGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc------aaaaaaaaagccc---ac---tta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533091 448 + 46275980 atagttaccattaattctcacttcgtagatagggtagcta--------gtacacagat------gtgcttagtgtc-caaagctaataagacagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttattgcacaaacttatcag---------------taaaatattgtgagaagcaac-cacagtatatgaatatgt----gtttataaattatatgcatttatatctaaatt-attttgggtaaactataaagcatacctcaa--------------------------------agtaagtattaagatgatTCAATTACAAATTTATACAAACTGAATTTTTAT----TTT-TTT-CATGCACCAGATGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttatcgatgtgtaacaaaccatctcaaaac-acattattttgtggc------aaaaaaa--gccc---ac---tta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445148 448 - 13858734 atagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttagtgtc-caaagctaataagacagaatcaagacctgatcccaatcatcagattcctagttgaagtttcttttcaccacaccagtggtctccaaacattttcattgcacaaacttatcag---------------taaaatattgtgagaagcaac-cacagtatatgaatatgt----gtttaaaaattatacacatttatatctaaatt-attttgggtaaactataaaacatacCTCAA--------------------------------AGTAAGTACTAAGATGATTCAATTACAAATTTATACAAACTGAATTTTTAT----TTT-TTT-CATGCACCAGATGTTTATTTGTGCAGCCTTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc------aaaaaaa--gccc---ac---tta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572500 449 + 32716333 Atagttaccattaattctcacttggtagataggttagcta--------gtacagagat------gtgcttagtgtc-caaagctaataagacagaatcaggacctgatcccaatcatcagactcctagttgaatgttcttttcaccacaccagcggtctccaaacatttttattgcacaaacttatcag---------------taaaatattgtgagaagcaac-cacagtatatgattatgt----gtttataaattatatgcatttatatctaaatt-attttgggtaaactctaaagcacacCTCAA--------------------------------AGTAAGTATTAAGATGATTCAATTACAAATTTATACAAACTGAATTTTTAT----TTT-TTT-TATGCACCAGGTGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------cgaagtatttattgatgtgtaacaaaccatctcaaagc-acattattttgtggc------aaagaaa-agccc---ac---tta i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152641940 448 - 185818997 gtagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttactgcac--acttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattatatgcatttatatctaaatt-attttgggtaaactacaaagcatacctcaa--------------------------------agtaagtattaagatgatTCAATTACAAATTTATACAAACTAAATTTTTAT----TTT-TTT-AATGCACCAGGTGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc----aaaaaaaaa--gctc---ac---tta i rheMac8.chr3 I 498 C 0 s macFas5.chr3 159450329 447 - 192294377 gtagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttactgcac--acttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattatatgcatttatatctaaatt-attttgggtaaactacaaagcatacCTCAA--------------------------------AGTAAGTATTAAGATGATTCAATTACAAATTTATACAAACTAAATTTTTAT----TTT-TTT-AATGCACCAGGTGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc-----aaaaaaaa--gctc---ac---tta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5894989 447 + 9440265 gtagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttactgcac--acttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattatatgcatttatatctaaatt-attttgggtaaactacaaagcatacctcaa--------------------------------agtaagtattaagatgatTCAATTACAAATTTATATAAACTAAATTTTTAT----TTT-TTT-AATGCACCAGGTGTTTATTTGTGTAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc-----aaaaaaaa--gctc---ac---tta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5634753 447 + 21915920 gtagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttactgcac--acttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattatgtgcatttatatctaaatt-attttgggtaaactacaaagcatacctcaa--------------------------------agtaagtattaagatgatTCAATTACAAATTTATACAAACTAAATTTTTAT----TTT-TTT-AATGCACCACGTGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc-----caaaaaaa--gctc---ac---tta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279225 451 - 90373283 gtagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttactgcac--acttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattatatgcatttacatctaaatt-attttgggtaaactacaaagcatacCTCAA--------------------------------AGTAAGTATTAAGATGATTCAATTACAAATTTATACAAACTGAATTTTTAT----TTT-TTTCCATGCACCAGGTGTTTATTTGTGCAGACCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc--aaaaaaaaaaa--ggtc---ac---tta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607111 446 + 1337817 gtagttaccattaattctcactttgtagataggttagcta--------gtacagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaagtttcttttcaccacaccagtggtctccaaacatttttactgcac--acttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattatatgtatttatatctaaatt-attttgggtaaactacaaagcatacctcaa--------------------------------agtaagtattaagatgatTCAATTACAAATTTATACAAACTAAATTTTTAT----TTT-TTT-AATGCACCAGGTGTTTATTTGTGCAGCCCTCTTTGTAAACTACt-gct-------------ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggc------aaaaaaa--gctc---ac---tta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 585784 454 - 3237654 atagttaccattaattctcactttgtagataggttagcta--------gtatagagat------gtgcttaatgtt-caaagctaataagaaagaatcaagacctgatcccaatcatcagactcctagttgaaggttcttttcaccacaccagtggtctccaaacatttttactgcacaaacttatcag---------------taaaatattgtgagaagcaac-cacaggatatgattatgt----gtttataaattttatgca-tTATATCTAAATT-ACTTTGGGTAAGCTACAAAGCATACCTCAA--------------------------------AGTAAGTATTAAGATGATTCAATTACAAATTTACACAAACTGAATTTTTAT----TTTATTT-CATGCACCAGGTGTTTATTTGTGCAGCCCTCTTTGTAAACTACT-ACT-------------Ccaattatttattgatgtgtaacaaaccatctcaaaac-acattattttgtggcaaaaaaaaaaaaa--gccc---ac---tta i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18306758 460 - 38779656 atagctactgttaattcttaccttgtagacgggaaagcta--------gtggaca---------tcgctcagtgtc-acaagctaaggagacagaatcaagacttccacccagtcttcaggctccttgttgaaggtccttcctacctcaccagtagtcttcagatattttcattatagaaacttaccag---------------taaaatagtgtgagaagcaac-cttagg-tatgattatttatagattgataaattatatgcatggacttctaaattaattttgggtaaattattaagcatactccaa--------------------------------aGTAAATAATAAGATGATTCAATAGCAAACATGTATACATCGAATTTTTATA--ACTT-TTC-CATGTACCAGGTGTTTATTTGTGCAGCCCTCTTTGCTGAATACCAGTT-------------Ctaattctttattgaaatgtagcaaaccatcttaaaacaacaacattttgtggt--ttataaaaaaa--gcacttatt---tta i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11418265 520 + 39895921 gtagttatcattgattctcactt-gcagattgg---gctatgctcaagatacagagatatagagatgctcaaggttacaaaactaacaggactgaatagagacctgaacccaatcttcaggttccTAGAAGAAAATTTGGTCTTCTACAAcagtggtctctaaatatttttatggaatgcacttctcagtaaattttttttcaataaaatattttgagaagcatctctgagtatatgtttgtat----gtttataaatcatgtgcatgtactgctaaattaatttttagtaaagtataaattatacTTAAGTATATCAAGTATTAATATACTATTAATACACTATTAAGTATTAAGATGATTCAATAACAAATGCATATAAATTAAATGTCTATAATATTT-TTC-TGTGTACCAGGTGACTGTT----AAGCCTTGTTTGTAAAGTACT-GCTCAATAGCAGtgtgccaattatttattactgtgtaacaacccatctcaaaac------aatttgtggg-----ttaaaagc--attt---gcatttta i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 621358 108 - 6883506 I a score=867174.000000 s hg38.chr21_GL383578v2_alt 11426 121 + 63917 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagatggtgactggggcctgaatcatttg---gcttgCTTACTCAC s panTro5.chr21 848154 121 + 33445071 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagatggtgactggggcctgaatcatttg---gcttgcttactcac i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533539 121 + 46275980 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagatggtgactggggcctgaatcatttg---gcttgcttactcac i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445596 121 - 13858734 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagatggtgactggggcctgaatcatttg---gcttgcttactcac i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1572949 121 + 32716333 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagatggtgactggggcctgaatcatttg---gcttgcttactcac i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642388 120 - 185818997 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagattgtgactgggccttgaaTCA-TTG---GCTTGCTTACTCAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450776 120 - 192294377 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagattgtgactggggcttgaaTCA-TTG---GCTTGCTTACTCAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895436 120 + 9440265 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagattgtgactggggcttgaaTCA-TTG---GCTTGCTTACTCAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635200 120 + 21915920 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagattgtgactggggcttgaaTCA-TTG---GCTTGCTTACTCAC i cerAty1.NW_012002954v1 C 0 I 3 s chlSab2.chr2 12279676 120 - 90373283 ttattatctctcatgggcctggggttgactgggcttagcagggtggttggtacttagggcctctcatatggttgctgtcagattgtgactggggcccgaaTCA-TTA---GCTTGCTTACTCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607557 120 + 1337817 ttattatctctcatgggcctggggttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagattgtgactggggcttgaatca-ttg---gcttgCTTACTCAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586238 120 - 3237654 ttattatctctcatgggcctggagttgactgggctcagcagggtggttgttacttagggcctctcatatggttgctgtcagatcatgactggggcctgaaTCT-TTG---GCTTGCTTACTCAC i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18307218 95 - 38779656 ttaatatctttcatgaat----------ctgggctcagcccagtagttgacgctcagggtttctcatgtggttgtggtcagatggcgactggggccagaatca-tc------------------ i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11418785 122 + 39895921 atacaattttgtatggttctagggttgactgggctcagctgggtggttcttactcagggcagcattcatggttgcagtcacatactgat--gggccagaatcatctgacagcttgggcattcac i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621466 104 - 6883506 TTGttatctctcatgattctgggg-tgactgagctcagctaggcagtactttctcagggtctctcatatggctgcagtcaggt------tgcagccagaatca-tca---gtctc--------- i dasNov3.JH568778 I 108 C 0 a score=29575.000000 s hg38.chr21_GL383578v2_alt 11547 4 + 63917 CTAT s panTro5.chr21 848275 4 + 33445071 ctat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533660 4 + 46275980 ctat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445717 4 - 13858734 ctat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573070 4 + 32716333 ctat i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642508 4 - 185818997 CTAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450896 4 - 192294377 CTAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895556 4 + 9440265 CTAT i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12279796 4 - 90373283 CTAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607677 4 + 1337817 CTAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586358 4 - 3237654 CTAT i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18307313 4 - 38779656 ctgt i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11418907 4 + 39895921 ctat i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621570 4 - 6883506 atat i dasNov3.JH568778 C 0 C 0 e cerAty1.NW_012002954v1 5635320 3 + 21915920 I a score=4095.000000 s hg38.chr21_GL383578v2_alt 11551 1 + 63917 T s panTro5.chr21 848279 1 + 33445071 t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533664 1 + 46275980 t i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445721 1 - 13858734 t i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573074 1 + 32716333 t i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642512 1 - 185818997 T i rheMac8.chr3 C 0 C 0 s chlSab2.chr2 12279800 1 - 90373283 T i chlSab2.chr2 C 0 I 1 s colAng1.NW_012116933v1 586362 1 - 3237654 T i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11418911 1 + 39895921 t i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621574 1 - 6883506 t i dasNov3.JH568778 C 0 C 0 e otoGar3.GL873528 18307317 1 - 38779656 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e macFas5.chr3 159450900 0 - 192294377 C a score=1560.000000 s hg38.chr21_GL383578v2_alt 11552 1 + 63917 A s panTro5.chr21 848280 1 + 33445071 a i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533665 1 + 46275980 a i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445722 1 - 13858734 a i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573075 1 + 32716333 a i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642513 1 - 185818997 A i rheMac8.chr3 C 0 I 36 s colAng1.NW_012116933v1 586363 1 - 3237654 A i colAng1.NW_012116933v1 C 0 I 40 s otoGar3.GL873528 18307318 1 - 38779656 g i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11418912 1 + 39895921 g i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621575 1 - 6883506 g i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12279801 1 - 90373283 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e macFas5.chr3 159450900 0 - 192294377 C a score=331231.000000 s hg38.chr21_GL383578v2_alt 11553 331 + 63917 CACCTGGGCTGGGGAGACCCACATAA-------CAAAAGAACTGAGGGTCCTCgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgcatgaatgtatgtatgtgtaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtATTCTGTTT--ccctccagcatgatggctttagggtcactgga----------------ctcagagctccacggcatatgttctggaagaggcagaaccaga---aca---------tttat-ttttctctttttctgacctagactataaatttatgcagcctcactattg-----attattt-------aa---aagagtcactaagatctgtacatacccaaggcaggggtg s panTro5.chr21 848281 325 + 33445071 cacctgggctggggagacccacataa-------caaaagaactgagggtcctcgtgtgtttgtgtatgtgtgtgtgtgcgtgtgtgtgtgt--aagtgcatgaatgtatgtatgtgtcagagtgtgtgtgtgtgtgtgtgtgtgtgt--attctgttt--ccctccagcatgatggctttagggtcactgga----------------ctcagagctccacggcatgtgttctggaagaggcagaaccaga---aca---------tttat-ttttctctttttctgacctagactataaatttatgcagcctcactattg-----attattt-------aa-----gagtcactaagatctgtacatacccaaggcaggggtg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533666 315 + 46275980 cacctgggctggggagacccacataa-------caaaagaactgagggtcctcgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgt----aagtgcatgaatgtatgtatgtgtaagagtgtgtgtgtgtgtat------------attctgttt--ccctccagcatgatggctttagggtcactgga----------------ctcagagctccacggcatatgttctggaagaggcagaaccaga---aca---------tttat-ttttctctttttctgacctagactataaatttatgcagcctcactattg-----attattt-------aa---aagagtcactaagatctgtacatacccaaggcaggggtg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 445723 330 - 13858734 cacctgggctgaggagacccacataa-------caaaagaactgagggtcctcgtgtgtttgtgtatgtgtgtgtgtgtgtgtgtgt------aagtgcatgaatctatgtatgtgtaagagtgtgtatgtgtgtgtgt----------attctgttt--ccctccagcatgatggctttagggtcaccggacttcttacacg-gtggctcagagcttcatggcatatgttctggaagaggcagaaccaga---aaa---------tttat-ttttctctttttctgacctagactataaatttatgcagcctcactattg-----attattt-------aa---aagagtcactaagatctgtacatacccaaggcaggggtg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573076 320 + 32716333 cacctgggctgggaagacccacatag-------caaaagaactgagggtcctcgtgtgtttgtgtgtgtgtgtgt------------------aagtgcatgaatgtatgtatgtgtaagagtgtgtgtgtgtgtgtgtgt--------attctgttt--ccctccagcatgatggctttagggtcactggacttcttacatg-gtggctcagagctccacggcatatgttctggaagaggcagaaccaga---aaa---------tttat-ttttctctttttctgacctagactgtaaatttatgcagcctcattattg-----attattt-------aa---aagagtcactaagatctgtacatacccaaggcaggggtg i nomLeu3.chr25 C 0 C 0 s otoGar3.GL873528 18307319 292 - 38779656 catttgggctgagaaga-ccaaatag-------caaagcagctgcagttcctctc--------------------------------------acaggaaaga------------gaaagagc-tctctttctctct------------gttctgttt---cctccaacacaatggctttagggtcattaaaatttttatgtg-atagctcagaattccaaggcatgtagtcc-acagagtgagatccaga---aagaagttttctcccct-ttcccccctttcctgaactaaactctaaattcgtgcagcatacctattg-----attctgt-------cacttaggagtcactaagatgggtacatatccaaggcaggggca i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11418913 264 + 39895921 caccag---tgggaaga------tgc-------caaaag--ctgaggctccttataccatt-------------------------------------------------------------tctgtctctctctgttctt--------tctttgtttacctctctagcacagtggcttcagggaagttggaatttgtacacg-gtggttcagagctccaaggtcaatttcc---aagag--agagccaag---ggg---------aaatt-ttatctctttttatgacatagattcaaaattcatgcattgccactgttgagtccattattt-------ag---aagagtcaccaaagtcagtgtatttccaagacgag---- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621576 287 - 6883506 cacctgagctgggagcagtcacattgtccagtttggaagagctggagcttctcatatttc---------------------------------ac-------------------------------tatttctctgtgatc--------tcttgattt--ttttccagcatggtatcctcagggttgctggacttcttacatgaatgtctcagagctacaacttgcctgtccc--aagag--agagccagatagaag---------tttatataattttttttaatgacctagacttaaaatttacccagtatcacatagg-----attctgttatttagaa---aagactcacaaatgtcaatgcatatccaagaagcggg-- i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12279801 1 - 90373283 I e colAng1.NW_012116933v1 586364 40 - 3237654 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e rheMac8.chr3 152642514 36 - 185818997 I e macFas5.chr3 159450900 0 - 192294377 C a score=18681.000000 s hg38.chr21_GL383578v2_alt 11884 6 + 63917 gactta s panTro5.chr21 848606 6 + 33445071 gactta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533981 6 + 46275980 gactta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446053 6 - 13858734 gactta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573396 6 + 32716333 gactta i nomLeu3.chr25 C 0 C 0 s calJac3.chr21 19118984 6 + 50472720 gatttt i calJac3.chr21 N 0 C 0 s saiBol1.JH378168 2471585 6 + 13128814 gatttT i saiBol1.JH378168 N 0 C 0 s otoGar3.GL873528 18307611 6 - 38779656 gactta i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419177 5 + 39895921 -actta i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621863 6 - 6883506 gactta i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12279801 1 - 90373283 I e colAng1.NW_012116933v1 586364 40 - 3237654 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e rheMac8.chr3 152642514 36 - 185818997 I e macFas5.chr3 159450900 0 - 192294377 C a score=707506.000000 s hg38.chr21_GL383578v2_alt 11890 171 + 63917 gactctac-ttcttgatgaaagcaatgtcaaagaacttgctgacatgtttTT-AAATCACCCAAAGCAGAAAGT-CTGAACTCTGGTAATTTTATTTTATGAGATAAATT-----CT---TAAT-----AATCCATTGGTGCAGAGAAAGAAATAAAGTAGCACCCCGTG-----------------------------CTTCTCACAGCTGCCTT s panTro5.chr21 848612 171 + 33445071 gactctac-ttcttgatgaaagcaatgtcaaagaacttgctgacatgttttt-aaaTCACCCAAAGCAGAAAGT-CTGAACTCTGGTAATTTTATTTTATGAGATAAATT-----CT---TAAT-----AATCCATTGGTGCAGAGAAAGAAATAAAGTAGCACCCCGTG-----------------------------CTTCTCACAGCTGCCTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14533987 171 + 46275980 gactctac-ttcttgatgaaagcaatgtcaaagaacttgctgacatgttttt-aaaTCACCCAAAGCAGAAAGT-CTGAACTCTGGTAATTTTATTTTATGAGATAAATT-----CT---TAAT-----AATCCATTGGTGCAGAGAAAGAAATAAAGTAGCACCCCGTG-----------------------------CTTCTCACAGCTGCCTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446059 171 - 13858734 gactctac-ttcttgatgaaagcaatgtcaaagaacttgctgacatgttttt-aaaTCACCCAAAGCAGAAAGT-CTGAACTCTGGTAATTTTATTTTATGAGATAAATT-----CT---TAAT-----AATCCATTGGTGCAGAGAAAGAAATAAAGTAGCACCCCATG-----------------------------CTTCTCACAGCTGCCTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573402 171 + 32716333 gactctac-ttcttgatgaaagcaatgccaaagaacttgctgacatgttttt-aaaTCACCCAAAGCAGAAAGT-CTGAACTCTAGTAATTTTATTTTATGAGATAAATT-----CT---TAAT-----AATCCATTGGTGCAGAGAAAGAAATAAAGTAGCACCCCATG-----------------------------CTTCTCACAGCTGCCTT i nomLeu3.chr25 C 0 C 0 s calJac3.chr21 19118990 201 + 50472720 gactctac-ttcttgatgaaagcaatatcaaagaacttggtgacatgtttttaaaatcaccCAAAGCAGAAAGT-CTGAACTCTGGtaattttattttatgaaataaatt-----ct---taat-----aattcattaattCAGAGAAAGAAAGAAAGTAGCACCCCATAGCTGCCTCACAGCTTTGGGATACTACTTTATTCTCACAGCTTCCTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2471591 192 + 13128814 gactctac-ttcttgatgaaagcattgtcaaaaaacttggtgacatgtatttaaaatcaccCAAAGCAGAAAGT-CTGAACTCTGGTA-----GTTTTGTGAAATAAATT-----CT---CAAT-----AAGCCATTGATTCAG----AGAAAGAAAGTAGCACGCCATGGCTGCCTCACAGCTTTGAGATACTACTTTATTCTCACAGTTGCCTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7006775 197 - 14377064 gactctac-ttcttgatgaaagcaatgtcaaagaacttggtgacatgtttttaaaatcacccacaGCAGAAAGT-CTGAACTCTGGTAATTTTATTTTATGAAATAAATT-----CT---TAAT-----AATCCATTGATTCAG----AGAAAGAAAGTAGCACCCCATAGCTGCCTCACAGCTTTGGGATACTACTTTATTCTCACAGCTGCCTT i cebCap1.NW_016107322v1 N 0 C 0 s aotNan1.NW_018487195v1 6055130 201 + 9889416 gactctac-ttcttgatgaaagcaatgtcaaagaacttgctgacatgtttttaaaatcaccCAAAGCAGAAAGT-CTGAACTCTGGTATTTTTATTTTATGAAATAAATT-----CT---TAAT-----AATCCATTGATTCAGAGAAAGAAATAAAGTAGCACCCCATAGCTGCCTCACAGCTTTGGGATACTACTTTATTCTCACAGCTGCCTT i aotNan1.NW_018487195v1 N 0 C 0 s otoGar3.GL873528 18307617 173 - 38779656 gactctac-ttcttgataagaacattgtcaaagaactttctgacatgtttta-aaaTTAATAAAACTAGAGAG---TGAACTCTGGTAATTTTATTTTATGGAATAAAGTCTTTACT---TAAG-----AATCCATTGGTTCAGAGAAAAAAA-AAAGTAGCCCTCCATA-----------------------------CTTCTCACAGCTGCCTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419182 169 + 39895921 cactttacactttcaatgagaacagtgtcaaagaacttgctggcaagcttta-aaatctc------cacaGAGT-CTGAACTCTGCTAATTTTGTTTTATGAGGCAAAGT-----CTACCTAAG-----TGCCCATTGGTTTGAAGAAAGAAACTAAGTAGCACCCCATA-----------------------------CTTCTGATACCTGCCTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 621869 165 - 6883506 aactctat-atcttgataagtgtaatgtcaaagaatttgctgacatgttttg-aaatcaccaAAACCAGAAAGTCCCAAACTCTGGTACTTTTACTTTATGAGATAAAGA-----CT---TGATCCCAGGAGTAATTGGCCCAAAGGGAAAAAAAGAT-----------------------------------------TTTCTGGCAGCTTCCTC i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12279801 1 - 90373283 I e colAng1.NW_012116933v1 586364 40 - 3237654 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e rheMac8.chr3 152642514 36 - 185818997 I e macFas5.chr3 159450900 0 - 192294377 C a score=373247.000000 s hg38.chr21_GL383578v2_alt 12061 62 + 63917 TTTGTGGCTATTCTCATAAATAATTCTACTGATAC-TCTCCTTTTCTGTAATTGATTAAAGAG------ s panTro5.chr21 848783 62 + 33445071 TTTGTGGCTATTCTCATAAATAATTCTACTGATAC-TCTCCTTTTCTGTAATTGATTAAAGAG------ i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534158 62 + 46275980 TTTGTGGCTATTCTTATAAATAATTCTACTGATAC-TCTCCTTTTCTGTAATTGATTAAAGAG------ i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446230 62 - 13858734 TTTGTGGCTATTCTCATAAATAATTCTACTGATAC-TCTCCTTTTCTGTAATTGATTAAAGAG------ i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573573 62 + 32716333 TTTGTGGCTATTCTCATAAATAATTCTACTGATAC-TCTCCTTTTCTGTAATTGATTAAAGAG------ i nomLeu3.chr25 C 0 C 0 s calJac3.chr21 19119191 62 + 50472720 TTTGTGGCCATTCTCATAAATAATTCTACAGATAT-TCTCCTTTTCTGTAATTGATTAAAGAG------ i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2471783 62 + 13128814 TTTGTGGCCATTCTCATAAATAATTCTACAGATAT-TCTCCTTTTCTGTAACTGACTAAAGAG------ i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7006972 62 - 14377064 TTTGTGGCCATTCTTATAAATAATTCTACAAATAT-TCTCCTTTTCTGTAATTGATTAAAGAG------ i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055331 61 + 9889416 TTT-TGGCCATTCTCATAAATAATTCTACAGATAT-TCTCCTTTTCTGTAATTGATTAAAGAG------ i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16819862 63 + 47401472 TTTGTGGCCATTCTCCCAAATAATTCTACTGATACTTCTCCTCTTCTGTAATTCATTAAAGAG------ i micMur3.chr31 N 0 I 147 s proCoq1.NW_012147997v1 1161021 63 - 2312742 TTTGTGGCCATTCTCCCAAATAATTCTACTGATACTTCTCCTCTTCTGTAATTCATTAAAGAG------ i proCoq1.NW_012147997v1 N 0 I 146 s otoGar3.GL873528 18307790 60 - 38779656 ---GTGGCCGTTCTCACAAATAATCTCACTGATACTTCTCCCCTTCTTTAATTCACTAAAGAG------ i otoGar3.GL873528 C 0 I 5 s canFam3.chr31 11419351 59 + 39895921 ---ATTGTCATTTTCACAAATAATTCTACAGATAT-TCTCCTCTTTTTTAATTCCATAAAGAG------ i canFam3.chr31 C 0 I 5 s dasNov3.JH568778 622034 67 - 6883506 AAAGTGGCCATTCTCAAAACTAATTATTCCAGTAC-TTTCCTCTT-TGTAATTCATAAAAGAAGAGAAG i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12279801 1 - 90373283 I e colAng1.NW_012116933v1 586364 40 - 3237654 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e rheMac8.chr3 152642514 36 - 185818997 I e macFas5.chr3 159450900 0 - 192294377 C a score=449567.000000 s hg38.chr21_GL383578v2_alt 12123 137 + 63917 ATGCTCGTTCCCAGATAAATTAAAACTCTTT--CCTTCTCATCAAAGCCTAGAGCAGCTTTGCTGGGACTTTGC-----------TCCTTCAGCCTAAAGCT----------------GTGTCCACCCT--GACAGGAGATCAGTATTTTTGCAAGAAAGGCTGCTAA s panTro5.chr21 848845 137 + 33445071 ATGCTCGTTCCCAGATAAATTAAAACTCTTT--CCTTCTCATCAAAGCCTAGAGCAGTTTTGCTGGGACTTTGC-----------TCCTTCAGCCTAAAGCT----------------GTGTCCACCCT--GACAGGAGATCAGTAATTTTGCAAGAAAGGCTGCTAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534220 137 + 46275980 ATGCTCGTTCCCAGATAAATTAAAACTCTTT--CCTTCTCATCAAAGCCTAGAGCAGCTTTGCTGGGACTTTGC-----------TCCTTCAGCCTAAAGCT----------------GTGTCCACCCT--GACAGGAGATCAGTATTTTTGCAAGAAAGGCTGCTAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446292 136 - 13858734 ATGCTCATTCCCAGATAAATTAAAACTCTTT--CCTTCTCATCAAAGCCTAGAGCAGCTTTGCT-GGACTTTGC-----------TCCTTCAGCCTAAAGCT----------------GTGTCCACCCT--GACAGGAGATCAGTATTTTTGCAAGAAAGGCTGCTAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573635 137 + 32716333 ATGCTCGTTCCCAGTTAAATTAAAACTCTTT--CCTTCTCATCAAAGCCTAGAGCAGCTTTGCTGGGACTTTGC-----------TCCTTCAGCCTAAAGCT----------------GTGTCCACCCT--GACAGGAGATCAGCATTTTTGCAAGAAAGGCTGCTAA i nomLeu3.chr25 C 0 C 0 s calJac3.chr21 19119253 122 + 50472720 GTGTAAATTCCCAAATAAATTAAAACTCTTT--CCTTCTCATCAAAACCTAGAGCAGCTTTGCTAAGACTTTGC-----------TGCTTCA--------------------------GTGTCCAC------AGTGGAGATCAGG-ATTTTACAATAAAGACTGCTAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2471845 136 + 13128814 GTGTTCATTCCCAAATACATTAAAACTCTTT--CCTTCTCATCAAAACCCAGAGCAGCTTTGCTAAGACTTTGC-----------TGCTTCGGCCCAAGGCT----------------GTGTTCACACT--GACTGGAGATCAGT-TTTTTACACTAAAGACTGCTGA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007034 136 - 14377064 GTGTTCATTCTCAAATAAATTAAAACTCTTT--CCTTCGCATTAAAACCTAGAGCAGCTTTGCTAAGACTTTGC-----------TGCTTCAGCCCAAGGTT----------------GTGTCCACACT--GACTAGAGATCAGT-TTTTTACAATAAAGACTGCTGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055392 133 + 9889416 GTGTTCATTCCCAAATAAATTAAAACTCTTG--CCTT---ATCAAAACCTAGAGCAGCTTTGCTAAGACTTTGC-----------TGCTTCAGCCCAAGGCT----------------GTGTCCACACT--GACTGGAGATCAGT-TTTTTACAATAAAGACTGCTGA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18307855 137 - 38779656 GTGCTCTTTCTCAGACACCTTAAAACTTGTCCACCTCCTCATCTAAGCCTAGACTAGCTCCCTAGGGACCCTTC-----------TCCTTCAGTTCAAAGCT----------------GTCTTTACCCT-GGGCTGGCGATCAGT-TTTTT--AAAATAGGCTGTTGA i otoGar3.GL873528 I 5 C 0 s canFam3.chr31 11419415 137 + 39895921 GTGCTCACTCTCAGACTCTTTAAAACGCTTT--CTCTCTCATCTACAACTACAACAGTTCCCCAGGGACTTTTC-----------CTCAAGGGTCCAAAGAT----------------GTCTCCACCTC-AAACTGGAGATAAGA-TTTTTACAACAAAGGCTGCTGA i canFam3.chr31 I 5 C 0 s dasNov3.JH568778 622101 168 - 6883506 GTGCTCATTTTCAGACTCCTCAAAAGTTTCTCACTTCTTAATCTAAGCTGAGAACAGTTCCCTGGGGACGTTTTTTCTGTTTGTGTTCTTTACTCTGGAACCTGTTACAGTGTAAATGGTCTTTGCTCTGGAACATATTACTAAAGTTATTACAATAAAGGCTGTTAC i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1161084 146 - 2312742 I e micMur3.chr31 16819925 147 + 47401472 I e chlSab2.chr2 12279801 1 - 90373283 I e colAng1.NW_012116933v1 586364 40 - 3237654 I e manLeu1.NW_012107264v1 607681 0 + 1337817 C e cerAty1.NW_012002954v1 5635320 3 + 21915920 I e macNem1.NW_012019910v1 5895560 0 + 9440265 C e rheMac8.chr3 152642514 36 - 185818997 I e macFas5.chr3 159450900 0 - 192294377 C a score=21840.000000 s hg38.chr21_GL383578v2_alt 12260 2 + 63917 TA s panTro5.chr21 848982 2 + 33445071 TA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534357 2 + 46275980 TA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446428 2 - 13858734 TA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573772 2 + 32716333 TA i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159450900 2 - 192294377 TA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895560 2 + 9440265 TA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635323 2 + 21915920 TA i cerAty1.NW_012002954v1 I 3 C 0 s manLeu1.NW_012107264v1 607681 2 + 1337817 TA i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19119375 2 + 50472720 TA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2471981 2 + 13128814 TA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007170 2 - 14377064 TA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055525 2 + 9889416 TA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18307992 2 - 38779656 TA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419552 2 + 39895921 TA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622269 2 - 6883506 TA i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1161084 146 - 2312742 I e micMur3.chr31 16819925 147 + 47401472 I e chlSab2.chr2 12279801 1 - 90373283 I e colAng1.NW_012116933v1 586364 40 - 3237654 I e rheMac8.chr3 152642514 36 - 185818997 I a score=79821.000000 s hg38.chr21_GL383578v2_alt 12262 50 + 63917 TAGTAGGG-TTTTTGTTTGTTTG----TTTGCTTGttttttt---------ttttttttttttt s panTro5.chr21 848984 40 + 33445071 TAGTAGGG-TTtttctttgtttg----tttgcttgttttttt---------ttt---------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534359 40 + 46275980 TAGTAGGG-tttttgtttgtttg----tttgcttgttttgtt---------ttt---------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446430 40 - 13858734 TAGTAGGG-tttttgtttgtttg----tttgcttgttttttt---------ttt---------- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573774 40 + 32716333 TAGTAAGG-TTtttgtttgtttg----tttgcttgtttggtt---------ttt---------- i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159450902 38 - 192294377 TAGTACGG-tttttgtttgtttg----tttgcttgtttgtg----------tt----------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895562 39 + 9440265 TAGTACGG-tttttgtttgtttg----tttgcttgtttgtgt---------tt----------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635325 40 + 21915920 TAGTACGG-TTtttgtttgtttg----tttgcttgtttgtGt---------ttt---------- i cerAty1.NW_012002954v1 C 0 I 16 s chlSab2.chr2 12279802 53 - 90373283 TAGTAGGG-tttttgtttgtttgtttttttgcttgtttgtgggttttttttttt---------- i chlSab2.chr2 I 1 I 5 s manLeu1.NW_012107264v1 607683 40 + 1337817 TAGTACGG-tttttgtttgtttg----tttgcttgtttgtgg---------ttt---------- i manLeu1.NW_012107264v1 C 0 I 5 s calJac3.chr21 19119377 22 + 50472720 CAGTAGGG----------TTTTT----TTTGCTTGT---------------------------- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2471983 32 + 13128814 CAGTAGCGtttgttttttttttt----ttttcttgt---------------------------- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007172 21 - 14377064 CTGTAGGG----------TTTTT----TTTGCTTG----------------------------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055527 20 + 9889416 CGGTAGGG-----------TTTT----TTTGCTTG----------------------------- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18307994 21 - 38779656 ---TAGGT-TTTTTTTGCATTTT----TT----------------------------------- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419554 16 + 39895921 ----------TTGTTTTTGTTTG----TTT---------------------------------- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1161084 146 - 2312742 I e micMur3.chr31 16819925 147 + 47401472 I e dasNov3.JH568778 622271 0 - 6883506 C e colAng1.NW_012116933v1 586364 40 - 3237654 I e rheMac8.chr3 152642514 36 - 185818997 I a score=4095.000000 s hg38.chr21_GL383578v2_alt 12312 1 + 63917 t s panPan2.chr21 14534399 1 + 46275980 t i panPan2.chr21 C 0 C 0 s rheMac8.chr3 152642550 1 - 185818997 t i rheMac8.chr3 I 36 C 0 s macFas5.chr3 159450940 1 - 192294377 t i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895601 1 + 9440265 t i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635381 1 + 21915920 t i cerAty1.NW_012002954v1 I 16 C 0 s chlSab2.chr2 12279860 1 - 90373283 t i chlSab2.chr2 I 5 C 0 s manLeu1.NW_012107264v1 607728 1 + 1337817 t i manLeu1.NW_012107264v1 I 5 C 0 s calJac3.chr21 19119399 1 + 50472720 T i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472015 1 + 13128814 t i saiBol1.JH378168 C 0 C 0 e proCoq1.NW_012147997v1 1161084 146 - 2312742 I e micMur3.chr31 16819925 147 + 47401472 I e aotNan1.NW_018487195v1 6055547 0 + 9889416 C e cebCap1.NW_016107322v1 7007193 0 - 14377064 C e otoGar3.GL873528 18308015 0 - 38779656 C e dasNov3.JH568778 622271 0 - 6883506 C e canFam3.chr31 11419570 0 + 39895921 C e colAng1.NW_012116933v1 586364 40 - 3237654 I e nomLeu3.chr25 1573814 0 + 32716333 C e gorGor5.CYUI01015003v1 446470 0 - 13858734 C e panTro5.chr21 849024 0 + 33445071 C a score=6630.000000 s hg38.chr21_GL383578v2_alt 12313 3 + 63917 ttt s panPan2.chr21 14534400 3 + 46275980 tgt i panPan2.chr21 C 0 C 0 s nomLeu3.chr25 1573814 1 + 32716333 --t i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642551 3 - 185818997 ttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450941 3 - 192294377 ttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895602 3 + 9440265 ttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635382 3 + 21915920 ttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279861 3 - 90373283 ttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607729 3 + 1337817 ttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586404 3 - 3237654 ttt i colAng1.NW_012116933v1 I 40 C 0 s calJac3.chr21 19119400 2 + 50472720 TG- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472016 3 + 13128814 tgt i saiBol1.JH378168 C 0 C 0 s dasNov3.JH568778 622271 3 - 6883506 TTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1161084 146 - 2312742 I e micMur3.chr31 16819925 147 + 47401472 I e aotNan1.NW_018487195v1 6055547 0 + 9889416 C e cebCap1.NW_016107322v1 7007193 0 - 14377064 C e otoGar3.GL873528 18308015 0 - 38779656 C e canFam3.chr31 11419570 0 + 39895921 C e gorGor5.CYUI01015003v1 446470 0 - 13858734 C e panTro5.chr21 849024 0 + 33445071 C a score=917864.000000 s hg38.chr21_GL383578v2_alt 12316 75 + 63917 ttttttGTATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT s panTro5.chr21 849024 69 + 33445071 ------gtattctgctttttcattgtGCTTTAATGTAAATTACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534403 75 + 46275980 ttttttgtATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446470 74 - 13858734 -tttttgtATTCTGCTCTTTCATTGTACTTTAATGTAAATTACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573815 75 + 32716333 ttttttgtATTCTGCTCTTTCATTGTGCTTTGATGTAAATTACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642554 75 - 185818997 ttttttgCATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGCATTTC--ACTAGCTGT---ACT------------------------------------------AAGCAC--TTTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159450944 75 - 192294377 ttttttgCATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGCATTTC--ACTAGCTGT---ACT------------------------------------------AAGCAC--TTTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895605 75 + 9440265 ttttttgCATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGCATTTC--ACTAGCTGT---ACT------------------------------------------AAGCAC--TTTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635385 117 + 21915920 ttttttGCATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGCATTTC--ACTAGCTGT---ACTAAGCACTTTTTTCCCTCCTTGGTATTCATCAAACCCAATACTAAGCAC--TTTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279864 75 - 90373283 ttttttGTATTCTGCTCTTTCATTGTGCTTTAACGTAAATTACTGGCATTTC--ACTCGCTGT---ACT------------------------------------------AAGCAC--TTTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607732 75 + 1337817 tttttttCATTCTGCTCTTTCATTGTGCTTTAATGTAAATTACTGGCATTTC--ACTAGCTGT---ACC------------------------------------------AGGCAC--TTTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586407 75 - 3237654 ttttttgtATTCTGCTCTTTCATCGTACTTTAATGTAAATTACTGGCATTTC--ACTAGCTGT---GCT------------------------------------------AAGCAC--ATTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119402 59 + 50472720 TTTTTTGTATTCTTCTCTTTCATTGCACTTTAATGTAAATAACTGGTATTTC--AC---------------------------------------------------------------TTTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472019 77 + 13128814 ttttttATATTCTTCTCTTTCATTGCACTTTAATGTAAATAACTGGCATTTC--ACTACTTGT---ACT------------------------------------------GAGCACTTTTTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007193 75 - 14377064 TTTTTTGTATTCTTTCCTTTCATTGCACTTTAATGTAAATAACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055547 75 + 9889416 TTTTTTGTATTCTTCTCTTTCATTGCACTTTAATGTAAATAACTGGTATTTC--ACTAGTTGT---ACT------------------------------------------GAGCAC--TTTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16820072 78 + 47401472 TTTTTTGTATTTTTCTCCTACATTGAACTTTAATGTAAATTATTGATATTTC--ACTAGTTATTATACT------------------------------------------GAGCAC--TTTTT i micMur3.chr31 I 147 I 143 s proCoq1.NW_012147997v1 1161230 78 - 2312742 TTTTTTGTATTTTTCTCCTTCATTGAGCTTTAATGTAAATTATTGATATTTC--ACTAGTTGTTATACT------------------------------------------GAGCAC--TTTTT i proCoq1.NW_012147997v1 I 146 I 119 s otoGar3.GL873528 18308015 64 - 38779656 --------------CTCTTTTATTGAGCTTTAATATAAATTTTTGATATTTC--ACTAGTTATTACAGT------------------------------------------GAACAC--TGTTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419570 70 + 39895921 -----TGTATTTTGCTGTTTCATCAAGCTTTAACATTAA--ATTAGTATCCCTAAATTATTGT---ACT------------------------------------------GAGCAC--TTTTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622274 65 - 6883506 TTTTGTGTA--------CTTCATCAAGCTTTAACAGTAGT-----GTACCTT--ATTATTTACCATATT------------------------------------------GACCAC--TTTTT i dasNov3.JH568778 C 0 C 0 a score=822191.000000 s hg38.chr21_GL383578v2_alt 12391 73 + 63917 TGCCTCCTTGGT----ATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTG---CAAAACCAGTGACTAAGA s panTro5.chr21 849093 73 + 33445071 TGCCTCCTTGGT----ATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTG---CAAAACCAGTGACTAAGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534478 73 + 46275980 TGCCTCCTTGGT----ATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTG---CAAAACCAGTGACTAAGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446544 73 - 13858734 TGCCTCCTTGGT----ATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTG---CAAAACCAGTGACTAAGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573890 73 + 32716333 TGCCTCCTTGGT----ATCAAACCCAATATATTAG-TCTTTGGATTACCTTTGCCCTCTG---CAAAACCAGTGACTAAGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642629 77 - 185818997 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTA---CAAAACCAGGGACTAAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451019 77 - 192294377 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTA---CAAAACCAGGGACTAAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895680 77 + 9440265 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTA---CAAAACCAGGGACTAAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635502 77 + 21915920 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTA---CAAAACCAGGGACTAACA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12279939 77 - 90373283 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCGCTA---CAAAACCAGGGACTAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607807 77 + 1337817 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTA---CAAAACCAGGGACTAAGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586482 77 - 3237654 TCCCTCCTTGGTATTCATCAAACCCAATATATTAG-TCTTTGGATTACATTTGCCCTCTA---CAAAACGAGGGACTAAGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119461 78 + 50472720 TGCCTCCTTGGTATTTATCAAAACCAATACATTAGTTTTTTGGATTATATTTGCCCTATG---CAAAGCCAGTGGCTAAGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472096 77 + 13128814 TGCCTCCTTGGTACTTGTCAAACCCAATACATTAG-TTTTTGGATTACATTTGCCCTACG---CAAAGCCAGTGACTAAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007268 77 - 14377064 TGCCTCCTTGGTATTTATCAAACCCAATGCATTAG-TTTTTGGATTACATTTGCCCTATG---CAAAGCCAGTGGCTAAGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055622 77 + 9889416 TGCCTCCTTGGTATTTATTAAACCCAATACATTAG-TTTTTGGATTACATTTGCCCTATG---CAAAGCCAGTGGCTAAGA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18308079 73 - 38779656 -GACTATTTAGTACTCATCGTAACCAATACATTAG-TCTCTAGGTTGCATTTGCTTTCTC---CAAAATAAATAAC---AA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419640 76 + 39895921 -GACTCCTTGTTATACAGCATACTTGATATGTTTG-TCTCTGGATTGCATTTGCTCTCTC---CAGGACCAGTAACTAAAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622339 71 - 6883506 TGACTTCATGCTATTCATCATACTGGTTATATTAG-AATCTGAATTGGGTATATTCTCTATGCCAAAGATGG--------- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I a score=210961.000000 s hg38.chr21_GL383578v2_alt 12464 17 + 63917 GCTAAAGAGCAGACATA s panTro5.chr21 849166 17 + 33445071 GCTAAAGAGCAGACATA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534551 17 + 46275980 GCTAAAGAGCAGACATA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446617 17 - 13858734 GCTAAAGAGCAGACATA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573963 17 + 32716333 TCTAAAGAGCAGACATA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642706 17 - 185818997 GTTAAAGAGCAGACATA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451096 17 - 192294377 GCTAAAGAGCAGACATA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895757 17 + 9440265 GTTAAAGAGCAGACATA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635579 17 + 21915920 GCTAAAGAGCAGACATA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280016 17 - 90373283 GCTAAAGAGCAGACATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607884 17 + 1337817 GCTAAAGAGCAGACATA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586559 17 - 3237654 GCTAAAGAGCAGACATA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119539 17 + 50472720 GCTAAAGAGCAGAAATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472173 17 + 13128814 GCTAAAGAGCAGAAATA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007345 17 - 14377064 GCTAAAGAGCAGAAATA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055699 17 + 9889416 GCTAAAGAGCAGAAATA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18308152 17 - 38779656 GCTAAAGAACAGAAATG i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 622410 17 - 6883506 GCCAAAGAAAAGAAATA i dasNov3.JH568778 C 0 I 200 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I e canFam3.chr31 11419716 0 + 39895921 C a score=1229414.000000 s hg38.chr21_GL383578v2_alt 12481 129 + 63917 ggccaagaatggtggctcacgcctataatcctagcactttgggaggctgaggtggggggatcactt-gaagtcaggagttcaagaccaggctgaccaacatggtgaaaccctgtctctact-aaaaataca s panTro5.chr21 849183 129 + 33445071 ggccaagaatggtggctcacgcctgtaatcctagcactttgggaggctgaggtggggggatcactt-gaagtcaggaattcaagaccaggctgaccaacatggtgaaaccctgtctctact-aaaaataca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534568 129 + 46275980 ggccaagaatggtggctcacgcctgtaatcctagccctttgggaggctgaggtggggggatcactt-gaagtcaggagttcaagaccaggctgaccaacatggtgaaaccctgtctctact-aaaaataca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446634 130 - 13858734 ggccaagaatggtggttcacgcctgtaatcctagcactttgggaggctgaggtggggggatcacttggaagtcaggagttcaagaccagcctgaccaacatggtgaaaccctgtctctact-aaaaataca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1573980 129 + 32716333 GGCCAAAAATggtagcttacacctgtaatcctagcactttgggaggctgaggtggggggatcactt-gaagtcaggagttcaagaccagcctgaccaacatggtgaaaccccgtctctact-aaaaataca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642723 129 - 185818997 ggccaagaactgtggctcacgcctgtaatcctagcactttgggaggctgaggtgggcagatcactt-gaggtcaggagttcaagaccagcctggccaacatgatgaagccctgtctctact-gaaaataca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451113 129 - 192294377 ggccaagaactgtggctcacgcttgtaatcctagcactttgggaggctgaggtgggcagatcactt-gaggtcaggagttcaagaccagcctggccaacatgatgaagccctgtctctact-gaaaataca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895774 129 + 9440265 ggccaagaactgtggctcacgcctgtaatcctagcactttgggaggctgaggtgggcagatcactt-gaggtcaggagttcaagaccagcctggccaacatgatgaagccctgtctctact-gaaaataca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635596 129 + 21915920 ggccaagaactgtggctcacgcctgtaatcctagcactttgggaggctgaggtgtgcagatcactt-gaggtcaggagttcaagaccagcctggccaacatggtgaagccctgtctctact-gaaaataca i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280033 129 - 90373283 GGCTAAGAACTgtggctcacgcctgtaatcttagcactttgggaggctgaagtgggcggatcactt-gaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctact-aaaaataca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 607901 129 + 1337817 ggccaagaactgtggctcacgcctgtaatcctagcactttgggaggctgaggtgggcagatcactt-gaggtcaggagttcaagaccagcctggccaacatggtgaagccctgtctctact-gaaaataca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586576 129 - 3237654 ggccaagaactgtggctcacgcctgtaatcctagcaccttgggaggctgaggtgggcagatcactt-gaggtcaggagttcaagaccagcatggccaacatggtgaaaccctgtctctact-aaaaataca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119556 127 + 50472720 ggccaagaacggtggcttacacctgtaatcctagtactctgggaggct--agtgggtgaatcacat-gaggtcagaagtttaagaccagcctagccaacatgatgcaaccctgtttttact-aaaaataca i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472190 128 + 13128814 ggccaagaatggtggcttacacctgtaatctcagtactctgggaggct--ggtgggtgaatcactt-gaggttaggagtttaagacgagcctggccaagatgatgaaaccctgtttttactaaaaaatata i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007362 127 - 14377064 ggccaagaacggtggcttacacctgtaatcctagtactctgggaggct--agtgggtgaatcactt-gaggtcaggagtttaagaccagcctggccaacatgatgaaaccctatttttact-aaaaataca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055716 127 + 9889416 ggccaagaacagtggcttacacctgtaatcctagtactctgggaggct--agtgggtgaatcactt-gaggtcaggcgtttaagaccagcctggccaacatgatgaaaccctgtttttact-aaaaataca i aotNan1.NW_018487195v1 C 0 C 0 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I e otoGar3.GL873528 18308169 0 - 38779656 C e dasNov3.JH568778 622427 200 - 6883506 I e canFam3.chr31 11419716 0 + 39895921 C a score=76918.000000 s hg38.chr21_GL383578v2_alt 12610 7 + 63917 aaaatta s panTro5.chr21 849312 7 + 33445071 aaaatta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534697 7 + 46275980 aaaatta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446764 7 - 13858734 aaaatta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574109 7 + 32716333 aaaatta i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642852 7 - 185818997 agaatta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451242 7 - 192294377 agaatta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895903 7 + 9440265 agaatta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635725 7 + 21915920 aaaatta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280162 7 - 90373283 aaaattt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608030 7 + 1337817 agaatta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586705 7 - 3237654 aaaatta i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119683 7 + 50472720 aaaatta i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472318 7 + 13128814 aaaatta i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007489 7 - 14377064 aaaatta i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055843 7 + 9889416 aaaatta i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11419716 7 + 39895921 AAAATTA i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I e otoGar3.GL873528 18308169 0 - 38779656 C e dasNov3.JH568778 622427 200 - 6883506 I a score=899094.000000 s hg38.chr21_GL383578v2_alt 12617 118 + 63917 gctggaaatcacatgaacccacgtggcggaggtta-------ccagtattgcaccactgcactccaacctggctgacagagcaagactccatctaaaaa----aa----aaaaaaaaaaaaaaCGGAGAACGA s panTro5.chr21 849319 117 + 33445071 gctggaaatcacatgaacccaggtggcggaggtta-------ccagtattgcaccactgcactccaacctggctgacagagcaagactccatctaaaaa----aa----aaaaaaaaaaaaaa-GGAGAACGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534704 116 + 46275980 gctggaaatcacatgaacccaggtggcagaggtta-------ccagtattgcaccactgcactccaacctggctgactgagcaagactccatctaaaaa----aa----aaaaaaaaaaaaC--GAAGAACGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446771 107 - 13858734 gctggaaatcacatgaacccaggtggcggaggtta-------ccaatattgcaccactgcactccaacctggctgacagagcaagactccatcttaaaa----aa----aaaa-----------GGAGAACGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574116 103 + 32716333 gctggaaatcgcatgaacccaggtggtggaggtta-------ccaatattgcaccactgcactccaacctgggtgacagagcaagactccatctaaaaa----aa-------------------ggagaaaGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642859 110 - 185818997 gctggaaatctcatggactcagatggcggaggtta-------ccaatattgcaccactgcactccaacctggatgacacagcaagactccatctaaaaa----aa----aaagaaa--------ggagaaaGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451249 110 - 192294377 gctggaaatctcatggactcagatggcggaggtta-------ccaatattgcaccactgcactccaacctggatgacacagcaagactccatctaaaaa----aa----aaagaaa--------ggagaaaGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5895910 110 + 9440265 gctgaaaatctcatggactcagatggcggaggtta-------ccaatattgcaccactgcactccaacctggatgacacagcaagactccatctaaaaa----aa----aaagaaa--------ggagaaaGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635732 109 + 21915920 gctggaaatctcatggactcagatggcggaggtta-------ccaatattgcaccactgcactccaacctggatgacagagcaagactccatctaaaaa----aa----aaa-aaa--------ggagaaaGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280169 109 - 90373283 gctggaaatctcatgaacccagatggcggaggtta-------ccaatattgcagcactgcactccgacctgggtgacagagcaagactccatctaaaaa----aa----aaa-aaa--------gaagaaaGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608037 108 + 1337817 gctggaaatctcatggactcagatggcggaggtta-------ccaatattgcaccactgcactccaacctggatgacagagcaagactccatct-aaaa----aa----aaa-aaa--------ggagaaaGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586712 110 - 3237654 cctggaaatctcatgaacccagatggtggaggtta-------ccaatattgcaccactgcactccaacctgggtgacagagcaagactctatctaaaaa----aa----aaaaaaa--------ggagaaaGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119690 119 + 50472720 gccgaaaatctcttgaacccaggtggcagaggttagagtgagccaagattgtcccactgcactccaacctgggtgacagagcaagactccatctcaaaa----aaca--aaaaaaG--------GCAGAAAGC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472325 125 + 13128814 gctgaaaatctcttgaacccaggtggcagagtttagagtgagccaagattgttccactgcactccaacctgagtgacagagcaaggctccatctcaaaaaaacaacaacaaaaaaG--------GCAGAAAGC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007496 115 - 14377064 gctgaaaatctcttgaacccaggtggcagaggttagagtgagccaagattgtcccattgcactccaacctgggtaacagagcaatactccatctcaaaa----aGCA------AAG--------GCAGAAAGC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055850 119 + 9889416 gctgaaaatctcttgaacccaggtggcagaggttagagtgagccaagattgtcccacttcactccaacctgggtgacagagcaagactccatctcgaaa----aaCA--AAAAAAG--------GCAGAAAAC i aotNan1.NW_018487195v1 C 0 C 0 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I e otoGar3.GL873528 18308169 0 - 38779656 C e dasNov3.JH568778 622427 200 - 6883506 I e canFam3.chr31 11419723 0 + 39895921 C a score=9284.000000 s hg38.chr21_GL383578v2_alt 12735 2 + 63917 TC s panTro5.chr21 849436 2 + 33445071 TC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534820 2 + 46275980 TC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446878 2 - 13858734 TC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574219 2 + 32716333 TC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642969 2 - 185818997 TT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451359 2 - 192294377 TT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896020 2 + 9440265 TT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635841 2 + 21915920 TT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280278 2 - 90373283 TC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608145 2 + 1337817 TT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586822 2 - 3237654 TC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119809 2 + 50472720 TA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472450 2 + 13128814 TA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007611 2 - 14377064 TA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055969 2 + 9889416 TA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18308169 2 - 38779656 TC i otoGar3.GL873528 C 0 C 0 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I e canFam3.chr31 11419723 0 + 39895921 C a score=299727.000000 s hg38.chr21_GL383578v2_alt 12737 26 + 63917 AGTGCCATTGCCATCTGACTT-ATAAG s panTro5.chr21 849438 26 + 33445071 AGTGCCATTGCCATCTGACTT-ATAAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534822 26 + 46275980 AGTGCCATTGCCATCTGACTT-ATAAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446880 26 - 13858734 AGTGCCATTGCCATCTGACTT-ATAAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574221 26 + 32716333 AGTGCCATTGCCATTGGACTT-ATAAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642971 27 - 185818997 AGTGCCATTGCCATCTTACCTCATAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451361 27 - 192294377 AGTGCCATTGCCATCTTACCTCATAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896022 27 + 9440265 AGTGCCATTGCCATCTTACCTCATAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635843 27 + 21915920 AGTACCATTGCCATCTTACTTCATAAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280280 27 - 90373283 AGTGCCATTGCCATCTTACTTCATAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608147 27 + 1337817 AGTGCCATTGCCATCTTACTTCATAAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586824 27 - 3237654 AGTGCCATTGCCATCTTACTTCATAAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119811 27 + 50472720 AGTGCCATTGCCATCTTACTTCATAAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472452 27 + 13128814 AGTGCCATTGCCATCTTACTTCATAAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007613 27 - 14377064 GGTGCCATTGCCATCTTACTTCATAAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055971 27 + 9889416 AGTGCCATTGCCATCTTACTTCATAAG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18308171 27 - 38779656 AGTGCTATTGCCATCTCACTTAATAGA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419723 26 + 39895921 AGTGCCATAGTCATCTTACTTCATAG- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1161308 119 - 2312742 I e micMur3.chr31 16820150 143 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=1034264.000000 s hg38.chr21_GL383578v2_alt 12763 72 + 63917 CATAATTCCATCTCAAACAGTGCTCCTCTTCAATGAAAACAAACTAAATGCACCTTGTGCCAAAGTGTAGTG s panTro5.chr21 849464 72 + 33445071 CATAATTCCATCTCAAACAGTGCTCCTCTTCAATGAAAACAAACTAAATGCACCTTGTGCCAAAGTGTAGTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534848 72 + 46275980 CATAATTCCATCTCAAACAGTGCTCCTCCTCAATGAAAACAAACTAAATGCACCTTGTGCCAAAGTGTAGTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446906 72 - 13858734 CATAATTCTATCTCAAACAGTGCTCCTCTTCAATGAAAACAAACTAAATGCACCTTGTGCCAAAGTGTAGTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574247 72 + 32716333 CATAATTCTATCTCAAACAGTGCTCCTCTTCAATGGAAACAAACTAAATGCACCTTGTGCCAAAGTGTAGTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152642998 72 - 185818997 CATAATTCTGTCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGCACCTTGTGACAAAGTGTAGTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451388 72 - 192294377 CATAATTCTGTCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGCACCTTGTGACAAAGTGTAGTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896049 72 + 9440265 CATAATTCTGTCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGTACCTTGTGACAAAGTGTAGTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635870 72 + 21915920 CATAATTCTGTCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGCACCTTGTGACAAAATGTAGTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280307 72 - 90373283 CATAATTCTATCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGCACCTTGTGACAAAGTGTGGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608174 72 + 1337817 CATAATTCTGTCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGCACCTTGTGACAAAGTGTAGTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586851 72 - 3237654 CATAATTCTATCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATGCACCTTGTGACAAAGTGTGGTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119838 72 + 50472720 CATAATTCCACCTCGAACGCTGCTCCTTTTCAGTGAAAACAAACTAAATACACCTTGTGCTAAAGTGTAGTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472479 72 + 13128814 CATAATTCTACCTCAAACATTGCTCCTCTTCAATGAAAACAAACTAAATACACCTTGTGCCAAAGTGTACTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007640 72 - 14377064 CATAATTCTACCTCAAACATTGCTCCTCTTCAATGAAAACAAACTGAATACACCTTGTGGCAAAGTGTAGTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6055998 72 + 9889416 CATAATTCTACCTCAAACACTGCTCCTCTTCAATGAAAACAAACTAAATACACCTTGTGCCAAAGTGTGGTG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16820293 72 + 47401472 CATAATTCTATCTCAAACATTGCTCCTCTTCAATGAAAACAAACTACATACAGCTTATGCCAAAGTGTGGTG i micMur3.chr31 I 143 I 504 s proCoq1.NW_012147997v1 1161427 72 - 2312742 CATAATTCTATCTCCGACATTGCTCCTCTTCAACGAAAACAAACTACATGCAGCTTATGCCAAAGTGTGGTG i proCoq1.NW_012147997v1 I 119 I 300 s otoGar3.GL873528 18308198 72 - 38779656 TGTAATTCTCCTTCAAACATTGCTCCACTTCAATGAAAACAAACTACATAGAGCTTATGCCAAAGAGTGGCG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11419749 65 + 39895921 -ACAATTCTGCTTCAAATATTGTTCCACCTACATGAAAACAA-----ATCCAGCTTATGTCAAAGTATGGT- i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 622427 200 - 6883506 I a score=2351832.000000 s hg38.chr21_GL383578v2_alt 12835 224 + 63917 ATGTGCCCCTCT-TGTTAGTGTACATGCTGAAGACA--GTA--TCTGTTTTTCCCACT------------------------GTAGCTCTA-TTTTTTACCC-------TAC-------CTTGGAATTATGCTATtaacttttctattctctt-tgattataataggattctgataactttaaaactcaaaat-a-gtctcactttagtaatagattcaacctagtgtattcacatgaactcttattttatatagagcaaaataacttgtt- s panTro5.chr21 849536 224 + 33445071 ATGTGCCCCTCT-TGTTAGTGTACATGCTGAAGACA--GTA--TCTGTTTTTCCCACT------------------------GTAGCTCTA-TTTTTTACCC-------TAC-------CTTGGAATTATGCTATtaacttttctattctctt-tgattataataggattctgataactttaaaactcaaaat-a-gtctcactttagtaatagattcaatctagtgtattcacatgaactcttattttatatagagcaaaataacttgtt- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14534920 224 + 46275980 ATGTGCCCCTCT-TGTTAGTGTACATGCTGAAGACA--GTA--TCTGTTTTTCCCACT------------------------GTTGCTCTA-TTTTTTACCC-------TAC-------CTTGGAATTATGCTATtaacttttctattctctt-tgattataataggattctgataactttaaaactcaaaat-a-gtctcactttagtaatagattcaatctagtgtattcacatgaactcttattttatatagagcaaaataacttgtt- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 446978 224 - 13858734 ATGTGCCCCTCT-TGTTAGTGTACATGCTGAAGACA--GTA--TCTGTTTTTCCCACT------------------------GTAGCTCTA-TTTTTTACCC-------TAT-------CTTGGAATTATGCTATtaacttttctattctctt-tgattataataggattctgataactttaaaactcaaaat-a-gtctgactttagtaatagattcaatctagtgtattcatatgaactcttattttatatagagcaaaataacttgtt- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574319 224 + 32716333 ATGTACCCCTCT-TGTTAGTGTACATGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------GTAGCTCTA-TTTTTTACCC-------TAA-------CTTGGAATTATGCTATtaacttttctattctctt-tgattataataggactctgataactttaaaactcaaaat-a-gtctcactttagaaatagtttcaatctagtgtattaatatgaactcttattttatatagagcaaaataacttgtt- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643070 224 - 185818997 ATGTGCCCCTCT-TCTTAGTGTACGTGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------ACAGCGCTA-TTTTTTACCC-------TGC-------CTTGGAGTTATGCTATtaacttttctattccctt-tgattataatcggactctgataactttaaaactcaaaat-a-atctcattttagtaatagcttcaatctagtgtattaatatgaactcttgttttatatagagcaaaataacttgtt- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451460 224 - 192294377 ATGTGCCCCTCT-TCTTAGTGTACGTGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------ACAGCGCTA-TTTTTTACCC-------TGC-------CTTGGAGTTATGCTATTAACTTTTCTATTCCCTT-TGATTATAATCGGACTCTGATAACTTTAAAACTCAAAAT-A-ATCTCATTTTAGTAATAGATTCAATCTAGTGTATTAATATGAACTCTTATTTTATATAGAGCAAAATAACTTGTT- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896121 219 + 9440265 ATGTGCCCCTCT-TCTTAGTGTACGTGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------ACAGCGCTA-TTTTTTACAC-------TGC-------CTTGGAGTTATGCTATtaacttttctattccctt-tgattataatcggactctgataactttaaaactcaaaat-a-atctcattttagtaatagattcaatctagtgtattaatatgaactc-----ttatatagagcaaaataacttgtt- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5635942 224 + 21915920 ATGTGCCCCTCT-TCTTAGTGTACGTGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------ACAGCGCTA-TTTTTTACCC-------TGC-------CTTGGAGTTATGCTATtaacttttctattccctt-tgattatagtcggactctgataactttaaaactcaaaat-a-atctcattttagtaatagattcaatctagtgtattaatatgaactcttagtttatatagagcaaaataacttgtt- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280379 225 - 90373283 ATGTGTCCCTCT-TCTTTGTGTACGTGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------ACAGTGCTATTTTTTTACCC-------TGC-------CTTGAAGTTATGCTATTAACTTTTCTATTCCCTT-TGATTATAATCGGACTCTGATAAATTTAAAACTCAAAAT-A-ATCTCATTTTAGTAACAGATTCAATCTAGTGTATTAATATGAACTCTTATTTTATATAGAGCAAAATAACTTGTT- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608246 224 + 1337817 ATGTGCCCCTCT-TCTTAGTGTATGTGCTGAAGACA--ATA--TCTGTTTTTCCCACT------------------------ACGGCGCTA-TTTTTTACCC-------TGC-------CTTGGAGTTATGCTATtaacttttctattccctt-tgattataatcggactctgataactttaaaactcaaaat-a-atctcattttagtaatagattcaatctagtgtattaatatgaactcttattttatatagagcaaaataacttgtt- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 586923 224 - 3237654 ATGTGCCCCTCT-TCTTAGTGTGTATGCTGAAGACA--ATA--TCTTTTTTTACCACT------------------------ACAGTGCTA-TTTTTTACCC-------TGC-------CTTGGAGTTATGCTATtaacttttctattccctt-tgattataatcggactctgataactttaaaactcaaaat-a-atctcattttagtaatagattaaatctagtgtattaatatgaactcttattttatatagagaaaaatagcttgtt- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19119910 222 + 50472720 ATGTCCC-CTCT-TCTTAGTGTGCATGCTGAAGACA--GTA--TCTGTTTCTCCCTCT------------------------TTAGCCCTA-TTTTTTACCC-------TAC-------CTTGGAATTACACTG-TAACTTTTATATTTtctt-tgattatagaaggactctggtaactttcaagctcaaaac-a-gtctcatttttgtaatagattcgatctagtgtattcatgtgaagtcttattttatataaagcaaaataacttctt- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472551 223 + 13128814 ATGTCCCACTCT-TCTTAGTGTGCATGCTGAAGACA--GTA--TCTGCTTCTCATTCT------------------------TTAGCTCTA-TTTTGTACCC-------TAC-------CCTGGAATTACActa-taacttttctgttctctt-tgattataacaggactctgataactttcaagctcaaaac-a-gtctcatttttgtaatagattcgatctagtgtattcatgtgaactcttattttatataaagcaaaataacttctt- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007712 223 - 14377064 ATGTCCCCCTCT-TCTTAATGTGCATGCTGAAGACA--GTA--TCTGTTTCTCCCTCT------------------------TTAGCTCTA-TTTTTTACCT-------TAC-------CTTGGAATTACActa-taacttttctattctctc-tgattataataggactctgataactttcaagctcaaaac-a-gtctcatttttgtaatagattcgatctagtgtattcatgtgaactcttattttatatagagcaaaatagcttctt- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056070 223 + 9889416 ATGTCCCCCTCT-TCTTAGTGTGCATGCTGAAGACA--GTA--TCTGTTTCTCTCTCT------------------------TTAGCTCTT-TTTTTCACCC-------TAC-------CTTGGAATTACActa-taacttttctattctctt-tgattataataggactctgataactttcaagctcaaaac-a-gtctcatttttgtcatagatttgatctagtgtattcatgtgaactcttattttatataaagcaaaataacttgct- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18308270 229 - 38779656 GCATGCACTTGT-TCTCAGGGAGTGTACTGAGGACACCTCA--TCTGTTTCTCCCTGT------------------------GCAGTTCTG-TTTTTCACCC-------TGCCTGATTTCTTGTATTTATCCTA-TAAGTTTTCTATTCTTTT-TTACTATAATTGAACTCTAATCACCTTCAAACTCAAAAA-GTGTCTCATCTTAGCAATCGATTCAATCCCGTGTATTAATATAAACTC----TTCAGATATAGCTAAATAACACTTC- i otoGar3.GL873528 C 0 I 1980 s canFam3.chr31 11419814 248 + 39895921 ATGGGCATCTCTCCCTCGGGGTGCATGCCAAAGACA--CTATTTCTGtgtcttctactgtccctttaaaactactcagttaagtggctcta-ttttttacccaatttgatac-------cttgg-------------acttttctatttttttctgattataaaagaactctgatcactttcagactcaaaatca-gccttgttttagtaatagattcaatccagagttttaatataaattcttacttcatttatagctaactaacctctct i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1161499 300 - 2312742 I e micMur3.chr31 16820365 504 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=681401.000000 s hg38.chr21_GL383578v2_alt 13059 71 + 63917 cagctctggattgctacagcctggaagccacattatgaatgggatgaaagatttgtc-------tttgtatttttatc s panTro5.chr21 849760 71 + 33445071 cagctctggattgctacagcctggaagccacattatgaatgggatgaaagatttgtc-------tttgtatttttatc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535144 71 + 46275980 cagctctggattgctacagcctggaagtcacattatgaatgggatgaaagatttgtc-------tttgtatttttatc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447202 71 - 13858734 cagctctggattgctacagcctggaagccacattatgaatggggtgacagatttgtc-------tttgtatttttctc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574543 71 + 32716333 cagctctggattgctacagcctggaagccacattatgaatggcgtgacagatttgtc-------tttgtatttttctc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643294 70 - 185818997 cag-tttgggttgctgcagcctggaggccacattatgaatggggtgacagatttgtc-------tttgtacttttctc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451684 70 - 192294377 CAG-TTTGGGTTGCTGCAGCCTGGAGGCCACATTATGAATGGGGTGACAGATTTGTC-------TTTGTACTTTTCTC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896340 70 + 9440265 cag-tttgggttgctgcagcatggaggccacattatgaatggggtgacagatttgtc-------tttgtacttttctc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636166 70 + 21915920 cag-ttcgggttgctgcagcctggaggccacattatgaatggagtgacagatttgtc-------tttgtatttttctc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280604 70 - 90373283 CAG-TTCAGGTTGCTGCAGCCTGGAGGCCACATTATGAATGGGGTGACAGATTTGTC-------TTTGTATTTTTCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608470 70 + 1337817 cag-ttcgggttgctgcagcctggaggccacattatgaatggagtgacagatttgtc-------tttgtatttttctc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587147 70 - 3237654 cag-tttgggttgctgcagcctggaggccacattatgaatggggtgacagatttgtc-------tttgtatttttctc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120132 69 + 50472720 cagctctgcattgctgcagcctggaagccacaatgtgaatagagtgagggatttgtc---------tttgtatttttc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472774 71 + 13128814 cagctctgtattgctacagcctggaagccacaatgtgaatagagtgagggatttgtc-------tgtttttttttctc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7007935 71 - 14377064 cagctctgtattgctacagcctggaagccacaatgtgaatagagtgagggatttgtc-------tttgtatttttctc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056293 69 + 9889416 cagctctgtattgctacagcctggaagccacaatgtgaatacagtgagggatttgtc---------tttgtatttctc i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18310479 68 - 38779656 CAGCTCTTGCTTGCTATGGCCTGGAAGCCACAATGTGAAGAGGGTGAGAAGTTTGTT-------GTTGGATTTTT--- i otoGar3.GL873528 I 1980 C 0 s canFam3.chr31 11420062 78 + 39895921 cagttctggctaggtactgcctagaagctacagtgtggaataggtgagtgcttggtcacttgattttttttttttttc i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1161499 300 - 2312742 I e micMur3.chr31 16820365 504 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=2367736.000000 s hg38.chr21_GL383578v2_alt 13130 201 + 63917 tctttctct-------gttttgagctttgctacctcctgcctgaggttatctctggatcttcgagggttggagataatggga---aagaaagcaaggATAAATGTTTA--TATA-----TATTACACTTTTCAGATTTGAGGACACGAGTGTTGTTACCTTTCTCCTCCTACT---CACTTTACAGTTCTCATTCTCAAATCTTTCTGACCG-TTTTCAAAC s panTro5.chr21 849831 201 + 33445071 tctttctct-------gttttgagctttgctacctcctgcccgaggttatctctggatatttgagggttggagatagtggga---aagaaagcaaggATAAATGTTTA--TATA-----TATTACACTTTTCAGATTTGAGGACACGAGTGTTGTTACCTTTCTCCTTCTACT---CACTTTACAGTTCTCATTCTCAAATCTTTCTGACCA-TTTTCAAAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535215 201 + 46275980 tctttctct-------gttttgagctttgctacctcctgcccgaggttatctctggatcttcgagggttggagatagtggga---aagaaagcaaggATAAATGTTTA--TATA-----TATTACACTTTTCAGATTTGAGGACACAAGTGTTGTTACCTTTCTCCTCCTACT---CACTTTACAGTTCTCATTCTCAAATCTTTCTGACCA-TTTTCAAAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447273 201 - 13858734 tctttctct-------gttttgagctttgctgcctcctgcctgaggttatctctggatcttcgagggttggagatagtggga---aagaaagcaaggATAAATGTTTA--TATA-----TATTACACTTTTCAGATTTGAGGACACGAGTGTTGTTACCTTTCTCCTCCTACT---CACTTTACAGTTCTCATTCTCAAATCTTTCTGACCG-TTTTCAAAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574614 201 + 32716333 tctttctct-------gttttgagctttgctgcctcctgcccaaggttatctctggatctttgagggttggagatagtggga---aagaaagcaaggATAAATGTTTG--TATA-----TATTACACTTTTCAGATTTGAGGACATGAGTGTTGTTACCTTTCTCCTCCTACT---CACTTAACAGTTCTCATTCTCAAATCTTTGTGACAA-TTTTCAAAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643364 205 - 185818997 tcttcctct-------gctttgagctttgctgcctcctgcccaagattatctctggatctttgagggttggagatagtggga---aagaaagcaaggaaaAATGTTTG--TCTA-----TATTACACTTTTCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTACTTAGTACTTTACAGTTCTCATTCTCAAATCTTTCTGACTGCTTTTCAAAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451754 205 - 192294377 TCTTCCTCT-------GCTTTGAGCTTTGCTGCCTCCTGCCCAAGATTATCTCTGGATCTTTGAGGGTTGGAGATAGTGGGA---AAGAAAGCAAGGAAAAATGTTTG--TCTA-----TATTACACTTTTCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTACTTAGTACTTTACAGTTCTCATTCTCAAATCTTTCTGACTGCTTTTCAAAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896410 205 + 9440265 tcttcctct-------gctttgagctttgctgcctcctgcccaagattatctctggatctttgagggttggagatagtggga---aagaaagcaaggaaaAATGTTTG--TCTA-----TATTACACTTTTCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTACTTAGTACTTTACAGTTCTCATTCTCAAATCTTTCTGACTGCTTTACAAAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636236 205 + 21915920 tcttcctct-------gctttgagctttgctgcctcctgcccaagattatctctggatctttgagggttggagatagtggga---aagaaagcaaggAGAAATGTTTG--TCTA-----TATTACACTTTCCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTACTTAGTACTTTACAGTTCTCATTCTCAAATCTTTCTGACCGTTTTTCAAAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280674 202 - 90373283 TCTTCCTCT-------GCTTTGAGCTTTGCTGCCTCCTGCCCAAGATTATCTCTGGATCTTTGAGGGTTGGAGATAGTGGGA---AAGAAAGCAAGGAGAAATGTTTG--TCTA-----TATTACACTTTTCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTATT---TACTTTACAGTTCTCATTCTCAAATCTTTCTGACCGTTTTTCAAAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608540 205 + 1337817 tcttcctct-------gctttgagctttgctgcctcctgcccaagattatctctggatctttgagggttggagatagtggga---aagaaagcaaggAGAAATGTTTG--TCTA-----TATTACACTTTCCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTACTTAGTACTTTACAGTTCTCATTCTCAAATCTTTCTGACCGTTTTTCAAAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587217 202 - 3237654 tcttcctct-------gctttgagctttgctgcctcctgcccaaggttatctctggatcttcgagggttggagatagtggga---aagaaagcaaggAGAAATGTTTG--TCTG-----TATTACACTTTTCAGATTTGAGGACACAAGTGTTGTTACCTTCCTCCTCCTACT---TACTTTACAGTTCTCATTCTCAAATCTTTCTGACCGTTTTTCAAAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120201 207 + 50472720 tctttcttt-------gctttgagctttgctgcctcctaccccaggttatctctggatctttgagggttggagataatgggaaagaagaaagcaaggagaAATGTTTGTATATA-----TATTACAATTTTCAGATTTTAGAACATGAGTGTTGTTACCTTCCTCTTCCTACT---CACTTTACAGTTCTCATTCCCATGTATTTGTGACATCTTATCACAC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2472845 205 + 13128814 tctttctct-------cctttgagctttgctgcctcctaccccaggttatctctggatcttcgagggttggagataatgggaaagaagaaagcaaggagaAATATTTG--TATA-----TATTACACTTTTCAGATTTTAGAACATGAGTATTGTTACCTTCCTCTTCCTACT---CACTTTACAGTTCTCATTCCCATATATTTGTGACCTTTTATCACAC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008006 210 - 14377064 tctttctctcagcaaagctttgagctttgctgcctcctaccccaggttatctctggatcttcgagggttggagataatgggaaagaagaaagcaaggagaAATGTTTG----TA-----TATTACACTTTTCAGATTTTAGAACATGAGCGTTGTTACCTTTCTCTTCCTACT---CACTTTACAGTTCTCATTCCCATAGATTTGTGACCTTTTATCACAC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056362 205 + 9889416 tctttctct-------gctttgagctttgctgcctccttccctaggttatctctggatcttcgagggttggagataatgggaaagaagaaagcaaggATAAATGTTTG--TATA-----TATTACACTTTTCAGATTTTAGAACATGAGTGTTATTACCTTCCTCCTCCTACT---CACTTTACAGTTCTCATTCCCATATATTTGTGACCATTTATCACAC i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1161799 202 - 2312742 tctttccct-------gctttgagctttgctgtttcctgccccaggttatcactgtctcttcaaggtttggaggtagtgggaaggaagggaaggaagagaaATATTTA--TATA-----TATTTTGCTTTTCAGATTTGAAGAC--TAGTATTCTTGTCTTCCTTTTCTTAGT---CATTTCACGATTCTCATTCTCAGATCCTGCTGACCCTTTTCTATA- i proCoq1.NW_012147997v1 I 300 I 1 s otoGar3.GL873528 18310547 195 - 38779656 -CTTTCCCT-------GCTTTGAACATTGCTGCTTCTCACCCCAGGCTATCTCTGACTCTTCAATGTTTGGAGGC------AAGGAAGGGAGCCAGGAGAAATGTCAA--TATA-----TATTCTGCTTTTCAGACTTGAAAAC--TAGCATTCTTCTCTTCCTCTTCTCATT---CATTTCACAGTGCTCATGCTCACATCTTCCTGACCCTTTTCTGCA- i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11420140 198 + 39895921 tctttccct-------gctttgagttttgctgcctcctgttccaggttgtctctggctct-------ttggagatggtggaaaggaagaaaaggaggagaaATATATG--GGTACATTTCATTTCACTTTTTAAGTTTGAGGACACTGGTGTT-----CTTCTTCCTTCTGTT---CATTTTACTATTCTCATTCTCAAATCTTCCTGACCCTTTTCCACAC i canFam3.chr31 C 0 C 0 e micMur3.chr31 16820365 504 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=1934190.000000 s hg38.chr21_GL383578v2_alt 13331 130 + 63917 TCAGAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGCGGGTTTAGATAAACCTAA-GAAGG---AAAGAAAGCACAGG s panTro5.chr21 850032 130 + 33445071 TCAGAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGCGGGTTTAGATCAACCTAA-GAAGG---AAAGAAAGCACAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535416 130 + 46275980 TCAGAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGCGGGTTTAGATAAACCTAA-GAAGG---AAAGAAAGCACAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447474 130 - 13858734 TCAGAAATTCCAGTATGGGGAATTTGTACACTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGCGGGTTTAGATAAACCTAA-GAAGG---AAAGAAAGCACAGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574815 130 + 32716333 TGAGAAATTCCAGTATGAGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCTCTCTAAGTACCTGCGGGTTTAGATAAACCTGA-GAAGG---GAAGAAAGCACAGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643569 130 - 185818997 TCAAAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACCTGA-AAAGG---GAAGAAAGCACAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159451959 130 - 192294377 TCAAAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACCTGA-AAAGG---GAAGAAAGCACAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896615 130 + 9440265 TCAAAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACCTGA-AAAGG---GAAGAAAGCACAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636441 130 + 21915920 TCAGAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCCAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACCTGA-AAAGG---GAAGAAAGCACAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12280876 130 - 90373283 TCAGAAATTCCATTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACCTGA-AAAGG---GAAGAAAGCACAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608745 130 + 1337817 TCAGAAACTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACCTGA-AAAGG---GAAGAAAGCACAGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587419 130 - 3237654 TCAGAAATTCCAGTATGGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGGATGTGGTGCACTCTAAGTACCTGGGGGTTTAGATAAACTTGA-AAAGG---GAAGAAAGCACAGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120408 117 + 50472720 TGAGAAATTCCAGTATGGGGAGTTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TCTTAGACCACGTGGATGTGGTGCCCTCTAAGTACC-------------AAACCTGA-AAAGG---GAAGAAAGCACAGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473050 130 + 13128814 TCAGAAATTCCAGTATGGGAAATTTGTACACTGAAGGGTTTAAGGAAGCAGAAT----TCTTAGACCATGTGGATGTGGTGCCCTCTAAGTACCTGGGGGTTTAGGTAAACCTGA-AAAGG---GAAGTAAGCACAGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008216 130 - 14377064 TCAGAAATTCCAGTATAGGGAATTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TCTTAGACCATGTGGATGTCGTGTCCTCTAAGTACCTGGGGGATTAGGTAAACCTGA-AAAGG---GAAGAAAGCACAGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056567 130 + 9889416 TCAGAAATTCCAGTATGGGGATTTTGTACATTGAGGGGTTTAAGGAAGCAGAAC----TCTTAGACCATGTGGATGTGGTGCCCTCTAAGTACCTGGGGGTGTAGGTAAACCTGA-GAAGG---GAAGAAAGCACAGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16820869 134 + 47401472 TCAGCAATTCCAGTACAGGTAATTTGTACATTGAAGGATTTAAGGAAGCAGAACTAAATTTTAGGCCATGTGAATGTGGTGCCCTCTAAGCACCTGAGAGTTTAGATAAACCTGA-GGATG---GATGAAAGCACAGG i micMur3.chr31 I 504 C 0 s proCoq1.NW_012147997v1 1162002 130 - 2312742 TCAGCAATTCCAGTACAGGTATTTTGTACATTGAAGGGTTTAAGGAAGCAGAAC----TTCTAGGCCATGTGAATGTGGTGCCCTCTAAGCACTTGGGGGTTTAGGTAAACCTGA-GGATG---GATGAAAGCACAGG i proCoq1.NW_012147997v1 I 1 C 0 s otoGar3.GL873528 18310743 133 - 38779656 TCAGAAGTCCCAGTATAGGTAAGTTGTACACTGAAGGGTTTAAACCCGCAGAAC----TTCTGGGCTGTGTGAATGTGGTGGCCTCTAAGGACCTGGGGGTTTAGGTAAACCTGA-GGGGGAGAGAAAAAATCACAGG i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11420338 131 + 39895921 TCAGAAATTCCAGCTTGAGTAATGTGTAAAATGAAGAGTTTAAGGAAGTAGAGC----TTTTAGGCCATGTGGATGTGGGGCTCTCTAAGCATCTGGGGGTTTAGATAAACCTGAGGGAGG---GAAGAAAATACAAG i canFam3.chr31 C 0 I 6243 e dasNov3.JH568778 622427 200 - 6883506 I a score=786488.000000 s hg38.chr21_GL383578v2_alt 13461 57 + 63917 GTACATGAGTTTTGATCTCTGATACATTAGAG---TCTTGAGAACAAGAATGATGAAGGA s panTro5.chr21 850162 57 + 33445071 GTACATGAGTTTTGATCTCTGATACATTAGAG---TCTTGAGAACAAGAATGATGAAGGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535546 57 + 46275980 GTACATGAGTTTTGATCTCTGATACATTAGAG---TCTTGAGAACAAGAATGATGAAGGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447604 57 - 13858734 GTACATGAGTTTTGATCTCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1574945 57 + 32716333 GTACATGAGTTTTGATCTATGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643699 57 - 185818997 GTACATGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452089 57 - 192294377 GTACATGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896745 57 + 9440265 GTACATGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636571 57 + 21915920 GTACGTGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281006 57 - 90373283 GTACATGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAAAATGATAAAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608875 57 + 1337817 GTACATGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587549 57 - 3237654 GTACATGAGTTTTGATCCCTGATACATTAGAG---TCTTGAGAACAAGAATGATAAAGGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120525 57 + 50472720 ATACATGCGTTTTGATCTCTGATGCATTAGAG---TCTTGAGGACAAGAATGATAAAGAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473180 57 + 13128814 ATACATGAGTTTTGATCTCTAATGCATTAGAG---TTTTGAAAACAAGAATGATAAAGAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008346 57 - 14377064 ATACATGAGTTTTGATCTCTGATGCATTAGAG---TCTTGAGAACAAGAATGGTAAAGAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056697 57 + 9889416 ATACATGAGTTTTGATCTCTGATGCATTAGAG---TCTTGAGAGCAAGAATGATAACAAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16821003 60 + 47401472 GTAAATGAGTTTTGATCCCTGACATATTAGAGAGAATATGAAAAAGAGAATGATAAAGGG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1162132 60 - 2312742 GTAAAGGAGTTTTGATCCCTGACCGATTAGAGAGAATATGAGAAAGAGAATGATAAAGGG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18310876 56 - 38779656 GTAAATGAGTTTTGAT-CCTGCCATATCAGAT---TCTTGAGAAAGAGAATGACAAAGGA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11426712 57 + 39895921 GTAAATGGATTTTGATTACTGAAATATTAGGT---TCTTGTAAAAGAGAATGATAAAAGA i canFam3.chr31 I 6243 C 0 e dasNov3.JH568778 622427 200 - 6883506 I a score=490468.000000 s hg38.chr21_GL383578v2_alt 13518 36 + 63917 TCAAGAGAGCCAATGGATAAGACTGGAGGAAAGGAA s panTro5.chr21 850219 36 + 33445071 TCAAGAGAGCCAATGGATAAGACTGGAGGAAAGGAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535603 36 + 46275980 TCAAGAGAACCAATGGGTAAGACTGGAGGAAAGGAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447661 36 - 13858734 TCAAGAGAGCCAATGGATAAGACTGGAGGAAAGGAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575002 36 + 32716333 TCGAGAGAGCCAATGAATAAGCCTGGAGGGAAGGAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643756 36 - 185818997 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452146 36 - 192294377 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896802 36 + 9440265 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636628 36 + 21915920 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281063 36 - 90373283 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608932 36 + 1337817 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587606 36 - 3237654 TCAAGAGAGCTAATGGATAAGACTGGAGGAAAGGAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120582 36 + 50472720 TCAAGAGAGCCAATGGATAAGACCGGAGGAAAGAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473237 36 + 13128814 TCAAGAGAGCCAATGGATAAGACCGTAGGAAAGAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008403 35 - 14377064 TCAAGAGAG-CAATGGATAAGACCAGAGGAAAGAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056754 36 + 9889416 TCAAGAGAGCCAATGGATAAGACCGGAGGAAAGAAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16821063 36 + 47401472 TAAAGAAAGCCAATGGATAAGACTAGAGAAAAGGAA i micMur3.chr31 C 0 I 446 s proCoq1.NW_012147997v1 1162192 36 - 2312742 TAAAGAGAGCCAATGGATAAGACTAGAGAAAAGGAA i proCoq1.NW_012147997v1 C 0 I 343 s otoGar3.GL873528 18310932 36 - 38779656 TAAAGAGAACCAAAGGATGAAACTAGAGAAAAGGAG i otoGar3.GL873528 C 0 C 0 e dasNov3.JH568778 622427 200 - 6883506 I e canFam3.chr31 11426769 0 + 39895921 C a score=1619480.000000 s hg38.chr21_GL383578v2_alt 13554 159 + 63917 GCAGTGGGCAGGAATAGTGGAGCTTGAGCAGGTGGGCCCCGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACAATG---TTCTGTCAATCAGCTTCAGACTCCCTCAGTCACTGCCATAGTCCAGTCAGACTCCTATTTGTTCTCTCTTTCAT s panTro5.chr21 850255 159 + 33445071 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCCGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACAATG---TTCTGTCAATCAGCTTCAGACTCCCTCAGTCACTGCCATAGTCCAGTCAGACTCCTATTTGTTCTCTCTTTCAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535639 159 + 46275980 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCCGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACAATG---TTCTGTCAATCAGCTTCAGACTCCCTCAGTCACTGCCATAGTCCAGTCAGACTCCTATTTGTTCTCTCTTTCAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447697 159 - 13858734 GCAGTGGGCAGGAAGGGTGGAGCTTGAGCAGGTGGGCCCCGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACAATG---TTCTGTCAATCAGCTTCAGACTCCCTCAGTCACTGCCATAGTCCAGTCAGACTCCTATTTGTTCTCTCTTTCAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575038 162 + 32716333 GCAGTGGGCAGGAAGAATGGAGCTTAAGCAGGTGGGCCCCGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACGATGTTCTTCTGTCAATCAGCTTCAGACTCCCTCAGTCACTGCCATAATCCAGTCAGACTCCTACTAGTTCTCTCTTTCAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643792 162 - 185818997 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCTGGGTCCTGAAGCCTGAAAGGATGAGTGCTGCCTGGACCCATGGTATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGCCATAATCCAGTCAGGCTCCAGTTTGTTCTCTCTTTCAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452182 162 - 192294377 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCTGGGTCCTGAAGCCTGAAAGGATGAGTGCTGCCTGGACCCATGGTATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGCCATAATCCAGTCAGGCTCCGGTTTGTTCTCTCTTTCAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5896838 162 + 9440265 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGACCCTGGGTCCTGAAGCCTGAAAGGATGAGTGCTGCCTGGACCCATGGTATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGCCATAATCCAGTCAGGCTCCGGTTTGTTCTCTCTTTCAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636664 162 + 21915920 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGATGGGCCCTGGGTCCTGAAGCCTGAAAGGATGAGTGCCGCCTGGACCCACGATATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGCCATAATCCAGTCAGGCTCCGGTTTGTTCTCTCTTTCAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281099 162 - 90373283 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCTGGGTCGTGAAGCCTGAAAGGATGAGTGCTGCCTGGACCCATGATATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGGCATAATCCAGTCAGGCTCCTGTTTGTTCTCTCTTTCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 608968 162 + 1337817 ACAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCTGGGTCCTGAAGCCTGAAAGGATGAGTGCCGCCTGGACCCACAATATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGCCATAATCCAGTCAGGCTCCGGTTTGTTCTCTCTTTCAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587642 161 - 3237654 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCTGGGTCCTGAAGCCTGAAAGGATGAGTACTACCTGGACCCACGATATTCTGCTGTCAATCAGCTTCAGACTCCCTCGGTCACTGCCAT-ATCCAGTCAGGCTCCCGTTTGTTCTCTCTTTCAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120618 162 + 50472720 GCAGTGGGCAAGAAGAGTGGAGCTTGAGCAGGTGGGTCCAGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACATTATTTGGCTGTCAATCACCTTCAGACTCCCTCAGTCACTGCCATAGTCCACTCAGGCTCCCATTTATTTTCTCCTCCAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473273 162 + 13128814 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTGGGCCCAGGGTGCTGAAGCCTGGAAGGATGGGTGCTTCCTGGACCCACAATAGTTGGCTGTCAGTCACCTTCAGACTCCCTCAGTCACTGCCGTAGTCCAATCGGGCTCTGATTTGTTTTATTCTCCAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008438 162 - 14377064 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCAGGTTGGCCCAGGGTGCTGAAGCCTGGAAGGATGGGTGCTGCCTGGACCCACAATATTTGTCTGTCAGTCACCTTCAGACTGCCTCAGTCACTGCCATAGTCCAATCAGGCTCCCATTTGTTTTCTCCGCCAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056790 161 + 9889416 GCAGTGGGCAGGAAGAGTGGAGCTTGAGCATGTGGGCCCAGGGTGCTGAAGCCTGGAAGGATGGGTGCCGCCTGGACCCACAATATTTGGCTGTCAGTCTCCTTCAGACTCCC-CAGTCACTGCCATAGTCCAATCAGGCTCCCATTTGTTTTCTCTTCCAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18310968 149 - 38779656 GCAATGGATAGAAGACATGGCAGTTGAGGACATGGCCCTC----------GCTCTAAAGGA--GGCACTGTCTGGACCCACACTGTCCTGCTCCCAGTCTGCCCCAGAC-CCCTCAGTCACCACCACAGTCCAGTCCAGCTTCCATGTCTTTCCTCTTGCAC i otoGar3.GL873528 C 0 C 0 e proCoq1.NW_012147997v1 1162228 343 - 2312742 I e micMur3.chr31 16821099 446 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I e canFam3.chr31 11426769 0 + 39895921 C a score=504659.000000 s hg38.chr21_GL383578v2_alt 13713 47 + 63917 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTCATAATTG-------------------------TATTT s panTro5.chr21 850414 47 + 33445071 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTCATAATTG-------------------------TATTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535798 47 + 46275980 TCAAGAGAAAAGGTCATGGAATGCAATGAGAATTCATAATTG-------------------------TATTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447856 47 - 13858734 TCAAGAGAAAAGATCATGGAATGCAACGAGAATTCATAATTG-------------------------TATTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575200 47 + 32716333 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTCATAATTG-------------------------TATTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643954 45 - 185818997 TC--GAGAAAAGATCATGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452344 47 - 192294377 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897000 47 + 9440265 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636826 47 + 21915920 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281261 47 - 90373283 TCGAGAGAAAAGATCCTGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609130 47 + 1337817 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587803 47 - 3237654 TCAAGAGAAAAGATCATGGAATGCAATGAGAATTTACAATTG-------------------------TATTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120780 47 + 50472720 GCAAGAGAATAGATCATGGAATGCAATGAGAATTCATAATTA-------------------------TACCC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473435 47 + 13128814 GCAAGACAATAAATCATAGAATGCAATGAGAGTTCATAATTG-------------------------TACCC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008600 47 - 14377064 GTAAGAGAATAGATCATGGAATGCAATGAGAGTTCATAATTG-------------------------TACCC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056951 47 + 9889416 GCAAGATAATAGATCATGGAATGCAATGAGAGTTTATAATTG-------------------------TACCC i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18311117 72 - 38779656 ACAAGAAGAAGGACCGTGGAATACAATGAGAATTCATAATTGCCCCATGtttctttatttatttacttattt i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11426769 44 + 39895921 TCAAGAGAAAAAATCATGGAATATGATGAAAATTCATAATTG-------------------------CC--- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1162228 343 - 2312742 I e micMur3.chr31 16821099 446 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=15561.000000 s hg38.chr21_GL383578v2_alt 13760 1 + 63917 A s panTro5.chr21 850461 1 + 33445071 A i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535845 1 + 46275980 A i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447903 1 - 13858734 A i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575247 1 + 32716333 A i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152643999 1 - 185818997 A i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452391 1 - 192294377 A i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897047 1 + 9440265 A i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636873 1 + 21915920 A i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281308 1 - 90373283 A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609177 1 + 1337817 A i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587850 1 - 3237654 A i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120827 1 + 50472720 A i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473482 1 + 13128814 A i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008647 1 - 14377064 A i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056998 1 + 9889416 A i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1162571 1 - 2312742 A i proCoq1.NW_012147997v1 I 343 C 0 s otoGar3.GL873528 18311189 1 - 38779656 a i otoGar3.GL873528 C 0 I 128 s canFam3.chr31 11426813 1 + 39895921 A i canFam3.chr31 C 0 C 0 e micMur3.chr31 16821099 446 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=349324.000000 s hg38.chr21_GL383578v2_alt 13761 25 + 63917 AGTTTCATATGATGCCTAAAATTAA s panTro5.chr21 850462 25 + 33445071 AGTTTCATATGATGCCTAAAATTAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535846 25 + 46275980 AGTTTCATATGATGCCTAAAATTAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447904 25 - 13858734 AATTTCATATGATGCCTAAAATTAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575248 25 + 32716333 AGTTTCATATGATGCCTAAAATTAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644000 25 - 185818997 AGTTTCATATGATGCCTAAAATTAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452392 25 - 192294377 AGTTTCATATGATGCCTAAAATTAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897048 25 + 9440265 AGTTTCATATGATGCCTAAAATTAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636874 25 + 21915920 AGTTTCATATGATGCCTAAAATTAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281309 25 - 90373283 AGTTTCATATGATGCCTAAAATTAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609178 25 + 1337817 AGTTTCATATGATGCCTAAAATTAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587851 25 - 3237654 AGTTTCATATGATGCCTAAAATTAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120828 25 + 50472720 AGTTTCATGTGATGACTAAAATTAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473483 25 + 13128814 AGTTTCATATGATGCCTAAAATTAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008648 25 - 14377064 AGTTTCATATGATGCCTAAAATTAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6056999 25 + 9889416 AGTTTCATATGATGCCTAAAATTAA i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1162572 25 - 2312742 AGTTTTATATGATGCCTGAAATTAA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18311318 25 - 38779656 AGTTTTCTATGATGCCTGAAATTAA i otoGar3.GL873528 I 128 C 0 s canFam3.chr31 11426814 20 + 39895921 AGTTTTGTAAGATACCTA-----AA i canFam3.chr31 C 0 C 0 e micMur3.chr31 16821099 446 + 47401472 I e dasNov3.JH568778 622427 200 - 6883506 I a score=595429.000000 s hg38.chr21_GL383578v2_alt 13786 48 + 63917 TTTTATGAGAGAC--AAAA-A----TATTTTAAACAATTAGAAACAAGGCTTAAA s panTro5.chr21 850487 48 + 33445071 TTTTATGAGAGAC--AAAA-A----TATTTTAAACAATTAGAAACAAGGCTTAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535871 48 + 46275980 TTTTATGAGAGAC--AAAA-A----TATTTTAAACAATTAGAAACAAGGCTTAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447929 48 - 13858734 TTTTATGAGAGAC--AAAA-A----TATTTTAAACAATTAGAAACAAGGCTTAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575273 47 + 32716333 TTTTATGAGAGAC--AAAA-A-----AATTTAAACAATTAGAAACAAGGCTTAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644025 48 - 185818997 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452417 48 - 192294377 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897073 48 + 9440265 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636899 48 + 21915920 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281334 48 - 90373283 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609203 48 + 1337817 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587876 48 - 3237654 TTTTATGAGAGAC--AAAA-A----TGTTTTAAACAATTAGAAACAAGGCTTAAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120853 48 + 50472720 TTTAATGAGAGAT--AAAA-A----TGTTTTAAACAATTAGAAACAAGACTTAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473508 38 + 13128814 TTTAATGAGAGATAAAAAA-A----TGTTTT----------AAACAAGAC--AAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008673 48 - 14377064 TTTAATGAGAGAT--AAAA-A----TGTTTTAAACAATTAGAAACAAGACTTAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057024 48 + 9889416 TTTAATGAGAGAT--AAAA-A----TGTTTTAAACAATTAGAAACAAGACTTAAG i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1162597 47 - 2312742 TTTAGTGAGGAAA--AATA-A-----TTTTTAAATAATTAGAAACAAGGTTTAAA i proCoq1.NW_012147997v1 C 0 I 79 s otoGar3.GL873528 18311343 48 - 38779656 TTTAATGAGGGAC--GATA-G----TTTTTTTAACAATCAGAAACAAGGCTGATG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11426834 49 + 39895921 CTTCATGAGGAAC--AAAATG----TTTTTTTAATCTTTAGTAACAAAGATTAAA i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 622627 52 - 6883506 TTCTAAGAAAGAA--AAAA-AATCTTTCTTTACACAATTAGAGACAAGACTTAAG i dasNov3.JH568778 I 200 C 0 e micMur3.chr31 16821099 446 + 47401472 I a score=218694.000000 s hg38.chr21_GL383578v2_alt 13834 26 + 63917 TGAAAATTCCTCAAACT--CTTAA-AATG------- s panTro5.chr21 850535 26 + 33445071 TGAAAATTCCTCAAACT--CTTAA-AATG------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535919 26 + 46275980 TGAAAATTCCTCAAACT--CTTAA-AATG------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 447977 26 - 13858734 TGAAAATTCCTCACACT--CTTAA-AATG------- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575320 26 + 32716333 TGAAAATTCCTCACACT--CTTAT-AATG------- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644073 26 - 185818997 TGAAAATTCCTTAAACT--CTTAT-AATG------- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452465 26 - 192294377 TGAAAATTCCTTAAACT--CTTAT-AATG------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897121 26 + 9440265 TGAAAATTCCTTAAACT--CTTAT-AATG------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636947 26 + 21915920 TGAAAATTCCTGAAACT--CTTAT-AATG------- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281382 26 - 90373283 TGAAAATTCCTTAAACT--CTTAT-AATG------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609251 26 + 1337817 TGAAAATTCCTTAAACT--CTTAT-AATG------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587924 26 - 3237654 TGAAAATTCCTTAAACT--CTTAT-AATG------- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120901 27 + 50472720 TGAAAATTCCTCAAACT--GTTATAAATG------- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473546 27 + 13128814 TGAAAATTGCTCAAACT--GTTATAAATG------- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008721 27 - 14377064 TGAAAATTCCTCAGACT--GTTATAAATG------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057072 27 + 9889416 TGAAAATTCCTCAAACT--GTTATAAATT------- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18311391 28 - 38779656 AGTAAATCCTTCAGAAGAAATTAC-AATA------- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11426884 27 + 39895921 TGCAAATTTCCAGGAAT-AATTGT-AACA------- i canFam3.chr31 I 1 C 0 s dasNov3.JH568778 622679 33 - 6883506 TACAAGTTTCCTGGGTA--CTTTA-AACTAAAGTTG i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1162644 79 - 2312742 I e micMur3.chr31 16821099 446 + 47401472 I a score=699010.000000 s hg38.chr21_GL383578v2_alt 13860 54 + 63917 ATTGAATGTATTCACACTAAAGAGTGAATGATTAATATAAAAATCCATCTTTGA s panTro5.chr21 850561 54 + 33445071 ATTGAATGTATTCACACTAAAGAGTGAATGATTAATATAAAAATCCATCTTTGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535945 54 + 46275980 ATTGAATGTATTCACACTAAAGAGTGAATGATCAATGTAAAAATCCATCTTTGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448003 54 - 13858734 ATTGAATGTATTCACACTAAAGAGTGAATGATTAATATAAAAATCCATCTTTGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575346 54 + 32716333 ATTGAATGTATTCACACTAAAGAGTGAATGAATAATATAAAAATCCATCTTTGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644099 54 - 185818997 ATTGAATTTATTCATACTAAAGAGTGAATGATTAATATAAAAATCCGTCTTTGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452491 54 - 192294377 ATTGAATTTATTCATACTAAAGAGTGAATGATTAATATAAAAATCCATCTTTGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897147 54 + 9440265 ATTGAATTTATTCATACTAAAGAGTGAATGATTAATATAAAAATCCGTCTTTGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5636973 52 + 21915920 ATTGAATTTATTCATACTAAAGAGTGAATGATTA--ATAAAAATCCATCTTTGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281408 54 - 90373283 ATTGAATTTATTCATACTAAAGAGTGAATGATTAATATAAAAATCCATCTTTGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609277 54 + 1337817 ATTGAATTTATTCATACTAAAGAGTGAATGATTAATATAAAAATCCGTCTTTGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 587950 54 - 3237654 ATTGAATTTATTCATACTAAAGAGTGAATGATTAATATAAAAATCCATCTTTGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120928 54 + 50472720 AGTGAATTTATTCATACTAAAAAGTGAATGATTAATACAAAAATCTGTTTTTGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473573 54 + 13128814 ATTGAATTTATTCATACTAAAAAGTGTATGATTAATACAAAAATCTGTCTTTGA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008748 54 - 14377064 ATTGAATTTATTCATACTAAAAAGTGAATGATTAATACAAAAACCTGTCTTTGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057099 54 + 9889416 ATTGAATTTATTCATACTAAAAAGTGAATGATTAATACAAAAATCTGTCTTTGA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16821545 53 + 47401472 ATTAAATGCATTCACACTAAAATGTAAATGGTTAATATAAAAT-CAGTCTTTGA i micMur3.chr31 I 446 C 0 s otoGar3.GL873528 18311419 52 - 38779656 ATTGAATTCATTCACATTAAAATGTGAATGACTCATATAAAAA-TAGTCTTTA- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11426911 53 + 39895921 ATTAAAGCCATTCATAGTAGAGTGCAAATAGTTAATATAAAA-TCCATCTTTGA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622712 53 - 6883506 ATTAAGGACATTTGTACTAAAGTGTCAATGATTAATATCAAA-TCAGTCTTTTA i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1162644 79 - 2312742 I a score=575782.000000 s hg38.chr21_GL383578v2_alt 13914 40 + 63917 AATGATGGCAGAAGGAGAGAAAGACCACTGGACTCCTGAT s panTro5.chr21 850615 40 + 33445071 AATGATGGCAGAAGGAGAGAAAGACCACTGGACTCCTGAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14535999 40 + 46275980 AATGATGGCAGAAAGAGAGAAAGACCACTGGACTCCTGAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448057 40 - 13858734 AATGATGGCAGAAGGAGAGAAAGACCACTGGACTCCTGAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575400 37 + 32716333 AATGATGGCAG---GAGAGAAAGACCATTGGACTCCTGAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644153 40 - 185818997 AATGATGGCAGAAGGAGAGAAAGATCACTGGACTCCTGAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452545 40 - 192294377 AATGATGGCAGAAGGAGAGAAAGATCACTGGACTCCTGAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897201 40 + 9440265 AATGATGGCAGAAGGAGAGAAAGATCACTGGACTCCTGAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637025 40 + 21915920 AATGATGGCAGAAGGAGAGAAAGATCACTGGACTCCTGAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281462 40 - 90373283 AATGATGGAAGAAGGAGAGAAACATCACTGGACTCCTGAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609331 40 + 1337817 AATGATGGCAGAAGGAGAGAAAGATCACTGGACTCCTGAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588004 40 - 3237654 AATGATGGCAGAAGGAGAGAAAGATCACTGGACTCCTGAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19120982 38 + 50472720 AATTATGGCAGAAGGAAAGAAAGACCACTGGACTCC--AT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473627 38 + 13128814 AATGGTGGCAGGAGGAGAGAAAGACCACTGGACTCC--AT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008802 38 - 14377064 AATGATGGCAGAGGGAGGGAAAGACCACTGGACTCC--AT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057153 38 + 9889416 AATGATGGCAGAAGGAGAGAAAGACCACTGGACTCC--CT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16821598 39 + 47401472 -ATGATGAGAGAAGGGGAAAAAGACCACTGGACTCCTGAT i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1162723 40 - 2312742 AATGATGGGAGAGGGAGAGAAATACCACTGGACACCTGAT i proCoq1.NW_012147997v1 I 79 I 106 s otoGar3.GL873528 18311471 40 - 38779656 AATGATAGGAGGAGGAGAAAAAGACCACTGGAATGCTGAT i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11426964 37 + 39895921 ---CATGATAGCAGGAGAAAAAAATCTCTGCACTTCTAAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622765 40 - 6883506 ACTGTTAGGAGAAGAAGAGAAACACCAGTGTACTCTTGAT i dasNov3.JH568778 C 0 C 0 a score=14095.000000 s hg38.chr21_GL383578v2_alt 13954 2 + 63917 GG s panTro5.chr21 850655 2 + 33445071 GG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536039 2 + 46275980 GG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448097 2 - 13858734 GG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575437 2 + 32716333 GG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644193 2 - 185818997 GG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452585 2 - 192294377 GG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897241 2 + 9440265 GG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637065 2 + 21915920 GG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281502 2 - 90373283 GG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609371 2 + 1337817 GG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588044 2 - 3237654 GG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121020 2 + 50472720 GG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473665 2 + 13128814 AG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008840 2 - 14377064 AG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057191 2 + 9889416 GG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16821637 1 + 47401472 G- i micMur3.chr31 C 0 I 116 s otoGar3.GL873528 18311512 1 - 38779656 G- i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11427001 2 + 39895921 GG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622805 2 - 6883506 GG i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1162763 106 - 2312742 I a score=673420.000000 s hg38.chr21_GL383578v2_alt 13956 54 + 63917 GTAGTAGGGTGACAATACCTAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA s panTro5.chr21 850657 54 + 33445071 GTAGTAGGGTGACAATACCTAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536041 54 + 46275980 GTAGTAGGGTGACAATACCTAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448099 54 - 13858734 GTAGTAGGGTGACAATACCTAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575439 54 + 32716333 GTGGTAGGGTGAAAACACCCTATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644195 54 - 185818997 GTGATAGGGTGACAACACCCAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452587 54 - 192294377 GTGATAGGGTGACAACACCCAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897243 54 + 9440265 GTGATAGGGTGACAACACCCAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637067 54 + 21915920 GTGATAGGGTGAAAACACCCAATATTCAGATTTG-AGATGG---CATAAAGATGTTTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281504 54 - 90373283 GTGATAGGGTGACAACACCCAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609373 54 + 1337817 GTGATAGGGTGAAAACACCCAATATTCAGATTTG-AGATGG---CATAAAGATGTTTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588046 54 - 3237654 GTGATAGGGTGACAACACCCAATATTCAGATTTG-AGATGG---CACAAAGATGTTTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121022 54 + 50472720 GTGATAGGGTGACAACACCCAACATTCAGATTTG-AGATGG---CACAAAGATGTTTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473667 54 + 13128814 GTGATAGGGCGACCACACCCAACATTCAGATTTG-AGATGG---CACAAAGATGTTTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008842 54 - 14377064 GTGATAGGGTGACAACACCCAACATTCAGATTTG-AGATGG---CACAAAGATGTTTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057193 54 + 9889416 GTGATAGGGTAACAACACCTAACATTCAGATTTG-AGATGG---CACAAAGATGTTTA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18311513 55 - 38779656 GTGAAAGGGGGACAGAACACAATATTCGGAGTGGAAAATGG---CACCGAGATGTATA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11427003 52 + 39895921 GTAGTAAGG--ACAACATCCAACATCTGGATGAG-AAATGG---CACAAAGATGTTTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 622807 56 - 6883506 TTGACAGGG-GACAACACCAAGCATCCAGATAGG-AAAAGGGCACACAAAGAAATTTA i dasNov3.JH568778 C 0 M 625 e proCoq1.NW_012147997v1 1162763 106 - 2312742 I e micMur3.chr31 16821638 116 + 47401472 I a score=390417.000000 s hg38.chr21_GL383578v2_alt 14010 52 + 63917 AGGAAACCAAGACTT------------------------TCTCTCTCTCTTTCTCTT---CTTTTTTAAACCACAAACA s panTro5.chr21 850711 52 + 33445071 AGGAAACCAAGACTT------------------------TCTCTCTCTCTTTCTCTT---CTTTTTTAAACCACAAACG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536095 52 + 46275980 AGGAAACCAAGACTT------------------------TCTCTCTCTCTTTCTCTT---CTTTTTTAAACCACAAACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448153 48 - 13858734 AGGAAACCAAGACTT----------------------------TCTCTCTTTCTCTT---CTTTTTTAAACCACAAACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575493 52 + 32716333 AGGAAACCAAGAGTT------------------------TCTCTCTCTCTCTGTCTT---CTTTTTTAAACCACAAACG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644249 46 - 185818997 AGGAAACCAAGACTT----------------------------TCTCTCC--CTCTC---TTTTTTTAAACCACAAATG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452641 48 - 192294377 AGGAAACCAAGACTT----------------------------TCTCTCCCTCTCTC---TTTTTTTAAACCACAAATG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897297 48 + 9440265 AGGAAACCAAGACTT----------------------------TCTCTCCCTCTCTC---TTTTTTTAAACCACAAATG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637121 48 + 21915920 AGGAAACCAAGACTT----------------------------TCTCTCCCTCTCTC---TTTTTTTAAACCACAAATG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281558 48 - 90373283 AGGAAACCAAGACTT----------------------------TCTCTCCCTCTCTC---TTTTTTTAAACCACAAATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609427 48 + 1337817 AGGAAACCAAGACTT----------------------------TCTCTCCCTCTCTC---TTTTTTTAAACCACAAATG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588100 49 - 3237654 AGGAAACCAAGACTT----------------------------TCTCACCCTCTCTC--TTTTTTTTAAACCACAAATG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121076 76 + 50472720 AGGAAACCAAGGctttctctctctctctctctctctctctctctctctctctctctc---tctTTTTAAACTGCAAATG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473721 42 + 13128814 AGGAAACCAAGACTT----------------------------------TCACTCTC---TCTTTTTAAACTGCAAATG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008896 56 - 14377064 AGGAAACCAAGACTT--------------------tctctctctctctctctctctc---tctTTTTAAACTGCAAATG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057247 45 + 9889416 AGGAAACCAAGACTT----------------------------------TCTCTCTCTTTTTTTTTTAAACCGCAAATG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18311568 47 - 38779656 AGG--ACAAAAAATT------------------------GTTTTGTTTTTTTTTTAC---CTTTTT---ACCACAACTG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11427055 32 + 39895921 AGAAGATCAAGACTG--------------------------------------TCTC---TTTTTTACAACTA------ i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1162763 106 - 2312742 I e micMur3.chr31 16821638 116 + 47401472 I e dasNov3.JH568778 622863 625 - 6883506 M a score=9432765.000000 s hg38.chr21_GL383578v2_alt 14062 631 + 63917 CCTTTGGATAAGTAAAAGC------TTTTTCGCAGATATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGGTTTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTTACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTaaatacag---------------------a-aa---aaaaaaaaaaaaaaaaTTCTGTCACAGTTCACATCACTTCAGGATTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTCGTTTTGGTGATGCTGGTAGAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCGTACATTAGCCT-AGACATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGTTAAGAAACTGCTTTTGAAAT s panTro5.chr21 850763 634 + 33445071 CCTTTGGATAAGTAAAAGC------TTTTTCGCAGATATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAACGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGGTTTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------A-AAAACAAAAACAAAAACAAAATTCTGTCACAGTTCACATCACTTCAGGATTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTCGTTTTGGTGATGCTGGTAGAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCGTACATTAGCCT-AGACATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGTTAAGAAACTGCTTTTGAAAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536147 631 + 46275980 CCTTTGGATAAGTAAAAGC------TTTTTCGCAGATATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTAGACAGTAATTCTAATTCTGAAGAACACATGCAGTAGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGGTTTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------A-AA---AAAAAACAAAACAAAATTCTGTCACAGTTCACATCACTTCAGGATTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTCGTTTTGGTGATGCTGGTAGAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGGACATGCCTACATTAGCCT-AGACATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGTTAAGAAACTGCTTTTGAAAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448201 634 - 13858734 CCTTTGGATAAGTAAAAGC------TTTTTCGCAGATATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-TGGAAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAACGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACAGTTTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAaatacag---------------------a-aaaaaacaaaacaaaacaaaaTTCTGTCACAGTTCGCATCACTTCAGGATTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTCGTTTTGGTGATGCTGGTAGAATAGACGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCGTACATTAACCT-AGACATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGTTAAGAAACTGCTTTTGAAAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1575545 634 + 32716333 CCTTTGGATAAGTAAAAGC------TTTTTCGCAGATATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-TGGGAGCCAGAATCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGGTTTTTCCCTCTAGAAGGGCTAAACTTCTGAAACCTAACAGTGATGGAACTGAAGCTTTGAAGTTGTTTTAAGTaaatacag---------------------a-aaaa-aaaaacaaaaacaaaaTTCTGTCACAGTTCACATCACTTCAGGATTGACATTACCTGC----------TTCTATTTAT-TTTTTTACTTCGTTTTCGTGATGCTGGTAGAATAGATGTCACTTGAGAGGTCAAGTCTTC--GAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTGATGCGTACGTTAGCCT-AGGCATTTCTTTGAAGCAGCTGCTAGGTTAAGGAAATGCCAGTGCCAAGAAACTGCTTTTGAAAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644295 622 - 185818997 CTTTTGTATAAGTAAAAGC------TTTACCGCAGATATACGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------G-AA-----------AAAAAAAATTCTGTCACAGTTCACATCATTTCAGGATTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGGAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATACATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTCCTTTTGAAGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159452689 622 - 192294377 CTTTTGGATAAGTAAAAGC------TTTATCGCAGATATACGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------G-AA-----------AAAAAAAATTCTGTCACAGTTCACATCATTTCAGGACTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGGAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATACATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTCCTTTTGAAGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897345 622 + 9440265 CTTTTGGATAAGTAAAAGC------TTTATCGCAGATATACGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------G-AA-----------AAAAAAAATTCTGTCACAGTTCACATCATTTCAGGACTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGGAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATACATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTGCTTTTGAAGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637169 621 + 21915920 CTTTTGGATAAGTAAAAGC------TTTATCGCAGATATACGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------G--A-----------AAAAAAAATTCTGTCACAGTTCACATCATTTCAGGACTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGGAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATACATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAATGCTAAGAAACTCCTTTTGAAGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12281606 621 - 90373283 CTTTTGGATAACTAAAAGC------TTTATCGCAGATATACGACATTTTACATGGGCCATGTCCCAAATGTTCTATCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-CTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------G--A-----------AAAAAAAATTCTGTCACAGTTCACATCACTTCAGGACTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGGAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAAGGAGATTTGCTGCTCATGCATACATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTCCTTTTGAAGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 609475 622 + 1337817 CTTTTGGATAAGTAAAAGC------TTTATCGCAGATATACGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------G-AA-----------AAAAAAAATTCTGTCACAGTTCACATCATTTCAGGACTGACATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGGAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATACATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAATGCTAAGAAACTCCTTTTGAAGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588149 624 - 3237654 TTTTTGGATAAGTAAAAGC------TTTATCGCAGATATACGACATTTTACATGGGCTATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGGCTTAAAAGGGGCA-TGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAAAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACTTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------GAAA-----------AAAAAAAATTCTGTCACAGTTCACATCACTTCAGGACTG-TATTACCTGC----------TTTTATTTA--TTTTTTACTTTGTTTTGGTGATGCTGGTAAAATAGATGTCACTTGAGAGGTCAAGTCTTCAAAAAACAGGAGGGAAGTAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTACTGCTCATGCATGCATTAGCCT-AGGCATTTCTTTGAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTCCTTTTGAAGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121152 622 + 50472720 CCTTTGGATAAGTGAAAGG------TTT-TCTCAGCTCTATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTTAAAGGGGCA-GGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTGAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTATCAAAGAAGTGCTTTCAAGATAATAGAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACCTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------A-AA-----------AAACAAAATTCTGTCACAGTTCACATCACTTCAGGATTGACATTAGCTGC----------TTTTATTTATATTTTTTACTTGTTTTTGGGGGTGCTGGTAGAATGTATGTCACTTGAAAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCTGGGAGATTTGCTGCTCATGCATACATTAGCTT-AGGCA-TTCTTTCAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTACTTTTAAAAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2473763 616 + 13128814 CCTTTGGATAAGTGAAAGT------TTT-TCTCAGATATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-GGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAGGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGCTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACCTCTGAAACCTAACAGTGATGGAACTGAAGCTTTGGAGTTGTTTTAAATAAATACAG---------------------A-AA-----------AAAAAAA--TTTATCACCGTTCACATCACTTCGGGATTGACATTACCTGC----------TT---TTTAT-TTTTTTACTTGTTTTTGGGGATGCTGGTAGAATGTATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATACATTCGCTT-AGGCA-TTCTTTCAACAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTGCTTTTGAAAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7008952 619 - 14377064 CCTTTGGATAAGTGAAAGT------TTT-TCTCAGCTATATGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-GGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGCTTTGCAGTGTTCCATTGCCTGCAGAGGAACAGCAGGACAGACAG-TTTTCCCTCTAAAAGGGCTAAACCTCTGAAACCTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG--------------------AA-AA-----------AAACAAAATTCTGTCACAGTTCACATCACTTCAGGGTTGACATTACCTGC----------TT---TTTAT-TTTTTTACTTGTTTTGGGGGATGCTGGTAGAATGTATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAACTATGTGGAAAATTCGGGGAGATTTGCTGCTCATGCATACATTAGCTT-AGGCA-TTCTTTCAAGAAGCTGCTAGGTTAAGGAAATGCCAGTGCTAAGAAACTGCTTTTGAAAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057292 617 + 9889416 CCTTTGGATAAGTGAAAGT------TTT-TCTCAGCTATGTGACATTTTACATGGGCCATGTCCCAAATGTTCTGTCTC-AAAGTACACAGAAAATGACTTAAAAGGGGCA-GGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAATACACGCAGTTGCTCAACAACGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGTTTTGCAGTGTTCCATCGCCTGCAGAGGAACAGCAGGACAGACGG-TTTTCCCTCTAAAAGGGCTAAACCTCTGAAACTTAACAATGATGGAACTGAAGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------A-AA-----------AAACAAAATTCTGTCACAGTTCACATCACTTCAGGATTGACATTACCTGC----------TTTTATTTAT-TTTTTTACTTGTTTTTGGGGATGCTGGTAGAA--TATGTCACTTGAGAGGTCAAGTCTTC--AAAACAGGAGGAAAGCAGAGAGGTGAAGCAAC--TGTGGAAAATTCAGGGAGATTTGCTGCTCATGCATTCATTAGCTT-AGGCA-TTCTTTCAAGAAGCTGCTAGGTTAAGGAAATACCAGTGCTAAGAAACTGCTTTTGCAAT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16821754 622 + 47401472 CCTTTGGATAAGTGAAAGC------TTTTTCTCAGATATATGACATTTTACATGGGTCATGTTCCAAATGTTCTGTCTCAAAAGTACATAGAAAAGGACTTAAAAGGGGCA-GGGGAGCCAGATTCCCTGTGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACACTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGCTTTATAGCGTTCCATCACCTGCAGAGGAACAGCAGGACAGACCG-TTTTCCCTCTAAAAGGGCTAAACCTCTAAAACCTAACAATGAAGGAACTGAGGCTTTGGAGTTGTTTTAAGTAAATACAG---------------------A-AA-----------AAAAAAA--TCTGTCACAGTTCACATCACTTCAGGATTGACATTACTTGC----------TTTTATTTG--TTTTTTATTTAGTTTTGGTGATGTTGGTAGAATGAATGTCATTTGGGAGGTCAAGCCTTT--ATAACAGGAGGAAAGCAGAGCAGTGAAGCAACTATTTGAAAAATTCAGAGAGATTTGCAGCTTATGCATACATTAGCTTAAGACATTTCTTTCAAGAAGCTGCTAGGTTAAGGAACTTCCAGTGCTCAGAAACTGCTTTTGAAAT i micMur3.chr31 I 116 I 17 s proCoq1.NW_012147997v1 1162869 620 - 2312742 CCTTTGGATAAGTGAAAGC------TTTTTCTCAGCTATATGACATTTTACATGGGTCATGTTCCAAATGTTCTGTCTCCAAAGTACATAGAAAAGGACTTAAAAGGGGCA--GGGAGCCAGATTCCCTGCGGACAGTAATTCTAATTCTGAAGAACACATGCAGTTGCTCAACAACACCGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGCTTTACAGTGTTCTATCACCTGCAGAGCAACAGCAGGACGGACCG-TTTTCCCTCTAAAAGGCCTAAACCTCTAAAACCTAACAATGAAGGAACTGAGGCTTTGGAGTTGTTTCAAGTAAATACAG-----------------------AA-----------AAAAAAA--TCTGTCACAGTTCACATCACTTCAGGATTGACATTACTTGC----------TTTTATTTG--TTTTTTATTCAGTTTTGGTGATGTTGGTAGAATGAATGTCATTTGGGAGGTCAAGCCTTC--ATAACAGGAGGAAAGCAAAGCAGTGAAGCAACTATTTGAAAAATTCAGGGAGATTTGCTGCTTATGCATACATTAGCTGAAGGCATTTCTTTCAAGAAGCTGCTGGGTTAAGGAACTTCCAGTGCTAAGAAACTGCTTTTGAAAT i proCoq1.NW_012147997v1 I 106 I 17 s otoGar3.GL873528 18311615 645 - 38779656 CCTTTGGGTAAGTGATAGCTTTTTTTTTTTTTCAGATATGTGGCATTTTACATGGGTCATGTTCCAAATGTTCTGCCTCAAAAGTACACAGAGAAGGACTTAAAAGGGGCA-GGGGGGCCAGATTCCCTGTAGACGGTAATTCTAATTCTGAAGAACTCACGCAGCTGCTCAGCAGCGCTGCTGGATTGAGAAATGAGGTCTTGAGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGCTTTACAGCGTTCCATCACCTGCAGAGGAACAGCAGGACAGACTG-TGTTCTCTCTAAAAGGGCTAAACCTCTAAAACCTGCCAGCAAAGGGACTGAGGCTTTGGAGTTGTTTTAAGTAAATATGGAAAACAAAAACCATAAAAACAA-AA-----------AAGCAAA--CCTGTCACCATTCACATCACTTCAGGATTGACATTCCTTGC----------TTTTAGTTG---TTTTTATCCAGTTTTGGCGATGTTGGGTGAATGAAGGTCATTTGGGAGGTCAAG--TTC--ATGACA-GAAGAAAGCAAAGCAGGGAAGCGACTATGTGGAAAATTCAGGGAGATTTGCTGCTTGTGTGCATGTTAGGTTAAGGCATTTCTTTCGAGAAGCTGCTAGGTTAAGGAACTTTCAGTGCTAAGAAACTGCTTTTAAAAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11427087 627 + 39895921 CCTTCAGATAATTAAAGGA------TTTCTCTGAGATATGTGACATTTTACATGGGCTGTGTTTCAAATATTCTGTCTC-AAAGTACACAGAAAAAGACTTAAAAGAGACAGGGGGAGCCACATTTCCTGTGAACAGTAATTCTGATTCTGAAGAACACATGTAGTTGTTCAACAACACTGCTGGATTGAGAAATGAGGTCTTGGGAATTACCAAAGAAGTGCTTTCAAGATAATAGAGCTTTACAGTGTTCCATTGCCTGCAGTGGAACAGCAGGGCAGATGG-ATTTCTCCCTAAATGGACTAAGTCTTTAAAACCTGACAATGAAGGAAATGAGGCTTTG-AGTTGTTTTAAGAAAACACAC---------------------A-CA----------CACACAAATTCCTGTCATAGTTCACATCACTTTAGGATTGACATTATTTACCCttttttttttttttttt--ttttttttttAGTTTTTGTGGTATTGGTA-AATGAATGTCACTTGGGGGATCAAGTCTTC--ATGGCAAGAGGAGAGCAGAGACCTGAAGCAACTGTGTGGAAAGTTTAGGGAGAGTTGTTCCTCCTGCATACGTTAGCAT-GGGCATTTCTTTCTCGAAGCTGC-----TAAGGAACTGCCAGTGCTAAGAAACTGTTTTTGAAAA i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 622863 625 - 6883506 M a score=286326.000000 s hg38.chr21_GL383578v2_alt 14693 30 + 63917 AACTTTTTGAAATAATGCATTGCTTACGTG s panTro5.chr21 851397 30 + 33445071 AACTTTTTGAAATAATGCATTGCTTACGTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536778 30 + 46275980 AACTTTTTGAAATAATGCATTGCTTACGTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448835 30 - 13858734 AACTTTTTGAAATAATGCATTGCTTATGTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576179 30 + 32716333 AACTTTTTGAAATCACGCATTGCTTACGTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644917 30 - 185818997 AACTTTTTGAAATAATGCATTGCTTACGTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453311 30 - 192294377 AACTTTTTGAAATAATGCATTGCTTACGTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897967 30 + 9440265 AACTTTTTGAAATAATGCATTGCTTACGTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637790 30 + 21915920 AACTTTTTGAAGTAATGCATTGCTTACGTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282227 30 - 90373283 AACTTTCTGAAATAATGCATTGCTTATGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 610097 30 + 1337817 AACTTTTTGAAATAATGCATTGCTTACGTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588773 30 - 3237654 AACTTTTTGAAATAATGCATTGCTTACTTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121774 28 + 50472720 AAC--ATTGATATAATGTATTGTTTATGTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474379 30 + 13128814 AACTTATTGATATAATGTGTTGTTTACGTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009571 30 - 14377064 AACTTATTTATATAATGTATCATTTACGTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057909 30 + 9889416 AACTTTTTTATATAATGTATTGTTTATGTG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18312260 29 - 38779656 -AACCTTTGAAATCATTTACTCTTTACCTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11427714 26 + 39895921 ---ATTTTGAAAT-ATTCATTCCTTACCTT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163489 17 - 2312742 I e micMur3.chr31 16822376 17 + 47401472 I e dasNov3.JH568778 622863 625 - 6883506 M a score=1142252.000000 s hg38.chr21_GL383578v2_alt 14723 87 + 63917 GGATTCTTTCACCTCCAGAGTTTTTATGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAC--ATTAG s panTro5.chr21 851427 87 + 33445071 GGATTCTTTCACCTCCAGAGTTTTTATGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACGGCAC--ATTAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536808 87 + 46275980 GGATTCTTTCACCTCCAGAGTTTTTATGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAC--ATTAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448865 87 - 13858734 GGATACTTTCACCTCCAGAATTTTTATGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGAAC--ATTAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576209 87 + 32716333 GGATTCTTTCACCTCCAGAATTTTTATGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAC--ATTAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152644947 87 - 185818997 GGATTCTTTCACCTCCAGAATTTTTAGGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAG--AGGAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453341 87 - 192294377 GGATTCTTTCACCTCCAGAATTTTTAGGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAG--AGGAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5897997 87 + 9440265 GGATTCTTTCACCTCCAGAATTTTTAGGACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAG--AGTAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637820 87 + 21915920 GGATTCTTTCACCTCCAGAATTTTTAGGACTACTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAG--ATTAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282257 87 - 90373283 GGATTCTTTCACCTTCAGAGATTTTAGGACTTGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAG--ATTAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 610127 87 + 1337817 GGATTCTTTCACCTCCAGAATTTTTAGGACTACTGGATCCCTTATTATTTGTCATTTTATGAAGGAATTTCAATAACTGCAG--ATTAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588803 87 - 3237654 GGATTCTTTCACCTCCAGAATTTTTAGAACTAGTGGATCCCTTATTATTTGTCATTTTATGAAAGAATTTCAATAACTGCAG--ATTAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121802 87 + 50472720 GGATTATTTTACCTTCAGAAATTTTATGACTAATGGATTCTTTATGAATTGTCATTTTGTGAAAGAATTTAAATAACTGCAG--ATTAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474409 87 + 13128814 GGATTATTTTACCTCCAGAATTTTTATGACTAGTAGATTCCTTATGAATTGTCATTTTGTGAAAGAATTTCAATAACTGCAG--ATTAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009601 87 - 14377064 GGATTCTTTTACCTCCAGAATTTTTATGACTAGTGGATTCCTTATGAATTGTCATTTTGTGAAAGAATTTCAATAACTGCAG--ATAAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6057939 87 + 9889416 GGATTCTTTTACCTCCAGAATTTTTATGACTAGTGGATTCCTTATGAATTGTCATTTTGTGAAAGAATTTCAATAATTGCAG--ATTAG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16822393 87 + 47401472 GGATCCTTCCACTTTCAGAATTTTTATGACTATTGACTCCCATATTATTTGTCATTCCATAAAAGAATTTCAAAAGCTGCAG--ATTAG i micMur3.chr31 I 17 I 39 s proCoq1.NW_012147997v1 1163506 87 - 2312742 GGATCCTTCCACCTCCAGAATTTTTATGACTATTGACTACCATATTATTTGTCATTCCATAAAAGAATTTCAGAAACTGCAG--ATTAG i proCoq1.NW_012147997v1 I 17 I 39 s otoGar3.GL873528 18312289 81 - 38779656 GGATTCTTCTACGTCCAGAATGGTTTCCGCTCTT--CTCCCACA----TTGTCATTCCATAACGGAATTTCAAAAATTGCAG--ATTAA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11427740 86 + 39895921 GGATTCTTCCATGGCCAGCATTTTCATGATTATTGGTT--CTCATTATTTGCCATTTCATAAAAGAATTTCAAAAATTGCAAACATTA- i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 622863 625 - 6883506 M a score=677722.000000 s hg38.chr21_GL383578v2_alt 14810 69 + 63917 CTGTTTATCTAAACTTCCAACCTTTTCTTTTTAGCTTTTGGCCAGGCCTTTTCCAGTATTTACTTATTT s panTro5.chr21 851514 69 + 33445071 CTGTTTATCTAAACTTCCAACCTTTTCTTTTTAGCTTTTGGCCAGGCCTTTTCCAGTATTTACTTATTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536895 69 + 46275980 CTGTTTATCTAAACTTCCAACCTTTTCTTTTTAGCTTTTGGCCAGGCCTTTTCCAGTATTTACTTATTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 448952 69 - 13858734 CTGTTTATCTAAACTTCCAACCTTTTCTTTTTAGCTTTTGGCCAGGCCTTTTCTAGTATCTACTTATTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576296 69 + 32716333 CTGGTTATCTAAACTTCCAACCTTTTCTTTTTAGCTTTCGGCCAGGCCTTTTCTAATATTTACTTATTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645034 69 - 185818997 CTGTTTGTCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453428 69 - 192294377 CTGTTTGTCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898084 69 + 9440265 CTGTTTGTCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637907 69 + 21915920 CTGTTTGTCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282344 69 - 90373283 CTGTTTATCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 610214 69 + 1337817 CTGTTTGTCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588890 69 - 3237654 CAGTTTATCTAAACTTCCATCTTTTTCGTTTTAGCTTTGAGCCAGGCCTTTGCTAATATTTACTTATTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121889 68 + 50472720 CAGTTTATCTAAACTTCCAACTT-TTCTTTTGAGCTTTGAGCCAGGCTTTTTCGAATATTTACTTATTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474496 68 + 13128814 CAGTTTATCTAAACTTCCAACTTGTTATTTTTAGCTTTGAGCCAGGCCTTTTT-AATATTTACTTATTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009688 60 - 14377064 CAGTT----TAAACTTCCAACTTTTTATTTTTAGCTTTGAGCCAGGCCTTTTCTAATA-----TTATTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058026 69 + 9889416 CAGTTTATCTAAACTTCCAACCTTTTCTTTTTAGCTTTGAGCCAGGCCTTTTCTAATATCTACTTGTTT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18312370 63 - 38779656 TGGTTTACATAAACTTCTAACTC-ATCTTTTTAGCTTTGACCCAGGCCTTTCTTGACGTTATCT----- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11427826 60 + 39895921 CAATTCATTTGAACTTGTAACTT------TTCAGCTGTGAGCCAGGCCTCTTCTAATATTTACGTG--- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163593 39 - 2312742 I e micMur3.chr31 16822480 39 + 47401472 I e dasNov3.JH568778 622863 625 - 6883506 M a score=2278436.000000 s hg38.chr21_GL383578v2_alt 14879 174 + 63917 TATGGAAAAACCAAACTT-----TATCACTAGACACAAAATTTAAG---TGAGCGTTGTCTGTCCCTTGAGCTCACCCACC-TTTCTCATCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAGTGTCATCATGGGTGCTCTTCTCAAATAGCTT s panTro5.chr21 851583 174 + 33445071 TATGGAAAAAGCAAACTT-----TATCACTAGACACAAAATTTAAG---TGAGCATTGTCTGTCCCTTGAGCTCACCCACC-TTTCTCATCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACGTCCTGGCACCAATGTCATCATGGGTGCTCTTCTCAAATAGCTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14536964 174 + 46275980 TATGGAAAAAGCAAACTT-----TATCACTAGACACAAAATTTAAG---TGAGCATTGTCTGTCCCTTGAGCTCACCCACC-TTTCTCATCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAATGCCATCATGGGTGCTCTTCTCAAATAGCTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449021 174 - 13858734 TATGGAAAAAGCAAACTT-----TATCACTAGACACAAAATTTAAG---TGAGCATTGTCTGTCCCTTGAGCTCACCCACC-TTTCTCATCAGCCCCGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGTCCCTACATCCTGGCACCAAGGTCATCATGGGTGCTCTTCTCAAATGGCTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576365 174 + 32716333 TATGGAAAAACCAAACTT-----TATCACTAGACACAAAATTTAAG---TGAGCATTGTCTGTCCCTTGAGCTCACCCACC-TTTCTCGTCAGCCTGGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACGAATGTCATCATGGGTGCCATTCTCAAATAGCTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645103 173 - 185818997 TATGG-AAAAACAAACTT-----TATCACAAGACACAAAATTTAAG---AGAGCATGGTCTGTCCCTTGAGCTCACCCAGC-TTTCTCGTCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAATTCCATCATGGGTACCATTCTCAGATAGCTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453497 173 - 192294377 TATGG-AAAAACAAACTT-----TATCACAAGACACAAAATTTAAG---AGAGCATGGTCTGTCCCTTGAGCTCACCCAGC-TTTCTCGTCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAATTCCATCATGGGTACCATTCTCAGATAGCTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898153 173 + 9440265 TATGG-AAAAACAAACTT-----TATCACAATACACAAAATTTAAG---AGAGCATGGTCTGTCCCTTGAGCTCACCCAGC-TTACTCGTCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAATTCCATCATGGGTACCATTCTCAGATAGCTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5637976 173 + 21915920 TATGG-AAAAACAAACTT-----TATCACAAGACACAAAATTTAAG---AGAGCATGGTCTGTCCCTTGAGCTCACCCAGC-TTTCTCGTCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAGTTCCATCATGGGTACCATTCTCAGATAGCTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282413 173 - 90373283 TATGGAAAAAACAAACTT-----TATCACAAGACACAAAATTTAAGATTAGAGCATTGTCTGTCCCGTGAGCTCACCCACC-TTTCTCGTCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAATTCCATCATAGGCGCCATTCTC----AGCTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 610283 173 + 1337817 TATGG-AAAAACAAACTT-----TATCACAAGACACAAAATTTAAG---AGAGCATGGTCTGTCCCTTGAGCTCACCCAGC-TTTCTCGTCAGCCCTGCTCTTGGTGATCCTCTTGCCTCAGTCCGCTTTGGCTCCTACATCCTGGCACCAGTTCCATCATGGGTACCACTCTCAGATAGCTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 588959 170 - 3237654 TATGGAAAAAACTAACTT-----TATCACAAGACACAAAATTTAAG---AGAGCATTGTCTGTCTGTTGAGCTCACCCACC-TTTCTCGTCAGCCCTGCTCTTGTTGATCCTCTTGCCTCAGTCCGCTTTGGCCCCTACATCCTGGCACCAATTCCATCATGGGTGCCATTCTC----AGCTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19121957 174 + 50472720 TATAGAAAGACCAAACTT-----TATCACTAGACACAAAATGTAAG---TGAGCATTGTCTGTCCCTTGAACTCACCCACC-TTTCTTCTCAGCACTGCTCTTGGTGTTCCTCTTGCCTCAGTCTTCTTTGGCCCCTACATCCTGGCACCAGCTCCATCTTGGGTGCTGTTCTCAAATAGCTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474564 174 + 13128814 TATAGAAAGACCAAACTT-----TAACACTAGACACAAAATGTAAG---TGAGCATTGTCTGCCCCTTGAACTCACCCAGC-TTTCTTCTCAGCACTGCTCTTGGTGTTCCTCTTGCCTCAGTCTGCTTTGGCCCCTACATCCTGGCACCAGCTCCATCATGGGTGCCATTCTCAAATAGCTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009748 174 - 14377064 TATAGAAATATCAGACTT-----TATCACTAGACACAAAATGTGAG---TGAGCATTGTCTCTCCCTTGAACTCACCCACC-TTTCTTCTCAGCACTGCTCTTGATGTTCCTCTTGCCTCAGTCTGCTTTGGCCCCTACATCCTGGCACCAGCTCCATCATGGGTGCCATTCTCAAATAGCTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058095 174 + 9889416 TATAGAAAGACCAAACTT-----TATCACTAGACACAAAATCTAAG---TGAGCTTTGTCTGTCCCTTGAACTCACCCACC-TTTCTTCTCAGCACTGCTCTTGGTGTTCCTCTTGCCTCAGTCTGCTTTGGCCCCTACATCCTGGCACCAGCTCCATCATGGGTGCCATTCTCAAATAGCTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16822519 171 + 47401472 TATGGAAAAACCAAACTT-----TATCACTAGACACAAAATTTACG---CGGACAT----TGTCCATTGTGTTCACCCACCTTTCTTTGTCAGCACTGCTGGTGGTGATCTTGTTTCCTCAGTCTGCTCGTGCCCCTACATCCTGGAACCAGTTCCATCATGGGTGCCATTCTCAAATAGCTT i micMur3.chr31 I 39 I 536 s proCoq1.NW_012147997v1 1163632 174 - 2312742 TATGGAAAAAACAAACTT-----TATCACTAGACACAAAATTTAAG---TGGACATTGTCTGTCCATTGTGCTCACTTGCC-TCCCTTGTCAGCACTGCTCTTGGTGATCTTGTTGCCTCAGTCTGCGTGGGCCCCTACACCCTGGCACCAATTCCATCATGGGTGCCATTCTCAAATAGCTT i proCoq1.NW_012147997v1 I 39 I 536 s otoGar3.GL873528 18312433 131 - 38779656 TATGGAAAAACCAAACTT-----GATCACT---------------------------GTCTGTCT-TTGTGCTCAC--ACC-TTCCCTGTTAGCACTGCTCTAGGTGATCCTGTTGCCTCAGTTTG----------------CTGGAGCCAATTCCATCATGGGTGCCATTTTCAAATAGCTT i otoGar3.GL873528 C 0 I 4 s canFam3.chr31 11427886 173 + 39895921 -ATGGATAGACTGAATTTTAGTCTATCACTAGACACAAATTTTAAA----GGACAT----TGTCTTTTGTGCTCACTCACT-TCCCTTGTCAACACTGCTTTTGGTGATTCTGTTGCCTCCATCTGCTCTGGCCCCTACATCCTGGCACCAATTCCATCTTGGCTGCCATTCTCAAGTAGGTT i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 622863 625 - 6883506 M a score=303381.000000 s hg38.chr21_GL383578v2_alt 15053 31 + 63917 TAT-TGTA-TTCTCTCTCTCAGTAA--AGATACAG s panTro5.chr21 851757 31 + 33445071 TAT-TGTA-TTCTCTCTCTCAGTAA--AGACACAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537138 31 + 46275980 TAT-TGTA-TTCTCTCTCTCAGTAA--AGACACAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449195 31 - 13858734 TAT-TGTA-TTCTCTCTCTCAGTAA--AGATACAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576539 31 + 32716333 TAT-TTTA-TTCTCTCTCTCAGTAA--AGATACAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645276 31 - 185818997 TAT-TTTA-TTCTCTCTCTCAGTAA--AGATGCAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453670 31 - 192294377 TAT-TTTA-TTCTCTCTCTCAGTAA--AGATACAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898326 31 + 9440265 TAT-TTTA-TTCTCTCTCTCAGTAA--AGATACAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638149 31 + 21915920 TAT-TTTA-TTCTCTCTCTCAGTAA--AGATACAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282586 31 - 90373283 TAT-TTTA-TTCTCTCTCTCAGGAA--AGATACAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 610456 31 + 1337817 TAT-TTTA-TTCTCTCTCTCAGTAA--AGATACAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 589129 31 - 3237654 TAT-TTTA-TTCTGTCTCTCAGTAA--AGATACAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122131 31 + 50472720 TAG-TTTT-TTCTCTTTTTCAGTAA--AGATACAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474738 32 + 13128814 TAGTTTTT-TTCTCTTTTTCAGTAA--AGATACAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009922 31 - 14377064 TAG-TTTT-TTCTCTTTTTCAGTAA--AGATACGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058269 31 + 9889416 TAG-TTTT-TTCTCTTTTTCAGTAA--AGATACGG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18312568 32 - 38779656 TGT-TTTATTTTTCTTTCTTTGTAA--AAAGATGT i otoGar3.GL873528 I 4 I 1 s canFam3.chr31 11428059 30 + 39895921 ----TTCT-TTTTTCCACTCAGTAAATAGATATGG i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e dasNov3.JH568778 622863 625 - 6883506 M a score=92742.000000 s hg38.chr21_GL383578v2_alt 15084 13 + 63917 GAAATG--GTGGCAt s panTro5.chr21 851788 13 + 33445071 GAAATG--GTGGCAt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537169 13 + 46275980 GAAATG--GTGGCAt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449226 13 - 13858734 GATATG--GTGGCAt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576570 13 + 32716333 GAAATG--GTGGCAt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645307 13 - 185818997 GAAATG--GTGGCAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453701 13 - 192294377 GAAATG--GTGGCAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898357 13 + 9440265 GAAATG--GTGGCAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638180 13 + 21915920 GAAATG--GTGGCAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282617 13 - 90373283 GAAATG--GTGGCat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 610487 13 + 1337817 GAAATG--GTGGCAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 589160 13 - 3237654 GAAATG--GTGGCAT i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18312601 15 - 38779656 GAAAtgtaatagcat i otoGar3.GL873528 I 1 I 346 s canFam3.chr31 11428089 13 + 39895921 GCAACA--GTGGTAT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e dasNov3.JH568778 622863 625 - 6883506 M a score=-28453.000000 s hg38.chr21_GL383578v2_alt 15097 3 + 63917 tc----------------t s panTro5.chr21 851801 12 + 33445071 tc-------tttttttttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537182 9 + 46275980 tt----------ctttttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449239 19 - 13858734 tcttttttttttttttttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576583 6 + 32716333 tc-------------tttt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645320 3 - 185818997 TCt---------------- i rheMac8.chr3 C 0 I 42 s macFas5.chr3 159453714 3 - 192294377 TCt---------------- i macFas5.chr3 C 0 I 42 s macNem1.NW_012019910v1 5898370 2 + 9440265 TC----------------- i macNem1.NW_012019910v1 C 0 I 38 s cerAty1.NW_012002954v1 5638193 2 + 21915920 TC----------------- i cerAty1.NW_012002954v1 C 0 I 28 s chlSab2.chr2 12282630 3 - 90373283 tct---------------- i chlSab2.chr2 C 0 I 77 s manLeu1.NW_012107264v1 610500 3 + 1337817 TCt---------------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 589173 3 - 3237654 TCt---------------- i colAng1.NW_012116933v1 C 0 I 37 s canFam3.chr31 11428102 2 + 39895921 TC----------------- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M a score=30856.000000 s hg38.chr21_GL383578v2_alt 15100 7 + 63917 ttttttt s panTro5.chr21 851813 7 + 33445071 ttttttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537191 7 + 46275980 ttttttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449258 7 - 13858734 ttttttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576589 7 + 32716333 ttttttt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645365 7 - 185818997 ttatttt i rheMac8.chr3 I 42 C 0 s macFas5.chr3 159453759 7 - 192294377 ttatttt i macFas5.chr3 I 42 C 0 s macNem1.NW_012019910v1 5898410 7 + 9440265 ttatttt i macNem1.NW_012019910v1 I 38 C 0 s cerAty1.NW_012002954v1 5638223 7 + 21915920 ttatttt i cerAty1.NW_012002954v1 I 28 C 0 s manLeu1.NW_012107264v1 610503 7 + 1337817 ttatttt i manLeu1.NW_012107264v1 C 0 I 1412 s colAng1.NW_012116933v1 589213 7 - 3237654 ttatttt i colAng1.NW_012116933v1 I 37 I 2 s canFam3.chr31 11428104 7 + 39895921 TTATACT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M e chlSab2.chr2 12282633 77 - 90373283 I a score=52116.000000 s hg38.chr21_GL383578v2_alt 15107 12 + 63917 ttgagatgaagt s panTro5.chr21 851820 12 + 33445071 ttgagacggagt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537198 12 + 46275980 ttgagacggagt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449265 12 - 13858734 ttgaggcggagt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576596 12 + 32716333 ttgagacggagt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645372 12 - 185818997 ttgagatggagt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453766 12 - 192294377 ttgagatggagt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898417 12 + 9440265 ttgagatggagt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638230 12 + 21915920 ttgagatggagt i cerAty1.NW_012002954v1 C 0 C 0 s colAng1.NW_012116933v1 589222 12 - 3237654 ttgagatggagt i colAng1.NW_012116933v1 I 2 C 0 s canFam3.chr31 11428111 12 + 39895921 TTGGCATGAAGT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M e chlSab2.chr2 12282633 77 - 90373283 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=107993.000000 s hg38.chr21_GL383578v2_alt 15119 28 + 63917 ctggctctgtctcccaggctggagtgca s panTro5.chr21 851832 28 + 33445071 ctggctctgtcgcccaggctggagtgca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537210 28 + 46275980 ctggctctgtcgcccaggctggagtgca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449277 28 - 13858734 ctggctctgtcacctaggctggagtgca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576608 28 + 32716333 ctcgctctgtcgcccaggctggagtgca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645384 28 - 185818997 ctcgctctgtcgcccaggctggagtgcg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453778 28 - 192294377 ctcgctctgtcgcccaggctggagtgcg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898429 28 + 9440265 ctcgctctgtcgcccaggctggagtgcg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638242 28 + 21915920 ctcgctctgtcgccctggctggagtgcg i cerAty1.NW_012002954v1 C 0 C 0 s colAng1.NW_012116933v1 589234 28 - 3237654 ctcgctctgtcgcccaggctggagtgca i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428123 0 + 39895921 C e chlSab2.chr2 12282633 77 - 90373283 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=551678.000000 s hg38.chr21_GL383578v2_alt 15147 130 + 63917 gtggcgcgatctc-gctcactgcaagctccgccttccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccatgcctggccaatttttt-----gtatttttattaga s panTro5.chr21 851860 130 + 33445071 gtggcgcgatctc-gctcactgcaagctccacctcccgggttcacggcattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccaagcctggctaatttttt-----gtatttttattaga i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537238 130 + 46275980 gtggcgcgatctc-gctcactgcaagctccacctcccgggttcacggcattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccaagcctggctaatttttt-----atatttttattaga i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449305 130 - 13858734 gtggcgcgatctc-gctcactgcaacctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtacccgccaccaagcctcgctaatttttt-----gtagttttagtaga i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576636 129 + 32716333 gtggtgcaatctc-gctca-tgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacgcgctgctaatttttt-----gtatttttagtaga i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645412 129 - 185818997 gtggcgcgatctccgctcactgcaagctccgccccccgggttcccgccattctcctgcctcagcctcccgagtagctggaaccacaggcg-ccgccaccacgcccggctaatttttt-----gta-ttttagtaga i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453806 129 - 192294377 gtggcgcgatctccgctcactgcaagctccgccccccgggttcccgccattctcctgcctcagcctcccgagtagctggaaccacaggcg-ccgccaccacgcccggctaatttttt-----gta-ttttagtaga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898457 129 + 9440265 gtggcgcgatcttggctcactgcaagctccgtcccccgggttcccgccattctcctgcctcagcctcccgagtagctggaaccacaggcg-ccgccaccacgcccggctaatttttt-----gta-ttttagtaga i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638270 129 + 21915920 gtggcgcgatctcggctcactgcaagctccgccccccgggttcccgccattctcctgcctcagcctcccgagtagctgcaaccacaggcg-ccgccacctcgcccggctagtttttt-----gta-ttttagtagg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282710 131 - 90373283 gtggcgcgatctcggctcactgcaagctccgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggaccacaggcg-ccaccaccacgcccggctaatttttt---tcgta-ttttagtaga i chlSab2.chr2 I 77 C 0 s colAng1.NW_012116933v1 589262 134 - 3237654 gtggcgccatctctgctcactgcaagctccgcctcccgggttcccgccattctcctgcctcagcctcccgagtagctgggaccacaggcg-ccgccaccacgcctggctaatttttttttttgta-ttttagtaga i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428123 0 + 39895921 C e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=42033.000000 s hg38.chr21_GL383578v2_alt 15277 10 + 63917 gagagggttt s panTro5.chr21 851990 10 + 33445071 gagggggttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537368 10 + 46275980 gagggggttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449435 10 - 13858734 gagggggttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576765 10 + 32716333 gacaggtctt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645541 10 - 185818997 gacggggttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453935 10 - 192294377 gacggggttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898586 10 + 9440265 gacggggttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638399 10 + 21915920 gacggagttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282841 10 - 90373283 gacggggttt i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589396 10 - 3237654 ggcggggttt i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11428123 10 + 39895921 GAGAATGTTT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=479273.000000 s hg38.chr21_GL383578v2_alt 15287 101 + 63917 caccgtgttagccaggatggtctggatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggataacaggcgtgagccaccgcgcccggt s panTro5.chr21 852000 101 + 33445071 caccgtgttagccaggatggtctcgatctcctgacctcgtgattcgcccgcctcggcctcccaaagtgctgggataacaggcgtgagccaccgcgcccggt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537378 101 + 46275980 caccgtgttagccaggatggtctcgatctcctgacctcgtgattcgcccgcctcggcctcccaaagtgctgggataacaggcgtgagccaccgcgcccggt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449445 101 - 13858734 caccgtgttagccaggatggtctcgatctcctgacctcgtaatccgcccacctcggcctcccaaagtgctgggataacaggcgtgagccaccgcgccaggt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576775 101 + 32716333 caccgtgttaggcaggatggtctccatctcctgacctcgtgatccgcccgcctctgcctcccaaagtgctgggattacaggcgtgagccaccactcccggt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645551 101 - 185818997 caccgtgttagccaggatggtctcgatctcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggcttgagccactgcgcccggt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159453945 101 - 192294377 caccgtgttagccaggatggtctcgatctcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggcttgagccactgcgcccggt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898596 101 + 9440265 caccgtgttagccaggatggtctcgatttcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggcttgagccactgcgcccggt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638409 101 + 21915920 caccgtgttagccaggatggtctccatctcctgacctcatgatccgcccgccttggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282851 101 - 90373283 caccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgccttggcctcccaaagtcctggaattataggcttgagccaccgcgcccggt i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589406 101 - 3237654 cactgtgttagccaggatggtctcgatctcctgacctcatgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagt i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e otoGar3.GL873528 18312616 346 - 38779656 I e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428133 0 + 39895921 C e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=440.000000 s hg38.chr21_GL383578v2_alt 15388 1 + 63917 -c s panTro5.chr21 852101 1 + 33445071 -c i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537479 1 + 46275980 -c i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449546 1 - 13858734 -c i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576876 1 + 32716333 -c i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645652 1 - 185818997 -c i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454046 1 - 192294377 -c i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898697 1 + 9440265 -c i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638510 1 + 21915920 -c i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282952 1 - 90373283 -c i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589507 1 - 3237654 -c i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18312962 1 - 38779656 G- i otoGar3.GL873528 I 346 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e aotNan1.NW_018487195v1 6058300 0 + 9889416 C e cebCap1.NW_016107322v1 7009953 0 - 14377064 C e saiBol1.JH378168 2474770 0 + 13128814 C e calJac3.chr21 19122162 0 + 50472720 C e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428133 0 + 39895921 C e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=63648.000000 s hg38.chr21_GL383578v2_alt 15389 7 + 63917 GAAATGG s panTro5.chr21 852102 7 + 33445071 GAAATCG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537480 7 + 46275980 GAAATCG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449547 7 - 13858734 GAAATGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576877 7 + 32716333 GAAATGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645653 7 - 185818997 GAAATGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454047 7 - 192294377 GAAATGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898698 7 + 9440265 GAAATGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638511 7 + 21915920 GAAATGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282953 7 - 90373283 AAAATGG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589508 7 - 3237654 GAAATGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122162 7 + 50472720 GAAGTGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474770 7 + 13128814 GAAGTGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009953 7 - 14377064 GAAGTGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058300 7 + 9889416 GAAGTGG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18312963 7 - 38779656 GAAATGA i otoGar3.GL873528 C 0 C 0 e proCoq1.NW_012147997v1 1163806 536 - 2312742 I e micMur3.chr31 16822690 536 + 47401472 I e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428133 0 + 39895921 C e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=146430.000000 s hg38.chr21_GL383578v2_alt 15396 15 + 63917 TGGCATTCTTTTACG s panTro5.chr21 852109 15 + 33445071 TGGCATTCTTTTACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537487 15 + 46275980 TGGCATTCTTTTACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449554 15 - 13858734 TGGCATTCTTTTACT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576884 15 + 32716333 TGGCATTCTTATACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645660 15 - 185818997 TGGCATTCTTATTCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454054 15 - 192294377 TGGCATTCTTATTCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898705 15 + 9440265 TGGCATTCTTATTCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638518 15 + 21915920 TGGCATTCTTATTCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282960 15 - 90373283 TGGCATTCTTATTCT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589515 15 - 3237654 TGGCATTCTTATTCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122169 15 + 50472720 TGGCATTCTTACACT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474777 15 + 13128814 TGGCATTATTACACT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009960 15 - 14377064 TGGCATTCTTACACT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058307 15 + 9889416 TAGCATTCTTACACT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1164342 15 - 2312742 TGGTATTCTTATACT i proCoq1.NW_012147997v1 I 536 C 0 s otoGar3.GL873528 18312970 15 - 38779656 CGGCATTCTTACACT i otoGar3.GL873528 C 0 C 0 e micMur3.chr31 16822690 536 + 47401472 I e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428133 0 + 39895921 C e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=269205.000000 s hg38.chr21_GL383578v2_alt 15411 22 + 63917 TTGGCATGAGATAGGAATGTTT s panTro5.chr21 852124 22 + 33445071 TTGGCATGAGATAGGAATGTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537502 22 + 46275980 TTGGCATGAGATAGGAATGTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449569 22 - 13858734 TTGGCATGAGATAGGAATGTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576899 22 + 32716333 TTGGCATGAGATAGGAATGTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645675 22 - 185818997 TTGGCATGAGGTAGGAATGTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454069 22 - 192294377 TTGGCATGAGGTAGGAATGTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898720 22 + 9440265 TTGGCATGAGGTAGGAATGTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638533 22 + 21915920 TTGGCTTGAGGTAGGAATGTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282975 22 - 90373283 TTGGCATGAGGTAGGAATGTTT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589530 22 - 3237654 TTGGCATCAGGTAGGAGTGTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122184 22 + 50472720 TTGGCATGAGGTAGGAATCTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474792 22 + 13128814 TTGGCATGAGGTAGGGATGTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009975 22 - 14377064 TTAGCATAAGGTAGAAATGTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058322 22 + 9889416 TTGGCAGGAGGTAGGAATGTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823226 22 + 47401472 TTGGCATGAGGTGAGAATGTTT i micMur3.chr31 I 536 C 0 s proCoq1.NW_012147997v1 1164357 22 - 2312742 TTGGCATGAGGTGAGAATGTTT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18312985 22 - 38779656 ATGGCATGAGGTAAAAATGTTT i otoGar3.GL873528 C 0 C 0 e dasNov3.JH568778 622863 625 - 6883506 M e canFam3.chr31 11428133 0 + 39895921 C e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=1284256.000000 s hg38.chr21_GL383578v2_alt 15433 103 + 63917 ATATTTAATTTGTGAACCCCAAAATGTGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCACCTGCTGGAGCTCTACCTGATGCC-CCTTC s panTro5.chr21 852146 100 + 33445071 TTATTTAATTTGTGAACCCCAAAATGTGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTCTACCTGATGCC-CCTTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537524 100 + 46275980 TTATTTAATTTGTGAACCCCAAAATGTGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTCTACCTGATGCC-CCTTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449591 100 - 13858734 ATATTTAAGTTGTGAACCCCAAAATGTGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCAA---CTGGAGCTCTACCTGATGCC-CCTTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1576921 100 + 32716333 ACATTTAATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCGC---CTGGAGCTCTACCTGATGCC-CCTTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645697 100 - 185818997 ATATTTAATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTCTACCTGATGCC-CCTTC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454091 100 - 192294377 ATATTTAATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTCTACCTGATGCC-CCTTC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898742 100 + 9440265 ATATTTAATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTCTACCTGATGCC-CCTTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638555 100 + 21915920 ATATTTAATTTGTGAACCCCAAAATGTGATCTTGAAGCAAAGATTTATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTTTACCTGATGCC-CCTTC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12282997 99 - 90373283 -TATTTAATTTGTGAACTCCAAAATATGATCTTGAAGCAAAGACTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTTTACCTGATGCC-CCTTC i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589552 100 - 3237654 ATATTTAATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGACTGATA---GCAATGGAAGTAGCAGGTGAAATCAC---CTGGAGCTCTACCTGATGCC-CCTTC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122206 100 + 50472720 ATATTTGTTTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATTGATA---GCAGTGGAAGTAGCAGGTGAAATCAC---CTGGAGCCCTACCTGATGCT-CCTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474814 100 + 13128814 ATATTTGATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATTGATA---GCAGTGGAAGTAGCAGGTGAAATCAC---TTGGAGCCCTACCTCATGCC-CCTTC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7009997 100 - 14377064 ATATTTGATTTGTGAACTCCAAAATATGACCTTGAAGCAAAGATTGACA---GCAGTGGAAGTAGCAGGTGAGATCAC---CTGGAGCCCTACCTGATGCC-CCTTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058344 100 + 9889416 ATGTTTGATTTGTGAACCCCAAAATATGATCTTGAAGCAAAGATCGATA---GCAGTGGAAGTAGCAGTTGAAATCAC---CTGGTGCCCTACCTGATGCC-CCTTC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823248 100 + 47401472 ATATTTGATGTGTGAATCCCAAAATATGATCTTGAAGCAAAGATTGATA---ATGGTGAAAGTGGTAAGTGAAATTAC---ATGAAGCCCCATCTGATGCC-CCTTC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1164379 99 - 2312742 GTATTTGATCTGTGAATCCAAAATTATGATCTTGAAGCAAAGATTGATA---ATGGTGAAAGTGGTAAGTGAAATTAC---ATGAAG-CCTATCTGATGCC-CCTTC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313007 99 - 38779656 ATATTTGATCTGTGAACTCCAAAGTACAATCATACAGAAAAGACTGACA---ATGATTAAAGTGGCAAGTGAAATTAC---ATAGAGCCCTACCTGATG-C-CCTTC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428133 103 + 39895921 ACATTTGATTTGTGGATCCCAAATTACAATTTTGAAGCAAAGACTGATGATTGTGGTGAAAGTGATAGGTGAAATTCT---ATGGAGC-CTACCCTGTGCCACTTTC i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 622863 625 - 6883506 M e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=303281.000000 s hg38.chr21_GL383578v2_alt 15536 21 + 63917 AACTAATGCACCATAAAAATT s panTro5.chr21 852246 21 + 33445071 AACTAATGCACCATAAAAATT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537624 21 + 46275980 AACTAATGCACCATAAAAATT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449691 21 - 13858734 AACTAATGCACCATAAAAATT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577021 21 + 32716333 AACTAATGCACTGTAAAAATT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645797 21 - 185818997 AACAAATGCACCATAAACATT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454191 21 - 192294377 AACAAATGCACCATAAACATT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898842 21 + 9440265 AACAAATGCACCATAAACATT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638655 21 + 21915920 AACAAATGCACCATAAACATT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283096 21 - 90373283 AACAAATGCACCATAAACATT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589652 21 - 3237654 AACAAATGCACCATAAACATT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122306 21 + 50472720 AATAAATGCACCATAAAAATT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2474914 21 + 13128814 AACAAATGCACCATAAAAATT i saiBol1.JH378168 C 0 I 301 s cebCap1.NW_016107322v1 7010097 21 - 14377064 AACAAATGCACCATAAAAATT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058444 21 + 9889416 AACAAATGCACCATAAAAATT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823348 21 + 47401472 AACAAATGCACCATAAAAATT i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1164478 21 - 2312742 AACAAATGCACCATAAAAATT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313106 21 - 38779656 CACCAATGCCATGTAAAAATT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428236 21 + 39895921 AACAAATACACCATAAAAGTC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623490 21 - 6883506 AACAAATACACCATAAAAATT i dasNov3.JH568778 M 625 C 0 e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=243671.000000 s hg38.chr21_GL383578v2_alt 15557 19 + 63917 CTCATCCTCTTCTTAGTCA s panTro5.chr21 852267 19 + 33445071 CTCATCCTCTTCTTAGTCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537645 19 + 46275980 CTCATCCTCTTCTTAGTCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449712 19 - 13858734 CTCATCCTCTTCTTAGTCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577042 19 + 32716333 CTCATCCTCTTCTTAGTCA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645818 19 - 185818997 CTCATCCTCTTCTTAGTCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454212 19 - 192294377 CTCATCCTCTTCTTAGTCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898863 19 + 9440265 CTCATCCTCTTCTTAGTCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638676 19 + 21915920 CTCATCCTCTTCTTAGTCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283117 19 - 90373283 CTCATCCTCTTCTTAGTCA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589673 19 - 3237654 CTCATCCTCTTCTTAGTCA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122327 19 + 50472720 CTCATCCTCTTCTTAGTCA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475236 19 + 13128814 TTCATCCTCTTCCTAGTCA i saiBol1.JH378168 I 301 C 0 s cebCap1.NW_016107322v1 7010118 16 - 14377064 CTCATCCTCT---TAGTCA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058465 19 + 9889416 CTCATCCTCTTCTTAGTCA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823369 19 + 47401472 CTCATACTCTTGTTTGTTA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1164499 19 - 2312742 CTCATACTCTTGTTAGTTA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313127 19 - 38779656 CTCCTACTCTTATTAGTTA i otoGar3.GL873528 C 0 I 182 s canFam3.chr31 11428257 15 + 39895921 TTCATCCTCTCATTG---- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623511 19 - 6883506 GTCACCCTGTTATTTGTCA i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=69855.000000 s hg38.chr21_GL383578v2_alt 15576 7 + 63917 GATCTAG s panTro5.chr21 852286 7 + 33445071 GATCTAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537664 7 + 46275980 GATCTAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449731 7 - 13858734 GATCTAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577061 7 + 32716333 GATCTAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645837 7 - 185818997 GATCTAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454231 7 - 192294377 GATCTAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898882 7 + 9440265 GATCTAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638695 7 + 21915920 GTTCTAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283136 7 - 90373283 GATCTAG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589692 7 - 3237654 GATCTAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122346 7 + 50472720 GATCTAC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475255 7 + 13128814 GATCTAC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010134 7 - 14377064 GATCTAC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058484 7 + 9889416 GATCTAC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823388 7 + 47401472 TGTATAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1164518 7 - 2312742 TATATAG i proCoq1.NW_012147997v1 C 0 C 0 s canFam3.chr31 11428272 7 + 39895921 GATTGAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623530 7 - 6883506 GATCTAC i dasNov3.JH568778 C 0 C 0 e otoGar3.GL873528 18313146 182 - 38779656 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=494891.000000 s hg38.chr21_GL383578v2_alt 15583 38 + 63917 AGGGAAACCCACTTCACTA---CGTTGTCTGAATGTGACTT s panTro5.chr21 852293 38 + 33445071 AGGGAAAACCACTTCACTA---CGTTGTCTGAATGTGACTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537671 38 + 46275980 AGGGAAAACCACTTCACTA---CGTTGTCTGAATGTGACTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449738 38 - 13858734 AGGGAAACCCACTTCACTA---CGTTGTCTGAATGTGACTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577068 38 + 32716333 AGGGAAACCCACTTCACTA---CGTTTTCTGAATGTGACTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645844 38 - 185818997 AAGGAAACCCACTTTACTG---CTTTGTCTGAATGTGACTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454238 38 - 192294377 AAGGAAACCCACTTTACTG---CTTTGTCTGAATGTGACTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898889 38 + 9440265 AAGGAAACCCACTTTACTG---CTTTGTCTGAATGTGACTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638702 38 + 21915920 AGGGAAACCCACTTCACTG---CTTTGTCTGAATGTGACTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283143 38 - 90373283 AGGGAAACCCACTTCACTG---CTTTGTCTGAATGTGACTT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589699 38 - 3237654 AGGGAAACCCACTTCACTG---CTTTGTCTGAATGTGACTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122353 38 + 50472720 AGGGAAACCCACTTCACTG---CTTTGTCTGAAAGTGACTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475262 38 + 13128814 AGGGAAATCCACTTCACTG---CTTTGTCTGAATGTGACTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010141 38 - 14377064 AGGGAAACCCACTTCACTG---CTTTGTCTGAATGTGACTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058491 37 + 9889416 GGGGAAACCCACTTCACTG---CTTTGTCTGAATGT-ACTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823395 38 + 47401472 AGGAAAATCTATTTCATGA---CTTTGTCTGAATGTGACTT i micMur3.chr31 C 0 I 161 s proCoq1.NW_012147997v1 1164525 38 - 2312742 AGGGAAATCTATTTCATTA---CTTTGTCTGAATGTGATTT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313328 38 - 38779656 AGAGACATCTATTTCACAA---CCTTGTCTGAGTGTCTCTT i otoGar3.GL873528 I 182 C 0 s canFam3.chr31 11428279 41 + 39895921 GGGGAAGCCCTCTTCACTATTTCTTTGTCTGGATGTGACTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623537 39 - 6883506 -ATTTAAACCTCTTCACTATTTCTTTGTCTGCATGTGACT- i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=151113.000000 s hg38.chr21_GL383578v2_alt 15621 14 + 63917 GCAGTGAACT---AAAA s panTro5.chr21 852331 14 + 33445071 GCAGTGAACT---AAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537709 14 + 46275980 GCAGTGAACT---AAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449776 15 - 13858734 GCAGTGAACT--AAAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577106 17 + 32716333 GTAGTGAACTAAAAAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645882 14 - 185818997 GTAGTGAACT---AAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454276 14 - 192294377 GTAGTGAACT---AAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898927 14 + 9440265 GTAGTGAACT---AAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638740 14 + 21915920 GTGGTGAACT---AAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283181 14 - 90373283 GTAGTGAACT---AAAA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589737 14 - 3237654 GTAGTGAACT---AAAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122391 14 + 50472720 GTAGTGAACT---AAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475300 14 + 13128814 GTAGTGAACT---AAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010179 14 - 14377064 GTAGTGAACT---AAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058528 14 + 9889416 GTAGTGAACT---GAAA i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1164563 11 - 2312742 ---GTACAGT---AAAA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313366 14 - 38779656 GTGGTGAAGT---AAAA i otoGar3.GL873528 C 0 I 314 s canFam3.chr31 11428320 14 + 39895921 GTAGTTATCT---AAAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623576 14 - 6883506 GTGCTTATCG---AAAA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16823433 161 + 47401472 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=388604.000000 s hg38.chr21_GL383578v2_alt 15635 33 + 63917 AAAA-TATGAAATTCTCATCCTTCGTTTAAGATA s panTro5.chr21 852345 33 + 33445071 AAAA-TATGAAATTCTCATCCTTCGTTTAAGATA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537723 33 + 46275980 AAAA-TATGAAATTCTCATCCTTCGTTTAAGATA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449791 33 - 13858734 AAAA-TATGAAATTCTCATCCTTCGTTTAAGATA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577123 33 + 32716333 AAAA-TATGAAATTCTCATCCTTCATTTAAGATA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645896 33 - 185818997 AAAT-TATGAAATTCTCATCCTTCATTTAAGATA i rheMac8.chr3 C 0 I 7 s macFas5.chr3 159454290 33 - 192294377 AAAT-TATGAAATTCTCATCCTTCATTTAAGATA i macFas5.chr3 C 0 I 7 s macNem1.NW_012019910v1 5898941 33 + 9440265 AAAT-TATGAAATTCTCATCCTTCATTTAAGATA i macNem1.NW_012019910v1 C 0 I 7 s cerAty1.NW_012002954v1 5638754 33 + 21915920 AAAT-TATGAAATTCTCATCCTTCATTTAAGATA i cerAty1.NW_012002954v1 C 0 I 7 s chlSab2.chr2 12283195 33 - 90373283 AAAT-TATGAAATTCTCATCCTTCATTTAAGATA i chlSab2.chr2 C 0 I 15 s colAng1.NW_012116933v1 589751 33 - 3237654 AAAT-TATGAAATTCTCATCCTTCATTTAAGGTA i colAng1.NW_012116933v1 C 0 I 7 s calJac3.chr21 19122405 34 + 50472720 ACATATATGAAACTCTCATCCTTTATGTAAGATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475314 34 + 13128814 ACATATATGAAATTCTCATCCTTCATGTAAGATA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010193 34 - 14377064 ACATATATGAAATTCTCATCCTTCATGTAAGATA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058542 34 + 9889416 ACATATATGAAATTTTCATCCTTCATGTAAGATA i aotNan1.NW_018487195v1 C 0 I 17 s proCoq1.NW_012147997v1 1164574 33 - 2312742 TGAA-GATGAGATTGTCATTCTTCATTTAAGATA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313694 33 - 38779656 aaaa-aaaGAAATTCTCATTCTTCATTTAAGAAA i otoGar3.GL873528 I 314 C 0 s canFam3.chr31 11428334 33 + 39895921 AGAT-GATGGGATTCTCATTCTTCATTTAAGATA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623590 33 - 6883506 AGAA-TTTGAGATTCTCATCTTTCATTTAAGATA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16823433 161 + 47401472 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=10424.000000 s hg38.chr21_GL383578v2_alt 15668 1 + 63917 A s panTro5.chr21 852378 1 + 33445071 A i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537756 1 + 46275980 A i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449824 1 - 13858734 A i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577156 1 + 32716333 A i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645936 1 - 185818997 A i rheMac8.chr3 I 7 C 0 s macFas5.chr3 159454330 1 - 192294377 A i macFas5.chr3 I 7 C 0 s macNem1.NW_012019910v1 5898981 1 + 9440265 A i macNem1.NW_012019910v1 I 7 C 0 s cerAty1.NW_012002954v1 5638794 1 + 21915920 A i cerAty1.NW_012002954v1 I 7 C 0 s colAng1.NW_012116933v1 589791 1 - 3237654 A i colAng1.NW_012116933v1 I 7 C 0 s calJac3.chr21 19122439 1 + 50472720 A i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475348 1 + 13128814 A i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010227 1 - 14377064 A i cebCap1.NW_016107322v1 C 0 C 0 s proCoq1.NW_012147997v1 1164607 1 - 2312742 A i proCoq1.NW_012147997v1 C 0 I 117 s otoGar3.GL873528 18313727 1 - 38779656 G i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428367 1 + 39895921 A i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623623 1 - 6883506 A i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16823433 161 + 47401472 I e aotNan1.NW_018487195v1 6058576 17 + 9889416 I e chlSab2.chr2 12283228 15 - 90373283 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=-2415.000000 s hg38.chr21_GL383578v2_alt 15669 4 + 63917 GTTC s panTro5.chr21 852379 4 + 33445071 GTTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537757 4 + 46275980 GTTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449825 4 - 13858734 GTTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577157 4 + 32716333 GTTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645937 4 - 185818997 GCTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454331 4 - 192294377 GCTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898982 4 + 9440265 GCTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638795 4 + 21915920 GGTA i cerAty1.NW_012002954v1 C 0 C 0 s colAng1.NW_012116933v1 589792 2 - 3237654 GC-- i colAng1.NW_012116933v1 C 0 I 5 s calJac3.chr21 19122440 4 + 50472720 GCCT i calJac3.chr21 C 0 I 4 s saiBol1.JH378168 2475349 4 + 13128814 GACT i saiBol1.JH378168 C 0 I 5 s cebCap1.NW_016107322v1 7010228 4 - 14377064 GACT i cebCap1.NW_016107322v1 C 0 I 12 s otoGar3.GL873528 18313728 3 - 38779656 -ATA i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11428368 4 + 39895921 GACT i canFam3.chr31 C 0 I 10 s dasNov3.JH568778 623624 4 - 6883506 GACT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1164608 117 - 2312742 I e micMur3.chr31 16823433 161 + 47401472 I e aotNan1.NW_018487195v1 6058576 17 + 9889416 I e chlSab2.chr2 12283228 15 - 90373283 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=-3364.000000 s hg38.chr21_GL383578v2_alt 15673 1 + 63917 -C s panTro5.chr21 852383 1 + 33445071 -C i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537761 1 + 46275980 -C i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449829 1 - 13858734 -C i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577161 1 + 32716333 -T i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645941 1 - 185818997 -T i rheMac8.chr3 C 0 I 2 s macFas5.chr3 159454335 1 - 192294377 -T i macFas5.chr3 C 0 I 2 s macNem1.NW_012019910v1 5898986 1 + 9440265 -T i macNem1.NW_012019910v1 C 0 I 2 s cerAty1.NW_012002954v1 5638799 1 + 21915920 -T i cerAty1.NW_012002954v1 C 0 I 2 s calJac3.chr21 19122448 1 + 50472720 -T i calJac3.chr21 I 4 I 6 s saiBol1.JH378168 2475358 1 + 13128814 -T i saiBol1.JH378168 I 5 I 6 s otoGar3.GL873528 18313732 1 - 38779656 -T i otoGar3.GL873528 I 1 C 0 s dasNov3.JH568778 623628 1 - 6883506 A- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1164608 117 - 2312742 I e micMur3.chr31 16823433 161 + 47401472 I e aotNan1.NW_018487195v1 6058576 17 + 9889416 I e cebCap1.NW_016107322v1 7010232 12 - 14377064 I e canFam3.chr31 11428372 10 + 39895921 I e chlSab2.chr2 12283228 15 - 90373283 I e colAng1.NW_012116933v1 589794 5 - 3237654 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=-2567.000000 s hg38.chr21_GL383578v2_alt 15674 2 + 63917 TC s panTro5.chr21 852384 2 + 33445071 TC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537762 2 + 46275980 TC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449830 2 - 13858734 TC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577162 2 + 32716333 TC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645944 2 - 185818997 GA i rheMac8.chr3 I 2 C 0 s macFas5.chr3 159454338 2 - 192294377 GA i macFas5.chr3 I 2 C 0 s macNem1.NW_012019910v1 5898989 2 + 9440265 GA i macNem1.NW_012019910v1 I 2 C 0 s cerAty1.NW_012002954v1 5638802 2 + 21915920 GA i cerAty1.NW_012002954v1 I 2 C 0 s chlSab2.chr2 12283243 2 - 90373283 GA i chlSab2.chr2 I 15 C 0 s colAng1.NW_012116933v1 589799 2 - 3237654 GA i colAng1.NW_012116933v1 I 5 C 0 s otoGar3.GL873528 18313733 1 - 38779656 -A i otoGar3.GL873528 C 0 I 14 s canFam3.chr31 11428382 2 + 39895921 GA i canFam3.chr31 I 10 C 0 s dasNov3.JH568778 623629 2 - 6883506 TA i dasNov3.JH568778 C 0 I 9 e proCoq1.NW_012147997v1 1164608 117 - 2312742 I e micMur3.chr31 16823433 161 + 47401472 I e aotNan1.NW_018487195v1 6058576 17 + 9889416 I e cebCap1.NW_016107322v1 7010232 12 - 14377064 I e saiBol1.JH378168 2475359 6 + 13128814 I e calJac3.chr21 19122449 6 + 50472720 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=976036.000000 s hg38.chr21_GL383578v2_alt 15676 95 + 63917 ATTGAAAAGAACTAGGAA------ATAGTATATCAAT-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGGTCTTCTTGAATCATCCCGATA s panTro5.chr21 852386 95 + 33445071 ATTGAAAAGAACTAGGAA------ATAGTATATCAAT-CTTCAATCATTTGAACAAAATATTCATGATGGTAAATAGGAGGTCTTCTTGAATCATCCCGATA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537764 95 + 46275980 ATTGAAAAGAACTAGGAA------ATAGTATATCAAT-CTTCAATCATTTGAACAAAATATTCATGATGGTAAATAGGAGGTCTTCTTGAATCATCCCGATA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449832 92 - 13858734 ATTGAAAAGAACTAGGAA------ATAGAATATCAAT-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGG---TCTTGAATCATCCCGATA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577164 95 + 32716333 ATTGAAAAGAACTAGGAA------ATAGTATATCAAT-CTTCAATCATTTGAACAAAGTGTTCATGATGGTAAATAGGAGGTCTTCTTGAATCATCCCAATA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152645946 92 - 185818997 ATTGAAAAGAACTAGGAA------ATAGTATATCAAC-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGG---TCTTGAATCGTTCCCATA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454340 92 - 192294377 ATTGAAAAGAACTAGGAA------ATAGTATATCAAC-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGG---TCTTGAATCGTTCCCATA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5898991 92 + 9440265 ATTGAAAAGAACTAGGAA------ATAGTATATCAAC-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGG---TCTTGAATCGTTCCCATA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638804 92 + 21915920 ATTTAAAAGAACTAGGAA------ATAGTATATCAAC-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGG---TCTTGAATCGTTCCGATA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283245 92 - 90373283 ATTGAAAAGAACTAGGAA------ATAGTATATCAAC-CTTCAATCATTTGAACAAAATGTTCGTGATGGTAAATAGGAGG---TCTTGAATCATTCCGATA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589801 92 - 3237654 ATTGAAAAGAACTAGGAA------ATAGTATATCAAT-CTTCAATCATTTGAACAAAATGTTCATGATGGTAAATAGGAGG---TCTTGAATCGTTCCGATA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122455 95 + 50472720 ATGGAAAAGAACTGGGAA------ATATCATATCAAC-TTTCAATCATTTGAACAAAATGTTCAAGATAGTAAGTAGGAGATCTTCTTGAATCATCCCATCA i calJac3.chr21 I 6 C 0 s saiBol1.JH378168 2475365 92 + 13128814 ATTGAAAAGAACTGGGAA------ATACCATATCAGC-CTTCAATCATTTGAGCAAAACGTTCAAGATCGTAAGTAGGAGA---TCTTGAATCATCCCGATA i saiBol1.JH378168 I 6 C 0 s cebCap1.NW_016107322v1 7010244 95 - 14377064 ATTGAAAAGAACTGGGAA------ATACCATATCAAC-CTTCAATCATTTGAACAAAATGTTCAAGATAGTAAGTAGGAGATCTTCTTGAATCATCCCGATA i cebCap1.NW_016107322v1 I 12 C 0 s aotNan1.NW_018487195v1 6058593 95 + 9889416 ATTGAAAAGAACTGGGAA------ATACCATATTAAC-CTTCAATCATTTGAAGAAAATGTTCAAGATAGTAAGTAGGAGATCTTCTTGAATCATCCCGATA i aotNan1.NW_018487195v1 I 17 C 0 s otoGar3.GL873528 18313748 102 - 38779656 ATTAAAAAGAATTAGGAAGTAGTTATAGTATAGTAACAAATCATTCATGTAGATTAAATGCTCAAGATGGTGAGTAGGAGTTCTCCCTGAATCATCCACATA i otoGar3.GL873528 I 14 C 0 s canFam3.chr31 11428384 102 + 39895921 ATTGAAAAGAACTAGGAAATTGTTATAGAATATTAACAAATCAATCATGTAGAATAAATGCTCAAGATGATAAGTAGAAGGTCTCTCAGAATCATCCAGATA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623640 102 - 6883506 ATCAAAAAGAACTAGAAAATGGTTATAGTATATTAACACATCAATCATTTGGACTAAATGCCCAAGATGATAAGTAAGAGGTCTCCCGGAATCATCCAGATA i dasNov3.JH568778 I 9 C 0 e proCoq1.NW_012147997v1 1164608 117 - 2312742 I e micMur3.chr31 16823433 161 + 47401472 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=854891.000000 s hg38.chr21_GL383578v2_alt 15771 67 + 63917 ACTTCTTCAGGATTCCACTTCTTGTTATGATGACTGGGCATCTCACATTG-----------------CATCTGTTTTGAGATTG s panTro5.chr21 852481 67 + 33445071 ACTTCTTCAGGATTCCACTTCTTGTTATGATGACTGGGCATCTCACATTG-----------------CATCTGTTTTGAGATTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537859 67 + 46275980 ACTTCTTCAGGATTCCACTTCTTGTTATGATGACTGGGCATCTCACATTG-----------------CATCTGTTTTGAGATTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449924 67 - 13858734 ACTTCTTCAGGATTCCACTTCTTGTTATGATGACTGGGCATCTCACATTG-----------------CATCTGTTTTGAGATTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577259 67 + 32716333 ACCTCTTCAGGATTCCACTTCTTGTTATGATGACCGGGCATCTCACATTG-----------------CATCTGTTTTGAGATTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646038 67 - 185818997 ACCTCTTCAGGATTCCACTCCTTGTTATGATGACGGGGCATTTCACATCG-----------------CATCTGCTTTGAGATTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454432 67 - 192294377 ACCTCTTCAGGATTCCACTCCTTGTTATGATGACGGGGCATTTCACATCG-----------------CATCTGCTTTGAGATTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899083 67 + 9440265 ACCTCTTCAGGATTCCACTCCTTGTTATGATGACGGGGCATTTCACATCG-----------------CATCTGCTTTGAGATTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5638896 67 + 21915920 ACCTCTTCAGGATTCCACTCCTTGTTATGATGACGGGGCATTTCACATCG-----------------CATCTGCTTTGAGATTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283337 67 - 90373283 ACCTCTTCAGGATTCCACTCCTTGTTATGATGACGGGGCATTTCACATCG-----------------CATCTGTTTTGAGATTG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 589893 67 - 3237654 ACCTCTTCAGGACTCCACTCCTTGTTATGATGACGGGGCATTTCACATTG-----------------CATCTGTTTTGAGATTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122550 67 + 50472720 ATCTCTTTAGGATTCCACTTCTTGTTATGATGACTGAGCATCTCACATTT-----------------CATCTGTTTTGAGATTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475457 67 + 13128814 AGCTCTTTAGAATTCCACGTCTTGTTATGATGACTGAGTGTCTCACATTT-----------------CATCTGTTTTGAGATTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010339 67 - 14377064 ATCTCTTTAGGATTCCACTTCTTGTTATGATGACTGAGCATCTCACATTT-----------------CAACTGTTTTGAGATTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6058688 67 + 9889416 ATCTCTTTAGGATTCCACTTCTTGTTATGATGACTGAGCATCTCACATTT-----------------CATCTGTTTTGAGATTA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16823594 67 + 47401472 ATTTCTACAAGATTCCACTTCTTGTTATGATGACTTGGCCTCTCACATCA-----------------CATCTATTTTGACACTC i micMur3.chr31 I 161 I 12 s proCoq1.NW_012147997v1 1164725 67 - 2312742 ATTTCTGCAAGATTCCACTTCTTGTTATGATGACCTGGCCTCTCACATTG-----------------CATCTATCTTGACACTC i proCoq1.NW_012147997v1 I 117 I 12 s otoGar3.GL873528 18313850 83 - 38779656 ATCTCTGTTAGACTCCACTTGTTTTTATAATGACTTGGGCTTTTACTTTGCCAAGTCATTATGAAGTCATCT-CTTTGACACTA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428486 65 + 39895921 -ATTTTGTAAGATTCCACTTCTTGTTATGATGACTTGGCCTCTTACATTA-----------------TATCTA-GTTGAGACTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623742 67 - 6883506 ATCTCTTCAAGATTACATTTCTTGTTATGATGACTTTGCCTCTAATATTA-----------------CATCTCTTTGGAGACTA i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=125334.000000 s hg38.chr21_GL383578v2_alt 15838 10 + 63917 TCACCAAACT s panTro5.chr21 852548 10 + 33445071 TCACCAAACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537926 10 + 46275980 TCACCAAACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 449991 10 - 13858734 TCACCAAACC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577326 10 + 32716333 TCACCAAACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646105 10 - 185818997 TCACCAAACT i rheMac8.chr3 C 0 I 4 s macFas5.chr3 159454499 10 - 192294377 TCACCAAACT i macFas5.chr3 C 0 I 4 s macNem1.NW_012019910v1 5899150 10 + 9440265 TCACCAAACT i macNem1.NW_012019910v1 C 0 I 4 s cerAty1.NW_012002954v1 5638963 10 + 21915920 TCACCAAACT i cerAty1.NW_012002954v1 C 0 I 4 s chlSab2.chr2 12283404 10 - 90373283 TCACCAAACT i chlSab2.chr2 C 0 I 4 s colAng1.NW_012116933v1 589960 10 - 3237654 TCACCAAACT i colAng1.NW_012116933v1 C 0 I 4 s calJac3.chr21 19122617 10 + 50472720 TCATGAAACT i calJac3.chr21 C 0 I 4 s saiBol1.JH378168 2475524 10 + 13128814 TCACCAAACT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010406 10 - 14377064 TCACCAAACT i cebCap1.NW_016107322v1 C 0 I 4 s aotNan1.NW_018487195v1 6058755 10 + 9889416 TTACCAAACT i aotNan1.NW_018487195v1 C 0 I 4 s otoGar3.GL873528 18313933 10 - 38779656 TCAACAAACT i otoGar3.GL873528 C 0 I 4 s canFam3.chr31 11428551 10 + 39895921 TCACCAAACT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623809 10 - 6883506 TGATCAAACT i dasNov3.JH568778 C 0 I 2 e proCoq1.NW_012147997v1 1164792 12 - 2312742 I e micMur3.chr31 16823661 12 + 47401472 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=507106.000000 s hg38.chr21_GL383578v2_alt 15848 37 + 63917 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA s panTro5.chr21 852558 37 + 33445071 AAAT---AGGCATGAGAACCACTATAGTAGA-GGCAAGCAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537936 37 + 46275980 AAAT---AGGCATGAGAACGACTATAGTACA-GGCAAGCAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450001 37 - 13858734 AAAT---AGGCTTGAGAACGACTATAGTAGA-GGGAAGCAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577336 37 + 32716333 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646119 37 - 185818997 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i rheMac8.chr3 I 4 C 0 s macFas5.chr3 159454513 37 - 192294377 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i macFas5.chr3 I 4 C 0 s macNem1.NW_012019910v1 5899164 37 + 9440265 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i macNem1.NW_012019910v1 I 4 C 0 s cerAty1.NW_012002954v1 5638977 37 + 21915920 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i cerAty1.NW_012002954v1 I 4 C 0 s chlSab2.chr2 12283418 37 - 90373283 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i chlSab2.chr2 I 4 C 0 s colAng1.NW_012116933v1 589974 37 - 3237654 AAAT---AGGCATGAGAATGACTATAGTAGA-GGGAAGCAA i colAng1.NW_012116933v1 I 4 C 0 s calJac3.chr21 19122631 37 + 50472720 AAAT---AGGCATGAGAAAAACTATAGTAGA-GGGAAGCAA i calJac3.chr21 I 4 C 0 s saiBol1.JH378168 2475534 37 + 13128814 AAAT---AGGCGTGAGAACAACTATAGCAGA-GTGAAGCAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7010420 37 - 14377064 AAAC---AGACATGAGAACAACTATAGCAGA-GGGAAGCAA i cebCap1.NW_016107322v1 I 4 I 594 s aotNan1.NW_018487195v1 6058769 37 + 9889416 AAAT---AGGCATGAGAACGACTATAGTAGA-GGGAAGCAA i aotNan1.NW_018487195v1 I 4 C 0 s micMur3.chr31 16823673 37 + 47401472 AAAC---AAGTATGAGAATGATTATAGTGGA-GCAAAGCAA i micMur3.chr31 I 12 C 0 s proCoq1.NW_012147997v1 1164804 37 - 2312742 AAAC---AAGTATGAGAATGATTATAGTGGA-GCAAAGCAA i proCoq1.NW_012147997v1 I 12 C 0 s otoGar3.GL873528 18313947 38 - 38779656 AAAC---AGGTATAAAAATGATTATAGTAGAGGGAAAAAAA i otoGar3.GL873528 I 4 C 0 s canFam3.chr31 11428561 40 + 39895921 AAATAGAAGGCATGAGAATGATTATAGCAGA-GGAAAGCAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623821 37 - 6883506 AGAA---AAGAATGAAACTGATTATGGCAGA-GTGAAGCAA i dasNov3.JH568778 I 2 C 0 e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=192578.000000 s hg38.chr21_GL383578v2_alt 15885 16 + 63917 ATTCTTTGTGTTAACA s panTro5.chr21 852595 16 + 33445071 ATTCTTTGTGTTAACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537973 16 + 46275980 ATTCTTTGTGTTAACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450038 16 - 13858734 ATTCTTTGTGTTAACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577373 16 + 32716333 ATTCTTTGTGTTAACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646156 16 - 185818997 ATTCTTTGTGTTAACA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454550 16 - 192294377 ATTCTTTGTGTTAACA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899201 16 + 9440265 ATTCTTTGTGTTAACA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639014 16 + 21915920 ATTCTTTGTGTTAACA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283455 16 - 90373283 ATTCTTTGTGTTAACA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 590011 16 - 3237654 ATTCTTTGTGTTAACA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122668 13 + 50472720 ---CTTTGTGTTAATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2475571 13 + 13128814 ---CTTTGTGTTAACA i saiBol1.JH378168 C 0 C 0 s aotNan1.NW_018487195v1 6058806 13 + 9889416 ---CTTTGTGTTAACA i aotNan1.NW_018487195v1 C 0 I 317 s micMur3.chr31 16823710 16 + 47401472 ATTCTTTGTGTTAACA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1164841 16 - 2312742 ATTCTTTGTGTTAACA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18313985 16 - 38779656 ATTCATTGTTTTAATA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428601 15 + 39895921 ATTCTTTGTGTTAAA- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623858 15 - 6883506 ATTCTTTGTGTTTCA- i dasNov3.JH568778 C 0 C 0 e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=114116.000000 s hg38.chr21_GL383578v2_alt 15901 10 + 63917 GTTGTTACCT s panTro5.chr21 852611 10 + 33445071 ATTGTTACCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537989 10 + 46275980 ATTGTTACCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450054 10 - 13858734 ATTGTTACCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577389 10 + 32716333 ATTGTTACCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646172 10 - 185818997 ATTGTTACCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454566 10 - 192294377 ATTGTTACCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899217 10 + 9440265 ATTGTTACCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639030 10 + 21915920 ATTGTTACCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283471 10 - 90373283 ATTGTTACCT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 590027 10 - 3237654 ATTGTTACCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122681 10 + 50472720 ATCATTACCT i calJac3.chr21 C 0 I 274 s saiBol1.JH378168 2475584 10 + 13128814 atcattgtct i saiBol1.JH378168 C 0 I 4323 s micMur3.chr31 16823726 10 + 47401472 GTTGTCACCT i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1164857 10 - 2312742 ATTGTCACTT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18314001 10 - 38779656 ATTGTCACTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428616 10 + 39895921 ATTGTCACCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623873 10 - 6883506 ATTGTTATCT i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=320887.000000 s hg38.chr21_GL383578v2_alt 15911 49 + 63917 -GTTTTGCTAAAATCAGTAGCAGAAGGATTG---TGATGAGGTTATTTAACTG s panTro5.chr21 852621 49 + 33445071 -GTTATGCTAAAATCAGTAGCAGAAGGATTG---TGATGAGGTTATTTAACTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14537999 49 + 46275980 -GTTATGCTAAAATCAGTAGCAGAAGGATTG---TGATGAGGTTATTTAACTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450064 49 - 13858734 -GTTTTGCTAAAATCAGTAGCAGAAGGATTG---TGATGAGGTTATTTAACTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577399 49 + 32716333 -GTTTTGCTAAAATCAGTAGCAGAAGGATTA---TGATGAGGTTATTTAACTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646182 49 - 185818997 -GTTTTGCTAAAATCAGTAGCAGAAGAATTA---TGATGTGATTATTTAACTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454576 49 - 192294377 -GTTTTGCTAAAATCAGTAGCAGAAGAATTA---TGATGTGATTATTTAACTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899227 49 + 9440265 -GTTTTGCTAAAATCAGTAGCAGAAGAATTA---TGATGTGATTATTTAACTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639040 49 + 21915920 -GTTTTGCTAAAATCAGTAGCAGAAGAATTA---TGATGAGATTATTTAACTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283481 49 - 90373283 -GTTTTGCTAAAATCAGTAGCAGAAGAATTA---TGATGAGATTATTTAACTG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 590037 49 - 3237654 -GTTTTGCTAAAATTAGTAGCAGAAGAATTA---TGATGAGATTATTTAACTG i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16823736 51 + 47401472 -G-TTTGCTAAAATCAGAAGAGGAAGAATTATAGTGATGACATTATTTAACTC i micMur3.chr31 C 0 I 9 s proCoq1.NW_012147997v1 1164867 52 - 2312742 -GTTTTGCTAAAATCAAAAAAGGAAGAATTATAGTGATGAGATTATTAAACTC i proCoq1.NW_012147997v1 C 0 I 42 s otoGar3.GL873528 18314011 37 - 38779656 -GTGTCACTAAAAGCAGAAAAGGAAGA--------------ATTATTTAACT- i otoGar3.GL873528 C 0 I 10 s canFam3.chr31 11428626 50 + 39895921 --GTTTACTAAAATCAGTAGAGGTAGAATTATGGTGATGAATTTATTTAGCT- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 623883 35 - 6883506 TGTTTTCTTAAGGT----------AGAAATA---TGGTG-----ATTTAGCTG i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=144000.000000 s hg38.chr21_GL383578v2_alt 15960 26 + 63917 GACAGTG----------AATAGGTCTCATTAGGCTA s panTro5.chr21 852670 26 + 33445071 GATAGTG----------aataggtctcattaggcta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538048 26 + 46275980 GATAGTG----------aataggtctcattaggcta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450113 26 - 13858734 GATAGTG----------aataggtctcattaggcta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577448 26 + 32716333 GATAGTG----------AATAGGTCTCATTAGGCTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646231 25 - 185818997 gatagtg-----------ataggtctcattaggcta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454625 25 - 192294377 GATAGTG-----------ATAGGTCTCATTAGGCTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899276 25 + 9440265 gatagtg-----------ataggtctcattaggcta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639089 25 + 21915920 gatagtg-----------atagttctcattaggcta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283530 25 - 90373283 GATAGTG-----------ATAGGTCTCATTAGGCTG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 590086 25 - 3237654 gatagtg-----------ataggtctcattaggcta i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16823796 26 + 47401472 -Aagata---------gaataattctcattaagatc i micMur3.chr31 I 9 C 0 s otoGar3.GL873528 18314058 26 - 38779656 -ACTGTA---------CAATAAGTCTCATTAAGACA i otoGar3.GL873528 I 10 C 0 s canFam3.chr31 11428676 32 + 39895921 GATAGTATATA----AGAGTAAGTCTCATTAAGATA i canFam3.chr31 C 0 I 213 s dasNov3.JH568778 623918 35 - 6883506 -GTAGTATATAAAATAGAGTAAGTCTCATTAAAATA i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1164919 42 - 2312742 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=75334.000000 s hg38.chr21_GL383578v2_alt 15986 8 + 63917 GAATTTTG s panTro5.chr21 852696 8 + 33445071 gaattttg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538074 8 + 46275980 gaattttg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450139 8 - 13858734 gaattttg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577474 8 + 32716333 GAATTTTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646256 8 - 185818997 gaattttg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454650 8 - 192294377 GAATTTTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899301 8 + 9440265 gaattttg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639114 8 + 21915920 gaattttg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283555 8 - 90373283 GAATTTTG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 590111 8 - 3237654 gaattttg i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16823822 8 + 47401472 gaattttt i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18314084 8 - 38779656 GAATTTTG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428921 8 + 39895921 GAATTTTG i canFam3.chr31 I 213 C 0 s dasNov3.JH568778 623953 8 - 6883506 GAATTTTG i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1164919 42 - 2312742 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=1459482.000000 s hg38.chr21_GL383578v2_alt 15994 189 + 63917 TAAGGGGTTCTGCTTACTTGGTTT-TACTTCCTTTGGCCAATAGATTAGTGATTCTAATAGCCAGCAATGGTCTACCTGATCTGGGTAGCTACCTAGAA------ATATGATTGCAGAGATTCTTTAACTTAAGATTTTACAATATTATACAAATATATTTCTGTGAATAACTGAGTCCACATTTTCTATAT--ACAG-- s panTro5.chr21 852704 189 + 33445071 taaggggttctgcttacttggttt-tacttcctttggccaatagattagtgattctaatagccagcaatggtctacctgatctgggtagctacctagaa------atatgattgcagagattctttaacttaagattttacaatattatacaaatatatttctgtgaataactgagcccacattttctatat--acag-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538082 189 + 46275980 taaggggttctgcttacttggttt-tacttcctttggccaatagattagtgattctaatagccagcaatggtctacctgatctgggtagctacctagaa------atatgattgcagagattctttaacttaagattttacaatattatacaaatatatttctgtgaataactgagcccacattttctatat--acag-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450147 189 - 13858734 taaggggttctgcttacttggttt-tacttcctttggccaatagattagtgattctaatagctagcaatggtctacctgatctgggtagctacctagaa------atatgattgcagagattctttaacttaagattttacaatattatacacatatatttatgtgaataactgagtccacattttctatat--acag-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577482 189 + 32716333 TAAGGGGGTCTGCTTACTTGGTTT-TACTTCCTTTGGCCAATAGATTAGTGATTCTAATAGCCAGCAATGGTCTACCTGATCTGAGTAGCTACCTAGAA------ATATGATTGCAGAGATTCTTTTACTTAAGATTTTACAATATTATACAAATATATTTCTGTGAATAACCGAGCCCACACTTTGTATAC--ACAG-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646264 185 - 185818997 taaggggttctg----cttcgttt-tacttcttttggccaatagactggtgattctaatagccaacaatggtctacctgatctggctagctacctagaa------atatgattgcagagattctttaacttaagattttacaatattatacaaatatatttctgtaaataactgagcccacactttctataa--gcag-- i rheMac8.chr3 C 0 I 1 s macFas5.chr3 159454658 185 - 192294377 TAAGGGGTTCTG----CTTCGTTT-TACTTCTTTTGGCCAATAGACTGGTGATTCTAATAGCCAACAATGGTCTACCTGATCTGGCTAGCTACCTAGAA------ATATGATTGCAGAGATTCTTTAACTTAAGATTTTACAATATTATACAAATATATTTCTGTAAATAACTGAGCCCACACTTTCTATAA--GCAG-- i macFas5.chr3 C 0 I 1 s macNem1.NW_012019910v1 5899309 185 + 9440265 taaggggttctg----cttcgttt-tacttcttttggccaatagactggtgattctaatagccaacaatggtctacctgatctggctagctacctagaa------atatgattgcagagattctttaacttaagattttacaatattatacaaatatatttctgtaaataactgagcccacactttctaTAA--GCAG-- i macNem1.NW_012019910v1 C 0 I 1 s cerAty1.NW_012002954v1 5639122 185 + 21915920 taaggggttctg----cttcgttt-tacttcttttggccaatagactggtgattctaatagccaacaatggtctacctgatctggctagttacctagaa------atatgattgtagagattctttaacttaagattttacaatattatacagatatatttctgtaaataactgagcccacactttctaTAA--GCAG-- i cerAty1.NW_012002954v1 C 0 I 1 s chlSab2.chr2 12283563 185 - 90373283 TAAGGGGTTCTG----CTTGGTTT-TACTTCTTTTGGCCAATAGACTGGTGATTCTAATAGCCAACAATGATCTACCTGATCTGGCTAGCTACCTAGAA------ATATGATTGCAGAGATTCTTTAACTTAAGATTTTACAATATTATACAAATATATTTCTGTGAATAACTGAGCCCACACTTTCTATAC--GCAG-- i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 590119 185 - 3237654 taaggggttctg----cttggttt-tacttcttttggccaatagactggtgattctaatagccaacaatggtctacctgatctggctagctacctagaa------atatgattgcagagattctttaacttaagattttacaatattatacaaatacatttctgtgaataactgagcccacactttctatac--gcag-- i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16823830 189 + 47401472 aaagaggttctgcttatttggttt-tactatctttggccaatagactagtgattctaataaccagaacaggagtacctgatctaggtagctacctagaa------agaaaattgcaaggattctttcacttaagattttacaaaataataaaaatatatttttgtgaccaactaagctcatagtttctatat--acat-- i micMur3.chr31 C 0 I 2 s proCoq1.NW_012147997v1 1164961 189 - 2312742 taaggggttctgcttatttagttt-tactatctttggccaatagactagtgattctaatagccagaaaaggaccacctgatctgggtggctacctagaa------agataattgcagggattctttcacttaagattttacaaaataataagaatacatttctgtgaccaactaagcccatactttataTAC--ACAT-- i proCoq1.NW_012147997v1 I 42 I 2 s otoGar3.GL873528 18314092 183 - 38779656 TAAGGGATTCTGCTTATTTGGTTT------TCTTTGGCTAATAGACTAGTGATTATAATAGCCAGAAAAGAATCACCTGATCTGGGTAGTTGCTTAGAATGATATTGATAATTGCAGAGATTCGTTCACTTATGACTTTACAGAATAACAAAAACATTTTTCTGT----AACTGAGTCCATACTTGCTATAC--A----- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11428929 179 + 39895921 TAAGGCATTCTGCTTCCTTGGTTTTTGCTTTCTTTGGACAATAGAATAGTGATTTTCAGAGCTAGCAAAAGTCTATCTGATCTGGGTAGCTATCtaaaa------aaataattatagatattctttaaa----------atattataataaaaatatttttCT---AACAACTGAGCCCACACTTTCTATACTTACAG-- i canFam3.chr31 C 0 I 2 s dasNov3.JH568778 623961 175 - 6883506 TAAGCTTTTTTTCTG-CTTGCTTT-TGCTTCCTTTGTGTAACAGAATAGT-----------CCTAGAAAGATCTACCTGATCCTGGTAACTACACAGAA------AAATGATTGCAGAGA-GCTTTAACTTCAGATTTTGaaaaataataaaaatattttttCATGAATAACTGAGCCCATACT---TATAG--CCATAG i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e manLeu1.NW_012107264v1 610510 1412 + 1337817 I a score=844708.000000 s hg38.chr21_GL383578v2_alt 16183 98 + 63917 TTTTTTATTACATGCAAAAATTTTAAATCACTCATAATCTCAGCATTTTTAACCA-CTAAAA------------AAT--TAGTTTACCTACTTTCATTCTCCTTCAACTCCAC s panTro5.chr21 852893 98 + 33445071 ttttttattacatgcaacaaTTTTAAATCACTCATAGTCTCAGCATTTTTAACCA-CTAAAA------------AAT--TAGTTTACCTACTTTCATTCTCCTTCAACTCCAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538271 98 + 46275980 ttttttattacatgcaacaaTTTTAAATCACTCATAGTCTCAGCATTTTTAACCA-CTAAAA------------AAT--TAGTTTACCTACTTTCATTCTCCTTCAACTCCAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450336 97 - 13858734 -attttattacatGCAAAAATTTTAAATCACTCATAATCTCAGCATCTTTAACCA-CTAAAA------------AAT--TAGTTTACCTACTTTCATTCTCCTTCAACTCCAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577671 98 + 32716333 TTTTTTATTATATGCAAAAATTTTAAATCACTCATAATCTCAGCATTTTTAACTA-CTAAAA------------AAT--TAGTTTACCTACTTTCATTCTCCTTCAACTCCAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646450 97 - 185818997 ttttttattacatacaaAAGTTTTAAATCACTCGTAATCTCAGCAT-TTTAATTA-CTAAAA------------AAT--TATTTTACCTACTTTCATTCTCCTTCAACTCCAC i rheMac8.chr3 I 1 C 0 s macFas5.chr3 159454844 97 - 192294377 TTTTTTATTACATGCAAAAGTTTTAAATCACTCGTAATCTCAGCAT-TTTAATTA-CTAAAA------------AAT--TATTTTACTTACTTTCATTCTCCTTCAACTCCAC i macFas5.chr3 I 1 C 0 s macNem1.NW_012019910v1 5899495 97 + 9440265 TTTTTTAATACATGCAAAAGTTTTAAATCACTCGTAATCTCAGCAT-TTTAATTA-CTAAAA------------AAT--TATTTTACCTACTTTCATTCTCCTTCAACTCCAC i macNem1.NW_012019910v1 I 1 C 0 s cerAty1.NW_012002954v1 5639308 97 + 21915920 TTTTTTATTACATGCAAAAGTTTTAAATCACTCGTAATCTCAGCAT-TTTAATTA-CTAAAA------------AAT--TATTTTACCTACTTTCATTCTCCTTCAACTCCAC i cerAty1.NW_012002954v1 I 1 C 0 s chlSab2.chr2 12283748 97 - 90373283 TTTTTTATTACATGCAAAAGTTTTAAATCACTCGTAATCTCAGCTT-TTTAACTA-CTAAAA------------AAT--TATTTTACCTACTTTCATTCTCCTTCAACTCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 611922 97 + 1337817 TTTTTTATTACATGCAAAAGTTTTAAATCACTCGTAATCTCAGCAT-TTTAATTA-CTAAAA------------AAT--TATTTTACCTACTTTCATTCTCCTTCAACTCCAC i manLeu1.NW_012107264v1 I 1412 C 0 s colAng1.NW_012116933v1 590304 97 - 3237654 ttttttattacatGCAAAAGTTTTAAATCACTCATAATCTCAGCAT-TTTAACTA-CTAAAA------------AAA--TATTTTACCTACTTTCATTCTCCTTCAACTCCAC i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16824021 98 + 47401472 ttttttattacacacaaAATTTCTAAATCACTCATAATCTCTACATTTTTAACCA-CTAAAA------------ATA--TTCTTTACCTATTCTCATCCCTCTTTAACTTCAT i micMur3.chr31 I 2 C 0 s proCoq1.NW_012147997v1 1165152 98 - 2312742 TTTTTTATTACACACAAAATTTTTAAATCACTCATAATCTCTACATTTTTAACCA-CTAAAA------------ATA--TTCTTTACCTATTCTCATCCCTCTTTAATTTCAC i proCoq1.NW_012147997v1 I 2 C 0 s otoGar3.GL873528 18314275 98 - 38779656 TTTTTTGTTCCACACAAAACTTTAAAATC-CTAATAATCTCAGCATTTTTAACCA-CGAAAA------------AAAATTTCTTTA-CTACTCTCATCCCTCTTCCACTTCAC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429110 89 + 39895921 TTTTTTACAACA--CAAAATTTTTAAATCA--------CTCAGCACTTATAATTATTTAAAA------------AAT--TCCTTTACCTTCTTCCATCACCCTTCAACTCTAC i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 624136 109 - 6883506 CTTTCTGCTACACACAAAATTTAAAAATTATGCATAATCCAAGAAT-TTTAATCA-TTAAAATGAAAATAATATAGT--TCCTGTACCTATTCCTATCCCTGTTTAATTCTGC i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I a score=379951.000000 s hg38.chr21_GL383578v2_alt 16281 43 + 63917 ATCACTGTAATCACTGTAAATTATTTTATGAGTATATATTTCC s panTro5.chr21 852991 43 + 33445071 ATCACTGTAATCACTGTAAATTATTTTATGAGTATATATTTCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538369 43 + 46275980 ATCACTGTAATCACTGTAAATTATTTTATGAGTATATATTTCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450433 43 - 13858734 ATCACTGTAATCACTGTAAATTATTTTATAAGTATATATTTCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577769 43 + 32716333 ATCACTGTAATCACTGTAAATTATTTTATGAATATATATTTCC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646547 43 - 185818997 ATCACTGTAATCACTGTAAATTATTTTATGAGTACATATTTCC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454941 43 - 192294377 ATCACTGTAATCACTGTAAATTATTTTATGAGTACATATTTCC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899592 43 + 9440265 ATCACTGTAATCACTGTAAATTATTTTATGAGTACATATTTCC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639405 43 + 21915920 ATCACTGTAATCACTGTAAATTATTTTATGAGTACATATTTCC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283845 43 - 90373283 ATCACTGTAATCACTGTAAATCATTGTATGAGTACACATTTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 612019 43 + 1337817 ATCACTGTAATCACTGTAAATTATTTTATGAGTACATATTTCC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 590401 43 - 3237654 ATCACTGTAACCACTGTAAATTATTTTATGAGTACATATTTCC i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16824119 42 + 47401472 TTCACTGTAGTCACTATAAATTGTTTTGTGATTATA-ACTTCC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1165250 43 - 2312742 TTCACTGTAGTTACTGTAAGTTGTTTTGTGATTATATCCTTCC i proCoq1.NW_012147997v1 C 0 C 0 s canFam3.chr31 11429199 43 + 39895921 TTCACTGTAATCACTGTAAATTATTTTGTGACCATATCCTTTC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624245 43 - 6883506 TGCACTAAAACCACTGTAAATAGTTTTGTGattatatccttcc i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C a score=17059.000000 s hg38.chr21_GL383578v2_alt 16324 2 + 63917 TG s panTro5.chr21 853034 2 + 33445071 TG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538412 2 + 46275980 TG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450476 2 - 13858734 TG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577812 2 + 32716333 TG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646590 2 - 185818997 TG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454984 2 - 192294377 TG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899635 2 + 9440265 TG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639448 2 + 21915920 TG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283888 2 - 90373283 TG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 612062 2 + 1337817 TG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 590444 2 - 3237654 TG i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16824161 2 + 47401472 TG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1165293 2 - 2312742 TG i proCoq1.NW_012147997v1 C 0 C 0 s canFam3.chr31 11429242 2 + 39895921 AG i canFam3.chr31 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C a score=1012309.000000 s hg38.chr21_GL383578v2_alt 16326 146 + 63917 GGTTTT-AATTTTAttttgtttta-aattgacaggtaataattgtacatattaatggggtacagagtgatgttttgatacatgtatacattatgtaatgagcaaaccaggataattagcatatccatcaccttgaacacttgtcattt s panTro5.chr21 853036 146 + 33445071 GGTTTT-AATTTTAttttgtttta-aattgacaggtaataattgtacatattaatggggtacagagtgatgttttgatacatgtatacattatgtaatgagcaaaccaggataattagcatatccatcaccttgaacacttgtcattt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538414 146 + 46275980 GGTTTT-AATTTTAttttgtttta-aattgacaggtaataattgtacatattaatggggtacagagtgatgttttgatacatgtatacattatgtaatgagcaaaccaggataattagcatatccatcaccttgaacacttgtcattt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450478 146 - 13858734 GGTTTT-AATTTTAttttgtttta-aattgacaggtaataattgtacacattaatggggtacagagtgatgttttgatacatgtatacattatgtaatgatcaaaccaggataattagcatatccatcaccttgaacacttgtcattt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577814 146 + 32716333 GGTTTT-AATTTTAttttgtttta-aattgacaggtaataattgtacatattaatggggtacagagtgatgttttgatacatgtatacattgtgtaatgatcaaactaggataattagcatatccatcaccttgaacacttgtcattt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152646592 146 - 185818997 GGTTTTAAATTTTAttttgtttta-aatcgacagatattaattttacatattaatggggtacagaataatgttttgatacctgtatacattgtgtaatgatcaaaccaggataattagcatatccat-accttaaacacttgtcattt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159454986 146 - 192294377 GGTTTTAAATTTTAttttgtttta-aattgacagatattaattttacatattaatggggtacagaataatgttttgatacctgtatacattgtgtaatgatcaaaccaggataattagcatatccat-accttgaacacttgtcattt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899637 146 + 9440265 GGTTTTAAATTTTAttttgtttta-aattgacagatattaattttacatattaatggggtacagaataatgttttgatacctgtatacattgtgtaatgatcaaaccaggataattagcatatccat-accttcaacacttgtcattt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639450 147 + 21915920 GGTTTTTAATTTTAttttgtttta-aattgacaggtattaattttacattttaatggggtacagagtgatgttttgatacatgtatacattgtgtaatgatcaaaccaggataattagcatatccatcaccttgaacacttgtcattt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12283890 147 - 90373283 AGTTTTTAATTTTAttttgtttta-aattgacaggtattaattttacatattaatggggtacagagtgatgttttgatacatgtatacattgtgtaatgatcaaaccaggatatttagcatatccatcaccttgaacacttgccattt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 612064 147 + 1337817 GGTTTTTAATTTTAttttgtttta-aattgacaggtattaattttacatattaatggggtacagagtgatgttttgatacatgtatacattgtgtaatgatcaaaccaggataattagcatatccatcaccttgaacacttgtcattt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 590446 147 - 3237654 GGTTTTTAATTTTAttttgtttta-aattgacaggtattaattttacatattaatggggtacagagtgatgttttgatacatgtatacattgtgtaatgatcaaaccaggataattaacatatccatcaccttgaacacttgtcattt i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16824163 141 + 47401472 ATTTTT---TTTCAttttgtcttt-agttgatacataatgagtatacatatttatggggtacagtgcaatgttttgatacatgcatacattatataatg---aaatcagggtaattagcatatacatcacctcaaacatttgccattt i micMur3.chr31 C 0 I 4944 s proCoq1.NW_012147997v1 1165295 145 - 2312742 ATTTTTTTGTTTCAttttgtctttaagttgatacataatgagtatacatatttatggggtgcagtgcaatgttttgatacatgcgtacattgtgtaatg---aaatcagggtaattagcatatacatcacctcaaacacttgctattt i proCoq1.NW_012147997v1 C 0 C 0 e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C a score=2309519.000000 s hg38.chr21_GL383578v2_alt 16472 355 + 63917 ctttgtggtaagaatattcaaaattccctcttctaactattttgaaatatacggtacattattttttaactatagtcatcctactgtgcaatagaacaccagaacttactccttctatctaactgtaactttgtgcgtgttgaccaacctctccccattcttccctctcccctgttctccccagcctctggtaaccaccattctacactttacttctataagatcagctttttaaaattccacatataagttagatcatgtggtatttgtacctctgtgcttggaaacttttatttaacataacgttctctaggtt-aactatgttgttgcaaatgacaggatttcattatttttt s panTro5.chr21 853182 355 + 33445071 ctttgtggtaagaatattcaaaattccctcttctaactattttgaaatatacggtacattattttttaactatagtcatcctactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtgcgtgttgaccaacctctccccattcttccctctcccctgttctccccagcctctggtaaccaccattctacactttacttctataagatcagctttttaaaattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttatttaacataactttctctaggtt-aaccatgttgttgcaaatgacaggatttcattatttttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538560 355 + 46275980 ctttgtggtaagaatattcaaaattccctcttctaactattttgaaatatacggtacattattttttaactatagtcatcctactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtgcgtgttgaccaacctctccccattcttccctctcccctgttctccccagcctctggtaaccaccattctacactttacttctataagatcagctttttaaaattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttatttaacataactttctctaggtt-aaccatgttgttgcaaatgacaggatttcattatttttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450624 354 - 13858734 ctttgtggtaagaatattcaaaattccctcttctaactattttgaaatatac-gtacattattttttaactatagtcatcctactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtgcgtgttgaccaacctctccccattcttccctctcccctgttctccccagcctctggtaaccaccattctacactttacttctataagatcagctttttaaaattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttatttaacataacgttctctaggtt-aaccatgttattgcaaatgacaggatttcattatttttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1577960 353 + 32716333 ctttgtggtaagaatattcaaaattccctcttctagctattttgaaatatacagtacat--ttttttaactatagtcatcctactgtgcaatagaacaccagaacttattctttctatctaactgtaactttgtgcatgttgaccaacatctccccattcttccctcttccctgttctcctctgcctctggtaaccaccattctacactctacttctataaaatcagctttctaagattccacatatgagttagatcatgtggtatttgtccgtctgtgcttggaaacttttatttaacataacgttctctaggtt-aaccaagttgttgcaaatgacaggatttcattctttttt i nomLeu3.chr25 C 0 I 7745 s rheMac8.chr3 152646738 355 - 185818997 atttgtggtaagaatattcaaaattccctcttctagctattttgtaatatacagtacattattttttaactatagtcatcccactgtgcaatagaacaccagaacttattccttttatctaactgtaactttgtacctgttgaccaacctctccccatttttccctctcccctgttctccccagcctctggtaaccaccattctacactctacttctataagatcagcttttttagattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttattcaacataatgttctctaggtt-aaccatgctgttgcaaatgacaggatttcattctttttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159455132 355 - 192294377 atttgtggtaagaatattcaaaattccctcttctagctattttgtaatatacagtacattattttttaactatagtcatcccactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtacctgttgaccaacctctccccatttttccctctcccctgttctccccagcctctggtaaccaccattctacactctacttctataagatcagcttttttagattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttattcaacataatgttctctaggtt-aaccatgctgttgcaaatgacaggatttcattctttttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5899783 355 + 9440265 atttgtggtaagaatattcaaaattccctcttctagctattttgtaatatacagtacattattttttaactatagtcatcccactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtacctgttgaccaacctctccccatttttccctctcccctgttctccccagcctctggtaaccaccattctacactctacttctataagatcagcttttttagattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttattcaacataatgttctctaggtt-aaccatgctgttgcaaatgacaggatttcattctttttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639597 355 + 21915920 atttgtggtaagaatattcaaaattccctcttctagctattttgtaatatacagtacattattttttaactatagtcatcccactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtacctgttgaccaacctctccccatttttccctctcccctgttctccccagcctctggtaaccaccattctacactctacttctataagatcagcgtttttagattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttattcaacataatgttctgcaggtt-aaccatgctgttgcaaatgacaggatttcattctttttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12284037 355 - 90373283 atttgtggtaagaatattcaaaattccctcttctagctattttgaaatatacagtacattattttttaactatagtcatcccactgtgtaatagaacaccagaacttattccttctatctaactgtaactttgtacttgttgaccaacctctccccatttttccctctcccctgttctccctagcctctggtaaccaccattctacactctacttctataagatcagcttttttagattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaatttttattcaacataatgttctctagggt-aaccatgctgttgcaaatgacaggatttcattctttttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 612211 355 + 1337817 atttgtggtaagaatattcaaaatttcctcttctagctattttgtaatatacagtacattattttttaactatagtcatcccactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtacctgttgaccaacctctccccatttttccctctcccctgttctccccagcctctggtaaccaccattctacactctacttctataagatcagcttttttagattccacatatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttattcaacataatgttctctaggtt-aaccatgctgttgcaaatgacaggatttcattctttttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 590593 355 - 3237654 atttgtggtaagaatattcaaaattccctcttctagctattttgaaatatacagtacattattttttaactatagtcatcctactgtgcaatagaacaccagaacttattccttctatctaactgtaactttgtacctgttgaccaatctctccccatttttccctctccccggttctccccagcctctggtaaccaccattctacactctacttctataagatcagctattttagattccacgtatgagttagatcatgtggtatttgtccctctgtgcttggaaacttttattcaatataatgttcgctaggtt-aaccatgctgttgcaaatgacaggatttcattctttttt i colAng1.NW_012116933v1 C 0 C 0 s proCoq1.NW_012147997v1 1165440 350 - 2312742 atttgtggtgagaacattcaaaat---ctcgcctagctattttgaaatatacattatttta-tttttaactatagtcaccctactatacaagagaacatggaaacttattcctcctatctaactgtaactttatccccatcaaacaatctct-cccattcttccctcacctgtactctccctagtctctggtaaccactattctactctttacttctataagatcaacatttttagattccacaggtgagtgagatcatgcagtatttgtccttctgtgcttggtttatttcacttatcataatgtcctctaggttcagccatgttgttgcaaatggcagaatttcggtcttttt- i proCoq1.NW_012147997v1 C 0 C 0 e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C a score=5214421.000000 s hg38.chr21_GL383578v2_alt 16827 995 + 63917 atggctggatagtattccattgtgtacatacacc-ca---ttttttaatccattcatccattaatgaacacttaggttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacatattgatttcatttcctttggttatatacccaaaataggggttgctgggtcttagtgtagttctgttgttaattttttaagaaaactccatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctacatcctcaccaacatttgtta----ttttttttatctttttgatagtcactattctaactggggtatggtgac-atctcattgaggttctgatttgcattttcctgatgattagtgatattgagcatattttcatacacctgttgtcatttgtatgtcttcttttgagaaatctctcttcagatcttttgcccattttcaaagtgaatttatttatttccttttctgttgagttgtttgagtttcatatatattctggatcttaaccgcttgtcaaatgcatagtttgtgactattttctttcattctgtaggctatctcgtcaactctgtttattgagg-ttttgctgtgtagaagcctttcagtttgatgtaatcccatgtgtgcctatttttac-tttgttttctgtgcttttgaggtcttactccaaaaattccttgcccaagccaatgtcat-aagcatttatccaattttttcctctagtagttttatagtttcggatcttacatttaagtctttagtccactctgagttgacttttgttaagtggtgagaggtaggagtctagtttcattcttctgcatgtttagattcag--tttcccagcaccatttattgaagaaactgttctttccccagtgtgtgttcttggcacctttattgaaattcagttggct-taaatgtgtgaa--tttttttctggat s panTro5.chr21 853537 992 + 33445071 atggctggatagtattccattgtgtacatacacc-ca---ttttttaatccattcatccattgatgaacacttaagttgttcctatattttgcctattgtgaataatgctgcaataaacatgggagtgcagatatctcttcaatatattgatttcatttcctttggttatatacccaaaataggggttgctgggtcttagtgtagttctgttgttaattttttaagaaaactccatgttgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatgtcctcaccaacatttgtta-----tttttttatctttttgatagtcactattctaactggggtatggtgac-atctcattgaggttctgatttgcattttcctgatgattagtgatatggagcatattttcatatacctgttgtcatttgtatgtcttcttttgagaaatgtctcttcagatcttttgcccattttcaaagtgaatttatttatttctttttctgttg-gttgtttgagtttcatatatattctggatcttaactgcttgtcaaatgcatagtttgtgactattttctttcattctgtaggctatctcatcaactctgtttattgagg-ttttgctgtgtagaagcctttcagtttgatgtaatcccatgtgtgcctatttttac-tttgttttctgtgcttttgaggtcttactccaaaaattccttgcccaagccaatgtcat-aagcatttatccaattttttcctctagtagttttatagttttggatcttacatttaagtctttagtccactctgaattgacttttg-taagtggtgagaggtaggagtctagtttcattcttcggcatgtttagattcag--tttcccagcaccatttattgaagaaactgttttttccccagtgtgtgttcttggcacctttattgaaattcagttggct-taaatgtgtgaa--tttttttctggat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14538915 992 + 46275980 atggctggatagtattccattgtgtacatacacc-ca---ttttttaatccattcatccattgatgaacacttaggttgttcctatattttgcctattgtgaataatgctgcaataaacatgggagtgcagatatctcttcaatatattgatttcatttcctttggttatatacccaaaataggggttgctgggtcttagtgtagttctgttgttaattttttaagaaaactccatgttgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatgtcctcaccaacatttgtta-----tttttttatctttttgatagtcactattctaactggggtatggtgac-atctcattgaggttctgatttgcattttcctgatgattagtgatatggagcatattttcatatacctgttgtcatttgtatgtcttcttttgagaaatgtctcttcagatcttttgcccattttcaaagtgaatttatttatttctttttctgttg-gttgtttgagtttcatatatattctggatcttaactgcttgtcaaatgcatagtttgtgactattttctttcattctgtaggctatctcatcaactctgtttattgagg-ttttgctgtgtagaagcctttcagtttgatgtaatcccatgtgtgcctatttttac-tttgttttctgtgcttttgaggtcttactccaaaaattccttgcccaagccaatgtcat-aagcatttatccaattttttcctctagtagttttatagttttggatcttacatttaagtctttagtccactctgaattgacttttg-taagtggtgagaggtaggagtctagtttcattcttcggcatgtttagattcag--tttcccagcaccatttattgaagaaactgttttttccccagtgtgtgttcttggcacctttattgaaattcagttgact-taaatgtgtgaa--tttttttctggat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 450978 993 - 13858734 atggctgaatagtattccattgtgtacatacacc-ca---ttttttaatccattcatccattgatgaacacttaggttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagacagctcttcaacatattgatttcatttcctttggttatatacccaaaataggggttgctgggtcttagtgtagttctgttgttaattttttaagaaaactccatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatatcctcaccaacatttgtta----ttttttttatctttttgatagtcactattctaactggggtatggtgac-atctcattgaggttctgatttgcattttcctgatgattagtgatattgagcgtattttcatatacctgttgtcatttgtatgtcttcttttgagaaatgtctcttcagatcttttgcccattttcaaagtgaatttatttatttctttttctgttgagttgtttgagtttcatatatattctggatcttaaccgcttgtcaaatgcatagtttgtgactattttctttcattctgtaggctatctcgtcaactctgtttattgagg-ttttgctgtgtagaagcctttcagtttgatgtaatcccatgtgtgcctatttttac-tttgttttctgtgcttttgaggtcttactccaaaaattccttgcccaagccaatgtcat-aagcatttatccaa-cttttcctctagtagttttacagttttggatcttacgtttaagtctttagtccactctgagttgacttttg-taagtggtgagaggtaggagtctagtttcattcttctgcatgtttagattcag--tttcccagcaccatttattgaagaaaccgttctttccccagtgtgtgttcttggcacctttattgaaattcagttggct-taaatgcgtgaa--tttttttctggat i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152647093 986 - 185818997 atggctggatagtattctattgtgtatgtatatc-ca--tttttttaatccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacatattgatttcatttcatttggatatatacccaaaataggggttgctgggtcttagtgtagttccattgttaatattttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatatcctcaccaacatttgtta-ttttttttttaatctttttgatagtcactattctaatgggggtatggtgac-ttctcattgaggttctaatttgcattttcctgatgattagtgatactgagcatattttcatatacctgttttca-----------tcttttgagaaatgtctcttcacatcttttgcccattttcaaagtgaatttatttatttctttttctgttgacttgtttgagtttcatatatattctggatcttaactgcttgtgaaatgcatggtttatgactattttctttcattctgtaggctatctcgtcaactctgtttattaagg-ttttactgtgcagaagtctttcagtttgatataatcccatgtgt--ctatttttac-tttgttttctgggcttttaaggtcttaccccaaaaattccttgcccagaccaatgtcat-aagcatttatccaattttttcctctagtagttttatagtttcagatcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatgtttaaattcagttttttccagcaccatttattg-agagactgttctttccccagtgtgtgttcttggcacctttattgcaattcagttggct-taaatgtgtgaa--tttttttctggat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159455487 985 - 192294377 atggctggatagtattctattgtgtatgtatatc-ca--tttttttaatccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacatattgatttcatttcatttggatatatacccaaaataggggttgctgggtcttagtgtagttccattgttaatattttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatatcctcaccaacatttgtta--ttttttttttatctttttgatagtcactattctaatgggggtatggtgac-ttctcattgaggttctaatttgcattttcctgatgattagtgatactgagcatattttcatatacctgttttca-----------tcttttgagaaatgtctcttcacatcttttgcccattttcaaagtgaatttatttatttctttttctgttgacttgtttgagtttcatatatattctggatcttaactgcttgtgaaatgcatggtttatgactattttctttcattctgtaggctatctcgtcaactctgtttattaagg-ttttactgtgcagaagtctttcagtttgatataatcccatgtgt--ctatttttac-tttgttttctgggcttttaaggtcttaccccaaaaattccttgcccagaccaatgtcat-aagcatttatccaattttttccactagtagttttatagtttcagatcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatgtttaaattcagttttttccagcaccatttattg-agagactgttctttccccagtgtgtgttcttggcacctttattgcaattcagttggct-taaatgtgtgaa--tttttttctggat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5900138 987 + 9440265 atggctggatagtattctattgtgtatgtatatc-ca--tttttttaatccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacatattgatttcatttcatttggatatatacccaaaataggggttgctgggtcttagtgtagttccattgttaatattttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctccttttcctatatcctcaccaacatttgctattttttttttttatctttttgatagtcactattctaatgggggtatggtgac-ttctcattgaggttctaatttgcattttcctgatgattagtgatactgagcatattttcatatacctgttttca-----------tcttttgagaaatgtctcttcacatcttttacccattttcaaagtgaatttatttatttctttttctgttgacttgtttgagtttcatatatattctggatcttaactgcttgtgaaatgcatggtttatgactattttctttcattctgtaggctatctcgtcaactctgtttattaagg-ttttactgtgcagaagtctttcagtttgatataatcccatgtgt--ctatttttac-tttgttttctgggcttttaaggtcttaccccaaaaattccttgcccagaccaatgtcat-aagcatttatccaattttttccactagtagttttatagtttcagatcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatgtttaaattcagttttttccagcaccatttattg-agagactgttctttccccagtgtgtgttcttggcacctttattgcaattcagttggct-taaatgtgtgaa--tttttttctggat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5639952 982 + 21915920 atggctggatagtattctattgtgtatgtatatc-ca-ttttttttaatccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacctattgatttcatttcatttggatatatacccaaaataggggttgctgggtcttagtgtagttctgttgctaattttttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatatcctcaccaacatttgtta-----tttttttatctttttgatagtcactattctaatggggttatggtgac-ttctcattgaggttctgatttgcattttcctgatgattagtgatattgagcatattttcatatacctgttttca-----------tcttttgagaaatgtctcttcatatcttttgcccattttcaaagtgaatttatttctttctttttctgttgacttgtttgagtttcatatgtattctggatcttaactgcttgtcaaatgcatggtttatgactactttctttcattctgtaggctatctcaccaactttgtttattaagg-ttttgctgtgcagaaacctttcagtttgatgtaatcccatgtgt--ctatttttac-tttgttttctgggctttcaaggtcttaccccaaaaattccttgcccagaccaatgtcat-aagcatttatccaattttttcctctagtagttttatagtttcagatcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatgtttaaattcag-tttttccagcaccatttattg-agagacggttctttccccagtgtgtgttcttggcacctttattgaaattcagttggct-taaatgtgtgaa--tttgtttctggat i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12284392 982 - 90373283 atggctggatagtattccattgtgtacgtatatc-ca--tttttttaatccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacatattgatttcatttcatttggatatatacccaaaataggggttgctgggtcttagtgtagttctgttgttaattttttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctttcctttttctatatcctcaccaacatttgtt------tttttttatctttttgatagtcactattctaatgggggtatggtgac-ttcccattgaggttctgatttgcattttcctgatgattagtgatattgagcatattttcatatacctgttgtca-----------tcttttgagaacagtctcttcatatcttttgcccattttcaaagtgaatttctttatttctttttctgttgagttgtttgagtttcatatatattctggatcttagctgcttgtcaaatgcatagtttgtgactattttctttcattctgtaggctacctcgtcaactctgtttattaagg-ttttgctgtgcagaagcctttcagtttgatataatcccatgtgt--ctatttttat-tttgttttctgggcttttaaggtcttaccccaaaaattccttgcccagaccaatatcat-aagcatttatccaattttttcctctcgtagttttatagtttcagatcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatgtttaaattcag-tttttccagcaccatttattg-agagactgttctttccccagtgtgtattcttggcacctttattgaaattcagttggct-taaatgtgtgaatttttttttctggat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 612566 981 + 1337817 atggctggatagtattctattgtgtatgtatatc-ca--tttgtttaatccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgggggtgcagatatctcttcaacctattgatttcatttcatttggatatatacccaaaataggggttgctgggtcttagtgtagttctgttgctaattttttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatatcctcaccaacatttgtta-----tttttttatctttttgatagtcactattctaatgggggtatggtgac-ttctcattgaggttctgatttgcattttcctgatgattagtgatattgagcatattttcatatacctgttttca-----------tcttttgagaaatgtctcttcatatcttttgcccattttcaaagtgaatttatttctttctttttctgttgacttgtttgagtttcatatgtattctggatcttaactgcttgtcaaatgcatggtttatgactgctttctttcattctgtaggctatctcaccaactttgtttattaagg-ttttgctgtgcagaaacctttcagtttgatataatcccatgtgt--ctatttttac-tttgttttctgggcttttaaggtcttaccccaaaaattccttgcccagaccaatgtcat-aagcatttatccaattttttcctctagtagttttatagtttcagctcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatgtttaaattcag-tttttccagcaccatttattg-agagacggttctttccccagtgtgtgttcttggcacctttattgaaattcagttggct-taaatgtgtgaa--tttctttctggat i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 590948 981 - 3237654 atggctggatggtattccattgtgtacgtatatc-ca--tttttttactccattcatccattgatgaacacttagcttgttcctatattttgcctattgtgaataatgctgcaataaacatgagggggcagatatctcttcaacatattgatttcatttcatttggatatatacccaaaataggggttgctctgtcttagtgtagttctgttgttaattttttgagaaaactctatgctgttttccataatgcctgctccaatttaccttcccaccaacagtggctaagtgctctcctttttctatatcctcaccaacatttgtta-----tttttttatctttttgatagtcactattctaatgggggtatggtgac-ttctcattgaggttctgatttgcattttcctgatgattagtgatattgagcatattttcatacacctgttgtca-----------tcttttgagaaacatgtcttcatatcttttgcctattttcaaagcgaatttatttatttctttttctgttgagttgtttgcgtttcatatatattctggaccttaactgcttgtcaaatgcatagtttatgactattttctttcattctgtaggctgtctcgtcaactctgtttattaagg-ttttgctgtgcagaagcctttcagtttgatataatcccatgtgt--ctatttttac-tttgttttctgggcttttaaggtcttaccccaaaaattccttgcccagaccaatgtcat-aagcatttatctaattttttcctctagtagttttatagtttcagatcttacatttaagtcttcagtccactctgagttgacttttg-taagtggtgaaaggtaggaatctagtttcattcttctgcatttttaaattcac-tttttccagcaccatttattg-agtgactgttctttccccagtgtgtgttcttggcacctttattgaaattcagttggct-taaatgtgtgaa--tttttttctggat i colAng1.NW_012116933v1 C 0 C 0 s proCoq1.NW_012147997v1 1165790 993 - 2312742 atggctgaatgttattccattgtgtatatatatcacattttttttttagcctttcatctcttggtgggcacttaggttgttctcata--ttggctattgtgactagtactgcagtaaacatggggatgtagatatatcttcaacagattgatttaatttcctttagatatacacccaaaatacagatcgctatgccttagggtagtgctatttgtaattttatgagaaacttccatactgttttccataatggctgcttaaatttaccttctcaccaacagtgtataag-actttcccttttctacgtccttgccagcattttttt----ttttttttgtctttttgataacagctattctaactggggtaagaagataatctcattgtggttttgatttgaatttccctgatgattagtaatgtcgaacatattttcttacacctgttataatttgtatgtcttcttttgaaaaatatctctttatatcttttgcccatttttaa--tcaaattatttggtgtttttgctattgaattatttgagttccttatatgttctggatattaaccctttgtcagttatatagctcgtgaatattttctcccattctgtaggttgtctcttt-actctattgattgtttcctttgctgcatagaagccttttagtttgatgtaatcccacttat--atatttttgcttttgttgcctgtgctttcgaggtcttatccaaaaa--tccttgtctagatcactgtcatgaagcatttctcctatgttttcatctggtagctttatagttttgggta-tacatttaagtctttaattcatgttgagttgatttttt-taagtggtgggagataagtgtctagtttcattcttctgcatgtggagatccaa-ttttcccagcactatttattgaagtgcttctcctttctccaatgtgtgttctttgcacctttgttgaaaatcagctggctgtaaatgtgtgga--ttcatttctggat i proCoq1.NW_012147997v1 C 0 I 30390 e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1974638.000000 s hg38.chr21_GL383578v2_alt 17822 415 + 63917 agtctat-----------------------------------------------------------------------------taatttttgtattcattgtagagacggggttttgctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctcagcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttattgtagagacctttcacctccttggtcaaattcattcatcggtattttgttggttttatagctattgtaaatgggattctgttcttgatttctttttttagaaaattcgttgttggcatatagaaacattacggatttttgtgtttattatgtatacagcaactttactgaatttgtttattagttccagtagttttttggttgattctatagg--tttttttataattaagatcatgtcttctgcaaacagagacaacttga s panTro5.chr21 854529 413 + 33445071 actctat-----------------------------------------------------------------------------taatttttgtattcattttagagacggggttttgctatgttgctcaggagggtcttgaactcctggactcaagcaatttgcctgcctcagcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttattgtagagacctttcacctccttggtcaaattcattgatcggtattttcttggttttatagctattgtaaatgggattatgttcttgatttc----tttagaaagttcgctgttggcatatagaaacattactgatttttgtgtttattatgtatacagcaactttactgaatttgtttattagttccagtagttttttggttgattctataggtttttttttataattaagatcatgtcttctgcaaacggagacaatttga i panTro5.chr21 C 0 C 0 s panPan2.chr21 14539907 412 + 46275980 actctat-----------------------------------------------------------------------------taatttttgtattcattttagagacggggttttgctatgttgctcaggagggtcttgaactcctggactcaagcaatttgcctgcctcagcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttattgtagagacctttcacctccttggtcaaattcattgatcggtattttcttggttttatagctattgtaaatgggattatgttcttgatttc----tttagaaagttcgctgttggcatatagaaacattactgatttttgtgtttattatgtatacagcaactttactgaatttgtttattagttccagtagttttttggttgattttatagg-ttttttttataattaagatcatgtcttctgcaaacggagacaatttga i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 451971 416 - 13858734 agtctat-----------------------------------------------------------------------------taatttttgtattcattgtagagacagggttttgctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctcagcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttattgtaaagaactttcacctccttggtcaaattcattcatcggtattttgttggttttatagctattgtaaatgggattatgttcttgatttctttttttagaaagtttgctgttggcatatagaaacattactgatttttgtgtttattatgtatacagcaactttactgaatttgtttattagttccagtagttttttggttgattctatagg-tttttttaataattaagatcatgtcttctgcaaacagagacaatttga i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152648079 491 - 185818997 actctatttttgtattcattgtattcattgtatatgaatgaatacacattgtgttcattgtattcattcattttgtattcattctaatttttgtattcattgtagacatagggtttt-ctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctccgcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttatcatagagatctttcacctccttggtcaaatttattcatcagtattttgtttgttttatagctattgtaaatgggattacgtgcttgatttcattttttagaaagttctctgttggcatatagaaatactactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaatagtttttt-gtcgattctatagg-ttttttttataattaagataatgtcttgtgcaaacagagacaatttga i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159456472 490 - 192294377 actctatttttgta-tcattgTATTCATTGTATATGAATGAATACACATTGTGTTCATTGTATTCATTCATTTTGTATTCATTctaatttttgtattcattgtagacatagggtttt-ctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctccgcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttatcgtagagatctttcacctccttggtcaaatttattcatcagtattttgtttgttttatagctattgtaaatgggattacgtgcttgatttctttttttagaaagttctctgttggcatatagaaatactactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaatagtttttt-gtcgattctatagg-ttttttttataattaagatcatgtcttctgcaaacagagacaatttga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5901125 490 + 9440265 actctatttttgta-tcattgtattcattgtatatgaatgaatacacattgtgttcattgtattcattcattttgtattcattctaatttttgtattcattgtagacatagggtttt-ctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctccgcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttatcgtagagatctttcacctccttggtcaaatttattcatcagtattttgtttgttttatagctattgtaaatgggattacgtgcttgatttctttttttagaaagttctctgttggcatatagaaatactactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaatagtttttt-gtcgattctatagg-ttttttttataattaagatcatgtcttctgcaaacagagacaatttga i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5640934 492 + 21915920 actctatttttgtgttcattgTATTCATTGTATATGAATGAATACACATTGTGTTCATTGTATTCATTCATTTTGTATTCATTctaatttttgttttcattgtacacatagggttttgctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgccttcgcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttatcatagagatctttcaccttcttggtcaaatttattcatcagtattttgttcattttatagctattgtaaatgggattctgtgcttgatttctttttttagaaagttctctgttggcatatagaaatgctactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaataatttttt-gtcgattctatagg-ttttttttataattaagatcatgtcttctgcaaacagagacaatttga i cerAty1.NW_012002954v1 C 0 I 32 s chlSab2.chr2 12285374 491 - 90373283 actctatttttgtattcattgTATTCATTGTATATGAATAAATACACATTGTGTTCATTGTATTCATTCATTTTGTGTTCATTctaatttttgtattcattgtagacatagggttttgctatgttgctcagaagggtctcaaactcctggactcaagcaatttgcctacctccgcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcAtatagtttttatcgtagagatctttcacctccttggtcaaatttattcatcagtattttgtttgttttatagctattgtaaatgggattacgtgcttgatttctttttttagaaagttctctgttggcatatagaaatactactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaatag-atttt-gtcgattctatagg-tttttttaataattaaaatcatgtcttctgcaaacagagacaatttga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 613547 492 + 1337817 gctctatttttgtgttcattgtattcattgtatatgaatgaatacacattgtgttcattgtattcattcattttgtattcattctaatttttgttttcattgtacacatagggttttgctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctccgcctcccaaagtgctgggactacaggtgtgatccactgtgcctggcccatagtttttatcatagagatctttcacctccttggtcaaatttattcatcagtattttgttcattttatagctattgtaaatgggattacgtgcttgatttctttttttagaaagttctctgttggcatatagaaatgctactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaataatttttt-gtcgattctatagg-ttttttttataattaagatcatgtcttctgcaaacagagacaatttga i manLeu1.NW_012107264v1 C 0 I 32 s colAng1.NW_012116933v1 591929 484 - 3237654 actctatttttgta---------ttcattgtatatgaatgaatatacattgtattcattgtattcattcattttgtattcattctaatttttgtattcattgtagacatagggttttgctatgttgctcaggagggtctcgaactcctggactcaagcaatttgcctgcctccacctcccaaagtgctgggactacaggtgtgatccactgtgcctggcctatagtttttatcgtagagctctttcacctccttggtcaaatttattcatcagtagtttgttcattttatagctattgtaaatgggattatgtgcttgatttctttttttagaaagttctcttttggcatatagaaatactactgatttttgtgtttattttgtatacagccactttactgaatttgtttattagttccaatagtttttt-gtcgattctatgggtttttttttatagttaagatcatgtcttctgcaaacagagacaatttga i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=6876.000000 s hg38.chr21_GL383578v2_alt 18237 2 + 63917 ct s panTro5.chr21 854942 2 + 33445071 ct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14540319 2 + 46275980 ct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 452387 2 - 13858734 ct i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152648570 2 - 185818997 ct i rheMac8.chr3 C 0 I 3178 s macFas5.chr3 159456962 2 - 192294377 ct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5901615 2 + 9440265 ct i macNem1.NW_012019910v1 C 0 I 30 s chlSab2.chr2 12285865 2 - 90373283 ct i chlSab2.chr2 C 0 I 20 s colAng1.NW_012116933v1 592413 2 - 3237654 ct i colAng1.NW_012116933v1 C 0 I 30 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e manLeu1.NW_012107264v1 614039 32 + 1337817 I e cerAty1.NW_012002954v1 5641426 32 + 21915920 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=7398.000000 s hg38.chr21_GL383578v2_alt 18239 10 + 63917 --------ctcaatttga s panTro5.chr21 854944 10 + 33445071 --------ctcaatttga i panTro5.chr21 C 0 C 0 s panPan2.chr21 14540321 10 + 46275980 --------ctcaatttga i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 452389 10 - 13858734 --------ctcaatttga i gorGor5.CYUI01015003v1 C 0 C 0 s macFas5.chr3 159456964 18 - 192294377 tttacctctccaatttga i macFas5.chr3 C 0 I 3 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e chlSab2.chr2 12285867 20 - 90373283 I e colAng1.NW_012116933v1 592415 30 - 3237654 I e manLeu1.NW_012107264v1 614039 32 + 1337817 I e cerAty1.NW_012002954v1 5641426 32 + 21915920 I e macNem1.NW_012019910v1 5901617 30 + 9440265 I e rheMac8.chr3 152648572 3178 - 185818997 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=122268.000000 s hg38.chr21_GL383578v2_alt 18249 227 + 63917 caattgaggagcatgtcatttaatttccatgtagttgtacagtttccaaagttcctaatgttattgatatctagatttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagactt-ttttgtggtctaacatatgatctgtcctcgagaatgagagtatttcatttgctgttgattcttcttttgtttttttcttcttccg s panTro5.chr21 854954 228 + 33445071 caattgaggaacatgtcatttaatttccatgtagttgtacagtttccaaagttcctaatgttattgatatctagatttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaaaacttgttttgtggtctaacatatgatctgtcctcgagaatgagagtattccatttgctgttgattcttctcttgtttttctcttcttctg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14540331 228 + 46275980 caattgaggaacatgtcatttaatttccatgtagttgtacagtttccaaagttcctaatgttattgatatctagatatttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaaaacttgttttgtggtctaacatatgatctgtcctcgagaatgagagtattccatttgctgttgattcttctcttgtttttctcttctttgg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 452399 228 - 13858734 caattgaggagcatgtcatttaatttccatgtagttgtacagtttccaaagttcctaatgttattgatatctagatttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagacttgttttgtggtctaacatatgatctgtcctcgagaatgagagtattccatttgctgttgattcttcttttgtttttttcttctttcg i gorGor5.CYUI01015003v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e calJac3.chr21 19122691 274 + 50472720 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e chlSab2.chr2 12285867 20 - 90373283 I e colAng1.NW_012116933v1 592415 30 - 3237654 I e manLeu1.NW_012107264v1 614039 32 + 1337817 I e cerAty1.NW_012002954v1 5641426 32 + 21915920 I e macNem1.NW_012019910v1 5901617 30 + 9440265 I e rheMac8.chr3 152648572 3178 - 185818997 I e macFas5.chr3 159456982 3 - 192294377 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=8678.000000 s hg38.chr21_GL383578v2_alt 18476 12 + 63917 ttcattcttttc s panTro5.chr21 855182 12 + 33445071 ttcattcttttc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14540559 12 + 46275980 ttcattcttttc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 452627 12 - 13858734 ttcattcttttt i gorGor5.CYUI01015003v1 C 0 C 0 s calJac3.chr21 19122965 12 + 50472720 ttcatctttccc i calJac3.chr21 I 274 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e chlSab2.chr2 12285867 20 - 90373283 I e colAng1.NW_012116933v1 592415 30 - 3237654 I e manLeu1.NW_012107264v1 614039 32 + 1337817 I e cerAty1.NW_012002954v1 5641426 32 + 21915920 I e macNem1.NW_012019910v1 5901617 30 + 9440265 I e rheMac8.chr3 152648572 3178 - 185818997 I e macFas5.chr3 159456982 3 - 192294377 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1365.000000 s hg38.chr21_GL383578v2_alt 18488 1 + 63917 a s panTro5.chr21 855194 1 + 33445071 a i panTro5.chr21 C 0 I 17 s panPan2.chr21 14540571 1 + 46275980 a i panPan2.chr21 C 0 I 17 s gorGor5.CYUI01015003v1 452639 1 - 13858734 a i gorGor5.CYUI01015003v1 C 0 I 17 s chlSab2.chr2 12285887 1 - 90373283 a i chlSab2.chr2 I 20 C 0 s calJac3.chr21 19122977 1 + 50472720 a i calJac3.chr21 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e colAng1.NW_012116933v1 592415 30 - 3237654 I e manLeu1.NW_012107264v1 614039 32 + 1337817 I e cerAty1.NW_012002954v1 5641426 32 + 21915920 I e macNem1.NW_012019910v1 5901617 30 + 9440265 I e rheMac8.chr3 152648572 3178 - 185818997 I e macFas5.chr3 159456982 3 - 192294377 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=10512.000000 s hg38.chr21_GL383578v2_alt 18489 9 + 63917 --------cctttttag s panTro5.chr21 855212 9 + 33445071 --------cctttttag i panTro5.chr21 I 17 C 0 s panPan2.chr21 14540589 9 + 46275980 --------cctttttag i panPan2.chr21 I 17 C 0 s gorGor5.CYUI01015003v1 452657 9 - 13858734 --------cctttttag i gorGor5.CYUI01015003v1 I 17 C 0 s macFas5.chr3 159456985 9 - 192294377 --------cctttttct i macFas5.chr3 I 3 C 0 s chlSab2.chr2 12285888 9 - 90373283 --------cctttttct i chlSab2.chr2 C 0 C 0 s calJac3.chr21 19122978 17 + 50472720 tttgcatgtctttttct i calJac3.chr21 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e colAng1.NW_012116933v1 592415 30 - 3237654 I e manLeu1.NW_012107264v1 614039 32 + 1337817 I e cerAty1.NW_012002954v1 5641426 32 + 21915920 I e macNem1.NW_012019910v1 5901617 30 + 9440265 I e rheMac8.chr3 152648572 3178 - 185818997 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=13795.000000 s hg38.chr21_GL383578v2_alt 18498 3 + 63917 ttt s panTro5.chr21 855221 3 + 33445071 ttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14540598 3 + 46275980 ttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 452666 3 - 13858734 ttt i gorGor5.CYUI01015003v1 C 0 C 0 s macFas5.chr3 159456994 3 - 192294377 ttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5901647 3 + 9440265 ttt i macNem1.NW_012019910v1 I 30 C 0 s cerAty1.NW_012002954v1 5641458 3 + 21915920 ttt i cerAty1.NW_012002954v1 I 32 C 0 s chlSab2.chr2 12285897 3 - 90373283 ttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 614071 3 + 1337817 ttt i manLeu1.NW_012107264v1 I 32 C 0 s colAng1.NW_012116933v1 592445 3 - 3237654 ttt i colAng1.NW_012116933v1 I 30 C 0 s calJac3.chr21 19122995 3 + 50472720 ttc i calJac3.chr21 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e aotNan1.NW_018487195v1 6058819 317 + 9889416 I e cebCap1.NW_016107322v1 7010457 594 - 14377064 I e saiBol1.JH378168 2475594 4323 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e rheMac8.chr3 152648572 3178 - 185818997 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=15445283.000000 s hg38.chr21_GL383578v2_alt 18501 2513 + 63917 tcttgcctaattgctctagctaagactactagtactacattgaatagaagtggtgaaaacgaacatccttgtcttgttccagaatttagaagtaaagcttttaacatgtttccagtcagtaagatgttagctctgggtctttccatatatggcc-ttatagtgttgaggtacattccttctgtaactaatttgtttagggtttttctcataaaggaatgctaaattttattgaatgctttttctttgtctattgggatgatcatttggtttacttccttcattctgttgatgtgatatatcacatttatttgattttcatacgtttgaacattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatgtgctgttggattcagtttgataatattttgttgatgatttttaaattcattttcaacaggaatattgacctgtagttttc-----tt----------ttttttttcttgtgtccttgtcagattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaatttttcatcatggtttgagaagaattggcatttgttctttaaatattggtagaatttggcaatgaaatcattcaaacctgggcttttatttgatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatctcagtagtttgtatgtgtccaggaaattgtccatttatgtcaggttctccaatttgttgatggttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgatgcctcctgtttcatctcttattttatttattcaagtagcc-ttttt--ccttaattggcatagctaagggtttgtcaattttgttaa----------------aaaagcaactactcattttattgatcttttgta--tttttttagtctctattttgtttatttctggtctaatctttattatttctttccttctatttttgaagttagtttgttctggcttttctagtattttgagatgaaacattatg----ttatttgaaatatttctacattttgatgtaggcattcattgctaaaaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcatttgactc-aagaatttttttaattaaaaataaaataaaatgtcttaattaaaaaatttttaa-attaacacactagttattgaggagcttgtcatttaatttccatgtagttgtacagtttccaaagtccctaatgttattgatatctaga-tttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagacttg-ttttgtggtctaacatatgatccgtcctcgagaatgagagtattccatttgctgttgagaagaaggtgtattctgtggctgttggatggaacactctataaatgtctgttaggtccatttggactagagtgtggtttaactgtactgtttt-cttgttcaatttttgtctagatcacctgtccattgctggatttaggttgttgaagttcactacaattatagtattacagtccttatctccttttaggtctgttaacatttgctttatatatttattcttcaacataagaaaaca-ttttatattgggtgaatataaaattgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaaggtctctttttttctgatgtaagtatagctgctcccactttcttatggttttcatttgcatagaatatctttttttctattccttcactttcaatctatgtatccttacaggtgaagtg-agtctcttagggacagcatataattgggtattgttttcttctccattcagcccctctgctatagtttggatacttgaccctccaaaaatcatgttgaaatttgatccctaatgttaga-gtggagcctactgggaggtgtttgggtcatggagg-----------tgaaatgccttccctggcattggggtgtgtatgagttttcattctg-tgaattcccataaggggtggttgttaaaaagagcctggtacctcccctttccctcactttgctcttgctgtgtgatgcctgcacatgctagctcccatttgccttctgccatgagtggaagcagtttgaggccctcatcagaagcagatatcgaccctatgcttcttgtacaggctgcagaacagtgagccaaataatcctctttta-----aaattacctaccctaaagtattgctttatagcaacaaaaacaaactaagacatcttctatctctgttaattggagatttactttgaatgcaaagccaatttacattcaagggaattattgataggcaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- s panTro5.chr21 855224 2519 + 33445071 tcttgcctaattgctctggctaagactactagtactacattgaatagaagtggtgaaaaggaacatccttgtcttgttccagaatttagaggtaaagcttttaacatgtttccagtcagtaagatgttagctctgggtctttccatatatggcc-ttctagtgttgaggtacattccttctgtaactaatttgtttagggtttttctcataaaggaatgctaaattttattgaatgctttttctttgtctattgggatgatcatttggtttacttccttcattctgttgatgtgatatatcatatttatttgattttcatatgttagaacattcttgcatccctgagttgaatcctatttgattatggtgaatgatcttttcaatgtgctgttggattcagtttgataatattttgttgaggatttttaaattcattttcaacaggaatattgacctgtagttttc---tttt----------ttttttttcttgtgtccttgtcagattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaatttttcatcatagtttgagaagaattggcatttgttctttaaatattggtagaatttggcaatgaaatcattcaaacctgggcttttatttgatgggaggcattttattactaattcaatttagttacttgttgttggtctgttcaggctttctatttctttgtgattcaatctcagtagtttgtatgtgtccaggaaattgtccatttatgtcagattctccaatttgttgatgtttagttgtacataattgtctctaatgatcttctgaatttctgtagtattggttgtgatgcctcctgtttcgtctcttattttatttattcaagtagcctttttt--ccttaattggcatagctaagcatttgtcaattttgttaa----------------aaaagcaactactcattttattgatcttttgta--tttttttagtctctattttgtttatttctggtctaatctttattatttctttccttctatttttgaagttagtttgttcttgtttttctagtattttgagatgaaacattatgttgtttatttgaaatatttctacgttttgatgtaggcattcattgctataaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcatttgactc-aagaatttttttaattaaaaataaaataaaatgtcttaattaaaaaaattttaa-attaacacactagttattgaggagcttgtcatttaatttccatgtagttgtacagtttccaaagtccctaatgttattgatatctaga-tttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagacttg-ttttgtggtctaacatatgatctgtcctcgaaaatgagagtattccatttgctgttgagaagaaggtgtattctgtggctgttggatggaacactctataaatgtctgttaggtccatttggactagagtgtggtttaactgtactgtttt-cttgttcactttttgtctagatcacctgtccgttgctggatttaggttgttgaagttcactacaattatagtattacagtccttatctcctttt-ggtctattaacatttcctttatatatttattcttcaacataagaaaaca-ttttatattgggtgaatataaaattgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaaggtctctttttttctgatgtaagtatagctgctcccactttcttatggttttcatttgcatagaatacttttttttctattccttcactttcaatctatgtatccttacaggtgaagtg-agtctcttagggacagcatataattgggtgttgttttcttctccattcagcccctctgctatagtttgggtacttgaccctccaaaaatcatgttgaaatttgctccctaatgttgga-gtggagcctactgggaggtgtttgggtcatggagg-----------tgaaatgccttccctggcattggggtgtgtatgagttctcattctg-tgaattcccataaggggtggttgttaaaaagagcctggtacctcccctttccctcactttgctcttgctgtgtgatgtctgcacatgctagcccccatttgccttctgccatgagtggaagcagtttgaggccctcatcagaagcagatattgacaccgtgattcttgtacaggctgcagaacagtgagccaaataatcctctttta-----aaattacctaccctaaagtattgctttatagcaacacaaacaaactaagacatcttctatctctgttaattggagatttactttgaatgcaaagccaatttacattcaagggaattattgataggcaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14540601 2516 + 46275980 tcttgcctaattgctctggctaagactactagtactacattgaatagaagtggtgaaaacgaacatccttgtcttgttccagaatttagaggtaaagcttttaacatgtttccagtcagtaagatgttagctctgggtctttccatatatggcc-ttctagtgttgaggtacattccttctgtaactaatttgtttagggtttttctcataaaggaatgctaaattttattgaatgctttttctttgtctattgggatgatcatttggtttacttccttcattctgttgatgtgatatatcatatttatttgattttcatatgttagaacattcttgcatccctgagttgaatcctatttgattatggtgaatgatcttttcaatgtgctgttggattcagtttgataatattttgttgaggatttttaaattcattttcaacaggaatattgacctgtagttttc-----tt----------ttttttttcttgtgtccttgtcagattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaatttttcatcatagtttgagaagaattggcatttgttctttaaatattggtagaatttggcaatgaaatcattcaaacctgggcttttatttgatgggaggcattttattactaattcaatttagttacttgttgttggtctgttcaggctttctatttctttgtgattcaatctcagtagtttgtatgtgtccaggaaattgtccatttatgtcagattctccaatttgttgatgtttagttgtacataattgtctctaatgatcttctgaatttctgtagtattggttgtgatgcctcctgtttcatctcttattttatttattcaagtagcctttttt--ccttaattggcatagctaagcatttgtcaattttgttaa----------------aaaagcaactactcattttattgatcttttgta--tttttttagtctctattttgtttatttctggtctaatctttattatttctttccttctatttttgaagttagtttgttcttgtttttctagtattttgagatgaaacattatgttgtttatttgaaatatttctacgttttgatgtaggcattcattgctataaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcatttgactc-aagaatttttttaattaaaaataaaataaaatgtcttaattaaaata-ttttaa-attaacacactagttattgaggagcttgtcatttaatttccatgtagttgtacagtttccaaagtccctaatgttattgatatctaga-tttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagacttg-ttttgtggtctaacatatgatctgtcctcgaaaatgagagtattccatttgctgttgagaagaaggtgtattctgtggctgttggatgcaacactctataaatgtctgttaggtccatttggactagagtgtggtttaactgtactgtttt-cttgttcactttttgtctagatcacctgtccgttgctggatttaggttgttgaagttcactacaattatagtattacagtccttatctcctttt-ggtctattaacatttcctttatatatttattcttcaacataagaaaaca-ttttatattgggtgaatataaaattgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaaggtctctttttttctgatgtaagtatagctgctcccactttcttatggttttcatttgcatagaatacttttttttctattccttcactttcaatctatgtatccttacaggtgaagtg-agtctcttagggacagcatataattgggtattgttttcttctccattcagcccctctgctatagtctgggtacttgaccctccaaaaatcatgttgaaatttgctccctaatgttgga-gtggagcctactgggaggtgtttgggtcatggagg-----------tgaaatgccttccctggcattggggtgtgtatgagttctcattctg-tgaattcccataaggggtggttgttaaaaagagcctggtacctcccctttccctcactttgctcttgctgtgtgatgtctgcacatgctagcccccatttgccttctgccatgagtggaagcagtttgaggccctcatcagaagcagatattgacaccgtgattcttgtacaggctgcagaacagtgagccaaataatcctctttta-----aaattacctaccctaaagtattgctttatagcaacacaaacaagctaagacatcttctgtctctgttaattggagatttactttgaatgcaaagccaatttacattcaagggaattattgataggcaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 452669 2519 - 13858734 tcttgcctaattgctctggctaagactactagtcctacattgaatagaagtggtgaaaacgaacatccttgtcttgttccagaatttagaggtaaagcttttaacatgtttccagtcagtaagatgttagttctgggtccttccatatatggcc-ttatagtgttgaggtacattccttctgtaactaatttgtttagggtttttctcataaaggaatgctaaattttattgaatgctttttctttgtctattgggatgaccatttggtttacttccttcattctgttgatgtgatatatcacatttatttgattttcatacgttagaacattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatgtgctgttggattcagtttgataatattttgttgaggatttttaaattcattttcaacaggaatattgacctgtagttttc----ttt----------ttttttttcttgtgtccttgtcagattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaatttttcatcatagtttgagaagaattggcatttgttctttaaatattggtagaatttggcaatgaaatcattcaaacctgggcttttatttgatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatctcagtagtttgtatgtgtccaggaaattgtccatttatgtcaggttctccaatttgttgatggttagttgtttataattgtctctaatgatcttctgaatctctgtagcattggttgtgatgcctcctgtttcatgtcttattttatttattcaagtagcctttttt--ccttaattggcatagctaagggtttgtcaattttgttaa----------------aaaagcaactactcattttattgatcttttgta--tttttttagtctctattttgtttatttatggtctaatctttattatttctttccttctatttttgaagttagtttgttcttgcttttctagtattttgagatgaaacattatgttgtttgtttgaaatatttctacattttgatgtaggcattcattgctataaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttctattttcatttgactc-aagaatttttttaattaaaaataaaataaaatgtcttaattaaaaaatttttaa-attaacacactagttattgaggagcttgtcatttaatttccatgtagttgtacagtttccaaagtccctaatgttattgatatctaga-tttttttcccttgtggtcggaaaagatacttgatatgattttgatttttaaaaatttgtgaagacttg-ttttgtggtctaacatatgatccgtcctcgagaatgagaatattccatttgctgttgagaagaaggtgtattctgtggctgttggatggaacactctataaatgtctgttaggtccatttggactagagtgtggtttaactgtactgtttt-cttgttcactttttgtctagatcacctgtcctttgctggatttaggttgttgaagttcactacaattatagtattacagtccttatctccttttaggtctattaacatttgctttatatatttattcttcaacataagaaaaca-ttttatattgggtgaatataaaattgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaaggtctctttttttctgatgtaagtatagctgctcccactttcttatggttttcatttgcatagaatatctttttttctattccttcactttcaatctatgtatccttacaggtgaagtg-agtctcttagggacagcatataattgggtattgttttcttctccattcagcccctctgctatagtttggatacttgaccctccaaaaatcatgttgaaatttgctctctaattttgga-gtggagcctactgggaggtgtttgggtcatggagg-----------tgaaatgccttccctggcattggggtgtgtatgagttctcattctg-cgaattcccataagagctggttgttaaaaagagcctggtacctcccctttgcctcactttgctcttgctgtgtgatgtctgcacatgctagctcccatttaccttctgccatgagtggaagcagtttgaggccctcatcagaagcagatattgataccatgcttcttgtacaggctgcagaacagtgagccaaataatcctctttta-----aaattacctaccctaaagtattgctttatagcaacacaaacaaactaagacatcttctatctctgttaattggacatttactttgaatgcaaagccaatttacattcaagggaattattgataggcaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i gorGor5.CYUI01015003v1 C 0 C 0 s macFas5.chr3 159456997 2529 - 192294377 tcttgcctaattgct----ctaagacttctagtaccacattggatagaagtcgtgaagacgaacatcctggtcttgttccagaatttagaggaaaagcttttaacatgtttccagtcagtgtgatatcagttctgggtctttccatatatggcc-ttatagtgttgaggtacattgcttctgtaactaatttgtttagggtttttatcataaaggaatgctacattttattgaatgttttttctttctctattgggatgatcatttggttttcctccttcattctgttgatgtgatatagcacatttatttgatttttgtatgttagaccattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatgtgcggttggattcagtttgataatattttgttgaggatttttaaattcattttcgacaggaatattgacctgtagttttcttttttt----------ttttttttcttgtgtccttgtctgattttggtatcacagtaataatggccttggaggatgaatttggaagaattctc----tccaattttgcataataatttgagaagaattggtatttgttctttaaatattggtagaatttgacaatgaaatcattcaaacctgggcttttatttcatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatcttggtagtttgtatgtgtccaggaaattgtccatttatgtcaagttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgcgatacctcctttttcatctcttattttatttattcaagtagtcttttttt-ccttaattggcatagctaagggtttgtcaattttgttta---ttttttttaa-------gcaactattcattttattgatcttttgta--tttttttagtctccattttgtttatttttggtctaatctttattatttctttccttctaattttgaagtttgtttgttcttgtttttctagttttttgagatgaaacattacattgtttatttgaaatctttctacattttgatgtgggcattaattgctataaacttccttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcaattgactc-aagacattttaaaattaaaaataaaataaaatgttttaattaaaaagttttaaa-attaacccactagttattcaggagcatgccatttaatttccatgtagttgtacggtttccaaagttcctaatgttattgatgtctaga--ttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaagtgtgtg--gacttg-ttttgtggtctaacacatgatctgtcctggagaatgagagtattccatttgctgttgagaagaaagtgtattctatggctgttggatggaacactctggaaatgtctgttaggtccatttggactagagtgtggtttaactctactgtttt-tttgttcactttttgtctagatcacatgtccattgctggatttgggctgttgaagttcactacaattatagtattacagtccttatctccttttaagtctattaacatttgctttatatatttattcttcaacataagaaaacatttttatattgggtgaatacaaaattgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaagatatctttttttctaatgtaagtataactactcctactttcttctggttttcatttgcatagaatatcttttgttctattccttcactttcaatctatatatccttacaggtgaagtg-agtttcttagggacagtatataattgggtattgttttcttctccattcagcccctctgctatagtttggatacttgaccctccaaaaatcatgttgaaatttgctctctaacgttgga-gtggagcctgctgggaggtgttggagtcatggaggtgaatttatcatgaaatgccttccttggcattggggtgtgtatgagttctcattctgttaaattcccatgaggggtggttgtcaaaaa-------gtacctcccctttccttcactttgctcttgctgtgtgatgtctgcacatactagctcccatttgccttctgccatgtgtggaagcagtttgaggccctcatcagaagcagatattggcaccatgcttcttgtacaggctgcagaacagtgagtgaaataatcctcttttc-----aaattacctaccctcaggtattgctttatagcaacacaaacaaactaagatatcctctatctctgttaattggagatttactttgaatgcaaggccaatttacattcaagggaattattgataggaaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5901650 2528 + 9440265 tcttgcctaattgct----ctaagacttctagtaccacattggatagaagtcgtgaagacgaacatcctggtcttgttccagaatttagaggaaaagcttttaacatgtttccagtcagtgtgatatcagttctgggtctttccatatatggcc-ttatagtgttgaggtacattgcttctgtaactaatttgtttagggtttttatcataaaggaatgctacattttattgaatgttttttctttctctattgggatgatcatttggttttcctccttcattctgttgatgtgatatagcacatttatttgatttttgtatgttagaccattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatgtgcggttggattcagtttgataatattttgttgaggatttttaaaatcattttcgtcaggaatattgacctgtagttttc--ttttt----------ttttttttcttgtgtccttgtctgattttggtatcacagtaataatggccttggaggatgaatttggaagaattctc----tccaattttgcataataatttgagaagaattggtatttgttctttaaatattggtagaatttgacaatgaaatcattcaaacctgggcttttatttcatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatcttggtagtttgtatgtgtccaggaaattgtccatttatgtcaagttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgcgatacctcctttttcatctcttattttatttattcaagtagtcttttttt-ccttaattggcatagctaagggtttgtcaattttgttaa-t-ttttttttaa-------gcaactattcattttattgatcttttgta--tttttttagtctccattttgtttatttttggtctaatctttattatttctttccttctaattttgaagtttgtttgttcttgtttttctagttttttgagatgaaacattacattgtttatttgaaatctttctacattttgatgtgggcattaattgctataaacttccttcttagaactgtttttgctgtatctgatacatttgtgatgtattgtgtttccattttcaattgactc-aagacattttaaaattaaaaataaaataaaatgttttaattaaaaagttttaaa-attaacccactagttattcaggagcatgccatttaatttccatgtagttgtacggtttccaaagttcctaatgttattgatgtctaga--ttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaagtgtgtg--gacttg-ttttgtggtctaacacatgatctgtcctggagaatgagagtattccatttgctgttgagaagaaagtgtattctatggctgttggatggaacactctgcaaatgtctgttaggtccatttggactagagtgtggtttaactctactgtttt-tttgttcactttttgtctagatcacatgtccattgctggatttgggctgttgaagttcactacaattatagtattacagtccttatctccttttaagtctattaacatttgctttatatatttattcttcaacataagaaaacatttttatattgggtgaatacaaaattgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaagatatctttttttctaatgtaagtataactactcctactttcttctggttttcatttgcatagaatatcttttgttctattccttcactttcaatctatatatccttacaggtgaagtg-agtttcttagggacagtatataattgggtattgttttcttctccattcagcccctctgctatagtttggatacttgaccctccaaaaatcatgttgaaatttgctctctaacgttgga-gtggagcctgctgggaggtgttggagtcatggaggtgaatttatcatgaaatgccttccttggcattggggtgtgtatgagttctcattctgttaaatccccatgaggggtggttgtcaaaaa-------gtacctcccctttccttcactttgctcttgctgtgtgatgtctgcacatactagctcccatttgccttctgccatgtgtggaagcagtttgaggccctcatcagaagcagatattggcaccatgcttcttgtacaggctgcagaacagtgagtgaaataatcctcttttc-----aaattacctaccctcaggtattgctttatagcaacacaaacaaactaagatatcctctatctctgttaattggagatttactttgaatgcaaggccaatttacattcaagggaattattgataggaaaagtctaactactgccactttgttacttattttctaattgttttgtgggttcc---------tttttt----- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5641461 2528 + 21915920 tctcgcctaattgct----ctaagacttccagtactacattggatggaagtggtgaaaacgaacatcgtggtcttgttccagaatttaaaggaaaagcttttaacatgtttccagtcagtgtgatattagttctgggtctttccatatatggcc-ttatagtgttgaggtaccttgcttctgtaactaatttgtttagggtttttctcataaaggaatgctacattttattgaacgctttttctttctctattgggatgatcatttggttttcctccttcattctgttgatgtgatatatcacatttatttgattttcatatgttagaccattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatatgctgttggattcagtttgctaatattttgttgaggattttaaaattcatttttaacaggaatattgacctgtagttttc-----tt----------ttttttttcttgtgtccttgtctgattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaattttgtataatagtttgagaagaattggtatttgttctttaaatattggtagaatttgacaatgaaatcattcaaacctgggcttttatttcatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatcttggtagtttgtatgtgtccaggaaattgtccatttatgtcaagttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgatacctcctttttcatctcttattttatttattcaagtagtcttttttt-tcttaattggcatagctaagggtttgtcaattttgtttttt-ttttttttaaaaaaaacacaagtattccttttattgatcttttgtatttttttttagtctccattttgtttatttttcgtctaatctttattatttctttccttctaattttgaagtttgtttgttcttgtttttctagttttttgagatgaaacattccgttgtttatttgaaatctttctacattttgatgtgggcattaattgctataaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcaattgactc-aagacatttttaaattaaatataaaataaaatgttttaattaaaaagttttaaa-attaacccactagctattcaggagcatgtcatttaatttccatgtagttgtacggtttccaaagttcctaatgttattgatgtctaga--ttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatgtgtg--gacttg-ttttgtggtctaacacatgatctgtcctg------gagagtattccatttgctgttgagaagaaagtgtattctgtggctgttggatggaacactctggaaatgtctgttaggtccatttgtactagagtgtggtttaactctactgtttt-tttgttcactttttgtctagatcacatgtccattgctggatttgggctgttgtagttcactacaattatagtattacagtccttatctcctttaaggtctattaacatttgctttatatttttattcttcaacataagaaaacatttttatattgggtgaatacaaaattgttatatcttcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacggtttttgtttaagatctctttttttctaatgtaagtataactactcctactttcttctggttttcatttgcatggaatatctttt-ttctgttccttcactttcaatctatatatccttacaagtgaagtg-agtttcttaggaacagtatataattgggtattgttttcttctccattcagcccctctgctatagtttggatacttgaccctccaaaaatcatgttgaaatttgctctctaatgttgga-gtggagcctgcagggaggtgttggggtcatggaggtgaatttatcatgaaatgccttcattggcattggggtgtgtatgagttctcattctgttaaattcccatgaggggtggttgtcaaaaa-------gtacctcccatttccttcactttgctcttgctgtgtgatgtctgcacatactagctcccatttgccttcggctatgagtggaagcagtttgaggccctcatcagaagcagatattggcaccatgcttcttgtacaggctacagaacagagagtgaaataattctcttttc-----aaattacccacactcaggtattgctttatagcaacacaaacaaactaagacatcctctatctctgttaattggagatttactttgaatgcaaggccaatttacattcaaggcaattattgataggaaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12285900 2525 - 90373283 tcttgcctaattgct----ctaagacttctagtactacattggatagaagtggtgaaaaccaacatcctggtcttgttccagaatttagaggaaaagcttttaacatgtttccagtcagtgtgatattagttctgggtctttccatacatggcc-ttatagtgttgaggtaccttgcttctgtaactaatttgtttagggtttttctcataaaggaatgctacatttcgttgaatgctttttctttctctattgggatgatcatttggttttcctccttcattctgttgatgtgatatatcacatttatttgattttcatatgttaaaccattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatgtgctgttggattcagtttgataatattttgttgaggatttttaaattcattttcaactggaatattgacctgtagttttc-----tttctttctttcttttttttcttgtgtccttgtctgattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaattttgcataatagtttgagaagaattggtatttgttctttaaatattggtagaatttgacaatgaaatcattcaaacctgggcttttatttcatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatctaggtagtttatatgtgtccaggaaattgtccatttatgtcaagttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgatacctcctttttcatctcttattttatttattcaagtagtcttttttt-ccttaattggcatagctaagggtttgtcaattttatttt-t-tttt-----a---aaaggcaactattcattttattgatcttttgta--tttttttagtctccattttgtttatttttggtctaatctttattatttccttccttcgaattttgaagtttgtttgttcttgtttttctagttttttgagatgaaacattacattgtttatttgaaatctttctacattttgatgtgggcattaattgctataaactttcttcttagaactgtttttgctgtatccgatacatttgtgatatattgtgtttccattttcaattgactc-aagacattttaaaataaaaaataaaataaaatgttttaattaaaaagttttaaa-attaacccactagctattcaggagcatgtcatttaatttccatgtagttgtacggtttccaaagttcctaatgttattgatgtctaga--ttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatgtgtg--gacttg-ttttgtggtctaacacatgatctgtcctggagaatgagagtattccatttgctgttgagaagaaagtgtattctgtggctgttggatggaacactctggaaatgtctgttaggtccatttggactagagtgtggtttaactctactgtttt-tttgttcactttttgtctagatcacatgtccattgctggatttgggctgttgaagttcactacaattatagtattacagtccttatctccttttaggtctattaacatttgctttatatatttattcttcaacataagaaaacatttttatattgggtggatacaaaattgttatatcctcttgctgtatttacccctttataattatattatgtccttcattgtttcttttcacagtttttgtttaagatctctttttttctaatgtaagtataactactcctactttcttctggttttcatttgcatagaatatctttttttctattccttcactttcaatctatatatccttacaggtgaagtg-agtttcttagggacagtatataactgggtattgttttcttctccattcagcccctctgctatagtttggatacttgaccctccaaaaatcatgttgaaatttgctctctaatgttgga-gtggaccctgctgggaggtgttggagtcatggaggtgaatttatcatgaaatgccttccttggcattggggtgtgtatgagttctcattctgttaaattcccatgaggagtggttgtcaaaaa-------gtacctcc-----ccttcactttgctcttgctgtgtgatgtctgcacatactagctcccatttgccttttgccatgagtggaagcagttttaggccctcatcagaagcagatattggcaccatgcttcttgcacaggctgtagaacagtgagtgaaacaatcctcttttc-----aaattacccaccctcaggtattgctttatagcaac----acaaactaagacatcctctatctctgttaattggagatttactttgaatgcaaggccaatttacattcaagggaattattgataggaaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 614074 2531 + 1337817 tctcgcctaattgct----ctaaggcttccagtactacattggatagaagtggtgaaaacgaacatcgtggtcttgttccagaatttaaaggaaaagcttttaacatgtttccagtcagtgtgatattagttctgggtctttccatatatggcc-ttatagtgttgaggtaccttgcttctgtaactaatttgtttagggtttttctcataaaggaatgctacattttattgaatgctttttctttctctattgggatgatcatttggttttcctccttcattctgttgatgtgatatatcacatttatttgattttcatatgttagaccattcttgcatccctgagttgaatcctatttgatcatggtgaatgatcttttcaatgtgctattggattcagtttgctaatattttcttgaggattttaaaattcatttttgacaggaatattgacctgtagttttc-----tt----------ttttttttcttgtgtccttgtctgattttggtatcagagtaataatggccttggaggatgaatttggaagaattctc----tccaattttgcataatagtttgagaagaattggtatttgttctttaaatattggtagaatttgacaatgaaatcattcaaacctgggcttttatttcatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtggttcaatcttggtagtttgtatgtgtccaggaaattgtccatttatgtcaagttctccaatttgttgatgtttagttgttcataattgtctctaataatctgctgaatttctgtagtattggttttgatacctccttttgcatctcttattttatttattcaagtagtctttttttcccttaattggcatagctaagggtttgtcaattttgtttt-t-ttttttttaa---aaacacaagtattcattttattgatcttttgtatttttttttagtctccattttgtttatttttcatctaatctttattatttctttccttctaattttgaagtttgtttgttcttgtttttctagttttttgagacgaaacagtccgttgtttatttgaaatctttctacattttgatgtgggcattaattgctataaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcaattgactc-aagacatttttaaattaaatataaaataaaatgttttaattaaaaagttttaaa-attaacccactagctattcaggagcatgccatttaatttccatgtagttgtacgatttccaaagttcctaatgttattgatgtctaga--ttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatgtgtg--gacttg-ttttgtggtctaacacatgatctgtcctggagaatgagagtattccatttgctgttgagaagaaagtgtattctatggctgttggatggaacactctggaaatgtctgttaggtccatttgtactagagtgtggtttaactctactgtttt-tttgttcactttttgtctagatcacatgtccattgctggatttgggctgttgtagttcactacaattatagtattacagtccttatctcctttaaggtctattaacatttgctttatatttttatccttcaacataagaaaacatttttatattgggtgaatacaaaattgttatatcttcttgctgtatttacccctttataattatattatggccttcattgtttcttttcacagtttttgtttaagatatctttttttctaatgtaagtataactactcctactttcttctggttttcatttgcatagaatatc-ttttttctgttccttcactttcaatctatatatccttacaagtgaagtg-agtttcttaggaacagtatataattgggtattgttttcttctccattcagcccctctgctataatttggatacttgaccctccaaaaatcatgttgaaatttgctctctaatgttgga-gtggagcctgcagggaggtgttggggtcatggaggtgaatttatcatgaaatgccttcattggcattggggtgtgtatgagttctcattctgttaaattcccatgaggggtggttgtcaaaaa-------gtacctcccatttccttcactttgctcttgctgtgtgatgtctgcacatactagctcccatttgccttcggctatgagtggaagcagtttgaggccctcatcagaagcagatattggcaccatgcttcttgtacaggctacagaacagcgagtgaaataatcctcttttc-----aaattacccacactcaggtattgctttatagcaacacaaacaaactaagacatcctctatctctgttaattggagatttactttgaatgcaaggccaatttacattcaagggaattattgataggaaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 592448 2528 - 3237654 tcttgcctaattgct----ctaagacttctagtactatattggatagaagtggtgaaaacgaacatccaggtcttgttccagaatttagaggaaaagcttttaacatgtttccagtcagtgtgatattagttctgggtctttccatatatggcc-ttatagtgttgaggtaccttgcttctgtaactaatttgtttagggtttttctcataaaggaatgctacattttattgattgctttttctttctctgttgggatgatcatttggttttcctccttcattctgttgatgtgatatatcacatttatttgattttcatatgttagaccattcttgaatccctgggttgaatcctatttgatcatggtgaatgatcttttcaatgtgctgttggattcagtttgataatattttgttgaggatttttaaattcattttcgacaggaatattgacctgtagttttt---tttt----------ttttttttcttgtgtccttgtctgattttggtatcagagtaataatggtcttggaggatgaatttggaagaattctc----tccaattttgcataataatttgagaagaattggtatttgttctttaaatattggtagaatttgacaatgaaatcattcaaacctgggcttttatttcatgggaggcattttattactaattcaatttagttacttgttattggtctgttcaggctttctatttctttgtgattcaatcttggtagtttgtatgtgtccagaaaattgtccatttatgtcaagttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgatacctcctttttcatctcttattttatttattcaagtagtctttttt--cctcagttggcatagctaagggtttgtcaattttgttta-t-ttttttttga---a---gcaactattcattttattgaccttttgta-ttttttttagtctccattttgtttatttttggtctaatctttattatttctttccttctaattttgaagttagtttgttcttgtttttctagttttttgagatgaaacattacgttgtttatttgaaatcttgctacgttttgatgtgggcattaattgctataaactttcttcttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcaattgactc-aagacatttttaaattaaaaataaaataaaatgttttaattaaaaagttttaaa-attaacccactagctattcaggagcatgtcatttaatttccatgtagttgtatggtttccaaagttcctaatgttattgatgtctaga--ttttttcccttgtggtcagaaaagatacttgatatgactttgatttttaaaaatgtgtg--gacttg-ttttgtggtctaacacatcatctgtcctggagaatgagagtattccatttgctgttgagaagaaagtgtattctgtggctgttggatggtacactctggaaatgtccgttaggtctatttgtactagagtgtggtttaactctactgttct-tttgttcactttttgtctggatcacatgtccattgctggatttgggctgttgaagttcactacaattatagtattacagtccttatctcctttaaggtctattaacatttgctttatatatttattcttcaacataagaaaacacttttatattgggtgaatacaaaagtgttatatcctcttgctgtatttacccctttataattatattatggccttcattgtttcttttcaccatttttgtttaagatctctttttttctaatgtaggtataactactcctactttgttctggttttcatttgcatagaatatctttttttctgttccttcactttcaatctatatatccttacaggtgaagtg-agtttcttagggacagtatataattgggtattgttttcttctccattcagcccctctactatagtttggatacttgaccctccaaaaatcatgttgaaatttgctctctaatgttgga-gtggagcctgctgggaggtgttggggtcatggaggtgaatttatcatgaaataccttccttggcattggggtgtgtatgagttctcattctgttaaatttccatgaggggtggttgtcaaaaa-------gtacctcccctttccttcactttgctcttgctgtgtgatgtctgcacatactagctcccatttgccttctgccatgagtggaagcaatttgaggccctcatcagaagcagatattggcaccatgcttcttgtacaggctgcagaacagtgagtgaaataatcctcttttc-----aaattacccaccctcaggtattgctttatagcaacacaaacaaactaagacatcctctatctctgttaattggagatttactttgaatgcaaggccaatttacattcaagggaattattgataggaaaagtctaactactgccactttgttacttattttctaattgttttgtaggttcc---------tttttt----- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19122998 2498 + 50472720 tgttgcctaattactctggctaagacttctagtactatattgaatagaagtagtcaaaacaaccatccttgtcttgttccagaatttagaggaaaagctcttaacatgtttctagtcagtaagatgttagttctgggtttttccatatacggcctttattgtattgaggta-attccttctacacctaatgtatttagggtttttgtcatgaaggaatgctaaattatatggaatgctttttctttgtctgttgggatgataatttgttttttgtccttcattccattgatgtgatatatcatgtttatttgattttcatgtgttaaaccattcttgcattcctgagttgaatcctatttgatcatggtaaatgatcttttaaatgtgttgttggattcagtttgataatattttggtgaggattttaaaattcattttcaacagaaatattgacttatagttttc-----------------ttttttaaattgtgtccttgtctgattttggtatcagggtaatgatggccttggagaatgaatatggaagaattctctccatccagttttgcataatagtttgagaataattggtatttgttctttaaatattgggagaattcagcaataaaatcactcaaacctaggattctatttgatgagaggcattttattacttattaaatttagttacttgttatttatctcttcagattttctattccttagtgattcaatcttggtagtttgtatgtgtccaggaaattgtct----gtgtcaggttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgattcctcc-tttttatcttttatttcatttatttgagtagtcttttttt-ccttagttggtatagctaagggtttgtcaattttactt----tttttttaaa---aaaaacaactatttatttcattgatc---tgta---ttttttagtatatat----tttatttctgatctaattt---ttctttcctt-ctactaattttgaagttagtttgttcttgtttttctagttttttgagatgaaacattatgttgtttatttgaaatctttctatattttgatataggcattcattgctataacttttctttttagaactgtttttgctgtatctgatacatttgtgatatattgtgtttccattttcatttgacac-aaaaaaatttt-aaataaaaatgaaataaaatgtttcaattaaaagtttttaaagattagcccattagttatgcaggagcatgttgtttaatttccatgtggttgtacagtttccaaagttcctaatgttattgatgtctagaatttttttccc-tgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagccttg-ttttgtggtgtaacatatgatctgtcgttgagaatgaaaatattccacgtgata-tgagaagagagtgtattctgtaactgctggatggaacactctgtaaatgtctgttaggtctatttggactagagtgtggtttaa------tgttttctttgttcattttttgtctagatcacctgtctattgctggatttgggtttttgaagttcactataattacagtattacagtctttctctctttttaggtctactaacatttgcttt-tatatttattcttcaatataagaaaacatttttatgttgagtgaatatataagtgttatatcctcttgatgtattgacccctt--------tattatggctttcattgttccttttcacagtttttgcttaa-atctctttttttctggtacaagtgtagctactcctgctttcttatggttttcatttgcatagtatatctttttttctatttcttcactttcaatctatgtatccttacatgtgaagtgaagtctcttagggacagcatataactgagtattgttttcttctctgttcaacccctctgctacagtttggatactcgaccctcc-aaaatcgtgttgaaatttgttccctaatgttggaggtggagcatactgggaggtgtttgggttagggaggtgaatttctcatgaaatgccttccctggcattggggtgtgtttgagttctcattctg-ttaatttccatgactgcacattgttaaaaagagcctggtatctcccttttttctcactttgctcttaccatgtgatgtctgcacatgctaactccaatttgccttctgccataagtggaagcactgtgagaccctcatcagaaggagata-----------cttcttgtatgggctgcagaatggtgagcgaaataatcctcttttcttaataaactacttatcctcagaaattgctttatagcaaggcaaacaaactaaaacatcttctagctctgttaattagaggtttactttgaatgtaaagccaatttacattcaagggaattattgataggcaaaccctaatctctgctagtttgttatttgttttccagttgttttgtaggttct-------------------- i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7011051 2521 - 14377064 tcttgcctaattactctggctaagacttctagtactatattgaatagaagtagtcaaaacaagcattcttgtcttctttcagaatttagaggaaaagcttt---catgtttgcagtcagtaagatgttagttctgggtttttccatatatggcctttattgtattgaggtacattccttctatacctaatatatttagggtttttgtcatgaaggaatgctaagttatattgaatgctttttctttgtctattgggatgatcatttgttttttgtccttcattctgttgatatgatatatcatgtttatttgattttcatgtgttaaaccattcttgcattcctgagttgagtcctatttgatcatggtgaatgatcttttcaatgtgttgttggattcagtttgataatattttggcgaggatttttaaattcattttcaacagaaatattgacttatagttttc-----------------tttttt-aattgtgtccttgtctgattttggtatcagggtaatgatggccttggagaatgaatttggaagaattctgtccatccagttttgcataatagtttgagaagaattggtgtttgttctttaaatattggtaggatttggcaataaaatcattcaaacctgggcttctatttgatgagaggtattttattactaattcaatttagttacttgttattgatctgttcaggttttctattccttagtgattcaatcttggtattttgtatgtgtccaggaaattgtcc----atgtcaggttctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgattcctccttttttatcttttattttatttatttgagtagtcttttttt-ccttagttggtatagctaagggtttgtcaattttattta-tatattttttta---aaaaacaactatttatttcattgatcttttgta---ttttttagtatctat----tttatttatgatctaattt---ttatttctttccttctaattttgaagttagtttgttcttgtttttctagttttttgagatgaaacattatgttgtttatttgaaatctttctatatttggatataggcattcattgctataaactttcttcttagaactgtttttgctgtatctgatatatttgtgatatactgtgtttccattttcatttgacac-aaaaaattttt-aattaaaaatgaaataaaatgtttcaattaaaagtttttaaaaattaacccattagttatgcaggagcatgttgtttaatttccatgtggttgtacagtttccaaagttcctaatgttattgatgtctagattttttttcccttgtggtcagaaaagatacttgatatgattttgatttttataaatttgcgaagccttgtttttgtggtgtaacatatgatctgtccttgagaatgaaaatattccatgtgctattgagaagaaagtgtgttctgtgactgctggatggaacactctgtaaatgtctgttaggtctatttggactagagtgtggtttaa------tgttttctttgttcactttttgtccagatcacctgtccattgctggatttgggtttttgaagttcactacaattacagtattacagtctttctctctttttaggtctactaacatttgcttt-tatatttattcttcaacataagaaaacatttttatgttgagtgagtatataattgtcatatcctcttgatgtattgacccctttataattatattatggctttgattgcttcttttcacagtttttgcttaa-atctctttttttctgataaaagtatagctactcctgctttcttatggttttcatttgtgtagtatatctgtttttctatttcttcactttcaatctatgtatccttacatgtgaagtgaagtctcttagggacagcatataagtgagtatcgttttcttctctattcagcccctctgctatagtttggatactcgaccctcc-aaaattatgttgaaattttttccctaatgttggaggtggagtctactgagaggtgtttgtgtcatggaggtgaatttctcgtgaaatgccttccctg------------ttttgagttctcattctg-ttaattcccatgacagctcattgttaaaaagagcctggtacctcccttttccctcactttgcccttaccatgtgatgtctgcgcatgctagctccaatttgccttctgccagaagtggaagcactgtgaggccctcatcagaagcagata-----------cttcttgtatgggctgcagaatgatgaaccaaataatcctcttttcttaataaactacgtaccctcaggtattgctttatagcaacacaaac-aactaagatatcttctagctctgttaattagagatttactttgaatgtaaagccaatttacattcaagggagttattgataggcaaaccctaatcactgctactttgttatttattttctaattgttttgtaggttcttttttttctttttttttttt i cebCap1.NW_016107322v1 I 594 C 0 s aotNan1.NW_018487195v1 6059136 2489 + 9889416 tcttgcctaattactctggctaagacttctagtgctatattgaatagaagtagtcaaaacaagcatccttgtcttgttccagaatttagagcaaaagcttttaacatgtttccagtcagtaagatgttagttctgtgtttttccatatatggcctttattgtattgaggtacattgcttctatacctaatatgtttagggtttttgtcatgaaggaatgctaaattatattgaatgctttttctttgtctattgggatgatcatttgttttttgtccttcattctgttgatgtgatatatcatgtttatttgattttcatatgttaaaccattcttgcattcctgagttgaatcctatttgattatggtgaatgatctttccaatgtgttgttggattcagtttgataatattttggtgaggatttttaaatacattttcaacagaaatattgacttatagttttc-----------------tttttttaattgtgtccttgtctgattttggtatcagggtaatgatggccttggagaatgaatttggaagaattctctccatccagttttgcataatagttt---aagaattggtatttgttctttaaatattagtagaattcagcaataaaatcattcaaacctgggcttctatttgatgagaggcattttattactaattcaatttagttacttgttatctatctgctcaggttttctattccttagtgattcaatcttggtagtttgtatgtgtccaggaaattgtcc----atgtcagattctccaatttgttgatgtttagttgttcataattgtctctaatgatcttctgaatttctgtagtattggttgtgattcctcc-tttttatcttttat----tttatttgagtagtcttttttt-ccttagttggtatagctaagg----gtcaattttattta-tatattttt--a---ataaacaactatttatttcattgatcttttgta---ttttttagtatatat----tttatttctgatctaattt---ttatttatttccttctaattttgaagt---tttgttcttgtttttctagttttttgagatgaaacattgta----ttatttgaaatctttctatattttgatacaggcattcattgctataaactttcttcttagaactgtttttgctgtatgtgatacatttgtgatatattgtgtttccattttcatttgacacaaaaaaattttt-aattaaaaatgaaataaaatgtttcaattaaaagtttttcaaaattaacccattagttatgcaggagcatgttgtttaattttcatgcagttgtacagtttccaaagttcctaatgttattgatgtctagattttttttcccttgtggtcagaaaagatacttgatatgattttgatttttaaaaatttgtgaagccttg-ttttgtggtgtagcatatgatctgtccttgagaatgaaaatgttccacgtgttattgagaagaaagtgtattctgtgactgctggatggaatactctgtaaatgtctgttaggtctacttggactacagtgtg-------------gttttctttgttcattttttgtctagatcacctgtctattgctgcatttgggtttttgaagttcactacaattacagtattacagtctttctctctttctaggtctactaacatttgcttt-tatatttattcttcaacataagaaaacatttttatgttgggtgaatatataattgttatatcctcttgatgtagtgacccttt------------atggctttcattgtttcttttcacagtttttgcttaa-atctctctttttctgatacaagtatagctactcctgctttcttatggttttcatttgcatagcatatctttttttcaatttcttcactttcaagctatgtatccttacatgtgaagtgaagtctcttagggacagcatataactgagtattgttttcttctctattcagcccctctgctatagtttggatactcgaccctcc-aaaatcgtgttgaaatttgttccctaatgttggaggtggagtctactgggaggtgtttgggttatggaggtgaatttctcatgaaatgccttccctggcattggggtgtgtttgagttctcattcag-ttaattcccatgacagctcattgttaaaaagagcctggtacctcccttttccctcactttgctcttaccatgtgatgtctgcacatgctagctccaatttgccttctgccctaagtggaagcactgtgaggccctcatcagaagcagata-----------cttcttgtacgggctgccaaatggtgagccaaataattctcttttcttaataaactacttaccctcaggtattgctttatagcaacacaaacaaactaagacatcttctagctctgttaattagaggtttactttgaatgtaaagccaatttacattcaagggaattattgataggcaaaccctaatcactgctactttgttatttattttctaattgttttgtagtttct---------ttttttttttt i aotNan1.NW_018487195v1 I 317 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e saiBol1.JH378168 2475594 4323 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e rheMac8.chr3 152648572 3178 - 185818997 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=8639187.000000 s hg38.chr21_GL383578v2_alt 21014 1206 + 63917 ctttcttcctctcttacagtcttcttttgaggttgagtgattttcactagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggctttcaaatgccaagctatagttatggcaagttactttaaaatgataacaacttaactacaattgcaaagaaaaaaaaggaataaaaaaagctgtacattttaactacattctcatcccaaattttgaatttttattatcataatttcaatttttatattgcctgtttcttaatgaattattataattattaattttgataattttgtcttatagttttatactaaagatatgtgttttcagaatcataagttatctattattgcagtatttgaataacaatcatggtaccatcaatttcctttggtttgtagaactctctgtagcatttttcataggacaggtctggtagcaataagtttcctcagtttttgtttgtctgggaatgtctttatttctccttcatttttga-----agcttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcgtattatcttctggcctgcaagatttctgctgagaagtc----ttctgcctggcatattagatctccattatatgctatttgcttc-ttttttctcactgctttcaggaat-ctttttttgtttagacctttgagagtttgattataatgtatcttagagtattcttatttgggttgaatctaattagtgacctatgatcttcctaacctgaataattttatccttctacagatttgggaaattttgtgctattatttctttgatttatcattccacccctttgtctttctcattttcctttttaactt-aattaacccaaatatttgctcttttgatgtagttccatagatcctatatgctttctgtgttccgttttgtttttttctcttttattgtc--tatgtattttcaaatatgctttctttgagcttactgac--tctttcttctgtttgatcaattctgctgttcatggtctttattacatttttcattttattcattgtatttttggctccaggatttctgtttggtgtttttattattttaatctctctgttaagtttatgttaaatttctg---atttttttgttttactgaattttgctgagcttcctt s panTro5.chr21 857743 1206 + 33445071 ctttcttcctctcttacagtcttcttttgaggttaagtgattttcactagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggctttcaaatgtcaagctatagttatagcaagttactttaaaatgataacaacttaactacaattgcaaag-aaaaaaaggaataaaaaaagctgtacattttaactacattctcatcccaaattttgaatttttattatcataatttcaatttttatattgcctgttccttaatgaattattatagttattaattttgataattttgtcttatagttttatactaaagatatgtgttttcagaatcataagttatctattattgcagtatttgaataacaatcatggtatcatcaatttcctttggtttgtagaactctctgtagcatttttcataggacaggtctggtagcaataaatttcctcagtttttgtttgtctgggaatgtctttatttctccttcatttctga-----agcttactaggtaaaatatttttggttgacagttaattttattcagcattctgaatatattatcgtattatcttctggcctgcaagatttctgctgagaagtc----ttttgcctggcatattagatctccattatatgctatttgcttctttttttctcactgctttcaggaat-ctttttttgtttagacctttgagagtttgattataatgtatcttagagtgttcttatttgggttgaatctaattagtgacctatgatcttcctaacctgaataattttatccatctacagatttgggaaattttctgctattatttgtttgatttatcattccacccctttgtctttctcattttcctttttaactt-aattaacccaaatatttgctcttttgatgtagttccatagatcctatatgctttctatgttccgttttgtttttttctcttttattctc--tatgtattttcaaatatgttttctttgagcttactgat--tctttcttctgtttgatcagttctgctgttcatggtctttattacatttttcattttattcattgtatttttggctccaggatttctgtttggtgtttttattattttaatctctctgttaagtttatgttaaatttctg---atttttttgttttactgaattttgctgagcttcctt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14543117 1206 + 46275980 ctttcttcctctcttacagtcttcttttgaggttaagtgattttcactagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggctttcaaatgtcaagctatagttatagcaagttactttaaaatgataacaacttaactacaattgcaaag-aaaaaaaggaataaaaaaagctgtacattttaactacattctcatcccaaattttgaatttttattatcataatttcaatttttatattgcctgttccttaatgaattattatagttattaattttgataattttgtcttatagttttatactaaagatatgtgttttcagaatcataagttatctattattgcagtatttgaataacaatcatggtatcatcaatttcctttggtttgtagaactctctgtagcatttttcataggacaggtctggtagcaataaatttcctcagtttttgtttgtctgggaatgtctttatttctccttcatttctga-----agcttactaggtaaaatatttttggttgacagttaattttattcagcattctgaatatattatcgtattatcttctggcctgcaagatttctgctgagaagtc----ttttgcctggcatattagatctccattatatgctatttgcttctttttttctcactgctttcaggaat-ctttttttgtttagacctttgagagtttgattataatgtatcttagagtgttcttatttgggttgaatctaattagtgacctatgatcttcctaacctgaataattttatccttctacagatttgggaaattttctgctattatttctttgatttatcattccacccctttgtctttctcattttcctttttaactt-aattaacccaaatatttgctcttttgatgtagttccatagatcctatatgctttctatgttccgttttgtttttttctcttttattctc--tatgtattttcaaatatgttttctttgagcttactgat--tctttcttctgtttgatcagttctgctgttcatggtctttattacatttttcattttattcattgtatttttggctccaggatttctgtttggtgtttttattattttaatctctctgttaagtttatgttaaatttctg---atttttttgttttactgaattttgctgagcttcctt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 455188 1206 - 13858734 ctttcttcctctcttacagtcttcttttgaggttaagtgattttcactggttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggctttcaaatgccaagctatggttatagcaagttactttaaaatgataacaacttaactacaattgcaaagaaagaaaaggaataaaaaaagctgtacattttaactacactcccatcccaaattttgaatttttattatcataatttcaatttttatattgcctgttccttaatgaattattatagttattaactttgataattttgtcttatagttttatactaaagatatgtgttttcagaatcataagttatctattattgcagtatttgaataacaatcatggtaccatcaatttcctttggtttgtagaactctctgtagcatttttcataggacaggtctggtagcaataaatttcctcagtttttgtttgtctgggaatgtctttatttctccttcatttctga-----agcttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcatattatcttctggcctgcaagatttctgctgagaagtc----ttttg-ctggcatattagatctccattatatgctatttgcttctttttttctcactgctttcaggaat-ctttttttgtttagacctttgagagtttgattataatgtatcttagagtgttcttatttgcgttgaatctaattagtgacctatgatcttcctaacctgaataattttatccttctacagatttgggaaattttctgctattatttctttgatttatcattccacccctttgtctttctcattttcctttttaactt-aattaacccaaatatttgctcttttgatgtagttccatagatcctatatgctttctatgttccattttgtttttttctcttttattctc--tatgtattttccaatatgctttctttgagcttactgac--tctttcttctgtttgatcaattctgctgttcatggtctctattacatttttcattttattaattgtatttttggctccagaatttctgtttggtgtttttattattttaatctctctgttaagtttatgttaaatttctg---atttttttgttttactgaattttgctgagcttcctt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152651750 1201 - 185818997 ctttcttcctctcttacagtcttcttccgaggttaagtgattttttctagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttatagcaagttactttaaactgataacaatttaactatgattgcaaag--aaaaaaggaatttaaaaagctgtacatttaaagtacattctcatcctaaattttgaatttttattatcataatttaaatttttatattgcttgtttcttaatgaattattatagttattaattttgatagtt-----ttatagttttatactaaagatatgtgttttcagaatcataagttatctattgttgtagtatttgaataacaatcatggtaccatcattttcctttggtttgtagaactctctgtagcatttttcataggacaggtgtggtagcaataaatttcctcactttttgtttgtctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccagggatattagagctccattatatgctcttcacttc-ttttttctcactgccttcaggact-ctttttttgttttgacctttgagagttcgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctgtgatcttcctgacctgaatatttttatccttcttcagatttgggaaattttctgctgttatttctttgaattatcattccacccctttgtctttctcatttttctttttaacat-aagtaacccacatatttgctcttttgatgtacttccatagatcctatatgctttct-tgttccatttcatttttttctcttttattctc--tatttgttttcaaatatcctttctttgagcttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aacctctgttt-gtttttttattattttattctctccgttaactttatgttaaatttctg---attcttttgttttactgaattttgctgagcttcctt i rheMac8.chr3 I 3178 C 0 s macFas5.chr3 159459526 1201 - 192294377 ctttcttcctctcttacagtcttcttccgaggttaagtgattttttctagttgtatgttttgattccttgcttttttatttttaatgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttatagcaagttactttaaactgataacaatttaactatgattgcaaag--aaaaaaggaatttaaaaagctgtacatttaaagtacattctcatcctaaattttgaatttttattatcataatttaaatttttatattgcctgtttcttaatgaattattatagttattaattttgatagtt-----ttatagttttatactaaagatatgtgtTTTCAGAATCATAAGTTATCTATTGTTGTAGTATTTGAATACCAATCATGGTACCAtcattttcctttggtttgtagaactctctgtagcatttttcataggacaggtgtggtagcaataaatttcctcactttttgtttgtctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccagggatattagagctccattatatgctattcacttc-ttttttctcactgccttcaggact-ctttttttgttttgacctttgagagttcgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctttgatcttcctgacctgaatatttttatccttcttcagatttgggaaattttctgctattatttctttgaattatcattccacccctttgtctttctcatttttctttttaacat-aagtaacccacatatttgctcttttgatgtacttccatagatcctatatgctttct-tgttccatttcatttttttctcttttattctc--tatttgttttcaaatatcctttctttgagcttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aacctctgttt-gtttttttattattttattctctccgttaactttatgttaaatttctg---attcttttgttttactgaattttgctgagcttcctt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5904178 1201 + 9440265 ctttcttcctctcttacagtcttcttccgaggttaagtgattttttctagttgtatgttttgattccttgcttttttatttttaatgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttatagcaagttactttaaactgataacaatttaactatgattgcaaag--aaaaaaggaatttaaaaagctgtacatttaaagtacattctcatcctaaattttgaatttttattatcataatttaaatttttatattgcctgtttcttaatgaattattatagttattaattttgatagtt-----ttatagttttatactaaagatatgtgttttcagaatcataagttatctattgttgtagtatttgaataacaatcatggtaccatcattttcctttggtttgtagaactctctgtagcatttttcataggacaggtgtggtagcaataaatttcctcactttttgtttgtctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccagggatattagagctccattatatgctattcacttc-ttttttctcactgccttcaggact-ctttttttgttttgacctttgagagttcgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctatgatcttcctgacctgaatatttttatccttcttcagatttgggaaattttctgctattatttctttgaattatcattccacctctttgtctttctcatttttctttttaacat-aagtaacccacatatttgctcttttgatgtacttccatagatcctatatgctttct-tgttccatttcatttttttctcttttattctc--tatttgttttcaaatatcctttctttgagcttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aacctctgttt-gtttttttattattttattctctccattaactttatgttaaatttctg---attcttttgttttactgaatttggctgagcttcctt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5643989 1204 + 21915920 ctttcttcctctcttacagtcttctttcaaggttaagtgattttttctagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttatagcaagttactttaaactgataacaatttaactatgattgcaaag--aaaaaaggaatttaaaaagctgtacatttaaagtacattctcatcctaaactttgaatttttatt---ataatttaaatttttatattgcctgtttcttaatgaattattatagttattaattttgatagttttgtcttatagttttatactaaagatatgtgttttcagaatcataagttatctattgttgtagtatttgaataacaatcatggtaccatcattttcctttggtttgcagaactctctgtagcatttttcataggacaggtttggtagcaataaattttctcactttttgtttgtctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccagggatattagagctccattatatgctattcacttc-ttttttctcactgccttcaggact-ctttttttgttttgacctttgagagttcgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctatgatcttcctgacctgaatatttttatccttcttcagatttgggaaattttctgctattatttctttgaattatcattccacccctttgtctttctcatttttctttttaacat-aagtaacccacatatttgctcttttgatgtacttccatagatcctatatgctttctatgttccatttcatttttttctcttttattctc--tatttgttttcaaatatcctttctttgagcttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aacctctgttt-gtttttttattattttattctctctgttaactttatgttaaatttctg---attcttttgttttactgaattttgctgagcttcctt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12288425 1207 - 90373283 ctttcttcctctcttacagtcttcttttgaggttaagtgattttttctagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttatagcaagttacttt-aactgataacaatttaactatgattgcaaag--aaaaaaggaatttaaaaagctgtacattttaagtacattctcatcctaaattttgaatttttattatcataatttaaatttttatattgcctgtttcttaatgaattattatagttattaatttttatagttttatcttatagttttatactaaagatatgtgtTTTCAGAATCATAAGTTATCTATTGTTGTAGTATTTGAATAACAATCATGGTACCAtcattttcctttggtttgtagaactctctgtagcatttttcataggacaggtttcgtagcaataaatttcctcactttttgtttgtctgggaatgtctttatttctccttcatttctgaggaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccaggcatattagagctccactatatgctatttgcttc-ttttttctcactgccttcaggactcctttttttgttttgacctttgagagtttgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctatgatcttcctgacctgaatatttttatccttcttcagatttggaaaattttctgctattatttctttgaattgtcattccacccccttgtctttctcatttttctttttaactt-aagtaacccaaatatttgctcttttgatgtagttccatagatcctatatgctttctatgttccatttcatttttttctcttttactctc--tatatattttcaaatatcctttctttgagcttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aacctctgttt-ggttttttattattttaatctctctgttaagtttatgttaaatttctg---attcttttgttttactgaattttgctgaactttctt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 616605 1207 + 1337817 ctttcttcctctcttacagtcttcttccgaggttaagtgattttttctagttgtatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttatagcaagttactttaaactgataacaatttaactatgattgcaaag--aaaaaaggaatttaaaaagttgtacatttaaagtacattctcatcctaaattctgaatttttattatcataattaaaatttttatattgcctgtttcttaatgaattattatagttattaattttgatagttttgtcttatagttttatactaaagatatgtgttttcagaatcataagttatctattgttgtagtatttgaataacaatcatggtaccatcattttcctttggtttgtagaactctctgtagcatttttcataggacaggtgtggtagcaataaatttcctcactttttgtttgtctgggaatgtctttatttgtccttcatttctgaagaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcattctgaatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccagggatattagagctccattatatgctattcacttc-ttttttctcactgccttcaggact-ctttttttgttttgacctttgagagttcgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctatgatcttcctgacctgaatatttttatccttcttcagatttgggaaattttctgctattatttctttgaattatcattccacccctttgtctttctcatttttctttttaacat-aagtaacccacatatttgctcttttgatgtacttccatagatcctatatgctttctatgttccatttcatttttttctcttttattctc--tatttgttttcaaatatcctttcattgagcttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aatctctgttt-gtttttttattattttattctctctgttaactttatgttaaatttctg---attcttttgttttcctgaattttgctgagcttcctt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 594976 1208 - 3237654 ctttcttcttctcttacagtcttctttcgaggttaagtgattttttctagttgtatgttttgattccctgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtgaggcttaccaatgccaacctatagttataacaagttactttaaactgataacaatttaattatgattgcaaag--aaaaaaggaatttaaaaagctgtacatttaaagtacattctcatcctaaattttgaatttttattatcataatttaaatttttatattgcctgtttcttaatgaattattatagttattaattttgatagttttgtcttacagttttatactaaagatatgtgttttcagaatcataagttatctattgttatagtatttgaataacaatcatgataccatcattttcctttggtttgtagaactctctgtagaatttttcataggacaggtttggtagcaataaatttcctcactttttgtttgtctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatatttttggttgacagttgtttttattcagcatcctgcatatattatcctactatcttctggcctgcaagatttctgctgagaagtc----ttctgccaggcatattagagctccactatatgctgttcgcttc-ttttttctcactgccttcaaaact-gtttttttgttttgacctttgagagtttgattataatgtatattagagtgttcttatttggtttgaatctaattagtgacctatgatcttcctgacctgagtatttttatccttcttcagatttgggaaattttctgctattatttttttgaattatcattccacccctttgtctttctcatttttctttttaacgt-aagtaacccaaatatttgctcttttgatgtagttccatagatcctatatgatttctatgttccatttcatttttttctcttttattctc--tatatattttcaaatatcctttctttgagtttactgat--tctttcttctgtttgatcaattctgctgttgatggtctttattacatttttcattttattcattgtatttttggctcca-aacctctgtttggtttctttattattttaatctctctgttaagtttatgttaaatttctg---attcttttgttttaccgaattttgctgagcttcctt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19125496 1173 + 50472720 -ttttttcctcttttacag---tcttttgtgattagatgattttctc------------ttgattccttgcttttttatttttagtgtatcttttgtaggtttttgctttgtggttactgtggggcttacaaatgccagcctacagttatatcaagttattttaaattgataacaacttaacttttattgtaaag-aagaaaaagaatttaaaaagctgtatatttt---aacattttcattccaaatttaaaatttttgt---cataatttacatttttatattgtctgtctcttaatgaattattatagttattaattttgatag-tttgtcttatggttttatactaaagatatgtgtttccagaatcataagttatctatgatggcagtatttgaataacaatcatggtaccatcatctttctttggtttgtagcactccctgtagcattttttgtgggacagatctgagagcaataaatttcctctgtttctgtttttctgggaatgtctttatttctccttcatttatgaagaatagtttactaggtaaaatgtttttggttgatagtggtttttatttagcattctgaatatattttccatctatcttttgtccagcaagatttctgctgagaagtcttctttctgccaggcatattacagctccattacatgctatttgcttc-ttttttctcactgctttca-gact-tgttttttgttttaacctttgagagtttgattataatgtattttacattgttcttat-----ttgaatctgattagtgacctatgatcttcctgacttgaatatttttatccttcctcagttttggaaaattttctgctattatttctttgaattagcaattcacccctttgtctttctcattttcctttttaacttaaagtaacccaagtatttactcatttgatgtagttccacagatactatatgctttctatgttccatttca--tttttctctttccttcatgatgtatgttttcaaatatcctttctttgagctcactgat--atttttttctgtttgat-aattttgctgtcaatggcctttattacatttttcattttattcattgtatttttggctccagggtttctgttt-ggctttatgttctcttaacctttc-----------tgttaaatttctg---atttttttgttttattgaattttgttgagcttcctt i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7013572 1188 - 14377064 cttttttcctctcttacagccttcttttgtgattaggtgattttctctagttgcatgttttgattccttgcttttttatttttagtgtatcttttataggtttttgctttgtggttactgtggggcttac-aatgccagcctacagttatatcaagttattttaaattgataacaacttaactttgattgta----aagaaaaagaattttaaaagctgtatattttaacaacattctcatcccaaattttaaa-ttttgt---cgtaatttacatatttatattgcctgtctcttaattaattattatagttattaattttgatagttttatcttatggttttatactaaagatatgtgtttccagaattgtaagttatctatgatggcagtatttgaatagcaatcatggtaccatcatttttctttggtttgtagaactccctgtagcattttttgtgggacagatctgagagcaataaattttctttgtttctgtttttctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatgtttttggttgacagtggtttttatttagcactctgaatatattatctgactatcttctgtcctgcaagatttctgctgagaagtc----ttctgccaggcatattagatctctattacatgctattttcttc-ttttttttcactgctttca-gact-cgttttttgttttaacctttgagagtttgattataatgtatcttacatcattcttatttgggttgaatctgattagtgacctatgatcttcctgacttgaatatttttatccttcctccgatttgggaatttttctgctattatttctttgaattagcattccaccc--ttgtctttctcattttcctttttaactt-aagtaacccaagtattcactcctttgatgtagttccatagatcctatatgctttctatgttccatttcatttttttctctttccttcatgatgtatattttcaaatatcctttctttgagctcactgat---tttttttctgtttgatcaattttgctgtcaatggtctttattacatttttcatcttattcattgtattttcagctccaggatttctgttt-ggctttatgttctttttatctttc-----------tgttaaatttctg---atttttttgttttattgaattttgttgaacttcctt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6061625 1196 + 9889416 cttttttccactcttacagtcttcttttgtgattaggtgattttctctagttgcacgttttgattccttgcttttttatttttactgtatcttttataggtttttgctttgtggttactgtggggcttacaaatgccagcctacagttatatcaagttattttaaattgataacaacttaactttgattgtaaagaaaaaaaaagaattaaaaaagctgtatattttaacaacattctcatcccaaattttaaatttttgt---cataatttacatttttatattgcctgtctcttaatga---attatagttattaattttgatag-tttgtcttatgggtttatactaaagatatgtgtttccagaatcataagttatctatgatggcagtatttgaataacaatcatggtaccatcatttttctttggtttgtaaaactccctgtagcattttttgtgggacagatctgagagcaatatgtttcc--tgtttctgtttctctgggaatgtctttatttctccttcatttctgaagaatagtttactaggtaaaatgtttttggttgacagtagtttttatttagtactctgaatatattatccgactatcttctgtcctgcaagatttctgctgagaagtc----ttctgccaggcatattagatctccattacatgctatttgcttctttttttctcactgctttca-gact-cgttttttgttttaacctttgagagtttgattataatgtatcttacattgtttttatttgagttgaatctgattagtgacctatgatcttcctgacttgaatatttttatccttcctcagatttgggaatttttttgctattatttctttgaattagcattccacccctttgtctttctcatttt-ctttttaactt-atgtaacccaagtatttactcctttgatgtagttccacagatcctatatgctttctatgtttcatttcatttttttctctttccttcatgatgtatattttcaaatatcctttctttgagctcactgatttttttttttctgtttgatcagttttgctgtggatggtctttcttacatttttcattttattcattgtatttttggctccaggatttctgttt-ggctttatgttcttttaatctttc-----------tgctaaatttctatttttttttttgttttattgaattttgttgagcttcctt i aotNan1.NW_018487195v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e saiBol1.JH378168 2475594 4323 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=3037294.000000 s hg38.chr21_GL383578v2_alt 22220 338 + 63917 aaaacagctattttgaattccttgcataagagatcgcacatctccatcactgtagggtctgttattggtgttttattttgtcattttgatgaggttacattttcctaaatggtcttgttgcttatggatgtgtgatgatatctgcccattgaa-----------------------------------------------------------------------------------------------------------------------------------------------------------------------gattgtgttatgtttcctgagttcgtaaccactgcagctatctcaacactagaggatgctctaagcccagATTTGCCATGAGTCGCATGAGGATGCCAAGGATGTGGTGACTCTGGCAGGGATGAATCCGAGGAAGGTCC----AAG-AAGGTACCCAGGCTGTGAGGGAAAGCTAACCAGGAACCAGAA s panTro5.chr21 858949 412 + 33445071 aaaacagctattttgaattccttgtataagagatcgcacatctccatcactgtagggtctgttattggtgttttattttgtcattttgatgaggttacattttcctaaatggtcttgttgcttatggatgtg---tgatatctgcccattgaagaacttagtatttattccagtcttcacaa--------tctagctatgtttgcaac----------------a--------------------------------t-----------------------------------tctctcctcagagattttaaccagactgattgtgttatgttccctgagctcgtaaccactgcagctatctcaacactagaggatgctctaagcccagatttgccatgagtcgcatgaggctgccaaggatgtggtaactctggcagggatgaatccgaggaaggtcc----aagaaaggtacccaggctgtgagggaaagctaaccaggagccagaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14544323 412 + 46275980 aaaacagctattttgaattccttgtataagagatcgcacatctccatcactgtagggtctgttattggtgttttattttgtcattttgatgaggttacattttcctaaatggtcttgttgcttatggatgtg---tgatatctgcccattgaagaacttagtatttattccagtcttcacaa--------tctagctatgtttgcaac----------------a--------------------------------t-----------------------------------tctctcctcagagattttaaccagactgattgtgttatattccctgagctcgtaaccactgcagctatctcaacactagaggatgctctaagcccagatttgccatgagtcgcatgaggctgccaaggatgtggtaactctggcagggatgaatccgaggaaggtcc----aagaaaggtacccaggctgtgagggaaagctaaccaggagccagaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 456394 414 - 13858734 aaaacagcta-tttgaattccttgtatgagagatcgcacatctccatcactgtagggtctgttattggtgttttattttgtcattttgatgaggttacattttcctaaatggtcttgttgcttatggatgtgtgatgatatctgcccattgaagaacttagtatttattccagtcttcacaa--------tc-----------------------------------------------------------------tagctatgtttgcaaca------------------ttctctcctcagagattttaaccagactgattgtgttatgttccctgagctcgtaaccactgcagctatctcaacactagaggatgctctaagcccagatttgccatgagtcgcatgaggatgccaaggatgtggtgactctggcagggatgaatccgaggaaggtcc----aagaaaggtacccaggctatgagggaaagctaaccaggAACCAGAA i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152652951 415 - 185818997 aaaacagctattttgaattccttgtatgagagatcacacatctccatcgctgtagggtatgttattgatgtcttattttgtcattttgataaggttacattttcctaaatggtcttgatgcttatggatgtctgatgatatctgcccattgaaggacttagtatttattctagtcttcacaat------------------------ctagctgtgtttataaca--------------------------------t-----------------------------------tctctcctcagatattataaccagactgattgggttgtgttccctgagctcatgaccactgcagctatctcaacactagaggatgctctaagcccaggtttgccatgtgtagcataaggatgccaaggatgtggtgactctggcagggatgaatctgaggaaggccc----aagaaaggtactcaggctgcgagggaaagctaaccagagACCAGAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159460727 415 - 192294377 aaaacagctattttgaattccttgtatgagagatcacacatctccatcgctgtagggtatgttattgatgtcttattttgtcattttgataaggttacattttcctaaatggtcttgatgcttatggatgtctgatgatatctgcccattgaaggacttagtatttattctagtcttcacaatctagc--------tgtgtttgtaac----------------a--------------------------------t-----------------------------------tctcctctcagatattttaaccagactgattgggttgtgttccctgagctcgtgaccactgcagctatctcaacactagaggatgctctaagcccagGTTTGCCATGTGTAGCATAAGGATGCCAAGGATGTGGTGACTCTGGCAGGGATGAATCTGAGGAAGGCCC----AAGAAAGGTACTCAGGCTGCGAGGGAAAGCTAACCAGAGACCAGAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5905379 415 + 9440265 aaaacagctattttgaattccttgtatgagagatcacacatctccatcgctgtagggtatgttattgatgtcttattttgtcattttgataaggttacattttcctaaatggtcttgatgcttatggatgtctgatgatatctgcccattgaaggacttagtgtttattctagtcttcacaatctagc--------tgtgtttgtaac----------------a--------------------------------t-----------------------------------cctctcctcagatattttaaccagactgattgggttgtgttccctgagctcgtgaccactgcagctatctcaacactagaggatgctctaagcccagGTTTGCGATGTGTAGCATAAGGATGCCAAGGATGTGGTGACTCTGGCAGGGATGAATCTGAGGAAGGCCC----AAGAAAGGTACTCAGGCTGCGAGGGAAAGCTAACCAGAGACCAGAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5645193 419 + 21915920 aaaacagctgttttgaattccttgtatgagagatcacacatctccatcgctgtagggtatgttattgatgtcttattttgtcattttgataaggttacattttcctaaatggtcttgatgcttatggatgtctgatggtatctgcccattgaaggacttagtatttattctagtcttcacaat------------------------c----------------tagctatgtttgtaaca----------------t-----------------------------------tctctcctcagatattttaaccagactgattgggttgtgttccctgagctcgtgaccactgcagctatctcaacactagaggatgctctaagcccaggtttgccatgtgtagtataaggatgccaaggatgtggtgactctggcagggatgaatctgaggaaggcccaagaaagaaaggtacccaggctgtgagggaaagctaaccagagACCAGAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12289632 415 - 90373283 aaaacagctattttgaattccttgtataagagatcacacatctccatcgctgtagggtatgttattgatatcttattttgtcattttgatgaggttacattttcctaaatggtcttgatgcttatggatgtctgatgatatctgcccatggaaggacttagtatttattctagtcttcacaat----ctagc----tatgtgtgtaac----------------a--------------------------------t-----------------------------------tcttgcctcagatattttaaccagactgattgggttgtgttccctgaactcgtgaccactgcagctatctcaacactagaggatgctctaagcccaggtttgccatgtgtagcatgaggatgccaaggatgtggtgactctggcagggatgaatctgaggaaggccc----aagaaaggtacccaggctgtgagggaaagctaaccagggACCAGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 617812 415 + 1337817 aaaacagctattttgagttccttgtatgagagatcacacatctccatcactgtagggtatgttattgatgtcttattttgtcattttgataaggttacattttcctaaatggtcttgatgcttatggacgtctgatgatatctgcccattgaaggacttagtatttattctagtcttcacaat----ctagc----tatgtttgtagc----------------a--------------------------------t-----------------------------------tctctcctcagatattttaaccagactgatggggttgtgttccctgagctcgtgaccactgcagctatctcaacactagaggatgctctaagcccaggtttgccatgtgtagcataaggatgccaaggatgtggtgactctggcagggatgaatctgaggaaggccc----aagaaaggtacccaggctgtgagggaaagctaaccagagACCAGAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596184 414 - 3237654 aaaacagctattttgaattccttgtataagagatcacacatctccatcgctgtagggtatgttattgatgtcttattttgtcattttgatgaggttacattttcctaaatggtcttaatgcttatggatgtctgatggtatctgcccattgaaggacttagtatttattctagtcttcacaat--------------------------------------------------------ctagctatgtttgtaacat-----------------------------------tctctcctcagatatt-taatcagactgattgggttgtgttccctgagctcgtgaccactgcaactatctcaacactagaggatgctctaagcccaggtttgccatgtgtagcatgaggatgccaaggatgtggtgactctggcagggatgaatctgaggaaggccc----aaaaaaggtacccaggctgtgagggaaagctaaccagggACCAGAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19126669 414 + 50472720 aaaacagctattttgaattccttgtgtaaaagatagcacgtctctatcactgaagggtctgttattggtgtcctattttgtcattttgttgagattacatttttct-aatggtcttgatgcttatggatgtgtgatgatatctgcccactgagggacttggtatttatttcagtcttcacgat--------------------------------------------------------------------------c----------------tggctgtgtttgtaacatttctctcctcacacattttaaccagaataatggagttatgcttactgagctcgtgaccactgtagctatctcaacaatagaggatgctctaagccca-gtttgccgtgagtctCATGAGGACACCAAAGGTGTGGTGACTCTGGCCTGGATGAATTTGAGAAAGACCC----AAGAAAGGTACCCAGGCTGTGAAGGAAAGCTAACCAGGGAGTAGAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2479917 411 + 13128814 aaaCcagctatttcaaattccttgtgtaaaagatatcatgtctctatcactatagggtctgttattggtgtcctattttgtcattttgttgaggttacattttcct-aatggtcttgatgcttatggatgtgtgatgatatctgcccactgagggacttggtatttatttcagtcttcacgat--------------------------------------------------------------------------c----------------tggctgtgtttgtaacatttctctcctcaaacattttaaccagactaatggagttatgctccctgagctcatgaccagtatagctgtctcaacgctagaggatgctctaagcccaggtttgctatgagtctcatgaggacaccaagggtgtggtggctctggcctggatgagtttgagaaagaccc----atgagaggtagccaggctgtgagggaaagctaaccagggACT---- i saiBol1.JH378168 I 4323 C 0 s cebCap1.NW_016107322v1 7014760 414 - 14377064 aaaaca-ctattttgaattccttgtttaaaagatagcacatctctataactgtaggatctgttattggtgtcctattttgtcattttgttgaggttacattttcct-aatggtcttaatgtttatggatgtgtgatgatatctgcccactcagggacttggtatttatttcagtcttcatgat--------------------------------------------------------------------------c----------------tggctgtgtttgtaacatttctctcctcagatattttagccagactaatggagttatgctccctgagctcgtgaccactgtagctatctcaacactagaggatgctctaagcccaggtttgctataagtctcatgaggacaccaagggtgtggtgactctggcctggatgaatttgagaaagaccc----aagaaaggtacccaggctgtgagggaaagctaaccagggACTAGAA i cebCap1.NW_016107322v1 C 0 I 31 s aotNan1.NW_018487195v1 6062821 415 + 9889416 aaaacagctattttgaattccttgtataaaaggtatcacgtctctatcattgtagagtctgttattggtgtcctattttgtcattttgttgaggttacattttcct-aatggtcttgatgcttatggatgtgtgatgatatctgcccactgagggacttggtatttatttcagtcttcactat--------------------------------------------------------------------------c----------------tggctgtgtttgtaacatttctctcctcagacattttaaccagactaatggagttatgctccctgagctcatgaccactgtagctatctcaacactagaggatgctctaagcccaggtttgctatgagtctcatgaggacaccaagggtgtggtgactctggcctggatgaatttgagaaagaccc----aagaaaggtacccaggttgtgagggaaagctaaccagggACTAGAA i aotNan1.NW_018487195v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=25627.000000 s hg38.chr21_GL383578v2_alt 22558 9 + 63917 GACGAAGA----------------------G s panTro5.chr21 859361 9 + 33445071 gacAAAGA----------------------C i panTro5.chr21 C 0 C 0 s panPan2.chr21 14544735 9 + 46275980 gacAAAGA----------------------C i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 456808 9 - 13858734 GACGAAGA----------------------C i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653366 31 - 185818997 GCCAAAGACACTCTCACTGGCCTAGATAAGC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461142 31 - 192294377 GCCAAAGACTGTCTCACTGGCCTAGATAAGC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5905794 31 + 9440265 GCCAAAGACTGTCTCACTGGCCTAGATAAGC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5645612 31 + 21915920 GCCAAAGACTGTCTCACTGGCCTAGATAAGC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290047 31 - 90373283 GCCAAAGACTGTCTCACTGGCCTAGATAAGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618227 31 + 1337817 GCCAAAGACTGTCTCACTGGCCTAGATAAGC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596598 31 - 3237654 GCCAAAGACTGTCTCACTGGCCTAGATAAGC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127083 9 + 50472720 ACTGGAGAC---------------------- i calJac3.chr21 C 0 I 22 s saiBol1.JH378168 2480328 9 + 13128814 ATTGAAGAA---------------------- i saiBol1.JH378168 C 0 I 22 s aotNan1.NW_018487195v1 6063236 9 + 9889416 ACTGGAGAC---------------------- i aotNan1.NW_018487195v1 C 0 I 22 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e cebCap1.NW_016107322v1 7015174 31 - 14377064 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1159024.000000 s hg38.chr21_GL383578v2_alt 22567 137 + 63917 ATGCCTTCCAGCAGATCCCTACACACGCAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCCACATGCAGGATAGGTTTTTTTACTGTAGCGAGAGGAGCTGGAGCTGAGACTGGGTCCCC s panTro5.chr21 859370 136 + 33445071 ATGCCTTCCAGCAGATCCCTACACACGCAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGGCTTCCAGCAGATCCACATGCAGGATAGG-TTTTTTACTGTAGCGAGAGGAGCTGGAGCTGAGACTGGGTCCCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14544744 136 + 46275980 ATGCCTTCCAGCAGATCCCTACACACGCAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGGCTTCCAGCAGATCCACATGCAGGATAGG-TTTTTTACTGTAGCGAGAGGAGCTGGAGCTGAGACTGGGTCCCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 456817 136 - 13858734 ATGCCTTCCAGCAGATCCCTACACACGCAGGATAGGTTTTTGACTGTAGCCTAAATAAGCTTGCCTTCCAGCAGATCCACATGCAGGATAGG-TTTTTTACTGTAGCGAGAGGAGCTGGAGCTGAGACTGGGTCCCC i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653397 136 - 185818997 ATGCCTTCCAGCAGATCCCTACACACACAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGG-TTTTTGACTGCAGCGAGAGGAGCTAGAGCTGAGAGTGGGTCCCC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461173 136 - 192294377 ATGCCTTCCAGCAGATCCCTACACACACAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGG-TTTTTGACTGCAGCGAGAGGAGCTAGAGCTGAGAGTGGGTCCCC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5905825 136 + 9440265 ATGCCTTCCAGCAGATCCCTACACACACAAGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGG-TTTTTGACTGCAGCGAGAGGAGCTAGAGCTGAGAGTGGGTCCCC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5645643 136 + 21915920 ATGCCTTCCAGCAGATCCCTACACACACAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGG-TTTTTGACTGCAGCGAGAGGAGCTAGAGCTGAGAGTGGGTCCCC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290078 136 - 90373283 ATGCCTTCCAGCAGATCCCTACACACACAGGATAGGTTTTTGAATGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGG-TTTTTGACTGCAGCGAGAGGAGCTAGAGCTGAGAGTGGGTCCCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618258 136 + 1337817 ATGCCTTCCAGCAGATCCCTACACACACAGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGA-TTTTTGACTGCAGCGAGAGGAGCTAGAGCTGAGAGTGGGTCCCC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596629 136 - 3237654 ATGCCTTCCAGCAGATCCCTACATACACGGGATAGGTTTTTGACTGTAGCCTAAATAAGCATGCCTTCCAGCAGATCTACACACAGGATAGG-TTTTTGACTATAGGGAGAGGAGCTGGAGCTGAGAGTGGGTCCCC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127114 134 + 50472720 ATGCCTTCCAGCAGATCCCAACACAAGCAGGATAGATTTTTGACTGTAGTCTAAATAAGCATGCCTTCTAGCAGATCCACATGCAGAATAGG-TTTCTGACT--AGCAAGAGGAGGTGGAGCTGAGACTGGGTCCCC i calJac3.chr21 I 22 C 0 s saiBol1.JH378168 2480359 134 + 13128814 ATGCCTTCCAGTAGATCCCAACATAAGCAGGATAGATTTTTGACTGTAGTCTAAATAAGCATGCCTTCTAGCAGATTCACATGCAGAATAGG-TTTCTGACT--AGCAAGAGGAACTGGAGCTGAGATTGGGTCCCc i saiBol1.JH378168 I 22 I 132 s cebCap1.NW_016107322v1 7015205 133 - 14377064 ATGCCTTCCAGCAGATCCCAACCCAAGCAGGATAGATTTTTGACTGTAGTCTAAATAAGCATG-CTTCTAGCAGATTCACATGCAGAATAGG-TTTTTGACT--AGCAAGAGGAGCTGGAGCTGAGACTGGGTCCCC i cebCap1.NW_016107322v1 I 31 C 0 s aotNan1.NW_018487195v1 6063267 134 + 9889416 ATGCCTTCCAGCAGATCCCAACACAAGCAGAATAGATTTTTGACTGTAGTCTAAATAAGCCTGCCTTCTAGCAGATCCACATGCAGAATAGG-TTTCTGACT--AGCAAGAGGAGCTGGAGGGGAGACTGGGTCCCC i aotNan1.NW_018487195v1 I 22 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=514559.000000 s hg38.chr21_GL383578v2_alt 22704 62 + 63917 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT s panTro5.chr21 859506 62 + 33445071 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14544880 62 + 46275980 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 456953 62 - 13858734 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653533 62 - 185818997 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461309 62 - 192294377 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5905961 62 + 9440265 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5645779 62 + 21915920 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290214 62 - 90373283 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCAttttgttatctcagagaggcgtgtct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618394 62 + 1337817 TTGGGATCTCCTGTGGAAGAGTGGGAGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596765 62 - 3237654 TTGGGATCTCCTGTGGAAGGGTGGGAGGTGAGCTCATTTTGTTATCTCAGACAGGCATGTCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127248 62 + 50472720 TTGGCATCTCCTGTGGAAGGGTGGGCGGTGAACTCATTTTGTTATCTCAGAGAGGCATGTCT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015338 62 - 14377064 TTGGCATCTCCTGTGGAAGGGTGGGTGGTGAGCTCATTTTGTTATCTCAGAGAGGCATGTCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063401 62 + 9889416 TTGGCATCTCCTGTGGAAGGGTGGGTGGTGAGCTCATTTTGTTATCTCAGAGAGACATGTCT i aotNan1.NW_018487195v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e dasNov3.JH568778 624288 0 - 6883506 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=23618.000000 s hg38.chr21_GL383578v2_alt 22766 3 + 63917 TGA s panTro5.chr21 859568 3 + 33445071 TGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14544942 3 + 46275980 TGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457015 3 - 13858734 TGA i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653595 3 - 185818997 TGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461371 3 - 192294377 TGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906023 3 + 9440265 TGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5645841 3 + 21915920 TGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290276 3 - 90373283 tga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618456 3 + 1337817 TGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596827 3 - 3237654 TTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127310 3 + 50472720 TGA i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015400 3 - 14377064 TGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063463 3 + 9889416 TGA i aotNan1.NW_018487195v1 C 0 C 0 s dasNov3.JH568778 624288 3 - 6883506 aga i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e canFam3.chr31 11429244 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=748633.000000 s hg38.chr21_GL383578v2_alt 22769 92 + 63917 ATTTTTGTTAATTGgcttcctttttactctctctagccttttcttgtagaaatcatactgtatgaatgttgggctcttgggaattt---ttct------ct---- s panTro5.chr21 859571 92 + 33445071 ATTTTTGTTAATTGgcttcctttttactctctgtagccttttcttgtggaaatcatactgtatgaatgttgggctcttgggaattt---ttct------ct---- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14544945 92 + 46275980 ATTTTTGTTAATTGgcttcctttttactctctctagtcttttcttgtggaaatcatactgtatgaatgttgggctcttgggaattt---ttct------ct---- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457018 92 - 13858734 ATTTTTGTTAATTGgcttcctttttactctctctagccttttcttgtggaaatcatactgtaagaatgttgggcacttgggaattt---ttct------ct---- i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653598 90 - 185818997 TTTTTTGTTAATTGGCTTCATTTTTACTCTCTCTAGCCTTTTCTTGTGGAAACCATACTGTATGAATGTTGGGTTCCTGGGAATTT---TTCT------------ i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461374 90 - 192294377 ttttttgttaattggcttcatttttactctctctagccttttcttgtggaaaccatactgtatgaatgttgggttcctgggaattt---ttct------------ i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906026 90 + 9440265 TTTTTTGTTAATTGGCTTCATTTTTACTCTCTCTAGCCTTTTCTTGTGGAAACCATACTGTATGAATGTTGGGTTCCTGGGAATTT---TTCT------------ i macNem1.NW_012019910v1 C 0 I 210 s cerAty1.NW_012002954v1 5645844 92 + 21915920 TTTTTTGTTAATTGGCTTCATTTTTACTCTCGCTAGCCTTTTCTTGTGGAAACCATACTGTATGAATGTTGGGTTCCTGGGAATTT---TTCTCT---------- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290279 92 - 90373283 ttttttgttaattggcttcctttttactctctctagccttttcttgtggaaaccatactgtatgaatgttgggttcctgggaattt---ttct--ct-------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618459 92 + 1337817 TTTTTTGTTAATTGGCTTCATTTTTACTCTCTCTAGCCTTTTCTTGTGGAAACCATACTGTATGAATGTTGGGTTCCTGGGAATTT---TTCT--CT-------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596830 92 - 3237654 TTTTTTGTTAATTGGCTTCCTTTTTACTCTCTCTAGCCTTTTCTTGTGGAAACCATACTGTATGAATGTTGGGCTCCTGGGAAGTT---TTCT----CT------ i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127313 88 + 50472720 ttttttgttaattgacttcctttttactctc--tacccttttcttgtggaaaccatactatatgaatgttgggctcttgggaattt---ttct------------ i calJac3.chr21 C 0 I 2 s cebCap1.NW_016107322v1 7015403 88 - 14377064 TTTTTTGTTAATTGACTTCCTTTTTACtctc--tacccttttcttgtggaaaccatactgtatgaatgttgggctcttgggaattt---ttct------------ i cebCap1.NW_016107322v1 C 0 I 2 s aotNan1.NW_018487195v1 6063466 88 + 9889416 TTTTTTGTTAATTGACTTCCTTTTTActctc--tacctttttcttgtggaaaccatacgatatgaatgttgggctcttgggaattt---ttca------------ i aotNan1.NW_018487195v1 C 0 I 2 s canFam3.chr31 11429244 93 + 39895921 ATTTTTATTCAATGGTTtcctttttattttctctagccttgtcttatggaaaccataccagatgaatgctgccctcttgggaatttcccctct------------ i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624291 94 - 6883506 ttttttgctcacatggtttgtttttattctcttcaggcttttcttctggaaacggtattagataaatgttagccccttgggaattt---tctt--------ccct i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1429938.000000 s hg38.chr21_GL383578v2_alt 22861 184 + 63917 gtctcttgatggt--ttattttctgttttgaaactgtatttattttctatgtgttctgggaaaattctcccatctt-ctcttccaactcactgattttcttttcagcagtggatatttggactata-tattaag----------ttttttttttaattttagcaaatatactttGCTCTTTTTT--CATAACCTTCTATG s panTro5.chr21 859663 185 + 33445071 gtctcttgatggt--ttgttttctgttttgaaactgtatttattttctatgtgttctgggaaaattctcccatctt-ctcttccaactcactgattttcttttcagcagtggatatttggactata-tattaag---------tttttttttttaatTTTAGCAAATATACTTTGCTCTTTTTT--CATAATCTTCTATC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545037 183 + 46275980 gtctcttgatggt--ttgttttctgttttgaaactgtatttattttctatgtgttctgggaaaattctcccatctt-ctcttccaactcactgattttcttttcagcagtggatatttggactata-tattaag-----------tttttttttaattttagcaaatatactttgctctttttt--cataatcttctatc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457110 184 - 13858734 gtctcttgatggt--ttgttttctgttttgaaactgtatttattttctatgtgttctgggaaaattctcccatctt-ctcttccaactcactgattttcttttcagcagtggatatttggactata-tattaag----------ttttttttttaatTTTGGCAAATACACTTTGCTCTTTTTT--CATAATCTTCTATC i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653688 190 - 185818997 GTCTCTTGGTGGT--TTGTTTTCTG-TTTGAAAC--TATTTATTTGCTATGTGTTC-GGCAAAATTCTCCCATCTT-CTCTTCCAACTCACTGATTTTCTTTTCAGCTGTGGATATTTTGACTATA-TATTAAGttgtttttttttttttttttgattttAGCAAATATACTTTGCTCTTTTTT--CATAATCTCCTATC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461464 186 - 192294377 gtctcttggtggt--ttgttttctg-tttgaaac--tatttatttgctatgtgttc-ggcaaaattctcccatctt-ctcttccaactcactgattttcttttcagctgtggatattttgactata-tattaag----ttgtttttttttttttgattttagcaaatatactttgctctttttt--cataatctcctatc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906326 187 + 9440265 GTCTCTTGGTGGT--TTGTTTTCTG-TTTGAAAC--TATTTATTTGCTATGTGTTC-GGCAAAATTCTCCCATCTT-CTCTTCCAACTCACTGATTTTCTTTTCAGCTGTGGATATTTTGACTATA-TATTAAG---tttttttttttttttttgattttAGCAAATATACTTTGCTCTTTTTT--CATAATCTCCTATC i macNem1.NW_012019910v1 I 210 C 0 s cerAty1.NW_012002954v1 5645936 187 + 21915920 GTCTCTTGGTGGT--TTGTTTTCTG-TTTGAAACTGTATTTATTTGCTATGTGTTC-GGCAAAATTCTCCCATCTT-CTCTTCCAACTCACTGATTTTCTTTTCAGCTGTGGATATTTTGACTACA-TATTAAG-----TTGTTTTATTTTTTTGATTTTAGCAAATATACTTTGCTCTTTTTT--CATAATCTCCTATC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290371 182 - 90373283 gtctcttggtggt--ttgttttctg-tttgaaactgtatttatttgctatgtgttc-tgcaaaattctcccatctt-ctcttccagctcactgattttcttttcagctgtggatattttgactata-tattaag--------t--ttttttttttaatttagcaaatatagtttgctctttttt--cataatctcctatc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618551 184 + 1337817 GTCTCTTGGTGGT--TTGTTTTCTG-TTTGAAACTGTATTTATTTGCTATGTGTTC-GGCAAAATTCTCCCATCTT-CTCTTCCAACTCGCTGATTTTCTTTTCAGCTGTGGATATTTTGACTACA-TATTAAG--------TTGTTTTTTTTTTATTTTAGCAAATATACTTTGCTCTTTTTT--CATAATCTCCTATC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 596922 191 - 3237654 GTCTCTTGGTGGT--TTGTTTTCTGTTTTGAAACTGTAGTTATTTGCTATGTGTTC-TGCAAAATTCTCCCATCTC-CTCTTCCAACTCACTGATTTTCTTTTCAGCTGTGGATATTTGGACTATA-TATTAAG--TTTTGTTGTTTTTTTTTTAATTTTAGCAAATATACTTTGCTATTTTTC--CATAATCTCTTATC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127403 185 + 50472720 gtctcttgatggt--tcattttctgttttgaaac--tatttgtttgttatgtgttctggaaaaattctcccatctttctcttccaactcgctgattttcttttcagctatggatattagcactatattattaag-------ggtttttttaat---ttttagcaagtatattttgctcttttttt-cataatcttctatc i calJac3.chr21 I 2 C 0 s cebCap1.NW_016107322v1 7015493 181 - 14377064 gtctcttgatggt--tcgttttctgttttgaaac--tatttatttgttatatgttctggaaatattctcccatcttcctcttccaactcactgattttcttttcagctatggatat------tatattattaag-------gattttttttttt-attttagcaagtatattttgctcttttttt-catagtcttctatc i cebCap1.NW_016107322v1 I 2 C 0 s aotNan1.NW_018487195v1 6063556 189 + 9889416 gtctcttgatggt--tcgttttctgttttgaaac--tatttatttgttatgtgttctggaaaaattctcccatcttcctcttccaactcactgattttcttttcagctatgGATATTAGGACTATATTATTAAG-------GGTTTTTCTTTTTAATTTTAGCAAGTATATTTTGCTCTTTTTTTCCATAATCTTCTATC i aotNan1.NW_018487195v1 I 2 C 0 s canFam3.chr31 11429337 186 + 39895921 gtctctaaatgatgattcttttctatttttaaactttatgaatttgtgatgtgttctgagaaaattcttccatttt-ctcttccaactcactgatttgcactgtggctatggctattcagtctgca-tgtcaag----------tttgttgtttaatttaaacaaatatatattacttcttttt--cataatttcctatc i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 624385 184 - 6883506 gtctcttgatg-t--ttcttttctatttttaaactttatccatttgtgatgtgttctgggaaaactcttccatctt-atcttccagctcactgatttgttcttcagctatggcttttcaggacata-tataaaa----gcttgtttgtgtttttagtttcaacaaatgcatataacttctttct--cata-----ctaga i dasNov3.JH568778 C 0 I 1 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16824304 4944 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=482918.000000 s hg38.chr21_GL383578v2_alt 23045 45 + 63917 ATACTTCCTACATAAAATATC-GCCTGCATCACTTTGAGGATAATT s panTro5.chr21 859848 46 + 33445071 ATACTTCCTACATAAAATATCTTCCTGCATCACTTTGAGGATAATT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545220 46 + 46275980 atacttcctacataaaatatcttcctgcatcactttgaggataATT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457294 46 - 13858734 ATACTTCCTACATAAAATATCAGCCTGCATCACGTTGAGGATAATT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653878 46 - 185818997 ATACTTCCTACATAAAATATCTGCCTGCATCACCTTGAGGATAATT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461650 46 - 192294377 atacttcctacataaaatatctgcctgcatcaccttgaggataatt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906513 46 + 9440265 ATACTTCCTACATAAAATATCTGCCTGCATCACCTTGAGGATAATT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646123 46 + 21915920 ATACTTCCTACATAAAATATCTGCCTGCATCACCTTGAGGATAATT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290553 46 - 90373283 atacttcctacataaaatatctgcctgcatcactttgaggataatt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618735 46 + 1337817 ATACTTCCTACATAAAATATCTGCCTGCATCACCTTGAGGATAATT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597113 46 - 3237654 ATACTTCCTACATAAAATATCTGCCTGCATCACTTTGAGGATAATT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127588 46 + 50472720 atacttcctagataaaatatctgcctgcatcactttgaggataAAC i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015674 46 - 14377064 atacttcctaggtaaaatatctgcctgcatcactttgaggataATC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063745 46 + 9889416 ATACTTCCTAGATAAAATATCTGCCTGCATCACTTTGAGGATAATC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16829248 46 + 47401472 ATACTTCATAGATAAAATATCTGTCTGCATCACTTTGAGGATAATT i micMur3.chr31 I 4944 I 117 s canFam3.chr31 11429524 46 + 39895921 ttgcttcctagataaaatacatgtgtgcatcactttaaggacaatt i canFam3.chr31 I 1 I 16 s dasNov3.JH568778 624570 46 - 6883506 atgctttctagatgcaatacctaaatgcatctctttgagtataatt i dasNov3.JH568778 I 1 I 12 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=148889.000000 s hg38.chr21_GL383578v2_alt 23090 17 + 63917 ATCTTTTCTGGTTACTT s panTro5.chr21 859894 17 + 33445071 ATCTTTTCTGGTTACTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545266 17 + 46275980 ATCTTTTCTGGTTACTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457340 17 - 13858734 ATCTTTTCTGGTTACTT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653924 17 - 185818997 ATCTTTTCTGGTTACTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461696 17 - 192294377 atcttttctggttactg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906559 17 + 9440265 ATCTTTTCTGGTTACTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646169 17 + 21915920 ATCTTTTCTGGTTACTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290599 17 - 90373283 atcatttctggttactg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618781 17 + 1337817 ATCTTTTCTGGTTACTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597159 17 - 3237654 ATCTTTTCTGGTTACTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127634 17 + 50472720 ATCTTTCCTGGTTACTT i calJac3.chr21 C 0 I 18 s cebCap1.NW_016107322v1 7015720 17 - 14377064 ATCTTTCCCGGTTACTT i cebCap1.NW_016107322v1 C 0 I 34 s aotNan1.NW_018487195v1 6063791 17 + 9889416 ATCTTTCCCTGTTACTT i aotNan1.NW_018487195v1 C 0 I 18 s canFam3.chr31 11429586 17 + 39895921 atcttttctgattgcat i canFam3.chr31 I 16 C 0 s dasNov3.JH568778 624628 17 - 6883506 atatgttctggttgctt i dasNov3.JH568778 I 12 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829294 117 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=87962.000000 s hg38.chr21_GL383578v2_alt 23107 20 + 63917 AAC----------------TATCAATACCTTTTGTG s panTro5.chr21 859911 20 + 33445071 AAC----------------TATCAATACCTTTTGTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545283 20 + 46275980 AAC----------------TATCAATACCTTTTGTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457357 20 - 13858734 AAC----------------TATCAATACCTTTTGTG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653941 20 - 185818997 AAG----------------TATCAATTCCTTTtgtg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461713 20 - 192294377 aag----------------tatcaattccttttgtg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906576 16 + 9440265 AAG----------------TATCAATTCCTTT---- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646186 20 + 21915920 AAG----------------TATCAATTCCTTTtgtg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290616 20 - 90373283 aag----------------tatcaattccttttgtg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618798 20 + 1337817 AAG----------------TATCAATTCCTTTtgtg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597176 20 - 3237654 AAG----------------TATCAATTCCTTTtgtg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127669 19 + 50472720 AAG----------------TATTCATTGCTCTTAT- i calJac3.chr21 I 18 C 0 s aotNan1.NW_018487195v1 6063826 19 + 9889416 AAG----------------TATCCATTCCTTTTAT- i aotNan1.NW_018487195v1 I 18 C 0 s canFam3.chr31 11429603 36 + 39895921 aagtagttatttttacttctatcaattccttcttca i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624645 6 - 6883506 aaa----------------tag-------------- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829294 117 + 47401472 I e cebCap1.NW_016107322v1 7015737 34 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1232.000000 s hg38.chr21_GL383578v2_alt 23127 11 + 63917 TG-----------TTTTT------TTTT s panTro5.chr21 859931 10 + 33445071 TG------------TTTT------TTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545303 10 + 46275980 TG------------TTTT------TTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457377 16 - 13858734 TG------GTTTTTTTTT------TTTT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653961 16 - 185818997 tg------tgtgtgtgtg------tTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461733 16 - 192294377 tg------tgtgtgtgtg------tttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906592 16 + 9440265 TG------TGTGTGTGTG------TTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646206 19 + 21915920 tg------tgtgtgtgtg---tTTTTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290636 13 - 90373283 ta---------gtttttt------tttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618818 22 + 1337817 tgtgtgtgtgtgtgtgtg------tTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597196 22 - 3237654 tg------tgtgtgtgtgtTTTTTTTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127688 8 + 50472720 --------------TTTA------TTTT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015771 11 - 14377064 -----------TATTTTA------TTTT i cebCap1.NW_016107322v1 I 34 C 0 s aotNan1.NW_018487195v1 6063845 8 + 9889416 --------------TTTA------TTTT i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11429639 7 + 39895921 ---------------ttt------tttt i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624651 7 - 6883506 ---------------tta------tttt i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829294 117 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314373 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=87390.000000 s hg38.chr21_GL383578v2_alt 23138 8 + 63917 TTCTCAGG s panTro5.chr21 859941 8 + 33445071 TTCTCATG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545313 8 + 46275980 TTCTCATG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457393 8 - 13858734 TTCTCATG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653977 8 - 185818997 TTCTCATG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461749 8 - 192294377 ttctcatg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906608 8 + 9440265 TTCTCATG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646225 8 + 21915920 TTCTCATG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290649 8 - 90373283 ttctcatG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618840 8 + 1337817 TTCTCATG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597218 8 - 3237654 TTCTCATG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127696 8 + 50472720 TTCTCATG i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015782 8 - 14377064 TTCTCATG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063853 8 + 9889416 TTCTCATG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18314373 8 - 38779656 TTCCCATG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429646 8 + 39895921 ccctcatg i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624658 8 - 6883506 tactcagg i dasNov3.JH568778 C 0 I 70 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829294 117 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=305256.000000 s hg38.chr21_GL383578v2_alt 23146 36 + 63917 GTGTTGCTTTTCAT--CAAAACTCATCTATG-AACTGAG s panTro5.chr21 859949 36 + 33445071 GTGTTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545321 36 + 46275980 GTGTTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457401 36 - 13858734 GTGTTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152653985 36 - 185818997 GCATTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461757 36 - 192294377 gcattggttttcat--caaaACTCATCTATG-AACTGAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906616 36 + 9440265 GCATTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646233 36 + 21915920 GCATTGGTTTTCAG--CAAAACTCATCTATG-AACTGAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290657 36 - 90373283 GCATTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618848 36 + 1337817 GCATTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597226 36 - 3237654 GCCTTGGTTTTCAT--CAAAACTCATCTATG-AACTGAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127704 38 + 50472720 GAGTGGGTTTTCATAAAAAAAATCATCTATG-CACTGAG i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015790 36 - 14377064 GTGTTGGTTTTCAT--AAAAACTCATCTGTG-CACTGAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063861 36 + 9889416 GTGTTGGTTTTCAT--AAAACCTTGTCTATG-CACTGAG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18314381 36 - 38779656 GTGTTGGTTTTCAC--TGAAACTCACTTATG-TAGTTAA i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11429654 37 + 39895921 atgttggttttcat--caaaACTCATCTAGATAGTTGAG i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829294 117 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e dasNov3.JH568778 624666 70 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=433240.000000 s hg38.chr21_GL383578v2_alt 23182 45 + 63917 AATTTCTGCTGAACTGTCAGCAGCCAG-----------------------CCTCAGAGGAAAGGTGGA s panTro5.chr21 859985 45 + 33445071 AATTTCTGCTGAACTGTCAGCAGCCAG-----------------------CCTCAGAGGAAAGGTGGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545357 45 + 46275980 AATTTCTGCTGAACTGTCAGCAGCCAG-----------------------CCTCAGAGGAAAGGTGGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457437 45 - 13858734 AATTTCTGCTGAACTGTCAGCAGCCAG-----------------------CCTCAGAGGAAAGGTGGA i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654021 68 - 185818997 AATTTCAGCTGAACTGTCAGCAGCCAGCCTCAGAGGAAAGGTGCAGCCAACCTCAGAGGAAAGGTGGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461793 68 - 192294377 AATTTCAGCTGAACTGTCAGCAGCCAGCCTCAGAGGAAAGGTGCAGCCAACCTCAGAGGAAAGGTGGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906652 68 + 9440265 AATTTCAGCTGAACTGTCAGCAGCCAGCCTCAGAGGAAAGGTGCAGTCAACCTCAGAGGAAAGGTGGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646269 68 + 21915920 AATTTCAGCTGAACTGTCAGCAGCCAGCCTCAGAGAAAAGGTGCAGCCAACCTCAGAGGAAAGGTGGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290693 68 - 90373283 AATTTCAGCTGAACTGTCAGCAGCCAGCCTCAGAGGAAAGGTGCAGCCAACCTCAGAGGAAAGGTGGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618884 68 + 1337817 AATTTCAGCTGAACTGTCAGCAGCCAGCCTCAGAGGAAAGGTGCAGCCAACCTCAGAGGAAAGGTGGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597262 68 - 3237654 AATTTCTACTGAACTGTCAGCAGCCAGCCTCAGAGGAAAGGTGCAGCCAACCTCAGAGGAAAGGTGGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127742 45 + 50472720 AATTTCTGCTCAACTGTCAGCAGCTGG-----------------------CCTTAGAGGAAAGGTGAA i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015826 45 - 14377064 AATTTCTGCTCAACTGTCAGCAGCTGG-----------------------CCTTAGAGGAAAGGTGGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063897 45 + 9889416 AATTTCTGCTCAACTGGCAGCAGCCGG-----------------------CCTTAGAGGAAAGGTGGA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16829411 45 + 47401472 AATTTCTGCTAAACTGTTAGTAGCCAG-----------------------CTCCAGAGGAAGGATGGA i micMur3.chr31 I 117 C 0 s otoGar3.GL873528 18314418 45 - 38779656 AATTTCTGCAAAACTGTTAGTAGCCAC-----------------------ATTCAGAATAAGGGTGGA i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11429691 39 + 39895921 AATCCC-----AACTGTTAGTAGCCAG-----------------------CCTC-GAGGAAGAGGGGA i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e saiBol1.JH378168 2480493 132 + 13128814 I e dasNov3.JH568778 624666 70 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=753721.000000 s hg38.chr21_GL383578v2_alt 23227 69 + 63917 ATCACCTGCCAAGGGCTTAT-ACTTCATATTGTTTTTAGTTA---------GAGTAAAGGGATGGGAGTAATGTCTCAG s panTro5.chr21 860030 69 + 33445071 ATCACCTGCCAAGGGCTTAT-ACTTCATATTGTTTTTAGTTA---------GAGTAAAGGGATGGGAGTAATGTCTCAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545402 69 + 46275980 ATCACCTGCCAAGGGCTTAT-ACTTCATATTGTTTTTAGTTA---------GAGTAAAGGGATGGGAGTAATGTCTCAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457482 69 - 13858734 ATCACCTGCCAAGGGCTTAT-ACTTCATATTGTTTTTAGTTA---------GAGTAAAGGGATGGGAGTAATGTCTCAG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654089 69 - 185818997 ATCACCTGCCGAGGGCTTAT-ACTTCATATGGTTTTCAGTTA---------GAGTAAAGGGATGGGAGTAATATCTCAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461861 69 - 192294377 ATCACCTGCCGAGGGCTTAT-ACTTCATATGGTTTTCAGTTA---------GAGTAAAGGGATGGGAGTAATATCTCAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906720 69 + 9440265 ATCACCTGCCGAGGGCTTAT-ACTTCATATGGTTTTCAGTTA---------GAGTAAAGGGATGGGAGTAATATCTCAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646337 69 + 21915920 ATCACCTGCCGAGGGCTTAT-ACTTCATATGGTTTTCAGTTA---------GAGTAAAGGGAGGGGAGTAATATCTCAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290761 69 - 90373283 ACCACCTGCCGAGGGCTTAT-ACTTCATATGGTTTTCAGTTA---------GAGTAAAGGGATGGGAGTAATGTCTCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 618952 69 + 1337817 ATCACCTGCCGAGGGCTTAT-ACTTCATATGGTTTTCAGTTA---------GAGTAAAGGGATGGGAGTAATATCTCAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597330 69 - 3237654 ATCACCTGCCAAGGGCTTAT-ACTTCATATGGTTTTCATTTA---------GAGTAAAGGGATGGGAGTAATGTCTCAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127787 68 + 50472720 ATCACCTGCCAATGGCTTAT-ACTTTAAATTGTTTTTAGTTA---------GAGTGAAA-GATGGGAGTAAAGTCTCAG i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015871 78 - 14377064 ATCACCTGCCAAGGGCTTAT-ACTTCACATTGTTTTTAGTTAAAAGGATGGGAGTAAAAGGATGGGAGTACTGTCTCAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6063942 69 + 9889416 ATCACCTGCCAAGGGCTTAT-ACTTCACATTGTTTTTAGTTA---------AAGTAAAAGGATGGGAGTAATGTCTCAG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16829456 69 + 47401472 ATAACCTGCCAAGAGCTTGT-ACTTCACATTGTTTTCAGTAA---------GTCTAAAGGTATGAGAATAATGTCTCAG i micMur3.chr31 C 0 I 2214 s otoGar3.GL873528 18314463 69 - 38779656 ATCACCTGCCAAGGGCTTGC-ACTTCACATTGTGTTCAGTTA---------AAGTGAAGGGATGAAAGTAATGTCTCAG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429730 69 + 39895921 ATCATCTTCCGAGGACTTATAACTTCACCT-GTCTTCAACTA---------AAGTGAAGAGATGGGAATAATGTCCCAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624736 66 - 6883506 ATTGTCTGCCAAGGGC-TAT-ACTCCATCCAGTTATAATTTA-----------GTGAGGGGATGGGAATGATGGCTCAG i dasNov3.JH568778 I 70 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=104541.000000 s hg38.chr21_GL383578v2_alt 23296 10 + 63917 CAACTGGTTT s panTro5.chr21 860099 10 + 33445071 CAACTTGTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545471 10 + 46275980 CAACTTGTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457551 10 - 13858734 CAACTGGTTT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654158 10 - 185818997 CAACTGGTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461930 10 - 192294377 CAACTGGTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906789 10 + 9440265 CAACTGGTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646406 10 + 21915920 CAACTGGTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290830 10 - 90373283 CAACTGGTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619021 10 + 1337817 CAACTGGTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597399 10 - 3237654 CAACTAGTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127855 10 + 50472720 CAACTGGTTT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015949 10 - 14377064 CAACTGGTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064011 10 + 9889416 CAACTGGTTT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18314532 10 - 38779656 AAATACATTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429799 10 + 39895921 CAACTGGTCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624802 10 - 6883506 CAACTGGTTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=2548.000000 s hg38.chr21_GL383578v2_alt 23306 1 + 63917 T s panTro5.chr21 860109 1 + 33445071 T i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545481 1 + 46275980 T i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457561 1 - 13858734 T i gorGor5.CYUI01015003v1 C 0 C 0 s calJac3.chr21 19127865 1 + 50472720 T i calJac3.chr21 C 0 C 0 s otoGar3.GL873528 18314542 1 - 38779656 T i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429809 1 + 39895921 T i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 624812 1 - 6883506 T i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064021 0 + 9889416 C e cebCap1.NW_016107322v1 7015959 0 - 14377064 C e saiBol1.JH378168 2480493 132 + 13128814 I e chlSab2.chr2 12290840 0 - 90373283 C e colAng1.NW_012116933v1 597409 0 - 3237654 C e manLeu1.NW_012107264v1 619031 0 + 1337817 C e cerAty1.NW_012002954v1 5646416 0 + 21915920 C e macNem1.NW_012019910v1 5906799 0 + 9440265 C e rheMac8.chr3 152654168 0 - 185818997 C e macFas5.chr3 159461940 0 - 192294377 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=13376.000000 s hg38.chr21_GL383578v2_alt 23307 13 + 63917 CTGACTCTAATTT s panTro5.chr21 860110 13 + 33445071 CTGACTCTAATTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545482 13 + 46275980 CTGACTCTAATTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457562 13 - 13858734 CTGACTCTAATTT i gorGor5.CYUI01015003v1 C 0 C 0 s calJac3.chr21 19127866 13 + 50472720 CTGTCTCTAACTT i calJac3.chr21 C 0 C 0 s dasNov3.JH568778 624813 13 - 6883506 CTGGACCAAATTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064021 0 + 9889416 C e cebCap1.NW_016107322v1 7015959 0 - 14377064 C e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314543 0 - 38779656 C e canFam3.chr31 11429810 0 + 39895921 C e chlSab2.chr2 12290840 0 - 90373283 C e colAng1.NW_012116933v1 597409 0 - 3237654 C e manLeu1.NW_012107264v1 619031 0 + 1337817 C e cerAty1.NW_012002954v1 5646416 0 + 21915920 C e macNem1.NW_012019910v1 5906799 0 + 9440265 C e rheMac8.chr3 152654168 0 - 185818997 C e macFas5.chr3 159461940 0 - 192294377 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=24108.000000 s hg38.chr21_GL383578v2_alt 23320 77 + 63917 -------CTTTTCTCTTTTTTTTTTGGACATGAAAATGGGT--------------------TTATTTATTTATTTTT----Attttattattatttattatactttaa s panTro5.chr21 860123 72 + 33445071 -------CTTTTCTTTTTTTTTTT--GACATGAAAATGGGt--------------------ttatttatttatttat-----ttatatt-tta-ttattatactttaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14545495 75 + 46275980 -------CTTTTCTTTTTTTTTT---GACATGAAAATGGGT--------------------TTATTTATTTATTTATTTA-tttttatt-tta-ttattatactttaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457575 70 - 13858734 -------CTTTTTTTT----------AACATGAAAATGGGt--------------------ttatttatttatttatttatAttttattatta-ttattatactttaa i gorGor5.CYUI01015003v1 C 0 C 0 s dasNov3.JH568778 624826 100 - 6883506 CATCCTAGTCCTCCATCGTGTGTT--ATCATCCACCTTGGTTACTACCATGTCTCatttaattatttatttatttattta-tttatgtatcta-tt----tatttTAA i dasNov3.JH568778 C 0 I 574 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064021 0 + 9889416 C e cebCap1.NW_016107322v1 7015959 0 - 14377064 C e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19127879 0 + 50472720 C e otoGar3.GL873528 18314543 0 - 38779656 C e canFam3.chr31 11429810 0 + 39895921 C e chlSab2.chr2 12290840 0 - 90373283 C e colAng1.NW_012116933v1 597409 0 - 3237654 C e manLeu1.NW_012107264v1 619031 0 + 1337817 C e cerAty1.NW_012002954v1 5646416 0 + 21915920 C e macNem1.NW_012019910v1 5906799 0 + 9440265 C e rheMac8.chr3 152654168 0 - 185818997 C e macFas5.chr3 159461940 0 - 192294377 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=324061.000000 s hg38.chr21_GL383578v2_alt 23397 605 + 63917 gttttagggtacatgtgcacaacgtgccggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttagcattaggtatatctcccaatgctatccctccccccatcccccaccccacaactgtccccggtgtgtgatgttccccttcctgtatccatgtgttctcattgttcagttcccacctatgagtgagaacatgcggtgtttggtttttcgtccttgagatagtttgctgagaatgatggtttccagctccatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattctatggtgtatatgtgccacattttcttaatccagtctatcactgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcatcatgatttataattctttgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgtcttccacaatggtggaactagtttacagtcccaccaacagtgtaaaagt s panTro5.chr21 860195 605 + 33445071 gttttagggtacatgtgcacaacgtgccggtttgttacatatgtatacatgtgccatgttggtgtgctgcaccgattaactcgtcatttagcgttaggtatatctcctaatgctatccctccccccatcccccaccccacaacagtacctggtgtgtgatgttccccttcctgtatccatgtgttctcattgttcaattcccacctatgagtgagaacatgcagtgtttggttttttgtccttgcaatagtttgctgagaatgatggtttccagctccatccatgtccctacaaaggacgtgaactcatcattttttatggctgcatagtattctatggtgtatatgtgccacattttcttaatccaatctatcactgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacatgtgcatgtgtctttatagcatcgtgatttataatcctttgggtatatacccagtaatgggatggctggctcaaatggaatttctagttctagatccttgaggaatcgccacatagtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaatgt i panTro5.chr21 C 0 I 726 s panPan2.chr21 14545570 605 + 46275980 gttttagggtacatgtgcacaacgtgccggtttgttacatatgtatacatgtgccatgttggtgtgctgcaccgattaactcgtcatttagcgttaggtatatctcctaatgctatccctccccccatcccccaccccacaacagtacccggtgtgtgatgttccccttcctatatccatgtgttctcattgttcaattcccacctatgagtgagaacatgcagtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagctccatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattctatggtgtatatgtgccacattttcttaatccaatctatcactgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaataaacatacgtgtgcatgtgtctttatagcatcgtgatttataatcctttgggtatatacccagtaatgggatggctggctcaaatggaatttctagttctagatccttgaggaatcgccacatagtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaatgt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 457645 604 - 13858734 gttttagggtacatgtgcacaacgtg-cggtttgttacatatgtatacatgtgccatgttggtgcgctgcacccattaactcgtcatttagcgttaggtatatctcctaatgctatccctccccccatcccccaccccacaacagtccctggtgtgtgatgttccccttcctgtatccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagctccatccatgtccctaaaaaggacatgaactcatcattttttatggctgcatagtattctatggtgtatatatgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaatagtgccacaattaacatacgtgggcatatgtctttatagcatcatgatttataatcctttgggtatatactcagtaatgagatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggtggaactagtttacagtcccaccaacagtgtaaaagt i gorGor5.CYUI01015003v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064021 0 + 9889416 C e cebCap1.NW_016107322v1 7015959 0 - 14377064 C e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19127879 0 + 50472720 C e otoGar3.GL873528 18314543 0 - 38779656 C e dasNov3.JH568778 624926 574 - 6883506 I e canFam3.chr31 11429810 0 + 39895921 C e chlSab2.chr2 12290840 0 - 90373283 C e colAng1.NW_012116933v1 597409 0 - 3237654 C e manLeu1.NW_012107264v1 619031 0 + 1337817 C e cerAty1.NW_012002954v1 5646416 0 + 21915920 C e macNem1.NW_012019910v1 5906799 0 + 9440265 C e rheMac8.chr3 152654168 0 - 185818997 C e macFas5.chr3 159461940 0 - 192294377 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1371186.000000 s hg38.chr21_GL383578v2_alt 24002 2565 + 63917 gttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccactttttgatggagttgtttgttttttt--cttgtgaatttgtttgagttcattatagattctggatattagccctttgtcaggtgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgacggtagtttcttttgctgtgcagaagctctttagtttaattagatgccatttgtcaattttggcttttgttgccatgcttttggtgttttagacatgaggtccttgcccgtgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatctaagtctttaatctatcttgaatttatttttgtataaggtgtaaggaagggatccggtttcagctttctacatatggctaaccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttgtcaggtttttcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtgtgaagtcaggtagcatgatgcctccagctttgttcttttggcttaggattgacttgggaatgcgggcacttttttggttccatatgaactttaaagtaattttttccaattctatgaagaaagtcattggtagcttgatggggatg-cattgaatctataaattaccttgggcagtatggccattttcacgatattgattcttcctacccatgagcatggaatgttcttccatttgtttgtatcctcttttatctcaatgagcagtggtttgtagttctccttgaagagttccttcacatcacttgtaagttggattcctaggtattttattcttgaagcaattgtgaatgggagttcactcatgatttggctgtctgtctgttattggtgtataagaatgcttgtgatttttgcacatcgattttgtatcctgaaacttttctgaagttacatatcagcttaaggagatttagggctgagacaatggggttttctagatatacaatcatgtcatctgcaaacaggtacaatttgacttcctcttttcttaattgaatgctctttatttccttctcctgcctgattgccctggccggaacttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatacttctagtttttgtccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttatggagag-tttttagcatgaagggttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttgattctgttaatatgctggattacgtttattgattttcatatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatatgttgctggatttggtttgccagtattttattgaggatttttgcatcaatgttcatcaaggatattggtctaaaattctcttttttggttgtgtctctgccagtctttgttatcaggatgatgctggcctcataaaatgagttagggaagattccctctttttctattgattagaatggtttcagaaggaatggtaccagctcctccttgtacctctggtagaattcggctgtgaacccatctggtcctggactatttttggttggtaagctattaattattgcctcaatttcgtagcctgttatt-gttctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgaggaatttatccattttttctagattttctagtttattcgcttagaggtgtttatagtattctctgatggtaacttgtatttctgtgggattggtggtgatatcccctttgtcattttttattgcatctattttattcttttctcttttcttctttattagtcttgttagtggtctatcaattttgttgatcttttcaaaaaaccagctcctggattcactgattttttgaagggttttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttcttttagttgtgatgttagggtgtcaattttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttcaatgtgtcccagagattctggtattttgtg s panTro5.chr21 861526 2544 + 33445071 gttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcatccactttttgatggagttgtttgtttttttttcttgtaaatttgtttgagttcattgtaggttctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgacggttgtttcttttgctgtgcagaagctcttgagtttaattagatcccatttgtcaattttggcttttgttgccatgcttttggtgttttagacatgaggtccttgcccgtgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacatctaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctaaccagttttcccagcaccatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccactgatctatatctctgttttggtaccagtactatgctgttttggttactgtagccttgtagtacagtttgaagtcaggtagcgtgatgcctccagctttgttcttttggcttaggattgacttgggaatgcgggcacttttttggtttcatatgaactttaaagtaattttttccaattctatgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctgcccatgagcatggaatgttcttccatttgtttgtatcctgttttatctcattgagcagtggtttgtagttctccttgaagagttccttcacatcacttttaagttggattcctaggtattttattcttgaagcaattgtgaatgggagttctctcatgatttggctgtctgtgtgttatt-------------------------tgcacatcgattttgtatcctgaaacttttctgaagttgcatatcagcttaaggagatttagggctgagacaatggggttttctagatatacaatcatgtcatcttcaaacaggtacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctgattgccctggccggaaattccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatacttctagtttttgtccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttatggagag-tttttagcatgaagcgttgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttgattctgtttatacactggattacgtttattgattttcatatgttgaaccagccttgcatctcagggatgaagcccacttgatcatggtggataagctttttgatgtgttgctggattcggtttgccagtattttattgaggatttttgcatcaatgtttatcaaggatattagtctaaaattctcttttttggatgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctgttgattagaatggtttcagaaggaatggtaccagctcctccttgtacctctggtaggattcggctgtgaatccatctgatcctggactttttttggttagtaagctattaattattgcctcaatttcatagcctgttatttggtctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgaggaatttatccattttttctagattttctagtttattctcgtagaggtgtttatagtattctctgatggtaacttgtatttctgtgggattggtggtgatatcccctttgtcattttttattgcatctattttattcttttctcttttcttctttattagtcttgttagtggtctatcaattttgttgatcttttcaaaaaaccagctcctggattcactgattttttgaagggttttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttcttttagttgtgatgttagggtgtcagttttagatctttcctgctttctcttgtgggcatttagtgctataaatttccctctacacaatgctttcaatgtgtcccagagattctggtattttgtg i panTro5.chr21 I 726 C 0 s panPan2.chr21 14546175 2543 + 46275980 gttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcatccactttttgatggagttgtttgttttttt-tcttgtaaatttgtttgagttcattgtaggttctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattctgtaggttgcctgttcactctgacggttgtttcttttgctgtgcagaagctcttgagtttaattagatcccatttgtcaattttggcttttgttgccatgcttttggtgttttagacatgaggtccttgcccgtgcctatgtcctgaatggtaatgcctaggttttcttctagggtttttatggttttaggtctaacatctaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctaaccagttttcccagcatcatttattaaatagggaatcctttccccattgcttgtttttctcaggtttgtcaaagatcagatagttgtagatatgtggcattatttctgagggctctgttctgttccactgatctatatctctgttttggtaccagtactatgctgttttggttactgtagccttgtagtatagtttgaaggcaggtagcgtgatgcctccagctttgttcttttggcttaggatttacttgggaatgcgggcacttttttggtttcatatgaactttaaagtaattttttccaattctatgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcagtatggccattttcatgatattgattcttcctgcccatgagcatggaatgttcttccatttgtttgtatcctgttttatctcattgagcagtggtttgtagttctccttgaagagttccttcacatcacttttaagttggattcctaggtattttattcttgaagcaattgtgaatgggagttctctcatgatttggctgtctgtgtgttatt-------------------------tgcacatcgattttgtatcctgaaacttttctgaagttgcatatcagcttaaggagatttagggctgagacaatggggttttctagatatacaatcatgtcatcttcaaacaggtacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctgattgccctggccggaaattccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaagggaatacttctagtttttgtccattcagtatgatattggctgtgggtttgtcatagatagctcttattattttgagatacgtcccatcaatacctaatttatggagag-tttttagcatgaagcattgttgaattttgtcaaaggccttttctgcatctattgagataatcatgtggtttttgtctttgattctgtttatacgctggattacgtttattgattttcatatgttgaaccagccttgcatctcagggatgaagcccacttgatcatggtggataagctttttgatgtgttgctggattcggtttgccagtattttattgaggatttttgcatcaatgtttatcaaggatattagtctaaaattctcttttttggatgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctgttgattagaatggtttcagaaggaatggtaccagctcctccttgtacctctggtaggattcggctgtgaatccatctgatcctggactttttttggttagtaagctattaattattgcctcaatttcatagcctgttatttggtctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgaggaatttatccattttttctagattttctagtttattctcgtagaggtgtttatagtattctctgatggtaacttgtatttctgtgggattggtggtgatatcccctttgtcattttttattgcatctattttattcttttctcttttcttctttattagtcttgttagtggtctatcaattttgttgatcttttcaaaaaaccagctcctggattcactgattttttgaagggttttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctagcttttgaatgtgtttgctcttgcttctctagttcttttagttgtgatgttagggtgtcagttttagatctttcctgctttctcttgtgggcatttagtgctataaattttcctctacacactgctttcaatgtgtcccagagattctggtattttgtg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 458249 2566 - 13858734 gttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatgaccagtgatgatgagcattttttcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcacccactttttgatggagttgtttgttttttt--cttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcaggtgagtaggttgcagaaattttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctcattagtttaattagatctcatttgtcaattttggcttttgttgccatgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaacatgtaagtctttaatccatcttgaattaatttttgtatgaggtgtaaggaagggatctagtttcaggtttctacatatggctaaccagttttcccagcaccatttattaaatagggaatccttttcccattgcttgtttttgtcaggtttgtcaaagatcagatagttgtagatatgtggccttatttctgagggctctgttctgttccattgatctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtggtatagtttgaagtcaggtagcgtgatgcctccagctttgttcttttggcttaggattgacttgggaatgcgggcacttttttggttccatatgaactttaaagtaattttttccaaatctataaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcaatatggccattttcatgatattgattcttcctgtccatgagcatggaatgttcttccatttgtttggatcctcttttatctcattgagcagtggtttgtagttctccttgaagagttccttcacatcacttgtaagttggattcctaggtattttattcttgaagcaattgtgaataggagttcactcatgatttggctctctgtctgttattggtgtataagaatgcttgtgatttttgcacat-gattttgtatcctgaaacttttctgaagttgcatatcagcttaaggagatttagggctgagacaatggggttttctagatatacaatcatgtcatcttcaaacaggtacaatttgacttcctcttttcctaattgaatgccctttatttccttctcctgcctgattgccctggccagaagttccaacactatgttgaataggagtggtgagagagggcatccctgtcttgtgccagttttcaaaaggaatacttctagtttttgtccattcagtatgagattggctgtgggtttgtcatagatagctcttattattttgagatacatcccatcaatacctattttattgagagttttttagcatgaagggttgttgaattttgtcaaaggccttgtctgcatctattgagataatcatgtggtttttgtctttgattctgtttatatgctggattacgtttattgattttcatctgttgaacctgccttgcatcccagggatgaagaccacttgatcatggtggataagctttttgatgtgttgctggattcagtttgccagtattttattgaggatttttgcatcaatgtttatcaaggatattggtctaaaattctcttttttggttgtgtctctgccaggctttggtatcaggatgatgctggcctcataaaatgagttagggaggattccctctttttctattgattagaatggtttcagaaggaatgataccagctcctccttgtacctctggtagaattcggctgtgaatccatctggtcctggactttttttggttagtaagctattaattattgcctcaatttcatagcctgttatt-ggtctattcagagattcaacttcttcctggtttagtcttgggagggtgtatgtgtcgagggatttatccattttttctagattttctagtttattcgcgtagaggtgtttatagtattctctgatggtagcttttatttctgtgggattggtggtgatatcccctttgtcattttttattgcatctatattattcttttctcttttcttctttattagtcttgctagtggtctatcaattttgttgatcttttcaaaaaaccagctcctggattcactgattttttgaagggttttttgtgtctctatctccttcagttctgctctgatcttagttatttcttgccttctgctacgttttgaatgtgtttgctcttgcttctctagttcttttagttgtgatgttagggtgtcaattttagatatttcctgctttctcttgtgggcatttagtgctataaatttccctctacacactgctttcaatgtgtcccagagattctggtatgttttg i gorGor5.CYUI01015003v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064021 0 + 9889416 C e cebCap1.NW_016107322v1 7015959 0 - 14377064 C e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19127879 0 + 50472720 C e otoGar3.GL873528 18314543 0 - 38779656 C e dasNov3.JH568778 624926 574 - 6883506 I e canFam3.chr31 11429810 0 + 39895921 C e chlSab2.chr2 12290840 0 - 90373283 C e colAng1.NW_012116933v1 597409 0 - 3237654 C e manLeu1.NW_012107264v1 619031 0 + 1337817 C e cerAty1.NW_012002954v1 5646416 0 + 21915920 C e macNem1.NW_012019910v1 5906799 0 + 9440265 C e rheMac8.chr3 152654168 0 - 185818997 C e macFas5.chr3 159461940 0 - 192294377 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=7098.000000 s hg38.chr21_GL383578v2_alt 26567 1 + 63917 t s panTro5.chr21 864070 1 + 33445071 t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14548718 1 + 46275980 t i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 460815 1 - 13858734 t i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654168 1 - 185818997 T i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461940 1 - 192294377 T i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906799 1 + 9440265 T i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646416 1 + 21915920 T i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290840 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619031 1 + 1337817 T i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597409 1 - 3237654 T i colAng1.NW_012116933v1 C 0 C 0 s cebCap1.NW_016107322v1 7015959 1 - 14377064 T i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064021 1 + 9889416 T i aotNan1.NW_018487195v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19127879 0 + 50472720 C e otoGar3.GL873528 18314543 0 - 38779656 C e dasNov3.JH568778 624926 574 - 6883506 I e canFam3.chr31 11429810 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=55938.000000 s hg38.chr21_GL383578v2_alt 26568 7 + 63917 ctGACTC s panTro5.chr21 864071 7 + 33445071 ctGACTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14548719 7 + 46275980 ctGACTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 460816 7 - 13858734 ctGACTC i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654169 7 - 185818997 CTGGCTC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461941 7 - 192294377 CTGGCTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906800 7 + 9440265 CTGGCTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646417 7 + 21915920 CTGGCTC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290841 7 - 90373283 CTGGCTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619032 7 + 1337817 CTGGCTC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597410 7 - 3237654 CTGGCTC i colAng1.NW_012116933v1 C 0 C 0 s cebCap1.NW_016107322v1 7015960 7 - 14377064 CTGACTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064022 7 + 9889416 CTGACTC i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18314543 7 - 38779656 CTGACCC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429810 7 + 39895921 CTGGTCC i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19127879 0 + 50472720 C e dasNov3.JH568778 624926 574 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=149709.000000 s hg38.chr21_GL383578v2_alt 26575 18 + 63917 TAATTTCTGCCTAGTCCC s panTro5.chr21 864078 18 + 33445071 TAATTTCTGCCTAGTCCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14548726 18 + 46275980 TAATTTCTGCCTAGTCCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 460823 18 - 13858734 GAATTTCTGCCTAGTCCC i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654176 18 - 185818997 TAATTTCTGCCTAGTCCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461948 18 - 192294377 TAATTTCTGCCTAGTCCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906807 18 + 9440265 TAATTTCTGCCTAGTCCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646424 18 + 21915920 TAATTTCTGCCTAGTCCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290848 18 - 90373283 TAATTTCTGCCTAGTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619039 18 + 1337817 TAATTTCTGCCTAGTCCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597417 18 - 3237654 TAATTTCTGCCTAGTCCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127879 11 + 50472720 -------TACCTAGTCCT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015967 18 - 14377064 TAATTTCTGCCTAGTCCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064029 18 + 9889416 TAACTTCCGTCTAGTCCT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18314550 18 - 38779656 TAGCTTTTATGTAGCTTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429817 18 + 39895921 TAACATCTGCCTAATCTT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e dasNov3.JH568778 624926 574 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=2750234.000000 s hg38.chr21_GL383578v2_alt 26593 309 + 63917 CCATGGGGTCATCACTCATCTGGGTTAACACTATGTT------CCTTTGGCCCAAACACAATGTCCAATCCTGGAGACAAAGCCTACTGACATTACAGGGACATGACACACAAGGGT-----------------------------------------------GTATGGTTGCAGAGTCAGCCAATGTGGATGCTCTCCTTGTAGTAACAAAGTA-ATCTTGTCAATTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCTAGG--TGt--tttt--------t----------tctgtgactgcacaatattccattctatacctgtattatgatgtgtgtaattac s panTro5.chr21 864096 309 + 33445071 CCATGGGGTCATCACTCATCTGGGTTAACACTGTGTT------CCTTTGGCCCAAACACAATGTCCAATCCTGGAGACAAAGCCTACTGACATTACAAGGACACGACACACAAGGGT-----------------------------------------------GTAGGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTTGTAGTAACAAAGTA-ATCTTGTCAATTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCTAGG--TGt--tttt--------t----------tctgtgactgcacaatattccattctatacctgtattatgatgtgtgtaattac i panTro5.chr21 C 0 C 0 s panPan2.chr21 14548744 309 + 46275980 CCATGGGGTCATCACTCATCTGGGTTAACACTGTGTT------CCTTTGGCCCAAACACAATGTCCAATCCTGGAGACAAAGCCTACTGACATTACAAGGACATGACACACAAGGGT-----------------------------------------------GTAGGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTTGTAGTAACAAAGTA-ATCTTGTCAATTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCTAGG--TGt--tttt--------t----------tctgtgactgcacaatattccattctatacctgtattatgatgtgtgtaattac i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 460841 309 - 13858734 CCATGGGGTCATCACTTATCTGGGTTAACACTATGTT------CTTTTGGCCCAAACACAATGTCCAATCCTGGAGACAAAGCCTACTGACATTACAGGGACATGACACACAAGGGT-----------------------------------------------GCAGGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTTGTAGTAACAAAGTA-ATCTTGTCAATTGAACCATGTTCTGCATAGTAGTGAGAAGACTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCTAGG--TGT--TTTT--------T----------TCTGtgactgcacaatattccattctatacctgtattatgatgtgtgtaattac i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654194 313 - 185818997 CCATGGGGTCACCACTCATCTGGGTTAACACCATG-T------CCTTTGGCCCAAACACAATGTTCATTCCTGGAGTCAAACCCTACTGACACTACAGGGACATGACACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTGGCAATAACAAAGTA-ATCCTGTCAACCGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCCAGT--TTT--TGTG--------TGT-----GTGTGTGTgactgcacaatattccattctatacctgtattacgatgtgtgtaattac i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159461966 313 - 192294377 CCATGGGGTCACCACTCATCTGGGTTAACACCATG-T------CCTTTGGCCCAAACACAATGTTCATTCCTGGAGTCAAACCCTACTGACACTACAGGGACATGACACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTGGCAATAACAAAGTA-ATCCTGTCAACTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCCAGT--TTT--TGTG--------TGT-----GTGTGTGTgactgcacaatattccattctatacctgtattacgatgtgtgtaattac i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5906825 313 + 9440265 CCATGGGGTCACCACTCATCTGGGTTAACACCATG-T------CCTTTGGCCCAAACACAATGTTCATTCCTGGAGTCAAACCCTACTGACACTACAGGGACATGACACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTGGCAATAACAAAGTA-ATCCTGTCAACTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCCAGT--TTT--TGTG--------TGT-----GTGTGTGTgactgcacaatattccattctatacctgtattacgatgtgtgtaattac i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646442 315 + 21915920 CCATGGGGTCACCACTCATCTGGGTTAACACCATG-T------CCTTTGGCCCAAACACAATGTTCATTCCTGGAGACAAACCCTACTGACACTACAGGGACATGATACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTGGCAATAACAAAGTA-ATCCTGTCAACTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCCAGTtgttg--tgtg--------tgt-----gtgtgtgtgACTGCACAATATTCCATTCTATACCTGTATTACGATGTGTGTAATTAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12290866 314 - 90373283 CCATGGAGTCACCACTCATCTGGGTTAACACCATGTT------CCTTTGGCCCAAACACAATGTTCATTCCTGGAGACAAACCCTACTGACACTACAGGGACATGACACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTCAACCAATGTGGATGCTCTCTTGGCAATAACAAAGTA-ATCCTGTCAACTGAACCATGTTCTGTGTAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCCAGT--TTT--TTTT--------TGT-----GTGTGTGTGACTGCACAATATTCCATTCTATACCTGTATTACGACGTGTGTGATTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619057 318 + 1337817 CCATGGGGTCACCACTCATCTGGGTTAACACCATG-T------CCTTTGGCCCAAACACAATGTTCATTCCTGGAGACAAACCCTACTGACACTACAGGGACATGACACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTCAACCAATGTGGATGCTCTCCTGGCAATAACAAAGTA-ATCCTGTCAACTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACATATTTCCAGT--TTT--TTTt---gtgtgtgt-----gtgtgtgtgACTGCACAATATTCCATTCTATACGTGTATTACGATGTGTGTAATTAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597435 322 - 3237654 CCATGGGGTCACCACTCATCTGGGTTAACACCATGTT------CCTTTGGCCCAAACACAATGTTCTTTCCTGGAGACAAACCCTACTGACACTACAGGGACATGACACACAAGGGT-----------------------------------------------ATATGGTTGCAGAGTTAACCAATGTGGATGCTCTCCTGGCAGTAACAAAGTA-ATCCTGTCAACTAAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGAACGTATTTCCAgt--ttg--tgtgtgtgtgtgtgt-----gtgtatgtgactgcacaatattccattctatatctgtattacgatgtgtgtaattac i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19127890 309 + 50472720 CCATGGAGTTATCACTCATCTAGGTTTCCACCATGTT------CCTTTGACCCAAACACAGTGTTCATTCCTGGAGACAAACCCTACTGACACTACAGGGATGTAACACACAAGGGT-----------------------------------------------GTAGGGTTGCAGAGTTAGCCAATGTGTATGCTCTCCTTGTAGTAACCAAAGG-ATCCTATCAATTGAACCGTGTTCTGCATAATAGTGAGAAGCTTGCTGTTAGCATTTAACAATGCATTTAGGACATATTTCCAGG--TTA--TTtt--------t----------ttagtgactgcacaatattgcattctatacttgtattatgatgtgtttaattac i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7015985 312 - 14377064 CCATGGGGTCATCACTCATCTAGGTTTCCACCACGTT------CCTCTGACCCAAACACAGTGTTCATTCCTGGAGACAAACCCTACTGACACTACAGGGATGTAACACACAAGGAT-----------------------------------------------GTAGGGTTGCAGAGTTAGCCAATGTGTATGCTCTCCTTGTAGTAACAAAAGGAATCCTGTCAATTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTAAGcatttaacaatgtatttaggacatatttccagg--ttaattttt--------t----------ttagtgactgcacaatattccattctatacttgtattatgatgtgtttaattac i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064047 308 + 9889416 CCATGGGGTCATCACTCATCTAGGTTTCCAGCATGTT------CCTTTGACCCAAACAC--TGTTCATTCCTGGAGACAAACCCTACTGACACTACAGGGATGTAACACACAAGGAT-----------------------------------------------GTCGGGTTGCAGAGTTAGCCAATGCGTATGCTCTCCTTGTAGTAACAAAAGG-ATCCTGTCAATTGAACCATGTTCTGCATAATAGTGAGAAGATTGCTGTTAGCATTTAACAATGTATTTAGGACATATTTCCAGG--TTA-CTTtt--------t----------ttagtgactgcacaatattccattctatatttatattatgatgtgtttaattac i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18314568 359 - 38779656 CCGGGCAGTCATCACCTGTCCAAGTTACCACCCTATC------TCTTTGACCCAAACATGA--TTTATCCCTGGGGATAAAACCTCACGTAACCATAGGAACATGACACACAGGGGTGGAGTCAGCCAATATGCTATCCTTGGAGTAACCAACTAATCCTATCGGTAGAGGGGTGGAGTCAGCCAAT----ATGCTATCCTTGGAGTAACCAACAA-ATCCTATCAGTAGAGCCACGCTCTACATAATAGTGAGAAGACtgattttagcatttaactatatattcaggacata-ttccagg--tta--tctt--------tctcattccttttggtgactacacagtatttccttccatagctgtattacaatgtgtttaattac i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11429835 313 + 39895921 CAATGGTGTCACCACCTATTTGGGTTG-CATCATGTC------TCTTTGATCCAAACACA--GTTCATTCCTGGAGGCAAACCCTACTGTAATGTCAGGGGTTTGATACATAGGGGT-----------------------------------------------GGAAGGTTGCAGAGTCAGCCAATTTCTATGCTCTCCT--TAGTAACCAATTA-ATCCTGTCaatagaaccatagtatgcataatatttgaaagattgcttttagcacttaacgatatattcagtacatatttccagg--tta--tcca--------cctcattatttttaatgactgcacagtattccattgtatagatgtattatgat-tgtttaattac i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 625500 319 - 6883506 ccatggtgtggtggttgaccatgttcatctccctgttagctgaTCTTTGACCCAAATAC--TGTTTCTTCGTCTAGGCGGACCCTACT---ACTGCAGGGCTGTAACTCACGGGGGT-----------------------------------------------GAAAAGTTGCAGAAACAGCC-ATCTGGATGCCTTCATTTTAAAAACCAATTA-AACCTACCAAAGGAATTATGCCTTACAGAATAGTTGAAAAATtgcttttaacgtttaacaatatattggtgacatatttccagg--tta--tcca--------tctcattaaaaaaaaagacttctcagcattccattctatggatgtgttatgaggtacttaattac i dasNov3.JH568778 I 574 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=132624.000000 s hg38.chr21_GL383578v2_alt 26902 16 + 63917 tccctggtagttttca s panTro5.chr21 864405 16 + 33445071 tccctggtagttttca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549053 16 + 46275980 tccctggtagttttca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461150 16 - 13858734 tccctggtagttttca i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654507 16 - 185818997 tccctggtagtttgta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462279 16 - 192294377 tccctggtagtttgta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907138 16 + 9440265 tccctggtagtttgta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646757 16 + 21915920 TCCCTGGTAGTTTGTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291180 16 - 90373283 TCCCTGGTAGTTTGTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619375 16 + 1337817 TCCCTGGTAGTTTGTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597757 16 - 3237654 tccctagtagtttgta i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19128199 16 + 50472720 tccctgatagttttca i calJac3.chr21 C 0 I 4 s cebCap1.NW_016107322v1 7016297 16 - 14377064 tccctggtagttttca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064355 16 + 9889416 tccctgatagttttca i aotNan1.NW_018487195v1 C 0 I 452 s otoGar3.GL873528 18314927 16 - 38779656 ctcccagtggattcta i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 625819 16 - 6883506 ttcctggtggattttt i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e canFam3.chr31 11430148 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=-1393.000000 s hg38.chr21_GL383578v2_alt 26918 8 + 63917 att----------------------------ttttt-- s panTro5.chr21 864421 8 + 33445071 att----------------------------ttttt-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549069 8 + 46275980 att----------------------------ttttt-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461166 8 - 13858734 att----------------------------ttttt-- i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654523 8 - 185818997 att----------------------------ttttt-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462295 5 - 192294377 a-------------------------------tttt-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907154 8 + 9440265 att----------------------------ttttt-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646773 7 + 21915920 A-t----------------------------ttttt-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291196 36 - 90373283 Atttttattttttattttttatttttatttatttat-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619391 8 + 1337817 Att----------------------------ttttt-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597773 10 - 3237654 atttt--------------------------ttttt-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19128219 8 + 50472720 aTT----------------------------TTTtt-- i calJac3.chr21 I 4 C 0 s cebCap1.NW_016107322v1 7016313 8 - 14377064 att----------------------------ttttt-- i cebCap1.NW_016107322v1 C 0 C 0 s otoGar3.GL873528 18314943 8 - 38779656 ----------------------------aagttatt-- i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 625835 8 - 6883506 ------------------------------gtttccca i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e saiBol1.JH378168 2480493 132 + 13128814 I e canFam3.chr31 11430148 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=22061.000000 s hg38.chr21_GL383578v2_alt 26926 3 + 63917 ttt s panTro5.chr21 864429 3 + 33445071 ttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549077 3 + 46275980 ttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461174 3 - 13858734 ttt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654531 3 - 185818997 ttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462300 3 - 192294377 ttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907162 3 + 9440265 ttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646780 3 + 21915920 ttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291232 3 - 90373283 ttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619399 3 + 1337817 ttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597783 3 - 3237654 ttt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19128227 3 + 50472720 ttt i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7016321 3 - 14377064 ttt i cebCap1.NW_016107322v1 C 0 I 450 s dasNov3.JH568778 625843 3 - 6883506 tat i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314951 0 - 38779656 C e canFam3.chr31 11430148 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=11335.000000 s hg38.chr21_GL383578v2_alt 26929 3 + 63917 ttt s panTro5.chr21 864432 3 + 33445071 ttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549080 2 + 46275980 tt- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461177 3 - 13858734 ttt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654534 3 - 185818997 ttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462303 3 - 192294377 ttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907165 3 + 9440265 ttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646783 3 + 21915920 ttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291235 3 - 90373283 ttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619402 3 + 1337817 ttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597786 3 - 3237654 ttt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19128230 2 + 50472720 -tg i calJac3.chr21 C 0 C 0 s dasNov3.JH568778 625846 3 - 6883506 ttt i dasNov3.JH568778 C 0 I 1828 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314951 0 - 38779656 C e canFam3.chr31 11430148 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=86411.000000 s hg38.chr21_GL383578v2_alt 26932 18 + 63917 c-----gagatggagtttcaccc s panTro5.chr21 864435 19 + 33445071 t----tgagatggagtttcaccc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549082 17 + 46275980 ------gagatggagtttcaccc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461180 23 - 13858734 ttttttgagatggagtttcaccc i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654537 19 - 185818997 t----tgaggtggagtttcaccc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462306 19 - 192294377 t----tgaggtggagtttcaccc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907168 19 + 9440265 t----tgaggtggagtttcaccc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646786 19 + 21915920 t----tgagatggagtttcaccc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291238 19 - 90373283 t----tgagatggagtttcaccc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619405 19 + 1337817 t----tgagatggagtttcaccc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 597789 19 - 3237654 t----tgagatggagtttcaccc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19128232 19 + 50472720 t----agatatgggatctttccc i calJac3.chr21 C 0 I 2559 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18314951 0 - 38779656 C e dasNov3.JH568778 625849 1828 - 6883506 I e canFam3.chr31 11430148 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=763452.000000 s hg38.chr21_GL383578v2_alt 26950 164 + 63917 tttcacccaggctagagtgaagtgacacaatctcagctcactgcagcctctgcctcctaggttcaagcaattctcctgcctctgcttcctgagtagctgggattataggcacccgccgccatgtctggctaatttttgtat----ttttttagtagagatggggtttc s panTro5.chr21 864454 164 + 33445071 tttcacccaggctggagtgaagtgacacagtctcagctcactgcagcctctgcctcctaggttcaagcaattctcctgcctctgcttcctgagtagctgggattataggcacctgccaccatgtccggctaatttttgtat----ttttttagtagagatggggtttc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549099 164 + 46275980 tttcacccaggctggagtgaagtgacacagtctcagctcactgcagcctctgcctcctaggttcaagcaattctcctgcctctgcttcctgagtagctgggattataggcacccgccaccatgtccggctaatttttgtat----ttttttagtagagatggggtttc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461203 164 - 13858734 tttcacccaggctggagtgaagtgacacaatctcagctcactgcagcccctgcctcctaggttcaagcaattctcctgcctctgcttcctgagtagctgggattataggcacccgccaccatgtccggttaatttttgtat----ttttttagtagagatggggtttc i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654556 168 - 185818997 ttttgcccaggctggagcgaagtgccacaacctcagctcattgcagcctccacctcctgggttcaagcaattctcctgcctcagcttcctgagtagctgggattataggcgcccaccaccatgtatggataatttttgtattttcttttttagtagggacggggtttc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462325 168 - 192294377 ttttgcccaggctggagcgaagtggcacaacctcagctcattgcagcctccacctcctgggttcaagcaattctcctgcctcagcttcctgagtagctgggattatacgcgcccaccaccatgtatggataatttttgtattttcttttttagtagggacggggtttc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907187 168 + 9440265 ttttgcccaggctggagcgaagtggcacaacctcagctcattgcagcctccacctcctgggttcaagcaattctcctgcctcagcttcctgagtagctgggattatacgcgcccaccaccatgtatggataatttttgtattttcttttttagtagggacggggtttc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646805 168 + 21915920 ttttgcccaggctggagtgaagtggcacaacctcagctcattgcagcctccacctcctgggttcaagcaattctcctgcctcagcttcctgagtagctgggattataggcacccaccaccatgtctggataatttttgtattttcttttttagtagggacggggtttc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291257 168 - 90373283 ttttgcccaggctggagtgaagtggcacaacctcagctcattgcagcctccacctcctgggctcaagcagttctcctgcctcagcttcctgagtagctgggattataggcgcccaccaccatgtctagataatttttgtattttcttttttagtagggatggggtttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619424 168 + 1337817 ttttgcccaggctggagtaaagtggcacaacctcagctcattgcagcctccacctcctgggttcaagcaattctcctgcctcagcttcctgagtagctgggattataggcgcccaccaccatgtctggataatttttgtattttcttttttagtagggacggggtttc i manLeu1.NW_012107264v1 C 0 M 206 s colAng1.NW_012116933v1 597808 168 - 3237654 ttttgcccaggcttgagtgaagtggcacaatctcagctcactgcagcctctacctcctgggttcaagcaattctccttcctcagcttcctgagtagctgggattataggcgcccaccaccatgtctggctaatttttgtattttcttttttagtagggacggggtttc i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e otoGar3.GL873528 18314951 0 - 38779656 C e dasNov3.JH568778 625849 1828 - 6883506 I e canFam3.chr31 11430148 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=839387.000000 s hg38.chr21_GL383578v2_alt 27114 232 + 63917 agcattttggcaaggctggtcttcaactcctgacctctggtgatccacctgccttgggctcccaaagtgctaggattacaggcgtgagccactgcgtcaggccAA--AAAGTTTtttttagtagagatggg-gtctcattgtcttgtccaggctgatcttgaaatcacctcaagcatgcctttcagtttggcctcccaaagtgctgggattatagttctgagtcattgcacccag s panTro5.chr21 864618 232 + 33445071 agcgtgttggcaaggctggtcttgaactcctgacctcaggtgatccatctgccttgggctcccaaagtgctaggattacaggcgtgagccactgcgtcaggccAA--AAATTTTtttttagtagagatggg-gtctcattatcttgtccaggctgatcttgaaatcacctcaagcatgcctttcagtttggcctcccaaagtgctgggattatagttctgagccattgcacccag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549263 232 + 46275980 agcatgttggcaaggctggtcttgaactcctgacctcaggtgatccatctgccttgggctcccaaagtgctaggattacaggcgtgagccactgcgtcaggccTA--AAATTTTtttttagtagagatggg-gtctcattatcttgtccaggctgatcttgaaatcacctcaagcatgcctttcagtttggcctcccaaagtgctgggattatagttctgagccattgcacccag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461367 232 - 13858734 agcatgttggcaaggctggtcttgaactcctgacctcaggtgatccacctgccttgggctcccaaagtgctaggattacaggcgtgagccactgcgtcaggccAA--AAATTTTtttttagtagagatggg-gtctcgttatcttgtccaggctgatcttgaaatcacctcaagcatgcctttcagtttggcctcccaaagtgctgggattatagttctgagccattgcacccag i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654724 217 - 185818997 ggcatgttagccaggctggatttgaactcctgacctcaggtgatccacctgcctcgggctcccaaagtgctaggattacaagtgtgagccaccgcatcaggccAA-----------------agggatggg-gtctcactatcttatccaggctgatcttgaaagcacctcaagcatgcctttcactttggcttcccaaagtgctgggattatagttgtgagccattgcacccag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462493 217 - 192294377 ggcatgttagccaagctggatttgaactcctgacctcaggtgatccacctgcctcgggctcccaaagtgctaggattacaagtgtgagccaccgcatcaggccAA-----------------agggatggg-gtctcactatcttatccaggctgatcttgaaatcacctcaagcatgcctttcactttggcttcccaaagtgctgggattatagttgtgagccattgcacccag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907355 217 + 9440265 ggcatgttagccaagctggatttgaactcctgacctcaggtgatccacctgcctcgggctcccaaagtgctaggattacaagtgtgagccaccacatcaggccAA-----------------agggatggg-gtctcactatcttatccaggctgatcttgaaatcacctcaagcatgcctttcactttggcttcccaaagtgctgggattatagttgtgagccattgcacccag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5646973 234 + 21915920 ggcatgtcagccaggctggatttgaactcctgacctcaggtgatccacctgcctcgggctcccaaagtgctaggattacaagtgtgagccaccgcatcaggccAAAAATATATTttttttgtagggatggg-gtctcactatcttgtccaggctgatcttgaaatcacctcaagcatgcctttcactttggcttcccaaagtgctgggattatagttgtgagccattgcacccag i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291425 234 - 90373283 ggcatgttagccaggctggatttgaactcctgacctcaggtgatccacctgcctcgggctcccaaagtgctaggattacaagtgtgagccactgcatcaggccAAAAATATAttttttttttagggatggg-gtctcactatcttgtccaggctgatcttgaaatcacctcaagcatgcctttcactttggcttcccaaagtgctgggattatagttgtgagccactgcacccag i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 597976 235 - 3237654 ggcatgttggccaggctggacttgaactcctgacctcaggtgatccacctgtctcgggctcccaaagtgctaggattacaagtctgagccaccgcatcaggccAAAAATATATTttttctgtagggatgggagtctcactattttgtccaggctgatcttgaaatcacctcgagcatgcctttcactttggcttcccaaagtgttgggattatagttctgagccattgcacccag i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e otoGar3.GL873528 18314951 0 - 38779656 C e dasNov3.JH568778 625849 1828 - 6883506 I e canFam3.chr31 11430148 0 + 39895921 C e manLeu1.NW_012107264v1 619592 206 + 1337817 M e nomLeu3.chr25 1578313 7745 + 32716333 I a score=106871.000000 s hg38.chr21_GL383578v2_alt 27346 24 + 63917 cccctggtaaattttt-aagttgtt s panTro5.chr21 864850 24 + 33445071 cccctggtaaattttt-aagttgtt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549495 24 + 46275980 ccCCTGGTAAATTTTT-AAGTTGTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461599 24 - 13858734 cccctcgtaaattttt-aagttgtt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654941 24 - 185818997 cctctggtaaattttt-aagttgtt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462710 24 - 192294377 cctctggtaaattttt-aagttgtt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907572 24 + 9440265 cctctggtaaattttt-aagttgtt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647207 24 + 21915920 ccTCTGGTAAATTttt-aagttgtt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291659 24 - 90373283 ccTCTGGTAAATTttt-aagttgtt i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 598211 24 - 3237654 cctctggtaaattttt-gagttgtt i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11430148 25 + 39895921 cctcttatggatttttaaagttgtt i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e otoGar3.GL873528 18314951 0 - 38779656 C e dasNov3.JH568778 625849 1828 - 6883506 I e manLeu1.NW_012107264v1 619592 206 + 1337817 M e nomLeu3.chr25 1578313 7745 + 32716333 I a score=723397.000000 s hg38.chr21_GL383578v2_alt 27370 162 + 63917 tctagtattatgctattgtaaacagc--------aatagcataatagatatttgactagatattcttggcatcagctttgtagaatatattcttagaagtacaattgctgggt----------cataaagcctacacatttttaaacaatttgtactcccatcaacaatgtaggagagca s panTro5.chr21 864874 162 + 33445071 tctagtattatgctattgtaaacagc--------aatagcataatagatatttgactagatattcttggcatcagctttgtagaatagattcttagaagtacaattgctgggt----------cataaagcctacacatttttaaacaatctgtactcccaccaacaatgtaggagtgca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549519 162 + 46275980 TCTAGTATTATGCTATTGTAAACAGC--------AATAGCATAATAGATATTTGACTAGATATTCTTGGCATCAGCTTTGTAGAATAGATTCTTAGAAGTACAATTGCTGGGT----------CATAAAGCCTACACATTTTTAAACAATCTGTACTCCCACCAACAATGTAGGAGTGCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461623 162 - 13858734 tctagtattatgctattgtaaacagc--------aatagcataatagatatttgactagatgttcttggcatcagctttgtagaatagattcttagaagtacaattgctgggt----------cataaagcctacacatttttaaacaatttgtactcccatcaacaatgtaggagagca i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152654965 161 - 185818997 tctagtattatgctattgtaaacagc--------aatagcataatagatatttgac-agatattctaggtatcagttttgtagaatagattcttagaagcacaattgctggat----------cataaagcctacgcatttttaaacaattcatactcccatcaacaatgtaggagagtg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462734 161 - 192294377 tctagtattatgctattgtaaacagc--------aatagcataatagatatttgac-agatattcttggtatcagttttgtagaatagattcttagaagcacaattgctggat----------cataaagcctacgcatttttaaacaattcatactcccatcaacaatgtaggagagtg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907596 161 + 9440265 tctagtattatgctattgtaaacagc--------aatagcataatagatatttgac-agatattcttggtatcagttttgtagaatagattcttagaagcacaattgctggat----------cataaagcctacgcatttttaaacaattcatactcccatcaacaatgtaggagagtg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647231 169 + 21915920 tctagtattatgctattgtaaacagcaatagcataatagcataatagatatttgac-agatattcttggcatcagtttcgtagaatagattcttagaagcacaattgctggat----------cataaagcctacgcatttttaaacaattcatactcccatcaacaatgtaggagagtg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291683 161 - 90373283 tctagtattacgctattgtaaacagc--------aatagcataatagatatttgac-agatattcttggcatcagttttgtagaatagattcttagaagcacaattgctggat----------cataaagcctacacatttttaaAcaattcatactcccatcaacaatgtaggagagtg i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 598235 161 - 3237654 tctggcgttatgctattgtaaacagc--------aatagcataatagacatttgac-agatattcttggcatcagttttgtagaatagattcttagaagcacaattgctgcat----------cataaagcctacacatttttaaacaattcgtattcccatcaacaatgtaagagagtg i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18314951 158 - 38779656 tccagtactgtaccattgcaaacaaA----------------------TTTTTGACTCAATATTCTTGGCATCAGATTCCTAGAACACAGTCTTAAAAGTATGATTGCTGAGttatatatatatatataaaatgtacatttttaaacaatttataGTCACAGGAACAATATAGGAGAATG i otoGar3.GL873528 C 0 I 2 s canFam3.chr31 11430173 129 + 39895921 ttcagcattttgctattgtaaacaaa--------a--------------ttttgactggctattcttttcgttactttcaaagagcagattcttagaagtatgattgctgggt----------catagagtatgcatattttta-------------------atGAATATAGGAGAGTT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e dasNov3.JH568778 625849 1828 - 6883506 I e manLeu1.NW_012107264v1 619592 206 + 1337817 M e nomLeu3.chr25 1578313 7745 + 32716333 I a score=740886.000000 s hg38.chr21_GL383578v2_alt 27532 128 + 63917 --tgttcttccactttcaaatcaaacctaaccttt--ttaattt-gccaagctgataca-ggaaaaatggtatctgactattatattgccttatattgcttccattataaaaattttctgttatatttctttct s panTro5.chr21 865036 129 + 33445071 --tgttctcccactttcaaatcaaacctaaccttt--taaattttgccaagctgataca-ggaaaaatggtatctgactattatattgccttatattgcttccattataaAAATTTTCTGTTATATTTCTTTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549681 129 + 46275980 --TGTTCTCCCACTTTCAAATCAAACCTAACCTTT--TTAATTTTGCCAAGCTGATACA-GGAAAAATGGTATCTGACTATTATATTGCCTTATATTGCTTCCATTATAAAAATTTTCTGTTATATTTCTTTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461785 129 - 13858734 --tgttctcccactttcaaatcaaacctaaccttt--ttaattttgccaagctgataca-ggaaaaatggtatctgactattatattgccttatattgcttccattataaAAATTTTCTGTTATATTTCTTTCA i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655126 129 - 185818997 --tgttctcccactaccaaatcaaacctaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatcagattattatattggcttatatttcttctattataaaatttttctgctatatttctttct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159462895 129 - 192294377 --tgttctcccactaccaaatcaaacctaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatcagattattatattggcttatatttcttctattataaaatttttctgctatatttctttct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907757 129 + 9440265 --tgttctcccactaccaaatcaaacctaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatcagattattatattggcttatatttcttctattataaaatttttctgctatatttctttct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647400 129 + 21915920 --tgttctcccacttccaaatcaaacctaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatcagattattatattggcttatatttcttctattataaaatttttctgctagatttctttct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291844 129 - 90373283 --tgttctcccacttccaaatcaaacctaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatctgattattatattggcttatatttcttctattataaaatttttctgctatgtttctttct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619798 129 + 1337817 --TGTTCTCCCACTTCCAAATCAAACCTaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatcagattattatattggcttatatttcttctattataaaatttttctgctatatttctttct i manLeu1.NW_012107264v1 M 206 C 0 s colAng1.NW_012116933v1 598396 129 - 3237654 --tgttatcccacttccaaatcaaacctaatcttt--ttaattttgccaagctgataca-ggaaaaatggtatgtgactattatattggcttatatttcttctattataaAATttttctgctatatttctttct i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18315111 123 - 38779656 --TGTTATCTGACTTTTAAATCAATCCTAATCTTT----AATTATGCCAAGCTGATACACAAAAAAATGGTATCTGATAATTA-----ACTTGTATTGCATCTGTTATAAAAATTTTCTCCCATACTTCTCTCT i otoGar3.GL873528 I 2 C 0 s canFam3.chr31 11430302 130 + 39895921 TTTGTTTCTCCATTTTTAAATCAA-CTTAATTTTTTTTTAATTTTGCAAAGCTGATACA-TGAAGAATGGTATCTGAC--TTATTTTGAATTGTAttgcctccattgtaaaaattttcttctgtatatctttct i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e dasNov3.JH568778 625849 1828 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=65153.000000 s hg38.chr21_GL383578v2_alt 27660 12 + 63917 agtatgattaca s panTro5.chr21 865165 12 + 33445071 AGTATGATTACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549810 12 + 46275980 AGTATGATTACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461914 12 - 13858734 AGTATGATTACA i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655255 12 - 185818997 agtatgattaca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463024 12 - 192294377 agtatgattaca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907886 12 + 9440265 agtatgattaca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647529 12 + 21915920 agtatgattaca i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291973 12 - 90373283 agtatgattaca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619927 12 + 1337817 agtatgattaca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 598525 12 - 3237654 agtatgattata i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18315234 12 - 38779656 CCTGTGATTATA i otoGar3.GL873528 C 0 I 22 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e dasNov3.JH568778 625849 1828 - 6883506 I e canFam3.chr31 11430432 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=854835.000000 s hg38.chr21_GL383578v2_alt 27672 183 + 63917 attttgttgttttcacatttacgtttttt---gttgttgagatggagttttgctcttgttgcccaggctggag---tgcaacggcacaatctcagctcaccatgacctctgcctcctgggttcaagcgattctctggactcagcctcctgagtagctggaattacagggattcgccaccatgcccagct s panTro5.chr21 865177 186 + 33445071 ATTTTGTTGTTTTCACATTTACAtttttt---gttgttgagatggagttttgctcttgttgcccaggctggaggagtgcaacggcacaatctcgtctcaccatgacctctgcctcctgggttcaagcgattctctggactcagcctcctgagtagctggaattacagggattcgccaccatgcccagct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14549822 186 + 46275980 ATTTTGTTGTTTTCACATTTACGtttttt---gttgttgagatggagttttgctcttgttgcccaggctggaggagtgcaacggcacaatctcgtctcaccatgacctctgcctcctgggttcaagcgattctctggactcagcctactgagtagctggaattacagggattcgccaccatgcccagct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 461926 183 - 13858734 ATTTTGTTGTTTTCACATTTACGtttttt---gttgttgagatggagttttgctcttgttgcccaggctggag---tgcaacggcacaatctcggctcaccatgacctctgcctcctgggttcaagcgattctccggactcagcctcctgagtagctggaattacagggattcgccaccatgcccagct i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655267 183 - 185818997 attttgttgttttcacatttacatttttc---gttgttgagatggagttttgctcttgttgcccaggctggag---tgcaatggcacgatcttggctcaccataacctctgcctcctgggttgaagcgattctcctgcctcagcctcctgagtagctaggattacagggattcgccaccatgcccaatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463036 183 - 192294377 attttgttgttttcacatttacatttttc---gttgttgagatggagttttgctcttgttgcccaggctggag---tgcaatggcacgatcttggctcaccataacctctgcctcctgggttgaagcgattctcctgcctcagcctcctgagtagctaggattacagggattcgccaccatgcccaatt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5907898 183 + 9440265 attttgttgttttcacatttacatttttc---gttgttgagatggagttttgctcttgttgcccaggctgcag---tgcaatggcacgatcttggctcaccataacctctgcctcctgggttgaagcgattctcctgcctcagcctcctgagtagctaggattacagggattcgccaccatgcccaatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647541 186 + 21915920 attttgttgttttcacatttacatttttcattgttgttgagatggagtttcgctcttgttgcccaggctggag---tgcaaaggcacgatcttggctcaccataacctctgcctccagggttgaagcgattctcctgcctcagcctcctgagtagctaggattacagggattcgccaccacgcccagtt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12291985 186 - 90373283 attttgttgttttcacatttacatttttcgttgttgttgagatggagttttgctcttgttgcccaggctggag---tgcaatggcatgatcttggctcaccataacctctacctcctgggttgaagcaattctcctgcctcagcctcctgagtagctaggattacagggattcgccaccatgcccagtt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 619939 186 + 1337817 attttgttgttttcacatttacatttttcattgttgttgagatggagttttgctcttgttgcccaggctggag---tgcaaaggcacgatcttggctcaccataacctctgcctccagggttgaagcgattctcctgcctcagcctcctgagtagctaggattacagggattcgccaccatgcccagtt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 598537 186 - 3237654 attttgttgtttttgcatttacatttttcgttgttgttgagatggagttttgctcttgttgcccaggctggag---tgcaatggcacgatcttggctcaccataacctctgcctcctgggttgaagcaattctcctacctcagcctcctgagtagctaggattacagggattcaccaccatgcccagtt i colAng1.NW_012116933v1 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e otoGar3.GL873528 18315246 22 - 38779656 I e dasNov3.JH568778 625849 1828 - 6883506 I e canFam3.chr31 11430432 0 + 39895921 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=450466.000000 s hg38.chr21_GL383578v2_alt 27855 99 + 63917 aattttgtatgtttagtagagacagggtttctccaaattggtcaggctggtctcgaactcccgacctcaggtgatccgcccgccttggcctcccaaagt s panTro5.chr21 865363 99 + 33445071 aattttgtatgtttagtagagacagggtttctccaaattggtcaggctggtctcgaactcccgacctcaggtgatccgcccgccttggcctcccaaagt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550008 99 + 46275980 aattttgtatgtttagtagagacagggtttctccaaattggtcaggctggtctcgaactcccgacctcaggtgatccgcccgccttggcctcccaaagt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462109 99 - 13858734 aattttgtatgtttagtagagacagggtttctccaaattggtcaggctggtctcgaactcccgacctcaggtgatccgcccgccttggcctcccaaagt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655450 99 - 185818997 tattttgtatgtttagtagagatggtgtttctccaaattggtcaggctggtctcaaactcccgacctcaggtgatccacccgccttgacctcccaaaat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463219 99 - 192294377 tattttgtatgtttagtagagacggtgtttctccaaattggtcaggctggtctcaaactcccgacctcaggtgatccacccgccttgacctcccaaaat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5908081 99 + 9440265 tattttgtatgtttagtagagacggtgtttctccaaattggtcaggctggtctcaaactcccgacctcaggtgatccacccgccttgacctcccaaaat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647727 99 + 21915920 tatttcgtatgtttagtagagacggtgtttctccaaattggtcaggctggtctcaaactcccgacctcaggtgatccacccgccttgacctcccaaagt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12292171 99 - 90373283 tattttgtatgtttagtagagacggggtttctccaaattggtcaggctggtctcaaactcccgacctcaggtgatccacacgccttgacctcccaaagt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 620125 99 + 1337817 tattttgtatgtttagtagagacggggtttctccaaattggtcaggctggtctcaaactcccgacctcaggtgatccacccgccttgacctcccaaagt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 598723 99 - 3237654 aattttgtatgtttagtagagacggggtttctccagattggtgaggctggtctcaaactcccgacctcaggtgatccacccgccttgacctcccaaagt i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11430432 5 + 39895921 aattt---------------------------------------------------------------------------------------------- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e otoGar3.GL873528 18315246 22 - 38779656 I e dasNov3.JH568778 625849 1828 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=176057.000000 s hg38.chr21_GL383578v2_alt 27954 38 + 63917 gctgggattacaggcatgagctaccaccacgcctggtc s panTro5.chr21 865462 38 + 33445071 gctgggattacaggcatgagctaccaccacgcctggtc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550107 38 + 46275980 gctgggattacaggcatgagctaccaccacgcctggtc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462208 38 - 13858734 gctgggattacaggcatgagctaccaccatgcctggtc i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655549 38 - 185818997 gctgggattacaggcatgagccatcaccacgcctggtc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463318 38 - 192294377 gctgggattacaggcatgagccatcaccacgcctggtc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5908180 38 + 9440265 gctgggattacaggcatgagccatcaccacgcctggtc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647826 38 + 21915920 gctgggattacaggcatgagccatcaccacgcctggtc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12292270 38 - 90373283 gctgagattacaggcatgagccatcaccacgcctggtc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 620224 38 + 1337817 gctgggattacaggcataagccatcaccatgcctggtc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 598822 38 - 3237654 gctgagattacaggcatgagccatcaccatgcctggtc i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18315268 12 - 38779656 ACTAAGAttata-------------------------- i otoGar3.GL873528 I 22 C 0 s canFam3.chr31 11430437 14 + 39895921 -----gactacaggtttgt------------------- i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e aotNan1.NW_018487195v1 6064371 452 + 9889416 I e cebCap1.NW_016107322v1 7016324 450 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19128251 2559 + 50472720 I e dasNov3.JH568778 625849 1828 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=281826.000000 s hg38.chr21_GL383578v2_alt 27992 28 + 63917 tgttttcacatttacattttaagtgatc s panTro5.chr21 865500 28 + 33445071 TGTtttcacatttacattttaagtgatc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550145 28 + 46275980 TGTtttcacatttacattttaagtgatc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462246 28 - 13858734 TGTTTTCACATTTACATTTTAAGTGATG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655587 28 - 185818997 TGTtttcacatttacattttaagtgatc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463356 28 - 192294377 tgttttcacatttacattttaagtgatc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5908218 28 + 9440265 tgttttcacatttaccttttaagtgatc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647864 28 + 21915920 tgttttcacatttacattttaagtgatc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12292308 28 - 90373283 tgttttcacatttacattttacgtgatc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 620262 28 + 1337817 TGTTTTCACATTTACATTTTAAGTGATC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 598860 28 - 3237654 tgttttcacatttacattttaagtgatc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19130810 28 + 50472720 tgttttcacatttacattttaagtgatc i calJac3.chr21 I 2559 C 0 s cebCap1.NW_016107322v1 7016774 28 - 14377064 tgttttcacatttacattttaagtgatc i cebCap1.NW_016107322v1 I 450 C 0 s aotNan1.NW_018487195v1 6064823 28 + 9889416 tgttttcacatttacattttaagtgatc i aotNan1.NW_018487195v1 I 452 C 0 s otoGar3.GL873528 18315280 25 - 38779656 ---tttcacatttacattttaagtggtc i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11430451 28 + 39895921 tgctttcacattcatgtcttagatgatt i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e dasNov3.JH568778 625849 1828 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=3643819.000000 s hg38.chr21_GL383578v2_alt 28020 449 + 63917 tgt--------------catttattacggtacaattgtgaaacaaggatccaactattctttttcatttgacaactaattgtctcagtactatttgttggataaaatattctttccccactgaaatgaaatgccagatttatcatttgtacattctaatatgtacctgcattattttatgagctttatttaggtcaagcgatctatttctctgttgttgtatctgtactatactttat--agtta-------------------------------AAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATTCCTGGAAGGCCACAAAC---CTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGCTCACTGGTCAGATTTCAAAAGG-AAAAAAAAAG---AGTCAAGCTTCTACTTGGAATACTTTAAAATTTATCTAAT-----AATTGGAA-------TGTATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCCTCTtcc------------------------------------------------tattcctttctt s panTro5.chr21 865528 447 + 33445071 tgt--------------catttattacggtacaattgtgaaacaaggatccaactattctttttcatttgacaactaattgtctcagtactatttgttggataaaatattctttccccactgaaatgaaatgccaaatttatcaTTTGTACATTCTAATATGTACTTGCATTATTTTATGAGCTATATTTAGGTCAAGCGATCTATTTCTCTGTTGTT--ATCTGTACTATACTTTAT--AGTTA-------------------------------AAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATTCCTGGAAGGCCACAAAC---CTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGCTCACTGGTCAGATTTCAAAAGC-AAAAAAAAAG---AGTCAAGCTTCTACTTGGAATACTTTAAAATTTGTCTAAT-----AATTGGAA-------TGTATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCCTCTTCC------------------------------------------------TATTcctttctt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550173 446 + 46275980 tgt--------------catttattacggtacaattgtgaaacaaggatccaactattctttttcatttgacaactaattgtctcagtactatttgttggataaaatattgtttccccactgaaatgaaatgccaaatttatcaTTTGTACATTCTAATATGTACTTGCATTATTTTATGAGCTTTATTTAGGTCAAGCGATCTATTTCTCTGTTGTT--ATCTGTACTATACTTTAT--AGTTA-------------------------------AAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATTCCTGGAAGGCCACAAAC---CTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGCTCACTGGTCAGATTTCAAAAGG--AAAAAAAAG---AGTCAAGCTTCTACTTGGAATACTTTAAAATTTATCTAAT-----AATTGGAA-------TGTATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCCTCTTCC------------------------------------------------TTTTcctttctt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462274 449 - 13858734 TGT--------------CATTTATTACAGTACAATtgtgaaacaaagatccaactattctttttcatttgacaactaattgtctcagtactatttgttggataaaatattctttccccactgaaatgaaatgccaaatttatcatttgtacattctaatatgtacttgcgttactttatgagctttatttaggtcaagcgatctatttctctgttgttgtatctgtactatactTTAT--AGTTA-------------------------------AAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATTCCTGGAAGGCCACAAAC---CTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGCTCACTGGTCAGATTTCAAAGGG-AAAATAAAAG---AGTCAAGCTTCTACTTGGAATACTTTAAAATTTATCTAAT-----AATTGGAA-------TGTATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCCTCTtcc------------------------------------------------tattcctttctt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152655615 497 - 185818997 tgt--------------catttattatggtaccattgtgaaacaaggatccaactattctttttcatttgacaactaactgtctcagtactatttgttggataaaatattctttccccattgatatgaaatgccaaatttatcatttgtagattccagtatgtacttgcattattttatgagctttatttgggtcaagtgatctatttctctgttgttgtatctgtactatactttat--agtta-------------------------------cAACA--AAGAAATACG---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTCCTGGGAGGCCACAAACTTTCTCCTTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAAGTTTGTAGCTTTTGTGCCCACTCACCAAATTTCAAAAAGAAAAAGGAAAG---AGTCAAGCTTCTACTGGGAATATTTCTACATTTAT-TAAT-----AATTGGAA-------TATATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCTTCTTCCTTTCTGTGCTTTTCtaaggctatataggtttcttcttacagttct---tattcctttttg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463384 497 - 192294377 tgt--------------catttattatggtaccattgtgaaacaaggatccaactattctttttcatttgacaactaactgtctcagtactatttgttggataaaatattctttccccattgatatgaaatgccaaatttatcatttgtagattccagtatgtacttgcattattttatgagctttatttgggtcaagtgatctatttctctgttgttgtatctgtactatactttat--agtta-------------------------------cAACA--AAGAAATATG---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTCCTGGGAGGCCACAAACTTTCTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAAGTTTGTAGCTTTTGTGCCCACTCACCAAATTTCAAAAAGAAAAAGGAAAG---AGTCAAGCTTCTACTGGGAATATTTCTACATTTAT-TAAT-----AATTGGAA-------TATATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCttcttcctttctgtgcttttctaaggctatataggtttcttcttacagttct---tattcctttttg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5908246 497 + 9440265 tgt--------------catttattatggtaccattgtgaaacaaggatccaactattctttttcatttgacaactaactgtctcagtactatttgttggataaaatattctttccccattgatatgaaatgccaaatttatcatttgtagattccagtatgtacttgcattattttatgagctttatttgggtcaagtgatctatttctctgttgttgtatctgtactatactttat--agtta-------------------------------cAACA--AAGAAATACG---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTCCTGGGAGGCCACAAACTTTCTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAAGTTTGTAGCTTTTGTGCCCACTCACCAAATTTCAAAAAGAAAAAGGAAAG---AGTCAAGCTTCTACTGGGAATATTTCTACATTTAT-TAAT-----AATTGGAA-------TATATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCTTCTTCCTTTCTGTGCTTTTCtaaggctatataggtttcttcttacagttct---tattcctttttg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5647892 497 + 21915920 tgt--------------catttattatggtaccattgtgaaacaaggatccaactattctttttcatttgacaactaattgtctcagtactatttgttggataaaatattctttccccattgatatgaaatgccaaatttatcatttgtagattccagtatgtacttgcattattttatgagctttatttgggtcaagtgatctatttctctgttgttgtatctgtactatactttgt--agtta-------------------------------cAGCA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTCCTGGGAGGCCACAAACTTTCTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGCCCACTCACCAAATTTCAAAAAGAAAAAGGAAAG---AGTCAAGCTTCTACTGGGAATATTTCTACATTTAT-TAAT-----AATTGGAA-------TATGTCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCTTCTTCCTTTCTGTGCTTTTCTAAGGCTATATAGGTTTCTTCTTACTGTTCT---TATTCCTTTTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12292336 492 - 90373283 tgt--------------catttattatggtaccattgtgaaacaaggatccaactattctttttcatttgacaactaattgtctcagtactatttgttggataaaatattctttccccattgatatgaaatgccaaatttatcatttgtagattccagtatgtacttgcattattttatgagctttatttgggtcaagtgatctatttctctgttgttgtatctgtacta-----tat--agttA-------------------------------CAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTCCTGGGAGGCCACAAACTTTGTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGCCCACTCACCAAATTTCAAAAAGAAAAAGGAAAG---AGTTAAGCTTCTACCGGGAATATTTCTACATTTAT-TAAT-----AATTGGAA-------TATATCTTACTGGGATT--GTATTTTCAATTGCGAAAAGGATATGCTTCTTCCTTTCTGTGCTTTTCtaaggctatataggtttcttcttacagttct---tattcctttttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 620290 497 + 1337817 TGT--------------CATTTATTATGGTACCATTGTGAAACAAGGATCCAACTATTCTTTTTCATTTGACAACTAATTGTCTCAGTACTATTTGTTGGATAAAATATTCTTTCCCCATTGATATGAAATGCCAACTTTATCATTTGTAGATTCCAGTATGTACTTGCATTATTTTATGAGCTTTATTTGGGTCAAGTGATCTATTTCTCTGTTGTTGTATCTGTACTATACTTTAT--AGTTA-------------------------------CAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTCCTGGGAGGCCACAAACTTTCTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTTCCCACTCACCAAATTTCAAAAAGAAAAAGGAAAG---AGTCAAGCTTCTACTGGGAATATTTCTACATTTAT-TAAT-----AATTGGAA-------TATGTCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCTTCTTCCTTTCTGTGCTTTTCtaaggctatataggtttcttcttacagttct---tattcctttttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 598888 498 - 3237654 tgt--------------catttattatggtaccattgtgaaacaaggatccaactattatttttcgtttgacaactaattgtctcagtactatttgttggataaaatattctttccccattgatatgaaatgccaaatttatcatttgtagattccaatatgtacttgcattattttatgagctttatttgggtcatgtgatctatttctctgttgttgtatctgtactatactttat--agtta-------------------------------cAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------CTTAAGTTCCTGGGAGGCCACAAACCTTCTCATTATT-ATTT-------------------------------------------------------------------------------------------------TCAAACATTTTGTAGCTTTTGTGCCCACTCGCCAAATTTCAAAAAGAAAAAGAAAAG---AGTCAAGCTTCTACTTGGAATACTTCTACATTTATCTAAT-----AATTGGAA-------TATATCTTACTGGGATT--GTATTTTCAATTGGGAAAAGGATATGCTTCTTCATTTCTGTGCTTTTGtaaggctatataggtttcctcttacagttct---tattcctttttt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19130838 483 + 50472720 tgt--------------catttattatagtacaattgtgaaacaataatccaactattctttttaatttgacaactaattgtgtcaatactacttgttgggtaaaatattttttctccattgatatgagatgccaaatctatcatttatagattctaatatatactcgcattattttatgagctttgttttagtcaagtgatctacttctctgtTGTAGTAT-----TTATACTTTAT--AGTTA-------------------------------CAACA--AAGAAATGCA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATTCCTGGTAGGCCACAAAC----CTATTAT---TTT-------------------------------------------------------------------------------------------------TCAAAAACTTTGTAGCGTTTGTGTTGACTTGTCAGATTTCAAAAAAAAAGAGTCA----------AGTTTCTACTTGGAATACTTTTAAACTTATCTAAT-----AATTGGAAAAATATTTATATCTGAATGGGATT--GTATTTTCATTTGAGAAAATGGCATGCTTCTTCCTATCTGTTTTTTTGT-AGGCTATCCAGGT---TTCTtaaagattt---tattaatttctt i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7016802 501 - 14377064 tgtcatttattatggtacatttattatggtacaattgcgaaacaagagtccaactattctttttcatttgacaactaattgcatcaatactacttgttggataaaatattttttctccattgaTATGAAATGCCAAATTTATCATTTATAGATTCTAATATATACTTGCATTATTTTATGAGCTTCGTTTTAGTCAAGTGACCTGCTTCTCTGTTGTTGTAT-----TTATATTTTAT--AGTTA-------------------------------CAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTGAAATTCCTGGTAGGCCACAAAC----CTATTCT---TTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTGTTGTGTCGACTTGTCAGATTTCaaaaaaaaaaaaaaaaa---aG---AGCCTCTACTTGGGATACTTTTAAATTTATCTAAT-----AATTGGAAAAATATTTATATCTGAATGGGATT--TTATTTTCATTTGAGAAAATGGTATGCTTCTTCCTATCTGTCTTTTTGT-AGGCTATCCAGGT---TTCTtaaagattt---tattcctttctt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6064851 484 + 9889416 tgt--------------catttattacggtacaattgtgaaacaagaatccaactattctttttcatttgccaactaattgtatcaatacttcttgttggataaaatattttttctccattgaTATGAAGTGCCAAATTTATCATTTATAGATTCTAATATATACTTGCATTATTTTATAAGCTTCCTTTTAGTCAAGTGATCTGCTTCTCTGTTGTTGTAT-----TTATACTTTAT--AGTTA-------------------------------CAACA--AAGAAATACA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATTCCTGGTAGGCCACGAGC----CTATTAT---TTT-------------------------------------------------------------------------------------------------TCAAAAATTTTGTAGCTTTTGTGTCGACTTGTCAGATTTCAAAAAAAAAAAAAGGCA--------AGTTTCTACTTGGAATACTTTTAAATTTATCTAAT-----AATTGG----ATATTTATATCTGAATGGGATT--GTATTTTCATTTGAGAAAATGGTATGCTTCTTCCTATCTGTCTTTTTGT-AGGCTATCCaggtttcttcttaaagattt---tattcctttctt i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18315305 594 - 38779656 tgt--------------catttat---ggaataggtgtgatacaaggatctaactcttctttttcataagacaactaattgtctcagtactatttattgaggaaaacatcctttccctactgatatgaaatgccacatttatcatctataaattacaatatgtacttacattactttttgagctttattttagtccagtgctcgacttctccatTACTGTATCTGTACTAGACCTGAT--ATTCC-------------------------------CAATAACAGGACATATA---------------------------------------------------------------------------------------------------------------------------------------TTTAAATATCTGGTAGGCCACATGCTTTCTTCCTTTT-TTTTTTAAATTAAATCATAGCTGTGTACATTAATGCAATCACGGGTACAGTGTGATGTTTTCATATACAATTTAGAATACTCTCATCAAACTTATGCTTTCTCAAACTTTTTGTAGTTTTGTGTCCCACTTGTTATATTTCAAAAAG--AAAAAAAAG---AGTCAAAGTTTTGTTTGGAATATCATTAAATTTATCTAAT------ATTGGAAAAAGATGTATATTTGAATAGAGTTAAGTCTTTCTATTTATGAAAATGATATGTTTCT----ATTTGTCTTTTTGTAAGATTGTATAGGTTTCTTCTTACGGTT-----TAATTTTTTCTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75808525 494 + 98207768 TGC--------------CATTGAGTACTGTATAGAC-TGATAAAGAAATCCAACTATTC-TTTTCATATAATGACTAATT-TTTAAATTCTATGTATTGAGTAAAATATGTATTTCCTACTAATCTGGAATGTCAGATTTATCATTTATAGTTCCTGATCAGTA-TTGTATTATTTC-TGAACTTAATTGTGGCCCACTGACTTACTTGTATCTTCTTGTGTTTATTCTAGATGTTATTCCACAA-------------------------------CAACA--CAGAAATCCA---------------------------------------------------------------------------------------------------------------------------------------TTTAAGTATCTGTCAGGTCACATAGCTTCTTGACATTCTTTT-------------------------------------------------------------------------------------------------TCAATATTTTCTTAGCTTTTGTGTCTCCCTGTC-TATTTTACAAAACAAAATTGAAGCCACATCAAGCTTCTGTTTGGAATACCATTGCATTTATCTAAAGGTGGAAATGGAC-------TTTGTATGAATGGAGTTATGTCTTTGTAGTTGGGAAAACAGTGAATCCTTTTC--------------CAATGCAATGTAGACTCTTACTAAAGAGTTTTGATTGTTTTTTCTT i mm10.chr16 N 0 C 0 s canFam3.chr31 11430479 616 + 39895921 gga--------------catttattgcagtataagcataatatcagtattcaattattctttttcatatgacaactaattgtctcaatacccagtattgaaataaaactcctttccgctatgatgtgaaatcctgaatttgtccgatatggattctaatatatgctgacattgtttc-tgaactctatgctagtccagtgaccaatttctctattcttataccTGTATAAGATTTATT--TATTAAtttttaagattttatctatttattcatgagagaca--gagagaggcagagacgtaggcagagggataagcaggctcttcgcagggagctcgatgtgagacttgatcctggatccaggatcatcccctgagctgaaggcagatgttcaaccactgagccacccaggcattccTATATAAGATTTACAGTTATCTGGTGAGCCACA-----TCTCATTATT--TTT-------------------------------------------------------------------------------------------------TCAAAAATTTCTTAGTTTTTGTATCCACTTGTCAGATTTTAAAAAGAAAAAAAAAAC---AGTCAAGCTTCTGTTTAGAATATCATTGCATTTACCTAAT-----AATATAAA--TCCTTTATAACTAGATGGAGTTAAGTCTTCTTATCTGGGAAA---GCATGTTTCTTTCTCTGTGTTCTTT------------------------------------------------ i canFam3.chr31 C 0 I 1343 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e dasNov3.JH568778 625849 1828 - 6883506 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=850320.000000 s hg38.chr21_GL383578v2_alt 28469 121 + 63917 gttaaatttatacctaggt-attatcaaattttgttactaatgtgaattagatttttctctc--ttttttcccttttg-----------tatgttacttttacttatagag---aaaaactattgatat------------------------ttgtaaatt s panTro5.chr21 865975 121 + 33445071 gttaaatttatacctagat-attatcaaattttgttactaatgtgaattagatttttctctc--ttttttcccttttg-----------tatgttacttttactcatagag---aaaaactattgatat------------------------ttgtaaatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550619 121 + 46275980 gttaaatttatacctagat-attatcaaattttgttactaatgtgaattagatttttctctc--ttttttcccttttg-----------tatgttacttttactcatagag---aaaaactattgatat------------------------ttgtaaatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462723 121 - 13858734 gttaaatttatacctaggt-attatcaaattttgttactaatgtgaattagatttttctctc--ttttttcccttttg-----------tatgttacttttactcgtagag---aaaaactattgatat------------------------ttgtaaatt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656112 121 - 185818997 gttaaatttatacctaggt-attatcaaattttgttactaacttgaattagatttttctctc--ttttttcacttttg-----------catgttagctttactcatagag---aaaaactattgatat------------------------ttgtgtatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159463881 122 - 192294377 gttaaatttatacctaggt-attatcaaattttgttactaacttgaattagatttttctctc-tttttttcacttttg-----------catgttagctttactcatagag---aaaaactattgatat------------------------ttgtgtatt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5908743 122 + 9440265 gttaaatttatacctaggt-attatcaaattttgttactaacttgaattagatttttctctc-tttttttcacttttg-----------catgttagctttactcatagag---aaaaactattgatat------------------------ttgtgtatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648389 122 + 21915920 GTTAAATTTATACCAAGGT-ATTATCAAATTTTGTTACTAACTTGAATTAGATTTTTCTCTC-TTTTTTTCACTTTTG-----------CATGTTACCTTTACTCGTAGAG---AAAAACTATTGATAT------------------------TTGTGTATT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12292828 122 - 90373283 gttaagtttatacctaggt-attatcaaattttgttactaacctgaattagatttttctctc-tttttttcacttgtg-----------cgtgttacttttactcatagag---aaaaactattgatat------------------------ttgtgtatt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 620787 122 + 1337817 gttaaatttatacctaggt-attatcaaattttgttactaacttgaattagatttttctctc-tttttttcacttttg-----------catgttacctttactcgtagag---aaaaactattgatat------------------------ttgtgtatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599386 120 - 3237654 gttaaatttatatctaggt-attatcaaattttgttactaacctgaattagatttttctctc--ttttttcacttttg-----------catgttactttta-tcatagag---aaaaactattgatat------------------------ttgtgtatt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131321 123 + 50472720 gttaaatttatacctaggt-attatcaaattatgttactaatgttaattatatttttctctcatttctattactttct-----------taggtaacttttactcatagag---aaaaactattgatat------------------------ttgtatatt i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7017303 123 - 14377064 attaaatttatacctaggt-attatcaaattttgttactaatgttaattagatttttctctcattttttttactttct-----------taggtaacttttactcatagag---aaaaactattgatat------------------------ttgtatatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6065335 118 + 9889416 gttaaatttatacctaggt-attatcaaattttgttactaatgttaattagatttttctctcattttt-----ttact-----------taggtaacttttactcatagag---aaaaactattgatat------------------------ttgtatatt i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18315899 90 - 38779656 CTTAAATTTATACCCAGATGATTAACAGCTTTTGTTCCCACTGCAAATTAGA-CTTTCTCTCATTTTATTTTCC-------------------------------------------AACT-TTCTTAT------------------------TTTT---TT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809019 149 + 98207768 GTTAATTTCATAC-----T-ACTGT----TTTTGTTC---ATGTAAATTGAATCTTTACAACATGCTTATAGTTTTTGATTAATCAAGAAGTACTGATTGCTTTCAAAGAGTTAATGAACAATTGATATGCCCCTGTGCATTTTCCTTTTCGATTATATATT i mm10.chr16 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e dasNov3.JH568778 625849 1828 - 6883506 I e canFam3.chr31 11431095 1343 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1249587.000000 s hg38.chr21_GL383578v2_alt 28590 149 + 63917 ttcttatatacagcaactttatagaa-----cttatt---agctctaaaattattttagttatttattttggattacaagggcatataa-ttacattatctgcaaatgataatagctttatctcttctttttcaaAATATAGTCAA--TTAGTGAATGCA s panTro5.chr21 866096 149 + 33445071 ttcttatatacagcaactttatagaa-----cttatt---agttctaaaattattttagttatttattttggattacaagggcatataa-ttacattatctgcaaatgataatagctttatctcttctttttcaaAATATAGTCAA--TTAGTGAATGCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550740 149 + 46275980 ttcttatatacagcaactttatagaa-----cttatt---agttctaaaattattttagttatttattttggattacaagggcatataa-ttaccttatctgaaaatgataatagctttatctcttctttttcaaAATATAGTCAA--TTAGTGAATGCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462844 149 - 13858734 ttcttatatacagcaactttatagat-----cttact---agttctaaaattattttagttatttattttggattacaagggcatataa-ttacattatctgcaaatgataatagctttatctcttctttttcaaAATATAGTCAA--TTAGTGAATGCA i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656233 149 - 185818997 ttttaatagagagcaactttatagga-----cttcat---agttctaaaattattttagttatttattttggattacaaaggcatatac-ttacattatctgcaaatgataatagctctatctcttctttttcaaAATGTAATCAA--TTAGCGAATGCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464003 149 - 192294377 ttttaatagagagcaactttatagga-----cttcat---agttctaaaattattttagttatttattttggattacaaaggcatatac-ttacattatctgcaaatgataatagctctatctcttctttttcaaaatgtaatcaa--ttagcaaatgca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5908865 149 + 9440265 ttttaatagagagcaactttatagga-----cttcat---agttctaaaattattttagttatttattttggattacaaaggcatatac-ttacattatctgcaaatgataatagctctatctcttctttttcaaAATGTAATCAA--TTAGCGAATGCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648511 149 + 21915920 TTTTTATAGAGAGCAACTTTATAGGA-----CTTCAT---AGTTCTAAAATTATTTTAGTTATTTATTTTGGATTACAAAGGCATATAC-TTACATTATCTGCAAATGATAATAGCTCTATCTCTTCTTTTTCAAAATGTAATCAA--TTAGCAAATGCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12292950 149 - 90373283 tttttatagagagcaactttatagga-----cttcat---agttctaaaattattttagttatttattttggattacaaaggcatatac-ttacattatctgcaaatgataatagctttatctcttctttttcaaAATGTAATCAA--TTAGCGAATGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 620909 149 + 1337817 tttttatagagagcaactttatagga-----cttcat---agttctaaaattattttagttatttattttggattacaaaggcatatac-ttacattatctgcaaatgataatagctctatctcttctttttcaaAATGTAATCAA--TTAGCGAATGCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599506 149 - 3237654 tttttatagagagcaactttatagga-----cttcat---agttctaaaattattttggttatttatttttgattacaaaggcatatac-ttacattatctgcaaatgataatagctttatctcttctttttcaaAATGTAATCAA--TTAATGAATGCA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131444 146 + 50472720 ttcttatatagagcaactttataaat--------gtt---aggaataaaattattttagttatttattttgaattacaaagatatataa-ttacatcacctgcaaatgataatagttttatctcttctttttcaaAATGTAATTAA--TTAGCGAATGCA i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7017426 144 - 14377064 atcttatatagagcaactttataaac--------att---agttataaaattattt--gttatttattttgaattacaaagatatataa-ttatatcacctacaaatgataatagctttatcttttctttttcaaAATGTAATCAA--TTAGTGAATGCA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6065453 148 + 9889416 ttcttatatagagctactttataaac------ttatt---aggtataaaattattttagttatttattttgaattacaaagatatataa-ttacatcacctgcaaatgataatagttttatctcttctttttcaaaatgtaatcaa--ttagtgaatgca i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18315989 150 - 38779656 TATTCTTATGGAGCCACCTTATAGAA-----CTTAGA---AATTCTAAAATTATTTTAGTTATTTCCTTTTGATGGAATAGGCATAAAA-TTACAACATTGGAAAATGATAATAGTTTT-TCTCTTCTTTTAAAAAAATGTATCAATTTTAGAGAATTCT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809168 143 + 98207768 TTATCACAGAGAGTCACTTTATGTAA-----CTTATTTACTGGTTGAAAATTATTT--------TATTTTG--TCACAAACCCATAAAAGTTACATGATCTGAAAGTGATAGTACCTTGTTTGCTTCTTCTCTGAAGTCTAGTCAC--TTAGTGAAGTTT i mm10.chr16 C 0 C 0 s dasNov3.JH568778 627677 147 - 6883506 ttcttatataagtttacttttaaaaaacttacatgtt---atttctaaaatta---gagtcgtttaccttggattctctagtcataaaa-ttacattatctgcaaatgatga---atttgtctcttcttttt-aagctgtaatcca--ttagcaaactct i dasNov3.JH568778 I 1828 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16829525 2214 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e canFam3.chr31 11431095 1343 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=345028.000000 s hg38.chr21_GL383578v2_alt 28739 31 + 63917 TTTCCAAAATTTGTTTCATGAGCTAAACTCT s panTro5.chr21 866245 31 + 33445071 TTTCCAAAATTTGTTTCATGAGCTAAACTGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550889 31 + 46275980 TTTCCAAAATTTGTTTCATGAGCTAAACTCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 462993 31 - 13858734 TTTCCAAAATTTGTTTCATGAGCTAAACTCT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656382 31 - 185818997 TTTCCAAAATTTGTTTCCTGAGCTAACCTCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464152 31 - 192294377 tttccaaaatttgtttcctgagctaacctct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909014 31 + 9440265 TTTCCAAAATTTGTTTCCTGAGCTAACCTCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648660 31 + 21915920 TTTCCCAAATTTGTTTCGTGAGTTAACCTCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293099 31 - 90373283 TTTCCAAAATTTGTTTCATGAGCTAACCTCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621058 31 + 1337817 TTTCCCAAATTTGTTTCATGAGCTAACCTCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599655 31 - 3237654 TTTCCAAAATTTGTTTCATGAGCTAACCTCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131590 31 + 50472720 TTTGCAAAATTTGTTTCATGTGCTAAACTCT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7017570 31 - 14377064 TTTGTGAAATTTGTTCCATGAGCTAAACTCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6065601 31 + 9889416 tttgcaaaatttgttctgtgagctaaactct i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16831739 31 + 47401472 TTTCCAAAATTTGTTGCATGAGCTAAACTCT i micMur3.chr31 I 2214 I 3699 s otoGar3.GL873528 18316139 31 - 38779656 TTTTCAAAATTTTGTGCATTAGCTAAACTCT i otoGar3.GL873528 C 0 I 5 s mm10.chr16 75809311 29 + 98207768 TTTCCTTA--CCGTAACGTAAGCTAAATGTT i mm10.chr16 C 0 C 0 s canFam3.chr31 11432438 31 + 39895921 TTTCTGAAACATGTTGCATGAGCTAAGCTCT i canFam3.chr31 I 1343 C 0 s dasNov3.JH568778 627824 31 - 6883506 tttccaaaatttgttgtattagctaaactct i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1036400.000000 s hg38.chr21_GL383578v2_alt 28770 119 + 63917 --ATATACTATTGGTGAC------------A----GTCG-TACCTGTCTG----GCTCCTGACTTTATT--G-G-AACGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATAAATATATTTT-TGATGTTTCAGAAATTG s panTro5.chr21 866276 119 + 33445071 --ATATACTATTGGTGAC------------A----GTCG-TACCTGTCTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATAAATATATTTT-TGATGTTTCAGAAATTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14550920 119 + 46275980 --ATATACTATTGGTGAC------------A----GTCG-TACCTGTCTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATAAATATATTTT-TGATGTTTCAGAAATTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463024 119 - 13858734 --ATATACTATTGGTGAC------------A----GTCA-TACCTGTCTG----GCTCCTGACTTTATT--G-G-AACGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATAAATATATTTT-TGATGTTTCAGAAATTG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656413 119 - 185818997 --GTATACTATTGGTGAC------------A----GTCA-TAGCTGTTTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATGAATACATTTT-TGATGTTTCAGAAATTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464183 119 - 192294377 --gtatactattggtgac------------a----gtca-tagctgtttg----gctcctgactttatt--g-g-aatgcttttagtataccaccttt-taatatTTCC----AGTTTCTGATGAATACATTTT-TGATGTTTCAGAAATTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909045 119 + 9440265 --GTATACTATTGGTGAC------------A----GTCA-TAGCTGTTTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATGAATACATTTT-TGATGTTTCAGAAATTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648691 119 + 21915920 --ATATACTATTGGTGAC------------A----GTCA-TAGCTGTTTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATGAATACATTTT-TGATGTTTCAGAAATTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293130 119 - 90373283 --ATATACTATTGGTGAC------------A----GTCA-TACCTGTTTG----GCTCTTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATGAATACATTTT-TGATGTTTCAGAAATTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621089 119 + 1337817 --GTATACTATTGGTGAC------------A----GTCA-TAGCTGTTTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCACCTTT-TAATATTTCC----AGTTTCTGATGAATACATTTT-TGATGTTTCAGAAATTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599686 118 - 3237654 --AAATACTATTAGTGAC------------A----GTCA-TACCTGTTTG----GCTCCTGACTTTATT--G-G-AATGCTTTTAGTATACCTCCTTT-TAATATTTCC----AGTTTCTGATAAATATA-TTT-TGATGTTTCAGAAATTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131621 118 + 50472720 --ATATACTATTGGTGAC------------A----GTCA-TACCTGTCTG----GCTCCTGACTTTATT--G-G-AATGCCTTTAGTATACGA-CTTT-TAATATTTCC----GGTTTCTGATAAATATATTTT-TGATGTTTCAGAAATTG i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7017601 118 - 14377064 --ATATACTATTGGTGAC------------A----GTCA-TACTTGTCTG----GCTTCTGACTTTATT--G-G-AATGCTCTTAGTATACCA-CTTT-TAATATTTCC----AGTTTCTGATAAATACATTTT-TGATGTTTCAGAAATTG i cebCap1.NW_016107322v1 C 0 I 66 s aotNan1.NW_018487195v1 6065632 118 + 9889416 --atatactattggtgac------------a----gtca-tacctgtctg----gttcctgactttatt--g-g-aatgcttttagtatacca-cttt-taaTATTTCC----AGTTTCTGATAAATATATTTT-TGATGTTTCAGAAATTG i aotNan1.NW_018487195v1 C 0 I 62 s otoGar3.GL873528 18316175 108 - 38779656 --CTAAACTGTCAGTGAG------------A----TTCA-TTCATGTTTG----CCT--TGA---------G-A-GATGCTTTTAGTATATCA-CTTT-TAATATTTGC----TATTTCTGATAAATAGA-CTA-TGATGATTAGGAAATTA i otoGar3.GL873528 I 5 C 0 s mm10.chr16 75809340 101 + 98207768 --CCGGACTCTTGGAGAC------------A----TTCAGTCAATGTCTT----GT---AGATTTTGTT--G-GTGACTCTCTTAGTACAAGATTGTT-TTGTGTTTCC----CTCGTCTGATCTACATAT------ATG------------ i mm10.chr16 C 0 C 0 s canFam3.chr31 11432469 131 + 39895921 --CCAAACTATTAGTAAC------------CCTCTGTTA-TATTTATTTGTATTGCTCTTGGCTTCATT--GCA-GATCCTTTTAGTATGTCACCTTTCTAATATTTTCTCTTGGTTTCTTTTATATACTTTTT-TTTTTTTTAAAGTAA-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 627855 122 - 6883506 ccatat----ttggtgaccctcaatccctta----atta-tactggtctt----actgctcgctttattggg-g-gatgc--------------cttt-taatatttcctgttggttcatgataaatattccttatgatgtttaggaagttg i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=38875.000000 s hg38.chr21_GL383578v2_alt 28889 6 + 63917 TCTtta s panTro5.chr21 866395 6 + 33445071 TCTtta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551039 6 + 46275980 TCTtta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463143 6 - 13858734 TCTtta i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656532 6 - 185818997 TCTtta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464302 6 - 192294377 TCTtta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909164 6 + 9440265 TCTtta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648810 6 + 21915920 TCTtta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293249 6 - 90373283 TCTtta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621208 6 + 1337817 TCCtta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599804 6 - 3237654 TCTtta i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131739 5 + 50472720 -CTTTT i calJac3.chr21 C 0 C 0 s mm10.chr16 75809441 6 + 98207768 TCTGTG i mm10.chr16 C 0 C 0 s canFam3.chr31 11432600 6 + 39895921 TCTCTA i canFam3.chr31 C 0 I 130 s dasNov3.JH568778 627977 5 - 6883506 tcttt- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18316283 0 - 38779656 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=21294.000000 s hg38.chr21_GL383578v2_alt 28895 3 + 63917 tta s panTro5.chr21 866401 3 + 33445071 tta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551045 3 + 46275980 tta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463149 3 - 13858734 tta i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656538 3 - 185818997 tta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464308 3 - 192294377 tta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909170 3 + 9440265 tta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648816 3 + 21915920 tta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293255 3 - 90373283 tta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621214 3 + 1337817 tta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599810 3 - 3237654 tta i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131744 3 + 50472720 TTA i calJac3.chr21 C 0 C 0 s mm10.chr16 75809447 3 + 98207768 TTA i mm10.chr16 C 0 I 26 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18316283 0 - 38779656 C e dasNov3.JH568778 627982 0 - 6883506 C e canFam3.chr31 11432606 130 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=3652.000000 s hg38.chr21_GL383578v2_alt 28898 1 + 63917 t s panTro5.chr21 866404 1 + 33445071 t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551048 1 + 46275980 t i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463152 1 - 13858734 t i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656541 1 - 185818997 t i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464311 1 - 192294377 t i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909173 1 + 9440265 t i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648819 1 + 21915920 t i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293258 1 - 90373283 t i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621217 1 + 1337817 t i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599813 1 - 3237654 t i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131747 1 + 50472720 A i calJac3.chr21 C 0 I 1 e mm10.chr16 75809450 26 + 98207768 I e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e otoGar3.GL873528 18316283 0 - 38779656 C e dasNov3.JH568778 627982 0 - 6883506 C e canFam3.chr31 11432606 130 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=70775.000000 s hg38.chr21_GL383578v2_alt 28899 15 + 63917 tattattatt---------gttat s panTro5.chr21 866405 18 + 33445071 tattattatt------attgttat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551049 24 + 46275980 tattattattattattattgttat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463153 18 - 13858734 tattattatt------attgttat i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656542 18 - 185818997 tattcttata------attgttat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464312 18 - 192294377 tattattata------attgttat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909174 18 + 9440265 tattattata------attgttat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648820 18 + 21915920 tattattata------attgttat i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293259 18 - 90373283 tattattata------attgttat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621218 18 + 1337817 tattattata------attgctat i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599814 18 - 3237654 tattattata------attgttat i colAng1.NW_012116933v1 C 0 C 0 s dasNov3.JH568778 627982 12 - 6883506 ------tcct------attgctat i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75809450 26 + 98207768 I e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19131748 1 + 50472720 I e otoGar3.GL873528 18316283 0 - 38779656 C e canFam3.chr31 11432606 130 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1154386.000000 s hg38.chr21_GL383578v2_alt 28914 252 + 63917 tattttgagatggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctccagggttcgagcaattctccctgcctcagcctcccgagtagctgagatgacagacgcctgtcaccacacctggctaaatttttgtatatttagtagagatgaggttctgccatgttggccagactggtcttgaactcctgacctcaggtgatccacccacctcagcctcccaa s panTro5.chr21 866423 252 + 33445071 tattttgagatggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctccagggttcgagcaattctccctgcctcagcctcccgagtagctgagattacagatgcctgtcaccacacctggctaaatttttgtatatttagtagagatgaggttctgccatgttggccagactggtcttgaactcctgacctcaggtgatccactcacctcagcctcccaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551073 252 + 46275980 tattttgagatggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctccagggttcgagcaattctccctgcctcagcctcccgagtagctgagattacagacgcctgtcaccacacctggctaaatttttgtatatttagtagagatgaggttctgccatgttggccagactggtcttgaactcctgacctcaggtgatccactcacctcagcctcccaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463171 252 - 13858734 tattttgagatggagtcttgctctgttgcccaggctggagtgcagtggcacaatcttggctcactgcaacctctgcctccagggttcgagcaattctccctgcctcagcctcctgagtagctgagattacagatgcctgccaccacacctggctaaatttttgtatatttagtagagatgaggttctgccatgttggccagactggtcttgaactcctgacctcaggtgatccacccacctcaacctcccaa i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656560 252 - 185818997 tattttgagatggagtcttgctctgtcgcccaggctggagtgcaggggcacaatctcggctccctgcaacctctgcctccagggttcgagcaattctccctgcctcagcctccctagtagctgagattataggcacccgccaccacgcctggctaagtttttgtatatttagtagagacgaggttttgccatgttggccagactggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464330 252 - 192294377 tattttgagatggagtcttgctctgtcgcccaggctggagtgcaggggcacaatctcggctccctgcaacctctgcctccagggttcgagcaattctccctgcttcagcctccctagtagctgagattataggcacccgccaccacgcctggctaagtttttgtatatttagtagagacgaggttttgccatgttggccagactggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909192 252 + 9440265 tattttgagatggagtcttgctctgtcgcccaggctggagtgcaggggcacaatctcggctccctgcaacctctgcctccagggttcgagcaattctccctgcctcagcctccctagtagctgagattataggcatctgccaccacgcctggctaagtttttgtatatttagtagagacgaggttttgccatgttggccagactggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5648838 252 + 21915920 tattttgagatggagtcttgctctgtcgcccaggctggagtgcagtggcacaatctcggctccctgcaacctctgcctccagggttcgagcaattctccctgcctcagcctccctagtagctgagattacaggcacccgccaccacacctggctaagtttttgtatatttagtagagacgaggttttgccatgttggccagactggtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293277 252 - 90373283 tattttgagatggagtcttgctctgtcgcccaggctggagtgcaggggcacaatctcggctcactgcaacctctgcctccagggttcaagcaattctccctgcctcagcctcccaagtagctgagattacaggcacctgccaccacgcctggctaagtttttgtatgtttagtagagatgaggttttgccatgttggccagactggtcttgaactcctgccctcaggtgatctacctgcctcagcctcccaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621236 252 + 1337817 tattttgagatggagtcttgctctgtcacccaggctggagtgcagaggcacaatctcggctccctgcaacctctgcctccagggttcgagcaattctccctgcctcagcctcccaagtagctgagattacacgcacccgccaccacgcctggctaagtttttgtatatttagtagaggcaaggttttgccatgttggccagactagtcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 599832 196 - 3237654 tattttgagatggagtcttgctctgtcgcccaggctggagtgcaggggcacaatctcggctcactgcaaccgctgcctccagggttcgagcaattctccctgcttcagcctcccaa----------------------------------------------gtgtatttagtagagatgaggttttgccatgttggccagactggtcttgaactcctgacctcaggtg----------ttcagcctcctaa i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75809450 26 + 98207768 I e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19131748 1 + 50472720 I e otoGar3.GL873528 18316283 0 - 38779656 C e dasNov3.JH568778 627994 0 - 6883506 C e canFam3.chr31 11432606 130 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=43351.000000 s hg38.chr21_GL383578v2_alt 29166 9 + 63917 attgctggg s panTro5.chr21 866675 9 + 33445071 attgctggg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551325 9 + 46275980 attgctggg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463423 9 - 13858734 atttctggg i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656812 9 - 185818997 attgctggg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464582 9 - 192294377 attgctggg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909444 9 + 9440265 attgctggg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649090 9 + 21915920 attgctggg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293529 9 - 90373283 attgctgag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621488 9 + 1337817 attgctggg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600028 9 - 3237654 attgctggg i colAng1.NW_012116933v1 C 0 C 0 s dasNov3.JH568778 627994 6 - 6883506 attact--- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75809450 26 + 98207768 I e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19131748 1 + 50472720 I e otoGar3.GL873528 18316283 0 - 38779656 C e canFam3.chr31 11432606 130 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=127291.000000 s hg38.chr21_GL383578v2_alt 29175 30 + 63917 attacaggtgtgag--ctaccactcttgggca s panTro5.chr21 866684 30 + 33445071 attacaggtgtgag--ctaccactcttgggca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551334 30 + 46275980 attacaggtgtgag--ctaccactcttggGCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463432 30 - 13858734 attacaggtgtgag--ctaccactcttgggcg i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656821 30 - 185818997 attacaggtgtgag--ccaccactcctgggga i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464591 30 - 192294377 attacaggtgtgag--ccaccactcctgggga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909453 30 + 9440265 attacaggtgtgag--ccaccactcctgggga i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649099 30 + 21915920 attacagttgtgag--ccaccactcctggggg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293538 30 - 90373283 attacaggtgtgag--ccaccactcctgggtg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621497 30 + 1337817 attacaggtgtgag--ccaccactcctggggg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600037 30 - 3237654 attacaggtgtgag--ccaccactcctgagtg i colAng1.NW_012116933v1 C 0 C 0 s mm10.chr16 75809476 20 + 98207768 ATTACATGTGTGAAGTCTAC------------ i mm10.chr16 I 26 C 0 s dasNov3.JH568778 628000 7 - 6883506 --tacaggt----------------------- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19131748 1 + 50472720 I e otoGar3.GL873528 18316283 0 - 38779656 C e canFam3.chr31 11432606 130 + 39895921 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=6006.000000 s hg38.chr21_GL383578v2_alt 29205 1 + 63917 t s panTro5.chr21 866714 1 + 33445071 t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551364 1 + 46275980 T i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463462 1 - 13858734 t i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656851 1 - 185818997 t i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464621 1 - 192294377 t i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909483 1 + 9440265 t i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649129 1 + 21915920 t i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293568 1 - 90373283 t i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621527 1 + 1337817 t i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600067 1 - 3237654 t i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11432736 1 + 39895921 T i canFam3.chr31 I 130 C 0 e mm10.chr16 75809496 0 + 98207768 C e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19131748 1 + 50472720 I e otoGar3.GL873528 18316283 0 - 38779656 C e dasNov3.JH568778 628007 0 - 6883506 C e nomLeu3.chr25 1578313 7745 + 32716333 I a score=53472.000000 s hg38.chr21_GL383578v2_alt 29206 8 + 63917 ctttttta s panTro5.chr21 866715 8 + 33445071 ctttttta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551365 8 + 46275980 CTTTTTTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463463 8 - 13858734 ctttttta i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656852 8 - 185818997 ctttttta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464622 8 - 192294377 ctttttta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909484 8 + 9440265 ctttttta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649130 8 + 21915920 ctttttta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293569 8 - 90373283 ctttttta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621528 8 + 1337817 ctttttta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600068 8 - 3237654 ctttttta i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18316283 7 - 38779656 -CCTTTTA i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75809496 8 + 98207768 CTGTATTC i mm10.chr16 C 0 C 0 s canFam3.chr31 11432737 8 + 39895921 CTATTTTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628007 5 - 6883506 ---tttta i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e calJac3.chr21 19131748 1 + 50472720 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=329876.000000 s hg38.chr21_GL383578v2_alt 29214 59 + 63917 ttatGTTAGAAACATT-TTTTAAAAAT----ATTAGAAATATCTGACAC-ATTTTATGGA-------------------GAGGG s panTro5.chr21 866723 59 + 33445071 ttatattaGAAACATT-TTTTAAAAAT----ATTAGAAATATCTGACAC-ATTTTATGGA-------------------Gaggg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551373 59 + 46275980 TTATATTAGAAACATT-TTTAAAAAAT----ATTAGAAATATCTGACAC-ATTTTATGGA-------------------Gaggg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463471 59 - 13858734 ttatattaGAAACATT-TTTAAAAAAT----ATTAGAAATATCTGACAC-ATTTTATGGA-------------------Gaggg i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656860 61 - 185818997 ttatattaGAAGCATT-TTTAAAAAAAAT--ATTAGAAATATCTGACAC-ATTTTATGAA-------------------GAGGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464630 61 - 192294377 ttatattaGAAGCATT-TTTAAAAAAAAT--ATTAGAAATATCTGACAC-ATTTTATGAA-------------------GAGGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909492 61 + 9440265 ttatattaGAAGCATT-TTTAAAAAAAAT--ATTAGAAATATCTGACAC-ATTTTATGAA-------------------GAGGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649138 60 + 21915920 ttatattaGAAGCATT-TTTAAAAAAAA---ATTAGAAATATCTGACAC-ATTTTTTGAA-------------------Gaggg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293577 60 - 90373283 ttatattaGAAGCA----TTTAAAAAAATATATTAGAAATATCTGACAC-ATTTTTTGAA-------------------GAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621536 59 + 1337817 ttatattaGAAGCATT-TTTTAAAAAA----ATTAGAAATATCTGACAC-ATTTTATGAA-------------------GAGGC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600076 59 - 3237654 ttatattaGAAGCATT-TTTAAAAAAT----ATTAGAAATATCTGACAC-ATTTTATGAA-------------------Gaggg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131749 60 + 50472720 TTATATTAAAAGCATT-TTAAAAACAT----TTTAGAAATGTCTGATACAAATTTATAAA-------------------GAAGA i calJac3.chr21 I 1 C 0 s otoGar3.GL873528 18316291 75 - 38779656 ATATATTAGAAACATTATTTAAGAAAA----ATTGGAAATATCTGATAC-ATTTTACCAGTTTTTG---TTTTC-CTCTGAGGG i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75809504 42 + 98207768 ------------CTGT-GTTAAAATGA----TCTAGAAATATCTGGCAT-ATCTCTGAGA------------------------ i mm10.chr16 C 0 C 0 s canFam3.chr31 11432745 68 + 39895921 ATATATTAGAAGCATT-TTTTTAAA------ATGAGAAATATCTGCCAC-ATCTTATCAA-----G---TTTTCTCTTTGAGGG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628012 55 - 6883506 --------------tt-ttttaa--------attagaaatacctgccac-aatttatcaa-----gtacttttctctgtgAAGA i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e aotNan1.NW_018487195v1 6065750 62 + 9889416 I e cebCap1.NW_016107322v1 7017719 66 - 14377064 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=464114.000000 s hg38.chr21_GL383578v2_alt 29273 47 + 63917 AGTAGTAGTAATCCTACATCATCTGAGAAAGTACATTTGGTCTGATC s panTro5.chr21 866782 47 + 33445071 agtagtagtaatcctacatcatctgagaaagtacatttggtctgatc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551432 47 + 46275980 agtagtagtaatcctacatcatctgagaaagtacatttggtctgatc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463530 47 - 13858734 agtagtagtaatcctacatcatctgagaaagtacatttggtctgatc i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656921 47 - 185818997 AGTAGTAGTAATCCTACATCACCTGAGAAAGTACAActggcctgatc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464691 47 - 192294377 AGTAGTAGTAATCCTACATCACCTGAGAAAGTACAACTGGCCTGATC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909553 47 + 9440265 AGTAGTAGTAATCCTACATCACCTGAGAAAGTACAActggcctgatc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649198 47 + 21915920 agtagtagtaatcctacatcacctgagaaaatacaactggcctgatc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293637 47 - 90373283 AGTAGTAGTAATCCTACATCACCTGAGAAAATACAACTGGCCTGATC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621595 47 + 1337817 AGTAGTAGTAATCCTACATCACCTGAGAAAGTACAActggcctgatc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600135 47 - 3237654 agtagtggtaatcctacatcacctgagaaagtacaactggcctgatc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131809 47 + 50472720 AGTAGCAGTTATCCTACATCATCTGATAAAATACATCTGGCCTGATC i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7017785 47 - 14377064 AGTAGTAGTAATCCTACATCATCTGATCAaatacatctggcctgatc i cebCap1.NW_016107322v1 I 66 C 0 s aotNan1.NW_018487195v1 6065812 47 + 9889416 agtagtagtaatcctacatcatctgataaaatacatctggcctgatc i aotNan1.NW_018487195v1 I 62 C 0 s otoGar3.GL873528 18316366 47 - 38779656 ACTAGTGATAATCTTACATTAGTTGAGGAAATATGTCTCACTTGGTC i otoGar3.GL873528 C 0 I 1907 s mm10.chr16 75809546 46 + 98207768 ACTAGAAATAATCTTTCATCTCCCGAGAAAACACCCTTGGACTAAC- i mm10.chr16 C 0 C 0 s canFam3.chr31 11432813 47 + 39895921 ACTAGGAATAATCATATGTCATCTGAAGACATTCATCTGCCCAGATC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628067 44 - 6883506 ACTAGAAATAATCCTAAA---CCTGAGGAAATATATCTGACCTGGTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=333336.000000 s hg38.chr21_GL383578v2_alt 29320 31 + 63917 TGGATTCTTTCTCTGTGTGTCTTCTATT-TCT s panTro5.chr21 866829 31 + 33445071 tggattctttctctgtgtgtcttctatt-tct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551479 31 + 46275980 tggattatttctctgtgtgtcttctatt-tct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463577 31 - 13858734 tggattctttctctgtgtgtcttctatt-tct i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656968 31 - 185818997 tggattctttctctgtgtgtcttatatt-tct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464738 31 - 192294377 TGGATTCTTTCTCTGTGTGTCTTATATT-TCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909600 31 + 9440265 tggattctttctctgtgtgtcttatatt-tct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649245 31 + 21915920 tggattctttctctgtgtgtcttatatt-tct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293684 31 - 90373283 TGGATTCTTTCTCTGTGTGTTTTATATT-TCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621642 31 + 1337817 tggattctttctctgtgtgtcttatatt-tct i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600182 31 - 3237654 tggattctttctctgtgtgtcttatatt-tct i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131856 31 + 50472720 TGGATTTTTTCTCTGTGTGTCTTATATT-TCT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7017832 31 - 14377064 tggattctttctctgtgtgtcttatatt-tct i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6065859 31 + 9889416 tggattctttctctgtgtgtcttatatt-tct i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18318320 31 - 38779656 tggGTTCTTTTTCTACATTCCTTATATT-ATT i otoGar3.GL873528 I 1907 C 0 s mm10.chr16 75809592 27 + 98207768 ----GTCTCTTGCTGTGAGTCATGTAGT-TTA i mm10.chr16 C 0 C 0 s canFam3.chr31 11432860 32 + 39895921 GGGATTCTTTTTCTGTGTAAGTTGTATTATCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628111 31 - 6883506 TGGATTTTTTTTCTATGTGCCTTGTATT-TTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e saiBol1.JH378168 2480493 132 + 13128814 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=304133.000000 s hg38.chr21_GL383578v2_alt 29351 34 + 63917 CTTGTCCCAT----GTGGTCATCAATGG--GATGTATGCt s panTro5.chr21 866860 34 + 33445071 cttgtcccat----gtggtcatcaatgg--gatgtatgct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551510 34 + 46275980 cttgtcccat----gtggtcatcaatgg--gatgtatgct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463608 34 - 13858734 cttttcccat----gtggtcaccaatgg--ggtgtatgct i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152656999 36 - 185818997 cttgtcccat----gtggtcatcaatgggagatgtatgct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464769 36 - 192294377 CTTGTCCCAT----GTGGTCATCAATGGGAGATGTATGCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909631 36 + 9440265 cttgtcccat----gtggtcatcaatgggagatgtatgct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649276 36 + 21915920 cttgtcccat----gtggtcatcaatgggagatgtatgct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293715 36 - 90373283 TTTGTCCCAT----GTGGTCATCAATGGGAGATGTATGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621673 36 + 1337817 cttgtcccat----gtggtcatcaatgggagatgtatgct i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600213 36 - 3237654 cttgtcccat----gtggtcatcaatgggagatgtatgct i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131887 34 + 50472720 CTTGTCCCAT----GTGGTCTTCAATGG--GATGTCTGCT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480625 34 + 13128814 CTTGTCCCAT----GTGGTCTGCTATTT--ACGtttttat i saiBol1.JH378168 I 132 C 0 s cebCap1.NW_016107322v1 7017863 34 - 14377064 cttgtcccat----gtggtcttcagtgg--gatgtctgct i cebCap1.NW_016107322v1 C 0 I 280 s aotNan1.NW_018487195v1 6065890 34 + 9889416 cttgtctcat----gtggtcttcaatgg--gatgtctgct i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18318351 34 - 38779656 CTTGTTTCAC----ATAATTTTTGATGG--CATGTCTGCT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809619 35 + 98207768 TTTGCCCCAGCACAGTGTCCACCACTCATCGTTAT----- i mm10.chr16 C 0 C 0 s canFam3.chr31 11432892 34 + 39895921 CTCGTCCTGT----GTGATCTACAGTGC--AATGTCTGTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628142 34 - 6883506 CTTGTCTCCT----GGTGTCTTCAGTGG--TATGGCTGCT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=10682.000000 s hg38.chr21_GL383578v2_alt 29385 2 + 63917 at s panTro5.chr21 866894 2 + 33445071 at i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551544 2 + 46275980 at i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463642 2 - 13858734 at i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657035 2 - 185818997 ac i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464805 2 - 192294377 AC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909667 2 + 9440265 ac i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649312 2 + 21915920 ac i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293751 2 - 90373283 AC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621709 2 + 1337817 ac i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600249 2 - 3237654 ac i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131921 2 + 50472720 AC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480659 2 + 13128814 ta i saiBol1.JH378168 C 0 C 0 s aotNan1.NW_018487195v1 6065924 2 + 9889416 ac i aotNan1.NW_018487195v1 C 0 I 14 s otoGar3.GL873528 18318385 2 - 38779656 AT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809654 1 + 98207768 -T i mm10.chr16 C 0 C 0 s canFam3.chr31 11432926 2 + 39895921 AC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628176 2 - 6883506 AT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e cebCap1.NW_016107322v1 7017897 280 - 14377064 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=1601509.000000 s hg38.chr21_GL383578v2_alt 29387 150 + 63917 ttacttttttattt------tttattttatgtttatGTCTTTAACCAGAGCGCATAAAGTGTG--GAATCTTTCTCAACTGG---------TTTCCTTTGGA-AGACTTGATTTTGTTCAAAATTTCACCAAATCCTGTCTGTGGACATGTAG------TGCTTTCACGCCCTT s panTro5.chr21 866896 150 + 33445071 ttacttttttattt------tttattttatgtttatgtctttaaccagagcgcataaagtgtg--gaatctttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtggacatgtag------tgctttcacgccctt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551546 150 + 46275980 ttacttttttattt------tttattttatgtttatgtctttaaccagagcgcataaagtgtg--gaatctttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtggacatgtag------tgctttcacgccctt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463644 149 - 13858734 ttacttttttattt------tttattttatgtttatgtctttaaccagagcgcataaagtgtg--gaat-tttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtggacatgtgg------tgctttcacgccctt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657037 150 - 185818997 ttacttttttatta------tttattttatgcttgtgtctttaatcagagtgcataacatatg--gaatctttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtggacatgctg------tgctgtcacgccctt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464807 150 - 192294377 TTACTTTTTTATTA------TTTATTTTATGCTTGTGTCTTTAATCAGAGTGCATAACGTATG--GAATCTTTCTCAACTGG---------TTTCCTTTGGA-AGACTTGATTTTGTTCAAAATTTCACCAAATCCTGTCTGTGGACATGCGG------TGCTGTCACGCCCTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909669 150 + 9440265 ttacttttttatta------tttattttatgcttgtgtctttaatcagagtgcataacgtatg--gaatctttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtggacatgcgg------tgctgtcacgccctt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649314 150 + 21915920 ttacttttttatta------tttattttatgcttgtgtctttaatcagagtgcataacgtatg--gaatctttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtggacatgcgg------tgctgtcacgccctt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12293753 150 - 90373283 TTACTTTTTTATTA------TTTATTTTATGCTTATGTCTTTAACCAGAGTGCATAATGTATG--GAATCTTTCTCAACTGG---------TTTCCTTTGGA-AGACTTGATTTTGTTCAAAATTTCACCAAATCCTGTGTGTGGACGTGCGG------TGCTGTCACGCCCTT i chlSab2.chr2 C 0 I 277 s manLeu1.NW_012107264v1 621711 150 + 1337817 ttacttttttatta------cttattttatgcttgtgtctttaatcagagtacataacgtatg--gaatctttctcaactgg---------tttcctttgga-agacttgattttgttcaaaatttcaccaaatcctgtctgtgaacatgcgg------tgctgtcacgccctt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600251 150 - 3237654 ttacttttttatta------tttattttatgcttatgtctttaatcagagtgcataacgtatg--gaatctttctcaaccgg---------tttcctttgga-agacttgattttgttcaaaatttcactaagtcctgtctgtggacatgcgg------tgctgtcatgccgtt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19131923 150 + 50472720 TTACATTTTTATTA------TTTATTTTATGCTTATGTTTTTAACCATAGTGTATAAAGTATG--GAATCTTTCTCAAGTGG---------TTTCCTTGGGA-AGACTTTATTTTGTTAAAAATTTCACCAAATCCCCTCTCTGAACATGTGG------TACTGGCATGCCCAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480661 150 + 13128814 ttacttttttatta------tttattttatGCTTATATTTTTAACCAAAGTGCATAAAGTATA--GAATCTTTCTCAAGTGG---------TTTTCTTTAGA-AGACTTGATTTTGTTCAAGATTTCACCAAATCCTCTCTCTGGACATGTGG------TACTGGCATGCCCTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018177 150 - 14377064 TTACTTTTTTATTA------Tttattttatgcttatgcttttaaccatagcgcataaagtatg--taatctttctcaagtgg---------tttcctctgga-aggcttgattttcttcaaaatttcgccaaatcctctctctggacatgtgg------tgctgacatgccctt i cebCap1.NW_016107322v1 I 280 C 0 s aotNan1.NW_018487195v1 6065940 150 + 9889416 ttacttttttgtta------cttattttatgcttatgtttttaaccatagtgcataaagtatg--gaatctttctcaagtag---------tttccttagga-agacctgattttgttcagaatttcaccaaatcctctctctggatgtgtgg------tgctggcatgccctt i aotNan1.NW_018487195v1 I 14 C 0 s otoGar3.GL873528 18318387 152 - 38779656 TTACTTTTTTATTATTATCTTTTGTTTTATGCTTATGTCTTT-ACCAGAGTGAATAAAATATG--GACTCTTTCTCAACTGA---------TTTCCTTTAGA-AAATTTAACTTTCTTCA-AATCTCACCAAATGCCTTCTTTGGCCATGTGG------GGCTATAACTCTT-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809655 149 + 98207768 TTGCTGTTT--CTT------TTTATTTTATGTTTACATCTTTCACCAGAGT-CCTCCCGTATACTGAAACTTTCTTAAATGA---------TTTCCTTGTGA-TGTCTTGATTTTCCTCAAAATCTCACCAAATGCCTTCTGTGTCCATGTGA------TGCTGTGGCGCTCAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11432928 161 + 39895921 TTACTTTTTTATCATTACCTTTTATTTTATGAATATGTATTTAAT--GAGTACATAATGTACG--GAAACTTTCTCAACCAATTTTTTTTTTTTTTTTTAGA-AGACCCAGTTTTGTCCAGTATCTCACCAAATATTCTCTGTGGCCATATGA------TGCTGTGACTCTT-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628178 139 - 6883506 -CATTTTTTTATAA------TTCCCTTTTTGTTTATGCAT----------------ATGCATT--TAATATTTATCAACAGT---------TTTCCTTTAAATAGACTTGATTTTGTCTAAAAACATACCAAATGTTTTTTGTGG-CATGCAATACCGTTGCTGTGTCTCACTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=113234.000000 s hg38.chr21_GL383578v2_alt 29537 18 + 63917 CTTTCATGTACCTTTTTC s panTro5.chr21 867046 18 + 33445071 ttttcatgtacctttttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551696 18 + 46275980 ttttcatgtacctttttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463793 18 - 13858734 ttttcatgtaccagtctt i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657187 18 - 185818997 tattcttgtaccaatctt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464957 18 - 192294377 TATTCTTGTACCAATCTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909819 18 + 9440265 tattcttgtaccaatctt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649464 18 + 21915920 tattcttgtacctatctt i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 621861 18 + 1337817 tattcttgtaccaatctt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600401 18 - 3237654 ttttcttgtgccaatctt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19132073 18 + 50472720 CTTTCATGTGCCATTATT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480811 18 + 13128814 CTTTCAGGTGCCATTATT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018327 18 - 14377064 ctttcatgtgccattatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6066090 18 + 9889416 ctttcatgtgccattatt i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18318539 18 - 38779656 CTTTCATGTATTAGTCTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809804 16 + 98207768 --CTCAGGTTCCAATCTT i mm10.chr16 C 0 C 0 s canFam3.chr31 11433089 18 + 39895921 CTCAAAAGTCTCAGTCTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628317 18 - 6883506 CTCTTGTGTCTGAGTCTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e chlSab2.chr2 12293903 277 - 90373283 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=75205.000000 s hg38.chr21_GL383578v2_alt 29555 7 + 63917 CCACCCA s panTro5.chr21 867064 7 + 33445071 ccaccca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551714 7 + 46275980 ccaccca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463811 7 - 13858734 ccaccca i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657205 7 - 185818997 ccacccg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464975 7 - 192294377 CCACCCG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909837 7 + 9440265 ccacccg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649482 7 + 21915920 ccacccg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12294180 7 - 90373283 CCACCCG i chlSab2.chr2 I 277 C 0 s manLeu1.NW_012107264v1 621879 7 + 1337817 ccacccg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600419 7 - 3237654 ccaccca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19132091 7 + 50472720 TCACCTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480829 7 + 13128814 TCACCTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018345 7 - 14377064 tcacctg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6066108 7 + 9889416 tcacctg i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18318557 7 - 38779656 CCATATG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809820 7 + 98207768 CCATCTG i mm10.chr16 C 0 C 0 s canFam3.chr31 11433107 7 + 39895921 CCATTTG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628335 7 - 6883506 CCATCTG i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16831770 3699 + 47401472 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=420701.000000 s hg38.chr21_GL383578v2_alt 29562 53 + 63917 GATTTATGT--TCTCTTTGGCAACGC------TG--TTCTCTGTGGTGG-CAGCAAACTCAGTG s panTro5.chr21 867071 53 + 33445071 gatttatgt--tctctttggcaacgc------tg--ttctctgtggtgg-cagcaaactcagtg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551721 53 + 46275980 gatttatgt--tctctttggcaacgc------tc--ttctctgtggtgg-cagcaaactcagtg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463818 53 - 13858734 gatttacgt--tctctttggcaacgc------tg--ttctctgtggtgg-cagcaacctcagtg i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657212 35 - 185818997 gttttatg----------------------------ttttctgtggtgg-cagcaacctcagtg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159464982 35 - 192294377 GTTTTATG----------------------------TTTTCTGTGGTGG-CAGCAACCTCAGTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909844 35 + 9440265 gttttatg----------------------------ttttctgtggtgg-cagcaacctcagtg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649489 35 + 21915920 gttttatg----------------------------ttctctgtggtgg-cagcaacctcagtg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12294187 53 - 90373283 GTTTTATGT--TCTCTTTGGCAATGC------TA--TTCTCTGTGGTGG-CAGCAACCTCAGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621886 35 + 1337817 gttttatg----------------------------ttctctgtggtgg-cagcaacctcagtg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600426 53 - 3237654 gttttatgt--tctctttggcaatgc------ta--ttctctgtggtgg-cagcaacctcagtg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19132098 54 + 50472720 GATTTATGT--TCTCTTTGGCAACGC------TG--TTTTCTGTGGTAGCCATCCCTCTCAGTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480836 54 + 13128814 GATTTATGT--TCTCTTTGGCAATGC------TG--TTTTCTGTGTTAGCCATCCCTCTCAGTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018352 54 - 14377064 gatttatgt--tctctttggcaatgc------ta--ttttctgtggtagccatccgtctcagtg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6066115 54 + 9889416 gatttatgt--tctctttggcaatgc------tg--ttttctgtggtagccatccctctcagag i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16835469 53 + 47401472 gatctatgt--tcgctttggcaactc------tg--ttctctgtggtag-cagaaacatcagtg i micMur3.chr31 I 3699 I 14 s otoGar3.GL873528 18318564 53 - 38779656 GATCTATGT--TCTCTTTGGCAACTC------TA--TTCTCTGTGGTAG-CAGCAACATCAGTG i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75809827 51 + 98207768 TATCTGTGC--TCTACTTGGCAACTC----------TTTTCTGTGGTAG-CAGCGGCCTCCTCA i mm10.chr16 C 0 I 4 s canFam3.chr31 11433114 61 + 39895921 GATCTATGTTCTCTCTTTGGCAACTAACTCTGTT--TTCTCTGTGGTAG-CAGCAACCTCAGTG i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 628342 53 - 6883506 GATCTATGT--TCTCTTTGACAACAC------TGTTCTCTCTGTGGTAG-CAGCAACCTCAG-- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=108667.000000 s hg38.chr21_GL383578v2_alt 29615 12 + 63917 CAGTGAGGGAGG--------- s panTro5.chr21 867124 12 + 33445071 cagtgagggagg--------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551774 12 + 46275980 cagtgagggagg--------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463871 12 - 13858734 cagtgagggagg--------- i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657247 12 - 185818997 cagcgagggagg--------- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159465017 12 - 192294377 CAGCGAGGGAGG--------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909879 12 + 9440265 cagcgagggagg--------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649524 12 + 21915920 cagcgagggagg--------- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12294240 12 - 90373283 CAgcgagggagg--------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621921 12 + 1337817 cagcgagggagg--------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600479 12 - 3237654 cagcgagggagg--------- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19132152 12 + 50472720 CTGTGAAGAAGG--------- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480890 12 + 13128814 CAGTggagaagg--------- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018406 12 - 14377064 cagtgaagaagg--------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6066169 12 + 9889416 cagtaaagaagg--------- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18318618 11 - 38779656 CAACAGGGGGG---------- i otoGar3.GL873528 I 1 I 2 s mm10.chr16 75809882 12 + 98207768 CAGGGAGAGAAG--------- i mm10.chr16 I 4 C 0 s canFam3.chr31 11433176 12 + 39895921 CAACAGGAGTGG--------- i canFam3.chr31 I 1 C 0 s dasNov3.JH568778 628395 21 - 6883506 CAGCAAGGGTAGAGTAGTGGT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e micMur3.chr31 16835522 14 + 47401472 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=546043.000000 s hg38.chr21_GL383578v2_alt 29627 42 + 63917 GGgaaatttt-atatcttctttgttagtaataaatactttctg s panTro5.chr21 867136 42 + 33445071 gggaaatttt-atatcttctttgttagtaataaatactttctg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551786 42 + 46275980 gggaaatttt-atatcttctttgttagtaataaagactttctg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463883 42 - 13858734 gggaaatttt-atatcttctttgttagtaataaatactttctg i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657259 42 - 185818997 gggaaatttt-ataccttctttgtcagtaataaacactttctg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159465029 42 - 192294377 GGgaaatttt-atatcttctttgtcagtaataaacactttctg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909891 42 + 9440265 gggaaatttt-atatcttctttgtcagtaataaacactttctg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649536 42 + 21915920 gggaaatttt-atatcttctttgtcagtaataaacactttttg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12294252 42 - 90373283 gggaaatttt-atatcttctttgtcagtaataaacactttctg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621933 42 + 1337817 gggaaatttt-atatcttctttgtcagtaataaacactttctg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600491 42 - 3237654 gggaaatttt-atatcttctttgtcagtaataaacactttctg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19132164 42 + 50472720 AGGAAATTTT-GTATCTTCTTTGTCAGTAATAAAAATTTTCTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480902 42 + 13128814 aggaaatttt-atatcttatttgtcagtaataaacactttctg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018418 42 - 14377064 aggaaattct-atgtcttctttgtcagtagtaaacactttctg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6066181 43 + 9889416 aggaaattttgatatcttctttgtcagtaataaacactttctg i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16835536 42 + 47401472 gggacatttt-acatcttctttctcaggaaaaaattcttcttt i micMur3.chr31 I 14 C 0 s otoGar3.GL873528 18318631 42 - 38779656 TGGATAtttt-acatcttctttggcaggaaaaaacacatcttt i otoGar3.GL873528 I 2 C 0 s mm10.chr16 75809894 41 + 98207768 -GGGAACGTT-ACATCTTCTTTGGCAGGAATGAACACTTCCTG i mm10.chr16 C 0 C 0 s canFam3.chr31 11433188 42 + 39895921 GGgaaatttt-acattctctttggcaggagtaaacacttcctg i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628416 41 - 6883506 GGTAGATTTT-ACGTCTTC-TTGAGAATAATAGACGcttcctt i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1166783 30390 - 2312742 I e nomLeu3.chr25 1578313 7745 + 32716333 I a score=9861969.000000 s hg38.chr21_GL383578v2_alt 29669 672 + 63917 cctgtagtccaaaataagaataaattacccactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaaacagtcccctggcagtcatggtttggggtgttactgtttacaataccgtgg-gggttacGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTACTTCTGACATTTATGT-AA-----AAAAAGAAAGAATGGAGGAGACTTTGGGT----TATCAAGCAAGTTGGCAATG--------TGGATGATTATAGTTATGGCTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGAGTATT----TTCCGTTCTAACAATATGTG------------GTACCAGTAAGAACTTTAATGCACGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTACCTTCCTTTGGCCTTTTACCATGCTAGTTGTTTTA-TTTTTCTCATAACTAAGATTGCCTCAttctcacaaacc---tcctttatttggtaaacttttaaatttggttgccactctctggat--ttctttccatttcttgatgtact s panTro5.chr21 867178 672 + 33445071 cctgtagtccaaaataagaataaattacccactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaaacagtcccctggcagtcatggtttggggcgttactgtttacaataccgtgg-gggttacGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTACTTCTGACATTTATGT-AA-----AAAAAGAAAGAATGGAGGAGACTTTGGGT----TATCAAGCAAGTTGGCAATG--------TGGATGATTATAGTTATGGCTCTCAAGTTAATTCTTAAAAATTAGACTTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGAGTATT----TTCCGTTCTAACAATATGTG------------GTACCAGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTCAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTAGTTGTTTTA-TTTTTCTCATAACTAAGATTGCCTCAttctcacaaacc---tcctttatttggtaaacttttaaatttggttgccactctctggat--ttctttccatttcttgaagtact i panTro5.chr21 C 0 C 0 s panPan2.chr21 14551828 672 + 46275980 cctgtagtccaaaataagaataaattacccactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaaacagtcccctggcagtcatggtttggggcgttactgtttacaataccgtgg-gggttacGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTACTTCTGACATTTATGT-AA-----AAAAAGAAAGAATGGAGGAGACTTTGGGT----TATCAAGCAAGTTGGCAATG--------TGGATGATTATAGTTATGGCTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGAGTATT----TTCCGTTCTAACAATATGTG------------GTACCGGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTCAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTAGTTGTTTTA-TTTTTCTCATAACTAAGATTGCCTCAttctcacaaacc---tcctttatttggtaaacttttaaatttggttgccactctctggat--ttctttccatttcttgatgtact i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 463925 671 - 13858734 cctgtaggccaaaatgagaataaattactcactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattacacagtcccctggcagtcatggtttggggtgttactgtttacaataccgtgg-gggttacGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTACTTCTGACATTTGTGT-AA-----AAAAAGAAAGAATGGAGGAGACTTTGGGT----TATCAAGCAAGTTGGCAATG--------TGGATGATTATAGTTATGGCTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGTGTATT----TTCCATTCTAACGATATGTG------------GTACCAGTAAGAAC-TTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTAGTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCAttctcacaaacc---tcctttatttggtaaacttttaaatttggttgccactctctggat--ttctttccatttcttgatgaact i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152657301 683 - 185818997 cctgtagtccaaaatgaaaataaattactcactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaactggtcccccggcagtcatggtttggggtgttactgtttaCAATACCACAG-GGGTTACGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AGAAAGAAAGAATGAAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTG--------TGGATGACTATAGTTATGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATATCTCTGAGTATT----TTCCTTTCTAACAATACGTGTACTTCT-AACAATACCAGTAGGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCACAACCC---TCCTTCATTTGGTAAACTTTTAAATGTGgttgccactctctggat--ttctttccatttcttgatgtatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159465071 683 - 192294377 cctgtagtccaaaatgaaaataaattactcactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaactggtcccccggcagtcatggtttggggtgttactgtttaCAATACCACAG-GGGTTACGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AGAAAGAAAGAATGAAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTG--------TGGATGACTATAGTTATGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATATCTCTGAGTATT----TTCCTTTCTAACAATACGTGTACTTCT-AACAATACCAGTAGGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCACAACCC---TCCTTCATTTGGTAAACTTTTAAATGTGGTTGCCACTCTCTGGAT--TTCTTTCCATTTCTTGATGTATT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5909933 683 + 9440265 cctgtagtccaaaatgaaaataaattactcactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaactggtcccccagcagtcatggtttggggtgttactgtttaCAATACCACAG-GGGTTGCGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCACAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AGAAAGAAAGAATGAAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTG--------TGGATGACTATAGTTATGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATATCTCTGAGTATT----TTCCTTTCTAACAATACGTGTACTTCT-AACAATACCAGTAGGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCACAACCC---TCCTTCATTTGGTAAACTTTTAAATGTGgttgccactctctggat--ttctttccatttcttgatgtatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5649578 691 + 21915920 cctgtagtccaaaatgaaaataaattactcactgtgcagaaacatagaagtc-----atgatattctcaataaagcaccattaactggtcccccggcagtcatggtttggggtgttactgtttaCAATACCACAG-GGGTTACGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AGAAAGAAAGAATGGAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTGTGGATGACTGGATGACTATAGTTACGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGAGTATT----TTCCTTTCTAACAATACGTGTACTTCT-AATAATACCAGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTCCCTTCCCTTGGCCTTTTACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCACAACCC---TCCTTCATTTGGTAAACTTTTAAATGTGgttgccactctctggat--ttctttccatttcttgatgtatt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12294294 682 - 90373283 cctgtagtccaaaatgaaaataaattactcactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccatgaactggtcccccggcagtcatggtttggggtgttactgtttaCAATACCACA--GGGTTACGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AGAAAGAAAGAATGGAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTG--------TGGATGACTATAGTTATGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTTTGAATATT----TTCCTTTCTAACAATACGTGTACTTCT-AACAATACCAGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAGATTTACTATTTACCTTCCCTTGGCCTTTCACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCACAACCC---TCCTTCATTTGGTAAACTTTTAAATGTGGTTGCCACTCTCTGGAT--TTCTTTCCATTTCTTGATGTATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 621975 683 + 1337817 cctgtagtccaaaatgaaaataaattactcactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaactggtcccccggcagtcatggtttggggtgttactgtttaCAATACCACAG-GGGTTACGTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AGAAAGAAAGAATGGAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTG--------TGGATGACTATAGTTATGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGAGTATT----TTCCTTTCTAACAATGCGTGTACTTCT-AACAATACCAGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTTACTATTTACCTTCCCTTGGCCTTTTACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTTATTCTCACAACCC---TCCTTCATTTGGTAAACTTTTAAATGTGgttgccactctctggat--ttctttccatttcttgatgtatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 600533 684 - 3237654 cctgtaatccaaaatgaaaataaattacccactgtgcagaaacatggaagtc-----atgatattctcaataaagcaccattaactggtcccccggcagtcatggtttggggtgttactgtttacaataccatcg-gggttacaTTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTATTTATTCCATAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACTTTTATGT-AA-----AGAAAGAAAGAATGGAGGAGACTTTGGCT----TATCAAGCAAGTTGGCATTG--------TGGATGACTATAGTGATGGTTCTCAAGTTAATTCTTAAAAATTAGACCTTT---CCACAATCAAATAAAACTGGATAATTGACATGTCTCTGAGTATT----TTCCTTTCTAACAATATGTGTACTTCTAAACAATACCAGTAAGAACTTTAATGCCTGAT---------ATTTTATCCTTTGCTTGCTATGTAAGATGTCTCTAAATTGACTATTTACCTTCCTTTGGCCTTTTACCATGCTACTTGTTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCACCACCC---TCCTTCATTTGGTAAACTTTTAAATGTGGTTGCCACTCTCTGAAT--TTCTTTCCATTTCTTGATGTATT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19132206 654 + 50472720 CCTGTAATCCAAAATGAAAATAAATT-TCCACTGTGCAGAAACATGGAAGTC-----ATGATATTCTCAATAAAACACCATCAAATGGTCCCCCAGCAGTGATGGTTT-GGGTATTACTGTTTACATTATGATAG-GGGTTAAATTTCCATT-TATTTTGAATAATTTAACAATAAAATACAAATTGTTTATTCTGTAATG-CTAACTTTGTTTTGCAC----TGTTTAAATTTTAGCGTTTTACTAGTGTTGAGGGATGGCATCCAGAATATTTGCATTTTTGTTTCTGACATTTACGT-AA-----AAAAAGAAGGAATGGAGGAGACTTTGGCT----TATCAAGCAAGCTGGCATTG--------TGGATGATTATAGCTATAATCCTCAAGTTAATTCTTAAAAATTAGACGTTT---CCACAATCAAATAAAACTGGATAATTGACATGCCACTGAGTATG----TTCCCTTCTAACA-------------------GTACCAGTAACAA-TTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATCTAAAAGGGCTCTAAATTAACTATTTACTTTCC-TTGA-CTTTTACTATGCTA----TTTTG-TTTTTCTCATAACAAAGATTGCCTCATTCTGATAACCC---TTCTTTATTTGGTAAATTTTTAACTTTGGTTGCCATTCTCTGGAT--TTCTTTCAGTTTCTTGATGTATT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2480944 659 + 13128814 cctgtaatccaaaatgaaaataaattacccactgtacagaaacatggaagtc-----atgatattctcaataaaagaccattaaatggtcccccgacagtgatggttt-gggtgttactgtttaCAATACGATAG-AGGTTAAATTTCCATTAGATTTTGAATAATTTAGCAATAAAATACGAATTGTTTATTGTGTAATGTCTAATTTTGTTTTGCAC----TGTTTACATTTTAGCATTTTACGAGTGTTGAGGGATGGCATCCAGGGTATTTGCATCTTTATTTCTGACATTTATGT-AG-----AAAAAGAAGGAATGGAGGAAACTTTGGCT----TATCAAGCAAGCTGGCATTG--------TGGATGATTATAGCTATAATCCTCAAGTTAATTCTAAAAGATTAGACGTTT---CCACAATCAAATAAAACTGGATAATTGACATGCCACTGAGTATG----TTCCCTTCTAACA-------------------GTACCAGTAAGAACTTTAATGCCTGGT---------ATTTTATCCTTTGCTTGCTATTTAAAATGGCTCTAAATTAACTATTTTCTCTCC-TTGACCTTTTACTATGCTA----TTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCATAACCC---TCCTGTATTTGATAAATTTTTAAAtttggttgccattctctggat--ttctttcagtttcttgatgtatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7018460 660 - 14377064 cctgtaatccaaaatgaaaataaattacccactgtgcagaaacatggaagtc-----atgatattctcaataaaacaccattaaatggtcccccagcagtgatgtttg-gtgtgttactgtttaCAATACGATAG-AGGTTAAATTTCCATTAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCTGTAATGTCTAACTTTGTTTTGCAC----TGTTTACATTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGAATATTTGCATCTTTATTTCTGACATTTATGTAAA-----AAAAAGAAGGAATGGAGGAGACTTTGGCT----TATCAAGCAAGCTGGCATTG--------TGGATGATTATAGCTATAATCCTCAAGTTAATTCTTAAAAATTAGACATTT---CCACAATCAAATAAAACTGGATAATTGACATGCCACTGAGTATG----TTCCCTTCTAACA-------------------GAACCAGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTCGCTTGCTATTTAAAATGGCTCTAAATTAACTATTTACTTTCC-TTGACCTCTTACTATGCTA----TTTTG-TTTTTCTCATAACTAAGATTGCCTCATTCTCATTACCT---TCCTTTATTTGGTAAATTTTTTAATTTGGTTGCCATTCTCTGGAT--TTCTTTCAGTTTCTTGATGTATT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6066224 659 + 9889416 cctgtaacccaaaatgaaaataaattacccaccgtgcagaaacatggaagtc-----atgatattctcaatataacaccattaaatggtcccccagcggtgatggttt-gggtgttactgtttaCAATACAACAA-GGGTTAAATTTCCGTTAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCTGTAATGTCTAACTTTGTTTTGCAC----TGTTTACATTTTAGCATTTTACTAGTGTTGAGGGATGGCATCCAGGATATTTGCATCTTTATTTCTGACATTTATGT-AA-----AAAAAGAAGGAATGGAAGAGATTTTGGCT----TATCAAGCAAGCTGGCATTG--------TGGATGATTATAGCTATAATCCTCAAGTTAATTCTTAAAAATTAGACGTTT---CCACAATCAAATAAAACTGGATAATTGACATGCCACTGAGTATG----TTCCCTTCTAACA-------------------GTACCAGTAAGAACTTTAATGCATGAT---------ATTTTATCCTTTGCTTGCTATTTAAAATGGCTCTAAATTAACTATTTACTTTCC-TTGACCTTTTACCATGCTA----TTTTG-TTTTTCTCATAACTAAGATTacctcattctcataaccc---tcctttatttggtaatttttttaatttggttgccattctctggat--ttctttcagtttcttgatgtatt i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16835578 671 + 47401472 cctggagtccaaaatgaaaataaattacccactgtgctgaaacatggaaggc-----atgatgttttcaatgaaacgccattaaacagtcttctgatagtcatggttttgggtgtcaccatttacaataccataa-gggttacaTTTCCATGAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTTTTCTGTAATGTCTAACTTTATTTTGCAC----TGTTTATACTTTAGCATTTTATTAGTGTTGAGGGATGGCATCCAGAATATTTGCATATTTATTTCTGCCATTTTCAG-AA-----AAAAAGAAAGAATGGAGGTGACTTGGGCA----TATCAAGGAAATTGGCATTG--------TGGATGATTACAGTTATGATCCTCAAGTTAATTCTT-AAAATGGGACCTTT---TCACACTAAAATAAAACTGGATAATTGACATGTTTCTGTGTATT----TTTCTTTTTAACAATAGGTC------------CTACCAATAAGGACTTTAATGCATGAC---------ATTTTATCCTTTGCTTGCTATGTGAAATAGTTCTAAATTTGCTATCTATCTTCCCTTGACCTTTTACCATGCTAGTTGTTTTG-TTTCCCTCATAACTAAGATTGCCCCATTCTCACACCCT---TTCTTTatttactaaactttttaatttgtttgccattctctgaat--ttctcccagcttctctatgtatt i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1197173 672 - 2312742 cctggagtccaaaatgaaaataaattacccactgtgtagaaacgtggaaggc-----atgatattttcaatgaaacaccattaaatagtctcctgatagtcatggttttgggtgttaccacttacaataccgtaa-gggttacaTTTCCATGAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTTTTCTGTAATGTCTAACTTTATTTTGCAC----TGTTTACACTTTAGCATTTTATTAGTGTTGAGGGATGGCATCCAGGATATTTGCATATTTATTTCTGCCATTTTCAG-AA-----AAAAAGAAAGAATGGAAGTGACTTGGGCA----TATCAAGGAAATTGGCATTG--------TGGATGATTACAGTTATGATCCTCAAGTTAATTCTTAAAAATGGGACCTTT---TCACAGTAAAATAAAACTGGATAATTGACATGTTTCTGTGTATT----TTCCTTTCTAACAATAGGTC------------CTACCACTAAGGACTTTAATGCATGAC---------ATTTTATCCTCTCCTTGCTATGTGAAATACTTCTAAATTTGTTATCTATCTTCCCTTGACCTTTTACCATGCTAGCTgttttg-ttttcctcataactaagattgccccattctcacaaccc---ttctttatttactaaactttttaattttgttgccattctctgaat--ttcttccagtttctctatgtatt i proCoq1.NW_012147997v1 I 30390 C 0 s otoGar3.GL873528 18318673 677 - 38779656 cctggagtccaaaatgaaaataaattactcactgtgcagaaacatggaaggcatgatatgatattttcaatgaaacaccattaagtagtctcctaatagtcatggttttgggtgttgcagtttaTAATACCATAAGGGGTTACATTTCCATGTGATTTTGAATAATTTAGCAATAAAACATAAATTTTTTATTCTTTAATGTCTAACTTTATTTTGCAT----TGTTTACACTTTGGCATTTTATTAGTGTTGAGGGATAGCATCTAGGATATTTGCATATTTATTTCTGCTATTCCTAG-AA-----AAAAGGAAATAATGGAGGTGACTTGGGCA----TATCAAGGAAGTTGACATTG--------TGGGTGATTACAATTATGATCCTCAAGTTAATTCTTAAAAATGAGATGTTT---TCACAC-AGAATAAAACTGGATAATTGACATGTCTCTGTGTATTTTGATTTCTTTCTAACAGTAAGTC------------TTACCAGTAAGAAATGGAATGCACAAT---------AGATCACTCCTTGATTGCTATGAACAATAGTTCTAAATTTATTATCTATCTTCCCTTGATCTTTTAACATGATAGTTGTTTTG-TTTTAAT-ATAACTAATATTACCACATTCTCACAACCC---TTCTTTATTTACTAAATtttttgatt---ttgctattctctaaat--ttcttccaatttctctatgtatt i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75809935 682 + 98207768 CAAGGTGTCCAAAATGAAAATAAATTACCCACTGTGTAGAAACATGGAAGTC-----ATGATATTTTTGATGAAATATCATTAAGCTGTCTCCTGGCAGTCCTGCTTTTGGGTGTTGCTGTTTATAATACCATCA-GGCTTATTTTTCTTTGAGGTTTCGAAAAATTTAGTAATAAAATAAAACTTTTGTGTTCTGTGAAGTACAACTTTTTCTTACACTGTTTGTTTACACTTTAGCATTCTGTGAGTGTTGAGGGATGTCATGTAGGGCATTTGTGTC--TATTTCTGTCATTTATAA-CAGTGGTGGGTATAAAGGATAGAGGTGTCTTGGGCATGTGTATCAAGCAAGATGGCATAG--------AAGATTATCATAGCTATGATTCTCAAGTTAGATCTTCAAGACGGGACTTTT---TCATACTCAAATAAAATTGGATAATTGACATGCCCGAGCATATT----TGCCTTTCCAACAATAAATC------------CTGTTAGTAAGATCATTAATGCATGTTTTGTTTTTGTTTTTTTCCTTTGCTTCAGGTAtaagctgactctaaatct----tctgtcttcccttgaccttttagcacgctagttattttg-ttttccttgtaagtaagatcgccccattctcacaaccccctttttttatttacttaactttttaatttggctgtgattctct-----------tctatctcttggtatact i mm10.chr16 C 0 C 0 s canFam3.chr31 11433230 671 + 39895921 cctggaatccaaaatgaaaataaattgcccactgtgcaaaaacatggaagtc-----atgatattcctgatggaacatctttaaatagtctcccagcagtcatggttttgggtgttactgcttacaataccatag-gggtcacaTTTCCATGAGATTTTGAATAAATTAGCAATAAAATACAAATTATTTATTCTGTAATGTCTATCTTTATTTTGTCC----TGTTTACACTCTAGCATTTTATTAGCACTGAGGGATGGTGTCCAGGTTATTTGCATCTTTATTTCTGCCATTCATGG-AA-------AAAGAAAGAATGAAAGTGACTTGGGTA----TATCAAACAAATCGGCGTTG--------TGAATGCTTACAATTAGAATCCTCAAGCTAATTCTTAAAAATGGATTTTTTTTCCCACATTCAAACGAAACTAGATAATTGACATGTCCTTGTATATT----TT-CTTTGTAACAATAGGTT------------CTACCACTAAGAACTTTAATCT----C---------ACTTTATCCTTTGCTTGCTATGTAAAATGGTTCTAAATTTACTATCTATCTTCCCTTGACCTCTTACCATGTGAGTTGTTTTGTTTTTTCTCATATCTAAGACTGCCCCATTCTCTCAATCC---TTCTGTATTAATTAAACTTTTTAATTTGGTTGATGTTCTCTGATTTGTTTTTCCAGGTTCTCGATGTGCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 628457 654 - 6883506 cctgaaggccaaaatgaaaataaattgcccactctgcagaaacatggaagcc-----atgttattccctgtgaaatcccattaaatagtctcttggcagtcatggtttgggatgtaattgtttaCAATACCTTAG-AGGTTACATTTCCATCAGATTTTGAATAATTTAGCAATAAAATACAAATTGTTTATTCTGTAATGTCTAATTTTATTTTGCAC----TGTTTATACCTTAGCATTTTATTAGTGTTGAGGGACAGTGTTCAAAATATTTGCATCTTTATTTCTGTCATTTATGG-AA-----AAAAAGAAAGAAGTGAGGTACCTTGGGCA----TATCAAACAGGTTGG-ATTGTGGA----TGGATGATGACCATTACAATCCTCAAGCTAATTCTTAAAAATGGGACCTTT---CC-TACTCAAAAGGAACTTGCTAATTGACATGTCTCTG--TATT----TTC--TTTTAGCA---------------------ACCAGGTAGAACTTTAAAGCACGAT---------AT----TCCCTTCTTTGCTATGTAATATGCTTCC-AATTTATTATTTATC--CCCTTGAAATTTTACCATGTTAGTTGGTTTG-TTTTTCTCATAAATAAGATTGccccattctctcaactt---ttctttatttactaaatttttaaatttggttgctgttttctgaat--tccttccaatttcttgatgtact i dasNov3.JH568778 C 0 C 0 e nomLeu3.chr25 1578313 7745 + 32716333 I a score=6929328.000000 s hg38.chr21_GL383578v2_alt 30341 453 + 63917 ttgatgaagaaaactcaaaacctgaattcttatggcttttaaaatgccaagtagggc--a-aaa--aaaattacctcccttg----tttttacatgtgatactgttattaacaactcT-TCAACTT-AGTGTGTA--TTTT---------TTGGGC-AAGAATACTTAGTGTTGACTAATCATTTCTATTTCCGTTTCTTTCCTTATAATCTTGAGGGCAATGCAT--AAAAAAA-A--CAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGGATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAATAAAGTTTGGGTATTAAATCAACAATATATTGACAATTATATAAAATCTG-AATGCCACCTTGCATCTACTATACTTTAGTAATGATGTAAATAGTATCACATTAAACATTCTTTTTGCCGATG----CTATTAT-AA------TTTT- s panTro5.chr21 867850 455 + 33445071 ttgatgaagaaaactcaaaacctgaattcttgtggcttttaaaatgccaagtagggc--agaaa--aaaattacctcccttg----tttttacatgtgatactgttattaacaactct-tcaactt-agtgtgta--tttt---------tttggc-aAGAATACTTAGTGTTGACTAATCATTTCTATTTCCGTTTCTTTCCTTATAATCTTGAGGGCAATGCAT--AAAAAAA-A-ACAG-AAAATAAAATTTAAAGCACGCAGCAGAGATGGAGGGGATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAATAAAGTTTGGGTATTAAATCAACAATATATTGACAATTATATAAAATCTG-AATGCCACCTTGCATCTACTATACTTTAGTAATGATGTAAATAGTATCACATTAAACATTCTTTTTGCCGATG----CTATTAT-AA------TTTT- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14552500 454 + 46275980 ttgatgaagaaaactcaaaacctgaattcttgtggcttttaaaatgccaagtagggc--agaaa--aaaattacctcccttg----tttttacatgtgatactgttattaacaactct-tcaactt-agtgtgta--tttt---------tttggc-aAGAATACTTAGTGTTGACTAATCATTTCTATTTCCGTTTCTTTCCTTATAATCTTGAGGGCAATGCAT--AAAAAAA-A--CAG-AAAATAAAATTTAAAGCACGCAGCAGAGATGGAGGGGATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAATAAAGTTTGGGTATTAAATCAACAATATATTGACAATTATATAAAATCTG-AATGCCACCTTGCATCTACTATACTTTAGTAATGATGTAAATAGTATCACATTAAACATTCTTTTTGCCGATG----CTATTAT-AA------TTTT- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 464596 453 - 13858734 ttgatgaagaaaactcaaaacctgaattcttatggcttttaaaatgccaagtagggc--agaaa--aaaattacctcccttg----tttttacatgtgatactgttattaacaactgt-tcaactt-agtgtgta--gttt---------tttggc-aAGAATACTTAGTGTTGACTAATCATTTCTA-TTCTGTTTCTTTCCTTATAATCTTGAGGGCAATGCAT--AAAAAAA-C--CAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGGATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCGAATAAACTTTGGGTATTAAATCAACAATATATTGACAATTATATAAAATCTG-AGTGCCACCTTGCATCTACTATACTTTAGTAATGATGTAAATAGTATCGCATTAAACATTCTTTTTGCCGATG----CTATTAT-AA------TTTT- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586058 453 + 32716333 TTAAAAAAAagaactcaaaaccttaattcttatggcttttaaaatgccaagtagggc--agaaa--aaaattacctccgttg----tttttacatgcgatactg-tattaacaactgt-tcaacgt-ggtgtcta--tttt---------tttggc-aagtatacttagtgttgactaatCATTTCTATTTCTATTTCTTTCCTTATAATCTTGAGGGTAATGCAT--TAAAAAA-A--CAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGGGGGGATCAAAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTTCGATATTTGCTAGGCAAATAAACTTTGGGTATTAAATCAATAATACATTGACAGTTATATAAAATCTG-AAAGCCAGCTTGTGTCTTCTATACTTTAGTAATGATGTAAATAGTATCACATTAAACATTCTTATTGCTGATG----CTATTAT-AA------TTTT- i nomLeu3.chr25 I 7745 I 1 s rheMac8.chr3 152657984 456 - 185818997 ttgatggagaaaactcaaaacctgagttcttatggcttttaaaatgccaagtagggc--a-gaa--aaaattacctcacttg----tttttacatgtgatactgttattaataactgt-tcaattt-agtgtgta-ttttt---------tttggc-aAGAATACTTAGTATTGACTAATCATTTCTATTTCTGTTTCTTTCCTTATAACCTTGAGGGCAATGCATTAAAAAAAA-A--CAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGCATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATGTGCTAGGCAAATAAACTTGGGGTATTAAATCAGCAATATATTGACAATTGTATAAAATCTG-AATGCCACTTTGCGTCTACTATACTTTAGTAATGATGTAAATTGTATCACATGAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i rheMac8.chr3 C 0 I 1 s macFas5.chr3 159465754 457 - 192294377 TTGATGGAGAAAACTCAAAACCTGAGTTCTTATGGCTTTTAAAATGCCAAGTAGGGC--A-GAA--AAAATTACCTCACTTG----TTTTTACATGTGATACTGTTATTAATAACTGT-TCAATTT-AGTGTGTATTTTTT---------TTTGGC-AAGAATACTTAGTATTGACTAATCATTTCTATTTCTATTTCTTTCCTTATAACCTTGAGGGCAATGCATTTAAAAAAA-A--CAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGCATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATGTGCTAGGCAAATAAACTTGGGGTATTAAATCAGCAATATATTGACAATTTTATAAAATCTG-AATGCCACTTTGCGTCTACTATACTTTAGTAATGATGTAAATTGTATCACATGAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i macFas5.chr3 C 0 I 1 s macNem1.NW_012019910v1 5910616 457 + 9440265 ttgatggagaaaactcaaaacctgagttcttatggcttttaaaatgccaagtagggc--a-gaa--aaaattacctcacttg----tttttacatgtgatactgttattaataactgt-tcaattt-agtgtgta-ttttt---------tttggc-aAGAATACTTAGTATTGACTAATCATTTCTATTTCTATTTCTTTCCTTATAACCTTGAGGGCAATGCATTTAAAAAAA-A-CCAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGCATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATGTGCTAGGCAAATAAACTTGGGGTATTAAATCAGCAATATATTGACAATTATATAAAATCTG-AATGCCACTTTGCGTCTACTATACTTTAGTAATGATGTAAATTGTATCACATGAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i macNem1.NW_012019910v1 C 0 I 1 s cerAty1.NW_012002954v1 5650269 458 + 21915920 ttgatggagaaaactcaaaacctgagttcttatggcttttaaaatgccaagtagggc--a-gaa--aaaattacctcacttg----tttttacatgtgatactgttattaataactgt-tcaattt-agtgtgtatttttt---------tttggc-aAGAATACTTAGTATTGACTAATCATTTCTATTTCTATTTCTTTCCTTATAGCCTTGAGGGCAATGCATTTAAAAAAA-AAACAC-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGCATCA-AGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAATAAACTTGGGGTATTAAATCAGCAATATATTGACAATTATATAAAATCTG-AATGCCACTTTGCGTCTACTATACTTTAGTAATGATGTAAATTGTATCACATTAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i cerAty1.NW_012002954v1 C 0 I 1 s chlSab2.chr2 12294976 457 - 90373283 TTGATGGAGAAAACTCAAAACCTGAATTCTTACGGCTTTTAAAATGCCAAGTAGGGC--A-GAA--AAAATTACCTCACTTG----TTTTTACATGTGATACTGTTATTAATAACTGT-TCAATTT-AGCGTGTA--TTTT---------TTTGGC-AAGAATACTTAGTATTGACTAATCATTTCTATTTCTATTTCTTTCCTTATAACCTTGAGGGCAATGCATTAAAAAAAATA-CCAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGCATCACAGGA--------AGGTGGTATTTTGTCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAGTAAACTTTGGGTATGAAATCATCAATATATTGACAATTGTATAAAATCTG-AATGCCACCTTGCGTCTACTATACTTTAGTAATGATGTAAATTGTATCACATTAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i chlSab2.chr2 C 0 I 1 s manLeu1.NW_012107264v1 622658 457 + 1337817 ttgatggagaaaactcaaaacctgagttcttatggcttttaaaatgccaagtagggc--a-gaa--aaaattatctcacttg----tttttacatgtgatactgttattaataactgt-tcaattt-agtgtgta-ttttt---------tttggc-aCGAATACTTAGTATTGACTAATCATTTCTATTTCTATTTCTTTCCTTATAACCTTGAGGGCAATGCATTTAAAAAAA-A-ACAG-AAAATAAAATTTAAAGCATGCAGCAGAGATGGAGGGCATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCACCTGTGATATTTGCTAGGCAAATAAACTTGGGGTATTAAATCAGCAATATATTGACAATTATATAAAATCTG-AATGCCACCTTGCGTCTACTATACTTTAGTAATGATGTAAATTGTATCACATTAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i manLeu1.NW_012107264v1 C 0 I 1 s colAng1.NW_012116933v1 601217 456 - 3237654 TTGATAGAGAAAACTCAAAACCTGAATTCTTATGACTTTTAAAATGCCAAGTAGGGC--A-GAA--AAAATTACCTCACTTG----TTTTTATATGTGATACTGATATTAATAACTGT-TCAATTT-AGTGTGTA---TTT---------TTTGAC-AAGAATACTTAGTATTGACTAATCATTTCTATTTCTATTTCTTTCCTTATAACCTTGAGGGCAATGCATTAAATAAAA-AAACAG-AAAATAATATTTAAAGCATGTAGCAGAGATGGAGGGGATCACAGGA--------AGGTGGTATTTTGGCTTTTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAATAAACTTCGGGTATTAAATCAGCAATATATTGACAATTATATAAAATCTG-AATGCCACCTTGCATCTACTATACTTTAGTAATGATGTAAATTGTATCACATTAAACATTCTTATTGCCGATG----CTATTAT-AA------TTTT- i colAng1.NW_012116933v1 C 0 I 1 s calJac3.chr21 19132860 463 + 50472720 TTAATGGAGAAAACTCAAAACCTAAATTCTTGTGGCTTTTAAAATGCCAAGTAGGGC--A-AAA--AAAATTACCTCACTTGTTTTTTTTTTCATGTGATACTCTTATTAACC-GTGT-TCAATTT-AGTGTGTA--TTTTTTGTTGTTGTTTGGC-AAAAATACTTAGTATTGACTAATCCTTTCTATTTCTAATTCTTTTCTTATAACCTTGACAGTGATGCAT----AAAAA-A--CAG--AAATAAAATTTAAAGTATGTGGCAGAGATGGAGGGGATCAGAGGA--------AGGCGGTATTATGGCTTCTCAAAATTAGCTTA-GAGTCTGTGATATTTGCTAGGCAAATAAACTTTGGGTATTAAATCAACAATATATTGACAATTACGTAAAATCTG-AATGCCATCTTTTGTCTACGATACTTTAGTAATGATGTAAATAGTATCACATTAAACATTATTATTGCTGATG----CTATTATAAA------TTTT- i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2481603 457 + 13128814 ttaatggagaaaactcaaaacctaaattcttgtggcttttaaaatgccaagtagggc--a-aaaacaaaattacctcacttg----tttttacatgtgacactcttattaaCCAGTGT-TCAAGTT-AGTGTGTA--TTTTTTGTTGTTGTTTGGCAAAAAATACTTAGTATTGACTAATCCTTTCTAT------TTCTTTCCTTATAACCTTGACGATGATGCAT----AAAAA-A--CAG-AAAATAAAATTTAAAGTATGCAGCAGAGATGGAGGGGATCAGAGGA--------AGGTGGCATTACGGCTTCTCAAAATTAGCTTA-GCATTTGTGATATTTGCTAGGCAAATAAACTTTGGGTATTAAATCAACAATATATTGACAATTACATAAAATCTG-AATGCCATCTTGTGTCTACTATACTTTAGTAACGATGTAAATAGTATCACATTAAACATTATCATTGCTGATG----CTATTAT-AA------TTTT- i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7019120 464 - 14377064 CTAATGGAGAAAACTCAAAACCTAAATTCTTGTGGCTTTTAAAATGCCAAGTAGGACCAA-AAAAAAAAATTACCTCACTTG----TTTTTACATGTGATAATCTTATTAACCAGCAT-TCAATTT-AGTGTGTA--TTTTTTGTTGTTGTTTGGC-AAAAATACTTAGTATTGACTAATCCTTTCTATTTCTATTTCTTTCCTTATAACCTTGATGGTGATGCAT----AAAAA-A--CAG-AAAATAAAATTTAAAGCATGTGGCAGAGATGGAGGGGATCAGAGGA--------AGGTGGTATTATGGCTTCTCAAAATTAACTTA-GCATCTGTGATATGTGCTAGGCAAATAAACTTTGGGTATTAAATCAACCATATATTGACAATTACATAAAATCTG-AATGCCATCTTGTATCTACTATACTTTAGTAATGATGTAAATAGTATCACATTAAACGTTATTATTGCTGATG----CTATTAT-AA------CTTT- i cebCap1.NW_016107322v1 C 0 I 1 s aotNan1.NW_018487195v1 6066883 461 + 9889416 ttaatggagaaaactcaaaacctaaattcttgtggcttttaaaatgccaagtagggc--a-aaaa-aaaattacctcacttg----tttttatatgtgatactcttattaaCCAGTGT-TTGATTT-AGTGTGCA--TTTTTTGTTGTTGTTTGGC-AAAAATACTTAGTATTGACTAATCCTTTCTATTTCTATTTCTTTCCTTATAACCTTGACGGTGATGCAT----AAAAA-A--CAG-AAAATAAAATTTAAAGTATGCGGCAGAGATGGAGGGGATCAGAGGA--------AGGTGGTATTATGGCTTCTCAAAATTAGCTTA-GCATCTGTGATATTTGCTAGGCAAATAAACTTTGAGTATTAAATCAACAATATATTGACAATTACATAAAATCTG-AATGCCACCTTGTGTCTACTATACTTTAGTAATGATGTAAATAGTATCACATTAAACATTATTATTGCTGATG----CTATTAT-AA------TTTT- i aotNan1.NW_018487195v1 C 0 I 1 s micMur3.chr31 16836249 442 + 47401472 tcaacaaagaaaactcaaaacctgaattctgagagcttttaaaatgccaactagggt--a-ga---aaaattacctcacttg----tttttacatgtaatagtcttactaataacagt-tcaattc-agtgttta--tttt---------tctggc-aggattatttattattgacttatcttTTCTAT------TTCTTTCCTTGTAACCTTGAGGGCAATGCAT----AATGA-A--CAGAAAAATAAACTTTAAAGAATGGGGCAGAGATTGGGGGG--CAAAGGA--------AGGTGGTATTATAGTTTATCAAAATTAGCTTA-GCATCTGTGGTATTTGCTAGGCAAATAAACTTTGGATATTAAATCAACAATATATTGACAATTACACAAAATTTG-AATGTCACCCTGCCTCTACCATACTTCAGCAATGATGTAAATAGGATCACATTAAACCTTCTTATTGCTGA-G----CTATCAT-AA------TTTT- i micMur3.chr31 C 0 I 1 s proCoq1.NW_012147997v1 1197845 440 - 2312742 tcaacaaagaaaactcaaaacctgagttctgagggcttttaaaatgccaactagagc--a-ga---acaattacctcacttg----tttttacatgtaatagtcttactaacaacagt-ccaattc-agtgttta--tttt---------tctggc-aagattatttattattgacttatCCTTTCTAT------TTCTTTCCTTATAACCTTGAGGGCAATGCAT----AATGA-A--CAG-AAAATAAA-TTTAAAGCATGGGGCAGAGATTTGGGGG--CATAGGA--------AGGTGGTATTATAGTTTCTCAAAATTAGCTTA-CCATCTGTGATATTTGCTAGGCAAATAAACTTTGGGTATTAAATCAACAATATATTGACAATTACACAAAATTTG-AATGTCACTCTGCCTCTACCATACTTCGGCAATGATGTAAATAGGATCACATTAAACCTTCTTATTGCTGA-G----CTATCAT-AA------TTTT- i proCoq1.NW_012147997v1 C 0 I 21 s otoGar3.GL873528 18319350 426 - 38779656 tcaacaaagaaaactcaaaacctgaattctgtgggcttctaaaatgccagctagggc--a-ga---aaaattacctcacttg----t------------tAGTATTATAAACAAGGGT-CTAATTC-AGTGTTTA--TTTT---------TATGGC-AAGAATATTTATTATTGACTTATGC-TTCTAC------TTCTTTCCTTATAACCTTGAGGGCAATGCCT----AATGA-A--AAG-AAACTAAAATTT--AGCATGGGGCAGAGATGGGTGTG--TCCAGGA--------AGATGGTATGATAGTTTCTCAAAATTAACTTAGCCATCTGTGTTATTTGCTAGGCAAATAAACTTTGGATATTACATCAACACTATATTGACAATTACACAAAA-TTG-AATGTCACTCTTCCTCTACCATACTTCAGCAATGATGTAAATAGGATCACATTAAATCTTCTTATTTCTGA-G----CTATCAT-AA------TTTT- i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75810617 436 + 98207768 ttaacaaagaaaccccaaa----gaatgcagaacgcttttaaaatgccaagtagggc--a-ga---aaaattacctcacttg----tttttacgtgtgatact--tatgaacaatcat-caaattc-agtatttg--tttt---------tctggc-aggaatattcattattgactcatCCTTTCTAG------TCCCTTTCTTGTAACCTTGAAGGCAATGCAT----AATGA-A--TAT-AAAATGAAATGCAAAGCATCGGGACGAGATTGGGGG--TCACAGGA--------AGGTGGCATTATGGTTTCTCAAAATTAGCTTA-GCATCTGTGATATTTGTTAGGCAAACAAACTTTAGGCATTAAATCAACAGTATATTGACAGTGGTTCAAAATTCA-AATGCTACCCAGGCACTGTCTTACTTCAGCAGCAGTGTAAATAGAATCACATTAAACATTCTTATTGCTGATG----TTATCAT-AA------TTTT- i mm10.chr16 C 0 I 1 s canFam3.chr31 11433901 435 + 39895921 TTAACAAAGAAAACTAAAAACCTGAGTGCTGAGGACTTTT-Aaatgccaagtaggga--a-ga---aaaattat-----ttg----tttctgcatgtaatactcttattaacaacagtcccaattc-agtgttta--tttt---------tctggc-aagaatattcattattgactcatCCTTTTTAT------TCCTTTCCTTATAACCTTGAGGGCAATACGT----AATGA-A--CAG-AAAATGAAACTTGAAGCATAGGGCAGAAACTGGGGG--TCACAAGA--------AGGTGGTATTACAGTTTTTCAAAATTAGCTTA-GCATTTGTGATATTTGCTAGGCAAACAAACTTTGGGTATTAAATCAACAATATATTGACAATTACACACAATTCA-AATGCCAC--TGCCTCTATCAGACTTCAGCAGTGTTGTAAATAGGCTCACATTAAACACTCTTATTGCTGATG----TTATCAT-AA------TTTT- i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 629111 458 - 6883506 ttcacaaagaaaacccaaaacttgaattctgagggcttt--aaatgccaagtaggac--a------aagattacctcacttg----attttccgtgtgatactcttattaa-aacagt-ccaacacAAGTATGTG--TTTT---------TCTGGT-AAGATTATTCATTATTGGGTCATCCTTGCTAT------TCCTTTTCTTATAATCTTGAGGGCAATACAT----AATGA-A--CAG-AAAGTGAAATTTTAAGCATGGGGAAGAGATTTGGGG--TCACAAGATTGGTATTATATGGCATTATGATTTCTTAAAGTTAGCTTA-GTATCTGTGATATTTACCAGGCAAACAAACTTTGAATATTAAATCAATAATATATCAACAACCATAAAAAATTTGAAATGCCACCCTTCCTTTACCATATTTCAGCAGCTATGTAAATAGTATCACATTAAAGATTTTTATTGCTTATAATTTCTGTTAC-AAAGCCTGTCTTG i dasNov3.JH568778 C 0 C 0 a score=217035.000000 s hg38.chr21_GL383578v2_alt 30794 14 + 63917 ACTTAGTTCCTGTA s panTro5.chr21 868305 14 + 33445071 ACCTAGTTCCTGTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14552954 14 + 46275980 ACCTAGTTCCTGTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465049 14 - 13858734 ACTTAGTTCCTGCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586512 14 + 32716333 ACTTAGTTCCTGCA i nomLeu3.chr25 I 1 C 0 s rheMac8.chr3 152658441 14 - 185818997 ACTTAGTTCCTGCA i rheMac8.chr3 I 1 C 0 s macFas5.chr3 159466212 14 - 192294377 ACTTAGTTCCTGCA i macFas5.chr3 I 1 C 0 s macNem1.NW_012019910v1 5911074 14 + 9440265 ACTTAGTTCCTGCA i macNem1.NW_012019910v1 I 1 C 0 s cerAty1.NW_012002954v1 5650728 14 + 21915920 ACTTAGTTCCTGCA i cerAty1.NW_012002954v1 I 1 C 0 s chlSab2.chr2 12295434 14 - 90373283 ACTTAGTTCCTGCA i chlSab2.chr2 I 1 C 0 s manLeu1.NW_012107264v1 623116 14 + 1337817 ACTTAGTTCCTGCA i manLeu1.NW_012107264v1 I 1 C 0 s colAng1.NW_012116933v1 601674 14 - 3237654 ACTTAGTTCCTGCA i colAng1.NW_012116933v1 I 1 C 0 s calJac3.chr21 19133324 14 + 50472720 ACTTCGTTCCTGCA i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2482061 14 + 13128814 ACTTCATTCCTGCA i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7019585 14 - 14377064 ACTTCGTTCCTACA i cebCap1.NW_016107322v1 I 1 C 0 s aotNan1.NW_018487195v1 6067345 14 + 9889416 ACTTCGTTCCTGCA i aotNan1.NW_018487195v1 I 1 C 0 s micMur3.chr31 16836692 14 + 47401472 ATTTAGTTTCTACA i micMur3.chr31 I 1 I 4 s otoGar3.GL873528 18319777 14 - 38779656 ATTTCGTTTCCACA i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75811054 14 + 98207768 ATTTAGTTCCTACA i mm10.chr16 I 1 I 4 s canFam3.chr31 11434337 14 + 39895921 ATTTAGTTCCTACA i canFam3.chr31 I 1 I 3 s dasNov3.JH568778 629569 14 - 6883506 ATTTAGTTCTTGCA i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1198285 21 - 2312742 I a score=2851157.000000 s hg38.chr21_GL383578v2_alt 30808 203 + 63917 ----GTTCTTCAGCTTTTAGTTTTACACTTCCAACTAATCATCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ACTGACCGTAAGTATGAATTCAAGGGTATTTCatagcattttacagattgt--aaagagatttcaggtacataatctcacttgatcctacagccttatgg-------cgtggccagaaaataaattctt s panTro5.chr21 868319 203 + 33445071 ----GTTCTTCAGCTTTTAGTTTTACACTTCCAACTAATCACCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ACTGACCGTAAGTATGAATTCAAGGGTATTTCataacattttacagattgt--aaagagatttcaggtacataatctcacttgatcctacagccttatgg-------cgtggccagaaaataaattctt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14552968 203 + 46275980 ----GTTCTTCAGCTTTTAGTTTTACACTTCCAACTAATCACCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ACTGACCGTAAGTATGAATTCAAGGGTATTTCatagcattttacagattgt--aaagagatttcaggtacataatctcacttgatcctacagccttatgg-------cgtggccagaaaataaattctt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465063 203 - 13858734 ----TTTCTTCAGCTTTTAGTTTTACACTTCCAACTAATCACCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ACTGACCGTAAGTATGAATTCAAGGGTATTTCatagcattttacagattgt--aaagagatttcaggtacataatctcacttgatcttacagccttatgg-------cgtggccaggaaacaaattctt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586526 203 + 32716333 ----GTTCTTCAGCTTTTAGTTTTACAGTTCCAACGAATCACCTCATTTTATCATTTTACTTTTATTCTCGATACAAGTCCATACTC----------------------------------------------------------------ACTGACAGTAAGTATGAATTCAAGGatatttcatagtattttacagattgt--aaagagatttcatgtacataatctcacttgatcctacagccttatgg-------agtggccagaaaataaattctg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658455 203 - 185818997 ----GTTCTTCAGCTTTCAGTTTTACACTTCCAACGAATCACCTCAGTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ATTGACCATAAGTATGAATTCAAGGGTATGTCTtagtattttacagatcgt--aaagagacttcgtgtacaaaatctcccttgatcctacaaccttatgg-------agtggccagaaaataagttctt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466226 203 - 192294377 ----GTTCTTCAGCTTTCAGTTTTACACTTCCAACGAATCACCTCAGTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ATTGACCATAAGTATGAATTCAAGGGTATGTCTtagtattttacagatcgt--aaagagacttcgtgtacaaaatctcccttgatcctacaaccttatgg-------agtggccagaaaataagttctt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911088 203 + 9440265 ----GTTCTTCAGCTTTCAGTTTTACACTTCCAACGAATCACCTCAGTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ATTGACCATAAATATGAATTCAAGGGTATGTCTtagtattttacagattgt--aaagagacttcgtgtacaaaatctcccttgatcctacaaccttatgg-------agtggccagaaaataagttctt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5650742 267 + 21915920 ----GTTCTTCAGCTTTCAGTTTTACACTTCCAACGAATCACCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTTACTGACCATAAGTATGAATTCAAGGGTATGTCTTAGTATTTATTCTAGATACAAGTCCATACTTACTGACCATAAGTATGAATTCAAGGGTATGTCTtagtattttacagatcgt--aaagagacttcgtgtacaaaatctcccttgatcctacaaccttatgg-------agtggccagaaaataagttctt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295448 202 - 90373283 ----GTTCTTCAGCTTTCAGTTTTACGCTTCCAACGAATCACTTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCTATACTT----------------------------------------------------------------ATTGACCGTAAGTATGAATTCAAGGGTATGTCTtagtattttacagatcgt--gaagagatttcgtgtacaaaatgtcacttgat-ctacagccttttgg-------agtggccagaaaataaattctt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623130 203 + 1337817 ----GTTCTTCAGCTTTCAGTTTTACACTTCCAACGAATCACCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ATTGACCATAACTATGAATTCAAGGGTATGTCTtagtattttacagatcgt--aaagagatttcgtgtacaaaatctcccttgatcctacaaccttatga-------agtggccagaaaataaattctt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 601688 203 - 3237654 ----GTTCTTCAGCTTTCAGTTTTACACTTCCAACGAATCGCCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTT----------------------------------------------------------------ATTGACCATAAGTATGAATTCAAGGCTATGTCTtagtattttacagatcgt--aaagagatttcctgtacaaaatctcacttgatcctacagccttatgg-------agtggccagaaaataaattctt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133338 202 + 50472720 ----GTTTTTCAAATTTTATTTTTACACTTCCAACTGATCACCTCATTTTATCATTTTACTTTTGTTCTAGATACA-GTCCATACTG----------------------------------------------------------------ACTGATCATAAGTATTAATTCAAGGGTATTTCatagtattttacagattgt--aaagagatttcaggtacgtaatctcacttgatcctacagccttatgg-------agtgggaagaaaatacattctt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482075 202 + 13128814 ----GTTTTT-AGATTTTATTTTTACACTTCCAACTAATCATCTCATTTTATCATTTTACTTTTATTCTGGATACAGGTCCATAGTG----------------------------------------------------------------ACTAATCATAAGTATGAATTCAAGGatatttcatagtattttacagattgt--aaagagatttcaggtacataatctcacttgatcctacagccttatgg-------aatgggaagaaaatacattctt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7019599 203 - 14377064 ----GTTTTTCAGATTTTATTTTTACACTTCCAACTAATCACCTCATTTTATCATTTTACTTTTATTCTAGATACAAGTCCATACTG----------------------------------------------------------------ACTGATCATAAGTATGAATTCAAGGGTATTTCatagtattttacagattgt--aaagagatttcaggtacataatctcacttgatcctacagccttatgg-------agtgggaagaaaatacattctt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067359 202 + 9889416 ----GTTTTTCAGATTTTATTTTTACACTT-CAACTAATCACCTCATTTTAACATTTTACTTTTATTCTAGATACAAGTCCATACTG----------------------------------------------------------------ACTGATCATAAGTATGAATTCAAGGGTATTTCatagtattttgcagattgt--aaagagatttcaggtacataatctcacttgatcctacagccttatgg-------agtgggaagaaaatacattctt i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16836710 205 + 47401472 ----GTTTTCTAGCTTTTATTTTTACCCTTCCAACTAATCACCTCATCTTATCATTTTATGTTTACTCTAGACACAAGTCCATGCTT----------------------------------------------------------------CCTGGCCATAAGTATGAATTTAAAGATATTTCATATTATTGTGTAGTTTATAAAAAGAGATTTCATGTATATAATCCCACTTGATTCTACAGCCTTATGG-------AGTGCACAGAAAAAAAATTCTT i micMur3.chr31 I 4 I 581 s proCoq1.NW_012147997v1 1198306 201 - 2312742 ------GTTCTGGCTTTTATTTTTACCCTTCCAACTAGTCACCTCATCTTATCATTTTACGTTTACTCCAGTTACAAGTCCATGCTT----------------------------------------------------------------CCTGGCCATAAGTATGCATTTAAAGatatttcatattattttgtagtttataaaaagaaatttcatgtatgtaatctcacttgat--tacagccttatgg-------agtatgcagaaaagaaattctt i proCoq1.NW_012147997v1 I 21 C 0 s otoGar3.GL873528 18319791 208 - 38779656 ----GTTTTCTGGCTTTTATTTTTA-CCTTCCAATTAATCATGTCATCTTATCATTTTCCTTTTACTTTTGATACAAGTCCAGGCTT----------------------------------------------------------------CCAGGTTATAAGTATGAATTTAAAGatattttatattattgt---gtttataaaaaaagatttcccagttgttgtctcacttgatcctgcagtattatggaagaagaagcaggaagaaaggaaatgctt i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75811072 193 + 98207768 ----ATTTTATAGCTTTTATCTTTACACTTCAAACTAATCACCTCATGCTGTCATTTCAGCTCT--TCGAGGGAAGAGTTGCCCCTT----------------------------------------------------------------TGAGGAC---AGAACGAAT----AAGTattttacaccactggacagtttat--aaaacaatttcatatacacactgacatttgatttcacagcctcgtgt-------agtagccataaaagaattttt- i mm10.chr16 I 4 C 0 s canFam3.chr31 11434354 202 + 39895921 ----GGTTTTTAGCTTTTA-TCTTACATTCCCAAATAATCACTTTGTGCTGTGATTTCATTTTTATTGTAGGTATGAGTTCATAATT----------------------------------------------------------------CCTGACCATAAAGATAAATTCAGGGatattttatggtactttacagtttgt--aaagagctttcatgtatatgttctcatttaatcccatggctttatag-------ggtggacagaaaatggattctt i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 629583 197 - 6883506 GACAGTTTTCTAG-TTTTGTCTTTAAATTTCCAAATAAACATCTCGTGCTATCACTTAACTTTTTCTCTAGATATAACCTCATGCTT----------------------------------------------------------------CCTGAGCACAAATATGAATTTGAGAATGttttatggtactttacagcgtat--aaagaggtttcaggtatatgatctcacttggtcctgta----------------tttgggcagagaagaaattctt i dasNov3.JH568778 C 0 C 0 a score=108015.000000 s hg38.chr21_GL383578v2_alt 31011 6 + 63917 agctcc s panTro5.chr21 868522 6 + 33445071 agctcc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553171 6 + 46275980 agctcc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465266 6 - 13858734 agctcc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586729 6 + 32716333 agctct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658658 6 - 185818997 agctcc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466429 6 - 192294377 agctcc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911291 6 + 9440265 agctcc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651009 6 + 21915920 agctcc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295650 6 - 90373283 agctcc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623333 6 + 1337817 agctcc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 601891 6 - 3237654 agctcc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133540 6 + 50472720 agctcc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482277 6 + 13128814 agctcc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7019802 6 - 14377064 agctcc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067561 6 + 9889416 agctcc i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1198507 6 - 2312742 agctcc i proCoq1.NW_012147997v1 C 0 I 738 s otoGar3.GL873528 18319999 6 - 38779656 agctct i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75811265 6 + 98207768 agatcc i mm10.chr16 C 0 C 0 s canFam3.chr31 11434556 6 + 39895921 ggttcc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 629780 6 - 6883506 agctcc i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16836915 581 + 47401472 I a score=444027.000000 s hg38.chr21_GL383578v2_alt 31017 39 + 63917 gctttacagatg-g-aaatggaggctcagacgacttctcag s panTro5.chr21 868528 39 + 33445071 gctttacagatg-g-aaatggaggctcagacgacttctcag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553177 39 + 46275980 gctttacagatg-g-aaatggaggctcagacgacttctcag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465272 39 - 13858734 gctttacagatg-g-aaatggaggctcagacgacttctcag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586735 39 + 32716333 gctttacagatg-g-aaatggaggctcagacaacttctcag i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658664 39 - 185818997 actttacagatg-g-aaatggaggctcgggtgacttctagg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466435 39 - 192294377 actttacagatg-g-aaatggaggctcgggtgacttctagg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911297 39 + 9440265 actttacagatg-g-aaatggaggctcgggtgacttctagg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651015 39 + 21915920 actttacagatg-g-aaatggaggctcggatgacttctagg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295656 39 - 90373283 actttacagagg-g-aaatggaggctcggatgacttctagg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623339 39 + 1337817 actttacagatg-g-aaatggaggctcggatgacttctagg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 601897 39 - 3237654 actttacagatg-g-aaatggaggctcggatgacttctagg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133546 39 + 50472720 acttcacagatg-g-aaatgggggctcagatgacttctagg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482283 39 + 13128814 acttcacagatg-g-aaatggagactcagatgacttctagg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7019808 39 - 14377064 acttcacagatg-g-aaatggaggctcaggtgacttctagg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067567 39 + 9889416 acttcacagatg-g-aaatgggggctcagatgacttctagg i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18320005 40 - 38779656 gctttacagatgaa-aaatggagactcaaatggcttcagaa i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75811271 33 + 98207768 attttgcaatga-a-gaaTGGAGGACCAA------TTTGGG i mm10.chr16 C 0 I 2 s canFam3.chr31 11434562 40 + 39895921 acttcacagatg-gaaaatcaaggttcagatcacttaagaa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 629786 38 - 6883506 attttacatttg-ggaaattaatcct--gatgccataagag i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1198513 738 - 2312742 I e micMur3.chr31 16836915 581 + 47401472 I a score=1530301.000000 s hg38.chr21_GL383578v2_alt 31056 113 + 63917 gctgtc-taatggattagca-aatgt------ggctaa-cacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt----------ctttgcttgttccaatacacATCTTC s panTro5.chr21 868567 113 + 33445071 gctgtc-taatggattagca-aatgt------ggctaa-cacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt----------ctttgcttgttccaatacacATCTTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553216 113 + 46275980 gctgtc-taatggattagca-aatgt------ggctaa-cacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt----------ctttgcttgttccaatacacATCTTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465311 113 - 13858734 gctgtc-taatggattagca-aatgt------ggctaa-cacatggatacccattagtagaacctgggccaactaacagttcttttgacccctggt----------ctttgcttgttccaatacacATCTTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586774 115 + 32716333 gctgtc-taatggattagca-aatgt------ggctaatcacatggatacgcattagtagaacctgggccaacaaacagttcttttgacccctggt---------cctttgcttattccaatacacATCTTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658703 115 - 185818997 gctgtc-taatggcttagca-aatgt------ggctaatcacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt---------cttttgcttgttccaatacacATCTTC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466474 115 - 192294377 gctgtc-taatggcttagca-aatgt------ggctaatcacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt---------cttttgcttgttccaatacacATCTTC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911336 115 + 9440265 gctgtc-taatggcttagca-aatgt------ggctaatcacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt---------cttttgcttgttccaatacacATCTTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651054 115 + 21915920 gctgtc-taatgggttagca-aatgt------ggctaatcacatggatacccattagtagaacctgggccgacaaacagttctttggacccctggt---------cttttgcttgtttcaatacacATCTTC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295695 115 - 90373283 gctgtc-taatgggttagca-aatgt------ggctaatcacatggatacccagtagtagaacctgggccaacaaacagttcttttgacccctggt---------cctttgcttgttccaatacacATCTTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623378 115 + 1337817 gctgtc-taatgggttagca-aatgt------ggcgaatcacatggatacccattagtagaacctgggccaacaaacagttcttttgacccctggt---------cttttgcttgttccaatacacATCTTC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 601936 115 - 3237654 gctgtc-taatgggttagca-aatgt------ggctaatcacatggatacccattagtagaacctgggccaacaaacagttcttttggcccctggt---------cttttgcttgttccaatacacATCTTC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133585 114 + 50472720 g-tgtc-taatgggttagca-aatgt------ggctaatcttatggatacccattagtagaacctgggctaacaaacaggtctttggacccctggt---------ccattgctttttccaatacaTATCTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482322 115 + 13128814 gttgtc-taatgggttagca-aatgt------ggctaatcttatggatacccattagtagaacctgggctaacaaacaggtctttggacccctggt---------ccattgcttgttcgaatacaTATCTTC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7019847 115 - 14377064 gttgtc-taatgggctagca-aatgt------ggctaatcttatggatacccattagtacaacctgggctaacaaacaggtcttcagacccctggt---------ccattgcttgttccaatacaTATCTTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067606 111 + 9889416 gttgtc-caatgggttag-----ggt------ggctcatcttatggatacccattcgtagaacctggactaacaaacaggtcttcagacccctggt---------ccattgcttgttccaatacaTATCTTC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16837496 115 + 47401472 GCTGTC-TAATaggttagca-aatgt------ggctaatcacatggacagccattagtagaacttgggccagcacacaggtccttggaatcctggt---------cccttgctcattcaagtacacaactct i micMur3.chr31 I 581 C 0 s otoGar3.GL873528 18320045 116 - 38779656 gctgtcttaatgggttagca-aatgt------ggctaattacatggatacccattaagagaacctgggctagcacacatgtccgttgactcctggt---------cccttatttattcaagtacataactct i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75811306 124 + 98207768 GCAGTC-TAGAGCATTGAAA-CACGTAGCCTAAGCTAATCATGTGGGCACCCAGT------GTCTGGGATGGCACATAGCTCCTTTGGCCGCTAGtgtaaaggtaacttttattcttctgatgtaattctcc i mm10.chr16 I 2 I 184 s canFam3.chr31 11434602 115 + 39895921 gctgtc-taatgaattagca-aatgT------GAATAATCACAGGAATACCTATTTGAAGAACTTGGGCTGGTGTGTAATTCCTTTGACCCCTGAT---------TTATTGGTAGTTCAAGTTCACAACTTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 629824 116 - 6883506 tttgct-tgatgagttagcagaatgc------agctggtcacatgattacccattagttgaacttgggcaagtacataggtcttttgactcctagt---------ccagtgctctGACAAGTACAGAAATTT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1198513 738 - 2312742 I a score=181498.000000 s hg38.chr21_GL383578v2_alt 31169 20 + 63917 AC-AGAAAAGTT-TGG-------------------TTA-TAA- s panTro5.chr21 868680 20 + 33445071 AC-AGAAAAGTT-TGG-------------------TTA-TAA- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553329 20 + 46275980 AC-AGAAAAGTT-TGG-------------------TTA-TAA- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465424 20 - 13858734 AC-AGAAAAGTT-TGG-------------------TTA-TAA- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586889 20 + 32716333 AC-AGAAAAGTC-TGG-------------------TTA-TAA- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658818 20 - 185818997 AC-AGAAAAGTT-TGC-------------------TTA-TAA- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466589 20 - 192294377 AC-AGAAAAGTT-TGC-------------------TTA-TAA- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911451 20 + 9440265 AC-AGAAAAGTT-TGC-------------------TTA-TAA- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651169 20 + 21915920 AC-AGAAAAGTT-TGC-------------------TTA-TAA- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295810 20 - 90373283 AC-AGAAAAGTT-TGG-------------------TTA-TAA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623493 20 + 1337817 AC-AGAAAAGTT-TGC-------------------TTA-TAA- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602051 20 - 3237654 AC-AGAAAAGTC-TGG-------------------TTA-TAA- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133699 21 + 50472720 ACAAGAAAAGTT-TAG-------------------TTA-TAA- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482437 21 + 13128814 ACAAGAAAAGTT-TAC-------------------TTA-TAA- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7019962 21 - 14377064 ACAAGAAAAATT-TAG-------------------TTA-TAA- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067717 21 + 9889416 ACAATAAAAGTT-TAG-------------------TTA-TAA- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16837611 18 + 47401472 acaagAAAAGTT-CAG-------------------CTA----- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18320161 22 - 38779656 acAACAAAAGTT-CAG-------------------ATATTAT- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11434717 39 + 39895921 AC-AGGAAAGTT-TACCTTTTATTTATTTATATAttta-taa- i canFam3.chr31 C 0 I 188 s dasNov3.JH568778 629940 23 - 6883506 ACAAGGAAAGTTATAG-------------------CTT-TTGT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811430 184 + 98207768 I e proCoq1.NW_012147997v1 1198513 738 - 2312742 I a score=495832.000000 s hg38.chr21_GL383578v2_alt 31189 42 + 63917 TTTAGCTCTAGGTTTCATCACTGAGGTCAGACTATG----CCACAG- s panTro5.chr21 868700 42 + 33445071 TTTAGCTCTAGGTTTCATCACTGGGGTCAGACTATG----CCACAG- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553349 42 + 46275980 TTTAGCTCTAGGTTTCATCACTGGGGTCAGACTATG----CCACAG- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465444 42 - 13858734 TTTAGCTCTAGGTTTCATCACTGGGGTCGGACTATG----CCACAG- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586909 42 + 32716333 TTTAGCTCTAGGTTTCATCACTGGGGTCAGACTATG----CCACAG- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658838 42 - 185818997 TTTAGCTCTGTGTTTCATCATTGGGGTCAGATTATG----CCACAG- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466609 42 - 192294377 TTTAGCTCTGTGTTTCATCATTGGGGTCAGATTATG----CCACAG- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911471 42 + 9440265 TTTAGCTCTGTGTTTCATCATTGGGGTCAGATTATG----CCACAG- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651189 42 + 21915920 TTTAGCTCTGTGTTTCATCATTGGGGTCAGATTATG----CCACAG- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295830 41 - 90373283 TGT-GCTCTGTATTTCATCATTGGGGTCAGACTATG----CCACAG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623513 42 + 1337817 TTTAGCTCTGTGTTTCATCATTGGGGTCAGATTATG----CCACAG- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602071 42 - 3237654 TTTAGCTCTGTGTTTCATCATTGGGGTCAGACTATG----CCACAG- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133720 41 + 50472720 TTTAGCTCTGTGTTTCATCATTGGGGTTAGACTATG----CCA-AG- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482458 41 + 13128814 TTTAGCTCTTTGTTTCATCATTGGGGTTAGACTATG----CCA-AG- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7019983 41 - 14377064 TTTAGCTCTGTGTTTCATCATTGGGGTTAGACTATG----CCA-AG- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067738 41 + 9889416 TGTAGCTCTGTGTTTCATCATTGATGTTAGACTATG----CCA-AG- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16837629 42 + 47401472 TGTAACTCTATGTTTCATTGTTGGGCTTAGAGTATG----CCACAA- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18320183 42 - 38779656 TGTAACTCCCTTTTTCATTGTTGGGGTTAGACTTTG----CCATAC- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11434944 44 + 39895921 TTTAACTCT--GTTTCATCATTGAGTTTAGCCTACAATGCCTACAA- i canFam3.chr31 I 188 C 0 s dasNov3.JH568778 629963 41 - 6883506 TTTAACTCT--GTTTCTCCATTGAGCATAGACTATG----CCCACGA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811430 184 + 98207768 I e proCoq1.NW_012147997v1 1198513 738 - 2312742 I a score=288609.000000 s hg38.chr21_GL383578v2_alt 31231 19 + 63917 CATGTTGATGGAAGTACTT s panTro5.chr21 868742 19 + 33445071 CATGTTGATGGAAGTACTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553391 19 + 46275980 CATGTTGATGGAAGTACTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465486 19 - 13858734 CATGTTGATGGCAGTACTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586951 19 + 32716333 CATGTTGATGGCAGTACTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658880 19 - 185818997 CATGTTGATGGCAGTACTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466651 19 - 192294377 CATGTTGATGGCAGTACTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911513 19 + 9440265 CATGTTGATGGCAGTACTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651231 19 + 21915920 CATGTTGATGGCAGTACTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295871 19 - 90373283 CATGTTGATGGCAGTACTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623555 19 + 1337817 CATGTTGATGGCAGTACTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602113 19 - 3237654 CATGTTGATGACAGTACTT i colAng1.NW_012116933v1 C 0 I 316 s calJac3.chr21 19133761 19 + 50472720 AATATTGATGGCAGTACTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482499 19 + 13128814 TATATTGATGGCAGTACTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020024 19 - 14377064 CATATTGATGGCAGTACGT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067779 19 + 9889416 CATATTGGTGGCAGTACTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16837671 19 + 47401472 CATATTGATGGCAGTACTC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1199251 19 - 2312742 CATATTGATGGCAGTACTC i proCoq1.NW_012147997v1 I 738 C 0 s otoGar3.GL873528 18320225 19 - 38779656 CATATTGATGGAAGTATTC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11434988 19 + 39895921 TGTATCAATGGCGGGACTC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 630004 19 - 6883506 AATATCAATGTCAGGACTC i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811430 184 + 98207768 I a score=156795.000000 s hg38.chr21_GL383578v2_alt 31250 12 + 63917 AAGAGTAGATGG s panTro5.chr21 868761 12 + 33445071 AAGAGTAGATGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553410 12 + 46275980 AAGAGTAGATGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465505 12 - 13858734 AAGAGTAGATGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586970 12 + 32716333 AAGAGTAGATGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658899 12 - 185818997 AAGAGTAGCTGg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466670 12 - 192294377 AAGAGTAGCTGg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911532 12 + 9440265 AAGAGTAGCTGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651250 12 + 21915920 AAGAGTGGCTGg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295890 12 - 90373283 AAGAGTAGATGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623574 12 + 1337817 AAGAGTAGCTGg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602448 12 - 3237654 AAGAATAGATGG i colAng1.NW_012116933v1 I 316 C 0 s calJac3.chr21 19133780 12 + 50472720 AAGAGTAGATGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482518 12 + 13128814 AAAAGTAGACGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020043 12 - 14377064 AAGAGTAGACGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067798 12 + 9889416 AAGAGTAGATGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16837690 12 + 47401472 AAAAGTAAATAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1199270 12 - 2312742 AAAAGCAAATGG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18320244 12 - 38779656 AAAAGTAGATGG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435007 11 + 39895921 AAATGCAAAGG- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 630023 12 - 6883506 AAGTACTGATGG i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811430 184 + 98207768 I a score=3503325.000000 s hg38.chr21_GL383578v2_alt 31262 253 + 63917 AATGAAAATG----GAAAACATAAg-----aaggaaggaagaaagaaagtaagtcgaggaaggaGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCACAGGTCACCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTATTTAATGTGTAAAAGATGCCAGTAGG---AGGAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTCC---------------CAATTCGTGTGTGTG--------ATTTATGTTTGT s panTro5.chr21 868773 253 + 33445071 AATGAAAATG----GAAAACATAAg-----aaggaaggaagaaagaaagtaagtcgaggaaggaGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGT---TCAGTGGTACCACTGTCATAGGTCACCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTATTTAATGTGTAAAAGATGCCAGTAGG---AGGAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTCC---------------CAATTTGTGTGTGTG--------ATTTATGTTTGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553422 253 + 46275980 AATGAAAATG----GAAAACATAAg-----aaggaaggaagaaagaaagtaagtcgaggaaggaGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCACCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTATTTAATGTGTAAAAGATGCCAGTAGG---AGGAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTCC---------------CAATTTGTGTGTGTG--------ATTTATGTTTGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465517 253 - 13858734 AATGAAAATG----GAAAACATAAG-----AAGGAAGGAATAAAGAAAGTAAGTCGAGGAAGGAGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCACCAATCCAAATTTAATAATTAAATA-TAACTGAGCCATTTATTATTTAATGTGTAAAAGATGCCAGTAGA---AGGAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTCC---------------TAATTTGTGTGTGTG--------ATTTATGTTTGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1586982 256 + 32716333 AATGAAAATG----GAAAACATAAG-----AAGGAAGGGATAAAGAAGGTAAGTCAAGGAAGGAGATAAAGAGAGCAGAGT-GCATGCAA-TTAATTTCCTGTGGG---TCAGTGGTACCACTGTCATAGGTCACCAGTCCAAATTTAATAATTAAATA-TAACTGAGCCATTTATTACTTAATGTCTAAAAGATTCCAGTAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAAATAATACTCC---------------CAATTTGTGTGTGTG--------ATTTGTGTTTGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152658911 253 - 185818997 aaagaaaatg----gaaaacataag-----aagcaaggaagaaagaaagtcagtcaaggaaggaggtaaagagagCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCATCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTACTTAATGTGTAAAAGATGCCAATAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTTC---------------CAATTTGTGTGTGTG--------ATTTGTGTCTGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466682 253 - 192294377 aaagaaaatg----gaaaacataag-----aagcaaggaagaaagaaagtcagtcaaggaaggagataaagagagCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCATCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTACTTAATGTGTAAAAGATGCCAATAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTTC---------------CAATTTGTGTGTGTG--------ATTTGTGTCTGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911544 253 + 9440265 AAAGAAAATG----GAAAACATAAG-----AAGCAAGGAAGAAAAAAAGTCAGTCAAGGAAGGAGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCATCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTACTTAATGTGTAAAAGATGCCAATAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTTC---------------CAATTTGTGTGTGTG--------ATTTGTGTCTGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651262 253 + 21915920 aaagaaaatg----gaaaacataag-----aagcaaggaagaaagaaagtcagtcaaggaaggagataaagagagCAGAGACTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCATCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTACTTAATGTGTAAAAGATGCCAATAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTTC---------------CAATTTGTGCGTGTG--------ATTTGTGTCTGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12295902 253 - 90373283 AAGGAAAATG----GAAAACATAAG-----AAGCAAGGAAGAAAGAAAGTCAGTCAAGGAAGGAGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCGCTGTCATGGGTCATCAGTTCAAATTTAATAATTAAATA-TAACTGAACCATTTATGACTTAATGTGTAAAAGATGCCAATAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTTC---------------CAATTTGTGCGTGTG--------ATTTGTGTCTGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623586 253 + 1337817 aaagaaaatg----gaaaacataag-----aagcaaggaagaaagaaagtcagtcaaggaaggaggtaaagagagCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCATAGGTCATCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTACTTAATGTGTAAAAGATGCCAATAGG---AGCAT--ATATGGGTATCTGTTACTTGTGTAACTAATATTTC---------------CAATTTGTGCGTGTG--------ATTTGTGTCTGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602460 252 - 3237654 AAGGCAAATG----GAAAACATAAG-----AAGGAAGGAAGAAAGAAAGTCAGTCAAGGAAGGAGATAAAGAGAGCAGAGTCTCATGCAA-TTG----CCTGTGGG---TCAGTGGTACCACTGTCGTAGGTCATCAATCCAAATTTAATAATTAAATA-TAACTGAGCCGTTTATTACTTAATGTGTAAAAGATACCAGGAGG---AGCAT--ATATGGGTATCTGTTACTTGCGTAA-TAATATTTC---------------CAATTTGTGTGTGTG--------ATTTGTGTCTGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19133792 247 + 50472720 TATGAAAAGG----G--AACAAAAG-----AAG-AAGGAATAAAGAAAGT-AGTCAAGGAAGGAGAC-AAGAGAGCAGAGTCTCATGCAA-TTG----CCT-TGGG---TCCATGGTACCAATGTCATAGGTCACCAATCCAAATTTAATAATTAAATA-CAACTGAGCCATTTGTTACTGAATGTGTAAAAGATGCCAATAGG---AGAAT--ATATGGGTATCTCTTACTTGTGTAACTAACATTCC---------------CAATTTGTGTGTGTG--------ATTTGTATTCAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482530 250 + 13128814 TATGAAAATG----G--AACAAAAG-----CAG-AAGGAATAAAGAAAGTAAGTCAAGGAAGGAGATAAAGAGGGCAGAGTCTCATGGAA-TTG----CCTGTGAG---TCCATGGTACCAATGTCATAGGTCACCAATCCaaatttaataattaaata-taaCTGAGCCATTTGTTATTGAATGTGTCAAAGATCCCAATAGG---AGAAT--ATATGGGTATCTCTTACTTGTGTAATTAACATTCC---------------CAATTTGTGTGTGTG--------TTTTGTGTTTGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020055 249 - 14377064 TATGAAATTG----G--AGCAAAAG-----AAG-AAGGAATAAAGAAAGTAAGTCAAGGAAGGAGAT-AAGAGAGCAGAGTCTCATGCAG-TTG----CCTGTGGG---TCCATGGTACCAATGTCATAGGTCACCAATCCAAATTTAATAATTAAATA-TAACTGAGCCATTTGTTACTGAATGTGTAAAAGATGCCAATAGG---AGAAT--ATATGGGTATCTATTACTTGTGTAACTAACATTCC---------------CAATTTGTGTGCGTG--------ATTTGTGTTTGT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6067810 249 + 9889416 TATGAAAATG----G--AACAAAAG-----AAG-AAGGAATAAAGAAAGTAAGTCAAGGAAGGGGAT-AAGAGAGCAGAGTCTCATGCAG-TTG----CCTGTGGG---TCCATGGTACCAATGTCATAGGTCACCAATCCAAATGTAATAATTAAATA-TAACTGAGCCATTTGTTACTGAATGTGTAAAAGATGCCAATAGG---AGAAT--ATATGGGTGTCTCTTACTTGTGTAACTAACATTCC---------------CAATTTGTGTGTGTG--------ATTTGTGTTTGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16837702 257 + 47401472 AATAAAAATG----GGACACAGAAGTT---AAG-AAGGAAGGAATAAAGAAAGTCAAGGAAGGAGATAGAGGGAGCAGAGTGTCATGCAAATTG----CTGGTGGGCA-TCAGTGGTGCCATTGTCATAGGTCACCAATCCAAATTTAATAAATAAATT-TGTTTCAACCATTTAGTACTGATCGTGTGAAAGATGCCAGTAGG---GACAT--ATATGGGTATCTGTCATTTATGTAATTAACATTTC---------------CAATTTGTGTATGTG--------GTATGTGTTTGT i micMur3.chr31 C 0 I 77 s proCoq1.NW_012147997v1 1199282 257 - 2312742 AATAAAAATG----GGACACAGAAGTT---AAG-AAGGAAGGAATAAAGAAAGTCAAGGAAGAAGATAGAGGGAGCAGAGTGTCATGCAAGTTG----CTGATGGGCA-TCAGTGGTACCATTGTCATAAGTCACCAATCCAAATTTAATAAATAAATT-TGTTTGAGCCATTTAGTACTGATCATGTGAAAGATGCCAGTAGA---GACAT--ATATAGATATCTGTTATTTATGTAACTTACATTTC---------------CAATGTGTGTATGTG--------ATTTTTGTTTGT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18320256 254 - 38779656 AATAAAAATG----GGACACAGAAGTT---AAG-AAGGAAGGAGTAAA-AATGTTCAGGGAGGAGATGGAGAGAGCATAATGTCATGCAAGTTG----CTGCCCGTCA-TCAGCAG-ACCATTGTCACAGGGCACCAATCCAAATTTAATAAATAAGTT-GGTTTGACCTATCTAGTACTAACCATGTGAAA-ATGCCTATGGG---GGAAT--ATGTGGGTGTCTGTTACTTATGTAACAATTATTTC---------------CAACTTATGTATGTG--------ATTTGTGTTTAT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75811614 257 + 98207768 AATGGCAATGTTGAGAATACATGGA-----ATGATTTTGAGATATAAAACTAATAAGGGAAGGA-ATACAGAGAGTGAA-------GCAA-ATG----GCTGTGGGCA-TCAGAGATGCTGTTGCTACTTGGTGCCAATGCAATTTTAATAACCAAAT--TGAAAGAGGAACTTAGTATTGGTCAAGTAAAAGATAAAAGTAGG---GCATT--ATGTGGATGCCTTTTGTTAAAAAAGCTAATATTCA---------------CAgtatgtatgtatgtatgtgt-atgtatgtgtgt i mm10.chr16 I 184 I 1043 s canFam3.chr31 11435018 261 + 39895921 AATGAACATG----GT-CATAGAAGTC---AAG-AAGGAAAGAATAAAGTGAGTCAAGGGAGGATCTAGAGAGAGTAGTGTCACATA-AA-TTG----TCTCTGGGCATTCAGTGGAACTGTTGTCATAGGTCATCAATCCAAATTTAATTTTTTGATTCTATCTGAGCCATTTAGTACTGATAATATAAAATATGCCAATGAG---GGCAT--ATATAAGTA--TGTTACTTGTATA-CTAATATTCC---------------CAGTTTGTGTGTGTGTGTATGTGATTTCTGTTTAT i canFam3.chr31 C 0 I 3 s dasNov3.JH568778 630035 279 - 6883506 ACTAAACAAG----GAACACAGAAGGTAAGAAGGAAGGAATAAAGAAAATAAGTCAAAGGAAGAGGTGGAGAAAGTAGAGAGCCACTTAAATTG----TCCCTGGGCACTCAGTGGCTCCACCATAGTAGGTCAGCAAATCAAATTTAATTCTGAAATT-TATCTGAGCCCATTAGTACTAAATATGTAAATGATGCCAATGGGCATAGGATGCACACAGATATCTGTTACATGTGTAACT---GTTTCCTGTCTGAAGGAAGACAACCTAGATGTGTG--------TTTTGTGTTTGT i dasNov3.JH568778 C 0 C 0 a score=9586.000000 s hg38.chr21_GL383578v2_alt 31515 1 + 63917 T s panTro5.chr21 869026 1 + 33445071 T i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553675 1 + 46275980 T i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465770 1 - 13858734 T i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587238 1 + 32716333 T i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152659164 1 - 185818997 T i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466935 1 - 192294377 T i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911797 1 + 9440265 T i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651515 1 + 21915920 T i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12296155 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623839 1 + 1337817 T i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602712 1 - 3237654 T i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19134039 1 + 50472720 T i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482780 1 + 13128814 T i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020304 1 - 14377064 T i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6068059 1 + 9889416 T i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1199539 1 - 2312742 A i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18320510 1 - 38779656 A i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435282 1 + 39895921 T i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 630314 1 - 6883506 T i dasNov3.JH568778 C 0 I 823 e mm10.chr16 75811871 1043 + 98207768 I e micMur3.chr31 16837959 77 + 47401472 I a score=242528.000000 s hg38.chr21_GL383578v2_alt 31516 17 + 63917 ATAGTAAGAAAATTAAC-------- s panTro5.chr21 869027 17 + 33445071 ACAGTAAGAAAATTAAG-------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553676 17 + 46275980 ATAGTAAGAAAATTAAC-------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465771 17 - 13858734 ATAGTAAGAAAATTAAC-------- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587239 25 + 32716333 ATAGTAAGAAAATTAACCACTGATA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152659165 25 - 185818997 ATAGTAAGAAAATTAACCACTGATA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466936 25 - 192294377 ATAGTAAGAAAATTAACCACTGATA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911798 25 + 9440265 ATAGTAAGAAAATTAACCACTGATA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651516 25 + 21915920 ATAGTAAGAAAATTAACCACTGATA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12296156 25 - 90373283 ATAGTAAGAAAATTAACCACTGATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623840 25 + 1337817 ATAGTAAGAAAATTAACCACTGATA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602713 25 - 3237654 ATAGTAAAAAAATTAACCACTGATA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19134040 25 + 50472720 ATAATAACAAAACTAACCACTGCTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482781 25 + 13128814 ATAATAACAAAACTAACCACTGATA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020305 25 - 14377064 ATAATAACAAAACTAACCACTGATA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6068060 25 + 9889416 ATAATAACAAAACTAAACACTGATA i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1199540 25 - 2312742 ATAATAACAGAATTAACCACTGCTA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18320511 25 - 38779656 ATAATAACAGAATTAACCATTGCTG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435283 25 + 39895921 ATAATAAGAAAATTAATCACTGCTA i canFam3.chr31 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e micMur3.chr31 16837959 77 + 47401472 I e dasNov3.JH568778 630315 823 - 6883506 I a score=533204.000000 s hg38.chr21_GL383578v2_alt 31533 46 + 63917 CAACAAAATCTT------TAAGCCCTGGACCTCCGAAATCACATGTATTCCT s panTro5.chr21 869044 46 + 33445071 CAACAAAATCTT------TAAGCCCTGGACCTCCGAAATCACATGTATTCCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553693 46 + 46275980 CAACAAAATCTT------TAAGCCCTGGACCTCCGAAATCACATGTATTCCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465788 46 - 13858734 CAATAAAATCTT------TAAGCCCTGGACCTCCGAAATCACATGTATTCCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587264 51 + 32716333 CAACAAAATCTT-TACTCTAAGCCCTGGACCTCAGAAATCACATGTATTCCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152659190 46 - 185818997 CAACAAAATCTT------TAAGCCCTGGGCCTCGGAAATCACACGTATTCCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159466961 46 - 192294377 CAACAAAATCTT------TAAGCCCTGGGCCTCGGAAATCACACGTATTCCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911823 46 + 9440265 CAACAAAATCTT------TAAGCCCTGGGCCTCGGAAATCACACGTATTCCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651541 46 + 21915920 CAACAAAATCTT------TAAGCCCTGGGCCTCGGAAATCACACGTATTCCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12296181 46 - 90373283 CAACAAAATCTT------TAAGCCCTGGGCCTCGGAAATCACACGCATTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623865 46 + 1337817 CAACAAAATCTT------TAAGCCCTGGGCCTCGGAAATCACACGTATTCCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602738 46 - 3237654 CTACAAAATCTT------TAAGCCCTGGGCCTTGGAAGTCACATGCATTCCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19134065 46 + 50472720 CAACAAAATCTT------TAAGCCCTGGACCCCAGAAAGCACATGTATCCCT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482806 46 + 13128814 CAACAAAATCTT------TAAGCCCTGGACCCCAGAAAACACATGTATCCCT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020330 46 - 14377064 CAACAAAATCTT------TAAGCCCTGGACCCCAGAAAGCACATGTATCCCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6068085 31 + 9889416 CAACAAAAT---------------------CCCAGAAATCACATATATCCCT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1199565 51 - 2312742 CAATAAAACCTT-CACTCTAAGCCAAGGACCTCAGAAACTACATCTATTTCT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18320536 51 - 38779656 CAACAGAACCTT-TGCTCTTAGCCCTACACCTCAGAAACCACATCTACTACT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435308 48 + 39895921 C----AAATCTTTTACTGTAAATTTCGGACCTCAAAAATCACATCTCTTTCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 631138 52 - 6883506 CAACAAAACCATCCATTCTAAGTTCAGGATCTCAGCAACCACATCTCTTCCT i dasNov3.JH568778 I 823 C 0 e mm10.chr16 75811871 1043 + 98207768 I e micMur3.chr31 16837959 77 + 47401472 I a score=939243.000000 s hg38.chr21_GL383578v2_alt 31579 64 + 63917 TTCTCAGGAAGAGGCAGAAGAGCCTCACACACTCACCTCACTGCCACTGTGAGAGCTGCTTCCT s panTro5.chr21 869090 64 + 33445071 TTCTCAGGAAGAGGCAGAAGAGCCTCACACACTCACCTCACTGCCACTGTGAGAGCTGCTTCCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553739 64 + 46275980 TTCTCAGGAAGAGGCAGAAGAGCCTCACACACTCACCTCACTGCCACTGTGAGAGCTGCTTCCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465834 64 - 13858734 TTCTCAGGAAGAGGCAGAAGAGCCTCACACACTCACCTCACTGCCACTGTGAGAGCTGCTTCCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587315 64 + 32716333 TTCTCAGGAAGAAGCAGAAGAGCCTCACACACTCACCTCACTGGCACTATGAGAGCTGCTTCCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152659236 64 - 185818997 TTCTCAGGAAGAGACAGAAGAGCCTCACACACTCACCTCCCTGCCACTGTGAGAGCTGCTTCCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159467007 64 - 192294377 TTCTCAGGAAGAGACAGAAGAGCCTCACACACTCACCTCCCTGCCACTGTGAGAGCTGCTTCCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911869 64 + 9440265 TTCTCAGGAAGAGACAGAAGAGCCTCACACACTCACCTCCCTGCCACTATGAGAGCTGCCTCCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651587 64 + 21915920 TTCTCAGGAAGAGGCAGAAGAGCCTCACACACTCACCTCCCTGCCACTGTGAGAGCTGCTTCCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12296227 64 - 90373283 TTCTCAGGAAGAGGCAGAAGAGCCTCACACACTCACCTCCCTGCCACTGTGAGAGCTGCTTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623911 64 + 1337817 TTCTCAGGAAGAGACAGAAGAGCCTCACACACTCACCTCCCTGCCACTGTGAGAGCTGCTTCCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602784 64 - 3237654 TTCTTAGGAAGAGGCAGAAGAGCCTCACACACTCCCCTCCCTGCCACTGTGAGAGCTGCTTCCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19134111 64 + 50472720 TTCTCAGGAAGAGGCAGAAGAGCCTCACAGACTCACCTCACTGCCACAACGAGAGCTGCTTCCT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482852 63 + 13128814 TTCTCAGG-AGAGACTCAAGAGCCTCACACACTCACCTCACTGCCACAAAGAGAGCTGCTTCCT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020376 64 - 14377064 TTCTCAGGAAGAGACACAAGAGCCTCACACACTCACCTCACTGCCACAACAAGAGCTGCTTCCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6068116 64 + 9889416 TTCTCAGGAAGAGACAGAAGAGCCTCACACACTCACCTCTTTGCCACAACGAGAGCTGCTTCCT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16838036 64 + 47401472 TTCTCAGGAAGAGGCCCAAGGGCCTCACACAGTTACCTCACTGCTACCATGAGACCTGCTCCCT i micMur3.chr31 I 77 C 0 s proCoq1.NW_012147997v1 1199616 63 - 2312742 TTCTCAGGAAGAAG-CAAAGGGCCTCACACACTTACCTCACTGTTACCATGAGAGCTGCTCCCT i proCoq1.NW_012147997v1 C 0 I 674 s otoGar3.GL873528 18320587 64 - 38779656 TTCTTACGAAGAAGCATAAGGGCCTCACACCCTCACCTCACTGCTACCACGAGAGCTGCTCCCT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435356 50 + 39895921 TTTTCAGA------------AGCCTAATG--ATTATCTTGCTGCCACCATGAGAGCTGTTCCTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 631190 63 - 6883506 TTCTTTGGAAGAGGC-TAGGGATCTTATGCATTCACCTTGCTGCCTTCATAAGAGCCACTCCCT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I a score=159503.000000 s hg38.chr21_GL383578v2_alt 31643 11 + 63917 GTCCTGGGACt s panTro5.chr21 869154 11 + 33445071 GTCCTGGGACt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553803 11 + 46275980 GTCCTGGGACt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465898 11 - 13858734 ATCCTGGGACt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587379 11 + 32716333 GTCCTGGGACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152659300 11 - 185818997 GTCCTGGGACT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159467071 11 - 192294377 GTCCTGGGACT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5911933 11 + 9440265 GTCCTGGGACT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5651651 11 + 21915920 GTCCTGGGACT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12296291 11 - 90373283 GTCCTGGGACT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 623975 11 + 1337817 GTCCTGGGACT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 602848 11 - 3237654 ATCCTGGGACT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19134175 11 + 50472720 GCCCTTGGACT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2482915 11 + 13128814 GCCCTGGGACT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7020440 11 - 14377064 GTCCTGGGACT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6068180 11 + 9889416 GCCCTGGGACT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16838100 11 + 47401472 TCCCTGGGACT i micMur3.chr31 C 0 I 1005 s otoGar3.GL873528 18320651 11 - 38779656 CCCCTGGGACT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435406 11 + 39895921 ACCCTGGAACC i canFam3.chr31 C 0 I 2 s dasNov3.JH568778 631253 11 - 6883506 GCCCTAAGAAT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I a score=188072.000000 s hg38.chr21_GL383578v2_alt 31654 16 + 63917 agcctgggtgttgttc s panTro5.chr21 869165 16 + 33445071 agcctgggtgttgttc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553814 16 + 46275980 agcctgggtgttgttc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465909 16 - 13858734 agcctgggtgttgttc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587390 16 + 32716333 AGCCTGGGTATTGTTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152659311 16 - 185818997 AGCCTGGGTGCTGTTC i rheMac8.chr3 C 0 I 846 s macFas5.chr3 159467082 16 - 192294377 AGCCTGGGTGCTGTTC i macFas5.chr3 C 0 I 846 s macNem1.NW_012019910v1 5911944 16 + 9440265 AGCCTGGGTGCTGTTC i macNem1.NW_012019910v1 C 0 I 846 s cerAty1.NW_012002954v1 5651662 16 + 21915920 AGCCTGGGTGCTGTTC i cerAty1.NW_012002954v1 C 0 I 846 s chlSab2.chr2 12296302 16 - 90373283 AGCCTGGGTGCTGTTC i chlSab2.chr2 C 0 I 860 s manLeu1.NW_012107264v1 623986 16 + 1337817 AGCCTGGGTGCTGTTC i manLeu1.NW_012107264v1 C 0 I 845 s colAng1.NW_012116933v1 602859 16 - 3237654 AGCCTGAGTGTTGTTC i colAng1.NW_012116933v1 C 0 I 864 s calJac3.chr21 19134186 16 + 50472720 AGCCTGGATGCTGTTT i calJac3.chr21 C 0 I 862 s saiBol1.JH378168 2482926 16 + 13128814 AGCCTGGATGCTGTTT i saiBol1.JH378168 C 0 I 856 s cebCap1.NW_016107322v1 7020451 16 - 14377064 AGCCTGGATGCTGTTT i cebCap1.NW_016107322v1 C 0 I 856 s aotNan1.NW_018487195v1 6068191 16 + 9889416 AGCCTGGATGCTGTTT i aotNan1.NW_018487195v1 C 0 I 864 s otoGar3.GL873528 18320662 15 - 38779656 -GCCCAAGTGCTGTTC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435419 16 + 39895921 GACACAGGCATTAGTC i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 631264 16 - 6883506 GGCTTGGACTCTGCTC i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I a score=7840.000000 s hg38.chr21_GL383578v2_alt 31670 1 + 63917 c s panTro5.chr21 869181 1 + 33445071 t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553830 1 + 46275980 t i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465925 1 - 13858734 c i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1587406 1 + 32716333 C i nomLeu3.chr25 C 0 I 730 s rheMac8.chr3 152660173 1 - 185818997 c i rheMac8.chr3 I 846 C 0 s macFas5.chr3 159467944 1 - 192294377 c i macFas5.chr3 I 846 C 0 s macNem1.NW_012019910v1 5912806 1 + 9440265 c i macNem1.NW_012019910v1 I 846 C 0 s cerAty1.NW_012002954v1 5652524 1 + 21915920 c i cerAty1.NW_012002954v1 I 846 C 0 s chlSab2.chr2 12297178 1 - 90373283 c i chlSab2.chr2 I 860 C 0 s manLeu1.NW_012107264v1 624847 1 + 1337817 c i manLeu1.NW_012107264v1 I 845 C 0 s colAng1.NW_012116933v1 603739 1 - 3237654 c i colAng1.NW_012116933v1 I 864 C 0 s calJac3.chr21 19135064 1 + 50472720 c i calJac3.chr21 I 862 C 0 s saiBol1.JH378168 2483798 1 + 13128814 c i saiBol1.JH378168 I 856 C 0 s cebCap1.NW_016107322v1 7021323 1 - 14377064 c i cebCap1.NW_016107322v1 I 856 C 0 s aotNan1.NW_018487195v1 6069071 1 + 9889416 c i aotNan1.NW_018487195v1 I 864 C 0 s otoGar3.GL873528 18320677 1 - 38779656 T i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435435 1 + 39895921 T i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 631280 1 - 6883506 T i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I a score=29223.000000 s hg38.chr21_GL383578v2_alt 31671 2 + 63917 tc s panTro5.chr21 869182 2 + 33445071 tc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553831 2 + 46275980 tc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465926 2 - 13858734 tc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588137 2 + 32716333 tc i nomLeu3.chr25 I 730 C 0 s rheMac8.chr3 152660174 2 - 185818997 tc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159467945 2 - 192294377 tc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912807 2 + 9440265 tc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652525 2 + 21915920 tc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297179 2 - 90373283 tc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624848 2 + 1337817 tc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603740 2 - 3237654 tc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135065 2 + 50472720 tc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483799 2 + 13128814 tc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021324 2 - 14377064 tc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069072 2 + 9889416 tc i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11435436 2 + 39895921 TC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 631281 2 - 6883506 TC i dasNov3.JH568778 C 0 I 642 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I e otoGar3.GL873528 18320678 0 - 38779656 C a score=91682.000000 s hg38.chr21_GL383578v2_alt 31673 11 + 63917 ctgaattcaac s panTro5.chr21 869184 11 + 33445071 ctgaactcaac i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553833 11 + 46275980 ctgaactcaac i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465928 11 - 13858734 ctgaactcaac i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588139 11 + 32716333 ttgggttcaag i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660176 11 - 185818997 ttgaattcaat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159467947 11 - 192294377 ttgaattcaat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912809 11 + 9440265 ttgaattcaat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652527 11 + 21915920 ttgaattcaat i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297181 11 - 90373283 ttgaattcaat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624850 11 + 1337817 ttgaattcaat i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603742 11 - 3237654 ttgaattcaat i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135067 11 + 50472720 ctgaactcaag i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483801 11 + 13128814 ctgaactcaag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021326 11 - 14377064 ctgaactcaag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069074 11 + 9889416 ctgaactcaag i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18320678 10 - 38779656 -GCAATTCAGC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11435438 11 + 39895921 TGTAACTGAGC i canFam3.chr31 C 0 I 644 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I e dasNov3.JH568778 631283 642 - 6883506 I a score=96290.000000 s hg38.chr21_GL383578v2_alt 31684 11 + 63917 caatcctccca s panTro5.chr21 869195 11 + 33445071 caatcctccca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553844 11 + 46275980 caatcctccca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465939 11 - 13858734 caatcctccca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588150 10 + 32716333 tgatcct-ctg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660187 11 - 185818997 caatcctccca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159467958 11 - 192294377 caatcctccca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912820 11 + 9440265 caatcctccca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652538 11 + 21915920 caatcctccca i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297192 11 - 90373283 caatcctccca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624861 11 + 1337817 caatcctccca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603753 11 - 3237654 caatcctccca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135078 11 + 50472720 cagtcctcttg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483812 11 + 13128814 taatcctcttg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021337 11 - 14377064 caatcctcttg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069085 11 + 9889416 caatcctcttg i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18320688 8 - 38779656 ---TCCTGCCA i otoGar3.GL873528 C 0 I 642 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I e dasNov3.JH568778 631283 642 - 6883506 I e canFam3.chr31 11435449 644 + 39895921 I a score=400474.000000 s hg38.chr21_GL383578v2_alt 31695 44 + 63917 cctcagcctcccatagtgttgggattacaggcgtgagccactgc s panTro5.chr21 869206 44 + 33445071 cctcagcctcccaaagtgttggcattacaggcatgagccactgt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553855 44 + 46275980 cctcagcctcccaaagtgttggcattacaggcatgagccactgt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465950 44 - 13858734 cctcagcctcctaaagcgttgggattacaggcgtgagccactgc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588160 44 + 32716333 ccccagccacccaagtagctgggactacaggcacacaccaccac i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660198 44 - 185818997 cttcagcctcccaaagtgttgggattacaggcgtgagccaccgc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159467969 44 - 192294377 cttcagcctcccaaagtgttgggattacaggcgtgagccaccgc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912831 44 + 9440265 cttcagcctcccaaagtgttgggattacaggcgtgagccaccgc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652549 44 + 21915920 cttcagcctcccaaagtgttgggattacaggcgtgagccaccgc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297203 44 - 90373283 cctcagcctcccaaagtgttgggattataggcgtgagccaccac i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624872 44 + 1337817 cttcagcctcccaaagtgttgggattacaggcgtgagccaccgc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603764 44 - 3237654 cctcggcctcccaaagtgttgggattacaggcattagccaccgc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135089 44 + 50472720 cctcggcctcccaaagtgctgggattacaggtgtgaaccaccac i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483823 44 + 13128814 cctcggcctcccaaagtgctgggattacaggtatgaaccaccgc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021348 44 - 14377064 cctcggcctcccaaagtgctgggattacaggtatgaaccaccgc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069096 43 + 9889416 cctcggcctcccaaagtgct-ggattataggtgtgagctactgc i aotNan1.NW_018487195v1 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I e otoGar3.GL873528 18320696 642 - 38779656 I e dasNov3.JH568778 631283 642 - 6883506 I e canFam3.chr31 11435449 644 + 39895921 I a score=60627.000000 s hg38.chr21_GL383578v2_alt 31739 6 + 63917 acctag s panTro5.chr21 869250 6 + 33445071 acctag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553899 6 + 46275980 acctag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 465994 6 - 13858734 acctag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588204 6 + 32716333 acctgg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660242 6 - 185818997 acccag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468013 6 - 192294377 acccag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912875 6 + 9440265 acccag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652593 6 + 21915920 acccag i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297247 6 - 90373283 acccag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624916 6 + 1337817 acgcag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603808 6 - 3237654 acccag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135133 6 + 50472720 acccag i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483867 6 + 13128814 acccag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021392 6 - 14377064 acccag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069139 6 + 9889416 acccag i aotNan1.NW_018487195v1 C 0 C 0 s dasNov3.JH568778 631925 6 - 6883506 atctaa i dasNov3.JH568778 I 642 C 0 e mm10.chr16 75811871 1043 + 98207768 I e proCoq1.NW_012147997v1 1199679 674 - 2312742 I e micMur3.chr31 16838111 1005 + 47401472 I e otoGar3.GL873528 18320696 642 - 38779656 I e canFam3.chr31 11435449 644 + 39895921 I a score=82595.000000 s hg38.chr21_GL383578v2_alt 31745 6 + 63917 ccAACA-- s panTro5.chr21 869256 6 + 33445071 ccAACA-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553905 6 + 46275980 ccAACA-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466000 6 - 13858734 ccAACA-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588210 6 + 32716333 ctaact-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660248 6 - 185818997 ccAACA-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468019 6 - 192294377 ccAACA-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912881 6 + 9440265 ccAACA-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652599 6 + 21915920 ccAACA-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297253 6 - 90373283 ccAACA-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624922 6 + 1337817 ccAACA-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603814 6 - 3237654 ccAACA-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135139 6 + 50472720 cTAACA-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483873 6 + 13128814 ccAACA-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021398 6 - 14377064 ccAACA-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069145 6 + 9889416 ccAACA-- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839116 6 + 47401472 CCAACA-- i micMur3.chr31 I 1005 C 0 s proCoq1.NW_012147997v1 1200353 6 - 2312742 CCAACA-- i proCoq1.NW_012147997v1 I 674 C 0 s otoGar3.GL873528 18321338 6 - 38779656 CCAACA-- i otoGar3.GL873528 I 642 C 0 s dasNov3.JH568778 631931 6 - 6883506 --tacata i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e canFam3.chr31 11435449 644 + 39895921 I a score=99335.000000 s hg38.chr21_GL383578v2_alt 31751 12 + 63917 CATATTTTTGAA- s panTro5.chr21 869262 12 + 33445071 CATATTTTTGAA- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553911 12 + 46275980 CATATTTTTGAA- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466006 12 - 13858734 CATATTTTTGAA- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588216 12 + 32716333 tttgtatttgta- i nomLeu3.chr25 C 0 I 9 s rheMac8.chr3 152660254 11 - 185818997 CATATTTTGAA-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468025 11 - 192294377 CATATTTTGAA-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912887 11 + 9440265 CATATTTTGAA-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652605 11 + 21915920 CATATTTTGAA-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297259 11 - 90373283 CATATTTTGAA-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624928 11 + 1337817 CATATTTTGAA-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603820 11 - 3237654 CATATTTTGAA-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135145 11 + 50472720 CATATTTTTGA-- i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2483879 11 + 13128814 CATATTTTTGA-- i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7021404 11 - 14377064 CATATTTTTGA-- i cebCap1.NW_016107322v1 C 0 I 1 s aotNan1.NW_018487195v1 6069151 11 + 9889416 CATATTTTTGA-- i aotNan1.NW_018487195v1 C 0 I 1 s micMur3.chr31 16839122 11 + 47401472 CTTATTTTTGA-- i micMur3.chr31 C 0 I 2 s proCoq1.NW_012147997v1 1200359 11 - 2312742 CTTATTTTTGA-- i proCoq1.NW_012147997v1 C 0 I 2 s otoGar3.GL873528 18321344 11 - 38779656 CTTATTTTTGA-- i otoGar3.GL873528 C 0 I 2 s canFam3.chr31 11436093 11 + 39895921 CAGATTTTTGA-- i canFam3.chr31 I 644 I 2 s dasNov3.JH568778 631937 12 - 6883506 tatttttttaa-a i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I a score=234471.000000 s hg38.chr21_GL383578v2_alt 31763 17 + 63917 ACATGGTCTGTGACAGT s panTro5.chr21 869274 17 + 33445071 ACATGGTCTGTGACAGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553923 17 + 46275980 ACATGGTCTGTGACAGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466018 17 - 13858734 ACATGGTCTGTGACAGT i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152660265 17 - 185818997 ACATGGTCTGTGACAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468036 17 - 192294377 ACATGGTCTGTGACAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912898 17 + 9440265 ACATGGTCTGTGACAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652616 17 + 21915920 ACATGGTCTGTGACAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297270 17 - 90373283 ACATAGTCTGTGACAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624939 17 + 1337817 ACATGGTCTGTGACAGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603831 17 - 3237654 ACATGGTCTGTGACAGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135157 17 + 50472720 ACATGCTCTGTGACAGG i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2483891 17 + 13128814 ACATGCTCTGTGACAGG i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7021416 17 - 14377064 ACATGCTCTGTGACAGG i cebCap1.NW_016107322v1 I 1 C 0 s aotNan1.NW_018487195v1 6069163 17 + 9889416 ACGTGCTCTGTGACAAG i aotNan1.NW_018487195v1 I 1 C 0 s micMur3.chr31 16839135 17 + 47401472 GCATGCTCTGTGATAGG i micMur3.chr31 I 2 C 0 s proCoq1.NW_012147997v1 1200372 17 - 2312742 GCATGCTCTGTGACAGG i proCoq1.NW_012147997v1 I 2 C 0 s otoGar3.GL873528 18321357 17 - 38779656 GCATGTTCTGTAACAGG i otoGar3.GL873528 I 2 C 0 s canFam3.chr31 11436106 17 + 39895921 GCACACTCTGTGACTGG i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 631949 17 - 6883506 gcacactctgtgccagg i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75811871 1043 + 98207768 I e nomLeu3.chr25 1588228 9 + 32716333 I a score=366809.000000 s hg38.chr21_GL383578v2_alt 31780 25 + 63917 CACAAAGTATGTAGAAATGAATAGG s panTro5.chr21 869291 25 + 33445071 CACAAAGTATGTAGAAATGAATAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553940 25 + 46275980 CACAAAGTATGTAGAAATGAATAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466035 25 - 13858734 CACGAAGTATGTAGAAATGAATAGG i gorGor5.CYUI01015003v1 C 0 C 0 s rheMac8.chr3 152660282 25 - 185818997 CATAAAGTATGTAGAAATGAATAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468053 25 - 192294377 CATAAAGTATGTAGAAATGAATAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912915 25 + 9440265 CATAAAGTATGTAGAAATGAATAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652633 25 + 21915920 CATAAAGTATGTAGAAATGAATAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297287 25 - 90373283 CACAAAGTAGGTAGAAATGAATAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624956 25 + 1337817 CATAAAGTATGTAGAAATGAATAGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603848 25 - 3237654 CATAAAGTATGTAGAAATGAATAGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135174 25 + 50472720 CACAAAGTATATAGAAATGAATAGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483908 25 + 13128814 CACAAAGTATACAGAAATGAATAGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021433 25 - 14377064 CACAAAGTATATAGAAATGAATAGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069180 25 + 9889416 CCCAAAGCATATAGAAATAAATAGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839152 25 + 47401472 CACAAAGCAGATAGAAATGAATACA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1200389 25 - 2312742 CACAAGGCAGGTAGAAATGAATATG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18321374 25 - 38779656 CACAAAGCAGGTAGAAATGAATACG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75812914 25 + 98207768 CGCAAAGCGGATAGAAACAAGTTCC i mm10.chr16 I 1043 C 0 s canFam3.chr31 11436123 25 + 39895921 CACAAAGCACACAGAAATGAAAAAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 631966 25 - 6883506 tacaaaccatatagaaatgaataag i dasNov3.JH568778 C 0 C 0 e nomLeu3.chr25 1588228 9 + 32716333 I a score=2384993.000000 s hg38.chr21_GL383578v2_alt 31805 171 + 63917 --------------TATTTGTTTGAGGG---AAGGCAGATGCTTATAATATATTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGAAATCTTGCTTGGGAGGCCATCATCGCCCTAATAGGAGGATTACTCATTTATCCACATTTGGCCTCTCAA-----CCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG s panTro5.chr21 869316 171 + 33445071 --------------TATTTGTTAGAGGG---AAGGCAGATGCTTATAATATATTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGAAATCTTGCTTGGGAGGCCATCATCGCCCTAATAGGAGGATTACTCATTTATCCACATTTGGCCTCTCAA-----CCCCTTTCATATTTTAGAAGGTGGCGTGAGAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14553965 171 + 46275980 --------------TATTTGTTAGAGGG---AAGGCAGATGCTTATAATATATTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGAAATCTTGCTTGGGAGGCCATCATCGCCCTAATAGGAGGATTACTCATTTATCCACATTTGGCCTCTCAA-----CCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466060 171 - 13858734 --------------TATTTGTTTGAGGG---AAGGCAGATGCTTATAATATATTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGAAATCTTGCTTGGGAGGCCATCATCACCCTAATAGGAGGATTACTCATTTATCCACATTTGGCCTCTCAA-----CCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588237 171 + 32716333 --------------TATTTTTTTGTAGGGACAAAATAAATATCC---CTTTATTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGTTTGGGAGGCCATCATCTCCCTAATAGGAGGATTACTCATTTATCCACATTTGGCCTCTCAA-----CCCCTTTCCTATTTCAGAAGGTGGCATGAGAG i nomLeu3.chr25 I 9 C 0 s rheMac8.chr3 152660307 171 - 185818997 --------------TATTTGTTTTAGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGCTTGGGAGGCCTTCATCACCGTAACGGGAGGATTACTCATTTATCCACATTTGGTCTCTCAA-----TCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468078 170 - 192294377 --------------TATTTGTTTTAGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGCTTGGGAGGCCTTCATCACCGTAACGGGAGGATTACTCATTTA-CCACATTTGGTCTCTCAA-----TCCCTTTCCTATTTTAGAAGGTGGTGTGAGAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5912940 171 + 9440265 --------------TATTTGTTTTAGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGCTTGGGAGGCCTTCATCACCGTAACGGGAGGATTACTCATTTATCCACATTTGGTCTCTCAA-----TCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652658 171 + 21915920 --------------TATTTGTTTTAGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGCTTGGGAGGCCTTCATCACCGTAATGGGAGGATTACTCATTTATCCACATTTGGTCTCTCAA-----TCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297312 171 - 90373283 --------------TATTTGTTTTGGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGCTTTGGAGGCCTTCATCACCGTAATGGGAGGATTACTCATTTATCCACATTTGATCTCTCAA-----TCCCTTTTCTATTTTAGAAGGTGACGTGAGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 624981 171 + 1337817 --------------TATTTGTTTTAGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTAGT----TGTATAAA-TAAGCAATCTTGCTTGGGAGGCCTTCATCACCGTAATGGGAGGATTACTCATTTATCCACATTTGGTCTCTCAA-----TCCCTTTCCTATTTTAGAAGGTGGCGTGAGAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 603873 171 - 3237654 --------------CATTTGTTTTAGGG---AAGGCAGATGCTTACAATATGTTTTGATAAAGGGACATTTTGT----TGTATAAA-TGAGCAATCTTGCTTGGGAGACCTTCATCACCGTAATGGGAGGATTACTCATTTGTCCACAATTGGTCTCTCAA-----TCCCCTTCCTATTTTAGAAGGTGGCGTGACAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135199 175 + 50472720 --------------TATTTGGTTTAGGG---AAAGCAGATACTTATAATATATTTTGATAAAGGGACATTTAGTTTTATTTATAAA-TGAGCAATCTTGCTTGAGAGTCCATCATCACCCTAATGGGAGGATTACTCATTTACCTATATTTGACCTCTCAA-----CCCCTTTTCTATTTTAGAAGGTGGCATGAGAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2483933 175 + 13128814 --------------TATTTGGTTTAGGG---AAGGCAGATGCTTACAATATATTTTGATAAAGGGACATTTAGTTTTATTTATAAA-TGTGCAATCTTGCTTGAGAGGCCATCATCACCCTAATGGGAAGATTACTCATTTGCCCATATTTGACCTTTCAA-----CCCCTTTACTAATTTAGAAGGTGGCATGAGAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021458 175 - 14377064 --------------TATTTGGTTTAGGG---AAGGCAGATGCTTACAATATATTTTGATAAAGGGACATTTAGTTTTATTTATAAA-TGAGCAATCTTGCGTGAGAGGCCATCATCACCCTAATGGGAGGATTACTCATTTACCCATATTTGACCTTTCAA-----CCCCTTTCCTATTTTAGAAGGTGGCATGAGAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069205 173 + 9889416 --------------TATTTGGTTTAGGG---AAGGCAGATGCTTACAATATATTTTGATAAAGGGACATTTAGTTTTATTTATAAA-TGAGCAATCTTGCTTGAGAGGCTATCATCACCCTAATGGGAGGATTACTC--TTACCCATATTTGACCCCTCAA-----CCCCTTTCCTATTTTAGAAGGTGGCATGAGAG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839177 175 + 47401472 --------------GGTTTGCTTCAGAG---GTGGTAGATGCCTACAGTATATTATGATAAAGGGACATTGAATTGTATTTACAAA-TAAGCCATCTTCCTGGAGAGGCCATCATCACCCCAAGAGGAGGATCATTCATCCATCTGCATTTGACCTCTCAG-----CCCCTTTCCTATTTTAGAACGTGGCATAAGAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1200414 175 - 2312742 --------------GGTTTGCTTCAGAG---GAGGTAGATGCGTACAATATATTATGATAAAGGGACATTCAGTTGTATTTACAAA-TAAGCCATCTTTCTGGGGAGGCCATCATCACCCCAAGGGGAAGATCCCTCATCCATCTGCATTTGACCTCTCAG-----CCCCATTCCTATTTTAGAAGGTGGCATGAGAG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18321399 175 - 38779656 --------------TGTTTGCTTCAGAG---GACGTAGATGCCTACAGTATCTTACAATAAATGGACATTTGGTTGTATCCACAAA-TAAGCTGTCTTTCTGATGAGGCCATGGTCACCCCCATAGGAGGATCGATCATTCATCTGCAGTTAACCCCTCAT-----TCCCTTTTCTGTTTTAGAAGATGGCATGAGAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75812939 176 + 98207768 --------------TCTTTGCTTCAGAA---GAAGCACATGGATATAACATATTGTGATTGAGGGGCATTTGATTTTACCTACAAA-TAAATATTCTT-CTGAGGAGGCC---ATTGACCCAAAGAGAATATTGCCTCTGCGTCTCCATTTAAATTCTTAGGGTTTTCTTTTTATTATTGTAGAAGGTGGCATGAGGG i mm10.chr16 C 0 I 2541 s canFam3.chr31 11436148 164 + 39895921 --------------GATTTGTTTCAGAT---GAGGCAGAGGCTTATAATATATTATGATAG-GGAACTTTCAGTTGTATGTACAAGTTAAGCAGTAGTTTTGGGGAGGCCTTTATCCACTCAATGACAGGAT-----------CTGCGTTAGACCTCTCAG-----CCCCTCTTTAATGGTAGAACATGGCATGAGAC i canFam3.chr31 C 0 I 19 s dasNov3.JH568778 631991 177 - 6883506 aAATTTCTTTAGGAAGTTTGATTCAGAT---GAGGCAGATGTTTACAATATATTCTGATTGGGGAAAATTGAGTTGTATGTACAAA-GAAAGTTTAGGACTGTGGAGGCAGTTATTACCC-AGTGGGAGGGTCATT------------GTAAAGCTCTCAA----CCCCCTTTTCTATTTCCAAAGGTGACATGAGAG i dasNov3.JH568778 C 0 C 0 a score=75160.000000 s hg38.chr21_GL383578v2_alt 31976 4 + 63917 TCCA s panTro5.chr21 869487 4 + 33445071 TCCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554136 4 + 46275980 TCCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466231 4 - 13858734 TCCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588408 4 + 32716333 TCCA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660478 4 - 185818997 TCCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468248 4 - 192294377 TCCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913111 4 + 9440265 TCCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652829 4 + 21915920 TCCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297483 4 - 90373283 TCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625152 4 + 1337817 TCCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604044 4 - 3237654 TCCA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135374 4 + 50472720 TCCA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484108 4 + 13128814 TCCA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021633 4 - 14377064 TCCA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069378 4 + 9889416 TCCA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839352 4 + 47401472 TCCA i micMur3.chr31 C 0 I 181 s proCoq1.NW_012147997v1 1200589 4 - 2312742 TCCA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18321574 4 - 38779656 TCTG i otoGar3.GL873528 C 0 I 74 s canFam3.chr31 11436331 4 + 39895921 TCCA i canFam3.chr31 I 19 I 41 s dasNov3.JH568778 632168 4 - 6883506 TCCA i dasNov3.JH568778 C 0 I 72 e mm10.chr16 75813115 2541 + 98207768 I a score=13365.000000 s hg38.chr21_GL383578v2_alt 31980 1 + 63917 T s panTro5.chr21 869491 1 + 33445071 T i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554140 1 + 46275980 T i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466235 1 - 13858734 T i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588412 1 + 32716333 T i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660482 1 - 185818997 T i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468252 1 - 192294377 T i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913115 1 + 9440265 T i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652833 1 + 21915920 T i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297487 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625156 1 + 1337817 T i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604048 1 - 3237654 T i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135378 1 + 50472720 T i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484112 1 + 13128814 T i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021637 1 - 14377064 T i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069382 1 + 9889416 T i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1200593 1 - 2312742 T i proCoq1.NW_012147997v1 C 0 I 111 s otoGar3.GL873528 18321652 1 - 38779656 T i otoGar3.GL873528 I 74 C 0 s dasNov3.JH568778 632244 1 - 6883506 C i dasNov3.JH568778 I 72 C 0 e mm10.chr16 75813115 2541 + 98207768 I e micMur3.chr31 16839356 181 + 47401472 I e canFam3.chr31 11436335 41 + 39895921 I a score=547189.000000 s hg38.chr21_GL383578v2_alt 31981 47 + 63917 TCTTGGA-----GTGACAGACAGCCAATGGCATTAAAGGTATTAAATACTTT s panTro5.chr21 869492 47 + 33445071 TCTTGGA-----GTGACAGACAGCCAATGGCATTAAAGGTATTAAATACTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554141 47 + 46275980 TCTTGGA-----GTGACAGACAGCCGATGGCATTAAAGATATTAAATACTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466236 47 - 13858734 TCTTGGA-----GTGACAGACAGCCAATGGCATTAAAGGTATTAAATACTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588413 43 + 32716333 TCTTGGA-----AT----GACAGCCAGTGGCATCAAAGGTATTAAATACTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660483 47 - 185818997 TCTTGGA-----ATGACTGACCGCCAGTGGCATTAAAGGTATTAAATACTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468253 47 - 192294377 TCTTGGA-----ATGACTGACCACCAATGGCATTAAAGGTATTAAATACTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913116 47 + 9440265 TCTTGGA-----ATGACTGACCGCCAATGGCATTAAAGGTATTAAATACTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652834 47 + 21915920 TCTTGGA-----ATGACTGACCGCCAGTGGCATTAAAGGTATTAAATACTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297488 47 - 90373283 TCTTGGA-----GTGACTGATAGCCAATGGCATTAAAGGTATTAAATACTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625157 47 + 1337817 TCTTGGA-----ATGACTGACCGCCAATGGCATTAAAGTTATTAAATACTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604049 47 - 3237654 TCTTGGA-----ATGACTGACAGCCAATGGCATTAAAGGTATTAAATACTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135379 47 + 50472720 TCTTGGA-----ATGACTGGCAGCCAATGGCATTAAACCTATTAAATATCTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484113 47 + 13128814 TCTTGGA-----ATGACTCACAGCCAATGGCATTAAAGCTATTAAATATCTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021638 47 - 14377064 TCTTGGA-----ATGACTGACAGCCAATGGCATTAAAGCTATTAAATGTCTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069383 47 + 9889416 TCTTGAA-----ATGACTGACAGCCAATGGCATTAAAGCTGTTAAATACCTT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18321653 47 - 38779656 TTTTGGA-----ATGACAGACAGCCAGTGCCATTAAAGGTAATAAAGGTCTG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11436376 52 + 39895921 TCTTGCACTCTTGTGACTGACAGCCAATATCATTAAAGTTAATAAAGGTCTA i canFam3.chr31 I 41 C 0 s dasNov3.JH568778 632245 45 - 6883506 TCTTGGA-----GTGACTGTCAGCTAATG--AGTAAAAGTATTAAAGATCTA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75813115 2541 + 98207768 I e proCoq1.NW_012147997v1 1200594 111 - 2312742 I e micMur3.chr31 16839356 181 + 47401472 I a score=817696.000000 s hg38.chr21_GL383578v2_alt 32028 59 + 63917 ACCCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGGAAAACCCACT s panTro5.chr21 869539 59 + 33445071 ACCCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554188 59 + 46275980 ACCCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466283 59 - 13858734 ACCCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588456 59 + 32716333 ACCCTGTTATGTCGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660530 59 - 185818997 ACGCTGTTACGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468300 59 - 192294377 ACGCTGTTACGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913163 59 + 9440265 ACGCTGTTACGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGTAGAAAAACCCACT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652881 59 + 21915920 ACGCTGTTACGTTGTGGACTGGCAGGGGACCACTTTACTAGTTGGCAGAAAAACCCACT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297535 59 - 90373283 ATGCTGTTACATTGTGAACTGGCAGGGGACCACTTTACTGGTTGGTAGAAAAACCCGCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625204 59 + 1337817 ACGCTGTTACGTTGTGGACTGGCAGGGGACCACTTTACTGGCTGATAGAAAAACCCACT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604096 59 - 3237654 ACGCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTGGTTGGTAGAAAAACCCACT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135426 59 + 50472720 ACCCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTCAGTAGATAAATCCACT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484160 59 + 13128814 ACCCTGTTATGTTGTGTACTGGCAGGGGACCACTTTACTAGTTAGTAGATATATCCACT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021685 59 - 14377064 ACCCTGTTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTCAGTAGATATATCCACT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069430 59 + 9889416 ACCCTATTATGTTGTGGACTGGCAGGGGACCACTTTACTAGTTAGTAGATAAATCCACT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1200705 59 - 2312742 ACCCTCTTAAGTTGTAGACTGGCAAGGGACTATTTTACTAGTCAGTAGAAAAACCCACT i proCoq1.NW_012147997v1 I 111 I 10 s otoGar3.GL873528 18321700 57 - 38779656 ACCCTCTTAAGT--TAGACTGGCAAGGGACCATTTTATTGCTAAATAGAAAAACCTGCT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11436428 58 + 39895921 ACTCTCTTAGGTTGTGGATTGGCAGGGGACCATTTTACTAGTTAGTAG-TAAACCCACT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 632290 58 - 6883506 AACCTCTTAAGTTGTAGATAAGAAGGGGATAATTTTGCTAGGTAGTAG-AAAACCCAGT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75813115 2541 + 98207768 I e micMur3.chr31 16839356 181 + 47401472 I a score=160759.000000 s hg38.chr21_GL383578v2_alt 32087 18 + 63917 AGCACAAAAACTA-----------TTTTT s panTro5.chr21 869598 18 + 33445071 AGCACAAAAACTA-----------CATTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554247 18 + 46275980 AGCACAAAAACTA-----------CATTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466342 18 - 13858734 AGCACAAAAACTG-----------TTTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588515 18 + 32716333 AGCACAAAGACTA-----------TTTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660589 19 - 185818997 AGCACAAAGACTAT----------TTTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468359 19 - 192294377 AGCACAAAGACTAT----------TTTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913222 19 + 9440265 AGCACAAAGACTAT----------TTTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652940 19 + 21915920 AGCACAAAGACTAT----------TTTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297594 19 - 90373283 AGCACAAACACTAT----------TTTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625263 19 + 1337817 AGCACAAAGACTAT----------TTTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604155 19 - 3237654 AGCACAAAGACTAT----------TTTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135485 19 + 50472720 AGCACAAAGACTAT----------TTTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484219 19 + 13128814 AGCACAAAGACTAT----------TTTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021744 19 - 14377064 AGCACAAAGACTAT----------TTTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069489 19 + 9889416 AGCACAAAGACTAT----------TTTTT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18321757 5 - 38779656 ------------------------TTTTT i otoGar3.GL873528 C 0 I 5 s canFam3.chr31 11436486 28 + 39895921 GGTACAAAGACTTTTAAAAAAATGTATT- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 632348 18 - 6883506 AGCACAAAGACATC----------CTAT- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75813115 2541 + 98207768 I e proCoq1.NW_012147997v1 1200764 10 - 2312742 I e micMur3.chr31 16839356 181 + 47401472 I a score=228795.000000 s hg38.chr21_GL383578v2_alt 32105 15 + 63917 --------AGTAGCAAATGTGCA s panTro5.chr21 869616 15 + 33445071 --------AGTAGCAAATGTGCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554265 15 + 46275980 --------AGTAGCAAATGTGCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466360 15 - 13858734 --------AGTAGCAAATGTGCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588533 15 + 32716333 --------AGTAGCAACTGTGCA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660608 15 - 185818997 --------AGTAGCAAATGTGCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468378 15 - 192294377 --------AGTAGCAAATGTGCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913241 15 + 9440265 --------AGTAGCAAATGTGCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652959 15 + 21915920 --------AGTAGCAAATGTGCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297613 15 - 90373283 --------AGTAGCAAATGTGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625282 15 + 1337817 --------AGTAGCAAATGTGCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604174 15 - 3237654 --------AGTAGTAAATGTGCA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135504 15 + 50472720 --------AGTAGCAAACGTGCA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484238 15 + 13128814 --------AGTAGCAAATGTGTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021763 15 - 14377064 --------AGTAGCAAACGTCCA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069508 15 + 9889416 --------AGTAGCAAACGTGCA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839537 15 + 47401472 --------AGTAGCAAACCTGCA i micMur3.chr31 I 181 C 0 s proCoq1.NW_012147997v1 1200774 15 - 2312742 --------AGTAGCAAACCTGCA i proCoq1.NW_012147997v1 I 10 C 0 s otoGar3.GL873528 18321767 15 - 38779656 --------AGTAGCAAACATGTG i otoGar3.GL873528 I 5 C 0 s canFam3.chr31 11436514 15 + 39895921 --------GATAGCAAACTTGCA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 632366 23 - 6883506 AAAAAATCTTTAGTAAACCTGCA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75813115 2541 + 98207768 I a score=1676907.000000 s hg38.chr21_GL383578v2_alt 32120 102 + 63917 TTAAATGCTGTCAT-G-CAATTAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTAGTGGGATAATATTGTGGTATTGAACTACACCAGGG s panTro5.chr21 869631 99 + 33445071 TTAAATG---TCAT-G-CAATTAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGGGATAATATTGTGGTATTGAACTACACCAGGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554280 99 + 46275980 TTAAATG---TCAT-G-CAATTAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGGGATAATATTGTGGTATTGAACTACACCAGGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466375 102 - 13858734 TTAAATGCTGTCAT-G-CAATTAGACATCCTTGCAGATCAGGG-ACATAGTTAAGTAGACAGAAAAGTTATGGGGATAATATTGTGGTATTGAACTACACCAGGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588548 102 + 32716333 TTAAATGCTGTCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACGACACCAGAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660623 102 - 185818997 TTAAACGCTGTCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTATACCAGGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468393 102 - 192294377 TTAAACGCTGTCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTATACCAGGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913256 102 + 9440265 TTAAACGCTGTCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTCTTGAACTATACCAGGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5652974 102 + 21915920 TTAAACGCTGTCAT-G-CAGTAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTATACCAGGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297628 102 - 90373283 TTAAACGCTGTCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGCTAATATTGTGGTATTGAACTATACCAGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625297 102 + 1337817 TTAAACGCTGTCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTATACCAGGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604189 102 - 3237654 TTAAATGCTATCAT-G-CAATAAGACATCCTTGCAGATCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTAAACCGGGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135519 102 + 50472720 TTAAATGCTGTCAT-G-CAATAAGACATCCTTGCAGACCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTACACCGGGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484253 102 + 13128814 TTAAATGCTGTCAT-G-CAATAAGACATCCTTGCAGACCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGATATTGAACTACACCAGGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021778 102 - 14377064 TTAAATGCTATCAT-G-CAATAAGACATCCTTGCAGACCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTAAACCAGGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069523 102 + 9889416 TTAAATGCTGTCAT-G-CAATAAGACATCCTTGCAGACCAGGG-ACACAGTTAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTACACCAGGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839552 102 + 47401472 TTGAAAGCTGTCAT-G-CAATAAGTCATCCGTGCCAACCGAGGAACACAG-TAAGTAGACAGAAAAGTTATTGAGGTAATATTGTGGTATTGAACTACATGAGGG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1200789 102 - 2312742 TTGAAAGCTGTCAT-G-CAATAAGACATCCATGCCAACCAGGGAACACAG-TAAGTAGACAGAAAAGTTATTGAGATAATATTGTGGTATTGAACTACACGAGGG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18321782 101 - 38779656 TTGAAAGCTGTTGT-G-TAATAAGACATCCTTGCCAACCAGGGAACACAG-TAAGGGGACAGAAAAATTATTGAGATAATATTTTGGTATTGAACTGCAC-AAGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75815656 100 + 98207768 TTAAGAGCTCTCAA-G-GGTGAAGATGTGTTTGCAGAACACAG-AACCCAACAAGTAGACAG--AAGTTATTATGATGATACTGAACTATTGAACTACCCCTGGG i mm10.chr16 I 2541 C 0 s canFam3.chr31 11436529 103 + 39895921 TTAAAAGCTGTCATGG-TAATAAGACATCCTTGCAGACCAGGAAACACAG-TAAGTAGACTGAAAACTTATTGAGATAATATTGTCCTATTGAATTACGCTAGGg i canFam3.chr31 C 0 I 164 s dasNov3.JH568778 632389 103 - 6883506 TTAAAAGCTGTCAT-GACAATAAGACATCCTTGCAGGCCAGGGAACACAG-GAAGTGGATTGAAAAGTTGTTAAATTAATATTTTGATATTTAACTACACCAAAG i dasNov3.JH568778 C 0 C 0 a score=8235034.000000 s hg38.chr21_GL383578v2_alt 32222 543 + 63917 ATAATAGCATTGATTCACCCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TGGGCGAGTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATCCTCCTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTATTAGAGGCCTTG----AGAAATTTTATCTTGTTGTTGTGACCTGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACAACAAGGCTGACA-GTAGAAAAACACCTCTAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCCTGAGGAAACAACCAGAAGTCTCTGATGATGAAGTGAA--GGTCCATCATTTTGGAAAAGTGTCCAGGAAAGATGTGTTTTTCTGTCTCCTGCATTGCAGTCTTGCCATTCGCCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCTTCTCTGACCCTCCGTCTTTCCTGTCATTCCT s panTro5.chr21 869730 543 + 33445071 ATAATAGCATTGATTCACCCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAGTG-AAAATCAGGGAGACAGAT-TGGGCGAGTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATCCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTATTAGATGCCTTG----AGAAATTTTATCTTGTTGTTGTGACCTGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACAACAGGGTTGACA-GTAGAAAAACACCTCTAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCCTGAGGAAACAACCAGAAGTCTCTGATGATGAAGTGAA--GATCCATCATTTTGGAAAAGTGTCCAGGAAAGATCTGTTTTTCTGTCTCCTGCATTGCAGTCTTGCCATTCGCCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCTTCTCTGACCCTCCATCTTTCCTGTCATTCCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554379 543 + 46275980 ATAATAGCATTGATTCACCCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TGGGTGAGTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATCCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTATTAGATGCCTTG----AGAAATTTTATCTTGTTGTTGTGACCTGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACAACAGGGCTGACA-GTAGAAAAACACCTCTAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCCTGAGGAAACAACCAGAAGTCTCTGATGATGAAGTGAA--GATCCATCATTTTGGAAAAGTGTCCAGGAAAGATCTGTTTTTCTGTCTCCTGCATTGCAGTCTTGCCATTCGCCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCTTCTCTGACCCTCCATCTTTCCTGTCATTCCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 466477 543 - 13858734 ATAATAGCATTGATTCACCCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TGGGCGAGTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATCCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTATTAGAGGTCTTG----AGAAATTTTATCTTGTTGTTGTGACCTGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACAACAAGGCTGACA-GTAGAAAAACACCTCTAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCCTGAGGAAATAACCAGAAGTCTCTGATGATGAAGTGAA--GGTCCATCACTTTGGAAAAGTGTCCAGGAAAGATCTGTTTTTCTGTCTCCTGCATTGCAGTCTTGCCATTCGCCTTTTCCTTTTCTCAAAATGCAAATAGCATGCACTGGCTTCTCTGACCCTCCGTCTTTCCTGTCATTCCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1588650 543 + 32716333 ATAATAGCATTGACTCACCCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TGGGCGAGTCGATGATTTTGTT-CAG--TTTTT-----TCAAAAATCCTGCTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTATCAGAGGCCTTG----AGAAATTTTACCTTGTTGATGTGACCTGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACAACAAGGCTGACA-GTAGAAAAACACCTCTAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACAACCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAATGTCCAGGAAAGATTTGTTTTTCTGCCTCCTGCATTGCAGTCTTGCCATTCGCATTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCTTCTCTAACCCTCCGTCTTTCCTGTCATTCCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152660725 542 - 185818997 ATAATAGTATCGATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGACGACTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACGTATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCTGAGTGAAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAATCT-GAAAACGACAAGGCTGACA-GTAGAAAAACACCTCCAGAAACGTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACAA-CAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAGTGTCCAGGAAAGACCTGTTTTTCTGTCTCCTGCATCTCACTCTTGACATTCACCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCCTCTCTGACCCTCCGTCTTTCCTGTCATTCCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159468495 543 - 192294377 ATAATAGTATCGATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGACGACTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACGTATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCTGAGTGAAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACGACAAGGCTGACA-GTAGAAAAACACCTCCAGAAACGTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACAACCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAGTGTCCAGGAAAGACCTGTTTTTCTGTCTCCTGCATCTCACTCTTGACATTCACCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCCTCTCTGACCCTCCGTCTTTCCTGTCATTCCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913358 543 + 9440265 ATAATAGTATCGATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGACGACTCAATGATTTTGTT-CAG--CTTTT-----TCGAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACGTATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCTGAGTGAAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACGACAAGGCTGACA-GTAGAAAAACACCTCCAGAAACGTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACAACCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAGTGTCCAGGAAAGACCTGTTTTTCTGTCTCCTGCATCTCACTCTTGACATTCACCTTTTCCTTTTCTCCAAATGCAAATAGCATGCATTGGCCTCTCTGACCCTCCGTCTTTCCTGTCATTCCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653076 533 + 21915920 ATAATAGTATCGATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGACGACTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACGTATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCCGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACGACAAGGCTGACA-GTAGAAAAACACCTCCAGAAACGTCAGGGG------------AAAAATTA-TCCTTCAGTGTTT----------AGGAAACAACCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCACTTTGGAAAAGTGTCCAGGAAAGATGTGTTATTCTGTCTCCTGCATCGCACTCTTGACATTCACCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCCTCTCTGACCCTCCGTCTTTCCTGGCATTCCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12297730 533 - 90373283 ATAATAGTATCGATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGGTGACTCAATAATTTTGTT-CAC--TTTTT-----TTGAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCCGAGTGAAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACGACAAGGCTGACA-GTAGAAAAACACCTCCAGAAACGTCAGGGG------------AAAAATTA-TCCTTCAGTGTTT----------AGGAAACAACCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAGTGTCCAGGAAAGATGTGTTATTCTGTCTCCTGCATCGCACTCTTGACATTCACCTTTTCCTTTTCTCAAAATGCAAATAGCAGGTGTTGGCCTCTCTGACCCTCCGTCTTTCCTGTCATTCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625399 543 + 1337817 ATAATAGTATCGATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGGCGACTCAATGATTTTGTT-CAG--TTTTT-----TCGAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACGTATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCCGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAAACGACAAGGCTGACA-GTAGAAAAACACCCCCAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACAACCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAATGTCCAGGAAAGACCTGTTTTTCTGTCTTCTGCATCGCACTCTTGACATTCACCTTTTCCTTTTCTCAAAATGCAAATAGCATGCATTGGCCTCTCTGACCCTCCGTCTTTCCTGGCATTCCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604291 540 - 3237654 ATAATAGTATCAATTCACTCCAAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAATTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TAGGTGACTCAATGATTTTGTT-CAG--TTTTT-----TCAAAAATTCTACTGAGTCCTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTGCTAGAGTCCTTG----AGAAATTTTATCTTGCTGTTGTGACCTGAGTGAAGACTCTTCTGAAGTATCTGTGCTTTCTTCTTTGCTCATTACTGAAACCT-GAAA---ACAAGGCTGACA-GTAGAAAAACACCTCTAGAAACCTTAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACAACCAGAAGTCTCTGGTGATGGAGTGAA--GGTCCATCATTTTGGAAAAGTGTCCAGGAAAGATCTGTTTTTTTGTCTCCTGCATCGCACTCTTGACATTCACCTTTTCCTTTTCTCAAAATGCAAACAGCATGCGTTGGCCTCTCTGACCCTCTGTCTTTCCTGTCATTCCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19135621 543 + 50472720 ATAATAGCATTGATTCACCCCGAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAACTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TGGGTGACTCAATGATTTTGTT-CAG--TTTTTA----AAAAAAATCTTACTGAGTCTTCTGTGGTCAGAGTTAA---TGACATATTTGCAGTTCTTCCTGTTAGAGG-CTTG----AGAAATTCTGTCTTGCTATTGTGACCTGAGTGCAGAATCTT-TGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGGAACCT-TAAAGCAACAAGGCTGACAAGTAGAAAAACACCTCTAGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACATCCAGAAGTCTCTGGTGATGAAGTGAA--GGTCCATCATTTTGGAAAAGCATCCAGGGAAGATCTGTTTTTCTGTCTCCTGTGTTGCACTCTTGCAATTAGCCTTTTCCTTTTCTCAGAATGCAAATAGCGTTCATTGGGTTATCTGACCCTCTGTCTTTCCTGTCATTCCT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484355 542 + 13128814 ATAATAGCATTGATTCACCCCGAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAACTTTGAAGGTAAATCAATG-AAAATCAAGGAGACAGAT-TGGGTGACTCAATGATTTTGTT-CAG--TTTTT-----AAAAAAATCCTACTGAGTCTTCTGTGGTCAGAGTTAA---TGACATATTTGCAGTTCTGCCTGTTAGAGG-CTTG----AGAAATTTTGTCTTACTATTGTGACCTGAGTGCAGAATCTT-TTAAGTACCTGTGCTTTCTTCTTTGCTCATTACTGAAACCT-TAAAGCAACAAGGCTGACAGGTAGAAAAACACCTCTGGAAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACATCCAGGAGTCTCTGGTGATGAAGTGAA--GGGCCATCATTTTGGGAAAGCCTCCAGGGAAGATCTGTTTTTCTGTCTTCTGCGTTGCACTCTTGCAATTAGCCTTTTCCTTTTCTCAGAATGCAAATAGCATGCATTGGCTTATCTGACCCTCTGTCTTTCCTGTCATTCCT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7021880 542 - 14377064 ATAATAGCATTGATTCACCCTGAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAACTTTGAAAGTAAATCAATG-AAAATCAGGGAGACAGAT-TGGGTGACTCAATGATTTTCTT-CAG--TTTTT-----AAAAAAATCCTACTGAGTCTTCTGTGGTCACGGTTAA---TGACATATTTGCAGTTCTGCCTGTTAGAGG-CTTG----AGAAATTTTGTCTTACTATTGTGACCTGAGTGCAGAATCTT-TGAAGTACCTATGCTTTCTTCTTTGCCCATTACTGGAACCT-TAAAGCAACAAGGCTGACAAGTAGAAAAACACCTCTAGCAACCTCAGGGG------------AAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACATTGAGAAGTCTCTGGTGATGAAGTAAA--GGTCCATCATTCTGGGAAAGCATCCAGGGAAGATCTGTTTTTCTGTCTCCTGCATTGCACTCTTGCAATTAGCCTTTTCCTTTTCTCAGAATGCAAATAGCATGCATTGGCTTATCTGACCCTCTGTCTTTCCTGTCATTCCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6069625 543 + 9889416 ATAATAGCATTGATTCACCCCGAAAGGA---------------TATT-GTAAATAATAACCAATTAATTGTTGCAGAAACTTTGAAAGTAAATCAATG-AAAATCAGGGAGAGAGAT-TGGGTGACTCAATGATTTTGTT-CAG--TTTTT-----AAAAAAATTCTACTGAGTCTTCTGTGGTCAGGGTTAA---TGACATATTTGCAGTTCTGCCTGTTAGAGG-CTTG----AGAAATTTTGTCTTGCTATTGTGACCTGAGTGCAGAATCTT-TGAAGTACCTATGCTTTCTTCTTTGCTTATTACTGGAACCT-TAAAGCAACAAGCCTGACAAGTAGAAAAACACCTCTAGAAACCTCAGGGG-----------AAAAAATTA-TCCTTCAGTGTTTATTTTGCTTGAGGAAACATCCAGAAGTCTCTGGTGATGAAGTGAA--GTTCCATCATTTTGGGAAAGCATCCAGGGAAGATCTGTTTTTCTGTCTCCTGTGTTTCACTCTTGCAATTAGCCTTTTCCTTTTCTCAGAATGCAAATGGCATGTATTGGCTTATCTGACCCTCTGTCTTTCCTGTCATTCCT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16839654 537 + 47401472 ATAATAGCATTGATTTATCCCAGAAGGA---------------TACC-GTAAATAATAGCCAATTAATTGTTGCAGAAACTTTGAAAATATGTCAATG-AAAATCAGGGAGACAGAT-CAGGTGACTCAATGAGTTTGTT-CAG--CTTTT-----TAGAAAATCCTACCAAGTCTCCTGTGGTCAGAGTCAA---TAGCATATCTGCAGTTCTGCCTGCCAGAGGCCTTGAGACAGA------------CTATTGTGACCTGAGGGTAGGCTCTTCTGAAGTACCTATGCTT-CTTCTTTGCTCATTACTGAAACCTCAAAAAAGACAAAGCTCACAAATAGAAAGACACCTGTAAAAAGCACAGGGG-----------GGAAAATTA-TCCTTCAATCCTTGTTTTGCTTGAGGAAACAACCAAAAGTCTCTGGTGATGAGGTGAA--AGTCTGTAATTTTGGAAGAATGTCCATGAAAGATCTGTTTTTCTGTCTGCTGACTTGCACTCTTGAAATTTGCCTTTTCTTTTTCTCAAGACATAAACAGCACTCATTGGCTTCTCTGACCCTCCATTTTTCCTGTCATTCCT i micMur3.chr31 C 0 I 238 s proCoq1.NW_012147997v1 1200891 520 - 2312742 ATAATAGCATTGATTTACCCCAGAAGGA---------------TATT-GTAAATAATAGCCAATTAATTGTTGCAGAAACTTTGAAAATAAGTCAATG-AAAATCAGGGAGACAGAT-CAGGTGACTCAATCAATTTCTT-CAG--CTTTT-----TAGAAAATCCTACCAAGTCTCCTGTGATCAGAGTTAA---TAGCATATTTGCAGTTCTGCCTGCCAGAGGCCTTG----AGA------------CTATTGTGACCTGAGGGTAGGCTCTTCTGAAGTACCTGTGCTTCCTTCTTTTCTCATTATTGAAACCTCAAAAACAGCAGAGCTGACAAATAGAAAGACACTTGTAAAAAGCTCAGGGG-----------ACAAAATTA-TCCTTCAGTGGTTGTTTTGCTTGAGGAAACAACCAAAAGTCTCTGGTGATGAGGTGAA--AGTCTATAATTTTGGATGAGTGTCCATGAAAAATCTGTTTTTCTGTCTTCTGCATTGCACTC--------------TTCCTTTTCTCAAGGTGTAAACAGCACTCATTGGCTTCTCTGACCCTCCATTTCTCCTGTCATTTCT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18321883 514 - 38779656 ATAATAGTATTGATTCACTCCAGAAGGa---------------tatt-ataaataataactaattaattattGCAGAAACTTTGAAAATAAGTCAATG-AAAATCAGGGGAAAAGAT-CAAGTGATTCAGTGAGTTTATT-CAG---TTTC-----TGGAAAAGTCTACTGAGTCTCCTGTGGTCAGAGTTAA---TGGCGTATTTGCAGTTCTGCCTGCCAGAGACCTA-----AGA------------CTATTGTGACCTGAGTGTGGACTCTTCCAAAGTACCTATTCCTCCTTCTTTGCTCATTACTGAAACCTTAAAAACAACA-AGCTGACAAAT----AGACACCTGTGAAAAGCC----------------------ATTA-TCCTTCGGTGTTTATTTTGCTTGAGGAAACAACCAGAAGTCTCTGGTGATGAGTGGAA--AGTCTATCATTTTGGAAAAGTGTCCATGAAAGA--TGTTTTTCTGTCTCCTGCATTGCACTCTTGCAATTTGCCTTTTTCTTTTCTCGGGATATAAACATCACTCATTGGCTTCTCTGACCCTCTATTCCTCCTATCATTCCT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75815756 489 + 98207768 AT-----------TTTTCCATAGGGGCA---------------TATT-GCAAATGAGAACCAATTAATTGTTGCAGAAACTTTAAGTATGAATCTGTG-AGTACCAGGCAGATAGAT--GAGTAATTCCACAAGCCCATTACAG--GTCTA-----TAAATGA--CTTCTAGGTCCTCTCTGGTCAGGGTCAACGCTGCTGTGTTTGTAGTTCTGCTGGCTAGATGCGGTG-----CAAAGCCTGCCTCCCTGTCCTGACTGGAGTCTGGA-TCACCTGACGCTCCCATGCTTCCTTCGTTGCTTACAAACAAAGGCT-CTGAA--ACAAGGTTGACA---------------------------GGAG------------GTGAATGACTCCTTCAGTGTTCGTTTTGCTTGAGAAAACAACCAAAAGCCCCTGGTGAGGAGGTGAT--GATCTAT-------------TGTCCATGAAGGATCCGAGTTTCAGCTTCTCTCTCAGTGCTCCTGCAATCTGCC--TTCATTTCTACGAGATGCAAATAGCACTACTTGGCATCTCTGACCTTCAGCCTCACTTGTCATTCCG i mm10.chr16 C 0 C 0 s canFam3.chr31 11436796 568 + 39895921 ATAACAGCATTGATTCACCCCATTATTATTATTATTATCCCATTATTGGTAAATAATGACCAATTAATTGTTGCAGAAACTTTGAAAATAAATCAGTGAAAAATCAGGAAGACAGATCTGGGTGACTCAATGAGTGTGTT-TGGTTTTTTT-----TAGAAAGTCCTCCTGAGTCCTCTGTGGTCAGGGCTAA---TGGTATATTTGCAGTTCTGCCTGTCAGAAGCCTTG----TGAAATTTTATCACACTGTTGTGACCCGAGTGTGGACTCTCCCGAAGGACCTATGCCGCCTCCTTTGCTCATTACTAAAACCTTAGAAACAACACGACTGACAAGTAGAAAGACACCTGTAGAAACCTTAAGGGA----------AAAAAATTA-CCCTTTGTTGTTTGTTTTGCTTGGGAAAACAA-CAGAGGTCTCCGGTGATGAGATGGAGTGGTCTATCAGTTTGGAAGAGTGACCAGGAATGATCTATTTTTCTGTCTCCTGCATAGCACTTCTGCAATTTGCATTTTCCTTTTCTCAAGATGCAAATAGTACTCATTGACTTCTCTGACCCTCCATCTCTCCTGTCATTCCT i canFam3.chr31 I 164 C 0 s dasNov3.JH568778 632492 419 - 6883506 -------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATAGATCTTCCTGCTGA-TCCTCTGTAGTCACTGTTAA---TAATATATTTGCAGTTCTGCCTGCCAGAGGGCTTG----AAAAATTGTATTTGGCTATTGTGACCCAAGAGTGGACTCTTCGGAAGTACCTATGCTTCCTTCTTTGCTCAATACAGAAACCTTAAAAACAACAATGCTGACAACTAGAAAGACACCTGTAGGAACCTCGGGGGAGCGGGGGGGGGGGGCATTA-TCCTTCAATGTTTG-TTTGCTTGAGGAAGCA-CCAGAGGTCTCCAGTGATGAGATGAG--GTTCTACCATTTTGGAAGAG----------AGATCCGTTTTTCTATCTCTTGTATAACACATTTGCAGTTTGCAGTTTTCCTTTCTCAAGATGTAAATAGCACTCATTGGCTTCTCTGAACTTCCATCTGTCCTGTCATTCCT i dasNov3.JH568778 C 0 C 0 a score=844854.000000 s hg38.chr21_GL383578v2_alt 32765 53 + 63917 ACAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTTGCCATGT s panTro5.chr21 870273 53 + 33445071 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTCCAGTATTTGCCATGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554922 53 + 46275980 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTCCAGTATTTGCCATGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467020 53 - 13858734 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTTGCCATGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589193 53 + 32716333 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTTGCCATGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661267 53 - 185818997 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTTAAGTATTTGCCATGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469038 53 - 192294377 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTTAAGTATTTGCCATGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913901 53 + 9440265 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTTAAGTATTTACCATGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653609 53 + 21915920 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGCTAAGTATTTGCCATGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298263 53 - 90373283 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTTAAGTATTTGCCATGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625942 53 + 1337817 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTTAAGTATTTGCCATAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 604831 53 - 3237654 ATAGTTATGTTG--AGAA-AATGACATCTT--TACACAAGGTTAAGTATTTGCCATGT i colAng1.NW_012116933v1 C 0 I 332 s calJac3.chr21 19136164 53 + 50472720 ATAGTCATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTGGCCATGT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484897 53 + 13128814 ATAGTCATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTGGACATGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022422 53 - 14377064 ATAGTCATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTGGCCATGT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070168 53 + 9889416 ATAGTCATGTTG--AGAA-AATGACATCTT--TACACAAGGTCAAGTATTGGCCATGT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1201411 55 - 2312742 GTAGTCCTGTTG--AAAA-AATGACATCTTTATATAAAAGGTCAAGTATTTGCCACAT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18322397 55 - 38779656 ATAGTCCTGTTGAAAAAA-AATGATATCTT--TACAAAAGGTCAAGTACTTGCCATGA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75816245 53 + 98207768 GCAGTCATGTTG--AGAA-AATGGCTCCCT--CACAAAAGGTCACATATTTGTCATGT i mm10.chr16 C 0 C 0 s canFam3.chr31 11437364 53 + 39895921 GCAGTCATGTTG--AGAA-AGTGACATCTT--TACACAAGGTCAAGTATTTGTCATGT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 632911 54 - 6883506 GTAGTCTTGTTG--AGAAGAATGACACCTC--TACAAAAGGTCAAGTATACCACAAGT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16840191 238 + 47401472 I a score=158304.000000 s hg38.chr21_GL383578v2_alt 32818 15 + 63917 -TAGAAACAATATTTT-- s panTro5.chr21 870326 15 + 33445071 -TAGAAACAATATTTT-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554975 15 + 46275980 -TAGAAACAATATTTT-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467073 15 - 13858734 -TAGAAACAATATTTT-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589246 15 + 32716333 -TAGAAACAATATTTT-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661320 15 - 185818997 -TAGAAACAATATTTT-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469091 15 - 192294377 -TAGAAACAATATTTT-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913954 15 + 9440265 -TAGAAACAATATTTT-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653662 15 + 21915920 -TAGAAACAATATTTT-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298316 15 - 90373283 -TAGAAACAATATTTT-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 625995 15 + 1337817 -TAGAAACAATATTTT-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605216 15 - 3237654 -TAGAAACAATATTTT-- i colAng1.NW_012116933v1 I 332 C 0 s calJac3.chr21 19136217 15 + 50472720 -AAGAAACAATATTTT-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484950 15 + 13128814 -AAGAAACAATATTTT-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022475 15 - 14377064 -AAGAAACAATATTTT-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070221 15 + 9889416 -AAGAAATAATATTGT-- i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1201466 14 - 2312742 --AAGAACAATATTTT-- i proCoq1.NW_012147997v1 C 0 I 13 s otoGar3.GL873528 18322452 11 - 38779656 --AAG---AATATTTT-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75816298 15 + 98207768 -AATAAACTACATTTC-- i mm10.chr16 C 0 I 2 s canFam3.chr31 11437417 11 + 39895921 -----AAGAAAACTCT-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 632965 18 - 6883506 GAGAAAACCACATTCCTC i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16840191 238 + 47401472 I a score=230100.000000 s hg38.chr21_GL383578v2_alt 32833 24 + 63917 TT----CCCAAGAATTCTGTTTTCAAGA s panTro5.chr21 870341 24 + 33445071 TT----CCCAAGAATTCTGGTTTCAAGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14554990 24 + 46275980 TT----CCCAAGAATTCTGGTTTCAAGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467088 24 - 13858734 TT----CCCAAGAATTCTGGTTTCAAGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589261 24 + 32716333 TT----CCCAAGAATTCTGGTTTCAAGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661335 28 - 185818997 TTTTTCCCCAAGAATTCTGGTTTCAAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469106 28 - 192294377 TTTTTCCCCAAGAATTCTGGTTTCAAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913969 28 + 9440265 TTTTTCCCCAAGAATTCTGGTTTCAAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653677 28 + 21915920 TTTTTCCCCAAGAATTCTGGTTTCAAGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298331 28 - 90373283 TTTTCCCCCAACAATTCTGGTTTCAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626010 28 + 1337817 TTTTTCCCCAAGAATTCTGGTTTCAAGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605231 28 - 3237654 TTTTTCCCCAAGAATTCTGGTTTCAAGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136232 26 + 50472720 TCTT--CCTAAGAATTATGGTTTCAGGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484965 26 + 13128814 TCTT--CCTAAGATTTATGGTTTCAAGA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022490 26 - 14377064 TCTT--CCTAATAATTATGGTTTCAAGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070236 26 + 9889416 TCTT--CCTAAGAATTATGGTTTCAAGA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18322463 26 - 38779656 TCTT--TCTCAGAATTATAATGTTGAAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75816315 21 + 98207768 ----TCTCTCAGGATT---ATCTCAAAC i mm10.chr16 I 2 C 0 s canFam3.chr31 11437428 19 + 39895921 ---------CAGAATTATGATCTCAAGA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 632983 24 - 6883506 ----TTTCTCAGAATTATGTACTCAAGA i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1201480 13 - 2312742 I e micMur3.chr31 16840191 238 + 47401472 I a score=1054461.000000 s hg38.chr21_GL383578v2_alt 32857 79 + 63917 TACACAGGTAAGAAGTTAGTTTACTTAAA-TCCTT-CAATCAACTTTTATTTATTTGAACCATAA-ATAATGTACCCACTTT s panTro5.chr21 870365 79 + 33445071 TACACAGGTAAGAAGTTAGTTTACTTAAA-TCCTT-CAATCAACTTTTATTTATTTGAACCATAC-ATAATGTACCCACTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14555014 79 + 46275980 TACACAGGTAAGAAGTTAGTTTACTTAAA-TCCTT-CAATCAACTTTTATTTATTTGAACCATAA-ATAATGTACCCACTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467112 79 - 13858734 TACACAGGCAAGAAGTTAGTTTACTTAAA-TCCTT-CAATCAACTTTTATTTATTTGAACCATAA-ATAATGTACCCACTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589285 79 + 32716333 TACACAGGCAAGAAGTTGGGTTACTTAAA-TCCTT-CAGTCAACTTTTATTTATTTGAACCATAA-ATAATGTACCCACTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661363 79 - 185818997 TACACAGGCAAGAAGTTGGGTTACTTAAA-TCATT-CAATCAACTTTTATTTATTTGATCCATAA-ATAATGTACCCACTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469134 79 - 192294377 TACACAGGCAAGAAGTTGGGTTACTTAAA-TCATT-CAATCAACTTTTATTTATTTGATCCATAA-ATAATGTACCCACTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5913997 79 + 9440265 TACACAGGCAAGAAGTTGGGTTACTTAAA-TCATT-CAATCAACTTTTATTTATTTGATCCATAA-ATAATGTACCCACTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653705 79 + 21915920 TACACAGGCAAGAAGTTGGGTTACTTAAA-TCGTT-CAATCAACTTTTATTTATTTGATCCATAA-ATAATGTACCCACTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298359 79 - 90373283 TACACAAGCAAGAAGTTGGGTTACTTAAA-TCGTT-CAATCAACTTTTATTTATTTGAACCATAA-ATAATGTACCCACTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626038 79 + 1337817 TACACAGGCAAGAAGTTGGGTTACTTAAA-TCGTT-CAATCAACTTTTATTTATTTGATCCATAA-ATAATGTACCCACTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605259 79 - 3237654 TACGCAGGCAAGAAGTTGGGTTACTTAAA-TCATT-CAATCAACTTTTATTTATTTGAACCATAA-ATAATGTACCCACTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136258 79 + 50472720 TATATAGGCAAGAAGTTAGGTTACTAAAA-TCCTT-CTATCAACTTTTATTTATTTGAACCATAA-AGAATGTACCCATTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2484991 79 + 13128814 TATATAGACAAGAAGTTAGATTACTAAAA-TCCTT-CTATCAACTTTAATTTATTTGAACCATGA-AGAATGTACCCATTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022516 79 - 14377064 TATATAGGCAAGAAGTTAGGTTACTAAAA-TCCTT-CTATCAACTTTTATTTATTTGAACCATAA-AGAATGTACCCATTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070262 75 + 9889416 TATATAGGCAAGAAGTTAGGTTACTAAAA-TCCTT-CTATCAACT----TTTATTTGAACCATAA-AGAATGTACCCATTTT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1201493 78 - 2312742 TACAGAGGCAAGAAGTTAGGTTACCAAAA-TCCTT-CAATTGTGTTTTATTTGAAAGAACCATAA-AGAATATACTC-CTTT i proCoq1.NW_012147997v1 I 13 C 0 s otoGar3.GL873528 18322489 78 - 38779656 TACAGAGGCAAGAAGTTAGGTTACCAAAA-TCCTT-CAATTAAGTTTTGTTTGTTTGAACCATAA-AGAATGGACCC-CTTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75816336 74 + 98207768 TGTA-ATGTAAGGAGTTAGGTCGCCAAAA-TTTCCACAGTCAA-----GTTTGTGGGAATCATAA-TGAATGTAACCCCTCT i mm10.chr16 C 0 C 0 s canFam3.chr31 11437447 78 + 39895921 TACAGAAGGAAAAAGTTAGGTTACTAAAA-TCTTT-CAATTGAGTGT-ATCTGTTCAAATCACGA-GGGACACACCCTCTTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 633007 80 - 6883506 TATAAAGGCAGGAAGTAAAGTTACCTAAATTCCTT-CAATCAAGTTT-ATTTGATTGAATCATAAGAAAATGTGCCCACTTT i dasNov3.JH568778 C 0 M 293 e micMur3.chr31 16840191 238 + 47401472 I a score=1352620.000000 s hg38.chr21_GL383578v2_alt 32936 108 + 63917 ATAGAAATTTTGGATGAGTTACATGGAGGTTAGCGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTGG--------------------------------------------------------TGG-T-GTTCAATAGCCTAAGCAT s panTro5.chr21 870444 109 + 33445071 AAAGAAATTTTGGATGAGTTACATGGAGGTTAGCGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTGG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14555093 109 + 46275980 AAAGAAATTTTGGATGAGTTACATGGAGGTTAGCGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTGG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467191 109 - 13858734 ATAGAAATTTTGGATGAGTTATATGGAGGTTAGCGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTGG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589364 109 + 32716333 ATAGAAAGTTTGGATTAGTTACATGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTAT--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661442 109 - 185818997 ATAGAAACTTTGGATTAGTTCCATGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATTT------------CTT---TGAGTCCCTAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469213 109 - 192294377 ATAGAAACTTTGGATTAGTTCCATGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATTT------------CTT---TGAGTCCCTAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5914076 109 + 9440265 ATAGAAACTTTGGATTAGTTCCATGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATTT------------CTT---TGAGTCCCTAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653784 109 + 21915920 ATAGAAACTTTGGATTAGTTCCATGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298438 109 - 90373283 ATAGAAACTTTGGATTAGTTCCATGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626117 109 + 1337817 ATAGAAACTTTGGATTAGTTCCTTGGAGGTTAGTGTTTAATGAAAGTTTT-ATCCTTCTTTACTGTGTCATCT------------CTT---TGAGTCCCTAG--------------------------------------------------------TGAGT-GTTCAATAGCCTAAGCAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605338 109 - 3237654 ATAGAAACTTTGGATTAGTTCCATGGAGGTTAGTGTTTAATGAACGTTTT-ATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCTAG--------------------------------------------------------CGGGT-GTTCAATAGCCTAAGCAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136337 110 + 50472720 ATAGAAACTTTAGACGCATTACGTAAAGATTAGTGTTTAATGAAAGTTTTCATCTTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCCAG--------------------------------------------------------TGGGT-GTTCAATAGGCTAAGCAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2485070 109 + 13128814 ATAGAAGCTTTAGATGCATTACATAAAGGTTAGTGTTTAATGAAGGTTTTCATCCTTCTTTTCTCTGTCCTCT------------C-T---TGAGTCCCCAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022595 110 - 14377064 ATAGAAACTTTAGATGCATTACATAAAGGTTAGTGTTTAATGAAAGTTTTCATACTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCCAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070337 110 + 9889416 ATAGAAACTTTAGATGCATTATATAAAGGTTAGTGTTTAATGAAAGTTTTCATCCTTCTTTACTCTGTCATCT------------CTT---TGAGTCCCCAG--------------------------------------------------------TGGGT-GTTCAATAGCCTAAGCAT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1201571 110 - 2312742 ACGAATACTTTGGATTGGTGACATGGAGGTGAGTCTTTAATGAAAGTTTTCATCCTTCTTTACTCTCTCATCT------------CTT---TGAGTCCCTAG--------------------------------------------------------AGGAC-ATTCAGAAGCCTAAGCAT i proCoq1.NW_012147997v1 C 0 I 3 s otoGar3.GL873528 18322567 109 - 38779656 ATGAATACCTTGGATTAGTTACATGGAGGTGAGTCTTACATGAAAGTTTTCATCCTTGTTTACTCTGTCATCT------------CCT---TGAGTCCCTAG--------------------------------------------------------TGGAT-ATTCAGATG-CTAAGCAT i otoGar3.GL873528 C 0 I 3 s mm10.chr16 75816410 105 + 98207768 GTAGACACTGTGAATTGGTTTCTGGAAGGTGAGTTTTTATTGAAAACTTTCAGGTTTGTTTACTCTGTCATTT------------TTTGGGTGGGTCTCCAG--------------------------------------------------------AAGGC-ATTCACAGGT-------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11437525 179 + 39895921 ATGGATGCTTTGGGTTACTTATGAGGAGGTAAGTCTTTAATGAAAGTTTTTATCATTCTTTACGCTGTCATCTAATTCCCTCCTGCCT---TCAGAACCTAAGCAATTCTACCTCTGCTTGAGGTTGTTTTCAGAATGTGGTAAAGTTTTAgagctcctgggtggctcaatcggttaagcat i canFam3.chr31 C 0 I 74 e micMur3.chr31 16840191 238 + 47401472 I e dasNov3.JH568778 633087 293 - 6883506 M a score=1220623.000000 s hg38.chr21_GL383578v2_alt 33044 88 + 63917 TCCTC----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------AGATATGGT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC s panTro5.chr21 870553 88 + 33445071 TCCTC----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14555202 88 + 46275980 TCCTC----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467300 88 - 13858734 TCCTC----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589473 88 + 32716333 TCCTC----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-AAAGTTAGGAGGCAGTCATTGCAA-----------------ACAGATGAGAAATGACAGCAGCTTTAAGGAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661551 88 - 185818997 TCCTC----------CTGCTTGAGGTTGTTCTTA---------------------------------------------------------------------------------GGATATGAT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469322 88 - 192294377 TCCTC----------CTGCTTGAGGTTGTTCTTA---------------------------------------------------------------------------------GGATATGAT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5914185 88 + 9440265 TCCTC----------CTGCTTGAGGTTGTTCTTA---------------------------------------------------------------------------------GGATATGAT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653893 88 + 21915920 TCCTC----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATATGAT-AAAGTTATGAGGCAGTCATCGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGGC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298547 88 - 90373283 TCCTC----------CTGCTTGAGGTTGTTTATA---------------------------------------------------------------------------------GGATATGAT-AAAGTTATGAGGCAGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626226 88 + 1337817 TCCTT----------CTGCTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATATGAT-AAAGTTATGAGGCAGTCATCGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGGC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605447 91 - 3237654 TCCTC----------CTGCTTGAGGTTGTTTTTA-------------------------------------------------------------------------------GGGGATATGATAAAAGTTATGAGGCGGTCATTGCAA-----------------ACAGATGAAAAATGACAGCAGCTTTAAGGAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136447 88 + 50472720 TTCTC----------CTGCTTGAAGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-ACAGTTAAGAGGCACTCATTGCAA-----------------ATAGACAAAAAAGGACAGCAGCTTTAAGGGC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2485179 88 + 13128814 TTCTC----------CTGCTTGAAGTTGTTTTTA---------------------------------------------------------------------------------GGATATGCT-ACAGTTATGAGGCACTCATTGCAA-----------------ACAGACGAAAAACGACAGCAGCTTTAAGGGC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022705 88 - 14377064 TTCTC----------CGGCTTGAAGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-ACAGTTATGAGGCACTCATTGCAA-----------------ACAGATGAAAAACGACAGCAGCTTTAAGGGC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070447 88 + 9889416 TTCTC----------CAGCCTGAAGTTGTTTTTA---------------------------------------------------------------------------------GGATATGGT-ACAGTTATGAGGCACTCATTGCAA-----------------ACAGATGAAAAACGACAGCAGCCTTAAGGGC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16840429 85 + 47401472 TCCTC----------CTGGTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGATGTGGT-AAAGTCATAAAGCAGTCATTGCCA-----------------ACAAATAAAAAATGATAGCACCTTT---GAC i micMur3.chr31 I 238 C 0 s proCoq1.NW_012147997v1 1201684 88 - 2312742 TCCTC----------CTGGTTGAGGTTGTTTTTA---------------------------------------------------------------------------------GGACATGAT-AAAGTCATAAAGCTGTCGTTGCAA-----------------ACAAATAAAAAATGATAGCACCTTCAAGGAC i proCoq1.NW_012147997v1 I 3 C 0 s otoGar3.GL873528 18322679 87 - 38779656 TTTTT----------CTGCTTGAGGTTGTTTCTA---------------------------------------------------------------------------------GGATGTGGT-AAAGTCATAAAGCAGTCATTGCAA-----------------ACAAAT-AAAAATGGCAGCACATCTGAAGAC i otoGar3.GL873528 I 3 C 0 s mm10.chr16 75816515 97 + 98207768 TTCTC----------ATTTTGGAAGATCCTTATA---------------------------------------------------------------------------------GAATGTGGC-AAA--------GCATTTATTACaaaaaagaaaaagagaaagaaagaaggaaaACTACAACATTTTCAAGGAC i mm10.chr16 C 0 I 4064 s canFam3.chr31 11437778 179 + 39895921 tgctcagtggggaatctgctggaggttctctctacctccaccccttccacctcccctcacttgtgctctctctttcaaataaataaatcttaaaaaaCACAGACACATACAAAAAGAATGTGGT-AAAGTTTTGAGGCAGTCATTCCAA-----------------ACAAGTAAAAAATAACAGTACCTTCAAAGAA i canFam3.chr31 I 74 C 0 e dasNov3.JH568778 633087 293 - 6883506 M a score=167113.000000 s hg38.chr21_GL383578v2_alt 33132 15 + 63917 ATGTGTGCAC-CTAAG s panTro5.chr21 870641 15 + 33445071 ATGTGTGCAC-CTAAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14555290 15 + 46275980 ATGTGTGCAC-CTAAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467388 15 - 13858734 ATGTGTGCAC-CTAAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589561 15 + 32716333 ATGTGTGCAC-CTAAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661639 15 - 185818997 ACGTGTGCAC-CTAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469410 15 - 192294377 ACGTGTGCAC-CTAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5914273 15 + 9440265 ACGTGTGCAC-CTAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653981 15 + 21915920 ACGTGTGCAC-CTAAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298635 15 - 90373283 ACGTGTGCAC-CTAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626314 15 + 1337817 ACGTGTGCAC-CTAAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605538 15 - 3237654 ACGTGTGCAC-CTAAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136535 16 + 50472720 CTGTATACAACCAAAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2485267 15 + 13128814 CTGTATGCGG-CAAAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022793 15 - 14377064 CTGTATGCAG-CAAAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070535 15 + 9889416 CTGTATGCAC-CAAAG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16840514 15 + 47401472 ATGTGTGCAT-CTGAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1201772 15 - 2312742 ATGTGTGCAT-CTGAG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18322766 15 - 38779656 ATCTATGCAA-TTTAG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11437957 13 + 39895921 --ATATGCAT-CTAAA i canFam3.chr31 C 0 C 0 e mm10.chr16 75816612 4064 + 98207768 I e dasNov3.JH568778 633087 293 - 6883506 M a score=5649755.000000 s hg38.chr21_GL383578v2_alt 33147 426 + 63917 GGAAGATTTTGAAGG--------TTTAAAATTAGCCAAAGATTACTCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTTTAAAATGC-TTATTATTGTACT--AATTCATAATAAGAACAGCTTACATACactgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatcttttaataat-cccccactttactggtaaATTGG-CTAtcccttcacctcacccttacatcatcaccagtcctattgatttgattctatctccagtatacaactcaaacaagccactgagct-caaatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcaatagcaattt----------------tattttc s panTro5.chr21 870656 426 + 33445071 GGAAGATTTTGAAGG--------TTTAAAATTAGCCAAAGATTACTCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAATATAATTTTAAAGTTC-TTATTATTGTAGT--AATTCATAATAAGAACAGCTTACATACactgggtgcttcctgtatgcatctgatatgcattatcttatttaatgctcaccatgaatgtgtata------g----tagatcttttaataat-ccctcactttactggtaaATTGG-CTAtcccttcacctcacccttacatcatcaccagtcctattgatttgattctatctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcaatagcaattt----------------tattttc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14555305 426 + 46275980 GGAAGATTTTGAAGG--------TTTAAAATTAGCCAAAGATTACTCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAATATAATTTTAAAGTTC-TTATTATTGTAGT--AATTCATAATAAGAACAGCTTACATACactgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatcttttaataat-ccctcactttactggtaaATTGG-CTAtcccttcacctcacccttacatcatcaccagtcctattgatttgattctatctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcaatagcaattt----------------tattttc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467403 426 - 13858734 GGAAGATTTTGAAGG--------TTTAAAATTAGCCAAAGATTACTCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTTTAAAGTGC-TTATTATTGTACT--AATTCATAATAAGAACAGCTTACATACactgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatcttttaataat-cccccactttactggtaaATTGG-CTAtcccttcacctcacccttacatcatcaccagtcctattgatttgattctatctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcaatagcaattt----------------tattttc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1589576 426 + 32716333 AGAAGATTTTGAAGG--------TTTAAAATAAGCCAAAGATTACTCCTCAATTTTCTTCAACTCTCAACCAATATA---AGGATACTCACTTTCTAAA-----CAGACTAGCTGAAAATAATTTTAAAGTGC-TTATTATTGCACT--AATTCATaataagaacagcttacatacactgagtgctttctgtgtgcatctgatatgcattatcttatttaatgatcaccatgagtgtgtata------g----tagatcttttgataat-ccccgattttactggtaaATTGG-CTAtcccttcacctcacccttacatcaccaccagtcctatggattagattctatctcaagcatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcaatagcaattt----------------tattttc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152661654 426 - 185818997 GGAAGATTTTAGAGG--------TTTAAAATTAGCCAAAGATTGCCCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTTTAAAGTGC-TTATGGTTGTACT--AATTCACaataataacagtttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatattttaataat-cccccattttactggtaaATTGG-CTAtccctttacctcacccttacatcatcgccagtcctattgatttgattctacctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcagtagcaattc----------------tattttc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469425 426 - 192294377 GGAAGATTTTAGAGG--------TTTAAAATTAGCCAAAGATTGCCCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTTTAAAGTGC-TTATGGTTGTACT--AATTCACaataataacagtttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatattttaataat-cccccattttactggtaaAttga-ctatccctttacctcacccttacatcatcgccagtcctattgatttgattctacctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcagtagcaattc----------------tattttc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5914288 426 + 9440265 GGAAGATTTTAGAGG--------TTTAAAATTAGCCAAAGATTGCCCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTTTAAAGTGC-TTATGGTTGTACT--AATTCACaataataacagtttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatattttaataat-cccccattttactggtaaattga-ctatccctttacctcacccttacatcatcgccagtcctattgatttgattctacctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcaccattatctctca-ctt----agcctgctgcagtagcaattc----------------tattttc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5653996 426 + 21915920 GGAAGATTTTGGAGG--------TTTAAAATTAGCCAAGGATTGCCCCTCAATTTTCTTCAACTCCCAACCAATATA---AATATACTCACTTTCTAAA-----TAGACCAGCTGAAAATAATTTTAAAGTGC-TTATGGTTGTACT--AATTCATaataataacagtttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgttta------g----tcgatattttaataat-cccccattttactggtaaattga-ctatccctttacctcacccttacatcatcgccagtcctattgatttgattctacctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcagtagcaattt----------------tattttc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12298650 426 - 90373283 GGAAGATTTTGGAGG--------TTTAAAATTAGCCAAAGATTGCCCCTCAATTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTTTAAAGTGC-TTATGGTTGTACT--AATTCACaataataacagtttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcatcatgagtgtgttta------g----tagatattttaataat-ccctcattttactggtaaAttga-ctatccctttacctaacccttacatcatcgccagtcctattgatttgattctacctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcagtagcaattt----------------tattttc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626329 426 + 1337817 GGAAGATTTTGGAGG--------TTTAAAATTAGCCAAGGATTGCCCCTCAATTTTCTTCAACTCCCAACCAATATA---AATATACTCACTTTCTAAA-----TAGACCAGCTGAAAATAATTTTAAAGTGC-TTATGGTTGTACT--AATTCATaataataagagtttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtcta------g----tggatattttaataat-cccccattttactggtaaattga-ctatccctttacctcacccttacatcatcgccagtcctattgatttgattctacctccagtatacaactcaaacaagccactgagct-catatccaggggcaatgtgctaatttaagtcactattatctctca-ctt----agcctgctgcagtagcaattt----------------tattttc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605553 427 - 3237654 GGAAGATTTTGAAGG--------TTTAAAATTTGCCAAAGATTGCCCCTCAGTTTTCTTCAACTCCCAACCAATATA---AAGATACTCACTTTCTAAA-----TAGACTAGCTGAAAATAATTGTAAAATGC-TTATGATTGTACT--AATTCATaataataacagtttacatacattgggtgctccctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtgtgtata------g----tagatattttaataatccccccattttactggtaaattga-ctatccctgtacctcacccttacatcattaccagtcctattgatttgattctacctccagtatgcaactcaaacaagccactgagct-catatccaggggcaatatgctaatttaagtcactattatctctta-ctt----agcctgctgcagtagcaattt----------------tattttc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136551 413 + 50472720 GGAAGATTTTGAAGG--------CTAAAAATTAGCCAAAGATTACCCTTCAGTTTTCTTCAACTGACAACCAATATA---AAGATATTCACTTTCTAAA-----TAGAATGGCTGAAAATAATTTTAAAGTGC-TTAATATTGTACT--AACTCATaataataacagcttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtctgtata------g----tagatcttttaataat-ccctcattttaATGGTAAAATGG-CTATCctttcacttcacctttacatcatcaccagtcctattgatttgattctacctccagtatacaacacatacaaaccacttagct-catatccagggacaatgtgttaatttgagtcactatcgtctctca-ttt----agcctact-----------------------------tattttc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2485282 404 + 13128814 GGAA---------------------AAAAATTAGCCAGAGATTACCCTTCAGCTTTCTTCAACTGACAACCAATATA---AAGATATTCACTTTCTAAATAG-TTAGAATGGCTGAAAATATTTTTAAAGTGC-TTAATGTTGTACT--AACTCATaataataacagcttacaaacattgggtgcttcctgtgtgcatctaatatacattatcttatttaatgctcaccatgagtctgttta------g----tagatcttttaataat-ccctcattttaccggtaaATTTG-ctatcccttcacctcacctttacatcatcaccagtcctattgatttgattctacctttagtatacaactcatacaagccacttagct-catatccagggtcaatgtgttaatttgagtcactatcatctctca-ttt----agcttact-----------------------------ttttttc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7022808 410 - 14377064 GGAAGATTTTG-AGG--------CTAAAAATTAGCCAAAGATTACCC------TTTCTTCAACTGACAACCAATATA---AAGATATTCACTTTCTAAATAG-TTAGAATGGCTGAAAATAATTTTAAAGTGC-TTAGTATTGTACT--AACTCATaataataacagcttacatactttgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtctgtata------g----tagatctgttaataat-cccccattttactggtaaATTGG-ctatcccttcacctcacctttacatcatcaccagtcctattgatttgattctacctccagtatacaactcatacaagccacttagct-catatccagggacaatgtgttaatttgagtcactgtcgtctctca-ttt----agcttact-----------------------------tcttttc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070550 412 + 9889416 GGAAGATTTTGAAGG--------CTAAAAGTTAGCCAAAGATTACCCTTCAGTTTTCTTCAACTGGCAACCAATATA---AAGATATTCACTTTCTAAATAG-TTAGAATGGCTGAAAATAATTTTAAAGTGC-TTAATATTGTACT--AACTCATaataataacagcttacatacattgggtgcttcctgtgtgcatctgatatgcattatcttatttaatgctcaccatgagtctgtata------g----tagatcttttaataat-ccctcattttactggtaaATTGG-CTATCCCTTCACCTTACCTTTACATCATCACCAGTCCAATTGATTTGATTCTACCTCCAGTATACAACTCATACAAGCTGCTTAGCT-CATATCCAGGGACAATGTG-----TTGAGTCACTATCGTCTCTCA-TTT----AGCCTACT-----------------------------TCTTTTC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16840529 427 + 47401472 GGAAGATTTTGAGGGTTCAGAATTTCAAAATT--------ATTACCCCTCAATTTTATTCAACTCCCAACCATTATAAAGATACTACTCACTTTCTGGGTAATTTAGAATGACTGAAAATAATTTTAAAGTGC-TTATTATTGTActtacatttataatgatggcaacttatatacattcaatgcttcctgtgtgcatctg-----tattatctcatttaatgttcaccatgagcctgtgtg------g----tggatcatttttatat-ccctcatttttctggtaagCTGGCttatctcattacctcacacttatgtgatcaccagtcctact-----gattctacctccagtaaacaactcaagcaatacacttagctccagatcca-ggtcaacaggctagtttgagtcactatcatccctca-ttt----agtctcctgcaataatggttta---------------tctttt- i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1201787 420 - 2312742 GGAAGATTTTGAGGG--------TTCAAAATT--------ATTACCCCTCAATTTTATTCAACTTCCAACCAGTATAACCAGTATACTCACTTTCTGGGCAATTTAGAATGACTGAAAATAATTTTAAAGTGC-TTATTATTGTACTCACACTTATAATGATGGCaacttatatacattgaatgcttcctatgtgcatctg-----tattacctcctttaatgctcaccacaaacctgtgtg------g----tggatcatttttatat-ccctcgtttgacTGGCAAGTTGG-TTATCCCTTTacctcacatttacatgatcaccactcctact-----gattttacctccagtcaacaactggaacaatgcacttagctccagatccagggtggacatgctagtttaagtcactatcattcctcatttt----agtctcctgcaataatggttta---------------tctttt- i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18322781 440 - 38779656 GGAATATTTGGAGGG--------TTCCAAATT--------ATTACCCCTCAATTTTCTTCAGTATCCAACTAATATA---ATTATACTCACTTTCTTGACAATTTAGAATGACTGAAAATAATTTTAAAGTAC-TTATTATCGTAATCATATTTATAATGatgatgactcacatacactgaatgcttcctatgtgcatctgatatctgttatctcatttaatgctcaccacaagcctatgtg------gtagatggatcatttttgtat-tcctcgctttactggtaggctgg-ctacccctttaccacaca-gtatgtcatcaccagtcctgtta----aattatacttgcagtaaacaattcaaacaaggtccttagctacagatccagcgtcaacatgctagtttaagtcactgtcatctgcca-ttt----agtctcctacaataatggtttatatgttcattcttcttctttt- i otoGar3.GL873528 C 0 I 286 s canFam3.chr31 11437970 416 + 39895921 GGAAGAT-------G--------TTCAAAATTAGCCACTTATCACCCCTCAATATTCTTTAGCTCCCAACCAGTTTA---AAGATACTCATTTTCTGGGCAATTTAAAGTGACTGCAAATCATTTTAAACTTC-TTACTATTATATC--TA-TCTTTGTGATAACagcttacatacattgaatgcttcctgtgtgcacttgatatgcattatcttacttaatgctcaccgtgaatctgtatgcatggtg----gacacttttttttatc-ccttcattttcctggtaagTCAG-CCATCCCTTCATCTC-CCACTATATCA----CAGCCCTAT------GAATATACCCCCAGGATACAATTGGA--CAGTTACAAAGCTccatttacaggatcaacccgttagttcaagacactatcaacgtcca-atg----ggcctcgtg-agtaacagttc----------------tctttcc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 633380 430 - 6883506 GGAAAGTTTTGATGA--------TTCAGCCTTAGCCAATTATCACCTCTCAACTTTTTTAAATTCCAACCCAATATA---AAGATACTCACATTCTGGGCAATTTAGAATGattataattaatttaaaaatttgtttttattGCATTTATGTCTATAATAATTTCAGCTTATACACATTGAATGCTTT-GATGTgtaccttatatgcattatcttatttacttctcaccatgagcccgtgtg------g----tagattatttttt-at-ccccca-tttagtgacaagTTG--CCAtcccttcacctcatactcatgttatcaacagtcctgtt-----aattctaattccaggatacatctcaagcagtctgcttagctccatagttaaggtcaacatgctaattaaagtcactattatccctca-tatataaagcctcctgcaataactgttc----------------ttttttt i dasNov3.JH568778 M 293 C 0 e mm10.chr16 75816612 4064 + 98207768 I a score=4267039.000000 s hg38.chr21_GL383578v2_alt 33573 304 + 63917 cattctgactcccatccaatt-------ctcttagtagccagaattacctttt-aaaaatgcatattgagtcatgtgg-----ctcctccac-aaaaaattctggtctgcaaaattctgcaggcattgacccaccatgccctgcctgttctgaccctgc-----------tgcttacttctccattcttaccttttacagc------------ctc-ttcttgctcaccccattccaggctcatggtagtctttcccttctagagcatgcat------tcttgtcttcacatgtgctgtttgtacccaggctgcctgaagtact-----------cccccagaatttgcctggctactc s panTro5.chr21 871082 304 + 33445071 cattctgactcccatccaatt-------ctcttagtagccagaattatctttt-aaaaatgcatattgagtcatatgg-----ctcctccac-aaaaaattctggtctgcaaaattctgcaggcattgacccaccatgccctgcctgttctgaccctgc-----------tgcttacttctccattcttaccttttacagc------------ctc-ttcttgctcaccccattccaggctcatggtagtctttcccttctagagcatgcat------tcttgtcttcacatgtgctgtttgtacccaggctgcctgaagtact-----------cccccagaatttgcctggctactc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14555731 304 + 46275980 cattctgactcccatccaatt-------ctcttagtagccagaattatctttt-aaaaatgcatattgagtcatatgg-----ctcctccac-aaaaaattctggtctgcaaaattctgcaggcattgacccaccatgccctgcctgttctgaccctgc-----------tgcttacttctccattcttaccttttacagc------------ctc-ttcttgctcaccccattccaggctcatggtagtctttcccttctagagcatgcat------tcttgtcttcacatgtgctgtttgtacccaggctgcctgaagtact-----------cccccagaatttgcctggctactc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 467829 304 - 13858734 cattctgactcccatccaatt-------ctcttagtagccagaattacctttt-aaaaatgcatattgagtcatatgg-----ctcctccgcaaaaaaattctggtctgcaaaattctgcaggcattgacccaccatgccctgcctgttctgaccctgc------------gcttacttctccattcttaccttttacagc------------ctc-ttcttgctcaccccattccaggctcatgatagtctttgccttctagagcatgcat------tcttgtcttcacatgtgctgtttgtatcccagctgcctgaagtact-----------cccccagaatttgcctggctactc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590002 304 + 32716333 cattctgactcccatccaatt-------ctcctagtagccagaattacctttg-aaaaatgcatattgagtcatatgg-----ctcctccac-aaaaaattctggtctgcaaaattctgcaggcattgacccaccatgccctgcctgttctgaccctgc-----------tgcttacttctccattctcactttttacagc------------ctc-ttcttgcccactccagtctaggctcatggtagtctttcccttctagagcatgcat------tcttgtcttcacatgtgctgtttgtacccaggctgcctgaagtact-----------cccccagaatttgcctggctactc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152662080 301 - 185818997 cattctgactcccatccaatt-------ctcctagtagccagaattacctttt-aaaaatgcatattgagtcatatgg-----ctcctccac-ataaaattctggtctgcaaaattctgcaggcattgacccaccataccctgcccgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcaccccactccaggctcatggtagtctttcccttgtagagcatgcgt------tcttgtcttcacatgagctgtttgtacccaggctgcctgaagtact-----------cccccagaattttcctggctactc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159469851 301 - 192294377 cattctgactcccatccaatt-------ctcctagtagccagaattacctttt-aaaaatgcatattgagtcatatgg-----ctcctccac-ataaaattctggtctgcaaaattctgcaggcattgacccaccataccctgcccgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcaccccactccaggctcatggtagtctttcccttgtagagcatgcgt------tcttgtcttcacatgagctgtttgtacccaggctgcctgaagtact-----------cccccagaattttcctggctactc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5914714 301 + 9440265 cattctgactcccatccaatt-------ctcctagtagccagaattacctttt-aaaaatgcatattgagtcatatgg-----ctcctccac-ataaaattctggtctgcaaaattctgcaggcattgacccaccataccctgcccgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcaccccactccaggctcatggtagtctttcccttgtagagcatgcgt------tcttgtcttcacatgagctgtttgtacccaggctgcctgaagtact-----------cccccagaattttcctggctactc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5654422 301 + 21915920 cattctgactcccatccaatt-------ctcctagtagccagaattacctttt-aaaaatgcgtattgagtcatatgg-----ctcctccac-ataaaattctggtctgcaaaattctgcaggcattgacccaccataccctgcctgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcaccccactccaggctcatggtagtctttcccttgtagagcatgcgt------tcttgtcttcacatgagctgtttgtacccaggttgcctgaagtact-----------cccccagaattttcctggctactc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12299076 299 - 90373283 cattctgactcccatccaatt-------ctcctagtagccagaattacctttt-aaaaatacatattgagtcatatgg-----ctcctccac-ataagattctggtctgcaaaat--tgcaggcattgacctaccatgccctgcctgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcaccccactccagactcatggtagtctttcccttgtagagcatgtgt------tcttgtcttcacatgtgctgcttgtacccaggctgcctgaagtact-----------cccccagaattttcctggctactt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 626755 301 + 1337817 cattctgactcccatccaatt-------ctcctagtagccagaattgcctttt-aaaaatgcgtattgagtcatatgg-----ctcctccac-ataaaattctggtctgcaaaattctgcaggcattgacccaccataccctgcctgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcaccccactccaggctcatggtagtcttttccttgtagagcatgcgt------tcttgtcttcacatgagctgtttgtacccaggttgcctgaagtact-----------cccccagaattttcctggctactc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 605980 301 - 3237654 cattctgactcccatccaatt-------ctcctagtagccagaattacctttt-aaaaacgcatattgagtcatatgg-----ctccttcac-ataaaattgtggtctgcaaaattctgcaggcattgatccaccatggcctgcctgttctgaccct--------------gcttacttctccattctcaccttttacaac------------ctc-ttcttgctcactccactccaggctcatggtagtctttcccttgtagagcatgcgt------tcttgtcttcacatgtgctgcttgtacccaggctgcctgaagtact-----------cccccagaattttcctggctactc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19136964 300 + 50472720 cattctcactcccatccaatt----------ctaatagtcagaattacctttt-aaaaatgcatattgagtcatatgg-----accctctgc-atgaaatcgtggtctgcaaaattctgcaggcattga-ccaccatgccctgtctgttctgaccctgt-----------ggcctacttctccattctcaccttttacaac------------ctc-ttcttgctcactgcactccaggctcatggtagtctttcccttctagagcatgcat------tattgttttcacatgcgctgtttgtacccaggctgcctgaagtact-----------cccccagaatttgcctggctactc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2485686 303 + 13128814 cattcttactcccatccaatt-------ctcctaatagtcagaattacctttt-aaaaatgcatattgagtcatatag-----cccctccgg-atgaaactgtggtctgcaaaattctgcaggcattga-ccaccatgccctgcctgttctgaccctgc-----------tgcatacttctccagtctcaccttttacaac------------ctc-ttcttgatcattccactcccggctcatggtagtctttcccttctagagcatgcat------tctggttttcacatgtgctgtttgtacccaggctgcctgaagtgct-----------cctccagaatttgcctggctatac i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7023218 302 - 14377064 c-ttcttagtcccatccaatt-------ctcctaatagtcagaattatctttt-aaaaatgtatattgagtcatatgg-----cccctccgc-atggaattgcggtctataaaattctgcaggcattga-ccaccatgccctgcctgttctgaccctgc-----------tgcctacttttccagtctcaccttttacaac------------ctc-ttcttgctcactccactccaggctcatggtagtctttcccttctagagcatgcat------tcttgttttcacgtgtgctgtttgtacccaagctgcctgaagtact-----------cccccaaaatttgcctggctactc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6070962 302 + 9889416 CATTCTTACTCCCATCCAATT-------CTCCTAATAGTCAGAATTACCTTTT-AAAAATGCAT-TTGAGTCATATGG-----CCCCTCCGC-ATGATATTGTGGTCTGCAAAATTCTGCAGGCATTGA-CCACCATGCCCTGCCTGTtctgaccctgc-----------tgcctacttctccagtctcaccttttacaat------------ctc-ttcttgctcactccactccaggcttatggtagtctttcccttctagagcatgtat------tcttgttttcacatgtgctgtttgtacccaggctgcctgaagtact-----------cccccagaattttcctggctactc i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16840956 321 + 47401472 cattctgactcccatttaatc-------cacctactagccagaattaccttat--aaaatgcgtatagagtcatattg-----ctcctctgt-gtacaattcgtatctgcaaagttctgtgggagttgactcaccatgccctgcctgctctgaccctgc-----------tgcctacctctgcagtctcacattgtataccttttatgcttacctt-tcctttctcactccactccagcctcatgttaatctttcccttctagaatatgcataacttgtttcatcttcacacatgctgtctatacccaggctgcctgaaacact-----------ccctcagaatttgcctggctactc i micMur3.chr31 C 0 I 256 s proCoq1.NW_012147997v1 1202207 321 - 2312742 cattctgactcccatttaatc-------gacctagtcgccagaattacctttt--aaaatgcatacagaatcatattg-----ctcccctgt-gtaaaattcttgtctgcaaagttctgtgggagctgactcaccatgtcctgcctgctctgaccttgc-----------tgcctacctctgcagtctcaccttttacaccttttatgcctacctt-tccttgctcactccactccagcctcatgctaatctttcccttccagagtatacataacttggctcatctgcacacatgctgtttatacacaggctgcctgaagcacg-----------ccctcagaatttgcctggctactc i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18323507 292 - 38779656 caatctgactccttgtcaatc-------catttagcggccagaattatgtttt--aaaatgcatatggagtgatactaagtattactcctgt-gtaagattatcgtctgcaaaattctgtgggaattgactccccaggccctgcttgctgtgatgctgt-----------tacccacctctccagtctcaccttgtatacc----------------tccttgctgcctcgcctgcagtctcatggtgatctttcc------------------cttgtctcatcttcacacacgcTTTTTGCACCCA-GCCATCTGAACCACT-----------CCCTCAGAATTTGCCTGACTACTT i otoGar3.GL873528 I 286 C 0 s canFam3.chr31 11438386 306 + 39895921 tagtctggctctcatccaatc-------tacatagaagccagaattacctttttaaaaatgcatattgattcacattg-----cttctgcgt-ataaaatcctgctctgtaaagttctgtggaagctgacccacc-taacctggctattctgattct--------------acctgcctctccagcctcatcttttgccac------------cttatccttgctcacaccactccaggcttatgacagtctttcttttctagaacatgcat-acttgtctcaccttca-atgagctgttttcacccaggctgcctgaagcatt-----------ccctcagaacttgcttggctactc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 633810 309 - 6883506 gattctggcatccatccaatccatttcccacatagtatccagaattaccttta-aaaaatacgtattgagtcatattg-----ctccccggt-gtaaaatcccgttc------------------------------gccctgcctattttgacaccgcctacctgacaccacctacctctccagtctcatcttttaccac-----------cctc-tccttgctcacttcactccaggttcat-acagcctttccattctggaatgtgctttacttgtcttgccttcaccagtgctgtttacacccaggctgcctgaaacacgtcccacccccatccccagaatttgccccgctgctc i dasNov3.JH568778 C 0 I 1 e mm10.chr16 75816612 4064 + 98207768 I a score=1286711.000000 s hg38.chr21_GL383578v2_alt 33877 107 + 63917 taagtccttat-tagttctctga-taaaagactgctcctcaacgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-cagtgttcatatct-- s panTro5.chr21 871386 107 + 33445071 taagtccttat-tagttctctga-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-cagtgttcatatct-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556035 107 + 46275980 taagtccttat-tagttctctga-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-cagtgttcatatct-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468133 107 - 13858734 tgagtccttat-tagttctctga-taaaagactcctcctcaatgtttccccaacttggccatctaaacga--ggttgatttgctctatgctttcata-gAGTGTTCATATCT-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590306 107 + 32716333 taagtccttat-tagttctctga-taaaggactgctcctcaatatttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-cagtgttcatatct-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152662381 107 - 185818997 taagtcctcat-tagttctctgt-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-ccgtgttcatatct-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470152 107 - 192294377 taagtcctcat-tagttctctgt-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-ccgtgttcatatct-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915015 107 + 9440265 taagtcctcat-tagttctctgt-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-ccgtgttcatatct-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5654723 107 + 21915920 taagtcctcat-tagttctctgt-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-cagtgttcatatct-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12299375 107 - 90373283 taagccctcat-tagttctctga-taaaagactgctcctcaatatttccccaacttagccatctaaacaa--ggttgatttgctctatgctttcata-cagtgttcatatct-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627056 107 + 1337817 taagtcctcat-tagttctctgt-taaaagactgctcctcaatgtttccccaacttagccatctaaacga--ggttgatttgctctatgctctcata-cagtgttcatatct-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606281 107 - 3237654 taagttctcat-tagttctctga-taaaagactgctcctccatgtttccccaactttaccatctaaacga--ggttgatttgctccatgctctcata-cagtgttcatatct-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137264 104 + 50472720 taagtcctcat-tagttctttga-gaaaaaactg---ctcagtgtttcccCAGTGTTGCCATCTAAACCA--GGTTTGTTTGCTCTGTGCTGTCATA-CAGTGTTCATATCT-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2485989 104 + 13128814 taagtcctcat-tagttctctga-taaaaAACCG---CTCAATGTTTCCCCAATGTTGCCATCTAAACCA--GGTTTGTTTGCTCTATGCTGTCATA-CAGTATTCATATTT-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7023520 105 - 14377064 taagtcctcat-tagttctctgattaaaaaactg---ctcaatgtttccccaatgttgccatctaaacca--ggtttgtttgctctatgctgtcata-cagtgttcatatct-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071264 104 + 9889416 taagtcctcat-tagttctctga-taaaaaactg---ctcaatgtttccccaatgttgccatctaaacca--ggtttgtttgctctgtgctgtcata-cagtgttcctatct-- i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1202528 109 - 2312742 ctactcctcatttaggtctctga-taaaatattacttctcaaagtttccccaactcactcatctgaacta--ggttcttttgttctatgctctcatagcagtgtttatatct-- i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18323799 111 - 38779656 CTGCTCCTCATGTAGGTCTCTGA-TAAAATATTACTTCTGAAAGTTTCTGCAACTCACCCATCCAAACTAGGGGGTTTTTTGTTCTGTGTTCTTATAGTAGTGTTTACATCT-- i otoGar3.GL873528 C 0 I 185 s canFam3.chr31 11438692 101 + 39895921 ctactcttcat-taggcctctgc-taaaacattgcttctcaatgcttcctcaactcatctctctaaaatA--AGTTCTTTTTCTC--TGCTCCCATAGGAGTGTTCT------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 634120 107 - 6883506 tacttcttctt-taagtctttgt-taaaattttttttctcaaagtttccccaact--accatctaatcta--ggttctttagttctattctatcataccaatgttc-tatctct i dasNov3.JH568778 I 1 C 0 e mm10.chr16 75816612 4064 + 98207768 I e micMur3.chr31 16841277 256 + 47401472 I a score=28196.000000 s hg38.chr21_GL383578v2_alt 33984 2 + 63917 at s panTro5.chr21 871493 2 + 33445071 at i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556142 2 + 46275980 at i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468240 2 - 13858734 AT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590413 2 + 32716333 at i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152662488 2 - 185818997 at i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470259 2 - 192294377 at i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915122 2 + 9440265 at i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5654830 2 + 21915920 at i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12299482 2 - 90373283 at i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627163 2 + 1337817 at i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606388 2 - 3237654 at i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137368 2 + 50472720 AT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2486093 2 + 13128814 AA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7023625 2 - 14377064 at i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071368 2 + 9889416 at i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1202637 2 - 2312742 at i proCoq1.NW_012147997v1 C 0 I 147 s otoGar3.GL873528 18324095 2 - 38779656 GT i otoGar3.GL873528 I 185 C 0 s canFam3.chr31 11438793 2 + 39895921 AT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 634227 2 - 6883506 at i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75816612 4064 + 98207768 I e micMur3.chr31 16841277 256 + 47401472 I a score=5599509.000000 s hg38.chr21_GL383578v2_alt 33986 515 + 63917 aTATTTGT-A---------TC--TCTATGTCATAAATTCTGTTG-TT---------------------------------------------TTATCTACACAGGCAGAT-TTTTGT--------CTTGCCAA-----------------------------------------------TTAGTATGCAGGA--AGAC-------------------------ATTTAATGATTTTTTCACTGT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------ATT--AATAA----------------------------------------------------------------------TTTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAAGC--CAACGTAGCATAGTATGCTAACATTTTATTCTAAAATCCTGGTTTGCAGTGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATACCTTGACTCCACCACCAATCAGGATCTAGCCAATACAGCAGGTGCAGGACTTCCCTTCCGAAAT------TACCACTCCCAACTCCCTGGGGCAGTAACACTTAACTTCCTCCGTCCAAAATGCATAGCAATTCTACCTGGTCCAGCTTCTAGCTACAAACCCACACCCATTA-----CAACTTGATCTACACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GAAT s panTro5.chr21 871495 515 + 33445071 aTATTTGT-A---------TC--TCTATGTCATAAATTCTGTTG-TT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCCAA-----------------------------------------------TTAGTATGCAGGA--AGAC-------------------------ATTTAATGATTTTTTCACTGT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------ATT--AATAA----------------------------------------------------------------------TTTTTGGAGGTGCTTTTTAAGAGTTGGTCACCAAAAGAGGC--CAATGTAGCATAGTATGCTAACATTTTATTCTAAAATCCTGGTTTGCAGTGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATACCTTGACTCCACCACCAATCAGGATCTAGCCAATACAGCAGGTGCAGGACTTCCCTTCCGAAAT------TACCACTCCCAACTCCCTGGGGCAGTAACACTTAACTTCCTCCGTCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCTACAAACCCACACCCATTA-----CAACTTGATTGACACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GAAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556144 515 + 46275980 aTATTTGT-A---------TC--TCTATGTCATAAATTCTGTTG-TT---------------------------------------------TTATCTACATAGGTAGAT-TTTTGT--------CTTGCCAA-----------------------------------------------TTAGTATGCAGGA--AGAC-------------------------ATTTAATGATTTTTTCACTGT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------ATT--AATAA----------------------------------------------------------------------TTTTTGGAGGTGCTTTTTAAGAGTTGGTCACCAAAAGAGGC--CAACGTAGCATAGTATGCTAACATTTTATTCTAAAATCCTGGTTTGCAGTGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATACCTTGACTCCACCACCAATCAGGATCTAGCCAATACAGCAGGTGCAGGACTTCCCTTCTGAAAT------TACCACTCCCAACTCCCTGGGGCAGTAACACTTAACTTCCTCCGTCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCTACAAACCCACACCCATTA-----CAACTTGATCGACACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GAAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468242 515 - 13858734 ATATTTGT-A---------TC--TCTATGTCATAAATTCTGTTG-TT---------------------------------------------TTATCTACCTAGGCAGAT-TTTTGT--------CTTGCCAA-----------------------------------------------TTAGTATGCAGGA--AGAC-------------------------ATTTAATGATTTTTTCACTGT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------ATT--GATAA----------------------------------------------------------------------TTTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAATGTAGCATAGTATGCTAACATTTTATTCTAAAATCCTGGTTTGCAGTGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATACCTTGACTCCACCACCAATCAGGATCTAGCCAATACAGCAGGTGCAGGACTTCCCTTCCGAAAT------TACCACTCCCAACTCCCTGGGGCAGTAACACTTAACTTCCTCCGTCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCTACAAACCCACACCCATTA-----CAACTTGATCTACACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GAAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590415 510 + 32716333 aTATTTGT-A---------TC--TCTATGTCATAAGTTCTGTTG-TT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCCGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATGATTTTTTCACCGT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------ATT--AATAA----------------------------------------------------------------------TTTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAACGTAGCATAGTATGCTAACATTTTATTCTAAAATCCTGGTTTGCAATGTTCTGCGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATAC-----CACCACCACCAATCAGGATCTAGCCAATACAGCAGGTGCAGGACTTCCCTCCCGAAAT------TACCACTCCCAACTCCCTGGGGCAGTAACACTTAACTTCCTCCATCCAAAATGCATAGCAATTCTATCTGGTTCAGCTTCTAGCCACAAACCCATACCCATTA-----CAACTTGATCTACACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GAAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152662490 515 - 185818997 atatttat-a---------cc--tctatgtcataacttctgttg-tT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATAATTTTTTCACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------GTT--AATAA----------------------------------------------------------------------ATTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAACATAGCATAGTATGCTAACATTTTATTCTAAAATCGTGGTTTGCAATGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATGCCTTGACTCCACCACCAATCAGGATCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCAACTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAATTGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACTTGATCTATACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GATT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470261 515 - 192294377 atatttat-a---------cc--tctatgtcataacttctgttg-tT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATAATTTTTTCACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------GTT--AATAA----------------------------------------------------------------------ATTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAACATAGCATAGTATGCTAACATTTTATTCTAAAATCGTGGTTTGCAATGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATGCCTTGACTCCACCACCAATCAGGATCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCAACTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAATTGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACTTGATCTATACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GATT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915124 516 + 9440265 atatttat-a---------cc--tctatgtcataacttctgttgttt---------------------------------------------ttatctACATAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATAATTTTTTCACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------GTT--AATAA----------------------------------------------------------------------ATTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAACATAGCATAGTATGCTAACATTTTATTCTAAAATCGTGGTTTGCAATGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCACCCATGCCTTGACTCCACCACCAATCAGGATCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCAACTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAATTGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACTTGATCTATACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GATT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5654832 515 + 21915920 atatttat-a---------cc--tctatgtcataacttctgttg-tT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATAATTTTTTCACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------GTT--AATAA----------------------------------------------------------------------ATTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAACATGGCATAGTATGCTAACATTTTATTCTAAAATCGTGGTTTGCAATGTTCTGTGGGAGCTTTTTCTGAAACCTC-TACCTTTCCCTACCCAAGTCTTAAGGCCACCCATGCCTTGACTCCACCACCAATCAGGATCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCAGCTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACTTGATCTATACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GATT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12299484 515 - 90373283 atatttat-a---------cc--tctatgtcataacttctgttg-tT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATAATTTTTTCACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------GTT--AATAA----------------------------------------------------------------------ATTTTGGAGGTGCTTTTTCAGAGTTGGTGACCAAAAGAGGC--CAACATGGCATAGTATGCTAACATTTTATTCTAAAATCGTGGTTTGCAATGTTCTGTGGGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAATTCTTAAGGCCACCCATGCCTTGACTCCACCACCAATCAGGATCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCAACTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACCTGATCTACACAAAATAATCCAGCCACCAAAAACTGTTTATAAAGCTGTG--GATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627165 515 + 1337817 atatttat-a---------cc--tctatgtcataacttctgttg-tT---------------------------------------------TTATCTACATAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAATAATTTTTTCACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------GTT--AATAA----------------------------------------------------------------------ATTTTGGAGGTGCTTTTTAAGAGTTGGTGACCAAAAGAGGC--CAACATGGCATAGTATGCTAACATTTTATTCTAAAATTGTGGTTTGCAATGTTCTGTGGGAGCTTTTTCTGAAACCTC-TACCTTTCCCTACCCAAGTCTTAAGGCCACCCATGCCTTGACTCCACCACCAATCAGGATCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCAACTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACTTGATCTATACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--Gatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606390 515 - 3237654 atatttat-a---------cc--tctatgtcatagcttctgttA-CT---------------------------------------------TTATCTACATAGGCAGGT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTAGGA--AGAC-------------------------ATTTAGTAGTTTTTTTACTAT------------------------------------------------AAGTCAAAAATCCTTTA---AGATTTC-----------------------------------------------ATT--AATAA----------------------------------------------------------------------TTTTTGGAGGTGCTTTCTAAGAGTTGGTGACCAAAAGAGGC--CAATGTAGCATAGTATGCTAACATTTTATTCTAAAATCGTGGTTTGCAATATTCTGTGAGAGCTTTTTCTGAAACCTC-TGCCTTTCCCTATCCAAGTCGTAAGGCCACCCATACCTTGACTCCACCACCAATCAGGAGCTAGCTAATACAGCAGGTGCAGGATTTCCCTTCTGGAAT------TACCACTCCCGACTCCCTGGGGCAGTAATACTTAACTTCCTCCATCCAAAATGCATAGCAATTCTATCTGGTCCAGCTTCTAGCCACAAACCCACACCCATTA-----CAACCTGATCTACACAAAACAATCCAGCCACCAAAAACTGTTTAAAAAGCTGTG--GATT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137370 484 + 50472720 ATATCTGT-A---------TC--TCTGTGTCGTAGCTTCTGTGG-TT---------------------------------------------TTAGCTACACAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATGTTGGT--A-------------------------------------------CACGAT------------------------------------------------AAGTCAAAA---------------CTC-----------------------------------------------ATT--AATAA---------------------------------------------------------------------TTTTTTGGAGGTGCTTTTAAAGAGTTGGTGGCCCAAAAAGGC--CAATGTAGCATAGTATGCTAACATTTGATTCTAAAATCCAGGTATGCAGTGTTCGGTGGGAATTTTTCCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAAGCCCCCCACACCTTGACTCCTCCACCAATCAGGATCCAGCTAGTACAGCAGGTGCAGGACTTCCCTCCTGAAAT------TCCCACTCCCAACTCCCTGGGGCAGTAACATTTAACTTCCTCCATTCAAAATGCATAGCAATTCCATCTGGTCCAGCTTCTACCCACAAACCTACTCCCATTA-----CAACTTGATTTACACAAAACAATCCAGCCACCAAAAACTGTTAAAAAAGCTGTG--GA-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2486095 495 + 13128814 ATATCTGT-A---------TC--TCTATGTCATAGCTTGTGTTG-TT---------------------------------------------TTAGCTACACAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TCAGTATGCTGGT--AGAC-------------------------ATTTCATAA-TTGTTCACTAT------------------------------------------------AAGTCAAAA---------------CTC-----------------------------------------------ATT--AATAA---------------------------------------------------------------------TTTTTTGGAGGTGCTTTTAAAGAGTTGGTGGCCCAAAGAGGC--CAACGTAGCATAGTATGCTAACATTTGATTCTAAAATCTAGGTATGCAATGTTCTGTGGGAAATTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCCTCCACACCTTGACTCCACCACCAATCAGGATCCAGCTAATACAGCAGGTGCAGGACTTCCCTCCTGAAAT------TCCCACTCCCAACTTCCTGGGGCAGTGACATTTAAATTCCTCCATTCAAAATGCAGAGCAATTCCAT--------GCTTCTACCCACAAACCTACTCCCATTA-----CAACTTGATCTACACAAAACAATCCAGCCACCAAAAACTGTTCAAAAAGCTCTG--GAAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7023627 503 - 14377064 atatctgt-a---------tc--tctatgtcatagcttctgttg-tT---------------------------------------------TTAGCTACACAGGCAGAT-TTTTGT--------CTTGCTGA-----------------------------------------------TTAGTATCTTGGT--AGAC-------------------------ATTTCATAA-TTGTTCACTAT------------------------------------------------AAGTCAAAA---------------CTC-----------------------------------------------ATT--AATAA---------------------------------------------------------------------TTTTTTGGAGGTGCTTTTAAAGAGTTGGTGGCCCAAAGAGGC--CAACGTAGCATAGTATGCTAATATTTGATTCTAAAATCCAGGTATGCAATGTTCTGTGGGAACTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCCTCCACACCTTGACTCCACCACCAATCAGGATCCAGCTAATACAGCAGGTGTAGGACTTCCCTCCTGTAAT------TCCCACTCCCAATTCCCTGGGGCAGTAACATTTAACTTCCTCCTTTCAAAATGCATAGCAATTCCATCTGGTCAAGCTTCTACCCACAAACCTACTCCCATTA-----CAACTTGATCTACACAAAACAATCCAGCCACCAAAAACTGTTCAAAAAGCTGTG--GAAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071370 505 + 9889416 aTATCTGT-A---------TC--TCTATGTCGTAGTTTCTGTTG-TT---------------------------------------------TTAGCTACACAGGCATAT-TTTTAT--------CTTGCCGA-----------------------------------------------TTAGTATGTTGGT--AGAC-------------------------ATTTCATAA-TTTTTTCCTAT------------------------------------------------AAGTCAAAA---------------CTC-----------------------------------------------AT-----TAA---------------------------------------------------------------------TTTTTTGGAGGTGCTTTTAAAGAGTTGGTGGCCCAAAGAGGC--CAACGTAGCATAGTATGCTAACATTTGATTCTAAAATCCAGGTATGCAGTGTTCTGTGGGAACTTTTTCTGAAACCTC-TGCCTTTCCCTACCCAAGTCTTAAGGCCCTCCACACGTTGACTCCAACACCAGTCAGGATCCAGCTAATACAGCAGGTGCAGGACTTCCCTCCTGAAAT------TCCCACTCCCAACTCCCTGGGGCAGTAACATTTAACTTCCTCCATTCAAAATGCATAGTAATTCCATCTGGTCCAGCTTCTACCCACAAACCTACTCCCATTACAATTCAACTTGATCTACATGAAACAATCCAGCCACCAAAAACTGTTCAAAAAGCTGTG--GAAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18324097 487 - 38779656 ATATCTGT-ATTTATATTTTT--TCCATGTCATA--CTCTGTT--TT---------------------------------------------GTATCAACATGAGTAGAT-TTTTGTCTCAGGGCCTTGTTGA-----------------------------------------------TTAGTATATAGGGTTGGAC-------------------------TTCTCATAA-TTTTTCATTGT------------------------------------------------AAATTCAAAATAACATA---ATGTTTC-----------------------------------------------ATTAAAATTA----------------------------------------------------------------------TTTTTGGAGGCTCTTT---AAATTTGAAGGCCAAAAGAAGTAACAATGTAGCATAATACTCTAACATTTTGTCCTGAAATCCTGGCCTGAAGAGTTGTGTGGGAACATTTCCTGAAACATCTTGATATTCCCTAT-CAATACTTAAAG--------GCTTTGGATCCACCACCA----------------CCCAGCAGGTATGGGTCATCTCTCTTAGAGT------TCTTGCTCTCACCTGCCTGGGGCAATAACACTT-ATTTCCTCCATTCAAAATGCATAGCAACTCTCACT------------------AAACCTTTACTCATTA-----GACTTTGATCTAGCCAAGACAATCCAGCCACT-CCAACTATTTAAAAAGCTACA--GGAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11438795 729 + 39895921 GTATCTAT-A---------TCTATCTATGTCATATCTACTGTCT-TC---------------------------------------------TCATCTACCTGGATAGAT-TTTTTTCTCAGACCCTTGCTGATGTAGGCCTAGACCCATCATAGTTTTACATTGTAAGCCCAGAATCACTTGACATGTATTA--AAACAAAGCAAAACtttttttaaaaaattatttatttatttttttattatttattttggggagagggcgtgcacccatgtgagtggggggaggggcagaaggaaagaagtcttcaatcagacttcccatttagtgaggagccctacctggggctcagtcccaccactcatgagat--aatgacctgagccaaaattgagagtcagacacttaaccaactgagccacccaggcaccccAAAATGAAGCAAAACGTTTTAGAGGCGCTTCTTAAGA-TTGGAGGCCAAAAAAGGA-ACAACATACCATAGTTCCATAACATTGTATTCTAAAGTCCTGGTCTGCAAAATTCTGTGGGAATTTTTCATGAAACCTC-TGATTGTCCCT-------TCTTA------------CCTTGACTTCACCACCAAGTGAGATCCAAACAATA---TGGGTGCA-----------CTAGAAT------TCCCACCACCAATTCCCTGAGGCAATAACGCTTATATTCCCCTTTTAAAA----AATGCAGTTCTTTCTGGTCTAGGTTCTACCCACAAATCTCCACCCACTA-----CACCTTGGTCTACACAAGACAATCTAGCCACT-AGAATGGTTTAAAAAGCATTGGTGGAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 634229 564 - 6883506 ctatctgtca---------tc--tctagatcatcatctctatta-tttatgtctgtctATATCATCTATATCTATATCATATCCATGTGCCCTTACCTCTACAAGTATAGATTTTGTCACAGGAACTTACTGA-----------------------------------------------TTATTATGGAGGC-TAAAT-------------------------CTGTCATAA-TTTTTCACTAT------------------------------------------------AAATCCAAAATCACTTA---ACATCTT-----------------------------------------------ATA--AAAAT----------------------------------------------------------------------ATTTTGGAAGCATTTCTTAAGA-TTGGAGGCCAAAAGAAGA-ACAATCTAGCAGAGTGCCATAAAATTTTCTCCTAAAAT--TGCTATTCCAAATT--------ATTTTCCCTGAAACATC-TGATTGTCCATGCCCAAAACTTAATCCCCTCTGCACTTTGACTCCATAACCAAAGAGGACCCTGCCAACACTACAGATGTGCTACTTTCTACTTGGAACACCCTACCCCATCCCCAGATTCCTGGGGCAATCATTCAT-ATTTCCCCCATTCAAAATGTGGAGCAATTCTCTCTGGTCCAGCTTCTTTCTACAAACCTCCACCCATTA-----GACCTTATACTATACAAGGCTTTCCAGTCACC-AGAACTGTTTAAAAAGCTGTG--AAgt i dasNov3.JH568778 C 0 I 877 e mm10.chr16 75816612 4064 + 98207768 I e proCoq1.NW_012147997v1 1202639 147 - 2312742 I e micMur3.chr31 16841277 256 + 47401472 I a score=143013.000000 s hg38.chr21_GL383578v2_alt 34501 12 + 63917 ATGTGTAACTTA s panTro5.chr21 872010 12 + 33445071 ATGTGTAACTTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556659 12 + 46275980 ATGTGTAACTTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468757 12 - 13858734 ATATGTAACTTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590925 12 + 32716333 ATGTGTAACTTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663005 12 - 185818997 ATGTGTAACTTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470776 12 - 192294377 ATGTGTAACTTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915640 12 + 9440265 ATGTGTAACTTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655347 12 + 21915920 ATGTGTAACTTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12299999 12 - 90373283 ATGTGTAACTTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627680 12 + 1337817 atgtgtaactta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606905 12 - 3237654 ATGTGTAACTTA i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2486590 12 + 13128814 ATGTGTAACTTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024130 12 - 14377064 ATGTGTAACTTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071875 12 + 9889416 ATGTGTAACTTA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18324584 12 - 38779656 ATGTGTAACTCA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11439524 12 + 39895921 ATATGTCACTTA i canFam3.chr31 C 0 I 982 e mm10.chr16 75816612 4064 + 98207768 I e proCoq1.NW_012147997v1 1202639 147 - 2312742 I e micMur3.chr31 16841277 256 + 47401472 I e calJac3.chr21 19137854 0 + 50472720 C e dasNov3.JH568778 634793 877 - 6883506 I a score=359374.000000 s hg38.chr21_GL383578v2_alt 34513 52 + 63917 GGATC-TATTTTCTatcagtatatcaaagagatatctgcactccta----tgttatg s panTro5.chr21 872022 52 + 33445071 GGATC-TATTTTCTatcagtatatcaaagagatatctgcactccta----tgttatg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556671 52 + 46275980 GGATC-TATTTTCTatcagtatatcaaagagatatctgcactccta----tgttatg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468769 52 - 13858734 GGATC-TATTTTCTatcagtatatcaaagagatatctgcactccta----tgttatg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590937 52 + 32716333 GGATC-TATTTTCTatcagtatatcaaagatatatctgcactccta----tgttatg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663017 50 - 185818997 GGATC-TATTTTCTATC--tatatcaaagagatatctgtactccta----tattatg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470788 50 - 192294377 GGATC-TATTTTCTATC--TATATCAAAGAGATatctgtactccta----tattatg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915652 50 + 9440265 GGATC-TATTTTCTATC--tatatcaaagagatatctgtactccta----tattatg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655359 50 + 21915920 GGATC-TATTTTCTATC--tatatcaaagagatatctgtactccta----tattatg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300011 52 - 90373283 GGATC-TATTTTCTATCTGTGTATCTAAGAGATatctgtactccta----tattatg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627692 50 + 1337817 ggatc-tattttctatc--tatatcaaagagatatttgtactccta----tattatg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606917 50 - 3237654 GGATC-TGTTTTCTATCTGTATATCAAAGAG--Atctgtactccta----cattatg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137854 26 + 50472720 -------------------------------ATACCTGCGCTCCTATCTCTGTTATG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2486602 57 + 13128814 GGATCTTTTTTTATattagtatataaaagagatacctgcactcctatggctgttATG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024142 56 - 14377064 GGATC-TATTTTATattactatataaaagagatacctgtactcctatgtctgttATG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071887 56 + 9889416 GGATC-TGTTTTATGttagtatataaaagagttacctgcactcctacgtctgttATG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18324596 19 - 38779656 GAAGT-TATTTAC-------------------------------------AGTTAGG i otoGar3.GL873528 C 0 C 0 e mm10.chr16 75816612 4064 + 98207768 I e proCoq1.NW_012147997v1 1202639 147 - 2312742 I e micMur3.chr31 16841277 256 + 47401472 I e dasNov3.JH568778 634793 877 - 6883506 I e canFam3.chr31 11439536 982 + 39895921 I a score=97844.000000 s hg38.chr21_GL383578v2_alt 34565 8 + 63917 ttTATTTC s panTro5.chr21 872074 8 + 33445071 ttTATTTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556723 8 + 46275980 ttTATTTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468821 8 - 13858734 ttTATTTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590989 8 + 32716333 ttTATTTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663067 8 - 185818997 ttTACTTC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470838 8 - 192294377 tttacttc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915702 8 + 9440265 ttTACTTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655409 8 + 21915920 ttTACTTC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300063 8 - 90373283 tttacttc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627742 8 + 1337817 tttacttc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606967 8 - 3237654 tttacttc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137880 8 + 50472720 TTTATTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2486659 8 + 13128814 tttattta i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024198 8 - 14377064 TTTATTTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071943 8 + 9889416 TTTATTTC i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18324615 8 - 38779656 TTTATTTC i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 635670 8 - 6883506 TTTATTCC i dasNov3.JH568778 I 877 C 0 e mm10.chr16 75816612 4064 + 98207768 I e proCoq1.NW_012147997v1 1202639 147 - 2312742 I e micMur3.chr31 16841277 256 + 47401472 I e canFam3.chr31 11439536 982 + 39895921 I a score=465322.000000 s hg38.chr21_GL383578v2_alt 34573 47 + 63917 TGTGA---TCAATTATTCAATGAACGtcttctcactagactaaactctat s panTro5.chr21 872082 47 + 33445071 TGTGA---TCAATTATTCAATGAACGtcttctcactagactaaactctat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556731 47 + 46275980 TGTGA---TCAATTATTCAATGAACGtcttctcactagactaaactctat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468829 47 - 13858734 TGTGA---TCAATTATTCAATGAACAtcttctcactagactaaactctat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1590997 47 + 32716333 tgtga---tcaattatttaatgaacatcttctcactagactaaactctat i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663075 42 - 185818997 TGTGA---TCAATTATGTATTGAACATCTTCTC-----ACtaaactctat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470846 47 - 192294377 tgtga---tcaattatgtattgaacatcttctcactagactaaactctat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915710 47 + 9440265 TGTGA---TCAAttatgtattgaacatcttctcactagactaaactctat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655417 47 + 21915920 TGTGA---TCAAttatgtattgaacatcttctcactagactaaactctgt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300071 47 - 90373283 tgtga---tcaattatttaatgaacatcttctcactagactaaactctat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627750 47 + 1337817 tgtga---tcaattatgtattgaacatcttctcactagactaaactctgt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 606975 47 - 3237654 tgtga---tcagttatttaatgaacatcttctcactagactaaactctgt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137888 47 + 50472720 TGTGA---TCAAttgtttaatgcccatattctcagtagagtaaactttat i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2486667 42 + 13128814 tgtga---tcaattgtttaatgcccatcttctc-----actaaactctat i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024206 47 - 14377064 TGTGA---TCAAttgtttaatgtccatcttctcactagactaaattctat i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071951 31 + 9889416 TGTGA---TCAATTGTTTaatgcc----------------taaactctat i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18324623 50 - 38779656 CATGACTTTTTGttgtttaatgcctgtcttctgagtagaccaaactctgt i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11440518 47 + 39895921 tgTGA---ttgtttttttaatgcctgtctcttcactagactaagctccat i canFam3.chr31 I 982 C 0 s dasNov3.JH568778 635678 47 - 6883506 TGAGA---TTAAGGTtttaatgcctagctcccctctggattagggtccat i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75816612 4064 + 98207768 I e proCoq1.NW_012147997v1 1202639 147 - 2312742 I e micMur3.chr31 16841277 256 + 47401472 I a score=2348007.000000 s hg38.chr21_GL383578v2_alt 34620 157 + 63917 aatagcagaaaacattattatcatgtttgtagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcagtacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggatccagaacttaaatcc s panTro5.chr21 872129 157 + 33445071 aatagcagaaaacattattatcatgtttgtagtt-atacctcctaaccctggcacagtgcctggatcatgaaaagcaatcagtacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556778 157 + 46275980 aatagcagaaaacattattatcatgtttgtagtt-atacctcctaaccctggcacagtgcctggatcatgaaaagcaatcagtacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 468876 157 - 13858734 aatagcagaaaacattattatcatgtttgtagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcagtacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591044 157 + 32716333 aatagcagaaaacattattatcatgtttgtagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttgcacaaaatcatacagcattaagtattggacccagaacttaaatcc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663117 157 - 185818997 aatagcagaaaagattgttatcatgtttatagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159470893 157 - 192294377 aatagcagaaaacattgttatcatgtttatagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915757 157 + 9440265 aatagcagaaaacattgttatcatgtttatagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttcttgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655464 157 + 21915920 aatagcagaaaacattgttatcatgtttatagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300118 157 - 90373283 aataacagaaaacattattatcacgtttgtagtt-atagctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627797 157 + 1337817 aatagcagaaaacattgttatcatgtttatagtt-atacctcctaaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttgcacaaaatcacacagcattaagtgttggacccagaacttaaatcc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607022 157 - 3237654 aatagcagaaaacattattatcatgtttgtagtt-atacctcctcaccctagcacagtgcctggatcatgaaaagcaatcaatacacagttctcgaatgaat--gCaataacttacacaaaatcacacagcattgagtgttggacccacaacttaaatcc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19137935 157 + 50472720 aataacaggaaacattattatcacgtttgtagtt-gtaactcctaaccatagcacagtacctggatcatgaaaagcaaaaaatacatagttcttgaatgaat--gCaataacttgcacaaaattacacagcattaagtgttagagccagaacttaaatcc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2486709 157 + 13128814 aatagcagaaaacattattatcacatttgtagtt-ataactcctaagcctagcacagtgcctggagtatgaaaagcaatcaatacatagttcttgaatgaat--gCaataacttgcacaaaattacacagcattaagtgttaaagccagaacttaaatcc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024253 157 - 14377064 aatatcagaaaacattatcatcacgtttgtagtt-ataactcctaaccctagcacagtgcctggatcattaaaagcaatcaatacatagttcttgaatgaat--gCaataacttgcacaaaattacacaacattaattgttagaggcagaacttaaatcc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6071982 157 + 9889416 aatagcagaaagcattattatcacgttcgtagtt-ataactcttaaccctagcacagtgcctggatcatgaaaagcaagcaatacatagttattgaatgaat--gCaataacttgcacaaaattacacagcattaagtgttacagccagaacttaaatcc i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16841533 158 + 47401472 AATggcagaaaccattactattatgttcatagtt-atacctcctaactctagcatagtgcgtggctcatcaaaaacaataaataaataggttttgaatgaat-ggaattaattttcacaagatcacaaaacagtaagtggtggaaccaaaacttgaatcc i micMur3.chr31 I 256 C 0 s proCoq1.NW_012147997v1 1202786 159 - 2312742 aatggcagaaaccattactattgtgtttgtagta-atacctcctaagcctagcatagtgcctggctcatcaaaaacaataaataaatagtttttgaatgaatgGGaattaactttaacaagatcacaaagcagtaagtggtggaatcaaaacttgaatcc i proCoq1.NW_012147997v1 I 147 C 0 s otoGar3.GL873528 18324673 157 - 38779656 aatggctaagtctattactattgtgttcatagtt-aca-ttcctaaccctagcaaaatgtctgggtcatggaaaacaataaattaacatttttttaatgaat-gGTATtaactttcacaagatcacaaagcaataagtggtggaaccacaacttgaatcc i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11440565 158 + 39895921 aatagcagagaccatgactattatagtcatagttaacacattctgcacctagcacagtgcttggctcatgaaaatcaataaataaatagttcttgaatggat--tgaacaacttgcacgggatcacacagtagcaagtagtggagccaatatttgattcc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 635725 156 - 6883506 gatagcagggaccattcctttcatgtccgtagtt-acctcccctgcttctagcacaat-cctggctcataaaaatcaataaataaatagttctcaaatgagt--gaactaactttcataagatcacacaacagtaagcagtggaactggaacttgaaccc i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75816612 4064 + 98207768 I a score=598984.000000 s hg38.chr21_GL383578v2_alt 34777 47 + 63917 agatatgcatctgattccaaaggccgtg------------------ccc-gttTAAA-AAGAATACC-- s panTro5.chr21 872286 47 + 33445071 agatatgcatctgattccaaaggccatg------------------tcc-gttTAAA-AAGAATACC-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556935 47 + 46275980 agatatgcatctgattccaaaggccatg------------------ccc-gttTAAA-AAGAATACC-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469033 47 - 13858734 agatatgcatctgattccaaaggccatg------------------tcc-attTAAA-AAGAATACC-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591201 47 + 32716333 agatatgcatcggattccaaaggctatg------------------ctc-gttTAAA-AAGAATACC-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663274 47 - 185818997 agatttgcatctgattccaaaggccacg------------------ctt-gttTAAA-AGCAATACC-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471050 47 - 192294377 agatttgcatctgattccaaaggccacg------------------ctt-gttTAAA-AGCAATACC-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915914 47 + 9440265 agatttgcatctgattccaaaggccacg------------------ctt-gttTAAA-AGCAATACC-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655621 47 + 21915920 agatttgcatctgattccaaaggccatg------------------ctt-gttTAAA-AGCAATACC-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300275 47 - 90373283 agatttgcatctgattccaaaggccatg------------------ctt-gttTAAA-AAGAATACC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 627954 47 + 1337817 agatttgcatctgattccaaaggccatg------------------ctt-gttTAAA-AGCAATACC-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607179 47 - 3237654 agatttgcatctgattccaaaggccatg------------------ctt-gttTGAA-AACAATACC-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138092 47 + 50472720 agatatgtgtctaattccagaggccatg------------------ctc-tttttaA-AAAAATACC-- i calJac3.chr21 C 0 I 247 s saiBol1.JH378168 2486866 48 + 13128814 agatatgtgtctaattccagaggccatg------------------ctcttTTTTAA-AAAAATACC-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024410 47 - 14377064 agatatgtatctaattctagaggtcatg------------------ctc-ttTTTAA-AAAAACATC-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072139 47 + 9889416 agatatgtgtttaattccagaggccatg------------------ctc-tttttaA-AAAAATATC-- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16841691 46 + 47401472 agatacatgtctgattccaaaggccgtg------------------ctt-tttGTTA--AGAATGCA-- i micMur3.chr31 C 0 I 1 s proCoq1.NW_012147997v1 1202945 47 - 2312742 agatacgtgtctgattccaaaggcggtg------------------ctt-tttTAAA-TAGAATGCA-- i proCoq1.NW_012147997v1 C 0 I 1 s otoGar3.GL873528 18324830 47 - 38779656 aggtatgtgtctgattccaaaggccat-------------------ctt-tttgtgaccagaatgcc-- i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75820676 47 + 98207768 agATATGTACCTGATTTAAAAGATTAGG------------------ATT-TTTTTTA-AAAAATAAT-- i mm10.chr16 I 4064 I 4 s canFam3.chr31 11440723 65 + 39895921 agatatgtgcctgattccaaaggtcatggtttttGTTGTTTGGGTTTTT-TTTTAAA-GTCAATGCT-- i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 635881 47 - 6883506 agatatgcatctggttctaaaggccata------------------ctt-ttt--aa-aacaatgctac i dasNov3.JH568778 C 0 C 0 a score=1139340.000000 s hg38.chr21_GL383578v2_alt 34824 93 + 63917 AAAAAGCCACAGCTGACGTAATTACTATGAAATGTGTATACAAACGCGTATGTGGCCTTACACAGATTTTATTTGTGTTTGTGAATTAAAGGT s panTro5.chr21 872333 93 + 33445071 AAAAAGCCACAGCTGATGAAATTACTATGAAATGTGTATACAAACGGGTATGTGGCCTTATACAGATTTTATTTGTGTTTGTGAATTAAAGGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14556982 93 + 46275980 AAAAAGCCACAGCTGATGTAATTACTATGAAATGTGTATACAAACAGGTATGTGGCCTTACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469080 93 - 13858734 AAAAAGCCACAGCTGACGTAATTATTATGAAATGTGTATACAAACAGGTATGTGGCCTTACACAAATTTTATTTGTGTTTGTGAATTAAAGGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591248 93 + 32716333 AAAAAGCCACAGCTGATGTAATTACTATGAAATGTGTATACAAACGGGTATATGGCCTTACACAGATTTTATTTGTGTTTATGAATTAAAGGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663321 91 - 185818997 AAAAAGCCACAGCTGATGTGATTACTATGAAATGTGTATACAAATGGGTATATGGCC--ACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471097 91 - 192294377 AAAAAGCCACAGCTGATGTGATTACTATGAAATGTGTATACAAATGGGTATATGGCC--ACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5915961 91 + 9440265 AAAAAGCCACAGCTGATGTGATTACTATGAAATGTGTATACAAATGGGTATATGGCC--ACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655668 91 + 21915920 AAAAAGCCACAGCTGATGTGATTACTATGAAATGTGTATACAAATGGGTATATGGCC--ACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300322 93 - 90373283 AAAAAGCCACAGCTGATGTAATTACTATGAAATGTGTATACAAAAGGGTATATGGCCTTACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628001 91 + 1337817 AAAAAGCCACAGCTGATATGATTACTATGAAATGTGTATACAAATGGGTATATGGCC--ACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607226 93 - 3237654 AAAAAGCCACAGCTGATGTAATTACTATGAAATGTGTATATAAACGGGTATATGGCCTTACACAGATTTTATTTGTGTTTGTGAATTAAAGGT i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2486914 93 + 13128814 AAAAAGCCATGGCTGATGCAATTTCTGTGAAATGTGAATACAGATGGGTATATGCTCTTACATAGATTTTATTTGTGTTTGTGAATTAAAGGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024457 93 - 14377064 AAAAAGCCATAGCTGATGCAATTACTGTGAAATGTGAATGCAGATGTTTATGTGGTCTTACATAGATTTTATTTGTGTTTGTGAATTAAAGGT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072186 93 + 9889416 AAAAAGCCATGGCTGATGCAATTACTGTGAAATGTGAATACAGATGGGTATATGGTCTTACATAGATTTTATTTGTGTATGTGAATTAAAGGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16841738 86 + 47401472 AAAAAGCCAAGGCTGATGCAATTATTGTGGAATGTGTATGCAAATA-------GGTCTTACACATACCTCATTTGTCTTTGTGAATCAAGGAT i micMur3.chr31 I 1 C 0 s proCoq1.NW_012147997v1 1202993 86 - 2312742 AAAAAAGCCAGGCTGATGCAATTACTGTGGAATGTGCATGCAAATG-------GGCCTTACACATACCTCATTTGTCTTTGTGATTCAAGGAT i proCoq1.NW_012147997v1 I 1 C 0 s otoGar3.GL873528 18324878 93 - 38779656 AAAAATCCGCAGCTGATGCAATTATTGTGGAATGTGTGTGCAGATAGTCACATGGGCTTACGCATAGCTCATTCGTCTTTCTGAATCAAGGGC i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75820727 84 + 98207768 TGACATCCCTGTCTGTTGTAGTTGTTTTAGAATATG-ATGCAGATAACT-TAAAGCCTTAAGCATGGTTTTGTTTTGT-TGTGAGAT------ i mm10.chr16 I 4 C 0 s canFam3.chr31 11440789 89 + 39895921 TAAAAGCCATGGTTGATGCAAT---TGTGCAATGTGTATGCAAATG-GTATATGATCTTATACATACCTGATTTGTCTTTGTCAATCAAGGGG i canFam3.chr31 I 1 I 2 s dasNov3.JH568778 635928 92 - 6883506 aAAAAACCAAGGCCGATTCAGCCATTGTGAAATGTGTATGTGAATGGATATAAGGTT-TACCCATAGCTGATCTGTCTTTGTGAATCAAAAAT i dasNov3.JH568778 C 0 C 0 e calJac3.chr21 19138139 247 + 50472720 I a score=2446919.000000 s hg38.chr21_GL383578v2_alt 34917 177 + 63917 GTGCAAAATGTAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTCATGCCTAAAA--GA-----GCACCGGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGTGATCTACT----GATCATTGATCATCTCACCATCTTCCTCCTCTTATCGCATAATTAAAAACTA s panTro5.chr21 872426 177 + 33445071 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTCATGCCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGTGATCTACT----GATCATTGATCATCTCACCATCTTCCTCCTCTTATCACATAATTAAAAACTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557075 177 + 46275980 GTGCAAAATATGG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTCATGCCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGTGATCTACT----GATCATTGATCATCTCACCATCTTCCTCCTCTTATCACATAATTAAAAACTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469173 177 - 13858734 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTCATGCCTAAGA--GA-----GCACCAGAGGCCATTATGAGAATGTGTAGA-------------TGTATTTTTGCTAAAAGTGATCTACT----GATCATTGATCATCTCACCATCTTCCTCCTCTTATCACATAATTAAAAACTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591341 177 + 32716333 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTGATACCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACATGTAGG-------------TGTATTTTTGCTAAAAGAGATCTACT----GATCATTGATCATCTCACCATCTTCCTCCTCTTATCACATAATTAAAAACTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663412 177 - 185818997 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTGATGCCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGAGATCTACT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACATAATTAAAAACTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471188 177 - 192294377 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTTATTGATGCCTAAAA--GA-----GCACCAGAGGCCGTTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGAGATCTACT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACATAATTAAAAACTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916052 177 + 9440265 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTGATGCCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAGGAGATCTACT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACATAATTAAAAACTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655759 177 + 21915920 GTTCAAAATATAG-----TTTTGGAGAGGCTGCATTGTGGTGACATGGCCTAAAA-TTCATTGATGCCTAAAA--GA-----GCACCCGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGAGATCTACT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACATAATTAAAAACTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300415 177 - 90373283 GTGCAAAATATAG-----TTTTGGAGAGGCTGCATCGTGGTGACATGGCCTAAAA-TTCACTGATGCCTAAAG--GA-----GCACCCGAGGCCATTATGAGAACGTGTACA-------------TGTATTTTTGCTAAAAGAGATCTACT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACATAATTAAAAACTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628092 177 + 1337817 GTTCAAAATATAG-----TTTTGGAGAGGCTGCATTGTGGTGACATGGCCTAAAA-TTCATTGATGCCTAAAA--GA-----GCACCCGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGAGATCTACT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACATAATTAAAAACTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607319 177 - 3237654 GTGCAATATATAG-----TTTTGGAGAGGCTGCATCTTGGTGACATGGCCTAAAA-TTCATTGATGCCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACGTGTAGA-------------TGTATTTTTGCTAAAAGAGATCTAGT----GATCATTGATCATCTCGCCATCTTCCTCCTCTGATCACGTAATTAAAAACTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138386 176 + 50472720 GTGCAAAATATAG-----TTTTGGAGAGTCTCCATCTTGGTGACATAGCCTAAAA-TTTATTGATACCTTAAA--GA-----GCACCAGAGGCCATTATGAGAACGTGTAGA-------------TATA-TTTTGCTAAAATAGATCTACT----GATCATTGATCACCACACCATCTGCCTCCTCTTATCACATAATCAAAAACTA i calJac3.chr21 I 247 C 0 s saiBol1.JH378168 2487007 181 + 13128814 GTGCAAAATATAA-----TTTTGGAGAGTCTCCATCTTGGTGACATAGCCTAAAA-TTCATTGATACCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACATGTAGA-------------TAGATTTTTGCTAAAAGAGATCTACTGATCGATCATTGATCATGACACCATCTGCCTCCTCTTATCACATAATCAAAAACTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024550 177 - 14377064 GTGAAAAATATAG-----TTTTGGAGAGTTTCCATCTTGGTGACATAGCCTAAAA-TTCATTGATACCTAAAA--GA-----GCACCAGAGGCCGTTATGAGAACGTGTAGA-------------TAGATTTTTGCTAAAAGAGATCTACT----GATCATTGATCACCACACCATCTGCCTCCTCTTATCACATAATCAAAAACTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072279 177 + 9889416 GTGCAAAATACAG-----TTTTGGAGAGTCTCCATCTTGGTGACATAGCCTAAAA-TTCATTGATACCTAAAA--GA-----GCACCAGAGGCCATTATGAGAACGTATAGA-------------TACATTTTTGCCAGAAGAGATCTACT----GATCATTGATCACCACACCATCTGCCTCCTCTTATCACATAATCAAAAACTA i aotNan1.NW_018487195v1 C 0 I 13 s micMur3.chr31 16841824 183 + 47401472 GTGCAAAATGTAT-----TTTTGTGGATGCTGTATCTTGGTGAAATGGCTTAAAATTTTACTGATACCTAAAG--GATGTAAGCACTAGAGGCCATTATGAGAACTTGTAGA-------------TGTGTTTTTGCTAGAAGAGAACTACT----GATCATTTATCATTCTACTGTCTGCCTCCTCATATCACATTATAAGAAACTC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1203079 180 - 2312742 GTGCAAAATATAT-----TTTTGTGGATGCTGTATCTTGGTGAAATGGCTTAAAA-TTTACTGATACC-AAAA--GATGTGAGCACCAAAGGCCATTATGAGAACTTGTAGA-------------TGGATTTTT-CTAAAAGAGAGCTACT----GATCATTTATCATTCTACCATCTGCCTCCTCGTATCACATTATCAGAAACTC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18324971 169 - 38779656 ATGCAAAATAGAT-----TTTTGTGGATGCCATGTCTTGGTGCCATGACTTAAAA-TTCACCAATACCTAAAA--GATG----------AGGCCATTATGAGAACTTGTAAA-------------AGTGCTTTTGCTAAAAGAGAACTACT----AATTATTTATCATTCCACAATCTGCCTCCTTGTGTAAC---ATCAAAAACTC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75820811 172 + 98207768 ACATAAAGTA-AA-----TTTTATGGGTATTTTATATTGATTTCAAACCTTAAAA-TACCTTCAT--CTAAAGTTGA-----GCAT---AGGCCATTAT-AAAACTTACAGA-------------TGTTCTTTTGTAGGAGGAGACCCACT----GCCCGTTTATCATACCACCATCTGCCTCTGCTTATCACATTATCTAAATCTA i mm10.chr16 C 0 I 14 s canFam3.chr31 11440880 180 + 39895921 GTG-----TGTAT-----TTTTGTGGTTGTTGTGTCTTG-TGATTTGGC-------TT---TGATGCCTAAGA--GATATAAGCTCAAGAGGGCATTACAAGACCTTGTATATGTGGTTCTAACTTGTATGTTTCCTAAAAGGGAACTACT----GATCATTTATCATTGTACCACCTGCCTCCTCTTATCACATTTTCACAATCTA i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 636020 117 - 6883506 GTGCATAATACAAAAGTTTTTTGTGGATGCTGCATCTTGGTGACTTGGCCTAAAA-TTCAAGGATA--TGGAA--GA-----GAGTTgtaaactataatgtaaact-----a-------------tatttcatggttagaagcaa-------------------------------------------------------------- i dasNov3.JH568778 C 0 I 42 a score=60469.000000 s hg38.chr21_GL383578v2_alt 35094 5 + 63917 GAGAA s panTro5.chr21 872603 5 + 33445071 GAGAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557252 5 + 46275980 GAGAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469350 5 - 13858734 GAGAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591518 5 + 32716333 GAGAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663589 5 - 185818997 GAGAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471365 5 - 192294377 GAGAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916229 5 + 9440265 GAGAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655936 5 + 21915920 GAGAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300592 5 - 90373283 GAGAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628269 5 + 1337817 GAGAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607496 5 - 3237654 GACAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138562 5 + 50472720 AAGAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2487188 5 + 13128814 AAGAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024727 5 - 14377064 AAGAG i cebCap1.NW_016107322v1 C 0 C 0 s micMur3.chr31 16842007 5 + 47401472 GAGAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1203259 5 - 2312742 CAGAG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18325140 5 - 38779656 AAGGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75820997 5 + 98207768 GAGAA i mm10.chr16 I 14 C 0 s canFam3.chr31 11441060 5 + 39895921 GAGTG i canFam3.chr31 C 0 C 0 e aotNan1.NW_018487195v1 6072456 13 + 9889416 I e dasNov3.JH568778 636137 42 - 6883506 I a score=2551701.000000 s hg38.chr21_GL383578v2_alt 35099 176 + 63917 TGGAAAGAAAT-CTCCAGGATCATAAGACAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAATGGCACTTTCCTGTCATGGCAATAGAAGATTTAAAGGCATGGATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA s panTro5.chr21 872608 175 + 33445071 TGGAAAGAAAT-CTCCAGGATCATAAGACAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAATGGCACTTTCCTGTCATGGCAATAGA-GATTTAAAGGCATGGATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGTCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557257 175 + 46275980 TGGAAAGAAAT-CTCCAGGATCATAAGACAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAATGGCACTTTCCTGTCATGGCAATAGA-GATTTGAAGGCATGGATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGTCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469355 175 - 13858734 TGGAAGGAAAT-CTCCAGGATCACAAGACAAAATAATCCCCAGTAAAGTTTCTGTTTCAAGGAATTGAATGGCACTTTCCTGTCACGGCAATAGAAGGTTTAAAGGCAT-GATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591523 176 + 32716333 TGGAAAGAAAT-CTCCAGGATCATAAGACAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAATGGCACTTTCCTGTCATGGCAATAGAAGATTTAAAGGCATAGATTTATG--------TAAATTCCTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663594 176 - 185818997 TAGAAGGAAAT-CTCCAGGATTGTAAGACAAAGTAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAGTGGCACTTTCTTGTCATGGCAATAGAAGATTTAAAGGCATGGATTTACG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471370 176 - 192294377 TAGAAGGAAAT-CTCCAGGATTGTAAGACAAAGTAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAGTGGCACTTTCTTGTCATGGCAATAGAAGATTTAAAGGCATGGATTTACG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916234 176 + 9440265 TGGAAGGAAAT-CTCCAGGATTGTAAGACAAAGTAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAGTGGCACTTTCTTGTCATGGCAATAGAAGATTTAAAGGCATGGATTTACG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5655941 176 + 21915920 TGGAAGGAAAT-CTCCAGGATCGTAAGACAAAGTAATGCCCAGTAAAGTTTCTGTTTCAAGGAATCGAATGGCACTTTCTTGTCATGGCAGTAGAAGATTTAAAGGCATGGATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300597 176 - 90373283 TGGAAGGAAAT-CTCCAGGATCGTAAGACAAAGTAATGCCCAGTAAAGTTTCTGTTTCAAGGAATCGAGTGGCACTTTCTTGTCATGGCAATAGAAGATTTAAAGGCATGGATTTACA--------TAAATTCTTTGGGGAGCT---GTCACATGGCTCACAGGGTTCATCTTCAGTCAGG-TATCAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628274 176 + 1337817 TGGAAGGAAAT-CTCCAGGATCGTAAGACAAAGTAATGCCCAGTAAAGTTTCTGTTTCAAGGAATCGAATGGCACTTTCTTGTCACGGCAGTAGAAGATTTAAAGGCATGGATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607501 176 - 3237654 TAGAAGGAAAT-CTCCAGGATCATAAGACAAAGGAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAATGGCACTTTCTTGTCATGGCAATAGAAGATTTAAAGGCATGGATTTATG--------TAAATTCTTTGGGGAGCT---GTCACATGGCCCACAAGGTTCATCTTCAGTCAGG-TATCAGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138567 175 + 50472720 TGAAAGGAAAT-ATCCAGGATCATAAGAAAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAAAGGAACTTTCCTGTCGTGACAACAGACAGTTTAAAGGCATGGATTTATG--------CAAACTTTTTGTGCAGCT---GTCACGTGGCCCACA-GGTCCATCTTCAGTTGGG-CATCAGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2487193 175 + 13128814 TGAAAGTAAAT-ATCCAGGATCATAAGACAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAAAGGCACTTTCCTGTTGTGTCAATAGACAGTTTAAAAGCATGGATTTATG--------CAAACTCTTTGTGGAGCT---GTCACATGGCCCACA-GGCTCATCTTCAGTCTGG-CATCAGA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024732 175 - 14377064 TGAAAGGAAAT-ATCCAGGATCATAAGACAAAATAATGCCCAGTGAAGTTTCTGTTTCAAGGAGTTGAAAGGCACTTTCCTGTCGTGACAATAGACAGTTTACAGGCATGGATTTATG--------CAAACTCTTTGTGGAGCT---GTCACATGACCCACA-GGTCCATCTTCAGTCGGA-CATCAGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072469 174 + 9889416 TGAAAAGAAAT-ATCCAGGATCATAAGACAAAATAATGCCCAGTAAAGTTTCTGTTTCAAGGAATTGAAAGGCACTTTCCTGTTGTGACAGTAGACAGTTTAAAGGCATGGATTTATG--------CAAACTCTTTATA-AGCT---GTCACATGGCCCACA-GGTCCATCTTCAGTCAGG-CATCAGA i aotNan1.NW_018487195v1 I 13 C 0 s micMur3.chr31 16842012 176 + 47401472 TAAAAAGAAAT-CCCTGGGATCATAAGACAAAATACTGGCCAGCAAAGTTTCTGTTTCAGAGAATTGAACGGCACTTCCCTGTCATAGCAAGAGAAGATTTAGAGATATGGATTTATG--------CAAACTCTTTGGGGAGCT---GTCCTATGGCCTCCAAGGTTCATTTGCAGTCATG-TATCAGA i micMur3.chr31 C 0 I 71 s proCoq1.NW_012147997v1 1203264 176 - 2312742 TGAAAAGAAAT-CCCTGGGATCCTAAGACAAAATACTGCCCAGCAAAGTTTCTGTTTCAGAGAATTGAATGACACTTCCCTGTCGTAGCaagagaagacttagagacatggatttatg--------caaactctttggggagct---gtcctgtggCTTCCAAGGTTCATTTGCAGTCTTG-TATCAGA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18325145 176 - 38779656 TGAAAAGAAAC-CCCTGTGATCATAAGACAAAATAATGCCCAGAAGAGTTGCTGTTTCAAGGAACTGGATGGCGCTTCCCTGTCATAACAAGAGAAGATTTAAAGAGGTGGATTCAAG--------CAAACTCTTTGGGGAGCT---GTCCTATGGCCCCCGAGGTGCATTTGCAGTCATG-TACCCCA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821002 187 + 98207768 -AAAAAAACATGCTTTGTGATTATAAGACAAAATAATGCCCAATCAAGTTGAAATTTCAAGGAATTGAATAGCAATTCCTTGACATAGCAAGAGAAGATTTAAAGGAATGGACTGATGGCTGTGAACACATTGTCTTTGGAGTGAGAGTCACGTGACCTCAGGGGTTCATCTGCAGCCATG-CATCAAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11441065 173 + 39895921 AGAAAAGAAAT-CCCTGGCATCATAAGATA---TATTTCCCAGTAAAGCTTCTCTTTTAAAGAGTTGAATGGCAACT-CCTGCCATAGCAAGAGAAGATTTAAAGACATAGATGGTTG--------CAAACTCTTGGGGAAGCT---GTTACATGACCTCTAAGGTTTGTGTGCAATCATACTATCAGA i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 636137 42 - 6883506 I a score=113834.000000 s hg38.chr21_GL383578v2_alt 35275 9 + 63917 AGGTTCTGC s panTro5.chr21 872783 9 + 33445071 AGGTTCTGC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557432 9 + 46275980 AGGTTCTGC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469530 9 - 13858734 AGGATCTGC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591699 9 + 32716333 AGGATCTGC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663770 9 - 185818997 AGGATCTGC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471546 9 - 192294377 AGGATCTGC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916410 9 + 9440265 AGGATCTGC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656117 9 + 21915920 AGGATCTGC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300773 9 - 90373283 AGGATCTGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628450 9 + 1337817 AGGATCTGC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607677 9 - 3237654 AGGATCTGC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138742 9 + 50472720 AGGATCTGC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2487368 9 + 13128814 AGGATCAGC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024907 9 - 14377064 AGGATCTGC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072643 9 + 9889416 AGGATCTGC i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1203440 9 - 2312742 GGGATCTGC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18325321 9 - 38779656 GGGATCTGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821189 9 + 98207768 AGGAGATTT i mm10.chr16 C 0 C 0 s canFam3.chr31 11441238 9 + 39895921 ATGATCCCT i canFam3.chr31 C 0 C 0 e micMur3.chr31 16842188 71 + 47401472 I e dasNov3.JH568778 636137 42 - 6883506 I a score=611754.000000 s hg38.chr21_GL383578v2_alt 35284 72 + 63917 AAAGAAGCATAGCAGATAACATCTAGCA------------------------------------------------ATACATAGGAGATAACATGTAGCAATGTTCTGGGCTAGCCAGTT s panTro5.chr21 872792 72 + 33445071 AAAGAAGCATAGCAGATAACATCTAGCA------------------------------------------------ATACATAGGAGATAACATGTAGCAATGTTCTGGCCTAGCCAGTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557441 72 + 46275980 AAAGAAGCATAGCAGATAACATCTAGCA------------------------------------------------ATACATAGGAGATAACATGTAGCAATGTTCTGGCCTAGCCAGTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469539 72 - 13858734 AAAGAAGCATAGCAGATAACATCTAGCA------------------------------------------------ATACATAGGAGATAACATGTAGCAATGTTCTGGCCTAGCCAGTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591708 120 + 32716333 AAAGGAGCATAGCAGATAACATGTAGCAATACACACGAGATAACATGTAGCAATACATACGAGATAACATGTAGCCATACATACGAGATAACATGTAGCAACGTTCTGGCCTAGCCAGTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663779 72 - 185818997 AAAGAAGCATAGCAGATAACATGTAGCA------------------------------------------------ATACATAGGAAATAACATGTAGCAATGCTCTGGCCTAGCCAGTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471555 72 - 192294377 AAAGAAGCATAGCAGATAACATGTAGCA------------------------------------------------ATACATAGGAAATAACATGTAGCAATGCTCTGGCCTAGCCAGTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916419 72 + 9440265 AAAGAAGCATAGCAGATAACATGTAGCA------------------------------------------------ATACATAGGAAATAACATGTAGCAATGCTCTGGCCTAGCCAGTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656126 72 + 21915920 AAAGAagcatagcagataacatgtagca------------------------------------------------atacataggaaatagcatgtagcaatGCTCTGGCCTAGCCAGTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300782 72 - 90373283 AAAGAAGCATAGCAGATAACATGTAGCA------------------------------------------------ATACATAGGAAATAACATGTAGCAATGCTCTGGCCTAGCCAGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628459 72 + 1337817 AAAGAagcatagcagataacatgtagca------------------------------------------------atacataggaaatagcatgtagcaatGCTCTGGCCTAGCCAGTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607686 72 - 3237654 AAAGAAGCATAGCAGATAACATGTAGCA------------------------------------------------ATACATAGGAAATAACACGTAGCAATGCTCTGGCCTAGCCAGTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138751 49 + 50472720 AAAGGAACATAG---------------A------------------------------------------------A--------GGATAACATGTAGCAATGCTCTGGCGTAGCCAGTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2487377 49 + 13128814 AAAGGAACATAG---------------A------------------------------------------------A--------GGATAACACGTAGCAATGCTCTGGGGTAGCCAGTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024916 49 - 14377064 AAAGGAACATAG---------------A------------------------------------------------A--------GGATAACATGTAACAATGCTCTGGCATAGCCAGTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072652 46 + 9889416 AAAGGAACAT------------------------------------------------------------------A--------GGATAACATGTAGCAATGCTCTGGTGTAGCCAGTG i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1203449 50 - 2312742 GAAGGAGC-------------CTTAGCA---------------------------------------------------------GGATGACATGTGGCAATGCTCTGGCCCAGCCACTG i proCoq1.NW_012147997v1 C 0 I 12 s otoGar3.GL873528 18325330 50 - 38779656 GAAGAGGC-------------TGGAGCA---------------------------------------------------------GGAAGACATGTGGCAGTGCTCTGGCCCAGCCACTG i otoGar3.GL873528 C 0 I 12 s mm10.chr16 75821198 53 + 98207768 GAAGGAGA---------CACGTATAACA---------------------------------------------------------GGATAGCATGTGGCAGTAATC-GGCCTAGCCAGTG i mm10.chr16 C 0 I 21 s canFam3.chr31 11441247 53 + 39895921 AAAAGATC-------------CATAACA------------------------------------------------GGACA------ACAATAGGTGGCAATGCCCTGGCCTACTCAGTG i canFam3.chr31 C 0 I 12 s dasNov3.JH568778 636179 47 - 6883506 --------------aatgaaatataaca-----------------------------------------------------------aggaaatgtgGTGATGCTTTGGTCTAGCCACTG i dasNov3.JH568778 I 42 C 0 e micMur3.chr31 16842188 71 + 47401472 I a score=2216282.000000 s hg38.chr21_GL383578v2_alt 35356 156 + 63917 CCCCAGGAG----GCTCCCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC---------AAAAAAAGAG--CAGTG---TT-TTCTTT-C---ATTAGGTTTTATTCTCATATTATCAATGGTAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT s panTro5.chr21 872864 156 + 33445071 CCCCAGGAG----GCTCCCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC---------AAAAAAAGAG--CAGTG---TT-TTCTTT-C---ATTAGGTTTTATTCTCATATTATCAATGGTAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557513 156 + 46275980 CCCCAGGAG----GCTCCCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC---------AAAAAAAGAG--CAGTG---TT-TTCTTT-C---ATTAGGTTTTATTCTCATATTATCAATGGTAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469611 156 - 13858734 TCCCAGGAG----GCTCCCTCT--GTGGCTTCTGAATGGCCCATTTCATTCTGCATAC---------AAAAAAAGAG--CAGTG---TT-TTCTTT-C---ATTAGGTTTTATTCTCATGTTGTCAATGGTAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591828 157 + 32716333 CCCCAGGAG----GCTCCCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC--------AAAAAAAAGAG--CACTG---TT-TTCTTT-C---ATCAGATTTTATTCTCATATTGTCAATGGTAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152663851 162 - 185818997 CCCAAGGAG----GCTCTCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC---AAAAAAAAAAAAAGAG--CAGTG---TT-TACTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGTAATTCAAG--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471627 162 - 192294377 CCCAAGGAG----GCTCTCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC---AAAAAAAAAAAAAGAG--CAGTG---TT-TACTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGTAATTCAAG--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916491 163 + 9440265 CCCAAGGAG----GCTCTCTCT--GTGGTTTCTGAATGGCCCGTTTCATTCTGCATAC--AAAAAAAAAAAAAAGAG--CAGTG---TT-TACTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGTAATTCAAG--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656198 160 + 21915920 CCCAAGGAG----GCTCTCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC-----AAAATAAAAAAGAG--CAGTG---TT-TACTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGTAATTCAAG--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12300854 160 - 90373283 CCCAAGGAG----GCTCTCTCT--GTGGTTTCTGAATGGCGCATTTCATTCTGCATAC-----AAAAAAAAAAAGAG--CAGTG---TT-TTCTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGCAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGATTCCCAACATCAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628531 160 + 1337817 CCCAAGGAG----GCTCTCTCT--GTGGTTTCTGAATGGCCCATTTCATTCTGCATAC-----AAAATAAAAAAGAG--CAGTG---TT-TACTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGTAATTCAAG--TATTCATTTATCAATATACTGGTAGGTGATTCCCAACATCAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607758 165 - 3237654 CCCAAGGAG----GCTCTCTCT--GTGGTGTCTGAATGGCCCATTTCATTCTGCATCCAAAAAAAAAAAAAAAAGAG--CAGTG---TT-TTCTTT-C---ATTAGCTTTTATTCTCATATTATCAATGGTAATTCAAT--TATTCATTTATCCATATACTGGTAGGTGAGTCCCAACATCAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138800 161 + 50472720 CCCCAGGAG----GCTCTCTCT--GTGGTTTCTGAATTGCCCATTTCATTCTGCAAAT------GGAAAAAAAAAAGAGCAGTG---GT-TTCTTT-C---ATTATCTTTTATTCTCATGTTATCAATGGTAATTCAAT--AATTCATTTATCTATATACTGGTAGGTGATTCCCAACATCAC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2487426 160 + 13128814 CCCCAGGAG----ACTCTCTAT--GTGGTTTCTGAATGGCCCGTTTCATTCTGCAAAC------AGAAAAAAAAAATA-CAGTG---TT-TTCTTT-C---TTTATCTTTTATTCTCATGTTATCAATAGTAATTCAAT--TATTCATTTGTCTTTATACTGGTAGGTGATTCCCAACATCAC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7024965 161 - 14377064 CCCCCGGAG----GTTCTCTCT--GTGGTTTCTCAATGGCCCATTTCATTCTGAAAAC------AGAAAAAAAAGAG--TAGTG---TT-TTCTTT-C---ATTATCTTTTATTCTGATGTTATCAATGGTAATTCAATTGTATTCATTTATCTATATACTGGTAAGTGATTCCCAACATCAC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072698 156 + 9889416 CCCCAGGAG----GCTCTCTCT--TTGGTTTCTGAATGGCCCATTTCATTCTGCAAAC------AGAAAAAAAAGAG--CAGTG---TT-TTCTTTCC---ATTATCTTTTATTCTCATGTTATCAATGGTAATTCATT--TATTCATTTA----TATACTGGTAGGTGATTCCCAACATCAC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16842259 158 + 47401472 CCCCAGGAG----GCTCTCCCC--GGGGTTTTAGAATGGCCCATTTCATTCCGCATAC--------AAAAGAAAGAG--CAGAA---TCATTTTTT-A---ATTAGCTTTTATTCTCAAGTTATCAATGGTAATCCAAT--TATTTATTTATCCATGTGCTGGTAGATGATTCCCAACATCAT i micMur3.chr31 I 71 I 419 s proCoq1.NW_012147997v1 1203511 158 - 2312742 CCCCAGGAG----GCTCTCCCC--GTGGTTTCAGAATGGCCCATTTCATTCAGCATAC--------AAAAGAAAGAG--CAGAA---TCATTTTTT-A---ATTAGCTTTTATTCTCAAGTTATCAATGGTAACTCAAT--TATTTATTTATCCATGTGCTGGCAGATGATTCCCAACATCAT i proCoq1.NW_012147997v1 I 12 C 0 s otoGar3.GL873528 18325392 152 - 38779656 ACCCGGGAG----GCTCTCCCC--AGGGTTTCTGAATGGCCCACTTTATTCA--------------AAAAGAAAGAG--CAGAA---TCATTTTTT-A---ATTAGCTTTTATCCTCAAATTATCAATGGTAACCTAAT--CATTTATTTATCCACGTGTTGGCAGATGATTCCCAGCATCAT i otoGar3.GL873528 I 12 C 0 s mm10.chr16 75821272 145 + 98207768 CCCCA--AG----GCTTTCTCT--GTGGTCTCTGAATG----AGTCCATCACTCACAC--------AAAAGGAAAGG--AAGTA---GT-TTTGAA-A---ATTACCTATCCTTCTCAAATTATCAATGGTG----AAC--AATTCA-TTATTAATGTATTTCTAG-TAACTCACAGCTTTGT i mm10.chr16 I 21 C 0 s canFam3.chr31 11441312 163 + 39895921 CCCTAGAAGGAGAGCCCTCCCA--GTGGTTTCTGAATGGCTGAATTTATTCATCAGAC--------AAAAGAGAGAG--CAGAG---TC-ATTTTT-TAAAATTAGCTTTTATTCTCAAGTTATCAGTGATAACTCATT--TATTTATTCATATGTTTATTCAC-GATGATTCCCTGCATTAC i canFam3.chr31 I 12 C 0 s dasNov3.JH568778 636226 141 - 6883506 -TGAAGTAG----GGTGTCTTCTAATGAGTCCTGACTGTGCCAGTTCATTCAGTGCGT--------AAAAGGGAGAA--TGAAGAAATT-TTGTTT-A---ATTAG--------------------ATGGTAATTCAAT--TATTTATTTATTTATGTGCTGGCAGATGATTCCCAGCATCAT i dasNov3.JH568778 C 0 C 0 a score=48370.000000 s hg38.chr21_GL383578v2_alt 35512 3 + 63917 TTA s panTro5.chr21 873020 3 + 33445071 TTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557669 3 + 46275980 TTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469767 3 - 13858734 TTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591985 3 + 32716333 TTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664013 3 - 185818997 TTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471789 3 - 192294377 TTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916654 3 + 9440265 TTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656358 3 + 21915920 TTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301014 3 - 90373283 TTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628691 3 + 1337817 TTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607923 3 - 3237654 TTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138961 3 + 50472720 TTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2487586 3 + 13128814 TTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7025126 3 - 14377064 TGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072854 3 + 9889416 TTA i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1203669 3 - 2312742 TTA i proCoq1.NW_012147997v1 C 0 I 1953 s otoGar3.GL873528 18325544 3 - 38779656 TTA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821417 2 + 98207768 -TG i mm10.chr16 C 0 I 1 s canFam3.chr31 11441475 3 + 39895921 TTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 636367 3 - 6883506 TTA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16842417 419 + 47401472 I a score=702607.000000 s hg38.chr21_GL383578v2_alt 35515 105 + 63917 TTAAATTG---AAAGTAACAAAATTCTAAGTTATACTTG--C-CACCAATCCAATTTCTCT---TTTTTTG------TTATAA-------ATATAATAC--TTTAGA-ATATTTGGAAAGTAT------------TGAAAAA s panTro5.chr21 873023 105 + 33445071 TTAAATTG---AAAGTAACAAAATTCTAAGGTATACTTG--C-CACCAATCTAATTTCTCT---TTTTTTG------TTATAA-------ATATAATAC--TTTAGA-ATATTTGGAAAGTAT------------TGAAAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557672 105 + 46275980 TTAAATTG---AAAGTAACAAAATTCTAAGGTATACTTG--C-CACCAATCCAATTTCTCT---TTTTTTG------TTATAA-------ATATAATAC--TTTAGA-ATATTTGGAAAGTAT------------TGAAAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469770 105 - 13858734 TTAAATTG---AAAGTAACAAAATTCTAAGGTATACTTG--C-CACCAATCCAATTTCTCT---TTTCTTG------TTATAA-------ATGTAATAC--TTTAGA-ATATTTGGAAAGTAT------------TGAAAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1591988 104 + 32716333 TTAAATTG---AAAGTAACAAAATTCTAAGGTATACTTG--C-CACCAATCTAATTTCTCT---TTT-TTG------TTATAA-------AGATAATAC--TTTAGA-ATATTTGGAAAATAT------------TGAAAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664016 71 - 185818997 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTG------T-------------TATAATAC--TTTAGA-ATATTGGGAAAGTAT------------TGAAAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471792 71 - 192294377 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTG------T-------------TATAATAC--TTTAGA-ATATTGGGAAAGTAT------------TGAAAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916657 71 + 9440265 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTG------T-------------TATAATAC--TTTAGA-ATATTGGGAAAGTAT------------TGAAAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656361 71 + 21915920 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTA------T-------------TATAATAC--TTTAGA-ATATTGGGAAAGTAT------------TGAAAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301017 77 - 90373283 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTA------TTATAA-------ATATAATAC--TTTAGA-ATATTGGGAAAGTAT------------TGAAAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628694 71 + 1337817 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTG------T-------------TATAATAC--TTTAGA-ATATTGGGAAAGTAT------------TGAAAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 607926 77 - 3237654 TTAAATTG---AAAGTAACAAAATTCTAAG----------------------------------TTTTTTG------TTATAA-------ATATAATAT--TTTAGA-ATATTTGGAAAGTAT------------TGCAAAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19138964 100 + 50472720 TTATTTTG---AAAGTAATGCAATTCTAAGGTATACTTG--C-CACCAATCTAA--TT------TTTTTTG------TTAAAA-------ATATAATAC--TTTAGA-ATATTTGCAAAGTAC------------TGAAAAA i calJac3.chr21 C 0 I 893 s saiBol1.JH378168 2487589 98 + 13128814 TTATTTTG---AAATTAATGTAATTCTAAGGTATACTTG--C-CACCAATCTAA----------TATTCTG------TTAAAA-------ATATAGTAC--TTTAGA-ATATTTGCAAAATAC------------TGAAAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7025129 102 - 14377064 TTATTTTG---AAAGTAATGCAATTCTCAGGTATATTTG--C-CACCAATCTAATTTT------TTTTTTG------TTAAAA-------ATATAATAC--TTTAGA-ATATTTGCAAAGTAC------------TGAAAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6072857 102 + 9889416 TTATTTTG---AAAGTAATGCAATTCTAAGGTATACTTG--C-CACCAATCTAATTTT------TTTTTTG------TTAAAA-------ATATAATGC--TTTAGA-ATATTTGCAAAGTAC------------TGAAAAA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18325547 120 - 38779656 CTAGATCA---AAAGTAATAAAATTCTAAAGAACACTTG-CC-CACCAATTTACTGTTTCT--CTTTTTGG------TTATAA-------ATTTAATAT--ACAAGACCTGTCCAGAAAGTATACAGCCATATTATATAAAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821420 109 + 98207768 -----TTGACCAAAGTAATATGATTAGAATGTATACCTCCCC-CTTCATTTTAATGTCTAT---TAATCGGACAGGTTTCAAT-------ATACAATAA--TTTAGA-ACACTTGGAAG--AT------------TAAAAAA i mm10.chr16 I 1 I 3 s canFam3.chr31 11441478 108 + 39895921 CTAAATTA---CAAGTAATATCATTCCAAAGTATGATTG--CATACCAGTTTAAGTTTCTC---TTTTGGG------ttataa-------atttaatataatttaga-atatttgaaaattaC------------TGAAAAG i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 636370 116 - 6883506 TTAAATCA---AAAGCAATACAATTCTAAGGTAGATTTG--TTTAGTAGTTTAGTGTTTCTGAtttttttg------ttgtaaatttaatatatgataa--tttaga-caatttggaaagtac------------tgaaaga i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16842417 419 + 47401472 I a score=30615.000000 s hg38.chr21_GL383578v2_alt 35620 3 + 63917 AGT s panTro5.chr21 873128 3 + 33445071 AGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557777 3 + 46275980 AGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469875 3 - 13858734 AGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592092 3 + 32716333 AGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664087 3 - 185818997 AGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471863 3 - 192294377 AGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916728 3 + 9440265 AGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656432 3 + 21915920 AGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301094 3 - 90373283 AGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628765 3 + 1337817 AGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608003 3 - 3237654 AGT i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2487687 3 + 13128814 AGT i saiBol1.JH378168 C 0 I 2 s cebCap1.NW_016107322v1 7025231 3 - 14377064 AGT i cebCap1.NW_016107322v1 C 0 I 812 s aotNan1.NW_018487195v1 6072959 3 + 9889416 AGT i aotNan1.NW_018487195v1 C 0 I 805 s otoGar3.GL873528 18325667 3 - 38779656 AGT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821532 3 + 98207768 ACT i mm10.chr16 I 3 C 0 s canFam3.chr31 11441587 2 + 39895921 AA- i canFam3.chr31 I 1 I 1 s dasNov3.JH568778 636486 3 - 6883506 aat i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16842417 419 + 47401472 I e calJac3.chr21 19139064 893 + 50472720 I a score=6986.000000 s hg38.chr21_GL383578v2_alt 35623 3 + 63917 G--GA s panTro5.chr21 873131 5 + 33445071 GAAGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557780 5 + 46275980 GAAGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469878 5 - 13858734 GAAGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592095 5 + 32716333 GAAGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664090 5 - 185818997 GAAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471866 5 - 192294377 GAAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916731 5 + 9440265 GAAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656435 5 + 21915920 GAAGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301097 5 - 90373283 GAAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628768 5 + 1337817 GAAGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608006 5 - 3237654 GAAGA i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2487692 3 + 13128814 --AGA i saiBol1.JH378168 I 2 C 0 s otoGar3.GL873528 18325670 3 - 38779656 --GGA i otoGar3.GL873528 C 0 I 390 s mm10.chr16 75821535 3 + 98207768 -ATG- i mm10.chr16 C 0 C 0 s canFam3.chr31 11441590 3 + 39895921 GTA-- i canFam3.chr31 I 1 C 0 s dasNov3.JH568778 636489 3 - 6883506 -aaa- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16842417 419 + 47401472 I e aotNan1.NW_018487195v1 6072962 805 + 9889416 I e cebCap1.NW_016107322v1 7025234 812 - 14377064 I e calJac3.chr21 19139064 893 + 50472720 I a score=58658.000000 s hg38.chr21_GL383578v2_alt 35626 7 + 63917 CTGATTA s panTro5.chr21 873136 7 + 33445071 CTGATTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557785 7 + 46275980 CTGATTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469883 7 - 13858734 CTGATTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592100 7 + 32716333 CTGATTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664095 7 - 185818997 CTGATTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471871 7 - 192294377 CTGATTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916736 7 + 9440265 CTGATTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656440 7 + 21915920 CTGATTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301102 7 - 90373283 CTGATTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628773 7 + 1337817 CTGATTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608011 7 - 3237654 CTGATTA i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2487695 7 + 13128814 CTGATTA i saiBol1.JH378168 C 0 C 0 s mm10.chr16 75821538 7 + 98207768 AAGGTTA i mm10.chr16 C 0 C 0 s canFam3.chr31 11441593 7 + 39895921 AAGATTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 636492 5 - 6883506 --gaata i dasNov3.JH568778 C 0 I 3 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16842417 419 + 47401472 I e aotNan1.NW_018487195v1 6072962 805 + 9889416 I e cebCap1.NW_016107322v1 7025234 812 - 14377064 I e calJac3.chr21 19139064 893 + 50472720 I e otoGar3.GL873528 18325673 390 - 38779656 I a score=22800.000000 s hg38.chr21_GL383578v2_alt 35633 2 + 63917 TT s panTro5.chr21 873143 2 + 33445071 TT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557792 2 + 46275980 TT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469890 2 - 13858734 TT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592107 2 + 32716333 TT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664102 2 - 185818997 TT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471878 2 - 192294377 TT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916743 2 + 9440265 TT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656447 2 + 21915920 TT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301109 2 - 90373283 TT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628780 2 + 1337817 TT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608018 2 - 3237654 TT i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2487702 2 + 13128814 TT i saiBol1.JH378168 C 0 I 806 s micMur3.chr31 16842836 2 + 47401472 TT i micMur3.chr31 I 419 C 0 s mm10.chr16 75821545 2 + 98207768 TT i mm10.chr16 C 0 I 3 s canFam3.chr31 11441600 2 + 39895921 TC i canFam3.chr31 C 0 I 3 s dasNov3.JH568778 636500 2 - 6883506 tt i dasNov3.JH568778 I 3 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e aotNan1.NW_018487195v1 6072962 805 + 9889416 I e cebCap1.NW_016107322v1 7025234 812 - 14377064 I e calJac3.chr21 19139064 893 + 50472720 I e otoGar3.GL873528 18325673 390 - 38779656 I a score=172327.000000 s hg38.chr21_GL383578v2_alt 35635 20 + 63917 TAAAAGTCTCCAAACCTATG s panTro5.chr21 873145 20 + 33445071 TAAAAGTCTCCAAACCTATG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557794 20 + 46275980 TAAAAGTCTCCAAACCTATG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469892 20 - 13858734 TAAAAGTCTCCAAACCTATG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592109 20 + 32716333 TAAAAGTCTCCAAACCTATG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664104 20 - 185818997 TAAAAGTCTCCAAACCTATG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471880 20 - 192294377 TAAAAGTCTCCAAACCTATG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916745 20 + 9440265 TAAAAGTCTCCAAACCTATG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656449 20 + 21915920 TAAAAGTCTCCAAACCTATG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301111 20 - 90373283 TAAAAGTCTCCAAACCTATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628782 20 + 1337817 TAAAAGTCTCCAAACCTATG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608020 20 - 3237654 TAAAAGTCTCCAAACCTATG i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16842838 20 + 47401472 TAAAAATCTCCGATCCTATG i micMur3.chr31 C 0 C 0 s mm10.chr16 75821550 16 + 98207768 AAAAGATCTCCATACA---- i mm10.chr16 I 3 C 0 s canFam3.chr31 11441605 20 + 39895921 AAAAAATCTCCAAACCCATA i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 636502 20 - 6883506 taaaaaaccccaaacccaaa i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e aotNan1.NW_018487195v1 6072962 805 + 9889416 I e cebCap1.NW_016107322v1 7025234 812 - 14377064 I e saiBol1.JH378168 2487704 806 + 13128814 I e calJac3.chr21 19139064 893 + 50472720 I e otoGar3.GL873528 18325673 390 - 38779656 I a score=26002.000000 s hg38.chr21_GL383578v2_alt 35655 2 + 63917 GA s panTro5.chr21 873165 2 + 33445071 GA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557814 2 + 46275980 GA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469912 2 - 13858734 GA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592129 2 + 32716333 GA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664124 2 - 185818997 GA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471900 2 - 192294377 GA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916765 2 + 9440265 GA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656469 2 + 21915920 GA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301131 2 - 90373283 GA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628802 2 + 1337817 GA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608040 2 - 3237654 GA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19139957 2 + 50472720 GA i calJac3.chr21 I 893 C 0 s saiBol1.JH378168 2488510 2 + 13128814 GA i saiBol1.JH378168 I 806 C 0 s aotNan1.NW_018487195v1 6073767 2 + 9889416 GA i aotNan1.NW_018487195v1 I 805 C 0 s micMur3.chr31 16842858 2 + 47401472 AA i micMur3.chr31 C 0 C 0 s mm10.chr16 75821566 2 + 98207768 AA i mm10.chr16 C 0 C 0 s canFam3.chr31 11441625 2 + 39895921 GA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 636522 2 - 6883506 gg i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e cebCap1.NW_016107322v1 7025234 812 - 14377064 I e otoGar3.GL873528 18325673 390 - 38779656 I a score=2054328.000000 s hg38.chr21_GL383578v2_alt 35657 181 + 63917 TATC--CACAATTAATATTTTG--------ATG-------TG------TGT-ATGGACACATACATCTCAATGCTC---ACAC---ACACCATTACTACATGGT-----TAAAGAAA----CTGAGGCTTTCCCTTTCTATGAAACATAGCAgg-aattctagtataccaagacgaagggtttcacattgcctttcattccatgtcaagtgcaatgcttaa s panTro5.chr21 873167 181 + 33445071 TATC--CACCATTAATATTTTG--------ATG-------TG------TGT-ATGGACACATACATCTCAATGCTC---ACAC---ACACCATTACTACATGGT-----TAAAGAAA----CTGAGGCTTTCCCTTTCTATGAAACATAGCAGG-AAGTCTAGTATACCAAGATGaagggtttcatattgcctttcattctatgtcaagtgcaatgcttaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557816 181 + 46275980 TATC--CACCATTAATATTTTG--------ATG-------TG------TGT-ATGGACACATACATCTCAATGCTC---ACAC---ACACCATTACTACATGGT-----TAAAGAAA----CTGAGGCTTTCCCTTTCTATGAAACATAGCAgg-aattctagtataccaagacgaagggtttcatattgcctttcattctatgtcaagtgcaatgcttaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 469914 181 - 13858734 TATC--CACACTTAATATTTTG--------ATG-------TG------TGT-ATGGACACATACATCTCAATGCTC---ACAC---ACACCATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCTTTCTATGAAACATAGCAGG-AATTCTAATATACCAAGAcgaagggtttcatattgcctttcattctatgtcaagtgcaatgcttaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592131 180 + 32716333 TATC--CACAATT-ATATTTTG--------ATG-------TG------TGT-ATGGACACAAGCGTCTCAACGCTC---ACAC---ACACCATTACTATATGGT-----TAAAGAAA----CTGAGGCCTTCCCATTCTATGAAACACAGCAgg-aattctagtataccaagacaaagggtttcatattgccttttattctatgtcaaatgcaatgcttaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664126 179 - 185818997 TATC--CACAATTAATATGTTG--------ATG-------TG------TGT-ACGGACACATGCATCTCAATGCTC---ACAC---A---CATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCCTTCTATGAAACATAGCAGGAAATTCTAGTATaccgtgacaaagggtttcatatttcctttcattccatgtcaagttcaatgcttaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159471902 179 - 192294377 TATC--CACAATTAATATGTTG--------ATG-------TG------TGT-ACGGACACATGCATCTCAATGCTC---ACAC---A---CATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCCTTCTATGAAACATAGCAGGAAATTCTAGTATaccgtgacaaagggtttcatatttcctttcattccatgtcaagttcaatgcttaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916767 179 + 9440265 TATC--CACAATTAATATGTTG--------ATG-------TG------TGT-ACGGACACATGCATCTCAATGCTC---ACAC---A---CATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCCTTCTATGAAACATAGCAGGAAATTCTAGTATaccgtgacaaagggtttcatatttcctttcattccatgtcaagttcaatgcttaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656471 179 + 21915920 TATC--CACAATTAATATGTTG--------ATG-------TG------TGT-ACGGACACATGCATCTCAATGCTC---ACAC---A---CATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCCTTCTATGAAACATAGCAGGAAATTCTAGTATaccgtgacaaagggtttcatatttccttttattccatgtcaagtttaatgcttaa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301133 183 - 90373283 TATC--CACAATTAATATTTTG--------ATG-------TG------TGT-ACGGACACGTGCATCTGAATGCTCACAACAC---A--CCATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCCTTCTATGAAACATAGCAGGAAATTCTAGTATACTGTGAcaaagggtttcatatttccttttattccatgtcaagttcaatgcttaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628804 179 + 1337817 TATC--CACAATTAATATGTTG--------ATG-------TG------TGT-ACGGACACATGCATCTCAATGCTC---ACAC---A---CATTACTATATGGT-----TAAAGAAA----CTGAGGCTTTCCCCTTCTATGAAACATAGCAGGAAATTCTAGTATaccgtgacaaagggtttcatatttccttttattccatgtcaagtttaatgcttaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608042 180 - 3237654 TATC--CACAATTAATATTTTG--------ATG-------TG------TGT-ACAGACACATGCATCTCAATACTT---ACACGCAA---CATTACTATATGGT-----TAAAGAAA----CT--GTCTTTCCCCTTCTATGAAACATAGCAggaaattctagtataccatgacaaagagtttcatatttccttttattccatgtcaagttcaacgcttca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19139959 182 + 50472720 TATC--CACAAATCATATTTTG--------ATA-------TG------TAT-ATGGACACATGCATCTCAATGCTC---ACAC---ACACTGTTACTATATGAT-----TAAAGAAA----CTAAGGCTTTCCCCTTCTATGAAACATAGCAggaaattttagtataccaagacaaagggtttcatattgccttttattccatgtcaaatgccatgcttaa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2488512 181 + 13128814 TATC--CACAATTAATATTTTG--------ATG-------TG------TGT-ACAGACACATGCATCTCTATGCTC---ACAC---ACACTGTTACTATATGAT-----TAAAGAAA----CTAAGCCTTTCCCCTTCTATGAAACATAGCAggaacctttagtataccaagacaaagggtttcatattg-cttttattccatgtcgaatgccatgcttaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026046 182 - 14377064 tatc--cacaATTAATATTTTG--------ATG-------TG------TGT-ACAGACACATGCATCTCAATGCTC---ACAC---ACACTGTTACTATATGAT-----TAAAGAAA----CTAAGACTTTCCCCTTCTGTGAAACATAGCAggaaatttaagtataccaagacaaagggtttcatattgctttttattccatgtcgaatgccatgcttaa i cebCap1.NW_016107322v1 I 812 C 0 s aotNan1.NW_018487195v1 6073769 182 + 9889416 TATT--CACAATTAATATTTTG--------ATG-------TG------TGT-ACGGACACATGCATCTCAATACTC---ACAC---ACACTGTTACTATAAGAT-----TAAAGAAA----CTAAGCCTTTCCCCTTCTATGAAACATAGCAggaaattttagtataccaagacaaagggtttcatattgccttttattccatgtcgaatgccatgcttaa i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16842860 189 + 47401472 TATC--CACAATGAATATTTTGGTGGGTGTATG-------TA------TAT-ATGGGCACATGCATTTCAACACTC---ACAT---ATGCTCCTACTATACAGT-----TAAAAAAA----CTGGGGCTTCCATCTTCTACAAAACATGgaaggaaattttaggctaccaagacaaaaggtttcaca-tgccttttgttccaagtcaagtgcaatgtttaa i micMur3.chr31 C 0 C 0 s mm10.chr16 75821568 152 + 98207768 TATCATAGCTATTAATG----A--------ATG-------TA------TGTGAAGGGTATATACATTTCAATATTC---ACTC---AGATGAGTACTATATAAC-----TGAACAAA----CGGGAGGTCTCTCTTTCTATGGAAGATAG----------------------------AGTTTCAC-TTTCCCTTCATTCCATATAAAGTATAGTGCTTAG i mm10.chr16 C 0 C 0 s canFam3.chr31 11441627 187 + 39895921 TAAA--CACAATT----TTTTT--------GTG-------TGCATAAATGT-AAGGACATATGCATCTCAACACTT---ATAT---ACACTCCTGTTATAAGTTA----TGAAGAAATGACCTGGGACTATCCTTATCTTTAAAACATagaaggaaattttaagatagcaatacaaaaagtttcacatg--cctttattccatgtcaaatgcaatactcaa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 636524 173 - 6883506 tacc--cacaaataatattttg--------atgtatAGCATG------TGT-TTGGGCACTTGCTTTTCACTGCTC---ACAC---ATACTCCTACTATAAGATATTTTTTAAAAAT----TT--GGTTACCCTATTCAATGGAAGACACCT---TAATTTAAAATA----------------Tgttttgcatattattccatgtcaaatgctaggctcaa i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e otoGar3.GL873528 18325673 390 - 38779656 I a score=138444.000000 s hg38.chr21_GL383578v2_alt 35838 9 + 63917 tctctatgc s panTro5.chr21 873348 9 + 33445071 tctccatgc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14557997 9 + 46275980 tctctatgc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470095 9 - 13858734 tttctatgc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592311 9 + 32716333 tctctatgc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664305 9 - 185818997 tctctacgc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472081 9 - 192294377 tctctacgc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916946 9 + 9440265 tctctatgc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656650 9 + 21915920 tctctatgc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301316 9 - 90373283 tctctatgc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628983 9 + 1337817 tctctatgc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608222 9 - 3237654 tctctatgc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140141 9 + 50472720 tctctatgc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2488693 9 + 13128814 tctctatgc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026228 9 - 14377064 tctctatgc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6073951 9 + 9889416 tctctatgc i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16843049 9 + 47401472 tctctatgc i micMur3.chr31 C 0 I 336 s otoGar3.GL873528 18326063 9 - 38779656 TTTCAGTGT i otoGar3.GL873528 I 390 C 0 s mm10.chr16 75821720 9 + 98207768 TTTCTGTAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11441814 9 + 39895921 ttttcatgc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 636697 9 - 6883506 tctctttgc i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I a score=691797.000000 s hg38.chr21_GL383578v2_alt 35847 61 + 63917 agacgtg-acctggtc-------ttctcccag----------------------tcctcccctggataagtggaattttcattggttggag s panTro5.chr21 873357 61 + 33445071 agacgtg-acctggtc-------ttctcccag----------------------tcctcccctggataaatggaattttcattggttggag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558006 61 + 46275980 agacgtg-acctggtc-------ttctcccag----------------------tcctcccctggataaatggaattttcattggttggag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470104 61 - 13858734 agacgtg-acctggtc-------ttctcccag----------------------tcctcccctggataagtggaattttcattggttggag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592320 61 + 32716333 agaagtg-acctggtc-------ttctcccag----------------------tcctcccctggataagtggaattctcattggttggag i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664314 61 - 185818997 agaagtg-accctgtc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472090 61 - 192294377 agaagtg-accctgtc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5916955 61 + 9440265 agaagtg-accctgtc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656659 61 + 21915920 agaagtg-atcctgtc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301325 61 - 90373283 agaagtg-atcctatc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 628992 61 + 1337817 agaagtg-atcctgtc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608231 61 - 3237654 agaagtg-accctgtc-------ttctcccag----------------------tcctcctctggataagtggaattttcattggttggag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140150 61 + 50472720 agaaatg-acctggtc-------ttttcccag----------------------tcctcccctggataaatggaattttcattggttggag i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2488702 61 + 13128814 agaaatg-acctggtc-------ttttcccag----------------------tcctctcctggataaatggaattttcattggttggag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026237 60 - 14377064 agaaatg-acct-gtc-------ttttcccag----------------------tcctcccctggttaaatggaattttcattggttggag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6073960 60 + 9889416 agaaatg-acctggtc--------tttcccag----------------------ttctcccctggataaatggaattttcatcagttggag i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18326072 90 - 38779656 ATATGTATACCTGGACACATACATTCTAACAGCAATAATGCTCCTATTATATGATTCACTATTGGACAGAAGGAAAT-TCATTGGTTAGAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821729 50 + 98207768 -------------------AGAGTCCTCTTTG----------------------TCTTTCACTGGGGAGGAAGAATTCTCATTGTTTCAAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11441823 60 + 39895921 agaaatc-acctggat-------gatttccag----------------------tctttcattggatggatagagttttcattg-ctaaag i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 636706 60 - 6883506 agaaatc-acttggac-------ttctcctag----------------------tcct-cactggagagatggaattttcattggtgggag i dasNov3.JH568778 C 0 I 626 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16843058 336 + 47401472 I a score=127009.000000 s hg38.chr21_GL383578v2_alt 35908 15 + 63917 tggtaccctgacgct s panTro5.chr21 873418 15 + 33445071 tggtaccctgacgct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558067 15 + 46275980 tggtaccctgacact i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470165 15 - 13858734 tggtaccctgacgct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592381 15 + 32716333 tggtacacggatgct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664375 15 - 185818997 tggtaccctgacgct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472151 15 - 192294377 tggtaccctgacgct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917016 15 + 9440265 tggtaccctgacgct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656720 15 + 21915920 tggtaccctgacgct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301386 15 - 90373283 tggtaccctgacgct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629053 15 + 1337817 tggtaccctgacgct i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608292 15 - 3237654 tggtaccctgatgct i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140211 15 + 50472720 tagtaccccaatgca i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2488763 15 + 13128814 tagtaccccgatgca i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026297 15 - 14377064 tagtaccccagtgca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074020 15 + 9889416 tagtaccccgatgca i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18326162 15 - 38779656 TGATgtcctgcccca i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821779 11 + 98207768 TTAGGCTCAAA---- i mm10.chr16 C 0 C 0 s canFam3.chr31 11441883 15 + 39895921 tgatgctcttccccc i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16843058 336 + 47401472 I e dasNov3.JH568778 636766 626 - 6883506 I a score=2671363.000000 s hg38.chr21_GL383578v2_alt 35923 259 + 63917 aagctgtctctcttcacttagcgattgaggggatgataaaggggttttgcttat------ag-cttaGC-TC-TTAAGGACTACAAAGCTA---------------GGCTCTAGTA--------------------------------------Agggtcaagattgtgagcccatttgtgaaatcaag-----tcataag--tcacttttgccacta-tttga-agtcacaagatt-cccccttattc--aaaaagatatacgtaatatacagagataacaagaaaga----tttccaaaca-agattct-ataaacaagataatttaaacaagattc s panTro5.chr21 873433 259 + 33445071 aagctgtctctcttcacttagcaattgaggggatgataaaggggttttgcttat------ag-cttaGC-TC-TTAAGGACTACAAAGCTA---------------GGCTCTAGTA--------------------------------------Agggtcaagattgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaagatt-cccccttattc--aaaaagatatacgtactatacagagataacaagaaaga----tttccaaaca-agattct-ataaacaagataatttaaacaagattc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558082 259 + 46275980 aagctgtctctcttcacttagcgattgaggggatgataaaggggttttgcttat------ag-cttaGC-TC-TTAAGGACTACAAAGCTA---------------GGCTCTAGTA--------------------------------------Agggtcaagattgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaagatt-cccccttattc--aaaaagatatacgtactatacagagataacaagaaaga----tttccaaaca-agattct-ataaacaagataatttaaacaagattc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470180 259 - 13858734 aagctgtctctcttcacttagcgattgaggggatgataaaggggttttgcttat------ag-cttaGC-TC-TTAAGGACTACAAAGCTA---------------GGCTCTAGTA--------------------------------------Agggtcaagattgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaagatt-cccccttactc--aaaaagatgtacgtactatgcacagataacaagaaaga----tttccaaaca-agattct-ataaacaagataatttaaagaagattc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592396 245 + 32716333 aagcggtctctcttcacttagcgattgaggggatgataaaggggttttgcttat------ag-cttaGC-TC-TTAAGGACTACAAAGCTA---------------GGCTCTAGTA--------------------------------------Agggtcaagattgtgagcccatttgtgaaatcagt-----ttataag--tcacttttgccacta-tttga-agtcacaagatt-cccccttattc--aaaaagatatacgtactatatggagataacaagaaaga----tttccaaaca-agaatct-ataaac--------------aagattc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664390 245 - 185818997 aagctgtctctcttcacttagtcattgaggggatgatgaaggggttttgcttac------ag-cttagc-tc-ttaaggactaccaagcta---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttattc--aaaaagatatatgtactatatggagataacaagaaaga----tttctaaaca-aga---------------taatttaaacaagattc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472166 245 - 192294377 aagctgtctctcttcacttagtcattgaggggatgatgaaggggttttgcttac------ag-cttagc-tc-ttaaggactaccaagcca---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttattc--aaaaagatatatgtactatatggagataacaagaaaga----tttctaaaca-aga---------------taatttaaacaagattc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917031 245 + 9440265 aagctgtctctcttcacttagtcattgaggggatgatgaaggggttttgcttac------ag-cttagc-tc-ttaaggactaccaagcca---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttattc--aaaaagatatatgtactatatggagataacaagaaaga----tttctaaaca-aga---------------taatttaaacaagattc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656735 245 + 21915920 aagctgtctctcttcacttagtcattgaggggatgatgaaggggttttgcttac------ag-cttagc-tc-ttaaggactaccaagcta---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttgttc--aaaaagatatacgtactatacggagataatgagaaaga----tttctaaaca-aga---------------taatttaaacaagattc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301401 245 - 90373283 aagctgtctctgttcacttagccattgaggggatgataaaggggttttgcttac------ag-cttagc-tc-ttaaggactaccaagcta---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttattc--aaaaagatatacgtactctatggagataacaagaaaga----tttctaaaca-aga---------------taatttaaacaagattc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629068 245 + 1337817 aagctgtctctcttcacttagtcattgaggggatgaagaaggggttttgcttac------ag-cttagc-tc-ttaaggactaccaagcta---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccatttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttgttc--aaaaagatatacgtactatatggagataacgagaaaga----tttctaaaca-aga---------------taatttaaacaagattc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608307 244 - 3237654 aagctgtctctcttcacttagccattgagggaatgataaaggggttttgcttag------ag-cttagc-tc-ttaaggactaccaagcaa---------------ggctctagta--------------------------------------agggtcaagaccgtgagcccgtttgtgaaatcagg-----ttataag--tcacttttgccacta-tttga-agtcacaaaatt-cccccttattc--aaaaagatatacgtactatac-gagataacaagaaaga----tttctcaata-aga---------------taatttaaacaagattc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140226 258 + 50472720 aagctgtctctctttacttagcaattgaggggatgatacaggagttttgcttac------aa-cttaGC-TC-TTAAGGACCACCAAGCTA---------------GGCTCTAGTA--------------------------------------AGTGTAAAGAT--TGAACACATTTGTGAAATCAGG-----TTATAAG--TCACTTTTACCACAATTTTGA-AGTCTCAAGGTT-TTCCCTTATTC--AAAATGATACATGTACGATACAGAGATAACAAGAAAGA----TTTTCAAACA-AGATTTT-ATAAATAAGAGAATTTAAACAAGTTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2488778 257 + 13128814 aagctgtctctcttcacgtagcaattgaggggatgatagaggagttttgcttac------ga-tttagc-tc-ttaaggactaccaagcga---------------ggctctagta--------------------------------------agtgtaaagattgtgagcacatttgtgaaatcagg-----ttataag--tcacttttaccatgattttga-cgtctcaagatt-ttcccttattc--aaaaagatatatgtacgatacggagataac---aaaga----tttccaaaca-agatttt-ataaacaagagaatttaaacaagtttc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026312 260 - 14377064 aagctgtttctcttcacctagcaattgagggaatgatagaggagttttgcttat------aa-cttagc-tc-ttaaggactaccaagcTA---------------GGCTCTAGTA--------------------------------------AGTgtaaagattgtgagcacatttgtgaaatcagg-----ttataag--tcacttttaccacaattttga-agtcccaaggtt-ttcccttgttc--aagaagatatacgtacgaaacggagataacaagaaaga----tttccaaaca-agatttt-ataaacaggagaatttaaacaagtttc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074035 260 + 9889416 aagccgtctctcttcacttagcaattgaggggatgatagaggagttttgcttat------aa-cttaGC-TC-TTAAGGACTACTAAGCTA---------------GGCTCTAGTA--------------------------------------AGTgcaaagattgtgagcacatttgtgaaatcagg-----ttgtagg--tcacttttaccacaattttga-agtcacaagttt-ttcccttattc--aaaaagatatacttacgatatggaggtaacaaaaaaga----tttccaaaca-agatttt-ataaacaagagaatttaaacaagtttc i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18326177 271 - 38779656 gggctggctctcttcacttagcaactgacaaggtgacagaaagatcttgtgtactccaatac-ctgagcttt-ttagggactaccaggcta---------------gggcccagaa--------------------------------------agggTTCAGATGCTGAGACCATTTGTGAGACTCAG-----TTAAAAC--TCACTTTTTCCTTTA-TTTGATGGTCACACTATTGTCCCTTTATTCTTAAAAACACATACTTACTGAACAGAGCAAACAAGACAGA----TTTTCAATCA-ATATTGGAAGAAACAAGAGGCTTTAAGCAAGTGAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75821790 230 + 98207768 -------------------------------GATCACAGAGAGATATTGCCTAT------TGTCAAAGT-TT-TTAGGCATTTCTAGGCTACTGGTCTGTCTGTCTGTCTCTATTT--------------------------------------TGTAGCTACAT-----GAACATTTATGAAACT--G-----CTATAGT--TCACTTTTACTATTCCTTTGC-AATCACA-GATT-CTTCTGTATTC--AAAAGTATATGCTTGCCAAACGCAGA-AATGAGACAGG----TTTTCAAACT-TGGTTTCAATG-------TGATTTCAGCCTAGCCC i mm10.chr16 C 0 C 0 s canFam3.chr31 11441898 286 + 39895921 aagctggctctatccacttggcaatggagggcatgtcagagagatcttgcttac------ag-ttgagtatc-attgagactatcaggcta---------------gtgtccagtaa-gaagagggactattataattctttgttgctttccccagggtcaagattgtgagcctacttgtgaaatcaagtgaaatcaaaagtttcatttttgccattattttgc-aatcaccagatt-ctctcttattc--aaag----atacttaccaaacagaacaaacaag---ga----tttgcaaaca-aag-------------gggattttaagcaagtggt i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 637392 268 - 6883506 aagttggcactcttcatttggtgactgcggag----cagaggagtctcacctgc------ag-ctgagc-tctttagggactaccaagctt---------------gtgtccagtaaggaaaagaggctgttaggagtattcattatattctctagtgtcaagattgtgagcccacttgtgaaatcaag-----taatatt--tcacattttcta----ttttg-tataacaaggtt-ctccattatct----------------attaaataaaaagaacaactaagaagtttttccaaatataga---------------ggatttaagcaagtgat i dasNov3.JH568778 I 626 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16843058 336 + 47401472 I a score=1635537.000000 s hg38.chr21_GL383578v2_alt 36182 134 + 63917 atgaagatgttactc---attttc-ttggtccagg--tatacagcttatatt-t--caaaaca-atctataattgctttatcttaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAATAAAGACAACAGAAATG s panTro5.chr21 873692 137 + 33445071 atgcagatgttactcctcattttc-ttggtccagg--tatacagcttatatt-t--caaaaca-atctataattgctttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAATAAAGACAACAGAAATG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558341 137 + 46275980 atgcagatgttactcctcattttc-ttggtccagg--tatacagcttatatt-t--caaaaca-atctataattgctttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAATAAAGACAACAGAAATG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470439 134 - 13858734 atgaagatgttactc---attttc-ttggtccagg--tatacagcttatatg-t--caaaaca-atctataattgctttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAATAAAGACAACAGAAATG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592641 134 + 32716333 atgaagatgttactc---attttc-ttggtccagg--tatgcaacttatatt-t--caaaaca-atctataattgctttatcctaccttg---cttGTGGC-AAATTCCTCTTTTTTCTATCTTGAGAAAATAAAGACAACAGAAATG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664635 135 - 185818997 atgacgatgttgctc---attttc-ttggtccagg--tatacagcttatatt-t--caaaaaaaatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAACAAAGACAACAGAAATG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472411 135 - 192294377 atgacgatgttgctc---attttc-ttggtccagg--tatacagcttatatt-t--caaaaaaaatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAACAAAGACAACAGAAATG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917276 137 + 9440265 atgacgatgttgctc---attttc-ttggtccaggtatatacagcttatatt-t--caaaaaacatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAACAAAGACAACAGAAATG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5656980 135 + 21915920 atgacgatgttgctc---attttc-ttggtccagg--tatacagcttatatt-t--caaaaaaaatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAACAAAGACAACAGAAATG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301646 135 - 90373283 atgaggatgttgctc---attttc-ttggtccagg--tatacagcttatatt-t--caaaaaaaatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAACAAAGACAACAGAAATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629313 135 + 1337817 atgacgatgttgctc---attttc-ttggtccagg--tatacagcttatatt-t--caaaaaaaatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTAAGAAAACAAAGACAACAGAAATG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608551 137 - 3237654 atgaggatgttgctc---attttc-ttggtccagg--tatacagcttatatt-taaaaaaaaaaatctgtaattactttatcctaccttg---cttaTGGC-AAACTCCTCTTTTTTCTATCTTGAGAAAACAAAGACAATAGAAATG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140484 133 + 50472720 ATAAAGATATTTCTC---ATTTTC-TTGGTGCAGG--TATACAGCTTATATCAA--AAAAAA--ATCCATAATCACTTTATCCTA-CTTG---CTTACAGA-AAACTCCTCTTCTTTCTATCTTGAGACAATAAAGACAAAAGAAATG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2489035 131 + 13128814 atgaagatgttactc---attttc-ttggtgcagg--tatacagcttatatt-t--caaaaa--aTCTATAATCACTTTATCCTA-CTTG---CTTACAGC-AAGCTCCTCTTC-TTCTATCTTGAGACAATGAAGACAAAGGAAATG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026572 132 - 14377064 atgaagatgttactc---attttc-ttggtgcggg--tatacagcttatatt-t--caaaaa--aTCTATAATCACTTTATCCTA-CTTG---CTTATGGC-AAACTCCTCTTCTTTCTATCTTGAGACAATAAAGACAAAAGAAATG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074295 132 + 9889416 atgaagatgttactc---attttc-ttggtgcagg--tatacagcttatatt-t--caaaaa--aTCTATAAGCACTTTATCCTA-CTTG---CTTACGGC-AAACTCCTCTTCTTTCTATCTTGAGACAATAAAGACAAAAGAAATG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16843394 132 + 47401472 atgaaaatgatactc---attttc-ttagtacagg--gagacagcttatatt-t--cCCCAA--ATCTATAACTGCCTTATCCTACCTTG---G-TATGAC-AAACTTGTCTTATATCTACCTTGAGAAAATAAAGACAACAAAAATG i micMur3.chr31 I 336 I 23 s otoGar3.GL873528 18326448 130 - 38779656 CTGAAGATGCTACTC---CTTTTC-TGAGGGCAGG--CAGAC--CTCAAGTT-T--CCCTAA--ATCTCTAACTGCCTTATCCTATTTTG---C-TATGAC-ACACTCATCTTATATCTGTCCAGAGAAAGTGAAGATAATGAAAATG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75822020 125 + 98207768 -TAAAAAGGCTAC-----ATTTCCTTTAGAACAGT--AACATAGATTATATT-T--CTACAC--ATCTGGAACTACTGTGTCTTT-CTAGAGATTTGTAACAAAACTTTTCTTCCTTCAGCTATGAGGGGGGAAAGGTG--------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11442184 132 + 39895921 atgaagatactgctg---attttc-ttagtgcagg--gatacaactcatatt-t--cCCCAA--ATCCATAATTG-TTTGTCAGATTTTG---CTAGTAAC-AAAGTCCTCTTTCATCTCTCTTGATAGAATAAAGACTCAAGAACTG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 637660 131 - 6883506 acaaagatagtattg---attttc-tcaatgcagg--tatgcaacctatatt-t--cCAATA--ACCTATAACTACTTTCTGCTATATTG---CTTACAAC-AAAGCCCTCTTCCATCTAAATTGAGAAAATAAAGAGA--AAACATG i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I a score=610660.000000 s hg38.chr21_GL383578v2_alt 36316 64 + 63917 TCCTAGAACTatttatt-taatttaattaatcaaatttaaCTCTTATAAGA------TACCTAAGGTTACA s panTro5.chr21 873829 64 + 33445071 TCCTAGAACTatttatt-taatttaattaatcaaatttaaCTCTTATAAGA------TACCTAAGGTTACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558478 64 + 46275980 TCCTAGAACTatttatt-taatttaattaatcaaatttaaCTCTTATAAGA------TACCTAAGGTTACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470573 64 - 13858734 TCCTAGAACTatttatt-taatttaattaatcaaatttaaCTCTTATAAGA------TACCTAAGGTTACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592775 64 + 32716333 TCCTAGAACAATTTATT-TAAAAAAGTTTCTCAAATTTAATTCTTATAAGA------TACCTAAGATTACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664770 65 - 185818997 TCCTAGAACTATTTATTAAAAAACAGTTTCTCAAATTTTATTCTTATAAGA------TACTTAAGGTTGCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472546 65 - 192294377 TCCTAGAACTATTTATTAAAAAACAGTTTCTCAAATTTTATTCTTATAAGA------TACTTAAGGTTGCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917413 65 + 9440265 TCCTAGAACTATTTATTAAAAAACAGTTTCTCAAATTTTATTCTTATAAGA------TACTTAAGGTTGCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5657115 64 + 21915920 TCCTAGAACTATTTATT-AAAAACAGTTTCTCAAATTTTATTCTTATAAGA------TACTTAAGGTTGCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301781 64 - 90373283 TCCTAGAACTATTTATT-AAAAACAGTTTTTCAAATTTTATTCTTATAAGA------TACTTAAGGTTGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629448 64 + 1337817 TCCTAGAACTATTTGTT-AAAAACAGTTTCTCAAATTTTATTCTTATAAGA------TACTGAAGGTTGCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608688 64 - 3237654 TCCCAGAAGTATTTATT-AAAAACAGTTTCTCAAATTTTATTCTTATAAGA------TACTTAAGGTTGCA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140617 64 + 50472720 CCCTCAAACTATTTATG-AAGAACTGTTTCTCAAAGTTAATTCTCATAACA------TACCTAAGGTTACA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2489166 64 + 13128814 CCCTCAAACTATTTATG-AAGAACCATTTCTCAAAGTTAATTCTTATAACA------TACCTATGGTTACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026704 58 - 14377064 CC------CCATTTGTG-AAGAACCGTTTCTCAAAGTTAATTCTAATAACA------TACCTAAGGTCACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074427 64 + 9889416 CCCTCAAACTATTTATG-AAGAACTGTTTCTCAAAGTTAATTCTTATAACA------TACCTAAGGTTACA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18326578 62 - 38779656 -TCTACAA-TAGTTATA-AAGAACATTTTAATAAATTTCATTCTTATGACA------TACCTAAGGTTGCA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75822145 68 + 98207768 -CCTATAATAATTTAA--AGATATAGCTCATCAAATGTAACTCAGATGATAATTTATAATTTGCAGTTATA i mm10.chr16 C 0 C 0 s canFam3.chr31 11442316 62 + 39895921 -CCCATAATAATTCAT--AAGAACGTTTTCTCAAATTTTATTCTTAtggcc------tacctaaaattaca i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 637791 63 - 6883506 -TTCATAACAATTTAAA-GAGAACGTTTTAGTAAATTTCATTTTTACAaca------tatctaagattaca i dasNov3.JH568778 C 0 I 2 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16843526 23 + 47401472 I a score=4064398.000000 s hg38.chr21_GL383578v2_alt 36380 381 + 63917 TAAT--ATAt----t----tgcttagagtgccgtaacaaagtaccacagactg-ggt----------------ggtttaaacggcagaaactcgttttctcacagttctgcaggctaggggttcgagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtgttgtagatggctgtgttct---------c--------acac--gatcttc---------cctctgtacatgtttgtatcctaa---catcttcttaaa---aggacaccattcatattggattagaacccatcctaatgacctcatgttaattcaattattctctttaaaaaccttacctccacataaagttatattctgaggtgcaagaggcaaggacttcaacatatgaatcctggg---ggg--agacaattaagtccatTGCACGTA s panTro5.chr21 873893 383 + 33445071 TAAT--ATAt----t----tgcttagagtgccgtaacaaagtaccacagactg-ggt----------------ggtttaaacagcagaaattcgttttctcacagttctgcaggctagaggttcgagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtgttgtagatggctgtgttct---------c--------acacacgatcttc---------cctctgtacatgtttgtatcctaa---catcttcttaaa---aggacaccattcatattggattagaacccatcctaatgacctcatgttaattcaattattctctttaaaaaccttacctccacataaagtcatattctgaggtgcaagaggcaaggacttcaacatatgaattctggg---ggg--agacaattaagtccatTGCACGTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558542 383 + 46275980 TAAT--ATAt----t----tgcttagagtgccgtaacaaagtaccacagactg-ggt----------------ggtttaaacagcagaaattcgttttctcacagttctgcaggctagaggttcgagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtgttgtagatggctgtgttct---------c--------acacacgatcttc---------cctctgtacatgtttgtatcctaa---catcttcttaaa---aggacaccattcatattggattagaacccatcctaatgacctcatgttaattcaattattctctttaaaaaccttacctccacataaagtcatattctgaggtgcaagaggcaaggacttcaacatatgaattctggg---ggg--agacaattaagtccatTGcacata i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 470637 380 - 13858734 TAAT--ATAt----t----tgcttagagtgccataacaaagtaccacagactg-ggt----------------ggtttaaacagcagaaattcgttttctcacagttctgcaggctagaggttcgagatcaaggtgttggcagagttgattccattcagaggcttctctt--ttgtcttgtagatggctgtgttct---------c--------acac--gatcttc---------cctctgtacatgtttgtatcctaa---catcttcttaaa---aggacaccattcatattgggttagaacccatcctaatgacctcatgttaattcaattattctctttaaaaaccttacctccacataaagtcatgttctgaggtgcaagaggcaaggacttcaacatatgaattctggg---ggg--agacaattaagtccatTGcacgta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1592839 381 + 32716333 TAAT--ATAt----t----tgcttagagtgccataacaaagtaccacagacta-ggt----------------ggtttaaacagcagaaattcatttcctcacagttctgcaggctagaggttcaagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtagatggctgtgttct---------a--------acat--gatcttc---------cctctgcacatgtttgtatcctaa---tatcttcctaaa---aagacaccattcatattggattagaacccatcctaaagacctcatgttaattcaattattctctttaaaaaccttacctccacataaagtcacattctgaggtgcaaaaggcaaggacttcaacatataaattctggg---gga--agacaattaagtccattacaCACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152664835 381 - 185818997 TAAT--ATAt----t----tgtttagagtgccacaacgaagtatcacagacta-ggt----------------ggtttaaacagcagaaattcattttctcgcagttctgcaggctagaggttcaagatcagggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtagatgactgtgttct---------c--------acgt--gatcttc---------cctccgtacatgtttgtatcctaa---tatcttcttaaa---aggacaccactcatattggattagaacccatcctgatgacctcatgttaattcaattattctctttaaaaaccttatctccacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattctgtg---ggg--aaacaattaagcccgttacaTATA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472611 381 - 192294377 TAAT--ATAt----t----tgtttagagtgccacaacgaagtatcacagacta-ggt----------------ggtttaaacagcagaaattcattttctcgcagttctgcaggctagaggttcaagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtagatgactgtgttct---------c--------acgt--gatcttc---------cctccgtacatgtttgtatcctaa---tatcttcttaaa---aggacaccactcatattggattagaacccatcctgatgacctcatgttaattcaattattctctttaaaaaccttatctccacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattctgtg---ggg--aaacaattaagcccgttacaTATA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917478 381 + 9440265 TAAT--ATAt----t----tgtttagagtgccacaacgaagtatcacagacta-ggt----------------ggtttaaacagcagaaattcattttctcgcagttctgcaggctagaggttcgagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtagatgactgtgttct---------c--------acgt--gatcttc---------cctccgtacatgtttgtatcctaa---tatcttcttaaa---aggacaccactcatattggattagaacccatcctgatgacctcatgttaattcaattattctctttaaaaaccttatctccacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattctgtg---ggg--aaacaattaagcccgttacaTATA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5657179 376 + 21915920 TAAt--gtat----t----tgtttagagtgccacaacgaagtatcacagacta-ggt----------------agtttaaacagcagaaa-----tttctcgcagttctgcaggctagaggttcaagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtagatgactgtgttct---------c--------acat--gatcttc---------tctccgtacatgtttgtatcctga---tatcttcttaaa---aggacaccactcatattggattagaacccatcctgatgacctcatgttaattcaattattctctttaaaaaccttatctctacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattctggg---ggg--aaacagttaagcccgttacaTATA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12301845 381 - 90373283 TAAT--ATAt----t----tgtttagagtgccacaacgaagtatcacagacta-ggt----------------ggtttaaacagcagaaattcattttctcacagttctgcaggctagaggttcaagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtagatgactgtgttct---------c--------acat--gatcttc---------cctccgtacatgtttgtgtcctaa---tatcttcttaaa---aggacaccactcatatcggattagaactcatcctgatgacctcatgttaattcaattattctctttaaaaaccttatctccacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattctggt---ggg--aaacaatgaagcccattacaTATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629512 381 + 1337817 TAAt--gtat----t----tgtttagagtgccacaacgaagtatcacagacta-ggt----------------ggtttaaacagcagaaattcattttctcgcagttctgcaggctagaggttcaagatcaaggtgttggcagagttgattccattcagaggcttctctt-cttgtcttgtacatgactgtgttct---------c--------acat--gatcttc---------cctccgtacatgtttgtatcctga---tatcttcttaaa---aggacaccactcatattggattagaacccatcctggtgacctcatgttaattcaattattctctttaaaaactttatctacacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattctggg---ggg--aaacaattaagcccgttacaTATA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 608752 383 - 3237654 TAAT--ATAt----t----tgtttagagtgccacaacaaagtaccacagacta-ggt----------------ggtttaaacagcagaaattcattttctcacagttctgcaggctagagtttcaagatcaaggtgctggcagagttgattccattcagaggcttctctt-cttgtcttgtagatgaccgtgttct---------c--------acat--gatcttc---------cctccgtacatgtttgtatactaa---tatcttcttaaa---aggacaccactcatattggattagaacccatcctgatgacctcatgttaattcaattattctctttaaaaaccttatctccacataaagtcacattctgaggtgcaagaggcaaggacttcaacatatgaattcttgg---gggaaaaacaattaagcccattacaCATA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19140681 378 + 50472720 TAAT--ATAt----t----tgcttagagtgccgtaacaatgtaccacagacta-gat----------------gatcttaacagcagaaattaattttctcacagttctgcaggctagaggttcaagatcaaggtgttgc-agagttgattccattcagaggcttctctt-cttgtcttgcagatggctgtgttct---------c--------acat--gatcttt---------cctctggacatatttgtgttctaa---tttcttcttata---aggacattactcatattggattagaacccatactgatggcctcatgttaattcagtta-tcattttaaaaaccttatcttcacataaagtcacattctgaggtgcaagaggcacagacttcaacatatgaattctgtg---gg---acacaatgaagcccattacaCATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2489230 379 + 13128814 TAAA--ATAt----t----tgcttagagtgcaataacaatgtaccatagacta-ggt----------------gatctaaacagcagaaattaactttctcacagttatgcaggctagaggttcaagatcaaggtgttgctagagttgattccattcagaggcttctctt-cttgtcttgtagatggctgtgttct---------c--------atat--gatcttc---------cctctggacatatctgtgtcctaa---tttcttcttata---aggacattattcatactggattagaacccatcctgatggtctcatgttaactcagtta-tcattttaaaaaacttatcttcacataaagtcacattctgaggtgcaagaggcacagacttcaacatattaattctgtg---gg---acgcaatgaagcccattacaCACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7026762 379 - 14377064 TAAT--ATAt----t----tgcttagagtgctgtaacaatgtaccacagacta-gtt----------------gatctaaacagcagaaattaattttctcacagttctgcaggctagaggttcaagatcaaggtgttgccagagttgattccattcagaagcttctctt-cttgtcttgtggatggctgtgttct---------c--------acat--catcttc---------cctctggacatatttgcgtcctaa---tttcttcttata---aggacattactcgtattggattagaacccatcctggtggcctcatgttaactcagtta-tcatttaaaaaaccttatctttacataaaatcacattctgaggtgcaagaggcacagacttcaacatatgaattctgtg---gg---acacaatgaagcccattacaCATA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074491 379 + 9889416 TAAT--ATAt----t----tgcttagagtgctgtaacaatgtaccacagacta-ggt----------------gatctaaacagcagaaattaattttctcatagttctgcagtctagaggttcaagatcaaggtgttgccagagtcgattccattcagaggcttctctt-ctcgtcttgtagatggctgtgttct---------c--------acat--gatcttc---------cctctggacatatttgtgtcctaa---tttcttcttata---aggacattactcagattagattagaacccatcctgatggcctcatgttaattcagtta-tcattttaaaaaccttatcttcacataaagtcacattctgaggtgcaagaggcacagacttcaacacatgaattctgtg---gg---acacaatgaagcccattacaCATA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18326640 317 - 38779656 TAAT--ATCttagct----tgctcagactactattaccaagtgccacagactagggt----------------ggcttaaataatggaaatttattctctcacagttatgaaggccagaagactgaaatcaaggtctttgcagggttgatttcattttgaggcctctcct-cctggcttagagatggctgcgttcttcccatctcc--------atgt--gatcttc---------cctct-tatagatctgtgtcctaa---tcttctcttgtatagaagaaggcagtcacattggattaaggctcgctctaatgatctccttttaattta--tgacctcttacaaaccct------------------------------------------------------------------------aG--AATAAAGTCCA--------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75822213 338 + 98207768 TAATTAGCag----t----ttcctgagctattacaataaggtaatacagacta-agtccccccccccgcccccgccccaagtaacagaaat--gtattcttacagttctacaggctaaatataagggatca------tagcacagt-------------------------------ttatagatggatgctttct---------ctgacccatccat--ggtcttc---------ctaccttacctgtgt---tcccat---ttttttcttccc---a------------------atctggctgcacccagctgcacttatttta------ctgttttatttacaggccctaattctagataaagctacattctgaagtattagacgtgaagaattcaacaaatgagtt-tgaa---gga--aaataatcag--ccaata-aGGCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11442378 373 + 39895921 tagt--atat----tagtctgcttggactgtcataacaaagtacc-cagacag-tat----------------tgctcaggcaacacaaatttattttctcacagttctggaggctagaagtcccaggctgaggtgtcggcaagtttggttt-attctgagacttcttttccttggttcgtaggtggttttgttct---------t--------tctg--ggtcttcacagtctatcttctctatgtgtttgtgttctgaactcctcttcttata---tagacatcagtaatactggattagtgttcaccctaatgtcttcattttaacttactta-cctctttaaggaccctacctccaagtaccgtc-------------------------acttcaaaaaatgaatttgagggaaggg--acacagttcagcctgcaacacata i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16843526 23 + 47401472 I e dasNov3.JH568778 637854 2 - 6883506 I a score=671132.000000 s hg38.chr21_GL383578v2_alt 36761 74 + 63917 GGTGGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTTtttttctgact-caaaga-ccagat-tttttcactggacg s panTro5.chr21 874276 73 + 33445071 GGTGGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaaga-ccagat-tttttcactggacg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558925 72 + 46275980 ggtggtgaattaagggtctgaggtttaaacaatg----------------tttttt--ctgact-caaaga-ccagat-tttttcactggacg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471017 72 - 13858734 ggtagtgaattaagggtctgaggtttaaacaatg----------------ttttttt-ctgact-caaaga-ccagat-tttttcactggac- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1593220 68 + 32716333 GGGAGTGAATTAAGGG-----GGATTAAACAATG----------------TTttttt-ctgact-caaaga-ccagtt-tttttcactggaca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152665216 73 - 185818997 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaaga-ccagat-tttttcactggacc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159472992 73 - 192294377 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTTTTTT-CTGACT-CAAAGA-CCAGAT-TTTTTCACTGGACC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917859 73 + 9440265 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaaga-ccagat-tttttcactggacc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5657555 73 + 21915920 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaaga-ccagat-tttttcactggacc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12302226 73 - 90373283 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaagc-ccagat-tttttcactggacc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629893 73 + 1337817 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaaga-ccagat-tttttcactagacc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609135 73 - 3237654 GGTAGTGAATTAAGGGTCTGAGGTTTAAACAATG----------------TTttttt-ctgact-caaaga-ccagat-tttttcactggacc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141059 76 + 50472720 GATAGTGAAAGAAGGGTCTTAAGTTTAAACAATGT--------------TTTTTTTT-CTGACT-CGCAGG-CCAGATTTTTTTCACCCGACC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2489609 72 + 13128814 AGTAGTGAAATAAGGGTCTGAGGTT---ACAATG---------------GTTTTTTT-CTGACT-CGCAGG-CCAGATGTTTTTCACCCGACC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027141 90 - 14377064 GGTAGTGAAATAAGGATCTGAGGTTTAAACAAtgttttgttttgttttgttttgttt-GTGACT-CGCAGG-CCAGATTTTTTTCACCTGACC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074870 75 + 9889416 GGTAGTGAAATAAGGGTCTGAGGTTTAAACAATG---------------TTTTTTTT-CTGACT-CGCAGG-CCAGATTTTTTTCACCCGACC i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18326957 20 - 38779656 ------GAATT---------------------TA----------------TTTTCAC-CCCACC----------------------------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75822551 72 + 98207768 GCTAGTAAATGGAGTTTCTTCTGTTTAAACGATG----------------GCTGTTT--TGTCT-CTAAAG-TCCAGC-TATCCCCCCACACC i mm10.chr16 C 0 C 0 s canFam3.chr31 11442751 72 + 39895921 ggtagtgaattaagg-tttagagtttaaataatg----------------ggtttt--ctgactccaaagt-ccagaa-ttttctaccacacc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 637856 72 - 6883506 gatagagaattaaagatttgaggtttaaataatg------------------ttttc-ctgact-ccaatatttagag-ttttctaccatacc i dasNov3.JH568778 I 2 C 0 e proCoq1.NW_012147997v1 1203672 1953 - 2312742 I e micMur3.chr31 16843526 23 + 47401472 I a score=265146.000000 s hg38.chr21_GL383578v2_alt 36835 18 + 63917 aaagctgcctcTATGTTG s panTro5.chr21 874349 18 + 33445071 aaagctgcctcTATGTTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14558997 18 + 46275980 aaagctgcctcTATGTTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471089 18 - 13858734 aaagctgcctcTATGTTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1593288 18 + 32716333 aaagctgcctcTATGTTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152665289 18 - 185818997 aaagctgcttcTATGTTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473065 18 - 192294377 AAAGCTGCTTCTATGTTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917932 18 + 9440265 aaagctgcttcTATGTTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5657628 18 + 21915920 aaagctgcctcTATGTTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12302299 18 - 90373283 aaagctgcctcTATGTTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629966 18 + 1337817 aaagctgcctcTATGTTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609208 18 - 3237654 aaagctgcctcTATGTTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141135 18 + 50472720 AAAGCTGCCTCTCTGTTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2489681 18 + 13128814 AAAGCTGCCTCTCTGTTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027231 18 - 14377064 AAAGCTGCCTCTCTGTTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074945 18 + 9889416 AAAGCTGCCTCTCTGTTA i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1205625 18 - 2312742 aaagctgcttctgtgTTA i proCoq1.NW_012147997v1 I 1953 C 0 s otoGar3.GL873528 18326977 18 - 38779656 AAAGCTGCCTCTATGCCA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75822623 14 + 98207768 AAA----CCTTCCTGTTC i mm10.chr16 C 0 I 2 s canFam3.chr31 11442823 18 + 39895921 caagctgcctctgtgGCA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 637928 18 - 6883506 aaagctgcctcTGGGCCA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16843526 23 + 47401472 I a score=8367932.000000 s hg38.chr21_GL383578v2_alt 36853 543 + 63917 TTAATTCTCTTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCTTCCTCTCTTCAGAAGGtggagtagatgaactataaggataagaggtggcaatccgtaagtaaagtgattgaaatgcagattatga------------------------------------aagttgtatcattattagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAAAT---------------TG-TTTGCCACTAACTG-------------------CTAGACTTATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTATCTAGTcattgttttatttgttcttcaccataa-cctgttaggtggataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgtctcCCCATTCAATGTACCC s panTro5.chr21 874367 542 + 33445071 TTAATTCTCTTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCTTCCTCTCTTCAGAAGGtggagtggatgaactgtaaggataagaggtggcaatccgtaagtaaagtgattgaaatgcagattatga------------------------------------aagttgtatcattattagtC---------------TGGAAA--------------GAGA--CATTTA-----TTGAATGAATATAAAT---------------TG-TTTGCCACTAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTATCTAGTcattgttttatttgttcttcaccataa-cctgttaggtggataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgtctcCCCATTCAAGGTACCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559015 542 + 46275980 TTAATTCTCTTATCCACTGCCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCTTCCTCTCTTCAGAAGGtggagtggatgaactgtaaggataagaggtggcaatctgtaagtaaagtgattgaaatgcagattatga------------------------------------aagttgtatcattattagtC---------------TGGAAA--------------GAGA--CATTTA-----TTGAATGAATATAAAT---------------TG-TTTGCCACTAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTATCTAGTcattgttttatttgttcttcaccataa-cctgttaggtggataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgtctcCCCATTCAAGGTACCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471107 543 - 13858734 TTAATTCTCTTCTCCACTGTCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCTTCCTCTCTTCAGAAGGtggagtggatgaactgtaaggataagaggtggcaatctgtaagtaaagtgatggaaatgcagattatga------------------------------------aagttgtaccattattagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAAAT---------------TG-TTTGCCACTAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTATCTAGTcattgttttatttgttcttcaccataa-cctgttaagtggataaagttcc---------------tttatttttatcattttagagaataaggagttgaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtgcagtgatcttttgcctgtacttgctgtctcCCCATTCAATGTACCC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1593306 542 + 32716333 TTAATTCTCTTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCGAGGTGGAGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCTTCCTCTCTTCAGAAGGtggagtggatgaactgtaaggataagaggtggcaatcagtaagtaaaatgattgaaatgcagattatga------------------------------------aagttgcatcattattagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAACGAATATAAAT---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTATCTAGTcattgtcttatttgttcttcaccataa-cctgttaggtggataaagttcc---------------ttcatttttatcattttagagaataaggagtagaagctcagagggtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcgtttgattcagagtacagtgatcttttgcctgtacttgctgtct-cCCATTCAATGTACCC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152665307 543 - 185818997 TTAATTCTCTTCTCCACTGCCTATATTCCATATCAGTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGTTAGTAAGATTTTGAAGAAATT-AAAGTTCTTCCTGTCTTCAGAAGGtggagtggatgaactgtaaggatgagaggtggtaataaataagtaaaatgattgaaatgcagattatga------------------------------------aagttgtataatttttagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAGAC---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTACGTAGTcattgttttatttgttcttcaccataa-cctgttaggttgataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggacttcaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgtctcCCCATTCAATGTACCC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473083 543 - 192294377 TTAATTCTCTTCTCCACTGCCTATATTCCATATCAGTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGTTAGTAAGATTTTGAAGAAATT-AAAGTTCTTCCTGTCTTCAGAAGGtggagtggatgaactgtaaggatgagaggtggtaatcaataagtaaaatgattgaaatgcagattatga------------------------------------aagttgtataatttttagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAGAC---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTACGTAGTcattgttttatttgttcttcaccataa-cctgttaggttgataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggacttcaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgtctcCCCATTCAATGTACCC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5917950 543 + 9440265 TTAATTCTCTTCTCCACTGCCTATATTCCATATCAGTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGTTAGTAAGATTTTGAAGAAATT-AAAGTTCTTCCTGTCTTCAGAAGGtggagtggatgaactgtaaggatgagaggtggtaatcaataagtaaaattattgaaatgcagattatga------------------------------------aagttgtataatttttagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAGAC---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTACGTAGTcattgttttatttgttcttcaccataa-cctgttaggttgataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggacttcaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgtctcCCCATTCAATGTACCC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5657646 542 + 21915920 TTAATTCTCTTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACTTCCCACCATCCCAAGGTGGAGCTAGTTGTTAGTAAGATTTTGAAGAAATT-AAAGTCCTT-CTGTCTTCAGAAGGtggagtagataaactataaggatgagaggtggtaatcagtaagtaaaatgattaaaatgcagattatga------------------------------------aagttgtataatttttagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAGAC---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTGGATCTACGTAGTcattgttttatttgttcttcaccataa-cctgttaggttgataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaactcatttcttttgattcagagtacagtgatcttttgcctgtacttgctatctcCCCATTCAATGTACCC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12302317 543 - 90373283 TTAATTCTCTTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCAAGGTAGAGCTAGTTGTTAGTAAGATTTTGAAGAAATT-AAAGTCCTTCCTGTCTTCAGAAGGtggagtagatgaactctaaggatgagaggtggtaatcagtaagtaaaatgattgaaatgcagattatga------------------------------------aagttgtataatttttagtC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAGAC---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTACGTAGTcattgttttatttgttcttcaccataa-cctgttaggttgataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtacagtgctcttttgcctgtacttgctatctcCCCATTCAATGTACCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 629984 542 + 1337817 TTAATTCTATTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACTTCCCACCATCCCAAGGTGGAGCTGGTTGTTAGTAAGATTTTGAAGAAATT-AAAGTCCTT-CTGTCTTCAGAAGGtggagtagataaactatgaggatgagaggtggtaatcagtaagtaaaatgattaaaatgcagattatga------------------------------------aagttgtataatttttagtC---------------TGGAAA-------------AGAGA--TATTTA-----TTGAATGAATATAGAC---------------TG-TTTGCCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTGGGTCTACGTAGTcattgttttatttgttcttcaccataa-cctgttaggttgataaagttcc---------------tttatttttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctatctcCCCATTCAATGTACCC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609226 543 - 3237654 TTAATTCTCTTCTCCACTGCCTATATTCCATATCATTAAGCAACTTCACCTCCCACCATCCCAAGGTGGAGCTAGTTGTTAGTAAGATTTTGATGAAATT-AAAGTCCTTCCTGTCTTCAGAAGGtggagtggatgaactgtaaggatgagaggtggtaatcagtaagtaaaatgattgaaatgcagattatga------------------------------------aagTTGTATAATTTTTACTC---------------TGGAAA-------------AGAGA--CATTTA-----TTGAATGAATATAGAC---------------TG-TTTCCCAGTAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACTA-GTGAGATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTACGTAGTcattgttttatttgttcttcaccataa-cctgttacgttgataaagttcc---------------tttatttttatcattttagagaataaggagtggaagctcagagagtttgtgtaacttgct---caagtagtggaactaggactccaacccatttcttttgattcagagtacagtgatcttttacctgtacttgctgtctcCCCATTCAATGTACCC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141153 507 + 50472720 TTAATTCTCTTCTACAGTGCCTTCATTCCATATCACTAAGCAACTTCACTTCC--CCgtcccaaggtggagctagttgctagtaagattct-----------------------------gaagatggactggatgaactgtaaggataagaggtggaagtcagtaagtaaaatgatcgaaattcagattttga------------------------------------aggttgtataattattagtc---------------tgaaaa-------------agaga--cattta-----ttgaatgaacatggAT---------------TG-TTTGTCAATAACTG-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACCA-GTGAAATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTACGTAGTcattgttttatttgttcttcac-------ctggtaggtggataaagttcc---------------tttacctttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactgggactccaatccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgccGCCCCATTCAATGTACCC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2489699 535 + 13128814 TTAATTCTCTTCTGCATTGCCTTCATTCCATATCACTAAGCAACTTCACTTCC--CCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTCTGAAGAAATT-AAAGTCCTTCCTCTCTTCAGAAGATGGACCAGAtgaactgtaaggataagaggtggaagtcagtaagtaaaatgatcgcaattcagattatga------------------------------------aggttgtataattattagtC---------------TGAAAA-------------AGAGA--CGTTTA-----TTGAATGAACATGCAT---------------AG-TTTGTCAATAACTG-------------------CTAGATTAACT-GAATTCTA----------------------------------------------------------------------CTCAACCA-GTGAAATCTAGTTTAAGGGCAAAACAATAGAAAGTCCCCAGGTCTATGTAGTcattgttttatttgttcttcaccataa-actgttaggtggataaagtt---------------------cctttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactgggactccaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgccGCCCCATTCAACGTACCC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027249 541 - 14377064 TTAATTCTCTTCTACACTGCCTTCATTCCATATCACTAAGCAACTTCACTTCC--CCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCGTCCTCTCTTCAGAAGATGGACTggatgaactgtaaggataagaggtggaagtcagtaagtaaaatgattgaaattcagattatga------------------------------------aggttgtataattatttgtc---------------tgaaaa-------------agaga--cattta-----ttgaatgaacatggAT---------------TG-TTTGTCAATAACTA-------------------CTAGATTAATT-GAATTCTA----------------------------------------------------------------------CTCAACCA-GTGAAATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTTTGTAGTcattgttttatttgttcttcaccataa-cctgttaggtggttaaagttcc---------------tttatctttatcattttagagaataaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactgggactccaacccatttcttttgattcacagtacagtgatcttttccctgtacttgctgcTGCCCCATTCAGTGTACCC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6074963 539 + 9889416 TTAATTCTCTTCTACACTGCCTTCATTCCATATTACTAAGCAATTTCACTTCC--CCATCCCAAGGTGGAGCTAGTTGCTAGTAAGATTCTGAAGAAATG-AAAGTCCTTCCTCTCTTCAGAAGAtggaatggatgaactgtaaggataagaggtgtaagtcagtaagtaaaatgattgaaattcagattatga------------------------------------aggttgtataaatattagtc---------------tgaaaa---------------aga--cgttta-----ttgaatgaacatggAT---------------TG-TTTGTCAATAACTG-------------------CTAGATAAATC-GAATTCTA----------------------------------------------------------------------CTCAACGA-GTGAAATCTAGTTTAAGGGGAAAACAATAGAAAGTCCCTAGGTCTATGTAGTGattgttttatttgttcttcaccataa-cctgttaggtggataaagttcc---------------tttatctttatcattttagagaatcaggagtagaagctcagagagtttgtgtaacttgct---caagtagtggaactgggactccaacccatttcttttgattcagagtacagtgatcttttgcctgtacttgctgccGCCCCATTCAAGGTACCC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16843549 543 + 47401472 TTAATTATCTTCCCCACTACCTTCATTCCATCTCATTAAGCAGCTCTACTTGCCACCATCTCAAGGTCCTGCTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCTTTTTCTCTTGAGAAGATGGTGTAGACAAACTATAATGAAAAGAGGTGA----CAGGGAGTGGAATGATTGAAATGCAAATTATAA------------------------------------ACGTTGTACGATGAGTAGTC---------------TGTAAA-------------AAAAAATTGGTTA-----TTGAATGAACAGGGAT---------------TA-TTTGCTAATAACTG-------------------CCAGATTAATTGGAATTCTT----------------------------------------------------------------------TTCAACTA-GTGAAATTTAGTTTAAGGGGAAAACAAGAGAGAATCCCTAGGTCTATCTAGTCGTCCtctcatttgttcttcactgtaaccctgttaggtgaacaaagtttc---------------tttatttttatcattttagagaataaggggttaaagctcaaagggtttgtgtaacttgcc---caagtagtggaactaggactccaacccacttcttttgattctgagtacagtgatcttttgcttgtactggctgcctcCCCATTCAGAGTACCC i micMur3.chr31 I 23 C 0 s proCoq1.NW_012147997v1 1205643 534 - 2312742 TTAATTCTCTTCTCCACTACCTTCATTCCATCTCATTAAGCAGCTCCACTTGCCACCATCCCAAGGTTCTGGTAGTTGCTAGTAAGATTTTGAAGAAATT-AAAGTCCT-----TCTTGAGAAGATGGTGTAGACAAGATGTAAGGAAAAGAGCTGA----CAGGGAGTGAAATGATTGAAATGCAAATTATAA------------------------------------AC---GTACGATTAGTAGTC---------------TGT-AA-------------AAAAAATTAGTTA-----TTGAATGAACAGGGAT---------------TA-TTTGCAAATAACTG-------------------CCAGATTAATTGGAATTCTT----------------------------------------------------------------------TTCAACTA-GTGAAATTTAGTTTAAGGGGAAAACAAGAGAGAATCCCTAGGTCTATCTAGTAGTCGtctcatttgttcttcactgtaaccctgctaggtgaacaaagtttc---------------tttatttttatccttttagagaataaggggttaaagctcaaagggtttgtgtaacttgcc---caagtagtggaactaggactccaacccacttcttttgattctgagtacagtgatcttttgcttgtactggctgcctcCCCATTCAGAGTACCC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18326995 527 - 38779656 TTAA-TCTCGTCTCTACTACCTTCATCCCATCTCACGAAGCAGCTCCATTTCCCATTGTCCTAAGGTCCTGCTGGTTGCTAGTAAGATTTTGAAGAAACT-AAAATCCTTCTCCTCTTA------------AGACAAACTGTAAGGAAAAGAGGTGA----CAAGGATTGAAATAATTGGAGTGCAAATTATAA------------------------------------ATATTGTACTATTTTTAGTC---------------TGG-AA-------------AAAGA--TAGTTA-----TTGAATGCAAAGGGAT---------------TATTTTGCAAATAACTG-------------------CCAGACTAACTGGGATTCTT----------------------------------------------------------------------TTCAACTA-GTGAGACTCAGTTTAAGGGGAAAGCAAGAGAGAATCCCTAGGACTGTCTGTTCCttgtttcatgtattcttcaccgtaaccctgccaggtgaacaaagttct---------------ttta-ctttatcagtttagggaataaggggttaaagctcaaagagtttgcgtaacttgcc---caagtagtggaactaggactccaacccacttcttttgattctgagtacagtgatcttttgcttgtactggctgcctcCCCATTCAGAGTACCC i otoGar3.GL873528 C 0 I 2 s mm10.chr16 75822639 695 + 98207768 TTAATTCTTTTCTTCACTGCTTTCATTCCACCTCATTAAGTGACTTCATTTGCTACCATCCCAAGGTGCTGCTGGTAACTAGTAAGATT-TGAAGGAATT-AAAATCCTTTCTCTCCTGAGGAGACAGCATGAATG-GCTATAAA---AAAAAATGGTAGCCTGCAAGTACAATCCCTAAAATGAGAATTATAATAACCATTACAATTATATAAACCattataatatattatattaaataattattatttattatgtatatattatataaat-----tatattcatata--aatttaggtatttatataaatatacattttacataatatttata-ttttatataaattgatatataatatattatatattatatTATTT-AAATTATAATTCTATATACCATTATAATAGTCAGTATGAAAAATACGTTTATTAACTGAACAAGGATTATTTGAGGTTCTCAACTA-AGGAGCTCTATCTAAATAGGACAGCAA-----AGTCACTATGTCCCTCTGGCCGTTGCTTCTTTTGTTCTTCTCCCTCG-CCCTTTAGGCGGACAGGATT-------------------GATTTTTATCATTTTC-AGGGTAAGGATTTGAAAGTCAGAGAGTTTGTGTGAGTGGAT---CAAGTCAGGGAACTATGAGTACAAGGCACTCCTTTTGATTAGGAGTGCAGTGATC-TTTGCTTGCATTCGTTCTCTCTCCATTCAGCCAACCT i mm10.chr16 I 2 C 0 s canFam3.chr31 11442841 517 + 39895921 TTAATTCTCTTCTCCACTAACTTTATTCCATCTCATTAATCAGCTCTACTTCCCACCATCCCAAGGTGCTGCTACTTGTTAGTAAGATTTGGAAGAAATT-AAAGTCCTTC---TCTTGAGAAGAtggggtgggtgagctgtgaggaagagaggcagcagtcagtgcatgaaatgcttgaaatatagaataaag------------------------------------aagtcatataattattagtc---------------tgaaaa---------------aga--cattta-----gtcaatgaatgtgaat---------------ta-t-----------tg-------------------------------gAATTATT----------------------------------------------------------------------CTCAATTA-TGAGGAACTAGTTTTAAGAGAAAATAATTAAAAATCCCTAGGTCTATCTAGTcattgttttatttgttcttcaccataacccttttaggtgaacagagtcct---------------attatttttgccattttaaaaaataaggagttgaagctcaaagagtttgtgtaacttgcc---caagtggtagaactaggactccaacccacttcttttgattcacagtgaagtgatcttttgcttgtactagctgcctcCCTATTCAGTGTACCC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 637946 573 - 6883506 CCAATTCTCTTCTCCACTGCCTACATTCCATCTCGTTAAGCAAGTCTGCTCTTCACCATCCCAACTTGCTACTAGTTGCTAGTGAGATTTTAAGGAAATTCAAAATCCTTCTTCTCTTGAGAAGAATCAGTAGgtgagctgtaaggaaaagaagtgacagttagtgagtgaaatgcttgaaatgcagatttcgg------------------------------------agattatataatcatttgtc---------------tgaaaagagccatgaatataacaa--tattta-----ttgagtgaatagggAT---------------AA-TTTGTGAATAACTG-------------------CC---TTTTTG-GAATGTTT----------------------------------------------------------------------CTTAACTAGGTAAGAACTCGTTGAAGTGAAAAATGTTAGGGAATCCCTAAGTCTGTCTAGTTACTCtttaatatgttctttaccataaccctgttagatgggcaaggtgccttttttttttttttttttttttttaccattttagagaataaggagtt-aagttcaaagagtttgtgtaacttgctgcccaagtggtagaatcagagctccaacccacagcttttgattcagagtgcaatgatcttttccttgtaccacctgcctcCCTATTCAGTATACCC i dasNov3.JH568778 C 0 C 0 a score=37670.000000 s hg38.chr21_GL383578v2_alt 37396 2 + 63917 AC s panTro5.chr21 874909 2 + 33445071 AC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559557 2 + 46275980 AC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471650 2 - 13858734 AC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1593848 2 + 32716333 AC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152665850 2 - 185818997 AC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473626 2 - 192294377 AC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918493 2 + 9440265 AC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658188 2 + 21915920 AC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12302860 2 - 90373283 AC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630526 2 + 1337817 AC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609769 2 - 3237654 AC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141660 2 + 50472720 AC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490234 2 + 13128814 AC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027790 2 - 14377064 AC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075502 2 + 9889416 AC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844092 2 + 47401472 AC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1206177 2 - 2312742 AC i proCoq1.NW_012147997v1 C 0 C 0 s mm10.chr16 75823334 2 + 98207768 GC i mm10.chr16 C 0 C 0 s canFam3.chr31 11443358 2 + 39895921 AC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638519 2 - 6883506 AC i dasNov3.JH568778 C 0 C 0 e otoGar3.GL873528 18327522 2 - 38779656 I a score=2192897.000000 s hg38.chr21_GL383578v2_alt 37398 118 + 63917 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT s panTro5.chr21 874911 118 + 33445071 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCGCCACGGGAT--GTGCTCTCAAAGAAATTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559559 118 + 46275980 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCGCCACGGGAT--GTGCTCTCAAAGAAATTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471652 118 - 13858734 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCGCCACGGGAT--GTGCTCTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1593850 118 + 32716333 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCGCCACAGGAT--GTGCTCTCAAAGAACTTTCCTTGTGAGACATCAAACTATCACACTCCTCACCCTCCTCACTCTGCCCCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152665852 118 - 185818997 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTGTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473628 118 - 192294377 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTGTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918495 118 + 9440265 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTGTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658190 118 + 21915920 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12302862 118 - 90373283 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACTACGGGAT--GTGCTCTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTTACCCTCCTCGCTCTACCCCT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630528 118 + 1337817 AGGATGCTGTGTGAAGTTCTGTAGGCAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609771 118 - 3237654 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTTCTTTGTGAAACATCAAACTATCATACTCCTCACCATCCTCACTCTGCCCCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141662 118 + 50472720 AGGACGCTGTGTGAAGTTCTATAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAACATCAAACTATCATACTTTTCACCCTCCTCACTCTGTCCCT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490236 118 + 13128814 GGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAACATCAAACTATCATACTTTTCACCCTCCTCACTCTGCCCCT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027792 118 - 14377064 GGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAACATCAAACTATCATATTTTTCCCCCTCCTCACTGTGCCCCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075504 118 + 9889416 AGGATGCTGTGTGAAGTTCTGTAGGTAATTTGTAGATTCACCACGGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAACATCAAACTATCATACTTTTCACCCTCCACACTCTGCCCGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844094 118 + 47401472 AGGAAGCCGTGTGAAGTTCTGTAGGTAGTTTGTAGATTCACCACAGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAAGATCAAACTATCATACTCCTCACCCTCCTCACTCTGCCCCT i micMur3.chr31 C 0 I 90 s proCoq1.NW_012147997v1 1206179 118 - 2312742 AGGAAGCCATGTGAAGTTCTGTAGGTAGTTTGTAGATTCACCACAGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAAGATCAAACTATCATACTCCTCACCCTCCTCACTATGCCCCT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18327524 118 - 38779656 AGGATGCTGTGTGAAGTTCTGGAGGTAGTTTTTAGATTCACCACAGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAAGATCAAACTATCATGCTCCTCACCCCCCTCACTCTGCCCCT i otoGar3.GL873528 I 2 C 0 s mm10.chr16 75823336 120 + 98207768 AGGATGCTGCATACAGTTCTGCAGGTAGCATGTAGGTGCACCACAGGATACATGCTCTCAAAGAACTTCCTCTGTAAAAGATCAAACAACGGTACTCCTCGCCCTGTTCACTCTGTTCCC i mm10.chr16 C 0 C 0 s canFam3.chr31 11443360 103 + 39895921 AGGATGCTGTGTGAAGTTCTGTAGGCAATTTGTAGATTCACCACAGGAT--ATGCTCTCAAAGAACTTCCTTTGTGAGAGATCAAACTGTCACACTCCTCACCCT--------------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638521 107 - 6883506 AGGATGCTGTGTGATGTTCTGTAGGTAATTTGTAGATTCGCCACAGGAT--GTGCTCTCAAAGAACTTCCTTTGTGAAAGATCAAACTACTGTACTCCTTACTCTCTTT----------- i dasNov3.JH568778 C 0 C 0 a score=457677.000000 s hg38.chr21_GL383578v2_alt 37516 40 + 63917 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCACATCCAC s panTro5.chr21 875029 40 + 33445071 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559677 40 + 46275980 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471770 40 - 13858734 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1593968 40 + 32716333 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152665970 40 - 185818997 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473746 40 - 192294377 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918613 40 + 9440265 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658308 40 + 21915920 ACTGAAGCCT---ACAGGTGCAGCAATGGGTATGCATATCCAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12302980 40 - 90373283 ACTGAAGCCT---ACAGGTGCAGAAATTGATATGCATATCCAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630646 40 + 1337817 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609889 40 - 3237654 ACTGAAGCCT---ACAGGTGCAGAAATGGATATGCATATCCAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141780 40 + 50472720 GCTGAAGCTG---ACAGGTGCCCAAATGAATATGCATATCCAC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490354 40 + 13128814 GCTGAAGCTG---ATAGGTGCCTAAATGGATATGCATATCCAC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027910 40 - 14377064 GCTGAAGCCG---ACAGGTGCCCAAATGGATATGCATATCCAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075622 40 + 9889416 GCTGAAGCCG---ACAGGTGCCCAAATGGATATGCATATCCAC i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1206297 43 - 2312742 GCCGAAGCCCACGACAGGCACACAAATGGATATACATATCCAC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18327642 39 - 38779656 GCGGAAGCC----ATAGGCACACAAATGGATATGCATGTCTAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823456 40 + 98207768 ACTGAAGTCC---CAGGGTACACAGACAGATGTGCATATATac i mm10.chr16 C 0 C 0 s canFam3.chr31 11443463 6 + 39895921 -------------------------------------ATCCAC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638628 11 - 6883506 ----------------------------ACTCTGC----CCTC i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16844212 90 + 47401472 I a score=17290.000000 s hg38.chr21_GL383578v2_alt 37556 1 + 63917 A s panTro5.chr21 875069 1 + 33445071 A i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559717 1 + 46275980 A i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471810 1 - 13858734 A i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594008 1 + 32716333 A i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666010 1 - 185818997 A i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473786 1 - 192294377 A i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918653 1 + 9440265 A i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658348 1 + 21915920 A i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303020 1 - 90373283 A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630686 1 + 1337817 A i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609929 1 - 3237654 A i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141820 1 + 50472720 A i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490394 1 + 13128814 A i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027950 1 - 14377064 A i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075662 1 + 9889416 A i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1206340 1 - 2312742 A i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18327681 1 - 38779656 A i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823496 1 + 98207768 a i mm10.chr16 C 0 C 0 s dasNov3.JH568778 638639 1 - 6883506 A i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16844212 90 + 47401472 I e canFam3.chr31 11443469 0 + 39895921 C a score=28809.000000 s hg38.chr21_GL383578v2_alt 37557 2 + 63917 CT s panTro5.chr21 875070 2 + 33445071 CT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559718 2 + 46275980 CT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471811 2 - 13858734 CT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594009 2 + 32716333 CT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666011 2 - 185818997 ct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159473787 2 - 192294377 CT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918654 2 + 9440265 CT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658349 2 + 21915920 CT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303021 2 - 90373283 CT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630687 2 + 1337817 CT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609930 2 - 3237654 CT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141821 2 + 50472720 CT i calJac3.chr21 C 0 C 0 s cebCap1.NW_016107322v1 7027951 2 - 14377064 CT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075663 2 + 9889416 CT i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1206341 2 - 2312742 CT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18327682 2 - 38779656 CT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823497 2 + 98207768 ca i mm10.chr16 C 0 C 0 s dasNov3.JH568778 638640 2 - 6883506 CT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16844212 90 + 47401472 I e saiBol1.JH378168 2490395 0 + 13128814 C e canFam3.chr31 11443469 0 + 39895921 C a score=13073.000000 s hg38.chr21_GL383578v2_alt 37559 1 + 63917 C s panTro5.chr21 875072 1 + 33445071 C i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559720 1 + 46275980 C i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471813 1 - 13858734 C i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594011 1 + 32716333 C i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666013 1 - 185818997 c i rheMac8.chr3 C 0 I 260 s macFas5.chr3 159473789 1 - 192294377 C i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918656 1 + 9440265 C i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658351 1 + 21915920 C i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303023 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630689 1 + 1337817 C i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609932 1 - 3237654 C i colAng1.NW_012116933v1 C 0 C 0 s cebCap1.NW_016107322v1 7027953 1 - 14377064 C i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075665 1 + 9889416 C i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1206343 1 - 2312742 C i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18327684 1 - 38779656 T i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823499 1 + 98207768 c i mm10.chr16 C 0 C 0 s dasNov3.JH568778 638642 1 - 6883506 C i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16844212 90 + 47401472 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e canFam3.chr31 11443469 0 + 39895921 C a score=12376.000000 s hg38.chr21_GL383578v2_alt 37560 1 + 63917 A s panTro5.chr21 875073 1 + 33445071 A i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559721 1 + 46275980 A i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471814 1 - 13858734 A i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594012 1 + 32716333 A i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159473790 1 - 192294377 A i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918657 1 + 9440265 A i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658352 1 + 21915920 A i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303024 1 - 90373283 A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630690 1 + 1337817 A i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609933 1 - 3237654 A i colAng1.NW_012116933v1 C 0 C 0 s cebCap1.NW_016107322v1 7027954 1 - 14377064 A i cebCap1.NW_016107322v1 C 0 I 7 s aotNan1.NW_018487195v1 6075666 1 + 9889416 A i aotNan1.NW_018487195v1 C 0 I 7 s proCoq1.NW_012147997v1 1206344 1 - 2312742 A i proCoq1.NW_012147997v1 C 0 I 13770 s otoGar3.GL873528 18327685 1 - 38779656 A i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823500 1 + 98207768 a i mm10.chr16 C 0 I 36 s dasNov3.JH568778 638643 1 - 6883506 A i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16844212 90 + 47401472 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e canFam3.chr31 11443469 0 + 39895921 C e rheMac8.chr3 152666014 260 - 185818997 I a score=16523.000000 s hg38.chr21_GL383578v2_alt 37561 3 + 63917 TGA s panTro5.chr21 875074 3 + 33445071 TGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559722 3 + 46275980 TGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471815 3 - 13858734 TGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594013 3 + 32716333 TGA i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159473791 3 - 192294377 TGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918658 3 + 9440265 TGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658353 3 + 21915920 TGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303025 3 - 90373283 TGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630691 3 + 1337817 TGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 609934 3 - 3237654 TGA i colAng1.NW_012116933v1 C 0 I 61 s otoGar3.GL873528 18327686 3 - 38779656 CAA i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 638644 3 - 6883506 AGA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e canFam3.chr31 11443469 0 + 39895921 C e rheMac8.chr3 152666014 260 - 185818997 I a score=781.000000 s hg38.chr21_GL383578v2_alt 37564 3 + 63917 TGT-- s macFas5.chr3 159473794 3 - 192294377 AGt-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918661 3 + 9440265 AGt-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658356 3 + 21915920 AGt-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303028 3 - 90373283 AGt-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 630694 3 + 1337817 AGT-- i manLeu1.NW_012107264v1 C 0 C 0 s otoGar3.GL873528 18327689 3 - 38779656 AGC-- i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 638647 3 - 6883506 --TAT i dasNov3.JH568778 C 0 I 23 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e canFam3.chr31 11443469 0 + 39895921 C e colAng1.NW_012116933v1 609937 61 - 3237654 I e rheMac8.chr3 152666014 260 - 185818997 I e nomLeu3.chr25 1594016 0 + 32716333 C e gorGor5.CYUI01015003v1 471818 0 - 13858734 C e panPan2.chr21 14559725 0 + 46275980 C e panTro5.chr21 875077 0 + 33445071 C a score=-378.000000 s hg38.chr21_GL383578v2_alt 37567 3 + 63917 -CTT s macFas5.chr3 159473797 2 - 192294377 -ct- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918664 2 + 9440265 -ct- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658359 3 + 21915920 -ctt i cerAty1.NW_012002954v1 C 0 I 466 s chlSab2.chr2 12303031 2 - 90373283 -ct- i chlSab2.chr2 C 0 I 217 s manLeu1.NW_012107264v1 630697 2 + 1337817 -CT- i manLeu1.NW_012107264v1 C 0 M 1230 s otoGar3.GL873528 18327692 3 - 38779656 GCT- i otoGar3.GL873528 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e colAng1.NW_012116933v1 609937 61 - 3237654 I e rheMac8.chr3 152666014 260 - 185818997 I e nomLeu3.chr25 1594016 0 + 32716333 C e gorGor5.CYUI01015003v1 471818 0 - 13858734 C e panPan2.chr21 14559725 0 + 46275980 C e panTro5.chr21 875077 0 + 33445071 C a score=-2303.000000 s hg38.chr21_GL383578v2_alt 37570 8 + 63917 ATAGTCTT s panTro5.chr21 875077 6 + 33445071 --AGTCTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559725 6 + 46275980 --AGTCTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471818 6 - 13858734 --AGTCTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594016 6 + 32716333 --AGTCTT i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159473799 2 - 192294377 ---gt--- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5918666 2 + 9440265 ---tt--- i macNem1.NW_012019910v1 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e chlSab2.chr2 12303033 217 - 90373283 I e colAng1.NW_012116933v1 609937 61 - 3237654 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5658362 466 + 21915920 I e rheMac8.chr3 152666014 260 - 185818997 I a score=62144.000000 s hg38.chr21_GL383578v2_alt 37578 36 + 63917 ATAtctttctttcttt---cttt--ctttcttttttttttt s panTro5.chr21 875083 30 + 33445071 ATATCtttctttcttt---cttt--------tttttttttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559731 33 + 46275980 ATATCtttctttcttt---cttt-----tcttttttttttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471824 38 - 13858734 ATATCTTTCTTTCttt---cttttttttttttttttttttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594022 39 + 32716333 ATATCTTTCTTTCtttttgcttt--tttttttttttttttt i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159473801 36 - 192294377 ctgtctttctttcttt---cttt--ctttctttctttcttt i macFas5.chr3 C 0 I 4 s macNem1.NW_012019910v1 5918668 36 + 9440265 ctttctttctttcttt---cttt--ctttctttctttcttt i macNem1.NW_012019910v1 C 0 I 436 s colAng1.NW_012116933v1 609998 36 - 3237654 ctttctttctttcttt---cttt--ctttctttcttttctt i colAng1.NW_012116933v1 I 61 I 33 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e chlSab2.chr2 12303033 217 - 90373283 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5658362 466 + 21915920 I e rheMac8.chr3 152666014 260 - 185818997 I a score=2611.000000 s hg38.chr21_GL383578v2_alt 37614 2 + 63917 tt s panTro5.chr21 875113 2 + 33445071 tt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559764 2 + 46275980 tt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471862 2 - 13858734 tt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594061 2 + 32716333 tt i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159473841 2 - 192294377 ct i macFas5.chr3 I 4 I 505 s colAng1.NW_012116933v1 610067 2 - 3237654 ct i colAng1.NW_012116933v1 I 33 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e chlSab2.chr2 12303033 217 - 90373283 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5658362 466 + 21915920 I e macNem1.NW_012019910v1 5918704 436 + 9440265 I e rheMac8.chr3 152666014 260 - 185818997 I a score=-588.000000 s hg38.chr21_GL383578v2_alt 37616 4 + 63917 -ggag s panTro5.chr21 875115 4 + 33445071 -tgag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559766 4 + 46275980 -gtag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471864 4 - 13858734 -tgag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594063 4 + 32716333 -tgag i nomLeu3.chr25 C 0 C 0 s colAng1.NW_012116933v1 610069 4 - 3237654 ttcA- i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e chlSab2.chr2 12303033 217 - 90373283 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5658362 466 + 21915920 I e macNem1.NW_012019910v1 5918704 436 + 9440265 I e rheMac8.chr3 152666014 260 - 185818997 I e macFas5.chr3 159473843 505 - 192294377 I a score=1911.000000 s hg38.chr21_GL383578v2_alt 37620 1 + 63917 a s panTro5.chr21 875119 1 + 33445071 a i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559770 1 + 46275980 a i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471868 1 - 13858734 a i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594067 1 + 32716333 a i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5658828 1 + 21915920 a i cerAty1.NW_012002954v1 I 466 C 0 s colAng1.NW_012116933v1 610073 1 - 3237654 a i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e chlSab2.chr2 12303033 217 - 90373283 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e macNem1.NW_012019910v1 5918704 436 + 9440265 I e rheMac8.chr3 152666014 260 - 185818997 I e macFas5.chr3 159473843 505 - 192294377 I a score=8595.000000 s hg38.chr21_GL383578v2_alt 37621 2 + 63917 ca s panTro5.chr21 875120 2 + 33445071 ca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559771 2 + 46275980 ca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471869 2 - 13858734 ca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594068 2 + 32716333 ca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666274 2 - 185818997 ca i rheMac8.chr3 I 260 C 0 s macFas5.chr3 159474348 2 - 192294377 ca i macFas5.chr3 I 505 C 0 s macNem1.NW_012019910v1 5919140 2 + 9440265 ca i macNem1.NW_012019910v1 I 436 C 0 s cerAty1.NW_012002954v1 5658829 2 + 21915920 ca i cerAty1.NW_012002954v1 C 0 C 0 s colAng1.NW_012116933v1 610074 2 - 3237654 ca i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e chlSab2.chr2 12303033 217 - 90373283 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=384057.000000 s hg38.chr21_GL383578v2_alt 37623 86 + 63917 gagtttcactcttgttgcccaggctggagtgcaatggtgtgatcttggctcactgcaacctccgcctcttgggtttgagcaattct s panTro5.chr21 875122 86 + 33445071 gagtttcgctcctgttgcccaggctggagtgcaatggtgtgatcttggctcactgcaacctccgcctcttgggtttgagcaattct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559773 86 + 46275980 gagtttcgctcctgttgcccaggctggagtgcaatggtgtgatcttggctcactgcaacctccgcctcttgggtttgagcaattct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471871 86 - 13858734 gagtttcgctcttgttgcccaggctggagtgcaatggtgtgatcttggctcactgcaacctccgcctcttgggtttgagcaattct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594070 86 + 32716333 gagttttgctcttgttgcccaagctggagtgcaatggtgtgatcttggctcactgcaacctccaccacctgggttcgagcaattct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666276 86 - 185818997 gagtttcactcttgttgcccaggctggagtgcaatgacttgatcttggctcactgcaacttccacctcctggatttgagcaattct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474350 86 - 192294377 gagtttcactcttgttgcccaggctggagtgcaatgacttgatcttggctcactgcaacttccacctcctggatttgagcaattct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919142 86 + 9440265 gagtttcactcttgttgcccaggctggagtgcaatgacttgatcttggctcactgcaacttccacctcctggatttgagcaattct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658831 86 + 21915920 gagtttcactcttgttgcccaggctggagtgcctctctctctctctggctctctgcaacttccacctcctggatttgagcaattct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303250 86 - 90373283 gagtttcactcttgttgcccaggctggagtacaatgacttgatcttggcttaccataacctccaccttctggatttgagcaattct i chlSab2.chr2 I 217 C 0 s colAng1.NW_012116933v1 610076 86 - 3237654 gagtttcactcttgttgcccaggctggagtgcaatgacttgatcttggctcactgcaacttccacctcctggatttgagcaattct i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e canFam3.chr31 11443469 0 + 39895921 C e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=361273.000000 s hg38.chr21_GL383578v2_alt 37709 89 + 63917 cctgcctcagcctctcaagtagctgggattacaggcatgcgccaccacgcctggctaattttttgtattttaag-tagagatggggtttc s panTro5.chr21 875208 89 + 33445071 cctgcctcagcctctcaagtagctgggattacaggcatgcgccaccacgcctggctaattttttgtattttaag-tagagatggggtttc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559859 89 + 46275980 cctgcctcagcctctcaagtagctgggattacaggcatgcgccaccacgcctggctaattttttgtattttaag-tagagatggggtttc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 471957 89 - 13858734 cctgcctcagcctctcaagtagctgggattacaggcatgcgccaccacgcctggctaattttttgtattttaag-tagagatggggtttc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594156 89 + 32716333 cctttctcagcctctcaagtagctgggattacaggcatacgccaccacgcctggctgattttttgtattttaag-tagagatggggtttc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666362 88 - 185818997 cctgcctcagcctctcaggtagctgggattataggcacgcgccaccatgcctggctaattttttgtatttttag-ta-ggatggggtttc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474436 88 - 192294377 cctgcctcagcctctcaggtagctgggattataggcacgcgccaccatgcctggctaattttttgtatttttag-ta-ggatggggtttc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919228 88 + 9440265 cctgcctcagcctctcaggtagctgggattataggcacgcgccaccatgcctggctaattttttgtatttttag-ta-ggatggggtttc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5658917 89 + 21915920 cctgcctctctctctctctctgctgggattacaggcatgcgccaccatgcctggctaattttttgtatctctctctc-tctctgggtttc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303336 89 - 90373283 cctgcctcagcctctcgagtagctgggattacagacacgcgccaccatgcctggctaattttttgtatttttag-tacagatggggtttc i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610162 89 - 3237654 cctgccacagcctctcgagtagctgggattacaggcatgcaccaccatgcctgactaattttttgtatttttag-tagagatggggtttc i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11443469 47 + 39895921 TCTGCCCC-GCCCCTGAAGC--------CTGCGGGCATGCA------------------------------AAA-TGGATAT---GCATA i canFam3.chr31 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638650 23 - 6883506 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=429541.000000 s hg38.chr21_GL383578v2_alt 37798 101 + 63917 tccatattggtcaggctggtctcaaactcctgacctcaggtgatctgcctgcctccgcctcccaaagtgctgggattacaggtgtgagccactgcgcctgg s panTro5.chr21 875297 101 + 33445071 tccatattggtcaggctggtctcaaactcctgacctcaggtgatctgcctgcctccgcctcccaaagtgctgggattacaggtgtgagccaccgcgcctgg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14559948 101 + 46275980 tccatattggtcaggctggtctcaaactcctgacctcaggtgatctgcctgcctccgcctcccaaagtgctgggattacaggtgtgagccaccgcgcctgg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472046 101 - 13858734 tccatattggtcaggctggtctcaaactcctgacctcaggtgatctgcctgcctccgcctcccaaagtgctgggattacaggtgtgagccactgcgcctgg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594245 101 + 32716333 tccatattgatcaggctggtctcaaactcctgacctcaggtgatctgcctgcctccggctcccaaattgctgggattacaggtgtgagccaccgcgcccgg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666450 101 - 185818997 tccatattggtcaggctggtctcaaactcctgacctcaggtgatccacccgcctccacctctcaaagttctgggactacaggtgtgagccactgtgcctgg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474524 101 - 192294377 tccatattggtcaggctggtctcaaactcctgacctcaggtgatccacccgcctccacctctcaaagttctgggactacaggtgtgagccactgtgcctgg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919316 101 + 9440265 tccatattggtcaggctggtctcaaactcctgacctcaggtgatccgcccgcctccacctcccaaagttctgggactacaggtgtgagccactgtgcctgg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659006 101 + 21915920 tccatattggtcaggctggtctcaaactcctgacctcaggctctctctctctctccacctcccaaagttctgagattacaggtgtgagccacggtacctgg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303425 101 - 90373283 tccatattggtcaggctggtctcaaactcccgacctcaggtaatccacccgcctccacctcccaaagttctgggattacaggtgtgagccaccgtgcctgg i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610251 101 - 3237654 tccatattggtcaggctggtctcaaactcccgacctcaggtgatctgcccgcctccatgtcccaaagttctgggattacaggtgtgagccaccgtgcctgg i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11443516 8 + 39895921 TCCATACT--------------------------------------------------------------------------------------------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638673 44 - 6883506 TCCATATT------------CACAAACT-------------------------TCCATCT-----GGTATTACATTTACAGGGATG--------------- i dasNov3.JH568778 I 23 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e saiBol1.JH378168 2490395 0 + 13128814 C e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=1749.000000 s hg38.chr21_GL383578v2_alt 37899 1 + 63917 c s panTro5.chr21 875398 1 + 33445071 c i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560049 1 + 46275980 c i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472147 1 - 13858734 c i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594346 1 + 32716333 c i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666551 1 - 185818997 t i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474625 1 - 192294377 t i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919417 1 + 9440265 t i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659107 1 + 21915920 t i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303526 1 - 90373283 t i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610352 1 - 3237654 t i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2490395 1 + 13128814 C i saiBol1.JH378168 C 0 C 0 e mm10.chr16 75823501 36 + 98207768 I e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e calJac3.chr21 19141823 0 + 50472720 C e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638717 0 - 6883506 C e canFam3.chr31 11443524 0 + 39895921 C e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=56809.000000 s hg38.chr21_GL383578v2_alt 37900 10 + 63917 cATGAA--GTCT s panTro5.chr21 875399 10 + 33445071 cATGAA--GTCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560050 10 + 46275980 cATGAA--GTCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472148 10 - 13858734 cATGAA--GTCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594347 10 + 32716333 cATGAA--GTCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666552 10 - 185818997 cATGAA--GTCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474626 10 - 192294377 cATGAA--GTCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919418 10 + 9440265 cATGAA--GTCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659108 10 + 21915920 cATGAA--GTCT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303527 10 - 90373283 cATGAA--GTCT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610353 10 - 3237654 cATGAA--GCCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141823 9 + 50472720 CACAAA--GTT- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490396 11 + 13128814 CACAAAGTGTC- i saiBol1.JH378168 C 0 C 0 s mm10.chr16 75823537 10 + 98207768 cacTGA--GCCC i mm10.chr16 I 36 C 0 s canFam3.chr31 11443524 10 + 39895921 CAGAAA--GTCT i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e aotNan1.NW_018487195v1 6075667 7 + 9889416 I e cebCap1.NW_016107322v1 7027955 7 - 14377064 I e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638717 0 - 6883506 C e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=8725.000000 s hg38.chr21_GL383578v2_alt 37910 1 + 63917 T s panTro5.chr21 875409 1 + 33445071 T i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560060 1 + 46275980 T i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472158 1 - 13858734 T i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594357 1 + 32716333 T i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666562 1 - 185818997 T i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474636 1 - 192294377 T i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919428 1 + 9440265 T i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659118 1 + 21915920 T i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303537 1 - 90373283 T i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610363 1 - 3237654 T i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141832 1 + 50472720 C i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490407 1 + 13128814 T i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027962 1 - 14377064 T i cebCap1.NW_016107322v1 I 7 C 0 s aotNan1.NW_018487195v1 6075674 1 + 9889416 T i aotNan1.NW_018487195v1 I 7 C 0 s mm10.chr16 75823547 1 + 98207768 C i mm10.chr16 C 0 C 0 s canFam3.chr31 11443534 1 + 39895921 T i canFam3.chr31 C 0 C 0 e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e otoGar3.GL873528 18327695 0 - 38779656 C e dasNov3.JH568778 638717 0 - 6883506 C e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=291174.000000 s hg38.chr21_GL383578v2_alt 37911 32 + 63917 ATTTCATATTATACTTTTATTCATGTTCTAGA s panTro5.chr21 875410 32 + 33445071 ATTTCATATTATACTTTTATTCGTGTTCTAGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560061 32 + 46275980 ATTTCATATTATACTTTTATTCGTGTTCTAGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472159 32 - 13858734 ATTTCATATTATACTTTTATTCGTGTTCTAGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594358 32 + 32716333 GTTTCATATTATACTTTAATTCGTGTTCTAGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666563 32 - 185818997 ATTTCATATTATACTTTTATTTGTGTTCTAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474637 32 - 192294377 ATTTCATATTATACTTTTATTTGTGTTCTAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919429 32 + 9440265 ATTTCATATTATACTTTTATTTGTGTTCTAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659119 32 + 21915920 ATTTTATATTATACTTTTATTTGTGTTCTAGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12303538 32 - 90373283 ATTTCATATTATACTTTCATTTGTGTTCTAGA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610364 32 - 3237654 ATTTCATATTATACTTTTATTTGTGTTCTAGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141833 32 + 50472720 ATTTCATATTATACCTTTATTTGTGTTCTAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490408 32 + 13128814 ATTTCATATTATACTTTTATTTGTGTTCTAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027963 32 - 14377064 ATTTCATATTATACTTTTATTTGTgttctaaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075675 32 + 9889416 ATTTTATATTATACTTTTATTTGTGTTCTAAA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18327695 32 - 38779656 ATCCTGTATCATACTTTCATGCATTTTTATCA i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75823548 32 + 98207768 ACCTGGTGTCATGTTTCTTTACATTTGCTGCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11443535 25 + 39895921 ATTTTATGGAA-------ATTCATTTTCTGAC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638717 11 - 6883506 ------TATTTTACCAA--------------- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e micMur3.chr31 16844212 90 + 47401472 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=1563227.000000 s hg38.chr21_GL383578v2_alt 37943 139 + 63917 AGTGggacttactcag-------aag-tgtaagcaac-tgactg-ctatggagtatgactgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctatctgccaagatgccATAC---TTTCTT-----TCAACCAACTTTAACATCT s panTro5.chr21 875442 139 + 33445071 AGTGggacttactcag-------aag-cgtaagcaac-tgactg-ctatggagtatgactgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---caactgtctgccaagatgccATAC---TTTCTT-----TCAACCGACTTTAACATCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560093 139 + 46275980 AGTGggacttactcag-------aag-cgtaagcaac-tgactg-ctatggagtatgactgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctgtctgccaagatgccATAC---TTTCTT-----TCAACCGACTTTAACATCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472191 139 - 13858734 AGTGggacttactcag-------aag-cgtaagcaac-tgactg-ctatggagtatgactgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctatctgccaagatgccATAC---TTTCTT-----TCAACCGACTTTAACATCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594390 139 + 32716333 AGTGggacttactcag-------aag-cataagcaac-tgactg-ctatggagtatgactgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctgtctgccaagatgccATAC---TTTCTT-----TCAACCGACTGTAACATCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666595 139 - 185818997 AGTGggacttactcag-------aag-ggtaagcaac-tgactg-ctatggagtatgattgga-aagt---tcaccagctcacatctgccctaaaatatc--------------tctc---cacctatctgccaagatgccATAC---TTTCTT-----TCAACCGACTTTAACGTCT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474669 139 - 192294377 AGTGggacttactcag-------aag-ggtaagcaac-tgactg-ctatggagtatgattgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctatctgccaagatgccATAC---TTTCTT-----TCAACCGACTTTAACGTCT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919461 139 + 9440265 AGTGggacttactcag-------aag-ggtaagcaac-tgactg-ctatggagtatgattgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctatctgccaagatgccATAC---TTTCTT-----TCAACTGACTTTAACGTCT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659151 139 + 21915920 AGTGGGACTTACTCAG-------AAG-GGTAAGCAAC-TGACTG-CTATGGAGTATGATTGGA-AAGT---TCACAAGCTCACATCTGCCct---ctctc--------------tctctctctcctatctgccaagatgccatac---tttctt-----tcaactgactttaacatct i cerAty1.NW_012002954v1 C 0 I 74 s chlSab2.chr2 12303570 139 - 90373283 Agcgggacttactcag-------aag-ggtaagcaac-tgcctg-ctatggagtatgattgga-aagt---tcacaagctcacatctgccctaaaatacc--------------tctt---cacttatctaccaagatgccATAC---TTTCTT-----TCAACCGACTTTAACATCT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610396 139 - 3237654 AGTGggacttactctg-------aag-ggtaagcaac-tgactg-ctatggagtatgattgga-aagt---tcacaagctcacatctgccctaaaatatc--------------tctc---cacctatctgccaaaatgccATAC---TTTCTT-----TCAACTGACTTTAACATCT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19141865 154 + 50472720 AGTGGGACTTACTCAG-------AAG-GGTAGGCCACTTAACTG-CTATGGCGTATAATTGGA-AAGT---TCACAAGCTCACATCTTCCCTAAAATATGTCTTCTAAAATATGTCTC---CACCTATCTGCCAAGATGTCATAC---CTTCTC-----TCAACTGACTTTAACATCT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490440 148 + 13128814 AGTGggacttactcag--------ag-ggtaggccac-tgactg-ctacagagtatgattgga-aagt---tcacaagctcacatctgccctaaaatatgtctcctaAAATATGTCTC---CACCTATCTGCCAAGATGACATAC---CTTCTC-----TCAACTGACTTTAAA---- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7027995 146 - 14377064 agtggg-------tag-------aag-ggtaggccac-tgactg-ctatggagtatgattgga-aagt---tcacaagctcacatctgccctaaaatatgtctcctaAAATACGTCTC---CACCTATCTGCCAAGATGACATAC---CTTCTC-----TCAACTGACTTTAAAATCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075707 142 + 9889416 AGTGGGACTTACTCAG-------AAG-GGTAGGCCAC-TGACTG-CTATGGAGGATGATTGGG-AAGT---TCACAAGCTCACATCTGCCCTAAAATATG-----------ATGTATC---CACCTATCTGCCAAGATGTCATAC---CTTCTC-----TCAACTGACTTTAACATCT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844302 139 + 47401472 AGTGGGACTTACCCAG-------AGA-GGTGTGCAAC-TCACTG-CTACACAGTATGATTGGA-AAGT---TCACAAGCTTGCATCTGCCCTAAAATATG--------------TCTC---CACCTGTCTGCCAAGATGCCATAC---CTTCTC-----TCAACTGATTCTAACACCT i micMur3.chr31 I 90 C 0 s otoGar3.GL873528 18327728 121 - 38779656 AATAGGACCTATTGGA-------GAC-GGTGGGCAAC-TAACTC-CTACTTCATGTGATTGAG-AAGT---TCAGAAGCTCACAGCTGCCC-----------------------------------GTCTGCCAAGACGCCATAC---CTTCTC-----TCAGCTGAATGTAACATCT i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75823580 140 + 98207768 CGTGGGACTTA---GA-------TGT-GGTTGGCAAT-CAGCGG-ATCCACGGGGCTACTGGATCAGTCAGTCGCAACAACACACCTTCCCTATTATGTG--------------TCCG------CTGTGCACTTTGATTTTACACCTGCTTCTC-----TCAACGGATGCTAATGCCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11443560 136 + 39895921 AGTGCACCTTACCCAG-------AGGAGGTGGACAAC-TAGCTG-CTACATAGTATGATTGAG-AAGT---TCATAGGCTGACATCTGCCCTCAGGTAGG--------------TCTC---CACCTGTCTGCCAAGACGCCATGC---ATACTC---------CTGATTCTAACACTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638728 151 - 6883506 GTTGGGACTTACTGGGGGATGTTGGG-TATGGGCAAC-TCACCGTCTACATAGTAAGATTAAG-GAGA---TCAC-AGCTCACACCTGCCCTCAAATTCA--------------TCTC---CATCTGTCTGCCAAGATGCCATAC---TTTCTCCTCTTTTACCTGATTTTAATGCCT i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=164994.000000 s hg38.chr21_GL383578v2_alt 38082 50 + 63917 TATCTGTAAGCATA-CTAGAATTGGAAaaacaaacaaacaa--------caaaaaaacC s panTro5.chr21 875581 54 + 33445071 TATCTGTAAGCATA-CTAGAATTGGAAaaacaaacaaacaa----acaacaaaaaaacC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560232 54 + 46275980 TATCTGTAAGCATA-CTAGAATTGGAAaaacaaacaaacaa----acaacaaaaaaacC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472330 58 - 13858734 TATCTGTAAGCATA-CTAGAATTGGAAaaacaaacaaacaaacaaacaacaaaaaaacC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594529 50 + 32716333 TATCTGTAAGCATA-CTAGAATTGGAAAAACAAACAAACAA--------CAACAAAACC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666734 53 - 185818997 TATCTGTAAGCATA-CTAGAATTGGAAAACAGAAAACAAAA---CAAAAC--AAAAATG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474808 53 - 192294377 TATCTGTAAGCATA-CTAGAATTGGAAAACAGAAAACAAAA---CAAAAC--AAAAATG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919600 53 + 9440265 TATCTGTAAGCATA-CTAGAATTGGAAAACAGAAAACAAAA---CAAAAC--AAAAATG i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12303709 55 - 90373283 TATCTGTAAGCATA-CTAGAATTGGaaaacaaaaaacataa---caaaacaaaaaaaTG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610535 55 - 3237654 TATCTGTAAGCATA-CTAGAATTGGaaaacaaaaaacaaaa---caaaacaaaaaaaTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142019 36 + 50472720 TATCTGTAAATGTG-CTAGAATTGGTT-----------AAA-----------AAAAATG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490588 35 + 13128814 -ATCTGTAAGCATG-CTAGAATTGGTT-----------AAA-----------AAAAATG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028141 41 - 14377064 TATCTGTAAGTGTG-CTAGAATTGGGTAA------AAAAAA-----------AAAAATG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075849 35 + 9889416 TATCTGTAAGCGTG-CTAGAATTGGTT------------AA-----------AAAAATG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844441 32 + 47401472 CGTCTATAAGGGAG-CTGGAACTGGTAATAATG-------------------------- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18327849 32 - 38779656 CATCAATAAGGGAG-CTGGGATTGGTAACAAAG-------------------------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823720 22 + 98207768 ------------TA-TCGAAAATGGAGGAAGAGAT------------------------ i mm10.chr16 C 0 C 0 s canFam3.chr31 11443696 48 + 39895921 CATCCATAAGGAGAGCTAGAATTAGCTaaaaaaaaaaaaaa-----------aaaaaaG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638879 33 - 6883506 CATCTATGAGAGAG-CTAAAATTAATAAAAAATG------------------------- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1206345 13770 - 2312742 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5659290 74 + 21915920 I a score=279610.000000 s hg38.chr21_GL383578v2_alt 38132 22 + 63917 TGGTTCAATTATTTCTATAACA s panTro5.chr21 875635 22 + 33445071 TGGTTCAATTATTTCTATAACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560286 22 + 46275980 TGGTTCAATTATTTCTATAACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472388 22 - 13858734 TGGTTCAATTATTTCTATAACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594579 22 + 32716333 TGGTTCAATTATTTCTGTAACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666787 22 - 185818997 TGGTTCAATTATTTCTATAACA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159474861 22 - 192294377 TGGTTCAATTATTTCTATAACA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919653 22 + 9440265 TGGTTCAATTATTTCTATAACA i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12303764 22 - 90373283 TGGTTCAATTATTTCTATAACA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610590 22 - 3237654 TGGTTCAATTATTTCTATAACA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142055 22 + 50472720 TCTTTCAATTATTTCTTTAATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490623 22 + 13128814 TGTTTCAATTATTTCTTTAACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028182 22 - 14377064 TGTTTCAATTATTTCTTTAACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075884 22 + 9889416 TGTTTCAATTATTTCTTTAACA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844473 22 + 47401472 TGGCTCAATTGTTTCTATCACA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220115 22 - 2312742 TGGCTCAATTGTTTCTATAACA i proCoq1.NW_012147997v1 I 13770 C 0 s otoGar3.GL873528 18327881 22 - 38779656 TAGCTCATTTGTTTCTATAACA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823742 20 + 98207768 --TCTCAGCTGCTTCCATATCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11443744 21 + 39895921 TGGTTCAA-TGTCACTATTACA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638912 22 - 6883506 TGGCTCAATTGTTTCTAGAACA i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5659290 74 + 21915920 I a score=2782601.000000 s hg38.chr21_GL383578v2_alt 38154 234 + 63917 GTGCCTTTcactagtg-ag-tgtgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaa-aaaataaaatag-aaaatatttaagtgaagtgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtgtatgtgagacctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTGA-AAAAAAAGGTTAAGAA s panTro5.chr21 875657 234 + 33445071 GTGCCTTTcactagtg-ag-tgtgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaa-aaaataatatag-aaaatattaaagtgaagtgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtgtatgtgagacctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTGA-AAAAAAAGGTTAAGAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560308 234 + 46275980 GTGCCTTTcactagtg-ag-tgtgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaa-aaaataaaatag-aaaatattaaagtgaagtgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtgtatgtgagacctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTGA-AAAAAAAGGTTAAGAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472410 235 - 13858734 GTGCCTTTcactagtg-ac-tgtgaaatcagtttttgcaggtcaaaaccaacatttcaaatatgaagtagaa-aaaataaaacag-aaaatattaaagtgaagtgaatgaaattgggggaaatattatttcatgaca-ttttgtttcCATTTTTT-TCTTTGTGTATGTGAGACCTCACATACTAAATCCTTA----TG-AAAAATTTATGTCTTGGGAGATGACAGGGA-AAAAAAAGTTTAAGAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594601 234 + 32716333 GTGCCTTTcactagtg-ag-tgtgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagtgaagtgcatgaaactgggggaaatattaattcatgaca-ttttgtttccatttttt-tctttgtgtatgtgagacctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGGTTAAGAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152666809 234 - 185818997 GTGCCTTTcactagtg-aa-tatgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagttaagtgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtatatgtgagatctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGGTTAAGAA i rheMac8.chr3 C 0 I 353 s macFas5.chr3 159474883 234 - 192294377 GTGCCTTTcactagtg-aa-tatgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagttaagtgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtatatgtgagatctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGGTTAAGAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5919675 234 + 9440265 GTGCCTTTcactagtg-ag-tatgaaatcag-ttttgcaggtcaaaaccagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagttaagtgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtatatgtgagatctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGGTTAAGAA i macNem1.NW_012019910v1 C 0 I 346 s cerAty1.NW_012002954v1 5659364 234 + 21915920 TTGCCTTTcactagtg-ag-tatgaaatcag-ttttgcaggtcaaaaccagctctctctctctctagtcgaataaaataaaatag-aaaatattaaagtgaactgcatgaaattgggggaaatattatttcatgaca-ttttgcttccatttttt-tctttgtatatgtgagacctcacatacaaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGGTTAAGAA i cerAty1.NW_012002954v1 I 74 C 0 s chlSab2.chr2 12303786 234 - 90373283 GTGCCTTTcactaatg-ag-tatgaaatcag-ttttgcaggtcaaaatcagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagtgaactgcatgaaattgggggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtatatgtgagacctcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGGCTAAGAA i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610612 235 - 3237654 GTGCCTTTcactagtg-ag-tatgaaatcagtttttgcaggtcaaaaccagcatttcaaatatgaagtagaataaaataaaatgg-aaaatgttaaagttaagtgcatgaaattggaggaaatattatttcatgaca-ttttgtttccatttttt-tctttgtatatgtgagaagtcacatactaaatcctta----tg-aaaaatttatttcttGGGAGATGACAGTG--AAAAAAAGACTAAGAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142077 234 + 50472720 Gtgcatttcactagtg-ag-tgtgaaatcgg-ttttgtgggtcaaaatcagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagtgaagtg-atgtgatcagaggaaatattattttatgaaa-ttttgtttcCATTTTTC-T-TGAGTGTATGTGAGAGCTCACATATTGaattttta----ta-aaatatttatttCTTGGGAGATGGCAGTGAGAAAAAAAGGTTAAGAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490645 234 + 13128814 GTGCCTTTcactagtg-ag-tgtgaaatcag-ttttgtgggtcaaaatcagcatttcaaatatgaagtagaataaaataaaatag-aaaatattaaagtgaaggg-atgtaatcagaggaaatattattttatgaaa-ttttgtttcCATTTTTC-T-TGAGTGTATGTGAGAGCTCACATATTGAAGTTTTA----TA-AAAAATTTATTTCTTGGGAGATGGCAGTGAGAAAAAAAGGTTAAGAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028204 228 - 14377064 GTGCCTTTcactagtg-ag-tgtgaaatcag-ctttgtgggtcaaaatcagcatttcaaatatgaagtagaataaaataaaatag-agaatattaaagtgaagtg-atataatcagaggaaatattattttatgaaa-ttttgtttcCATTTTTC-T-TGA--GTATGTGAGAGCTCACATATTGAATTTTTA----TA-AAAAATTTATTTATTGGGAGATGGCGGTGAG----AAAGTTTAAGAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6075906 234 + 9889416 GTGCCTTTcactagtg-ag-tgtgaaatcag-ttttgtgggtcaaaatcagcaattcaaatatgaagtagaataaaataaaatag-aaaatattaaagtgaagtg-atgtaatcagaggaaatattattttatgaaa-ttttgtttcCATTTTTC-T-TGAGTGTATGTGAGAGTTCACATATTGAATTTTTA----TA-AAAAATTTATTTCTTGGGAGATGGCAGTGAGAAAAAAAGGTTAAGAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844495 238 + 47401472 GTGCCTTTcactaggg-agttatgaaatcaa-ttgtgtgggtcaagaacagcatttcaaatatgaagtagaataaaataaaattg-aaaatatcagagagcactgcatgaaattagaggaaa---tgtgtcatgaaacttttctttccatttcct-tctctgtatatgtgggagctcacatactgaatccttgttttta-aaaaatgtatttcttaatggatggtagtga-aaaaaaagattgaaaa i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220137 240 - 2312742 GTACATTTcactaggg-agttatgaaatcaa-ttgcatgggtcaagaacagcatttcaaatatgaagtagaataaaataaaattg-caaatattagagagcactgcatgaaattagaggaaatattgtgtcatgaaacttttctttccatttttt-tctctgtatatgtgggagctcacatactgggtccttattttta-aaaaatgtatttcttagtggatggtagtg--aaaaaaaggttgaaaa i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18327903 227 - 38779656 ACCcccattactgggg-agttatgaaattaa-ttgtgtgggtcaagaacaacatttcaaatacgaaatagaataaaataaaatag-aaaatagcagagggcactgcgtgaaatta-agaaaatactgtgtcatgaaatttttctttccattttttctccctgtgtgtctgggagct-----------tcctta-tttta-aaaaatgtatttcttaatggatggcagtg---aaaaaagttcgagaa i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823762 207 + 98207768 GTGCATCTCCTTATGGTAA-TGTGAGGTAAA-TTATATGGTTCGAA-----TACTTAAAATATAAAGTAAAATAAAACAAC---------TGTCAGAGGGCACT--ATGAAATGAGAAGGAA---TATTTTATGAAT-TT---------TTTTAA-TCACTGAATATTTTAGAACTTGCCTAGTAGAGTCTTC----TGCAAAGACATTTTTATTGGT---TAGCAGTTT-AAAAAGTGGCTAAGAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11443765 214 + 39895921 GTGTTTTTcactagtg-agctatgaaatcag---------------gccatcatttcaaatatgaaatgccat-aagtaaaatggaaaaatgtcatcatgcactgcatgaaattagaggaaatactgttttatgaaacttttgtttccatttttt-c-tctgtgggtgtgcaagcccacatactgtatcctta----ag-aaaaatgtatttTGTGATGGATGGCACAG--AGA-------TGAGAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 638934 210 - 6883506 ATGTTTTTcactactg-atttgtgaaatcaa-tttagtgag---------------------tgaagtagaataaaataaaatag-aaaatatcagagtgtattgaatgaaattagaagaaattttttttcatgaaacttttgtttccatctttt-c-tctgtatgt----aagcttacatactagatcctta----tg-aaaaacttat-tcttggtggtggttggtgg-aacaaaaggttgaaaa i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=40389.000000 s hg38.chr21_GL383578v2_alt 38388 13 + 63917 GTAATCTTTTTTA---- s panTro5.chr21 875891 13 + 33445071 GTAATCTTTTTTA---- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560542 13 + 46275980 GTAATCTTTTTTA---- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472645 13 - 13858734 GTAATCTTTTTTA---- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594835 13 + 32716333 GTAATCTTTTTTA---- i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159475117 7 - 192294377 ACAATTA---------- i macFas5.chr3 C 0 C 0 s cerAty1.NW_012002954v1 5659598 11 + 21915920 ACAATTTTTTA------ i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304020 12 - 90373283 ACAATCTTTTTA----- i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 610847 13 - 3237654 ACAATCTTTTTAA---- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142311 13 + 50472720 ACAATCTTTTTTA---- i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2490879 12 + 13128814 ACAATCTTTTTT----- i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7028432 13 - 14377064 ACAATCTTTTTTA---- i cebCap1.NW_016107322v1 C 0 I 1 s aotNan1.NW_018487195v1 6076140 11 + 9889416 ACAATCTTTTT------ i aotNan1.NW_018487195v1 C 0 I 1 s micMur3.chr31 16844733 11 + 47401472 acaATTCATTA------ i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220377 11 - 2312742 acaATCCTTTA------ i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328130 11 - 38779656 acaATCTTTTA------ i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823969 11 + 98207768 ACCATATTTAT------ i mm10.chr16 C 0 C 0 s canFam3.chr31 11443979 13 + 39895921 ACAATCTTTTTTT---- i canFam3.chr31 C 0 I 8 s dasNov3.JH568778 639144 16 - 6883506 -cACTTTTGGTAGGAAA i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e macNem1.NW_012019910v1 5919909 346 + 9440265 I e rheMac8.chr3 152667043 353 - 185818997 I a score=65265.000000 s hg38.chr21_GL383578v2_alt 38401 4 + 63917 AAAA s panTro5.chr21 875904 4 + 33445071 AAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560555 4 + 46275980 AAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472658 4 - 13858734 AAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594848 4 + 32716333 AAAA i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159475124 4 - 192294377 AAAA i macFas5.chr3 C 0 I 342 s macNem1.NW_012019910v1 5920255 4 + 9440265 aaaa i macNem1.NW_012019910v1 I 346 I 2 s cerAty1.NW_012002954v1 5659609 4 + 21915920 AAAA i cerAty1.NW_012002954v1 C 0 I 2 s chlSab2.chr2 12304032 4 - 90373283 AAAA i chlSab2.chr2 C 0 I 2 s colAng1.NW_012116933v1 610860 4 - 3237654 AAAA i colAng1.NW_012116933v1 C 0 I 2 s calJac3.chr21 19142325 4 + 50472720 AAAA i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2490892 4 + 13128814 AAAA i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7028446 4 - 14377064 AAAA i cebCap1.NW_016107322v1 I 1 C 0 s aotNan1.NW_018487195v1 6076152 4 + 9889416 AAAA i aotNan1.NW_018487195v1 I 1 C 0 s micMur3.chr31 16844744 4 + 47401472 AAAA i micMur3.chr31 C 0 I 1 s proCoq1.NW_012147997v1 1220388 4 - 2312742 AAaa i proCoq1.NW_012147997v1 C 0 I 1 s otoGar3.GL873528 18328141 4 - 38779656 AAAA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823980 4 + 98207768 AAAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11444000 4 + 39895921 ACAA i canFam3.chr31 I 8 C 0 s dasNov3.JH568778 639160 4 - 6883506 AAAA i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e rheMac8.chr3 152667043 353 - 185818997 I a score=9376.000000 s hg38.chr21_GL383578v2_alt 38405 2 + 63917 AT s panTro5.chr21 875908 2 + 33445071 AT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560559 2 + 46275980 AT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472662 2 - 13858734 AT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594852 2 + 32716333 AT i nomLeu3.chr25 C 0 C 0 s calJac3.chr21 19142329 2 + 50472720 AT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490896 2 + 13128814 AT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028450 2 - 14377064 AT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6076156 2 + 9889416 AT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844749 2 + 47401472 AG i micMur3.chr31 I 1 C 0 s proCoq1.NW_012147997v1 1220393 2 - 2312742 ag i proCoq1.NW_012147997v1 I 1 C 0 s otoGar3.GL873528 18328145 2 - 38779656 AT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75823984 1 + 98207768 -T i mm10.chr16 C 0 I 1 s canFam3.chr31 11444004 2 + 39895921 AC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639164 2 - 6883506 AC i dasNov3.JH568778 C 0 C 0 e chlSab2.chr2 12304036 2 - 90373283 I e colAng1.NW_012116933v1 610864 2 - 3237654 I e manLeu1.NW_012107264v1 630699 1230 + 1337817 M e cerAty1.NW_012002954v1 5659613 2 + 21915920 I e macNem1.NW_012019910v1 5920259 2 + 9440265 I e rheMac8.chr3 152667043 353 - 185818997 I e macFas5.chr3 159475128 342 - 192294377 I a score=21414.000000 s hg38.chr21_GL383578v2_alt 38407 2 + 63917 AA s panTro5.chr21 875910 2 + 33445071 AA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560561 2 + 46275980 AA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472664 2 - 13858734 AA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594854 2 + 32716333 AA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667396 2 - 185818997 aA i rheMac8.chr3 I 353 C 0 s macFas5.chr3 159475470 2 - 192294377 aA i macFas5.chr3 I 342 C 0 s macNem1.NW_012019910v1 5920261 2 + 9440265 aA i macNem1.NW_012019910v1 I 2 C 0 s cerAty1.NW_012002954v1 5659615 2 + 21915920 AA i cerAty1.NW_012002954v1 I 2 C 0 s chlSab2.chr2 12304038 2 - 90373283 AA i chlSab2.chr2 I 2 I 2 s colAng1.NW_012116933v1 610866 2 - 3237654 AA i colAng1.NW_012116933v1 I 2 I 2 s calJac3.chr21 19142331 2 + 50472720 AA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490898 2 + 13128814 AA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028452 2 - 14377064 AA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6076158 2 + 9889416 AA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844751 1 + 47401472 -C i micMur3.chr31 C 0 I 1 s proCoq1.NW_012147997v1 1220395 1 - 2312742 -c i proCoq1.NW_012147997v1 C 0 I 1 s otoGar3.GL873528 18328147 1 - 38779656 -A i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75823986 2 + 98207768 AA i mm10.chr16 I 1 C 0 s canFam3.chr31 11444006 2 + 39895921 AG i canFam3.chr31 C 0 I 2 s dasNov3.JH568778 639166 2 - 6883506 AA i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 630699 1230 + 1337817 M a score=1003928.000000 s hg38.chr21_GL383578v2_alt 38409 79 + 63917 ---------CTT------------TATGCtt-----------------------------------tttgatttga-----------------------------------------------------------------------------------ggattgttttgacaatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa s panTro5.chr21 875912 79 + 33445071 ---------CTT------------TATActt-----------------------------------tttgatttga-----------------------------------------------------------------------------------ggattgttttgacaatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560563 79 + 46275980 ---------CTT------------TATActt-----------------------------------tttgatttga-----------------------------------------------------------------------------------ggattgttttgacaatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472666 79 - 13858734 ---------CTT------------TATACtt-----------------------------------tttgatttga-----------------------------------------------------------------------------------ggattgttttgacaatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594856 79 + 32716333 ---------CTT------------TATTCAt-----------------------------------tttgatttga-----------------------------------------------------------------------------------ggattgttttgacaatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667398 79 - 185818997 ---------CTC------------TATACtt-----------------------------------tttgatttgc-----------------------------------------------------------------------------------ggattgttttgataatatgataaaagttatggttcttctctcaaaat-aaaggtacacaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475472 79 - 192294377 ---------CTC------------TATActt-----------------------------------tttgatttgc-----------------------------------------------------------------------------------ggattgttttgataatatgataaaagttatggttcttctctcaaaat-aaaggtacacaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920263 79 + 9440265 ---------CTC------------TATACtt-----------------------------------tttgatttgc-----------------------------------------------------------------------------------ggattgttttgataatatgataaaagttatggttcttctctcaaaat-aaaggtacacaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659617 81 + 21915920 ---------CTCTT----------TATACtt-----------------------------------tttgatttgc-----------------------------------------------------------------------------------agattgttttgataatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304042 79 - 90373283 ---------CTT------------TATActt-----------------------------------tttgatttga-----------------------------------------------------------------------------------ggattgttttgataatatgataaaagttatggttcttctctcaaaat-aaaggcacacaa i chlSab2.chr2 I 2 C 0 s manLeu1.NW_012107264v1 631950 79 + 1337817 ---------CTT------------TATACtt-----------------------------------tttgatttgc-----------------------------------------------------------------------------------ggattgttttgataatatgataaaagttatggttcttctctcaaaat-aaaggtacacaa i manLeu1.NW_012107264v1 M 1230 C 0 s colAng1.NW_012116933v1 610870 79 - 3237654 ---------CTT------------TATACTT-----------------------------------TTTGATTTGT-----------------------------------------------------------------------------------GGATTGTTTTGATAATATGATGAAAGTTATGGTTCTTCTCTCAAAAT-AAAGGCACACAA i colAng1.NW_012116933v1 I 2 C 0 s calJac3.chr21 19142333 78 + 50472720 ---------CTC------------TATACTT-----------------------------------TTTGATTTGA-----------------------------------------------------------------------------------GATTTA-TTTTGTAATATTATAGAAGTTATGGTCCTTCTTTCAAAAT-ATAAGAACATGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490900 73 + 13128814 -----------C------------TATACTT-----------------------------------TTTGATTTGA-----------------------------------------------------------------------------------GAT----TTTGATAATATTATAGAAGTTATGGTCCTTCTTTCAAGAT-ATAAGAACACAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028454 75 - 14377064 -----------C------------TAT--TT-----------------------------------TTTGATTTGA-----------------------------------------------------------------------------------GATTTATTTTGATGATATTAGAGaagctatggtccttctttcaaaat-ataagtacacaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6076160 77 + 9889416 -----------C------------TATGCTT-----------------------------------TTTGATTTGA-----------------------------------------------------------------------------------GATATATTTTGATAATATTATAGAAGTTATGGTTGTTCTTTCAAAAT-ATAAGAACACAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844753 79 + 47401472 ---------CTT------------TATACTT-----------------------------------TGTGATTTTA-----------------------------------------------------------------------------------ggattcttttgataatgtgataaaagttatggtccttctctcaagat-aaaggcacagaa i micMur3.chr31 I 1 C 0 s proCoq1.NW_012147997v1 1220397 80 - 2312742 ---------ctt------------tatactt-----------------------------------tgtgatttga-----------------------------------------------------------------------------------ggattcttttgataatgtgataaaagttatggttcttctctcaagataaaaagcacagaa i proCoq1.NW_012147997v1 I 1 C 0 s otoGar3.GL873528 18328149 78 - 38779656 ---------ACC------------TGTATTT-----------------------------------TTGGATTTGA-----------------------------------------------------------------------------------GGATTCTTTGGGTAATGTGATAAAAGTTATGGTGCTTCTATCAAGAT-AAAGG-ACAATA i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75823988 202 + 98207768 ------------CTTTGAGAggaatatagttcaatgaaagaacactagcctagcatggttaaggccttggatttaattcccagGTCTTGTAAatcaatcaatcaatctatctatctatctatctatctatcAATAAGGGGAAAACTATACTATCTTAATTGATTGTTTTGATAATGTGATACAAGTCATG----TTTCCTCAAGAT-AAAAGCTGAAAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11444010 79 + 39895921 ---------TTT------------TTTACTT-----------------------------------TCTGAATTGA-----------------------------------------------------------------------------------GTATTCTTTCAATAATATGATAAAAATTATCATCTATCTCCCAGTAT-AAATGCACACAA i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 639168 87 - 6883506 AATTgtggttcc------------attactt-----------------------------------tttgaattga-----------------------------------------------------------------------------------ggatt-ttttaataatataatgaaagttatggctcttctcccaagat-atatgcacataa i dasNov3.JH568778 C 0 C 0 a score=1857518.000000 s hg38.chr21_GL383578v2_alt 38488 134 + 63917 atctacacacctatgttttgggtacaaACGTAAAGGGCTGATAAACCATATGACTCTCATCCACTGTGCTCAAGTTGAGGACATCTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--AAGAAATGGCC s panTro5.chr21 875991 134 + 33445071 atctacacacctatgttttgtgtacaaacgtaaagggctgatagaccatatgactctcatccactgtgctcaagttgaggacatctgCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--AAGAAATGGCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560642 134 + 46275980 atctacacacctatgttttgtgtacaaacgtaaagggctgatagaccatatgactctcatccacggtgctcaagttgaggacatctgCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--AAGAAATGGCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472745 134 - 13858734 atctacacacctatgttttgggtacaaACATAAAGGGCTGATAGACCATATGACTCTCATCCACTGTGCTCAAGTTGAGGACATCTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--AAGAAATGGCC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1594935 134 + 32716333 atctacacacctatgttttgggtacaattttaaagggctgatagaccatatgactctcatccactgtgctcaagttaaggacATTTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--GAGAAATGGCC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667477 134 - 185818997 atctacacacctatgttttgggtacaatttTAAAGGGCTGATGGACCACATGAATCTCATTCACTGTACTCAAGTTAAGGACATCTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--GAGAAATGGCC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475551 134 - 192294377 atctacacacctatgttttgggtacaattttaaagggctgatggaccacatgaatctcattcactgtactcaagttaaggacatctgCTCTAGCTAAAAATGGCATGTATTTTCTGGAAAGGG--GAGAAATGGCC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920342 134 + 9440265 atctacacacctatgttttgggtacaatttTAAAGGGCTGATGGACCACATGAATCTCATTCACTGTACTCAAGTTAAGGACATCTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--GAGAAATGGCC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659698 134 + 21915920 atctacacacctatgttttgggtacaatttTAAAGGGCTGATGGACCATATGAATCTCATTCACTGTACTCAAGTTAAGGACATCTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--GAGAAATGGCC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304121 134 - 90373283 atctacacacctatgttttgggtacaattttaaagggctgatggaccatatgaatctcattcactgtactcaagttaaggacatctgCTCTAGCTAAAAATGACATGTATTCTCTGGAAAGGG--GAGATATGGCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632029 134 + 1337817 atctacacacctatgttttgggtacaatttTAAAGGGCTGATGGACCATATGAATCTCATTCACTGTACTCAAGTTAAGGACATCTGCTCTAGCTAAAAATGGCATGTATTCTCTGGAAAGGG--GAGAAATGGCC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 610949 134 - 3237654 ATCTACACACCTATGTTTTGGGTACAGTTTTAAAGGGCTGATGGACCATATGAATCTCATCTACTGTGCTCAAGTTGAAGACATCTGCTCTAGCTGAAAATGGCATATATTCTCTGGAAAGGG--GAGAAGTGGTC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142411 132 + 50472720 ATCTACACACCTATGTTTTGGGTACAATTTTAAAGAGCCGATAGGCCATATGAATCTAATCCACTGAGCTCAAGTTAAGGACATCTGCTTTAGCT-AAAACGGCATGTATTCTCTGGAAAGGG--GAGAAATGGT- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2490973 131 + 13128814 ATCTACACACCTATGTTTTGGGTACAATTTTAAAGAGCCGATAGGCCATGTGAATCTCATCCACTGAGCTCAAGTTAAGGACATCTGCTCTAGCT-AAAATAACATGTATTCTCT-GAAAGGG--GAGAAATGGT- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028529 132 - 14377064 atctacacacctatgatttgggtgcaattttaaacagccaataggccatatgaatctcatccactgagctcaagttaaggacatctgTTCTAGCT-AAAATGGCATGTGTTCTCTGGAAAGGG--GAGAAATGGT- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6076237 132 + 9889416 ATCTACACACCTATGTTTTGGGTACAATTTTAAAGAGCCAATGGGCCATATGAATCTCATCCACTGAGCTCAAGTTAAAGACATCTGCTCTAGCT-AAAATGGCATGTATTCTCTGGAAAGGG--GAGAAATGGT- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16844832 135 + 47401472 atctgtattcctatgttttgggtacagttttaaagggcttatagaccatatgaatctcatccactgaggtcaaattaaAGTCACTTGCTCTAACT-AAAATGACATGCCTTCCCAGGAAAGGGGAGAGAAATGGCC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220477 135 - 2312742 gtctatattcctatgtcttgggtacagttttaaagggcttatagaccatatgaatctcatccattgaggtcaaattaaagacacttgCTCTAACT-AAAATGACACGCATTCCCTGGAAAAGGGAGAGAAATGGCC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328227 133 - 38779656 ATCTGTATACCTATATTTTGGGTACAAATTTAAGGATTTTATAGACCATAGGAATCTGATCCATTGAGGTCAAACTTAGCACACTTGCTTTAACT-AAAATGGCGTGTGCTGCCTGGAAAGGG--GAGAAAGGGCC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75824190 118 + 98207768 TTCTAGACA--TATGTTATGGCTAAAATTTGATAAAGTCAA--GACCACAT-----------ATTAAGCTTACACTAAGGACACTTGGCCTAGCT-AAAATAGTATAACTTTCCTTGAAAGAG--AAGAAATGACC i mm10.chr16 C 0 C 0 s dasNov3.JH568778 639255 132 - 6883506 atccat-cacatacatttttagtacaatgttaaaggtcctatagaccatatgaatctcatccactgatttcaagttaagaacTGTCATTCTAGTT-ACAATGGTATGCTTTTTCAGGAAAGAG--AAAAAATGGCC i dasNov3.JH568778 C 0 C 0 e canFam3.chr31 11444089 0 + 39895921 C a score=2087568.000000 s hg38.chr21_GL383578v2_alt 38622 162 + 63917 -CTGG----AGATCTCTTCTGTG-----CTCTTGGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGTATTTTAAAGCTAACAGCATAGCCTGAAGCGGATGA--------GATGATGAGATGTTAGC-ACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAActaagtatatg s panTro5.chr21 876125 162 + 33445071 -CTGG----AGATCTCTTCTGTG-----CTCTTGGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGTATTTTAAAGCTAACAGCATAGCCTGAAGCGGATGA--------GATGATGAGATGTTAGC-ACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAActaagtatata i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560776 162 + 46275980 -CTGG----AGATCTCTTCTGTG-----CTCTTGGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGTATTTTAAAGCTAACAGCATAGCCTGAAGCGGATGA--------GATGATGAGATGTTAGC-ACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAActaagtatata i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 472879 162 - 13858734 -CTGG----AGATCTCTTCTGTG-----CTCTTGGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGTATTTTAAAGCTAACAGCATAGCCTGAAGCGGATGA--------GATGATGAGATGTTAGC-ACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAActaagtatata i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595069 162 + 32716333 -CTGG----AGATCTCTTCTGTG-----CTGTTGGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGTATTTTAAAGCTAACAGCATAGCCTGAAGAGGATGA--------GATGATGAGATGTTAGC-ACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAgctaagtatata i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667611 163 - 185818997 -CTGG----AGATCTCTTCTGTG-----CTGTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGCATTTTAAAGCTAACAGCATAGCCTGAAGAGGATGA--------GATGATGCGATGTTAGCAACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAACTAAGTATATA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475685 163 - 192294377 -CTGG----AGATCTCTTCTGTG-----CTGTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGCATTTTAAAGCTAACAGCATAGCCTGAAGAGGATGA--------GATGATGCGATGTTAGCAACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAACTAAGTATATA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920476 163 + 9440265 -CTGG----AGATCTCTTCTGTG-----CTGTTTGCCTCAACATTTAAACA-T-TCAGCCTGAATGC---CTTTAGCATTTTAAAGCTAACAGCATAGCCTGAAGAGGATGA--------GATGATGCGATGTTAGCAACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAACTAAGTATATA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659832 163 + 21915920 -CTGG----ATACTCTCTCTCTC-----TCTTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGCATTTTACTCTCTCTCTCTCTGCCTGAAGAGGATGA--------GATGATGCGATGTTAGCAACATTTGGTTAATACTCTCTCTCTCTC-------------TTAAGTA---------AAACTAAGTATCTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304255 163 - 90373283 -CTGG----AGATCTCTTCTGTG-----CTGTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGCATTTTAAAGCTAACAGTGTAGCCTGAAGAGGATGA--------GATGATGTGATGTTAGCAACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAACTAAGTATATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632163 163 + 1337817 -CTGG----AGATCTCTTCTGTA-----CTGTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGCATTTTAAAGCTAACAGCATAGCCTGAAGAGGATGA--------GATGATGCAATGTTAGCAACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAACTAAGTATCTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611083 163 - 3237654 -CTGG----AGATCTCTTCTGTG-----CTGTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGC---CTTTAGCATTTTAAAGCTCACAGCATAGCCTGAAGAGGATGA--------GATGATGCGATGTTAGCAACATTTGGTTAATAACTTTTTATTAAA-------------TAAAGTA---------AAACTAAGTATATA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142543 165 + 50472720 -CTGG----AGATCTCTTCTGTG-----CTCTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGTTAGCTTTAGCATTTTAAAGCTAGCGGTGTTGCCTAAAGAGGATGA--------GATGATGAGATATTAGCAACATTTGGTTAACCA-TTTTTATTAAA-------------TAAAGTA---------AAgctaagtataca i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2491104 165 + 13128814 -CTGG----AGATCTCTTCTGTG-----CTCTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGTCAGCTTTAGTATTTTAAAGCTACCAGTGTTGCCTAAAGCAGATAA--------GATGATGAGGTATCAGCAACATTTGGTTAACAA-TTTTTGTTAAA-------------TAAAGTA---------AAGCTAAATATACA i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7028661 162 - 14377064 -CTGG----AGATCTCTTCTGCG-----CTCTTTGCCTCAACATTTAAATA-T-TCAGCCTGAATGTTAGCTTTAGCATTTTAAAGCTAGCGGTGTTGCCTAAAGAGGAT-----------ATGATGAGATATCAGCAACATTTGGTTAACAA-TTTTTATTAAA-------------TAAAGTA---------AATCTAAGTATATA i cebCap1.NW_016107322v1 C 0 I 14 s aotNan1.NW_018487195v1 6076369 165 + 9889416 -CTGG----AGATCTCTTCTGTG-----CTCTTTGCCTCAACATTTAAATA-T-TTAGCCTGAATATTAGCTTTAGCATTTTAAAGCTAACGGTGTCGCCTAACGAGGATGA--------GATGATGAGATATCAGCAACATTTGGTTAACAA-TTTTTATTAAA-------------TAAAGTA---------AAgctaagtataca i aotNan1.NW_018487195v1 C 0 I 1 s micMur3.chr31 16844967 162 + 47401472 -CTAG----AGA--TCTTCTGTG-----GTCTTTTCCTCAACATTTAAACATT-TTAGCCTGAATGC---CTTTAGCATTTTAAAGCTATGAGTCTAGCCTAAAAAGGATAA--------GAATATGAGATATTAGCAACATACAATTAATAACTTTTTATTGAA-------------TATAATA---------AAgctgggcatata i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220612 162 - 2312742 -CTTG----AGA--TCTTCTGTG-----CTCTTTTCTTCAACATTTAAATATT-TTAGCCTGAATGC---CTTTAGCATTTTAAAGCTAAGAGTCTAGCCTAAAAAGGATAA--------GAATATGAGATACTAGCAACATCTGGTTAATAACTTTTTATTGAA-------------TACAATA---------AAgctcggcataca i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328360 168 - 38779656 -GTAGAGATAGA--TCTTCTGTG-----CTCTTTTCTTCGACATTGAAATAGT-TTAGCCTGAATGC---CTTTAGCATTTT-AAGCTAAGAATCTAGCCAAAAAAAAAAAAAAAAAAACGGATATGAGATATTAGCAACATCTAGTTAACAATTTTTTATTG------------------AATA---------AAAGTGGGCATATA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75824308 158 + 98207768 -CAGG----AGA-CCCTTCTGTGTTCTACCCTCCCCTCCAGTATTTAAATA-TATCCGCTGCAATGC---CTTTAGCATTTTCTGGCTAAAAA-----ACAACAAAGGAAGA--------GAAGA---AAAGTCAGC-TCATTGAGTTAAAAATATTTTAACA-G-------------TAAAATG---------AAGTTAAGCATACA i mm10.chr16 C 0 C 0 s canFam3.chr31 11444089 148 + 39895921 -CTAG----AGA-ATCTTCCGGG-----CCCTTTATCTCAACATTTCCATA-T-TTAAC-----------CTGTAGTAATTTAGAGCTAAGAGCCTACCCTAAAGAGGATAA--------AAGAATTTACT-----CAATATTTAATTAGTAACTCTTT-CTGAA-------------TAAAATA---------AAActgtggataca i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639387 182 - 6883506 CTAAG----AAATTTCTTCCAAG-----CCCTTTTCATTAACTTTTCAATGCT-GGAGGCTGGGTAA---CTCTAGCGTTTTAGAGGTAAGAGCCTGACCTAAAGAGGACGA--------GAGAATTTATT-----CAAcatttagttaataactttttactgaacacctactatgtgcagagtaccattgtagaagctggggaaaca i dasNov3.JH568778 C 0 C 0 a score=13553.000000 s hg38.chr21_GL383578v2_alt 38784 4 + 63917 gcga-- s panTro5.chr21 876287 4 + 33445071 gcga-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560938 4 + 46275980 gcga-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473041 4 - 13858734 gcga-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595231 4 + 32716333 gcga-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667774 4 - 185818997 AGGA-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475848 4 - 192294377 AGGA-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920639 4 + 9440265 AGGA-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659995 4 + 21915920 AGGA-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304418 4 - 90373283 AGGA-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632326 4 + 1337817 AGGA-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611246 4 - 3237654 AGGA-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142709 3 + 50472720 -ggg-- i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2491270 3 + 13128814 -GGA-- i saiBol1.JH378168 I 1 C 0 s aotNan1.NW_018487195v1 6076535 3 + 9889416 -ggg-- i aotNan1.NW_018487195v1 I 1 C 0 s micMur3.chr31 16845129 4 + 47401472 acga-- i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220774 4 - 2312742 agga-- i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328528 4 - 38779656 AGGA-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75824466 4 + 98207768 AGGC-- i mm10.chr16 C 0 C 0 s canFam3.chr31 11444237 3 + 39895921 ggg--- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639569 4 - 6883506 --gaac i dasNov3.JH568778 C 0 C 0 e cebCap1.NW_016107322v1 7028823 14 - 14377064 I a score=1091165.000000 s hg38.chr21_GL383578v2_alt 38788 75 + 63917 tgttcaaaccattccacaccagctccactgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa s panTro5.chr21 876291 75 + 33445071 tgttcaaagcattccacactagctccactgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14560942 75 + 46275980 tgttcaaagcattccacactagctccactgaacttacattccaaagaggaagaaag-acaataagcaactaaataa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473045 75 - 13858734 tgttcaaaccattccacactagctccactgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595235 75 + 32716333 tgttcaaaccattccacactagctccactgaacttgcatgccaaagaggaagaaag-gcaataagcaactaaataa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667778 75 - 185818997 CGTTCGAACCATTCCACACTAGCTGTACTgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475852 75 - 192294377 CGTTCGAACCATTCCACACTAGCTGTACTgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920643 75 + 9440265 CGTTCAAACCATTCCACACTAGCTGTACTgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5659999 75 + 21915920 TGTTCAAACCATTCCACACTAGCCTCTCTCTCTCTCTATTCCAAAGAGGAAGAAAG-GCAATAAGCAACTAAATAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304422 75 - 90373283 TGTTCAAACCATTCCACACTAGTTGCACTgaacttatattccaaagaggaagaaag-gcaataagcaactaaataa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632330 75 + 1337817 CGTTCAAACCATTCCACACTAGCTGTACTgaacttacattccgaagaggaagaaag-gcaataagcaactaaataa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611250 75 - 3237654 TGTTCAAACCATTCCACACTAGctgcactgaacttacattccaaagaggaagaaag-gcaataagcaactaaataa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142712 75 + 50472720 tgttcaaaccatttcacactagctccactgaacttacattccaaagaggaagaaag-gcaataaggaactaaataa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491273 75 + 13128814 TGTTCAAACCATTTCACACTAGCTCCACTGAACGTACATTCCAAAGAAGAAGAAAG-GCAATAAGGAAGTAAATAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028837 75 - 14377064 TGTTCAAACCATTTCACActagctccactgaacttacattccaaagaggaagaaag-gtaataaggaactaaataa i cebCap1.NW_016107322v1 I 14 C 0 s aotNan1.NW_018487195v1 6076538 75 + 9889416 tgttcaaaccatttcacactagctccactgaacttatattccaaagaggaagaaag-gcaataaggaactaaataa i aotNan1.NW_018487195v1 C 0 I 305 s micMur3.chr31 16845133 73 + 47401472 tgttcaaaccctaccatactagctccaccaaacttatgc--aggagaggaagaaat-gtaataaacaactaaataa i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220778 75 - 2312742 tgttcaaaccataccatactaactccaccaaacttatgcttcaaagaggaagaaag-gcagtaagcaactaaataa i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328532 62 - 38779656 TGTTCAAACCACACCATACTG--------------ATGTTTTAAAGAAGAAGAAAGCCCAATACAGAACTAAATAA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75824470 75 + 98207768 TGTCTATACTACACCACACTAACTCTATGTAGTTTACTTTCAGAATGGTAAGCAAG-GCAATAAGCAGCTAAATAA i mm10.chr16 C 0 I 1 s canFam3.chr31 11444240 68 + 39895921 tgtttaagccataccacaccagctccaccaagctaaagttccaaagggagagaaag-gcaataaacagg------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639573 64 - 6883506 -ggtccaaggctaccacaccaatgtcatggagcttatgtctcaaag-----------gcagtaagcaacgaaataa i dasNov3.JH568778 C 0 I 1 a score=8230.000000 s hg38.chr21_GL383578v2_alt 38863 1 + 63917 t s panTro5.chr21 876366 1 + 33445071 t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561017 1 + 46275980 t i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473120 1 - 13858734 t i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595310 1 + 32716333 c i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667853 1 - 185818997 t i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475927 1 - 192294377 t i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920718 1 + 9440265 t i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660074 1 + 21915920 T i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304497 1 - 90373283 t i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632405 1 + 1337817 t i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611325 1 - 3237654 t i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142787 1 + 50472720 t i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491348 1 + 13128814 T i saiBol1.JH378168 C 0 I 290 s cebCap1.NW_016107322v1 7028912 1 - 14377064 t i cebCap1.NW_016107322v1 C 0 C 0 s micMur3.chr31 16845206 1 + 47401472 c i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220853 1 - 2312742 c i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328594 1 - 38779656 C i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11444308 1 + 39895921 t i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639638 1 - 6883506 c i dasNov3.JH568778 I 1 C 0 e mm10.chr16 75824545 1 + 98207768 I e aotNan1.NW_018487195v1 6076613 305 + 9889416 I a score=67558.000000 s hg38.chr21_GL383578v2_alt 38864 5 + 63917 aaatg s panTro5.chr21 876367 5 + 33445071 aaatg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561018 5 + 46275980 aaatg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473121 5 - 13858734 aaatg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595311 5 + 32716333 aaatg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667854 5 - 185818997 acatg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475928 5 - 192294377 acatg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920719 5 + 9440265 acatg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660075 5 + 21915920 ACATG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304498 5 - 90373283 acatg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632406 5 + 1337817 acatg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611326 5 - 3237654 aaatg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19142788 5 + 50472720 aaatg i calJac3.chr21 C 0 I 292 s saiBol1.JH378168 2491639 5 + 13128814 aaaTG i saiBol1.JH378168 I 290 C 0 s cebCap1.NW_016107322v1 7028913 5 - 14377064 aaatg i cebCap1.NW_016107322v1 C 0 C 0 s micMur3.chr31 16845207 5 + 47401472 aaatg i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220854 5 - 2312742 aaatc i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328595 5 - 38779656 AAGTG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75824546 5 + 98207768 AAGTG i mm10.chr16 I 1 C 0 s canFam3.chr31 11444309 5 + 39895921 aaatg i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639639 5 - 6883506 aaacg i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6076613 305 + 9889416 I a score=38220.000000 s hg38.chr21_GL383578v2_alt 38869 2 + 63917 aa s panTro5.chr21 876372 2 + 33445071 aa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561023 2 + 46275980 aa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473126 2 - 13858734 aa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595316 2 + 32716333 aa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667859 2 - 185818997 aa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475933 2 - 192294377 aa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920724 2 + 9440265 aa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660080 2 + 21915920 AA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304503 2 - 90373283 aa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632411 2 + 1337817 aa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611331 2 - 3237654 aa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143085 2 + 50472720 aa i calJac3.chr21 I 292 C 0 s saiBol1.JH378168 2491644 2 + 13128814 AA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7028918 2 - 14377064 aa i cebCap1.NW_016107322v1 C 0 I 304 s micMur3.chr31 16845212 2 + 47401472 aa i micMur3.chr31 C 0 I 1 s proCoq1.NW_012147997v1 1220859 2 - 2312742 aa i proCoq1.NW_012147997v1 C 0 I 1 s otoGar3.GL873528 18328600 2 - 38779656 AA i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75824551 2 + 98207768 AA i mm10.chr16 C 0 I 1 s canFam3.chr31 11444314 2 + 39895921 aa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639644 2 - 6883506 aa i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6076613 305 + 9889416 I a score=-36569.000000 s hg38.chr21_GL383578v2_alt 38871 2 + 63917 -tg s panTro5.chr21 876374 2 + 33445071 -tg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561025 2 + 46275980 -tg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473128 2 - 13858734 -tg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595318 2 + 32716333 -tg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667861 2 - 185818997 -ag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475935 2 - 192294377 -ag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920726 2 + 9440265 -ag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660082 2 + 21915920 -AC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304505 2 - 90373283 -ag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632413 2 + 1337817 -ag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611333 2 - 3237654 -ag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143087 2 + 50472720 -cg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491646 2 + 13128814 -CA i saiBol1.JH378168 C 0 C 0 s micMur3.chr31 16845215 1 + 47401472 -a- i micMur3.chr31 I 1 C 0 s proCoq1.NW_012147997v1 1220862 1 - 2312742 -a- i proCoq1.NW_012147997v1 I 1 C 0 s otoGar3.GL873528 18328603 1 - 38779656 -A- i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75824554 1 + 98207768 -A- i mm10.chr16 I 1 I 3 s canFam3.chr31 11444316 1 + 39895921 -t- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639646 2 - 6883506 ca- i dasNov3.JH568778 C 0 C 0 e aotNan1.NW_018487195v1 6076613 305 + 9889416 I e cebCap1.NW_016107322v1 7028920 304 - 14377064 I a score=1345280.000000 s hg38.chr21_GL383578v2_alt 38873 93 + 63917 aagtaatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgcaatAAGTTAAGGAAG s panTro5.chr21 876376 93 + 33445071 aagtaatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggTGCGATAAGTTAAGGAAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561027 93 + 46275980 aagtaatttcagatagggttaagtgttatggaggaaataattggaatgatgaaatagagaaa----actggagaggaggTGCGATAAGTTAAGGAAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473130 93 - 13858734 aagtaatttccaatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggTGCGATAAGTTAAGGAAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595320 93 + 32716333 aagtgatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----accagagaggaggTGCGATAAGTTAAGGAAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667863 93 - 185818997 aagtgatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgtgATAAGTTAAGGAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159475937 93 - 192294377 aagtgatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgtgATAAGTTAAGGAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920728 93 + 9440265 aagtgatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgtgATAAGTTAAGGAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660084 93 + 21915920 TCTCTCTCTCTCTTAGGGTTAAGTGTTATAGAGGAAATAATTGGAATGATGAAATAGAGAAA----ACTGGAGAGGAGGTGTGATAAGTTAAGGAAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304507 93 - 90373283 aagtgatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgtgGTAAGTTAAGGAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632415 93 + 1337817 aagtgatttcagatagggttaagtgttatagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgtgataagttaaggaag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611335 93 - 3237654 aagtggtttcagatagggttaagtgttgtagaggaaataattggaatgatgaaatagagaaa----actggagaggaggtgtgataagttaaggaag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143089 91 + 50472720 aagtgatttcacatagggttaagtgt--tagaggaaataattggaatgatggaatagagaaa----actggagaggaggTATGATAAGTTAAGGAAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491648 91 + 13128814 AAGTAATTTCACATAGGGTTAAGTGT--TAGAGGAAATAATTGGGATGATGAAATAGAGAAA----ACTGGAGAGGAGGTATGATAAGTTAAGGAAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029224 91 - 14377064 aagtgatttcacatagggttaagtgt--tagaggaaataattggaatgatgaaatagagaaa----actggagaggaggTATGATAAGTTAAGGAAG i cebCap1.NW_016107322v1 I 304 C 0 s aotNan1.NW_018487195v1 6076918 91 + 9889416 aagtgatttcacatagggttaaatgt--tagaggaaataattggaatgatgaaatagagaaa----attggagaggaggtatgataagttaaggaag i aotNan1.NW_018487195v1 I 305 C 0 s micMur3.chr31 16845216 93 + 47401472 aggtgatttcaggtagggttatgtgttataaaggaaaTAGCTGGAATGATGAAATAAAGACA----ATTGGAGAGCAGATGGGACTGGATAAGGAAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220863 93 - 2312742 aggtgatttcaggtagggttatgtgttataaaggaattaattagaatgatgaaatagagaca----actggagagcaggtgggatgggctaaggaag i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328604 65 - 38779656 AGGTGATTTCAGGTAGGGCTCTGTGTTATAAA-------------------------CGACA----CCTGGATAGAGG--GGGACAGG-TAAGGAAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75824558 89 + 98207768 TAAGAATTTCCAGTGGAGTTCC-TGTTATAATAGTAAAACTCAGACTAAAGAAGT---GCTC----ACTAGAAAGGAAGCAGTGTGGTTTAATGAAG i mm10.chr16 I 3 I 3959 s canFam3.chr31 11444317 93 + 39895921 aagtgacttcagatagagttaagtgctagaaagaaa----ttgggggaatgagatagaaataaatgactgacgaggaggtgggAGAGATTACAGAAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639648 89 - 6883506 aagtgatttcagatagagttaattgttataaaggaaataattggggtgatgagataga--------actgcagaggaggagggataggttagggaag i dasNov3.JH568778 C 0 C 0 a score=1145442.000000 s hg38.chr21_GL383578v2_alt 38966 89 + 63917 ATACAGTAGTTTA-TTGTGAATGAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC s panTro5.chr21 876469 89 + 33445071 ATACAGTAGTTTA-TTGTGAATGAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561120 89 + 46275980 ATACAGTAGTTTA-TTGTGAATGAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473223 90 - 13858734 ATACAGTAGTTTATTTTTGAATGAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595413 89 + 32716333 ATACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATGTGATTACTGTATCAGTATCTGTGGTCATGCCTCC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152667956 89 - 185818997 ACACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476030 89 - 192294377 ACACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920821 89 + 9440265 ACACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660177 89 + 21915920 ATACAGTAGTTTA-TTTTGAATTAAGATCCT-CTCTCTCTCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCTTGCCTCC i cerAty1.NW_012002954v1 C 0 I 12 s chlSab2.chr2 12304600 89 - 90373283 ACACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGGAATGCCTCTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCACGCCTCC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632508 89 + 1337817 atacagtagttta-ttttgaattaaggtcca-gggaatgcctcTTTTTT---ATTAGATATGATTACTGTACCAATATCTGTGGTCATGCCTCC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611428 89 - 3237654 atacagtagttta-ttttgaattaaggtcca-gggaatgcctcTTTTTT---ATTAGATAGGATTACTGTACCAATATATGTGGTCACACCTCC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143180 87 + 50472720 ATACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGAAATCCCTCTTTT-----ATTAGATATGATTGCTATAAGAATATCTGTGGTCATGACTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491739 93 + 13128814 ATACGGTAGTTTA-TTTTGAATTAAGGTCCACGGGAATCCCTCTTTTTTTAAATTAGATATGATTACTCTAAGAATATCTGCAGTCATGACTCC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029315 90 - 14377064 ATACAGTAGTTTA-TTTTGAATTAAGGTCCA-GGGAATCCCTCTTTTTTT--GTTAGATATGATTGCTATAAGAATATCTGTGGCCATGACTCC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077009 86 + 9889416 atacagtagttta-ttttgaattaaggtcca-gggaatccctcTTT------ATTAGATATGATTGCTATAAGAATATCTGTGGTCATGACTCC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16845309 86 + 47401472 GTACCACATTTTG-TCTTATATTGGGAGTCA-AGGAATG---CTTTTTT---ATTAGATAGGACTGCGATATCAATATCTGTGGCCATGCCTCC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1220956 86 - 2312742 gtaccatattttg-ttttaaattgggagtca-gggaatg---cATTTTT---ATTAGATTGGACTGCTGTACCATTATCTGTGGCCATGCCTCC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18328669 72 - 38779656 GTACCATAGTTTG-TTTTAAATTGGGAGTCA-GAGAATG---CTTTTTT---ATTAGATTGAGTCACTATACCA--------------GGCCTC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11444410 84 + 39895921 -----GCACTTTA-TTTTGAATTGAGCACCA-AAGAATGTGTCTCTTTG---GTTAGCTTGGATTGCTACACCAATATCACTAGTCATGCTTCC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639737 84 - 6883506 -----gtaattta-tttttgattagaggtca-gggaatgcttctctTTT---ATTAGATTGGATTGCCGTATTAATATCTATGGTCATGTCTCC i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75824647 3959 + 98207768 I a score=162954.000000 s hg38.chr21_GL383578v2_alt 39055 12 + 63917 TCTACCACATTA s panTro5.chr21 876558 12 + 33445071 TCTACCACATTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561209 12 + 46275980 TCTACCACATTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473313 12 - 13858734 TCTACCACATTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595502 12 + 32716333 TCTACCACATTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668045 12 - 185818997 TCTACCACATTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476119 12 - 192294377 TCTACCACATTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920910 12 + 9440265 TCTACCACATTA i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12304689 12 - 90373283 TCTACCACATTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632597 12 + 1337817 TCTACCACATTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611517 12 - 3237654 TCTACCACATTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143267 12 + 50472720 TCTACCACATTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491832 12 + 13128814 TCTACCACATTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029405 12 - 14377064 TCTACCACATTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077095 12 + 9889416 TCTACCACATTA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16845395 12 + 47401472 TCTACTGTAGTG i micMur3.chr31 C 0 I 5 s proCoq1.NW_012147997v1 1221042 12 - 2312742 TCTACTATAGTG i proCoq1.NW_012147997v1 C 0 I 5 s otoGar3.GL873528 18328741 12 - 38779656 TCTACAATACTG i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11444494 12 + 39895921 CCTGCTACATTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639821 12 - 6883506 CCAACTACCTTA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75824647 3959 + 98207768 I e cerAty1.NW_012002954v1 5660266 12 + 21915920 I a score=1799530.000000 s hg38.chr21_GL383578v2_alt 39067 131 + 63917 CAACTATCAGTGC--TTTACAATATTTCAA-GAACTCCATGAATATTTGTAGATTGGTGAC--------TTTA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtatagattctagcatcagactgc-ctaagattgg s panTro5.chr21 876570 131 + 33445071 CAACTATCAGTGC--TTTACAATATTTCAA-GAACTCCATGAATATTTGTAGATTGGTGAC--------TTTA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtatagattctagcatcagactgc-ctaagattgg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561221 131 + 46275980 CAACTATCAGTGC--TTTACAATATTTCAA-GAACTCCATGAATATTTGTAGATTGGTGAC--------TTTA----------TCTCAGAATTGATGGAGAAaatatcatggctaagagtatagattctagcatcagactgc-ctaagattgg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473325 131 - 13858734 CAACTATCAGTGC--TTTACAATATTTCAA-GAACTCCATGAATATTTGTAGATTGGTGAC--------TTTA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtatagattctagcatcagactgc-ctaagattgg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595514 131 + 32716333 CAACTATCAGTGC--TTTACAGTATTTCAA-GAACTCCATGATTATTTGTAGATTGGTACC--------TTTA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtatagattctagcatcagactgc-ctaagattgg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668057 132 - 185818997 CAACTATCAGTGC-TTTTACAATATTTCAA-GAACTCCATGAATATTTGTAGAGTGGTGGC--------TTGA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtgtagattctagcatcagattgc-ctaagattgg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476131 132 - 192294377 CAACTATCAGTGC-TTTTACAATATTTCAA-GAACTCCATGAATATTTGTAGAGTGGTGGC--------TTGA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtgtagattctagcatcagattgc-ctaagattgg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5920922 132 + 9440265 CAACTATCAGTGC-TTTTACAATATTTCAA-GAACTCCATGAATATTTGTAGAGTGGTGGC--------TTGA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtgtagattctagcatcagattgc-ctaagattgg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660278 132 + 21915920 CTACTATCAGTGC-TTTTACAATATTTCAA-GAACTCCATGAATATTTGTACTCTCTCTCT--------CTCT----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtgtagattctagcatcagactgc-ctaagattgg i cerAty1.NW_012002954v1 I 12 C 0 s chlSab2.chr2 12304701 132 - 90373283 CAACTATCAGTGC-TTTTACAATATTTCAA-GAACTCCATGAATATTTGTAGAGTGGTGAC--------TTGA----------TTTCAGAATTGATGGAGAAaatatcatggctaagagtgtagattctagcatcagactgc-ctaagattgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632609 132 + 1337817 CAACTATCAGTGC-TTTTACAATATTTCAA-GAACTCCATGAATATTTGTAGAGTGGTGAC--------TTTA----------TTTCAGAATTGATGGAGAAAATACCAtggctaagagtgtagattctagcatcagactgc-ctaagattgg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611529 132 - 3237654 CAACTATCAGTGC-TTTTAGAATATTTCAA-GAACTCCATGAATATTTGTGGAGTAGTGAC--------TTTA----------TTTCAGAATTAATGGAGAAaatatcatggctaagagtatagattctagcatcagattgc-ctaagattgg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143279 136 + 50472720 CAACTATCAGCGC--TTTATGATATTTCAA-GCACTCCATGAATATTTCTAGATTGGTGATTTTATTTATTTA----------TTTCAGAATTGATGGAGAAAAT---Atggctaagagtatagattttggcatcagactgc-ctaagcttgg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491844 132 + 13128814 CAACTATCAGTGC--TTTACGATATTTCAA-GCACTCCATGAATATTTATAGATTGGTGAT----TTTATTTA----------TTTCAGAATTGATGGAGAAAAT---Atggctaagagtatagattctggcatcagactgc-ctaagcttgg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029417 132 - 14377064 CAACTATCAGTGC--TTTACGATATTTCAA-GCACTCCATGAATATTTATAGATTGGTGAT----TTTATTTA----------TTTCAGAATTGATGGAGAAAAT---Atggctaagaatatagattctggcatcagagtgc-ctaagcttgg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077107 132 + 9889416 CAACTATCAGTAC--TTTACGATATTTCAA-GCACTCCATGAATATTTATAGATTGGTGAT----TTTATTTA----------TTTCAGAATTGATGGAGAAAAT---Atggctaagagtatagattctggcatcagactgc-ctaagcttgg i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16845412 139 + 47401472 CACCTATCAGTGC--TTTACAATATTTCAA--CACTTTGTGAATATTTATTGATTGGTAAT--------TTTATTTAACT-TTTTTCAGGATTGATGGAGAAAATATCCtggctaagagtatagattctgacatcaaactgc-ataagcttga i micMur3.chr31 I 5 C 0 s proCoq1.NW_012147997v1 1221059 139 - 2312742 CACCTATCAGTGC--TTTATAGTATTTCAA--CACTTCATGAATATTTATTGATTGGTAAT--------TTTATTTAATT-TTTTTCAGAATTGATGGAGAAAATATCCtggctaagagtatagattctggcatcaaattgc-gtaagcttga i proCoq1.NW_012147997v1 I 5 C 0 s otoGar3.GL873528 18328754 136 - 38779656 -ACCTATCAGAGC--TTTACGATATTTCAA--CACTT-ATGAATATTTACTGAGTAGTAAT--------TTTGTTTAACT-ATTTTCAGAATTGATGGAGAAaatatcatggctaacggtacagattctggcatcaaactgc-gtcagcttg- i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11444506 141 + 39895921 CACTTATCAGAGTGTTTGACAATATTTCAAAGTATTTTGTGAATATTTATTGATTGGTAAC--------TATATTTAATT---TTTCAGGATAGATGGAGAAaatatcatgtctgaaagtatagattctggcatcagactgc-ccggacttga i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639833 136 - 6883506 AAACTGTGAGAGT--CTTACAACTTTTCAA-GCACTTCTTGAATATTTATTGAT--Gtaat--------tttatttaattttttttCAGA----GCAGAGAAAATATTCtggctaagagtatagattctggccgcacactgctttgagcttga i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75824647 3959 + 98207768 I a score=3887259.000000 s hg38.chr21_GL383578v2_alt 39198 268 + 63917 atccttgctttgtccttt-actgacaatgtagttggagggaagttacttaatcttgttgactttctatttcttctagtttatctctaaaatgggaaaaatagtattacctacatgata--------aggaggattaaataggttaagatatgtaaagagcttGTGTATTACATTTTCTGGTTATccactccagaattcagtggcttcaagtaacaggcattt------------t-atg--atatctcacaattttctgggtcagaaatgtaggcagatctcaaaagggcaa s panTro5.chr21 876701 268 + 33445071 atccttgctttgtccttt-actgacaatgtagttggagggaagttacttaatcttgttgactttctgtttcttctagtttatctctaaaatgggaaaaatagtattacctacatgata--------aggaggattaaataggttaagatatgtaaagagcttGTGTATTACATTTTCTGGTTGTccactccagaattcagtggcttcaaataacaggcattt------------t-atg--atatctcacaattttctgagtcagaaatgtaggcagatctcaaaagggcaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561352 268 + 46275980 atccttgctttgtccttt-actgacaatgtagttggagggaagttacttaatcttgttgactttctgtttcttctagtttatctctaaaatgggaaaaatagtattacctacatgata--------aggaggattaaataggttaagatatgtaaagagcttGTGTATTACATTTTCTGGTTGTccactccagaattcagtggcttcaaataacaggcattt------------t-atg--atatctcacaattttctgagtcagaaatgtaggcagatctcaaaagggcaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473456 268 - 13858734 atccttgctttgtccttt-actgacaatgtagttggagggaagttacttaatcttgctgactttctgtttcttctagtttatctctaaaatgggaaaaatagtattacctacacgata--------aggaggattaaataggttaagatatgtaaagagcttGTGTATTACATTTTCCGGTTGTccactccagaattcagtggcttcaaataacaggcattt------------t-atg--atatctcacagttttctgggtcagaaatgtaggcagatctcaaaagggcaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595645 268 + 32716333 atccttgctttgtccttt-agtgacaatgtagttggagggaagttacttaatcttgttgactttctgtttcttctagtttacctttaaaatgggaaaaatagtattacctacgtgata--------gggaggattaaataggttaatatatgtaaagagcttGTGTATTACATTTTCTGGTTGTccactccagaactcagtggcttcaaataacagggattt------------t-ata--atatctcacaattttctgggtcagaaatgtaggcagatctcaaaagggcaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668189 268 - 185818997 atccttgctttgtccttt-actgacaatgtagttggaagcaagttacttaatcctgttgactttctgtttcttctattttatctctaaaatgggaaaaatagtattacctatgtgata--------aggaggattaaataggttaatatatgtaaagaacttGTGTATTACATGTTCTGGTTGTccactccggaactcagtggcttcaaataacaggcattt------------t-atg--atatctcacaattttctgggtcaggaatgtaggcagatctcaaaagggcaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476263 268 - 192294377 atccttgctttgtccttt-actgacaatgtagttggaagcaagttacttaatcctgttgactttctgtttcttctattttatctctaaaatgggaaaaatagtattacctatgtgata--------aggaggattaaataggttaatatatgtaaagaacttGTGTATTACATGTTCTGGTTGTccactccggaactcagtggcttcaaataacaggcattt------------t-atg--atatctcacaattttctgggtcaggaatgtaggcagatctcaaaagggcaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921054 268 + 9440265 atccttgctttgtccttt-actgacaatgtagttggaagcaagttacttaatcctgtggactttctgtttcttctattttatctctaaaatgggaaaaatagtattacctatgtgata--------aggatgattaaataggttaatatatgtaaagaacttGTGTATTACATGTTCTGGTTGTccactccggaactcagtggcttcagataacaggcattt------------t-atg--atatctcacaattttctgggtcaggaatgtaggcagatctcaaaagggcaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660410 268 + 21915920 atccttgctttgtccttt-actgacaatgtagttggaggcctctctctctctcttgttgactttctgtttcttttattttatctctaaaatgggaaaaatactctctctctctctata--------aggaggattaaataggttaatatatgtaaagagcttGTGTATTACTCTCTCTCTCTCTccactctagaactcagtggcttcaaataacaggcattt------------t-atg--atatcctctctctctctctgtcaggaatgtaggcagatctcaaaagggcaa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12304833 268 - 90373283 atccttgctttgtccttt-actgacaatgtagttggaggcaagttgcttaatcttgttgactttctgtttcttctattttatctctaaaatgggaaaaatagtattacctgtgtgata--------aggaggattaaataggttaatatatgtaaagagcttGTGTATTACATGTTCTGGTTGTccactctagaactcagtggcttcaaataacaggcattt------------t-atg--atgtctcgcaattttctgggtcaggaatgtaggcagatctcaaaagggcaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 632741 268 + 1337817 atccttgctttgtccttt-actgacaatgtagttggaggcaagttacttcatcttgttgactttctgtttcttctattttatctctaaaatgggaaaaatagtattacctatgtgata--------aggaggattaaatacgttaatatatgtaaagagcttGTGTATTACATGTTCTGGTTGTccactctagaactcagtggcttcaaataacaggcattt------------t-atg--atatctcgcaattttctgggtcaggaatgtaggcagatctcaaaagggcaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611661 268 - 3237654 atccttgctttgtccttt-actgacaatgtagttggagggaagttacttaatcttgttgactttctgtttcttctattttatctctaaaatgggaaaaatagtattacctatgtggta--------aggaggattaaataggttaatatatgtaaacagcttGTGTATTACATGTTCTGGTTGTccaccccagaactcagtggcttcaaataacaggcattt------------t-atg--atgtctcacaattttctggatcaggaatgtaggcagatctcaaaagggcag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143415 276 + 50472720 atccttgctctgtccttt-actggcaatgttgttggaggcaagttatttaatcttgttgaccttctgcttcttctagtttatctctaaaatgggaaaaatagtattacctatgtgataaggctgttaggaggattaaataggttaataaatgtaaagaacttGTCTATTACATTTTCTGGTTGTGCactccagaattcagtggcttcaaataacagatattt------------t-atg--atatctaccaattttctgggtgagaaatgtaggcagatctcaaaagggcaa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2491976 276 + 13128814 atccttgctctgtccttt-actggcaatgttgttggaagcaagctatttaatcttgttgatcttctgtttcttcttgttaatctctaaaatgggaaaaatagtattacgtatgtgataaggctgttaggaggattaaataggttaataaatgtaaagagctCGTCTATTACATTTTCTGGTTGTACactccagaattcagtggcttcaaataacagatattt------------t-atg--atatctaacaagtttctgggtcaggaatgtaggcagatctcaaaagggcaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029549 276 - 14377064 atccttgctctgtccttt-actggcaatgttgttggaggcaagttatttaatcttgttgaccttctgtttcttctagtttatctctacaatgggaaaaatagtattacctatgtgataaggctgttaggaggattaaataggttaataaatgtaaagagcttGTCTATTACGTTTTCTGGTTGTGCactccagaattcagtgccttcaaataacagatattt------------t-atg--atgtctaacaattttctgggtcaagaatgtaggcagatctcaaaagggcaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077239 276 + 9889416 atccttgctctgtccttt-actggcaatgttgtaggaggcaagttatttaatcttgttgaccttctgtttcttctagtttatgtctaaaatgggaaaaatactattacctatgtgataaggctgttaggagaattaaataggttaataaatgtaaagagcttGTCTATTACATTTTCTGGTTGTGCactccagaattcagtggcttcaaataacagatattt------------t-atg--atatctaacaattttctgggtcaggaatgtaggcagatctcaaaagggcaa i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16845551 277 + 47401472 atccttgctctgtccttt-actagtaatgtgattgtgggcaagttgcttaatgttgttgactttcagtttcttcaggcttatctctaaaatggggcacatgacattacctacatgattagactgctatgaggagtaaataggttaatgaatgtgaagagtttGTGTATTACATTTTCTGA-TGTGCacgccataacttagtggctttgagtaacagctattg------------g-atgatatatctcacaatgttctgggtcagaaatgtagacagatctcaaaggggaaa i micMur3.chr31 C 0 I 279 s proCoq1.NW_012147997v1 1221198 277 - 2312742 atccttgctctgaccttt-actagtaatgtggttgtgggcaagttgcttaatattgttgactttcagtttcttcaggcttatctctaaaattggacaaatgacattacctacatgattagactgttatgaggagtaaataggttaatgaatgtgaagagcttGTGTATTACATTTTCCAA-TGTGCactctataacttagtggctttgaataacagctattt------------t-ataatatatttcacaattttctgggtcaggaatgtagacagatctcaaaggggaaa i proCoq1.NW_012147997v1 C 0 I 1 s otoGar3.GL873528 18328890 275 - 38779656 atctttgctctgtctttt-actagtaatgtggttgtgggcaagatacttaatcttgttgactttcagtttcttcgggcttatctctaaaatggggcaaataatattacctgtgtgattagaccgttccgaggattcaatatgatgatcaacgtgaaaggcttGTGTATTACATTTTCAGA-TGTCCGctctataacttagtagttttgaatcacagcaattt------------t-atg--atatctcacaaatttttgagtcaggaatatagacagatctccaagggggca i otoGar3.GL873528 C 0 I 4 s mm10.chr16 75828606 265 + 98207768 ACCTTTGCTTCACCCTCT--CCAGTGCTGAGGTAGAGGGGAACACACTTTGTTGTGTTGACcctcagtttcttcagctttgtgtctagcatgaacaaaatcatattacctatatgattaggacattgcgacaattaaat---tatagtcatgcaaGAACCTCACATATTACACCTTTTGA-TGTTCATCTCATATGT--gtagcattaaa----agacattt------------taatg--ataatgcccaattatttgcatcagatcaatagacagagctcaaagggaca- i mm10.chr16 I 3959 C 0 s canFam3.chr31 11444647 271 + 39895921 attcttgctctgcccttttactagcaatgtgactgtggacaagttacttaatctcattaatcttcagtttcttcaggcttatttctaaaatggggaaaatagtattacctacatgattagactattatgaggattaaataggttaataaaagtaaagAAAT-GTACATTACATTTTCTCA-TACccaccctagttcttagtgggcttgaaaaactacaattt------------t------atatctcgcagttttgtgggtcaggaacatgggtagatctcaaaggagag- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 639969 258 - 6883506 atcctttctctgtccttt-actagtagtgtggttatgggcaagttccttaatcttgttaagcttcaatttcttcaggcttgtctctgaaatggagataagagtatta--tagattgtt--------aggaggattaactagattaatgaacataaggagtttgtatagtatctgTTTTGA-TGTCCACCCCAGAACACAGTGGTGTTAAACAAC---CATTTAGATCCAAAACCc-aaa--ctgccctaaaactttgtggctttagaaaacagaca---------------- i dasNov3.JH568778 C 0 C 0 a score=201126.000000 s hg38.chr21_GL383578v2_alt 39466 15 + 63917 ttcttctccttcatt s panTro5.chr21 876969 15 + 33445071 ttcttctccttcatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561620 15 + 46275980 ttcttctccttcatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473724 15 - 13858734 ttcttctccttcatt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595913 15 + 32716333 ttcttctccttcatt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668457 15 - 185818997 ttcttctccttcatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476531 15 - 192294377 ttcttctccttcatt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921322 15 + 9440265 ttcttctccttcatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660678 15 + 21915920 ttcttctccttcatt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305101 15 - 90373283 ttcttctccttcatt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633009 15 + 1337817 ttcttctccttcatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611929 15 - 3237654 ttcttctccttcatt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143691 15 + 50472720 ttcttctccttcatt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492252 12 + 13128814 ttctt---cttcatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029825 12 - 14377064 ttctc---cttcatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077515 15 + 9889416 ttcttctccttcatt i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1221476 15 - 2312742 ttcttgtacttcatc i proCoq1.NW_012147997v1 I 1 C 0 s otoGar3.GL873528 18329169 15 - 38779656 tacttctctttcatc i otoGar3.GL873528 I 4 I 256 s mm10.chr16 75828871 13 + 98207768 --cctctgcttcatt i mm10.chr16 C 0 C 0 s canFam3.chr31 11444918 15 + 39895921 tttttctaccttatt i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640227 7 - 6883506 --------ttttatt i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16845828 279 + 47401472 I a score=2083842.000000 s hg38.chr21_GL383578v2_alt 39481 176 + 63917 cttctgt-ttca-tcggttgg--------------------------------------ccattg-------------------gtggtat-ttggctggcaaatgagctggttg--gg---------------a-ggtccaggtggctttacccacatatctagcatgt-gtaggtatgactggaaggctgaaaagattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt s panTro5.chr21 876984 176 + 33445071 cttctgt-ttca-tcggttgg--------------------------------------ccattg-------------------gtggtat-ttggctggcaaatgagctggttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaaggctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561635 176 + 46275980 cttctgt-ttca-tcggttgg--------------------------------------ccattg-------------------gtggtat-ttggctggcaaatgagctggttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaaggctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473739 176 - 13858734 cttctgt-ttca-tcggttgg--------------------------------------ccattg-------------------gtggtat-ttggctggcaaatgagctggttg--gg---------------a-ggtccaggtggctttacccacatatctggcacgt-gtaggtatgactggaaggctaaaaagattgaccagatgtcctacttgtga-------------cctttccaacagaccttctcaggataatcagatt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1595928 176 + 32716333 cttctgt-ttct-tcggttgg--------------------------------------ccattg-------------------gtggtat-ttggctggcaaatgagctagttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaaggctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668472 174 - 185818997 cttctgc-ttca-ttggttgg--------------------------------------ccactg-------------------gtggta--ttgg-tggcaaacgagctagttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaagcctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcaggcattctcaggataatcagatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476546 174 - 192294377 cttctgc-ttca-ttggttgg--------------------------------------ccactg-------------------gtggta--ttgg-tggcaaacgagctagttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaagcctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcaggcattctcaggataatcagatt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921337 174 + 9440265 cttctgc-ttca-ttggttgg--------------------------------------ccactg-------------------gtggta--ttgg-tggcaaacgagctagttg--gg---------------a-ggtccaggtggctttacccacatacctggcgtgt-gtaggtatgactggaagcctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcaggcattctcaggataatcagatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660693 175 + 21915920 cttctgc-ttca-ttggttgg--------------------------------------ccactg-------------------gtggtat-ttgg-tggcaaacgagctagttg--gg---------------a-ggtcctctctctctctctcacgtatctggcatgt-gtaggtatgactggaaggctaaaaggattgactctctctctctcttgtga-------------cctttccagcagaccttctcaggataatcagatt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305116 174 - 90373283 cttctgc-ttca-ttggttgg--------------------------------------ccactg-------------------gtggta--ttgg-tggcaaacgagctagttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaaagctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633024 174 + 1337817 cttctgc-ttca-ttggttgg--------------------------------------ccactg-------------------gtggta--ttgg-tggcaaatgagctagttg--gg---------------a-ggtccaggtggctttacccacatatctggcatgt-gtaggtatgactggaaggctaaaaggattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 611944 175 - 3237654 cttctgc-ttca-ctggttgg--------------------------------------ccactg-------------------gtggtat-ttgg-tagcaaatgagctagttg--gg---------------a-ggtccaggtagctttacccacatatctggcatgt-gtaggtatgactaaaaggctaaaaagattgaccagatgtcctacttgtga-------------cctttccagcagaccttctcaggataatcagatt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143706 176 + 50472720 cttttgc-ttca-tctgttgg--------------------------------------tcactg-------------------gtagtat-ttggctggcaaacgagctagttg--gg---------------a-ggtccagatggctttactcacatatctggcatat-gtagatatgactggaaggataaaaagattgaccagaggttctatttgtga-------------cctttccagctggctttctcaggataagcacatt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492264 176 + 13128814 cttctgc-ttca-tcagttgg--------------------------------------tcactg-------------------gtagtat-ttggctggcaaacgagctagttg--gg---------------a-ggtccagatggctttacccacgtatctggcatat-gtagatatgactggaaggctaaaaagattgaccagaggttctatttgtga-------------cctttccagcaggctttctcaggataatcacatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7029837 176 - 14377064 cttctgc-ttca-tcagttgg--------------------------------------tcactg-------------------gtagtat-ttggctagcaaacgaactagttg--gg---------------a-ggtccagatggcgttacccacatatctggcatat-gtagatatgactggaaggctaaaaagattgaccagaggttctatttgtga-------------cccttccagcagactttctcaggataatcacatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077530 175 + 9889416 cttttgc-ttca-tcggttgg--------------------------------------tcactg-------------------gtagtat-ttggctggcaaa-gagctagttg--gg---------------a-ggtccagatggctttacccacatatctggcatat-gtagatatgactggaaggctaaaaagattgaccagaggttctatttgtga-------------cctttccagtaggctttctcaggataatcacatt i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1221491 193 - 2312742 cttctgg-ttca-tcaactgaagt-----------------------------------cacttt-------------------gtggcat-ttagctggtagatgagcttgttg--gg---------------agggtctaaatggcttcacccacttatctggcatgt-gtatgtacgactggaaggctagaaaggttgagcagggctcctacggggggaggaggcctgaatccccttcagcagattctctcaggataagcagatt i proCoq1.NW_012147997v1 C 0 I 27 s otoGar3.GL873528 18329440 214 - 38779656 cttctgc-ctcagtctcctacagtgctaggtttacaggcatgagccaccacacctggcccagttt-------------------gtggtat-gtagctggcagatgagctaattg--ag---------------agggtcttaatggctctgctc-tatgtctggcaggt-gtatgtaggactgg-aggctaaaaaggttgactggagctcccacaggtga-------------cctcttccccaggccctctcaggataatcagatc i otoGar3.GL873528 I 256 C 0 s mm10.chr16 75828884 196 + 98207768 ccccagctttca-caagttgggttat---------------------------------cagctggaagattacacacaacattgtggtaa-tcagctgaaagatgagctagttgaagg---------------a-tggccccatggctcccctcatgtgtgtgatcttg-gt-ggtggaactggatggctagagag-ttgaccctagccccta--taaga-------------cctgttcaccaagctctacccaggtaggcag--- i mm10.chr16 C 0 C 0 s canFam3.chr31 11444933 192 + 39895921 cttctgc-ttta-tcacctgaagt-----------------------------------cacttg-------------------gtgattt-ctagctagtagattacctactaa--ggtaagagagaaggtgaa-gttccaagtggcttcactcacatgtctggcatgtggtaaggatgactgtaagagtagaacagtagaccagagctccttcatgtta-------------tttgttcaataggttttctcagaataac---att i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640234 175 - 6883506 ---gtat-ctca--caactgaagt-----------------------------------cacttg-------------------gtgacatgttggctggt-gatgggctggttc--gtcac------------a-tgt----gtggcttcagtcacatgtgtggcatgtggtagggataactggaaggctgggactgtctatttgagttcttacatgtgg-------------cgtcttcagcagaacatctctggctattcagatt i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16845828 279 + 47401472 I a score=349476.000000 s hg38.chr21_GL383578v2_alt 39657 30 + 63917 tcttatgcagaagctcaagactctgag-aca s panTro5.chr21 877160 30 + 33445071 tcttatgtagaagctcaagactctgag-aca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561811 30 + 46275980 tcttatgtagaagctcaagactctgag-aca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473915 30 - 13858734 tcttatgtagaagctcaagactctgag-aca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596104 30 + 32716333 tcttatgtagaagctcaagactctgag-aca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668646 30 - 185818997 tcttatgtagaagctcaagactctgag-aca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476720 30 - 192294377 tcttatgtagaagctcaagactctgag-aca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921511 30 + 9440265 tcttatgtagaagctcaagactctgag-aca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660868 30 + 21915920 tcttaagtagaagctcaagactctgag-aca i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305290 31 - 90373283 tcttatgtagaagctcaagactctgagaaca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633198 30 + 1337817 tcttatgtagaagctcaagactctgag-aca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612119 30 - 3237654 tcttatgtagaagctcaagactctgag-aca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143882 30 + 50472720 tcttatgtagaggttcaagactctgag-aaa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492440 30 + 13128814 tcttatgtagaggttcaagattctgag-aaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030013 30 - 14377064 tcttatgtagaggttcaagactctgag-aaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077705 30 + 9889416 tcttatgtagaggttcaagactctgag-aaa i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18329654 28 - 38779656 tcttacatggaagctcagagatccaag-a-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829080 20 + 98207768 ---------gagaccctaggct-taaa-acg i mm10.chr16 C 0 I 1 s canFam3.chr31 11445125 27 + 39895921 tctt-tataaaggcttagagctcccag-a-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640409 30 - 6883506 tcttatatggaagctcagggctcccag-agc i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1221684 27 - 2312742 I e micMur3.chr31 16845828 279 + 47401472 I a score=648317.000000 s hg38.chr21_GL383578v2_alt 39687 47 + 63917 gagtgttttaagaaaagagaaataggtgctgccagatttttaggggc s panTro5.chr21 877190 47 + 33445071 gagtgttttaagaaaagagaaataggtgctgccagatttttaggggc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561841 47 + 46275980 gagtgttttaagaaaagagaaataggtgctgccagatttttaggggc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473945 47 - 13858734 gagtgttttaagaaaagagaaataggtgctgccagatttttaggggc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596134 47 + 32716333 gagtgttctaagaagagagaaataggtgctgccagatttttaggggc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668676 47 - 185818997 gagtgttctaagaaaagagaaataggtgctgccagatctttaggggc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476750 47 - 192294377 gagtgttctaagaaaagagaaataggtgctgccagatctttaggggc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921541 47 + 9440265 gagtgttctaagaaaagagaaatcggtgctgccagatctttaggggc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660898 47 + 21915920 gagtgttctaagaaaagagaaataggtgctgccagatctttaggggc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305321 47 - 90373283 gagtgttctaagagaagagaaataggtgctgccagatttttaggggc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633228 47 + 1337817 gagtgttctaagaaaagagaaataggtgctgccagatctttaggggc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612149 47 - 3237654 gagtgttcaaagaaaagagaaataggtgctgccagatttttaggggc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143912 47 + 50472720 gaatgttttaagaaaagagaaatagatgctgccagatctttaggtgc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492470 47 + 13128814 gaatgttttaagaaaagagaaatagatgcttccagatttttaggtgc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030043 47 - 14377064 gaatgttttaagaaaagagaaatagatgctgccagatttttaggtgc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077735 47 + 9889416 gaatgttttaagaaaagagaaatagatgctgccagatttttaggtgc i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1221711 47 - 2312742 gactgttctaagaagaaagaaatagaagctgctagcttcctagtgac i proCoq1.NW_012147997v1 I 27 C 0 s otoGar3.GL873528 18329682 47 - 38779656 gactgttccgagatgaaggaaacagaggctgctggcttcttagggga i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829101 44 + 98207768 --gagttct-agaaaacagaatcatatgtggatagcttcttgggggg i mm10.chr16 I 1 I 2 s canFam3.chr31 11445152 47 + 39895921 gagtgttctaagaaagaggaagtagtagctgatggcgttttaggggc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640439 47 - 6883506 aagtgattcaagagggaggaaatgataactgtcagtgttttaaggac i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16845828 279 + 47401472 I a score=395835.000000 s hg38.chr21_GL383578v2_alt 39734 30 + 63917 caggtccagaaactaacacagagacagttt s panTro5.chr21 877237 30 + 33445071 cgggtccagaaactaacacagagacagttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561888 30 + 46275980 cgggtccagaaactaacacagagacagttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 473992 30 - 13858734 caggtccagagactaacacagagacagttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596181 25 + 32716333 taggtcca-----taacacaaagacacttt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668723 30 - 185818997 tcggttcagaaactaacacagagacgcttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476797 30 - 192294377 tcggttcagaaactaacacagagacgcttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921588 30 + 9440265 tcggttcagaaacgaacacagagacgcttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660945 30 + 21915920 tcggttcagaaactaacacagagacgcttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305368 30 - 90373283 tcggttcagaaactaacacagagacgcctt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633275 30 + 1337817 tcggttcagaaactaacacagagacgcttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612196 30 - 3237654 tcggtccagaaactaacacagagacgcttt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143959 30 + 50472720 taggtccagaaactaacacagagacagttt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492517 30 + 13128814 taggtccagaaactaacacagagacagttt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030090 30 - 14377064 taggtccagaaactaacacagagacagttt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077782 30 + 9889416 taggttcagaaactaacacagagacagttt i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16846107 30 + 47401472 caggtccagaaactaacacagagacagttt i micMur3.chr31 I 279 I 100 s proCoq1.NW_012147997v1 1221758 29 - 2312742 taggtccagaaactaacacagagacactt- i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18329729 28 - 38779656 caggtctggaaactttcagagacatggt-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829147 30 + 98207768 tccttcctgaaattaacccagagacacttg i mm10.chr16 I 2 C 0 s canFam3.chr31 11445199 27 + 39895921 tgagtcca-aaactaacacagatacttt-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640486 30 - 6883506 taggtccacaaactaaaagagctgcatttt i dasNov3.JH568778 C 0 C 0 a score=985144.000000 s hg38.chr21_GL383578v2_alt 39764 84 + 63917 tgtcctgttcaactcatca-----aagccattagagatacaacccagattgag-ggaggaat-tctagattcca-tctctctatgggaaaaa s panTro5.chr21 877267 84 + 33445071 tgtcctgttcaactcatca-----aagccattagagaaacaacccagattgag-ggaggaat-tctagattcca-tctctctatgggaaaaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14561918 84 + 46275980 tgtcctgttcaactcatca-----aagccattagagaaacaacccagattgag-ggaggaat-tctagattcca-tctctctatgggaaaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474022 84 - 13858734 tgtcctgttcaactcatca-----aagccattagagaaacaacccagattgag-ggaggaat-tctagattcca-tctctctatgggaaaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596206 89 + 32716333 tgtcctgttcaactcatcatagccaagccattagagaaacaactcagattcag-ggaggaat-tctagattcca-tctctctatgggagaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668753 84 - 185818997 tgtcctgttcaactcatca-----aagccattaaaaaaacagcccagattcag-ggaggaat-tgtagatttca-tctctctatgggagaaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476827 84 - 192294377 tgtcctgttcaactcatca-----aagccattaaaaaaacagcccagattcag-ggaggaat-tgtagatttca-tctctctatgggagaaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921618 84 + 9440265 cgtcctgttcaactcatca-----aagccattaaaaaaacagcccagattcag-ggaggaat-tgtagatttca-tctctctatgggagaaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5660975 84 + 21915920 tgtcctgttcaactcatca-----aagccattagaaaaacaacccagattcag-ggaggaat-tgtagatttca-tctctctatgggagaaa i cerAty1.NW_012002954v1 C 0 I 14 s chlSab2.chr2 12305398 84 - 90373283 tgtcctgttcaactcatca-----aagccattagaaaaacaacccagattcag-ggaggaat-tgtagattcca-tctctctatgggagaaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633305 84 + 1337817 tgtcctgttcaactcatca-----aagccattaaaaaaacaacccagatccag-ggaggaat-tgtagatttca-tctctctatgggagaaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612226 84 - 3237654 tgtcctgttcaactcatca-----aagccattagaaaaacaacccagattcag-ggaggaat-tgtagattcca-tctctctacgggagaaa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19143989 84 + 50472720 tgtcctgttcagctcatca-----aagccattagagaaccagcccagaattag-ggaggaat-tctggattgcc-tctctctatgggaaaaa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492547 85 + 13128814 tgtcctgttcaactcatca-----aagccattagagaaccagcccagatttgg-ggaggaat-tctggattgccatccctctatgggaaaaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030120 84 - 14377064 tgtcctgttcagctcatca-----aagccattagagaaccaacccagattcag-ggaggaat-tctggattgca-tctctctatgggaaaag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077812 84 + 9889416 tgtcctgttcagctcatca-----aagccattagagaaccaacccagattcag-ggaggaat-tctggattgca-tctctctatgggaaaaa i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1221787 84 - 2312742 tgccatgtttaactggtca-----aagctttttgagaaccaacctagattcag-gaaggagc-aatagatccca-tctctccataggtgaaa i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18329757 31 - 38779656 -gccatgctcaactgctca-----aagcTTTTAGAGA------------------------------------------------------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829177 82 + 98207768 agctatatttgttcagtca-----aggcagtcaggggaacagctc--attcag-gaaggagc-aacagggtact-ccttagcataaaggaag i mm10.chr16 C 0 C 0 s canFam3.chr31 11445226 85 + 39895921 tgccatattcaactggtgt-----aagtcatcacaaaaccaacccagattcag-gaagagttatatagattcca-tgtctccattggggaaa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640516 85 - 6883506 tgccatatcagactggtca-----aagcctttgcagaacccacaaggactcagaggagggat-catagacccga-cctctccctgaaagaaa i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16846137 100 + 47401472 I a score=137111.000000 s hg38.chr21_GL383578v2_alt 39848 12 + 63917 tatcaaaaaatg s panTro5.chr21 877351 12 + 33445071 tatcaaaaaatg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14562002 12 + 46275980 tatcaaaaaatg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474106 12 - 13858734 tatcaaaaaatg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596295 12 + 32716333 tatcaaaaaatg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668837 12 - 185818997 tatcaaaaaatg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476911 12 - 192294377 tatcaaaaaatg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921702 12 + 9440265 tatcaaaaaatg i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12305482 12 - 90373283 tatcaaaaaatg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633389 12 + 1337817 tatcaaaaaatg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612310 12 - 3237654 tatcaaaaaatg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19144073 12 + 50472720 tataaaaaaata i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492632 12 + 13128814 tatttaaaaatg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030204 12 - 14377064 tatttaaaaatg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077896 12 + 9889416 tataaaaaaatg i aotNan1.NW_018487195v1 C 0 C 0 s proCoq1.NW_012147997v1 1221871 12 - 2312742 aataaaaaaatt i proCoq1.NW_012147997v1 C 0 C 0 s mm10.chr16 75829259 12 + 98207768 tatccaagtatt i mm10.chr16 C 0 C 0 s canFam3.chr31 11445311 12 + 39895921 tatcaaagaatt i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640601 12 - 6883506 tatcaaagaatt i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16846137 100 + 47401472 I e otoGar3.GL873528 18329788 0 - 38779656 C e cerAty1.NW_012002954v1 5661059 14 + 21915920 I a score=8621.000000 s hg38.chr21_GL383578v2_alt 39860 2 + 63917 ta s panTro5.chr21 877363 2 + 33445071 ta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14562014 2 + 46275980 ta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474118 2 - 13858734 ta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596307 2 + 32716333 ta i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668849 2 - 185818997 ga i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476923 2 - 192294377 ga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921714 2 + 9440265 ga i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12305494 2 - 90373283 ga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633401 2 + 1337817 ga i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612322 2 - 3237654 ga i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19144085 2 + 50472720 ca i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492644 2 + 13128814 ca i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030216 2 - 14377064 ca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077908 2 + 9889416 ca i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16846237 2 + 47401472 ta i micMur3.chr31 I 100 C 0 s proCoq1.NW_012147997v1 1221883 2 - 2312742 ta i proCoq1.NW_012147997v1 C 0 C 0 s mm10.chr16 75829271 2 + 98207768 ta i mm10.chr16 C 0 C 0 s canFam3.chr31 11445323 2 + 39895921 gg i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640613 2 - 6883506 ca i dasNov3.JH568778 C 0 C 0 e otoGar3.GL873528 18329788 0 - 38779656 C e cerAty1.NW_012002954v1 5661059 14 + 21915920 I a score=2254686.000000 s hg38.chr21_GL383578v2_alt 39862 165 + 63917 tagccatctttaacctgccacaCTATCTACAGCACTTAGAAAGTA---CTAGTTAAGACTCTAAGCTATAA--------TTATTTTATCTTGTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTCTCTTTACCTTT s panTro5.chr21 877365 165 + 33445071 tagccatctttaacctgccacaCTATCTACAGCACTTAGAAAGTA---CTAGGTAAGACTCTAAGCTATAA--------TTATTATATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTCTCTTTACCTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14562016 165 + 46275980 tagccatctttaacctgccacaCTATCTACAGCACTTAGAAAGTA---CTAGGTAAGACTCTAAGCTATAA--------TTATTATATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTCTCTTTACCTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474120 165 - 13858734 tagccatctttaacctgccacaCTATCTACAGCACTTAGAAAGTA---CTAGGTAAGACTCTAGGCTATAA--------TTATTATATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTCTCTTTACCTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596309 167 + 32716333 taaccatgtttaacctgccacaCTATCTACAGCACTTAGAAAGTACTCCTCGTTAAGTCTCTAAGCTATAA--------TTATTATATCTTCTTTTT-ACC-T--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTCTTTTTACCTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152668851 165 - 185818997 tagtcatctttaacctgccacaGTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTAGATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159476925 165 - 192294377 tagtcatctttaacctgccacaGTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTAGATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921716 165 + 9440265 tagtcatctttaacctgccacaGTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTAGATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5661073 162 + 21915920 tagccatctttaacctgccacaGTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTAGA---TCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i cerAty1.NW_012002954v1 I 14 C 0 s chlSab2.chr2 12305496 165 - 90373283 tagccatctttaacctgctgcaCTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTTTATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGACTGA-GTAACAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633403 165 + 1337817 tagtcatctttaacctgccacaGTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTAGATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGATTGA-GTAGCAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612324 165 - 3237654 taaccatcttgaacctgccacaCTACCTACAGCACTTGAAAAGTA---CTAGGTAAGTCTCTAAGCTATGA--------TTATTATATCTTCTTTTT-ACCTT--TCAAAAACTCTGGTTAT--GTTTATTTCAGACTGA-GTAGCAAAATCAGCCTTTAGC-----CTTGATTTCTCTTTACCTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19144087 163 + 50472720 tagccat-tttaacctgcctcaCTATCTACAGCACTTAGAAAGTA---CTAGGTTAGTCCCTAAGCTATAA--------TTATTATATCTTCTTTTT-ACCTT---AAAAAAATCTGGTTAT--GATTATTTCTGATTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTTTCTTTAGCTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492646 162 + 13128814 tagccat-tttaacctgccTTACTATCTACAGCACTTAGAAAGTA---GTAGGTAAGTCCCTAAGCTATAA--------TTATTACATATTCTTTTT-ACCTT----AAAAAATCTAGTTAT--GTTTATTTCTGATTCA-GTAGCAAAATCAAGCTTTAGC-----CTTGATTTTTCTTTACCTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030218 162 - 14377064 tagctat-tttaacttgcctcaCTATCTACAGCACTAAGAAAGTA---GTAGGTAAGTCCCTAAGCTGTAA--------TTATTATATCATCTTTTT-ACCTT----AAAAAATTTGGTTAT--GTTTATTTCTGATTGA-CTAGCAAAATCAACCTTTAGC-----CTTGATTTTTCTTTACCTCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6077910 166 + 9889416 tagccat-tttaacctgcctcaCTATCTACAGCACTTAGAAAGTA---CTAGGTAAGTCCCTAAGCTATAA--------TTATTATATCTTCTTTTT-ACCTTAAAAAAAAAATCTAGTTAT--GTTTATTTCTGACTGA-GTAGCAAAATCAACCTTTAGC-----CTTGATTTTTCTTTACCTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16846239 163 + 47401472 tagccatctttaacctgccataCTATCCACAGCACCTAGAAAGTA---CTAGATAAG--TCTAAGCTATAGACATAGCTATATTATGTCTTTGTTTT-ACCTT--TCAAAAATTCTTGTTGTAAGTTTATTCCAGATTGGCATAGCAAAATCAATCTTTAGC-----TTTGCTT-----------TT i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1221885 163 - 2312742 tagccatctttaacctgccataCTATCCACAGCACCTAGAAAGTA---CTAGAtaaa--tctaagctatagacttatctatattatatctTTGTTTT-ACCTT--TCAAAAATTCTCGTTGTAAGTTTATTACAGATTGGCATAGCAAAATCAATCTTCAGC-----TTTGCTT-----------TT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18329788 165 - 38779656 --ACCAGCTTTAACCTGCCACAGTATCCACAGCACCTAAACAGTA---CTAGGTAAG--TCCAAGCTGTAA--------TTGCTGTATCTTCGTTTTAACCTT--TGAGTAATTCTGGTTAGGAGTTTATTCCAGGTTGGCATAGCAAAATCAATCTTCAGC-----TTTCGTTTTCTTTTTCCCTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829273 158 + 98207768 -tatttttttcaatctaacacaTCTCATATAATACCTTTAAATTA---CTAGATACA--TCTAATTCATAA--------TTATTGCATCTT--TTGT-CCCCT--TTAAGAAATCTAATTAT--AGCT--------TTGATATATCAAAACTAAACTTAAGCTTGATCTTGATTTTACTTAACTTTT i mm10.chr16 C 0 I 201 s canFam3.chr31 11445325 152 + 39895921 tagccat-------------cACTATCCATAACATCTAGAAAGTA---CTAGATCAATATCTAAGCTATAA--------TTTTTATATCCT-GCTGT-ATCTT--TCAAAAATTCTGGTTTTGTGTTTATTTCAGATTGTCATAACAAAATCAAACATTAAC-----TTTGATT--TCTTTACCTTT i canFam3.chr31 C 0 I 15 s dasNov3.JH568778 640615 163 - 6883506 tagccat-tttaacctgccCTACTCTCCATAGCACCTAGAAATTA---CTGGATAAG--CCCAAACCATAA--------TTATTATATCCTTGTTTT-AGTTT--T-AAAATTTCTGGTTAT-CATTTTAGTTAGATTGTCATAGCAAAATCAAACTTTAGC-----CATGCTTTTTCTTTACCTTT i dasNov3.JH568778 C 0 C 0 a score=899251.000000 s hg38.chr21_GL383578v2_alt 40027 59 + 63917 TCCGTCCCTAATTTTT-AAAATAGCCCTCATCAGTAGGTGCCAGTTGGAGATTTAAAAAC s panTro5.chr21 877530 59 + 33445071 TCCGTCCCTAATTTTT-AAAATAGCCCTCATCAGTAGGTGCCAGTTGGAGATTTAAAAAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14562181 59 + 46275980 TCCGTCCCTAATTTTT-AAAATAGCCCTCATCAGTAGGTGCCAGTTGGAGATTTAAAAAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474285 59 - 13858734 TCCATCCCTAATTTTT-AAAATAGCCCTCATCAGTAGGTGCCAGTTGGAGATTTAAAAAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596476 59 + 32716333 TCCATTCCTAATTTTT-AAAATAGCCCTCATCAATAGGTGCCAGTTGGAGATTTAAAAAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669016 59 - 185818997 TCCACGCCTAATTTTT-TAAATAGCCCTCATCAGTAGGTTCCCTTTGGAGATTTAAAAAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159477090 59 - 192294377 TCCACGCCTAATTTTT-TAAATAGCCCTCATCAGTAGGTTCCCTTTGGAGATTTAAAAAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921881 59 + 9440265 TCCACGCCTAATTTTT-TAAATAGCCCTCATCAGTAGGTTCCCTTTGGAGATTTAAAAAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5661235 59 + 21915920 TCCACACCTAATTTTT-TAAATAGCCCTCATCAGTAGGTTCCCTTTGGAGATTTAAAAAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305661 59 - 90373283 TCCATGCCTAATTTTT-AAAATAGCCCTCATCAGTAGGTGCCCGTTGGAGATTTAAAAAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633568 59 + 1337817 TCCACACCTAATTTTT-TAAATAGCCCTCATCAGTAGGTTCCCTTTGGAGATTTAAAAAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612489 59 - 3237654 TCCATGCCTAATTTTT-AAAATAGCCCTCATCAGTAGGTGCCCACTGGAGATTTAAAAAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19144250 60 + 50472720 TCCATCCCTAATTTTTTAAAATAGCCCTCATCCCTAGGTGCCAGTTGGAGATTTAAAAAC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492808 60 + 13128814 TCCATCCCTAATTTTTTAAAATAGCCCTCATCCCTAGGTGCCAGTTGGAGATTTAAAAAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030380 60 - 14377064 TCCATCCCTAATTTTTTAAAATAGCCCCCATACCTAGGTGCCAGTTGGAGATTTAAAAAC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6078076 60 + 9889416 TCCATCCCTAATTTTTAAAAATAGCCCTCATCCCTAGGTGCCAGTTGGAGATTTAAAAAC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16846402 59 + 47401472 TCTTTACCTAACTTTT-AAAATAGCCCTCATCAGTAGGTGGCAGTTGGAGATTTAAAAAC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1222048 59 - 2312742 TCTTTACCTAACTTTT-AAAATAACCTTCATCAGTAGGTGGCAGTTGGAGATTTAAAAAC i proCoq1.NW_012147997v1 C 0 I 4 s otoGar3.GL873528 18329953 59 - 38779656 TCTTTACTTGACTTCC-AAAATAGCCCTCATCAGTAGGTGGCAGTTGGAGATTTAAAAAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829632 58 + 98207768 ccTTTACCCAACCTTC-TAAATAGCTCTCATCAATAGGTATCAGTT-GAGATTTAAAGAC i mm10.chr16 I 201 C 0 s canFam3.chr31 11445492 59 + 39895921 CCTTTTCATACTTCCT-AAAATAGCCCTCATCAATAGGTGGCAGTTGGAGATTTAAAAAC i canFam3.chr31 I 15 C 0 s dasNov3.JH568778 640778 43 - 6883506 -----------------TAAATGCTCCTCATCAGTAGGTTGCAGTTAGAGATTTATAAAT i dasNov3.JH568778 C 0 C 0 a score=72611.000000 s hg38.chr21_GL383578v2_alt 40086 8 + 63917 AGGCATGC s panTro5.chr21 877589 8 + 33445071 AGGCATGC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14562240 8 + 46275980 AGGCATGC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474344 8 - 13858734 AGGCATGC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596535 8 + 32716333 AGGCACGC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669075 8 - 185818997 AGGCACAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159477149 8 - 192294377 AGGCACAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921940 8 + 9440265 AGGCACAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5661294 8 + 21915920 AGGCACAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12305720 8 - 90373283 AGGCACAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633627 8 + 1337817 AGGCACAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612548 8 - 3237654 AGGCATAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19144310 8 + 50472720 AGCCACGC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492868 8 + 13128814 AGCCACGC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030440 8 - 14377064 AGCCACAC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6078136 8 + 9889416 AGCGACTC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16846461 4 + 47401472 ----CTAC i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18330012 8 - 38779656 AGGCACAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829690 8 + 98207768 ACACACAC i mm10.chr16 C 0 C 0 s canFam3.chr31 11445551 8 + 39895921 TGGCATAC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640821 3 - 6883506 -GGC---- i dasNov3.JH568778 C 0 C 0 e proCoq1.NW_012147997v1 1222107 4 - 2312742 I a score=12755901.000000 s hg38.chr21_GL383578v2_alt 40094 796 + 63917 CCTATACAAGCCAGTGAGTATTAATTGTGAGTGT----TTCCCTCTCATGGTAGCAA-CAG-TTTTTATTTATGTCATA---AGTCACACATATCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGT---GATATC----TGAGTACATTAAAATTCA-TAGTGAACAATAAAATGTTT-CTTGACCCATATACGACTTGACTGAACCCCAGTTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAAAACAGCAGAAACACAAAGCCACATAAAAAGTTGAACGAGTTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACCTTAATCTAAACAGACATTTCCTGTAACCGCTTATGCCCCATAAGGAATCTGCAGC-TAATAGGGCCTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTGAATGAGTATGTATTTGCTTT-GACCATCTGCTCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT------TC--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGACGTATGTAAGAAGGAGAAAGCAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGTAGCACTATTGACCATGAAAGTGTAGCATAATAG s panTro5.chr21 877597 795 + 33445071 CCTATACAAGCCAGTGAGTATTAATTGTGAGTGT----TTCCCTCTCATGGTAGCAA-CAG-TTTTTATTTATGTCAGA---AGTCACACATATCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGT---GATATC----TGAGTACATTAAAATTCA-TAGTGAACAATAAAATGTTT-CTTGACCCATATACAACTTGACTGAACCCCAGTTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAAAACAGCAGAAACACAAAGCCACATAAAAAGTTGAACGAGTTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACCTTAATCTAAACAGACATTTCCTGTAACCGCTTATGCCCCATAAGGAATCTGCAGC-TAATAGGGCCTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTGAATGAGTATTTATTTGCTTT-GACCATCTGCGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCCATTTCCCTGAATCTGTTACAGCTTCTGAGACGTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14562248 795 + 46275980 CCTATACAAGCCAGTGAGTATTAATTGTGAGTGT----TTCCCTCTCATGGTAGCAA-CAG-TTTTTATTTATGTCAGA---AGTCACACATATCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGT---GATATC----TGAGTACATTAAAATTCA-TAGTGAACAATAAAATGTTT-CTTGACCCATATACAACTTGACTGAACCCCAGTTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAAAACAGCAGAAACACAAAGCCACATAAAAAGTTGAACGAGTTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACCTTAATCTAAACAGACATTTCCTGTAACCGCTTATGCCCCATAAGGAATCTGCAGC-TAATAGGGCCTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTGAATGAGTATTTATTTGCTTT-GACCATCTGCGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATGTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 474352 795 - 13858734 CCTATACAAGCCAGTGAGTATTAATTGTGAGAGT----TTCCCTCTCATGGTAGCAA-CAG-TTTTTATTTATGTCATA---AGTCACACATATCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGT---GATATC----TGAGTACATTAAAATTCA-TAGGGAACAATAAAATGTTT-CTTGACCCATATACAACTTGACTGAACCCCAGTTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAAAACAGCAGAAACACAAAGCCACATAAAAAGTTGAACGAGTTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACCTTAATCTAAACAGACATTTCCTGTAACCGCTTATGCCCCATAAGGAATCTGCAGC-TAATAAGGCCTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTGAATGAGTATTTATTTGCTTT-GACCATCTGCGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATGTACGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAGTAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1596543 795 + 32716333 CCTATACAAGCCAGTGAGTATTTATTGTGAGAGT----TTCCCTCTCATCGTAGCAA-CAG-TTTTTATTTATGTCATG---AGTCACACATACCTTGGTTTCAGTATATTCATTCG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GACAACAAGG----------------------GAAGAA-----GACTTAGCAGT----AAGGT---GATATC----TGAGTATGTTAAAATTCA-TAGTGAACAATAAAATGTTT-CTTGACTCATATACGACTTGACTGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAAAAGAGCAGAAACACAAAGCCACATAAAAAGTTGAACAAGTTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACCTTAATCTAAACAGACATTTCCTGTAACCGCTTATGCCTCATAAGGAATCTGCAGC-TAATAGGGTCTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTGAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTAATACTGACCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTGTTTCCCTGAATCTGTTACAGCTTTTGAGATGTATGTAAGAAGGAGAAAACCGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669083 798 - 185818997 CCTTTACAAGTCAGTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAG-TTTTTATTTGTGTCATA---AGTCACACATACCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGTGATGATATC----TGAGTACATTAAAATTCA-TCGTGAACAATAAACTGTTT-CTTGACCCATATACTACTTGACCGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAGAAGAGCAGAAACATAAAGCCACATAAAAAGTTGAATAAGTTCACA-TTTTTAAATTTCTTGTGAAAGACTGATGATTGTGTGACATTGTTCTAAACAGACGTTTCCTGTAACTGCTTATGCCCCGTAAGGAATCTGTAGC-TAAGAGGGCCTCTG-----------------------CATTCTTCTCTATTGGCTTCGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTGGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----GGACTAGGTCATCTATTTCCCTGAACCTGTTACAGCTTTTGAGATCTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACAAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159477157 798 - 192294377 CCTTTACAAGTCAGTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAG-TTTTTATTTGTGTCATA---AGTCACACATACCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGTGATGATATC----TGAGTACATTAAAATTCA-TCGTGAACAATAAACTGTTT-CTTGACCCATATACTACTTGACCGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAGAAGAGCAGAAACATAAAGCCACATAAAAAGTTGAATAAGTTCACA-TTTTTAAATTTCTTGTGAAAGACTGATGATTGTGTGACATTGTTCTAAACAGACGTTTCCTGTAACTGCTTATGCCCCGTAAGGAATCTGTAGC-TAAGAGGGCCTCTG-----------------------CATTCTTCTCTATTGGCTTCGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTGGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----GGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATCTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACAAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5921948 798 + 9440265 CCTTTGCAAGTCAGTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAG-TTTTTATTTGTGTCATA---AGTCACACATACCTTGGTTTCAGTATATTCATTGG-TAGCCCATAAGCCCACTAATATTACCACACAGCTGTATGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGTGATGATATC----TGAGTACATTAAAATTCA-TCGTGAACAATAAACTGTTT-CTTGACCCATATACTACTTGACCGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAGAAGAGCAGAAACATAAAGCCACATAAAAAGTTGAATAAGTTCACA-TTTTTAAATTTCTTGTGAAAGACTGATGATTGTGTGACATTGTTCTAAACAGACGTTTCCTGTAACTGCTTATGCCCCGTAAGGAATCTGTAGC-TAAGAGGGCCTCTG-----------------------CATTCTTCTCTATTGCCTTCGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----GGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATCTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACAAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5661302 794 + 21915920 CCTCTCTCTCTCTCTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAG-TTTTTATTTGTGTCATA---AGTCACACATACCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTCCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCCTC----TCTCTCTCTCTATC----TGAGTACATTAAAATTCA-TCGTGAAC---AAAATGTTT-CTTGACCCATATACTACTTGACTGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----TC-TCTCTCTCTCTAGAAACATAAAGCCACATAAAAAGTTGAGTAAGTTCACATTTTTTAAATTTCTTGTGAAAGACTGAGGATTGTGTGACATTGTTCTAAACAGAAGTTTCCTGTAACTGCTTATG--CCGTAAGGAATCTGTAGC-TAAGAGGGCCTCTG-----------------------CATTCTTCTCTATTGGCTtcgctctctctctctctctTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTGTTTTTGGTTTGTGAAGCTCAACTCTCTCTCTCTCTCTAGTCCCTAGAG-AAGTGAG--CATTT--G----GGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATCTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACAAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGCAGCATAATAG i cerAty1.NW_012002954v1 C 0 I 14 s chlSab2.chr2 12305728 798 - 90373283 CCTTTACAAGTCAGTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAG-TTTTTATTTATGTCATA---AGTCACACATATCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGTGATGATATC----TGAGTACATTAAAATTCA-TAGTGAACAATAAAATGTTT-CTTGACCCATGTACTTCTTGACCGAACCCCAGGTTG-TTACTTTTTT--CTTCCCAATATCAACAAAATCTTCC----AA-ATTAGAAGAGCAGAAACATAAAGCCACATAAAAAGTTGAATAAGTTCACATTTTTAAAATTTCTTGTGAAAGACTGATGATTGTGTGACATTGTTCTAAACAGACGTTTCCTGTAACTGCTTATGCCCCGTAAAGAATCTGTAGC-TAAGAGGGCCTCTG-----------------------CATTCTTCTCTATTGGCTTTGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT-------GGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATCTATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTATTTGAGACGTGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 633635 794 + 1337817 CCTTTACAAGTCAGTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAG-TTTTTATTTGTGTCATA---AGTCACACATACCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTCCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGTGATGATATC----TGAGTACATTAAAATTCA-TCGTGAAC---AAAATGTTT-CTTGACCCATATACTACTTGACTGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAGAAGAGCAGAAACATAAAGCCACATAAAAAGTTGAGTAAGTTCACATTTTTTAAATTTCTTGTGAAAGACTGAGGATTGTGTGACATTGTTCTAAACAGAAGTTTCCTGTAACTGCTTCTG--CCGTAAGGAATCTGTAGC-TAAGAGGGCCTCTG-----------------------CATTCTTCTCTATTGGCTTCGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTGTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----GGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATCTATGTAAGAAGGAGAAAACAGATAAGCCAAATCGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 612556 800 - 3237654 CCTTTACAAGTCAGTGAGTATTAACTGTGAGAAT----TTCCCGCTCATGGTAGCAA-CAA-TTTTTATTTATGTCATACATAATTACACATACCTTGGTTTCAGTATATTCATTGG-TAGCCCATAATCCCACTAATATTACCACACAGCTGTGTGTGTTTCTTCTTCA-GAGAACAAGG----------------------GAACAA-----GACTTAGCAGC----AAGGTGATGATATC----TGAGTACATTAAAATTCA-TAGTGAACAATAAAATGTTT-CTTGATCCATATACTACTTGACTGAACCCCAGGTTG-TTACTTTTTT--CTCCCCAATATCAACAAAATCTTCC----AA-ATTAAAAGAGCAGAAACATAAAGGCACATAAAAAGTTGAACAAGTTCACA-TTTTTAAATTTCTTGTGAAAGACTGATGATTGTGTGACATTGTTCTAAACAGACGTTTCCTGTAACTGCTTATGCCCCATAAGGAATCTGTAGC-TAATA-GGCCTCTG-----------------------CATTCTTCCCTGTTGGCTTCGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATTCCTCAT-----------TTTTTATTTAA-TTATTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----GGACTAGGTCATCTATTTCCCCGAATCTGTTACAGCTTTTGAGATATATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAGCATAATAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19144318 796 + 50472720 CCTTCACAAGCCAGTGAGTATTAATTGTCAGAAT----TTCCCTCTCATGATAGCAA-CAG-TTTTTATTTATGTCATA---AGTCACACATACCTTGGTTTCGGTTTATTCATTGG-TACCCCATAATCCCACTAACATTACCACACAGTTGTGTGTGTTTCTTCTTCG-GAGAACAAGG----------------------GAACAA----GGATTTAGCAGA----AAGAT---GACATC----TGAGTACATTAAAATTCA-TAGTAAATAATAAAATGTTC-CTTGACTCATATACTACTTGACTGAACCCCAGGTT--TTACTTTTTT-TCTCCCCAATATCAACAAAATCTTCC----AA-ATTCAAAGAGCAGAAACACAAAGCCACATAAAAAGTTGAACAAGTTCACA-TTTTAAAATTTCTCGTAAAAGACTGATGATTGTGTGACATTAATCTCAACAGACATTTCCTGTAACTGCTTATACCCCATAAGGAATCAGCAGC-TAATAGGGCTTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTAATAGTGTCCT-GAGGTACACAAATGTTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTTAGA----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATATATGTAAGAAAGAGAAAACAGATAAGCCAAATTGG--TTTGAGACGTGGGGCACCTCCAAATGGAGCACTATTGACCATGAAAGTGTAGCATCACAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2492876 797 + 13128814 CCTTCATAAGCCAGTGAGTATTAATTGGGAGAAT----TTCCCTCTCATGATAGCAA-CAG-TTTTTATTTATGTCATA---AGTCACACATACCTTGGTTTCAGTTTATTCTTTGG-TATCCCATAATCCCACTAACATTACCACACAGTTGTGTGTGTTTCCTCTTCA-GAGAACAAGG----------------------GAACAA----GGACTTAGCAGA----AAGGT---GACATC----TGAGTACATTAAAATTCG-TAGTAAATAATAAAATGTTC-CTTGACTCATACACTACTTGACTGAACCCCAGGTTG-TTACTTTTTT-CCTCCCCAATATCAACAAAATCTTCC----AA-ATTCAAAGAGCAGAAACGCAAAGCCACATAAAAAGTTGAACAAGTTCACA-TTTTAAAATTTCTCGTAAAAGACTGATGATTGTGTGACATTAATCTCAACAGACATTTCCTGTAACTGCTTATACCCTATAAGGAATCAGCAGC-TAATAGGGCTTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTGATACTGTCCT-GAGGTACACAAATGTTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATATATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGTGGGGCACCTCCAAATGGAGCACTATTGACCATGAAAGTGTAGCATCACAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7030448 798 - 14377064 CCTTCACAAGCCAGTGAGTATTAATTGTGAGAAT----TTCCCTCTCATGATAGCAA-CAG-CTTTTATTTATGTCATA---AGTCACACATACCTTGGTTTCAGTTTATTCGTTGG-TACCCCATAATCCCACTAACATTACCACACAGTTGTGTGTGTTTCTTCTTCG-GAGAACAAGG----------------------GAACAA----GGACTTAGCAGA----AAGGT---GACATC----TCAGTACATTAAAATTCG-TAGTAAATAATAAAATGTTC-CTTGACTCATATACTACTTGACTGAACCCCAGGTTG-TTACTTTTTT-TCTCCCCAATATCAACAAAATCTTCC----AA-ATTCAAAGAGCAGAAACACAAAGCCACATAAAAAGTTGAACAACTTCACA-TTTTAAAATTTCTCGTAAAAGACTGATGATTGTGTGACATTAATCTCAACAGACATTTCCTGTAACTGCTTATACCCCATAAGGCATCAGCAGC-TAATAGGGCTTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAATTTTTTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGTTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATATATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGTAGGGTACCTCCAAATGGAGCACTATTGACCATGAAAGTGTAGCATCACAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6078144 791 + 9889416 CCTTCACATGCCAGTGAGT----ATTGTGAGAAT----TTCCCTCTCATGATAGCAA-TAG-TTTTTATT--TGTCATA---AGTCACATATACCTTGATTTCACTTTATTCATTGG-TACCCCATAATCCCACTAACATTACCACACAGTTGTGTGTGTTTCTTCTTCG-GAGAACAAGG----------------------GAACAA----GGACTTAGCAGA----AAGGT---GACATC----TGAGTACATTAAAATTCA-TAGTAAATAATAAAATATTC-CTTGACTCATATACTACTTGACTGAACCCCAGGTTG-TTACTTTTTT-TCTCCCCAATATCAACAAAATTTTCC----AA-ATTCAAAGAGCAGAAACACAAAGCCACATAAAAAGTTGAACAAGTTCACA-TTTTAAAATTTCTCGTAAAAGACTGATGATTGTGTGACATTAATCTCAACAGACATTTCCTGTAACTGCTTATACCCCATAAGGAATCAGCAGC-TAATAGGGCTTCTG-----------------------CATTCTTATCTATTGGCTTGGCTGTCTAAATGAGTATTTATTTGCTTT-GACCAACTGTGCCTATCCCTCAT-----------TTTTTATTTAA-TTTTTTT-------C--AGATTTAATACTGTCCT-GAGGTACACAAATGTTCTTTTTGGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAAGTCCCTAGAG-AAGTGAG--CATTT--G----TGACTAGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATATATGTAAGAAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGTGGGGCACCTCCAAATGGAGCACTATTGACCATGAAAGTGTAGCATCACAG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16846465 785 + 47401472 -CCTACCAAGCCATTGAGTATTAATTGTGGGAAT----TTTCCTCTCACAATACCAA-CCGTTTTTTATTTATGCCACA---AGTCATACAGAACTTGGTTTCACTTTATTCATTGG-TAACCCATAATCCCACTAATATCACCACATGAT--TGTGTGTTTCCTCTTCG-CAGACCA-----------------------------AA-----GACTTAGCAAA----AAGAT---GC--------TGAGTATATTAAAATTCA-CAGTAAACAAGAAAATTTTC-CTTGACGTATATACTCCTTGACTGAACCCCAGATTA-TTATATCTTTCTCTCCCCAGTATCAACAAAATCTTTTTTAAAA-A----AGGAGCAGAAACACAAAGCCACACAAAAAGTTAGACAAGTTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACATTAATCTAAACAGACATTTCCTGTAACTACTTATGCCCCATAAGGAATCAGCAGCTTAATGGTGGCTCTG-----------------------GGTTCTTATCTATTGGTTTGGCTGTCTAAATGAGTATTTATTTGCTTT-GGCCAACTCTGCCTATGCCTCAT-----------TTTTTATTTAA-TTTTTTC-------T--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCCTTTTCGTTGGTGAATCTCAAGGTCAATTTAAAGGCAACTCCCTGGAG-AAGTGAG--CATTT--G----TGACTGGGTCATCTATTTCCCTGAATCTGTAACAGCTTTTGAGATATATGTAAGGAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCATGAAAGTGTAACATAACAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1222111 781 - 2312742 -CCAACCAAGCCATTGAGTATTAATTGTGGGAAC----TTCCCTCTCACGATAGCAA-CCG-TTTTTGTTTATGCCACA---AATCATACAGAACTTGGTTTCAGTTTATTCATTGG-TAACCCATAATCCCACTAATATCACCACACGGTTGTGTGTGTTTCCTCTCCG-CAGACCA-----------------------------AA-----GACTTAGCAAA----AAGGT---GC--------TGAGTACATTAAAATTCT-TAGTAAACAAGAAAATTTTC-CTTGACGTATATACTACTTGACTGAACCCCATATTA-TTACATCTTTCTCTCCCCAGTACCAACAAAATCTTTC----AA-A----AAGAGCAGAAACACAAAGCCACACAAAAAATTGGACAAATTCACA-TTTTAAAATTTCTTGTAAAAGACTGATGATTGTGTGACATTAATCTAAACTGACATTTCCTGTAACTACTTATGCCCCATAAGGAATCAGCAGCTTAATGGGGGCTCTG-----------------------TGTTCTTATCTATTGGTTTGGCTGTCTAAATGAATATTTATTTGCTTT-GGCCAACTCTGCCTGTG-CTCAT-----------TTTTTATTTAA-TTTTTTC-------T--AGATTTAATACTGTCCT-GAGGTACACAAATGCTCCTTTTCGTTTGTGAAACTCAAGGTCAATTTAAAGGCAACTCCCTGGAG-AAGTGAG--CATTT--G----TGACTGGGTCATCTATTTCCCTGAATCTGTAACAGCTTTTGAGATATATGTAAGGAGGAGAAAACAGATAAGCCAAATTGGTTTTTGAGACGAGGGGCACCTACAAATGGAGCACTATTGACCACGAAAGTGTAGCATAACAG i proCoq1.NW_012147997v1 I 4 C 0 s otoGar3.GL873528 18330020 782 - 38779656 -CCTACCAAGCC-------ATTAATTGTGGGAAT----TTCCCTCTCGTGATAGCAA-CGG-TTTTTATTTATGCCACA---AGTCATACAGAACTTGGTTTCAGTTGATTCATTGG-TAGCCTGTGATCCCACTAATATCACTGTACAGTTGTGTGTGTTTCCTCTCTG-CAGACCA-----------------------------GA-----GACTTAGCAAA----AAGGT---GATATCCAAGTGAATACTTTAACATTCA-TAGTAAACAATCAAATTTTC-CTTGACGCATGTACTACTAGACTAAACCCCAGGATG-TTACTTCTTCCTCTCCCCAGTATCAACAAAATCTTTC----AA-A----AAAAGCAGAAATGCAAAGCCACATAAGAATTTGGGCAAGTTCACA-TTTTAAAATTTCTTGT-AAAGACTGATGATTGTGTGACATTAATCTAAACAGACATTTCCTGTAACCACTTATACCCCATAAGGAATCAGCAGCTTAATGGGGGCTCTG-----------------------CCTGCTTATCTGTTGGTTTGGCTGTCTAAATGAGTATTTATTTGCTTT-GGCCAACTCTGCCTAGGTCTCAT-----------TTTTTATTTAA-TTTTTTC-------T--AGATTTAATACTGTCCT-GAGGTACACAAATGCTTCTTCTCGTTTGTGAAGCTCAAGGTCAATTTAAAGGCAGCTCCTTGGCG-AAGTGAG--CATTG--G----TGACTGGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATATGTGTGAGGGGGAGAAAACAGATAAGCCCAATTGGTTTTTGAGATGAGGGGCACCTACAAATGGAGCACTATTGACCATGGAAGTGTAGCATAACAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75829698 852 + 98207768 TCTGCTAAAGCCATTACATATTAATTATGAACAT----TTCCATTCCTTGAGAGCAACCAG-GTTTTATTTATGTCACA---AGTTCTACAAAACTGATTTTCAGTTTCTTCACTGG-TAGCTCATAACCTAATTATTATTATGACACAGTTGTGGGTGCCTTGTCATCATGAGAAGGATGGATGAGAAAGAATGATGGATAAGAAGAA-----GGATGGAAAAA----ATGGC---CACGCG----TGAGCCCATTACAA-TCA-AGGTTAGGAA-GACATTTTC-CCTGAAT--TACATTTCTTGACTTAAATAGATATCGTTTGCTTCTTTTTCTCCCCAGTACTAGCAAA--CGTCT----AA-TTTAAAAGAGC---AAGGCAAAGGCATATAAAGTGCTGTGCAAGGTTACA-TTTTAAAATGTCTTGTAAAAGACTAATATTGGTGTGATATTAATTTAGGAAGACATTTCCTGTAACCACTTATGGATCATAAGGAGTCAATGGCTTAATGGGGATCTTGTGCTTATCTATTGGTTTGGCTATCTTTTTCATCTATTGGTTTGGTTGTCTAACTGAGTAATTGTTGACTTTAAAAAAACTCTGCCTATTCTttattattattattattattattaCA-TTTTTCT-------CTGAGATTTTGAAGTGCCCCAGTGGTACACAAATCATTGTTTTGGTTTCTGAAGGTCAAGGCTCATTTAAAGGTGAGTTCCTGAAA-AACCTAGCCCCTTT--GTGACTGACTGGGTCATCTAGTATCTTGCATCCAT------TTCTGAGGTGTATATAAGGAAAGGCAAACTAATGAGCCAGATTGTGTTTTGAGACAAGGGACACCTACAAATGGAGAAATATTTTCCATGGTAACGCGGTGTCATGG i mm10.chr16 C 0 C 0 s canFam3.chr31 11445559 819 + 39895921 CCTACATAGGCCATTGAGGATTAACTGGGGGAATTTCCTTCCCTCCCACAATAGTGA-TGG-TTTTCATTTATGTCACA---AGTTATACAGAACTTGGTTTCAGTTTATTCATCGATTAGCCCATAATCCTGCTAATAGCACCACACAGTTCTGTGCATTTTCACCACA-CAGTTCTGTT----------------------TCCCCACCTTGGCCTGTGCAGAGGCTAAGGA---GTTAGA----AAAGTATGTCAAAATTCATTAGTAAAGAATCAAATTTTC-CTTGACACATATATTACTTGACTGAACCCCAGGCTC-TTCTTTCTTC----TCCCAACACCAA-AAAATCTTCC----AT-ATTAAAAGGATGGAAATAAAAAGCCATATAAAATGTTGGACAAGTTCACA-TTTAAAAATTTCTTGTAAAAGACCAAAGACTGTGTGGCATTAATCTAAACAGACATTTCCTGTAACCACTTACACCCCCTAACGAGTCAGCAATTTAATGAGGGCTCTG-----------------------CATTCTTATCTATTGGTTTGGCTGTTCTACTGAGTATTTATTTGCTTT-GGCCAACTCTGTCTACCCTGCCT--------TCATTTTCACTTAA-TTCCCCCCCCCCCCC--AGATTTAATACTGTCCT-GAGGTACACAGATGCTCTTTTTGGTTTGTGGAGCTCAAGGTCAATTTAAAGGCAGGTCCCTGGAGAAAGTGAG--CATTT--G----TGACTGGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTGAGATATATGTAAGGACGAGAAAACAGATAAGCTAAATTGGTTTTTGAAACGAGGGACACCTACAAATGGAGCACTACTGACCATGAAAATGTAGCATAACAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 640824 760 - 6883506 CCTACACAGGCCATTGAGCATTAATTGTGGGCAT----TTCC--CTCACGATAACAA-CAG-TTTCTCTTTATACCACA---AGTCACATAGAACTTGGTTTCAGTTTATTCATTGG-TAGC--ATAATCCCACTAATATCAACACACAG-TGTGTATGTTTCCTCGCCA-GAGAGGAAAG----------------------ACAGAA-------------AAA----AAGGT---GATATC----TGAGTGCATTAAAAAGCATTAGTAAACAATAAAGTATTTCCTTGACGTATACACCAGTTGACTGAAGCCCAGGCTG-TTACT-------------------AACAAAATCTTCC----AACATTAAAAGAGCAGAAACAAAAAGCCACTTAAAA-GTAGCACAAGCACCCA-TTTTAAAATTTCTTGTAAAAGTCTGATGATTGTGTGGCATTAATCTAAACAGACATTTCCTGTAACTACTTGTGTACCATAACGGATCAGTATCATAATGGGG-TTCTG-----------------------CATTCTTATCTATTGGTTTGGCTGTCTAAAT------------GCCTT-TGCCAAGTCTGCCTATCTCTCCT--------CCCTTTTTATTAAT-TTTTTTT-----TTC--AGATGTAATACTGTCCT-GAGCTACACAAATGCTCTTTTTGGTTTGTGAAGCTCAAGGTCATTTTAAAGGCAAGTCCCTGGAG-AAGTGAG--CATTT--G----TGACTGGGTCATCTATTTCCCTGAATCTGTTACAGCTTTTAAGATATATGTAAGGAGGGGAGAACAGATAAGCCAAATCTGTTTTTGAGAAGAGGGGCACTTACAAATAGAGCTCTACTGACCACGAAAATGTAGCATAATGA i dasNov3.JH568778 C 0 C 0 a score=203909.000000 s hg38.chr21_GL383578v2_alt 40890 14 + 63917 TATTTATTT-----GGAAA- s panTro5.chr21 878392 14 + 33445071 TATTTATTT-----GGAAA- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14563043 14 + 46275980 TATTTACTT-----GGAAA- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 475147 14 - 13858734 TATTTATTT-----GGAAA- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1597338 14 + 32716333 TATTTATTT-----GGAAA- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669881 14 - 185818997 TATTTATTT-----GGAAA- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159477955 14 - 192294377 TATTTATTT-----GGAAA- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5922746 14 + 9440265 TATTTATTT-----GGAAA- i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12306526 14 - 90373283 TATTTATTT-----GGAAA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 634429 14 + 1337817 TATTTATTT-----GGAAA- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 613356 14 - 3237654 TATTTATTT-----GGAAA- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19145114 14 + 50472720 TATTTATTT-----GGGGA- i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2493673 14 + 13128814 TGTTTATTT-----GGGGA- i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7031246 14 - 14377064 TATTTATTT-----GGGGA- i cebCap1.NW_016107322v1 C 0 I 1 s aotNan1.NW_018487195v1 6078935 13 + 9889416 TATTTATTT------GGGA- i aotNan1.NW_018487195v1 C 0 I 1 s micMur3.chr31 16847250 14 + 47401472 TATTTATTT-----GGGGA- i micMur3.chr31 C 0 I 1 s proCoq1.NW_012147997v1 1222892 14 - 2312742 TATTTATTT-----GGGGA- i proCoq1.NW_012147997v1 C 0 I 1 s otoGar3.GL873528 18330802 14 - 38779656 TATTTATTT-----GGGGA- i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75830550 19 + 98207768 TGTTTATTTCAGAGGGAAA- i mm10.chr16 C 0 C 0 s canFam3.chr31 11446378 14 + 39895921 TATTTATTT-----GGAGA- i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 641584 15 - 6883506 TATTTATTT-----GGGTGA i dasNov3.JH568778 C 0 C 0 e cerAty1.NW_012002954v1 5662096 14 + 21915920 I a score=536241.000000 s hg38.chr21_GL383578v2_alt 40904 28 + 63917 AAGATCCATTTGATCATTTTATCCTCTG s panTro5.chr21 878406 28 + 33445071 AAGATCCATTTGATCATTTTATCCTCTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14563057 28 + 46275980 AAGATCCATTTGATCATTTTATCCTCTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 475161 28 - 13858734 AAGATCCATTTGATCATTTTATCCTCTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1597352 28 + 32716333 AAGATCCATTTGATCATTTTATCCTCTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669895 28 - 185818997 AAGATCCATTTGATCATTTTATCCTCTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159477969 28 - 192294377 AAGATCCATTTGATCATTTTATCCTCTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5922760 28 + 9440265 AAGATCCATTTGATCATTTTATCCTCTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5662110 28 + 21915920 AAGATCCATTTGATCATTTTATCCTCTG i cerAty1.NW_012002954v1 I 14 C 0 s chlSab2.chr2 12306540 28 - 90373283 AAGATCCATGTGATCATTTTATCCTCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 634443 28 + 1337817 AAGATCCATTTGATCATTTTATCCTCTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 613370 28 - 3237654 AAGATCCATTTGATCATTTTATCCTCTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19145129 28 + 50472720 AAGATCCATTTGATCATTTTATCCTCTG i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2493688 28 + 13128814 AAGATCCATTTGATCATTTTATCCTCTG i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7031261 28 - 14377064 AAGATCCATTTGATCATTTTATCCTCTG i cebCap1.NW_016107322v1 I 1 C 0 s aotNan1.NW_018487195v1 6078949 28 + 9889416 AAGATCCATTTGATCATTTTATCCTCTG i aotNan1.NW_018487195v1 I 1 C 0 s micMur3.chr31 16847265 28 + 47401472 AAGATCCATTTGATCATTTTATCCTCTG i micMur3.chr31 I 1 I 3 s proCoq1.NW_012147997v1 1222907 28 - 2312742 AAGATCCATTTGATCATTTTATCCTCCA i proCoq1.NW_012147997v1 I 1 I 31 s otoGar3.GL873528 18330817 28 - 38779656 AAGATCCATTTGATCATTTTGTCCTTTG i otoGar3.GL873528 I 1 I 3 s mm10.chr16 75830569 28 + 98207768 GCGATGCATGTTATCACTGAATCTTTTG i mm10.chr16 C 0 I 2 s canFam3.chr31 11446393 28 + 39895921 AAGATCCATTTGATCATTCTATCCTCTG i canFam3.chr31 I 1 I 3 s dasNov3.JH568778 641599 28 - 6883506 AAAATCTCCTTGATGATTTTATCCTCTG i dasNov3.JH568778 C 0 I 3 a score=346126.000000 s hg38.chr21_GL383578v2_alt 40932 30 + 63917 GGAAGCTACAATG--TCTACATCTTTCT-TTTA s panTro5.chr21 878434 30 + 33445071 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14563085 30 + 46275980 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 475189 30 - 13858734 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1597380 30 + 32716333 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669923 30 - 185818997 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159477997 30 - 192294377 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5922788 30 + 9440265 GGAAGCTACAATG--TCTACATCTTTCT-TTTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5662138 30 + 21915920 GGAAGCTACAATG--TCTACACTCTCTC-TCTC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12306568 30 - 90373283 GGAAGCTACAATG--TTTACATCTTTCT-TTTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 634471 30 + 1337817 GGAAGCTACAATG--TCTACATCTTTCT-TCTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 613398 30 - 3237654 GGAAGCTACAATG--TGTACATCTTTCT-TTTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19145157 30 + 50472720 GGAAGCTACAATG--TCTTCATCCTTCT-TTTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2493716 30 + 13128814 GGAAGCTACAATG--TTTACGTCCTTCT-TTTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7031289 30 - 14377064 GGAAGCTACAATG--TCTACGTCCTTCT-TTTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6078977 30 + 9889416 GGAAGTTACAATG--TCTATGTTCTTCT-TTTA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16847296 26 + 47401472 TGAGACTAAAATG--TCTATGTCTTTTA----- i micMur3.chr31 I 3 I 2 s otoGar3.GL873528 18330848 27 - 38779656 TGAGGCTAAAATG--CCTATGTCCTTTTA---- i otoGar3.GL873528 I 3 C 0 s mm10.chr16 75830599 26 + 98207768 TGAAGCTAAAAGGCTTCTCCATTTTG------- i mm10.chr16 I 2 C 0 s canFam3.chr31 11446424 30 + 39895921 TGAAACCAAAATG--TCTATATCCTGCT-TTTA i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 641630 29 - 6883506 TGAAAATA-AATG--TCAATGTCTTGCT-TTTA i dasNov3.JH568778 I 3 C 0 e proCoq1.NW_012147997v1 1222935 31 - 2312742 I a score=8734867.000000 s hg38.chr21_GL383578v2_alt 40962 547 + 63917 TTAAA---------AAGTTCGTTAG-AATGTAACCCATTC-CACCCTCTTCAACCACACC---CCCGCCCACGCAGCCCCGGTTTTGTCTATTAAACAAATTCTGTTTTGAGATCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCTCAAAACTGTTTTAATTTGTGTAACAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-GAt-----------ttt--------------------------ttttttttttttttt------------------------------------CCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTCGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTCGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATTCCTTGGAGACCACCGGTCTTCTCATGTGTGACATTATTCCCATTCTCATACTG s panTro5.chr21 878464 540 + 33445071 TTAAA---------AAGTTCGTTAG-AATGTAACCCATTC-CACCCTCTTCAACCACACC---CCCGCCCACGCAGCCCCGGTTTTGTCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCTCAAAACTGTTTTAATTTGTGTAACAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-GAT-----------TTT--------------------------TTTTTTTTT------------------------------------------CCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTT-CACATGAAATCACCTGATTTTCCTCGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTTGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATTCCTTGGAGACCACCGGTCTTCTCATGTGTGACATTATTCCCATTCTCATACTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14563115 539 + 46275980 TTAAA---------AAGTTCGTTAG-AATGTAACCCATTC-CACCCTCTTCAACCACACC---CCCGCCCACGCAGCCCCGGTTTTGTCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCTCAAAACTGTTTTAATTTGTGTAACAAGGCTACTGCA-GAGGGA-TATTTGCTAGCA------GGAGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-G-T-----------ATT--------------------------TTTTTTTTT------------------------------------------CCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTT-CACATGAAATCACCTGATTTTCCTCGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTTGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATTCCTTGGAGACCACCGGTCTTCTCATGTGTGACATTATTCCCATTCTCATACTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 475219 545 - 13858734 TTAAA---------AAGTTCGTTAG-AATGTAACCCATTC-CACCCTCTTCAACCACATC---CCCGCCCACGCAGCCCCGGTTTTGTCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCTCAAAACCGTTTTAATTTGTGTAACAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-GAt-----------ttt--------------------------ttttttttt--tttt------------------------------------CCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACATTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTTGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATTCCTTGGAGACCACCGGTCTTCTCATGTGTGACATTATTCCCATTCTCATACTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1597410 538 + 32716333 TTAAA---------AAGTTCGTTAG-AATGTAACCCATTC-CACCCCCTTCAACCACACC---CCCGCCCACGCAACCCCTGTTTTGTCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCGAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACTGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------AGAGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-GAT-----------TTT--------------------------TTTTTT---------------------------------------------CCTTTAAGAATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCCTGTAACATTACGTTTTACTGCTTAGGCAACACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAGAAAGAAGGCTGCGATTCTCTCTTGGGGAGAGAAAAATTGCCCTCTCACAAGCGGGAAGT-TGATATTCCTTGGAGACCACCGGTCTTCTTATGTGTGACATTATTCCCATTATCATACTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152669953 547 - 185818997 TTAAA---------AAGTTTGTTAG-AATATAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACCGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAATATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-AAG-----------ttt--------------------------ttttttttttttttt------------------------------------CCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTGGGGGAGAGAAAAATTGCCCTCTCACAAGTAGGAAGT-TGATATACCTTGGAGGCCACCGGTCTTCTCATGTGTGACATTATTCCCATTATCATACCG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159478027 547 - 192294377 TTAAA---------AAGTTTGTTAG-AATATAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACCGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAATATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-AAG-----------ttt--------------------------ttttttttttttttt------------------------------------CCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTGGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATACCTTGGAGGCCACCGGTCTTCTCATGTGTGACATTATTCCCATTATCATACCG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5922818 583 + 9440265 TTAAA---------AAGTTTGTTAG-AATATAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACCGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAATATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-AAG-----------ttt--------------------------tttttttgtttttttttttttcttttatctttattttcttttttttttttATCTTTAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTGGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATACCTTGGAGGCCACCGGTCTTCTCATGTGTGACATTATTCCCATTATCATACCG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5662168 538 + 21915920 TCTAA---------AAGTTTGTTAG-AATATAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACCGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAATATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGCTCTCTCTCTCTCT-AAG-----------TTT--------------------------TTTTTT---------------------------------------------CCTTTAAAGATGATCAAGATATTTAGATTCCAGAGCTCTCTCTCTCTCTATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCTCTCTCTCTCTCTTAGCAGTTTGTTAGAAGTTGACACATTTGCACC-TTTTAAATAGctttctctctctctctcttgattctctctGGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATACCTTGGAGGCCACCGGTCTTCTCATGTGTGACATTATTCCCATTATCATACCG i cerAty1.NW_012002954v1 C 0 I 15 s chlSab2.chr2 12306598 553 - 90373283 TTAAA---------AAGTTCTTTAC-AATGTAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTATTAAACAAATACTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACCATTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAATATTGATCCAGTAATGGAG---TTGCAGTTCAATTGCGGTGACAAGAAGCCC-AAGGtttt------ttt--------------------------ttttttttttttcttt-----------------------------------CCTTGAAGGATGATCAAGATATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTATTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATCGCTTTCAAAAAGAAGGCTGTGATTCTCTCTGGGGGAGAGGAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATACCTTGGAGGCCACCGGTCTTCTCATGTGTGACATTATTCCCATTATCATACTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 634501 548 + 1337817 TTAAA---------AAGTTCGTTAG-AATATAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTATTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACCGTTTTAATttgtgtagcaaggctactcca-gaggga-tatttgctagca------ggaatattgatccagtaatggag---ttgcagttcaattgcggtgacaagaagccc-aag-----------ttt--------------------------ttttttttttttttcc-----------------------------------cctttaaagatgatcaagataTTTAGATTCCAGAGGGCAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTGGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGT-TGATATACCTTGGAGGCCACCGGTCTTCTCATGTGTGACATTATTCCCATTATCATACCG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 613428 546 - 3237654 TTAAA---------AAGTTCATTAG-AATGTAACCTATTC-TATCCCCTTCAACCACACC---CCCGCCCACCCAGCCCCTGTTTTGCCTGTTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-GCCCCCTCCCAAAACTGTTTTAATTTGTATAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAATATTGATCCAGTAATGGAG---TTGCAGCTCAATTGCAGTGACAAGAAGCCC-AAt-----------ttt--------------------------tttttttttttttt-------------------------------------CCTTTAAGGATGATCAAGTTATTTAGATTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGTTAGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTGATTCTCTCTGGGGGAGAGAAAAATTGCCCTCTCACACGTGGGAAGT-TGATATACCTTGGAGGCCACCAGTCTTCTCATGTGTGACATTATTCCCATTATCATACTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19145187 534 + 50472720 TT-AA---------AAGTTCTTTAG-AATGTAACCCATTC-CAGCCCCTTCAACCACACC---CCCACCCTCCCAGCCTCCGATTTGTCTGTTAAACAAATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACTGTTTCAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TA-TTGCTAGCA------GGAGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGTGGTGACAAGAAGCCC-T------------------------------------------CCTTTTTTT------------------------------------------CCTTTAAGGATGATGGAGATATTTGGACTTCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCGTTAGCAGTTTGCTCGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAGAATGAAGGCTGTGATTCCCTCTTGGGGAGAGAAAAATTGCTCTCTCACAAGTGGGAAGC-TGATATTCCTTGGAGACCACCGGTCTTCTTATGTGTGACATTATCCCCATTATCATACTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2493746 563 + 13128814 TTAAA---------AAGTTCATTAGAAATGTAACCCATTC-CACCCCCTTCAACCACACC-------CCCTCCCAGCCTCAGACTTGTCTATTAAACAAATTCTGTTTTGAGACCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCTCCCTCCCAAAACTGTTTTAATTTGTGTAGGAAGGCTACTCCA-GAGGAA-TA-TTGCTAGCA------GGAGTATTGATTCAGTAATGGAG---TTGCAGTTCAATTGTGGTGACAAGAAGCCC-TGt-----------ttttttgttttttttttttttttgttttgttttttttt------------------------------------------tctttAAGAATGAT-GAGATATTTAGACTTCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTATGTTTTACTGCTTAGGCAATACACTTGCTTTAGCAGTTTGCTCGAAGTTCACACATTTGCACCTTTTTAAATAGCTTTCGGAATGAAGGCTGTGATTCCCTCTTGGGGAGAGAGAAATTGCCCTCTCACAAGTGGGAAGC-TGATATTCCTTGGAGACCACCAGTCTTCTCACGTGTGACATTATCCCCATTATCATGCTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7031319 538 - 14377064 TTAAA---------AAGTTCATTAG-AATGTAACCCATTC-CACCCCCTTCAACCACACC---CCCACCCTCCCAGCCTCTGATTTGTCTATTAAAC-AATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCGCCCAAAACTGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TA-TTGCTAGCA------GGAGTATTGATCCAGTAATGGAG---CTGCAGTTCAATTGTGGTGACAAGAAGCCC-TAT-----------TT---------------------------TTTTTTTTT------------------------------------------CCTTTAAGAATGATAGAGATATTTAGACTTCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTACGTTTTACTGCTTAGGCAATACACTTGCTTTAGCAGTTTGCTCTAATCTCACACATTTGCACC-TTTTAAATAGCTTTCAGAATGAAGGCTGTGACTCCCTCTTGGGAAGAGAAAAATTGCCCTCTCACAAGTGGGAAGC-TGATATTCCTTGGAGACTACCGGCCTTCTCACGTGTGACATTATCCCCATTATCATACTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6079007 534 + 9889416 TTAAA---------AAGTTCATTAG-AATGTAACCCATTC-CACCCCCTTCAACCACACT---CCCACCCTCCCAGCCTCTGATTTGTCTATTA----AATTCTGTTTTGAGGTCA---TTTT---CCCTAAGTTTCCCAGAATTACTACT-CCCCCCTCCCAAAACTGTTTTAATTTGTGTAGCAAGGCTACTCCA-GAGGGA-TA-TTGCTAGCA------GGGGTATTGATCCAGTAATGGAG---TTGCAGTTCAATTGTGGTGACAAGAAGCCC-TAT-----------T----------------------------TTTTTTTTT------------------------------------------CCTTTAAGGATGATAGAGATATTTAGACTTCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTCCTTGTGACATTATGTTTTACTGCTTAGGCAATACACTTGCTTTAGCAGTTTGCTTGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAGAATGAAGGCTGTGATTCCCTCTTGGGGAGAGAAAAATTGCCCTCTCACAAGTGGGAAGC-TGATATTCCTTGGAGACCACTGGTCTTCTCACGTGTGATATTATCCCCATTATCATGCTG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16847324 548 + 47401472 TTAAA---------AAGTACATTAT--ATGTAAACCATTC-CACCCTCTTCAACCACACC---CACACCCACCCAGCCCCAGTTCTATCTATTAAACAAATTCTGTTTTGAGGTCATTATTTT---CCTCAAGTTTCCCAGAATTACCACT-CCTCCCTCCCAAAACTGTTTAAATTCTTGTAGCAAGGCTACTCCA-GAGGGA-TATTTGCTAGCA------GGAGTATTGATTCAGTAATGGAG---TTGCAGTTCAATTGTGGTGACAAGAAGCCT-GATGCCTTA------TT--------------------------TTTTCCCTC------------------------------------------CCTTTAAGGATGATCAAGATATTTAGACTCCAGAGGGTAAAATTTGCACATGAAGTCACCTGATTTTACTTGTGACATTACTTTTTACTGCTTAGGCAATACACTTGCCTTAGCAGTTTGCTCAAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGACTGTCATTCCCTCTTTGGGAAAGAAAAATTACATTCTCACAAGTGGCAAGT-TGATATTCGCAGGAGATCACCAGTCTTTTCAGGTGTGACATTATTCCTATTATCCTACTG i micMur3.chr31 I 2 C 0 s proCoq1.NW_012147997v1 1222966 555 - 2312742 TTAAA---------GAGTATATTAC-AATGTAAACCATTT-CACCCTCTTCAACCACACC---CACACCCACCCAGCCCCAGTTCTATCTATTAAACAAATTCTGTTTTGAAGTCATTGTTTT---CCCCAAGTTTCCCAGAATTACCACT-CCTCCCTCCCAAAACTATTTTAATTCGTGTAGCAAGGCTACTCCA-GGGGGA-TATTTGCTAGCG------GGAGTATTGATTCAGTAATGGAG---TTGCAGTTCAATTGTGGTGACAAGAAGCCTGGATGCCTTATGTTTTTT--------------------------TTTTTTCCC------------------------------------------CCTTTAAGGATGATCAAGATATTTAGACTCCAGAGGGTAAAATTTGCACATGAAATCACCTGATTTTACTTGTGACATTACTTTTTACTGCTTAGGCAATACACTTGCATTAGCAGTTTGCTCGAAGTTCACACATTTGCACC-TTTTAAACAGCTTTCAAAAAGAAGGCTGTCATTCCCTCTTTGGGAAAGAAAAAATGCATTCTCACAAGTGGCAAGT-TGATATTCCCAGGAGATCACCAGTCTTTTCAGGTGTGACATTATTCCTA-TATCCTACTG i proCoq1.NW_012147997v1 I 31 C 0 s otoGar3.GL873528 18330875 535 - 38779656 TTTAA---------AAATACATTAT-AATGTACACCATTC-CACCCCCTTCGACCACACC---CGTACTCACTCAGCCCCAGCTCTCTCTATTAAACAAATTCTGTTTTGAGGTCATTATTTT--CCCCCCAGTTTCCCAGAATCACTACT-CCCTTCTCCCCAAACTGCTTTAATTCGTGCAGCGAGGCTCCTCCG-GAGGGA-TATTTACTAGCA------GGAATATTGATTCAGTAATGGAG---TTGCAGTTCAATTGTGGTGACAAGAAGCCT-GAT-----------------------------------------------TT------------------------------------------CTCTTAAGGATGATCAAGATATTTAGACTCCAGAGGGTAAAATTTGCACATAAAATCACCTGATTTCACTTGTGACATTACTTTTTACTGCTCAGGCAATACACTTACCTTAGCAGTTTGCTCGAAGTTCACACATTTGCACC-TTTTAAATAGCTTTCAAAAAGAAGGCTGTCATTCCTTCTGTGGGAAAGAAAAATTGCCTTCTCCCAAATGGGGAGT-TGATATTCCCAGAAGACTGCCAGTCTCTTCAGGTGTAACATTATTCCCATTATCATTCTA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75830625 519 + 98207768 -TAAAACCAAAACCAAAATCATAAT-TATAGAAACAAT---CATACCCTTTCACGACACCTTACCCACCTAGCAAACTATGTCCCCATCACTTAAGGGAATCCTGTCATGGGGCCA---CTTTTCCCTCCCAGCTTCTCAGCATGACTGCC-TCATCCTCCCAAACCTGCTTTTCTCTGTATAGAAGCACCAGTTCA-AAAGGG-TGTTTGCTATTAATAATGAGAATATTGATTCAGAAAAAAAAAACCTGAAGTTCAGCTGTGCTGACAAGAAGCCT-GTT-----------ATT--------------------------TT-------------------------------------------------CC---AAGAATGATAAACATATTTACATTCTGGGTGATAAAAAATGAACATGAAATAACTTGGTTTTACTTATGACCTTACTTCTGACTGCTTAAGCAA------------AGCAA-TTGTTTGAAGTTCACAGATTTGCACT-TTTTGAATACTTT-------------------TCTTTCTTTGAAGAAGAAAAATTGTCTTCTCCAAAATGGGAAGT-TGATGTTCCCATGAGACCACCTGCCTTCTCATGTGAGACATCATTCC-AGCACCGTACTG i mm10.chr16 C 0 C 0 s canFam3.chr31 11446454 547 + 39895921 TTAAA---------AAATTCATCAA-AATGTAAGTCATTCATACTCCTTTCAGCCACACC---CCCACTCACCCAGCCCTAGTTCTGTCTATTAAATAAATTCTCTTTTGAAGTCATTATTTT---TCCCAAGTTTCCCAGCATTACCACTCCCCCCCTCCCAAAACTGTTCTAATTTGTATAGCAAGACTACTTCATAAGGGA-TATTTGCTAGCA------GGAGTATTGATTCAGTAATGGAG---CTGCAGTTCAATTGTGGTGACTAGAAGCCT-GAT-----------TTT--------------------------TTTTTTCTTT-----------------------------------------TCTTTAAGGATCATCAAAATATTTAGACTCTAATGTATAAAATTTGTACATGAAATCACCTGATTTTATCTGTGTCATTTCTTTTTGC-ACTTAGGCAATACACCTGCCTTAACAGTTTGCTCAAAGTTCACACATTTGTACC--TTTGAATAGCTTTCAAAAAGGAGGCTGTCATTCCCTCTTTGGAAAAGAAAAATTGCTTTTTGACAAGAAGGAAGTGTGATATTCCTCAGAGTCCACCAGTCCTCTAATGTGTGACATTATTCCCATTATCATACTG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 641659 538 - 6883506 TTAAA---------AAATTAATCAT-AATGTAAGCTATTC-CACTCCCTTCAGTCACACC---CCTAC-CACCCAGCCCTGAT----CCTATTATACAAATTCTGTTTTGAAGTCATTATCTT---CCTCAAATTTCCCAGAATTACCACC-CCCACCCC---ATATTATTTTAATTTGTGCAGCAAGGC-ACTCCA-AAAGGAGTACTTGCTAGAG------GGAATATTGATTCAGTAATGGAC---CTGCATTTCAATTGTGGTGACAAGAAGCCT-GAT-----------TTT--------------------------TTTTTTTTTTT----------------------------------------TCTTTAAGGATGATCAAGATGTTTAGACTCCAGAGGGTAAAATTTATACATAACATCACCTGATTTTACTTGTCCCATTTCTTTTCACTGCTTAAGCAATGCACCTGGCTTCACAGTTTGCTCTAAGTTCACACATTTGTGCC-TTTTGAACAACTTTCAAAAAGAAGGCTGTCTTTCCCCCTCTGGGAAAGAAAAGTTGCCTTCTAACAACTGAGAAGC-TGATATTCCTTGGAGCCCATCGGTCTCCTCATGTGTGGCATTATTCCCATTATCATATTG i dasNov3.JH568778 C 0 C 0 a score=217720.000000 s hg38.chr21_GL383578v2_alt 41509 15 + 63917 AGACTCTTACAGACT s panTro5.chr21 879004 15 + 33445071 GGACTCTTACAGACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14563654 15 + 46275980 GGACTCTTACAGACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 475764 15 - 13858734 GGACTCTTACAGACT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1597948 15 + 32716333 GGACTCTCACAGACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152670500 15 - 185818997 GGACTCGTACAGACT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159478574 15 - 192294377 GGACTCGTACAGACT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5923401 15 + 9440265 GGACTCGTACAGACT i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12307151 15 - 90373283 GGACTCGTGTAGACT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635049 15 + 1337817 GGACTCGTACAGACT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 613974 15 - 3237654 GGACTCGTGCAGACT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19145721 15 + 50472720 GGACTCTCACAGACT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2494309 15 + 13128814 GGACTCTCACAGACT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7031857 15 - 14377064 GGACTCTCACAGACT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6079541 15 + 9889416 GGACTCTCACAGACT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16847872 14 + 47401472 -GACTCTTATGGACT i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1223521 14 - 2312742 -GACTCTTACGGACT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18331410 14 - 38779656 -GACTTTTATGGACT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831144 14 + 98207768 CGACTCTCG-AGACT i mm10.chr16 C 0 C 0 s canFam3.chr31 11447001 15 + 39895921 GGGCTCTTACAGACT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642197 15 - 6883506 GGACTCTTACATACT i dasNov3.JH568778 C 0 C 0 e cerAty1.NW_012002954v1 5662706 15 + 21915920 I a score=3358229.000000 s hg38.chr21_GL383578v2_alt 41524 229 + 63917 TTATGTGAagcacagtgtggtggaaggaacactaatgaggagccaggaggcctggctttcata--ctct--tctgctcttcatcagctgctgatgctggactaggcacttaacctttctgacggtcctcttcc-tctgccattttaaaacaagcataaGTTGCTATGTGATCTTACGGGCTCCTTTCCATTCTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG s panTro5.chr21 879019 229 + 33445071 TTATGTGAAATACAGTGTGgtggaaggaacactaatgaggagccaggaggcctggctttcata--ctct--tctgctcttcatcagctgctgatgctggactaggcacttaaccttcctcacggtcctcttcc-tctgccgttttaaaacaagcataagttgctatgtgatcttatgggctcctttccattctaaAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i panTro5.chr21 C 0 I 4 s panPan2.chr21 14563669 229 + 46275980 TTATGTGAagcacagtgtggtggaaggaacactaatgaggagccaggaggcctggctttcata--ctct--tctgctcttcatcagctgctgatgctggactaggcacttaacctttctcacggtcctcttcc-tctgccgttttaaaacaagcataaGTTGCTATGTGATCTTATGGGCTCCTTTCCATTCTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i panPan2.chr21 C 0 I 4 s gorGor5.CYUI01015003v1 475779 229 - 13858734 TTATTTGAAgcacagtgtggtggaaggaacactaatgaggagccaggaggcctggctttcata--ctct--tctgctcttcatcagctgctgatgctggactaggcacttaacctttctgacggtcctcttcc-tctgccattttaaaacaagcataagttgctatgtgatcttatgggctcctttccattctaaAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i gorGor5.CYUI01015003v1 C 0 I 4 s nomLeu3.chr25 1597963 228 + 32716333 TTATCTGAAgcacagtgtggtggaaggaacactaatgaggagccgggaggcctggctttcata--ctct--tccgctcttcatcagctgctgatgctggactaggcacttaacctttctgacgttccccttcc-tctgcca-tttaaaacaagcaaaaggagctatgtgatcttgtgggctcctttccattctaaAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i nomLeu3.chr25 C 0 I 4 s rheMac8.chr3 152670515 228 - 185818997 TTGTCTGAagcagagtgtggtggaaggaacacgaatgaggagccaggaggcttggctttcata--ctct--tcagctgttcaccagctgttgatgctggactaggcacttaacctttctgacgctcctgttcc-tctgccg-tttaaaacaaggataaggagctatgtgatctgatgggctcctttccaTTTTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i rheMac8.chr3 C 0 I 4 s macFas5.chr3 159478589 228 - 192294377 TTGTCTGAAgcagagtgtggtggaaggaacacgaatgaggagccaggaggcctggctttcata--ctct--tcagctgttcaccagctgttgatgctggactaggcacttaacctttctgacgctcctgttcc-tctgccg-tttaaaacaaggataaggagctatgtgatctgatgggctcctttccaTTTTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i macFas5.chr3 C 0 I 4 s macNem1.NW_012019910v1 5923416 228 + 9440265 TTATCTGAagcagagtgtggtggaaggaacacgaatgaggagccaggaggcctggctttcata--ctct--tcagctgttcaccagctgttgatgctggactaggcacttaacctttctgacgctcctgttcc-tctgccg-tttaaaacaaggataaggagctatgtgatctgatgggctcctttccaTTTTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i macNem1.NW_012019910v1 C 0 I 4 s cerAty1.NW_012002954v1 5662721 228 + 21915920 TTATCTgaagcagagtgtggtggaaggaacacgaatgaggagccaggaggcctggctttcata--ctct--tcagctgttcaccagctgttgatgctggactaggcacttaacctttctgacgctcctattcc-tctgccg-tttaaaacaaggataaggagctatgtgatctgctctctctcTCTCTATTTTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i cerAty1.NW_012002954v1 I 15 I 10 s chlSab2.chr2 12307166 228 - 90373283 TTATCTGAAgcagagtgtggtggaaggaacacaaatgaggagccaggaggcctggctttcata--ctct--tcagctgttcaccagctgttgatgctggactaggcactgaacctttctgatgctcctgttcc-tctgccg-tttaaaacaaggataaggagctatgtgatctgatgggctcctttccaTTTTAAAAGACAAACCAAAGTATAACAAGCTTAAAATATTAATAG i chlSab2.chr2 C 0 I 4 s manLeu1.NW_012107264v1 635064 228 + 1337817 TTATCTGAagcagagtgtggtggaaggaacacgaatgaggagccaggaggcctggctttcata--ctct--tcagctgttcaccagctgttgatgctggactaggcacttaacctttctgacgctcctattcc-tctgccg-tttaaaacaaggataaggagctatgtgatctgatgggctcctttccaTTTTAAAAGACAAACCAAGGTATAACAAGCTTAAAATATTAATAG i manLeu1.NW_012107264v1 C 0 I 4 s colAng1.NW_012116933v1 613989 228 - 3237654 TTATCTGAAgcagagtgtggtggaaggaacacgaatgaggagccaggaggcctggctttcata--ctct--tcagctgtccaccagctgttgatgctggactaggcacttaacctttctgacgctcctgttcc-tctgcca-tttaaaacaagcataaggagctatgtgatctgatgggctcctttccaTTTTAAAAGACAAACCAAGTTATAACAAGCTTAAAATATTAATAG i colAng1.NW_012116933v1 C 0 I 4 s calJac3.chr21 19145736 228 + 50472720 TTCCCTGAagcacggtgtggtggaaagaacactaatgaggagccaggaggcctggctttgata--ctct--tctgctcttcaccagctgctgatgctgaactaggcacttaacctttctgtgggtcctcttcc-tctgcca-tttaaaacaagcataaggagctatgtgatctgatgggctcctttccagtctaaaatACAAACCAAGATATAACAAGCTTAAAATATTAATAG i calJac3.chr21 C 0 I 4 s saiBol1.JH378168 2494324 221 + 13128814 TTCCCTGAagcacggtgtggtggaaagaacactaatg-------aggaggcctggctttgata--ctct--tctgctcttcaccagctgccgatgctgatctgggcactgaacctttctgcgggtcctcttcc-tctgcca-tttaaaacaagcataaGGAGCTTTGTGATCTGATGGACTCCTTTCCATTCTAAAATACAAACCAAGATATAGCAAGCTTAAAATATTAATAG i saiBol1.JH378168 C 0 I 4 s cebCap1.NW_016107322v1 7031872 223 - 14377064 TTCCCtgaagtac-----agtggaaagaacactaatgaggagccaggaggcctggctttgata--ctct--tctgctcttcaccagctgctgatgctgaactaggcacttaacctttctgagggtactcttcc-tctgcca-tttaaaacaagcataaggagctatgtgatctgatgggctcctttccattctaaaatACAAACCAAGATACAACAAGCTTAAAATATTAATAG i cebCap1.NW_016107322v1 C 0 I 4 s aotNan1.NW_018487195v1 6079556 228 + 9889416 TTCTCTGAAGCTCggtgtggtggaaggaacactaatgaggagccaggaggcctggctttgata--ctct--tctgctcttcaccagctgctgatgctgaactaggcacttaacctttctgagagtcctcttcc-tctgcca-tttgaaacaagcataaggagctatgtgatctgatgggctccttcccattctaaaatACAAACCAAGATATAACAAGCTTAAAATATTAATAG i aotNan1.NW_018487195v1 C 0 I 4 s micMur3.chr31 16847886 224 + 47401472 TTATCTGAagcacagcgcggtgaa---agaactaattagcagacaggaggcctggctttgatg--ctctcccctgctcttcactagctgctgatgctggaccaagcacttaacctttctgggggt-ctcttcc-tctgcca-tttaaagcaagcataaggacctatgtgatctcatgggtctctttcaattcaaaaaagcaaacaaatgtatgacaagcttaaaataTG--TAG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1223535 228 - 2312742 TTATCTGAAgcaaagtgcggtgaaaggagaactaattagcaggcaggaggcctggctttgatg--ctctcccctgctcttcactagctgctgatgctggaccaggcacttaacctttctgggggtcctcttcc-tctgcca-cttaaagcaagcataaggaactacatgatctcatgggttcctttcaattcAAAAAGGCAAACAAATATATAATAAGCTCAAAATATT--TAG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18331424 227 - 38779656 TTATCTagagcgcagtgtagagaagggagcactgatcaggaggcaggcggcct-cctttgatg--ccctcccctgctctccactggctgctgatgctggaccaggcacttaacctttctgggggtcttcttcc-tctgctg-tttgaagcaagcataaggaactatgtgatcttatgggtccctttcaattcAAAAAGGCAAACAAGTACATAATAGGCTTAAAACATT--TAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831158 224 + 98207768 --ATCCGAAGCCAAGCTTGGTGAAAGGACCATTAATTAGGAACCGGAAGGCTCGGCTTTGTCA--CTTGCATGTGCTCCTCGCCGGTTGCTGACATAGGAGTAATCTTATAACCTTTCTGGGGGATCTTTACCATCTACCA-TTTAAAGCAAGGATGCGGAGCTACATTGCACGATGCA-TCCTTTACATTCAGACAGTCAAA--GAGCTATACCAACATTAAAATATGGCA-- i mm10.chr16 C 0 C 0 s canFam3.chr31 11447016 206 + 39895921 TTACCTGAAgcacagtgtggtggaaggagcactaattagcagtcaggagaactagctttggta--ttctcttctattcttcactagctgcttaaattggacc-tgtacttaaccttt-tgagtgtcctcttcc-tctgccc-tttaaagcaaaaatgagggactacatgatcttacaggtctttttcaA--------------------TATACCAGGCTTAAAATATT--TAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642212 225 - 6883506 TTGTGTG-AGCAC-TTTTGgtggaaggagcaataatgaggagccaggaggactagttgtgatagccttt--tctgtgcctcactagcagctgacattggaccaggcacttaacctttttgagagtcctcttcc-tctgcca-tttaaaacaagaatgaaga-ctctgtgatcttatgggtcttgttcagttcagaaaggcaaataaaagtagaacaagcttaaaacaTT--TAG i dasNov3.JH568778 C 0 C 0 a score=112650.000000 s hg38.chr21_GL383578v2_alt 41753 6 + 63917 CTTTGG s panTro5.chr21 879252 6 + 33445071 CTTTGG i panTro5.chr21 I 4 C 0 s panPan2.chr21 14563902 6 + 46275980 CTTTGG i panPan2.chr21 I 4 C 0 s gorGor5.CYUI01015003v1 476012 6 - 13858734 CTTTGG i gorGor5.CYUI01015003v1 I 4 C 0 s nomLeu3.chr25 1598195 6 + 32716333 CTTTGG i nomLeu3.chr25 I 4 C 0 s rheMac8.chr3 152670747 6 - 185818997 CTTTGG i rheMac8.chr3 I 4 C 0 s macFas5.chr3 159478821 6 - 192294377 CTTTGG i macFas5.chr3 I 4 C 0 s macNem1.NW_012019910v1 5923648 6 + 9440265 CTTTGG i macNem1.NW_012019910v1 I 4 C 0 s chlSab2.chr2 12307398 6 - 90373283 CTTTGG i chlSab2.chr2 I 4 C 0 s manLeu1.NW_012107264v1 635296 6 + 1337817 CTTTGG i manLeu1.NW_012107264v1 I 4 C 0 s colAng1.NW_012116933v1 614221 6 - 3237654 CTTTGG i colAng1.NW_012116933v1 I 4 C 0 s calJac3.chr21 19145968 6 + 50472720 CTTTGG i calJac3.chr21 I 4 C 0 s saiBol1.JH378168 2494549 6 + 13128814 CTTTGG i saiBol1.JH378168 I 4 C 0 s cebCap1.NW_016107322v1 7032099 6 - 14377064 CTTTGG i cebCap1.NW_016107322v1 I 4 C 0 s aotNan1.NW_018487195v1 6079788 6 + 9889416 CTTTGG i aotNan1.NW_018487195v1 I 4 C 0 s micMur3.chr31 16848110 6 + 47401472 CTTTGG i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1223763 6 - 2312742 CTTTGG i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18331651 6 - 38779656 CTTTGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831382 6 + 98207768 CTTCAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11447222 6 + 39895921 CTTTGG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642437 6 - 6883506 CTTTGG i dasNov3.JH568778 C 0 C 0 e cerAty1.NW_012002954v1 5662949 10 + 21915920 I a score=1546075.000000 s hg38.chr21_GL383578v2_alt 41759 112 + 63917 TATGAGTTGAAAATGGACAGTGTCAAAAAAAAA-ACTTTAAATCATTTTTGTTTTAAT-GTATTCCTTAATGCTAGTGTGAGAAACTCATTTCTTTCATCTGAGATTTTTAACC s panTro5.chr21 879258 111 + 33445071 TATGAGTTGAAAATGGACAGTGTCAAAAAAAAA--CTTTAAATCATTTTTGTTTTAAC-GTATTCCTTAATGCTAATGTGAGAAACTCATTTCTTTCATCTGAGATTTTTAACC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14563908 111 + 46275980 TATGAGTTGAAAATGGACAGTGTCAAAAAAAAA--CTTTAAATCATTTTTGTTTTAAC-GTATTCCTTAATGCTAATGTGAGAAACTCATTTCTTTCATCTGAGATTTTTAACC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476018 112 - 13858734 TATGAGTTGAAAATGGACAGTGTCAAAAAAAAA-ACTTTAAATCATTTTTGTTTTAAT-GTATTCCTTAATGCTAGTGTGAGAAACTCATTTCTTTCATCTGAGATTTTTAACC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598201 113 + 32716333 TATGAGTTGAAAATGGACAGTGTCAAAAAAAAAAACTTCAAATCATTTTTGTTTTAAC-GTATTCCTTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152670753 113 - 185818997 TATGAGTTGAAAATGAACAGTGTCAAAAAAAAAACCTTTAAATCATTTTTGTTTTAAT-GTGTTCGTTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159478827 113 - 192294377 TATGAGTTGAAAATGAACAGTGTCAAAAAAAAAACCTTTAAATCATTTTTGTTTTAAT-GTGTTCGTTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5923654 113 + 9440265 TATGAGTTGAAAATGAACAGTGTCAAAAAAAAAACCTTTAAATCATTTTTGTTTTAAT-GTGTTCGTTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5662959 113 + 21915920 TCTCTGTTGAAAATGAACAGTGTCAAAAAAAAAAACTTTAAATCATTTTTGTCTCTCT-CTCTCTCTTAATGCTAATGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i cerAty1.NW_012002954v1 I 10 I 15 s chlSab2.chr2 12307404 112 - 90373283 TATGAGTTGAAAATGAACAGTGTC-AAAAAAAACCCTTTAAATCATTTTTGTTTTCAT-GTGTTCGTTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635302 112 + 1337817 TATGAGTTGAAAATCAACAGTGTC-AAAAAAAAAACTTTAAATCATTTTTGTTTTAAT-GTGTTCATTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614227 111 - 3237654 TATGAGTTGAAAATGGACAGTGTC--AAAAAAAACCTTTAAATCATTTTTGTTTTAAT-GTGTTTGTTAATGCTAGTGTGAATAACTCATTTCTTTCACCTGAGATTTTCAACC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19145974 112 + 50472720 TATGAATTGAGAATGGACAGTGTC-AAAGGAAACACTTTAAATCATTTTTGTTTTAAT-GTATTCCTTAATGCTAGTGTGAATAACTCATTTCTTTTATCTGAGATTTTTAACC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2494555 112 + 13128814 TATGAATTGAGAATGGGCAGTGTC-AAAGGAAACACTTTAAATCATTTTTGTTTTAAT-GTATTCCTTAATGCTAGTGTGAAGAACTCATTTCTTTCATCTGAGATTTTTAACC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032105 112 - 14377064 TATGAATTGAGAATGGACAGTGTC-AAAGGAAACACTTTAAATCATTTTTGTTTTAAT-GTATTCCTTAATGCTAGTGTGAATAACTCATTTCTTTCATCTGAGATTTTTAACC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6079794 112 + 9889416 TATGAATTGAGAATGGACAGTGTC-AAAGGAAACACTTTAAATCATTTTTGTTTTAAT-GTATTCCTTAATGCTAGTGTGAATAACTCATTTCTTTGGTCTGAGATTTTTAACC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848116 112 + 47401472 TATGAATTTAGAATAGACAGTGTC-AAAGGAAATGCTTTAAATCTTTTTTGTTTTAAT-GCATACCTTAATGTTGGTTTTAATAACTCATTTATTTCATCTGGAGTTTTTCATC i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1223769 112 - 2312742 TATGAATTTGGAATGGACAATGTC-AAAGGAAATGCTTTAAATCTTTTTTGTTTTAAT-GCATACCTTAATGTTGGTTTAAATAACTCATTTATTTCATCTGGACTTTTTCATC i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18331657 106 - 38779656 TATGAATTTAGAATGAACAACATC-AAAGGAAATGCTTTAAATCCTTTTTGTTCTAAT-GCATTCCTTAATTTTGG------TAAAGCATTTGTTTCATCTGAGATTTTTAATC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831388 81 + 98207768 TATTACGTTAGGAAGGGCACCATC-AGGGGAAAGACTTCAACCCCCTTTTCCTTTAAC-GACTTCCTTAGTG------------------TTCGGCTATCT------------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11447228 112 + 39895921 CATGAATTTAGAATGGACAGTATC-AAATGAAACACTTTAAATGTTTTTCATTTTGAT-ATACTCCTTAATGTTGATATAAACCACAAATTTCTCTCATCTGAGATTTTTAACA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642443 98 - 6883506 AATGAATTTAGAATGGGCAGTGTTTGAATGAAATAACTTAAATCCTTTT----CTAATGGAACTCCTTAAT------------AATTCATTTCTTTCATCTGGGATTTTTAACC i dasNov3.JH568778 C 0 C 0 a score=196387.000000 s hg38.chr21_GL383578v2_alt 41871 15 + 63917 AAAAGCTGGCCCTGT s panTro5.chr21 879369 15 + 33445071 AAAAGCTGGCCCTGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564019 15 + 46275980 AAAAGCTGGCCCTGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476130 15 - 13858734 AAAAGCTGGCCCTGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598314 15 + 32716333 AAAAGCTGGCCCTGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152670866 15 - 185818997 AAAAGCTGGCCCCGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159478940 15 - 192294377 AAAAGCTGGCCCTGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5923767 15 + 9440265 AAAAGCTGGCCCTGT i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12307516 15 - 90373283 AAAAGCTGGCCCTGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635414 15 + 1337817 AAAAGCTGGCCTTGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614338 15 - 3237654 AAAAGCTGGCCTTGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146086 15 + 50472720 AAAAGCTGGCTCTAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2494667 15 + 13128814 AAAAGCTGGCTCTAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032217 15 - 14377064 AAAAGCTGGCTCTAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6079906 15 + 9889416 AAAAGCTGGCTCTGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848228 15 + 47401472 CAAAACTGGTCCTAT i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1223881 15 - 2312742 CAAAACGAGTCCTAT i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18331763 15 - 38779656 AAAACCAGGCCCTGT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11447340 15 + 39895921 TAAAGCTGGCCCTAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642541 15 - 6883506 CAAAATGGGTCCTTT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75831469 0 + 98207768 C e cerAty1.NW_012002954v1 5663072 15 + 21915920 I a score=4383888.000000 s hg38.chr21_GL383578v2_alt 41886 257 + 63917 TGTCCTCACT---TCTGA-----TGAGACAATC-TGAGAACCTTGCATAGGGTGTGGATGTGGAACATGTTGAGCTGATGTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCGTTTCCCATCAGACTGATGTTCACACTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTGCATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTAGGAAAGAAGAAA s panTro5.chr21 879384 257 + 33445071 TGTCCTCACT---TCTGA-----TGAGACAATC-TGAGAACCTTGCATAGGGTGTGAATATGGAAAATGTTGAGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCTATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTGCATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTAGGAAAGAAGAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564034 257 + 46275980 TGTCCTCACT---TCTGA-----TGAGACAATC-TGAGAACCTTGCATAGGCTGTGAATATGGAAAATGTTGAGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCTATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTAAAA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTGCATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTAGGAAAGAAGAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476145 257 - 13858734 TGTCCTCACT---TCTGA-----TGAGACAATC-TGAGAACCTTGCATAGGGTGTGAATATGGAAAATGTTGAGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCTATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTC--T-----TTTTTT---CTC-AGCACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGGGAAAGAAGAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598329 257 + 32716333 TGTCCTCACT---TCTGA-----TGAGACAATC-TGAGAACCTTGCATAGGGTGTGAATATGGAAAATGTTGAGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAAGCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGGGAAAGAAGAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152670881 257 - 185818997 TGTCCTCACT---TCTGA-----TGAGACAACC-TGAGAACCTCGCATAGGGTGTGAATATGGAAAATGTTGCGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTATGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGGGAAAGAAGAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159478955 257 - 192294377 TGTCCTCACT---TCTGA-----TGAGACAACC-TGAGAACCTCGCATAGGGTGTGAATATGGAAAATGTTGCGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTATGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGGGAAAGAAGAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5923782 257 + 9440265 TGTCCTCACT---TCTGA-----TGAGACAACC-TGAGAACCTCGCATAGGGTGTGAATATGGAAAATGTTGCGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGGGAAAGAAGAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663087 257 + 21915920 TGTCCTCACT---TCTGA-----TGAGACAACC-TGAGAACCTCGCATAGGGTGTCTCTCTCTCTCTCTTTGCGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGAGAAAGAAGAAA i cerAty1.NW_012002954v1 I 15 C 0 s chlSab2.chr2 12307531 257 - 90373283 TGTCCTCACT---TCTGA-----TGAGACAACC-TGAGAACCTTGCATAGGGCGTGAATATGGAAAATGTTGAGCTGATTTCAGAGTTTTAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTTCATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGGGAAAGAAGAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635429 257 + 1337817 TGTCCTCACT---TCTGA-----TGAGACAACC-TGAGAACCTCGCATAGGGTGTGAATATGGAAAATGTTGCGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTGGCTATTAACTGAGAAAGAAGAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614353 257 - 3237654 TGTCCTCACT---TCTGA-----TGAGACAATC-TGAGAACCTTGCATAGGGTGTGAATATGGAAAATGTTACGCTGATTTCAGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGTTTTGTACGA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCAATTTCCCAGTACATGTAAACTCTGTG-TTAATTA-TTTTAGCTATTAACTTGGAAAGAAGAAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146101 255 + 50472720 TGTCCTCACT---TCTGA-----TGAGACACTC-TGAGAACCTTGCATCGGGTGTGAATATGGGAAATGATGAGCTGATTTCTGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTC----T-----TTTTTT---CTC-AACACAGCATTTTCCCAGTACACATAAACTCTGTG-CTAATTA-TTTTGGCTATTAACTGAGAAAGAAGAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2494682 256 + 13128814 TGTCCTCACT---TCTGA-----TGAGACACTCTTGAGAACCTTGCATAGGGTGTGAATATGGGAAATGATGAGCTGATTTCTGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTCTTT-----TTTTTT---CTC-AACACAGCACTTTCCCAGTACACGTAAACTCTGTG-CTAATTA-TTTTGGCTATTAACTG----AGAAGAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032232 257 - 14377064 TGTCCTCACT---TCTGA-----TGAGACACTC-TGAGAACCTTGCATAGGGTGTGAATATGGGAAATGATGAGCTGATTTCTGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGATTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTC--T-----TTTTCT---CTC-AACACAGCACTTTCCCAGTACACGTAAACTCTGCG-CTAATTA-TTTTGGCTATTAACTGAAAAAGAAGAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6079921 257 + 9889416 TGTCCTCACT---TCTGA-----TGAGACACTC-TGAGTACCTCGCATAGGGTGTGAATATGGGAAATGATGAGCTGATTTCTGAGTTTCAGTCACCTTT-----ACACAGCAGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTGCTTGGCCACAGGGTTTGTACAA--------TTTCTC--T-----TTTTTT---CTC-AACACAGCACTTTCCCAGTACACGTAAACTCTGTG-CTAATTA-TTTTGGCTATTAACTGAGAAAGAAGAAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848243 252 + 47401472 TCTCTGTACT---TCTGA-----TTTGATAGTC-TGAGAAGCTCATAGAGGGT---------------GCTGAGCTGATTTCCGAGTTTCAGTCACCTTTACTCCACACAGCTGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTACTTGGCTACGGGGTTTGCACAA--------TCTCTC--TCTCTCTTTTTT---CTC-AATACAGCACTTTCCCAGGACATGTAAACTCTGTG-TTAATTA-TTTTGGCTGTTAGCTAAGAAAGAAGAAA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1223896 260 - 2312742 TCTCTGTATT---TCTGA-----TTAGATACTC-TGAGAAGCTAATAGAGGGT---------------GTTGAGCTGATTTCCGAGTTTCAGTCACCTTTACCCCACACAACTGCATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTACTTGGCTACAGGGTTTGCACAATTtctctctctctc--tctctctctttt---ctc-AATACAGCACTTTACCAGGACATGTAAACTCTGTG-TTAATTA-TTTTGGCTGTTAGCTAAGAAAGAAGAAA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18331778 271 - 38779656 TGTCTATACT---TCTGA-----TCAGATACTC-TGAGAACCTCACCTAGGGTATGAGTATGGAAAACGTCAAGCTGATTGCCAAGTTTCGGTCTC--TTACCCCACACAGCCACATTTCCAATCAGACTGATGTTCACAGTTCTATTTCTGGCAGCAACCTACTTGGCTACAGGGTTTGTACAATTTC----TCTCTC--TCTCTCTTTTTC---CCCTGGCACAGCACTTTCTTAGGCCATGTAAACTCTGTGTTTAATTA-TTTTGGCTGTTAGCTAAGAAAGAAGAAA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831469 250 + 98207768 ---------------TGA-----TGACACACTC-TGAGACCCTTTCATAGGGTGTGAAGATGGAGAATGTTGAGCTGATTTCCTAACCTCAGCCACCTTTACCCCACACAGCAGCATTTCCAATCAGACCGATGTTCACAGTTCTATTTCTGGCAGCAAACTGCCTGGCCACAGGGTCTGTACAA--------TTTCTG--------CTTTTT---CTC-AACACAGCACTCTGCTTGTACATGTAAACTCTGTG-TTAATTATTTTTGGCTGTTAGCTGAGGAAGAAGAAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11447355 268 + 39895921 TCTCTTTATTTCCTCTGA-----CAAGATAGTC-TGAGAACCTTGCATAGGGTGTGAATATGGGAAATGTTGATCTGACTTCTGAGTTTCCATCACCTTTGCTCTACACGGTAGCATTTCCAATCAAACTGATGTTCACAGTTCTATTTCTTGCAGCAAACTGCTTGGCTACAGGGTTTGTACAA--------TTTCTC--T-----TTTTTTTCCCTC-AACACAGCACTTTCCCAGTTCATGTAAACTCCGTG-TTAATTA-TTTTGGCTGTTAGCTGAGAAAGAAGAAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642556 261 - 6883506 TATCCGTACC---TCTCACCTCGTGAGATACCA-AGGGAACCTAGCACAAG-TGTGAATATGGAAAGTGTTCAAATGATTTCCAAGTCTCAGTCACTTTA-TTCCACACAGCAACATTTCCAATCAAACTGATGCTCACAGTTCTATTTCTGGCAGCAAACCGCTTGGC-ACAGGGTTTGTAAAA--------TTTCTC--------TTTTTT---CTC-AACACAGCGCTTTCTCAGTACATGTAAATTCTG---TTAATTT-TTTTGGCTGTTAGCTGAGAAAGAAGAAA i dasNov3.JH568778 C 0 M 65 a score=1202073.000000 s hg38.chr21_GL383578v2_alt 42143 69 + 63917 AGCTCACATTTGCTAAATCCAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA s panTro5.chr21 879641 69 + 33445071 AGCTCAGATTTGCTAAATCCAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564291 69 + 46275980 AGCTCACATTTGCTAAATCCAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476402 69 - 13858734 AGCTCACATTTGCTAAATCCAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598586 69 + 32716333 AGCTCACATTTGCTAAATCCAGAATGACAGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTATA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671138 69 - 185818997 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479212 69 - 192294377 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924039 69 + 9440265 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663344 69 + 21915920 AGCTCACATTTGCTAAATCGAGAATGAGGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTAGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12307788 69 - 90373283 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635686 69 + 1337817 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTAGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614610 69 - 3237654 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTGTACA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146356 69 + 50472720 AGCTCACATTTGCTAAATCAAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2494938 69 + 13128814 AGCTCACATTTGCTAAATCAAGAATGACGAAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032489 69 - 14377064 AGCTCACATTTGCTAAATCAAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080178 69 + 9889416 AGCTCACATTTGCTAAATCGAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCTCAACAAAGTGGTTTACA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848495 69 + 47401472 AGCTCACATTTGCTAAATCAAGAATGATGGAGTGGATTCAAAAGTG----------------CTCTCCCCCCAAAGAGGTTTACA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1224156 69 - 2312742 AGCTCACATTTGCTAAATCAAGAATGACGGAGTGGATTCAGAAGTG----------------CTCTCCCTACAAAGAGGTTTACA i proCoq1.NW_012147997v1 C 0 C 0 s otoGar3.GL873528 18332049 69 - 38779656 CTCTCACATTTGCTAAATCAAGAATGACGGAGTGGAATCAGAAGTG----------------CTCTCCCTACAAAGCAGTTTACA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831719 85 + 98207768 AGCTCACATTTGCTAAATAAAGAATGACAGAGTGGATTTAGAAGTGctctctctctctcactctctctctcCAAAGTGGTTTGCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11447623 69 + 39895921 AGCTCACATTTGCTAAATCAAGAATGAAGAAGTGGATTCAGAAGTG----------------TTCTCTCTACAAAATGGTTTATA i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 642817 65 - 6883506 M a score=391923.000000 s hg38.chr21_GL383578v2_alt 42212 25 + 63917 CTCTGGAGCTAATGCAAACTCTCTT-- s panTro5.chr21 879710 25 + 33445071 CTCTGGAGTTAATGCAAACTCTCTT-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564360 25 + 46275980 CTCTGGAGTTAATGCAAACTCTCTT-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476471 25 - 13858734 CTCTGGAGCTAATGCAGACTCTCTT-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598655 25 + 32716333 CTCTGGAGCTAATGCAGACTCTGTT-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671207 25 - 185818997 CTCTGGAGCTAAGGCAGACTCTCTT-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479281 25 - 192294377 CTCTGGAGCTAAGGCAGACTCTCTT-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924108 25 + 9440265 CTCTGGAGCTAAGGCAGACTCTCTT-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663413 25 + 21915920 CTCTGGAGCTAAGGCAGActctctt-- i cerAty1.NW_012002954v1 C 0 I 12 s chlSab2.chr2 12307857 25 - 90373283 CTCTGGAGCTAAGGCAGACTCTCTT-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635755 25 + 1337817 CTCTGGAGCTAAGGCAGACTCTCTT-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614679 25 - 3237654 CTCTGGAGCTAAGGCAGACTCTGTT-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146425 25 + 50472720 CTCTGGAGATAATGCAGACTCTCTT-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495007 25 + 13128814 CTCTGGAGATAATGCAGACTCTCTT-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032558 25 - 14377064 CTCTGGAGATAATGCAGACTCTCTT-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080247 25 + 9889416 CTCTGGAGATAATGCAGACTCTCTT-- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848564 25 + 47401472 CTCAGCAGCTAATGCAGACTCTCTC-- i micMur3.chr31 C 0 I 2 s proCoq1.NW_012147997v1 1224225 24 - 2312742 TTCTGT-GCTAATGCAGACTCTCTC-- i proCoq1.NW_012147997v1 C 0 I 2 s otoGar3.GL873528 18332118 23 - 38779656 CTCTGCAGCTCACGC--ACTCTCTC-- i otoGar3.GL873528 C 0 I 2 s mm10.chr16 75831804 25 + 98207768 CTGTGGAACTAATGTAGACTTTCTC-- i mm10.chr16 C 0 I 4 s canFam3.chr31 11447692 25 + 39895921 CTCTGGAGCTAATGCAGACTCTCTT-- i canFam3.chr31 C 0 I 2 s dasNov3.JH568778 642883 27 - 6883506 NTCTAGAGCTAAGACAGACTTGCTCTT i dasNov3.JH568778 M 65 C 0 a score=179354.000000 s hg38.chr21_GL383578v2_alt 42237 12 + 63917 TGTTTCAATGTA s panTro5.chr21 879735 12 + 33445071 TGTTTCAATGTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564385 12 + 46275980 TGTTTCAATGTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476496 12 - 13858734 TGTTTCAATGTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598680 12 + 32716333 TGTTTCAATGTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671232 12 - 185818997 TGTTTCAATGTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479306 12 - 192294377 TGTTTCAATGTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924133 12 + 9440265 TGTTTCAATGTA i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12307882 12 - 90373283 TGTTTCAATGTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635780 12 + 1337817 TGTTTCAATGTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614704 12 - 3237654 TGTTTCAATGTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146450 12 + 50472720 TGCCTCAATGTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495032 12 + 13128814 TGCCTCAATGTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032583 12 - 14377064 TGCCTCAATGTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080272 12 + 9889416 TGCCTCAACGTA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848591 12 + 47401472 TGCTTCAATGTG i micMur3.chr31 I 2 C 0 s proCoq1.NW_012147997v1 1224251 12 - 2312742 TGCTTCATTGTG i proCoq1.NW_012147997v1 I 2 C 0 s otoGar3.GL873528 18332143 12 - 38779656 TGCTTCAGCGTG i otoGar3.GL873528 I 2 C 0 s mm10.chr16 75831833 12 + 98207768 TGCTTCTGTGTG i mm10.chr16 I 4 C 0 s canFam3.chr31 11447719 12 + 39895921 TGCTTCAATGTG i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 642910 12 - 6883506 TGCCTCAACATG i dasNov3.JH568778 C 0 C 0 e cerAty1.NW_012002954v1 5663438 12 + 21915920 I a score=1078070.000000 s hg38.chr21_GL383578v2_alt 42249 60 + 63917 TTGCTCGCAAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA s panTro5.chr21 879747 60 + 33445071 TTGCTCACAAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564397 60 + 46275980 TTGCTCACAAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476508 60 - 13858734 TTGCTCACAAATATCGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598692 60 + 32716333 TTGCTCACAAATATCGATTAATCATTTTTCTTTATTAGCGTATGCCCTCTTGGTGGTATA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671244 60 - 185818997 TTGCTCACCAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479318 60 - 192294377 TTGCTCACCAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924145 60 + 9440265 TTGTTCACCAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663450 60 + 21915920 ctgctcACCAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCCTCTCTCTCTC i cerAty1.NW_012002954v1 I 12 C 0 s chlSab2.chr2 12307894 60 - 90373283 TTGCTCACAAATATTGATTAATCATTTTTCTTTATTAGCCTATGCCCTCTTGGTGGTATA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635792 60 + 1337817 TTGTTCACCAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614716 60 - 3237654 TTGCTCACAAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCTTGGTGGTATA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146462 60 + 50472720 TGGCTCACAAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCATGGTGGTATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495044 60 + 13128814 TGGCTCACAAATATTGATTAATCATTTTTCTTTATTAGCTTATGCCCTCGTGGTGGTATA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032595 60 - 14377064 TGGCTCACAAATATCGATTAATCATTTTTCTTTATTAACTTATGCCTTCGTGGTGGTATA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080284 60 + 9889416 TGGCTCACAAATATCGATTAATCATTTTTCTTTATTAGCTTATGCCCTCGTGGTGGTATA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848603 60 + 47401472 TTGCTCACAAATATTGATTAATCATTTCTCTTTATTAGCTTATGTCCTCCCAGTGGTATA i micMur3.chr31 C 0 C 0 s proCoq1.NW_012147997v1 1224263 60 - 2312742 TTGCTCACAAATATCAATTAATCATTTCTCTTTATTAGCTTATGTCCTCCTGGTGGTATA i proCoq1.NW_012147997v1 C 0 N 0 s otoGar3.GL873528 18332155 60 - 38779656 TTGCTCACAAACACAGATTAATCATTCTTCTTTATTAGCTTAGGTCTTCTTGATGGTGTA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831845 60 + 98207768 CTGCTCACAGCTATCGATTAATCATTTTTCTTTATTAGCTAATGTCTTCTTGGTAGGATA i mm10.chr16 C 0 C 0 s canFam3.chr31 11447731 60 + 39895921 TTGCTCACAAATATCGATTAATCATTTTTCTTCATTAGCTTATGTCCTCTCAGTAGTATA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 642922 60 - 6883506 TTGCTTAAAGATATCGATTAATCATGTTTCTTTATTAGCTTATGTCCTTGTGGTAGTATA i dasNov3.JH568778 C 0 C 0 a score=2220299.000000 s hg38.chr21_GL383578v2_alt 42309 154 + 63917 ATGCATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGATATTATAAACCTGAGCTGACAC--T-TCAGCAAAAGGGTTCCAGAGGTTTCTAGAGATGGGGAAACAGATGATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AACGTTAGAGAGAGAGG s panTro5.chr21 879807 154 + 33445071 ATGCATTTGACTTCCCTTCTGTCTTCCAGGAGAGTGGGATATTATAAACCTGAGATGACAC--T-TCAGCAAAAGGGTTCCAGAGGTTTCTAGAGATGGGGAAACAGATGATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564457 154 + 46275980 ATGCATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGATATTATAAACCTGAGCTGACAC--T-TCAGCAAAAGGGTTCCAGAGGTTTCTAGAGATGGGGAAACAGATGATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476568 154 - 13858734 ATGCATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGATATTATAAACCTGGGCTGACAC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATGATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGACAGAGGGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598752 154 + 32716333 ATGCATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGATATTATAAACCTGGGCTGACAC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATGATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671304 154 - 185818997 ATACATTTGACTTTCCTTCTGTCTTCCAGGAGAGCGGGCTATTATAAACCTGGGCTGACGC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATAATTAATGTCAACCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479378 154 - 192294377 ATACATTTGACTTTCCTTCTGTCTTCCAGGAGAGCGGGCTATTATAAACCTGGGCTGACGC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATAATTAATGTCAACCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924205 154 + 9440265 ATACATTTGACTTTCCTTCTGTCTTCCAGGAGAGCGGGCTATTATAAACCTGGGCTGACGC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATAATTAATGTCAACCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663510 154 + 21915920 TCTCGTTTGACTTTCCTTCTGTCTTCCAGGAGAGCGGGCTATTATAAATCCTCTCTCTCTC--T-CTAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATAATTACTCTCTCTCTCTCTTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12307954 154 - 90373283 ATACATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGCTATTATAAACCTGGGCTGACGC--T-TCAGCAAAAGGATTCCAGAGGTTTCTACAGATGGGGAAACAGATAATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 635852 154 + 1337817 ATACGTTTGACTTTCCTTCTGTCTTCCAGGAGAGCGGGCTATTATAAACCTGGGCTGACGC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATAATTAATGTCAACCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614776 154 - 3237654 ATGCATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGCTATTATAAACCTGGGCTGACGC--T-TCAGCAAAAGGATTCCAGAGGTTTCTAGAGATGGGGAAACAGATAATTAATGTCAACCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146522 151 + 50472720 ATGCATTTGACTTTC-TTCTGTCTTCCAG--GAGTGGGATATTATAAACCTGGGCTGACAC--T-TCAGCAAAAGGATTCCAGAGGTGTCTAGAGATAGGGAAACAGATAATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495104 151 + 13128814 ATGCATTTGACTTTC-TTCTGTCTTCCAG--GAGTGGGATATTATAAACCTGGGCTGACAC--T-TCAGCAAAAGGATTCCAGAGGTGTCTAGAGATAGGGAAACAGATAATTAATGTCAGTCTCCTCTAAT-AAAAA-ATA--AATGTTAGAGGGAGGGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032655 151 - 14377064 ATGCATTTGACTTTC-TTCTGTCTTCCAG--GAGTGGGATGTTATAAACCTGGACTGACAC--T-TCAGCAAAAGGATTCCAGAGGTGTCTAGAGATAGGGAAACAGATAATTAATGTCAGTCTTCTCTAAT-AAAAA-ATA--AATGTTAGAGAGAGGGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080344 151 + 9889416 ATGCATTTGACTTTC--TCTGTCTTCCAG--GAGTGGGATATTATAAACCTGGGCTGACAC--T-TCAGCAAAAGGATTCCAGAGGTGTCTAGAGATAGGGAAACAGATAATTAATGTCAGTCTCCTCTAATAAAAAA-ATA--AATGTTAGAGAGAGGGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848663 155 + 47401472 ATGCATTTGACTTTCCTTCTGTCTTCCAGGAGAGTGGGGTGTTATAAACCTGGGCTGATAA--TGTCAGCAAAAGGATTCCAGAGACTTCTAGAGGTGGGGAAAGAGATAATTAATGTCAGTCTCCTGTACT-AAAAA-GTA--AACGTTAGAGAGGGTGG i micMur3.chr31 C 0 I 47 s otoGar3.GL873528 18332215 152 - 38779656 ATGCATTTGACTTTCCCTCTATCTTCCAAGAGAGGAGAGTGTTATAAACCTGGGCTGATAG--TGTCAGCAAAAGGATTCCAGAGATTTTGAGAGGTGGAGAGAGAGAAAATTAGTGTCAGTCTCCTCTACT-AAAA----A--AAGGTTAGAGAGAGAGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75831905 111 + 98207768 ATGTGTTTGACTTTCCTTCTGGCTGT--GGAGAGCGTGATGCTATAAACT-----TGACAC--TGTCGACAAAAGGATTTGAGAGAT--------------------------------AATTTCTTCTACT-AAAAA-ATA--AATGTTAAAAGG----- i mm10.chr16 C 0 I 2 s canFam3.chr31 11447791 154 + 39895921 ATGCATTTGACT---CTTCTGTCTTCCAGAAGAGTGGGTTGCTATAAACTCAAGCTGACAC--TATCAGCAAAAGGACTCTAGCAGTTTCTAGCAGTGGGAAAATAGATAATTAATGCTCATCTCCTCTACT-AAAAG-ATATCAGTGTTAGAGGGGGTAG i canFam3.chr31 C 0 I 4 s dasNov3.JH568778 642982 157 - 6883506 ATGTATTTGATTTTCCTTCTGTCTTCCAGGAGAGTGGGATGCTATAAACCTGGGCTGACACCAT-TCAGTCAAAGGATTCTAGGGGTATCTAGCAGTAGGGAAATGCATAATTAATGTCAATCTCCTCTAAT-GAAAATAGA--AATGTTAGAGAGTGGTA i dasNov3.JH568778 C 0 C 0 a score=508332.000000 s hg38.chr21_GL383578v2_alt 42463 48 + 63917 GTGTGTTTTTTC-TTACGTCCTT---------TAAAACCTTGTGCTATGAGTATG----CGA- s panTro5.chr21 879961 47 + 33445071 GTGTGTTTTTCC-T-ACGTCCTT---------TAAAACCTTGTGCTATGAGTATG----TGA- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564611 47 + 46275980 GTGTGTTTTTCC-T-ACGTCCTT---------TAAAACCTTGTGCTATGAGTATG----CGA- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476722 47 - 13858734 GTGTGTTTTTCT-T-CCGTCCTT---------TAAAACCTTGTGCTATGAGTATG----CGA- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598906 47 + 32716333 GTGTGTTTTTCT-C-ATGTCCTT---------TAAAACCTTGTGCTATGAGTATG----TGA- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671458 47 - 185818997 GTGTGTTTTTCT-C-ACGTTCCT---------TAAAACCTTGTGCTCTGAGTATG----TGA- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479532 47 - 192294377 GTGTGTTTTTCT-C-ACGTCCCT---------TAAAACCTTGTGCTCTGAGTATG----TGA- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924359 47 + 9440265 GTGTGTTTTTCT-C-ACGTCCCT---------TAAAACCTTGTGCTCTGAGTATG----TGA- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663664 47 + 21915920 GTGTGTTTTTCT-C-ACGTCCTC---------TCTCTCTCTCTGCTCTGAGTATG----TGA- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308108 47 - 90373283 GTGTGTTTTTCT-C-ACGTCCTT---------TAAAACCTTGTGCTCTGAGTATG----TGA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636006 47 + 1337817 GTGTGTTTTTCT-C-ACGTCCCT---------TAAAACCTTGTGCTCTGAGTATG----TGA- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614930 47 - 3237654 GTGTGTTTTTCT-C-ACGTCCTT---------TAAAACCTTGTGCTATGAGTATG----TGA- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146673 47 + 50472720 GTGTGTTTTTCT-C-ACGTCCTT---------TAAAACCTTGGGCTTTGAGTATG----TGA- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495255 47 + 13128814 GTATGTTTTTCT-C-ACGTCCTT---------TAAAACCTTGTGCTATGAGTCTG----TGA- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032806 47 - 14377064 TTGTGTTTTTCT-C-ACGTCCTT---------TAAAACCTTGTACTATGAGTATG----TGA- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080495 47 + 9889416 GTGTGTTTTTCT-C-ACGTCCTT---------TAAAACCTTGTGCTATGAGTATG----TGA- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18332367 48 - 38779656 GTGCCCCCTCCCAC-ATATCCTT---------CAAAATCTTATGCTGTGAGTATG----TGA- i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75832018 60 + 98207768 ATGCTTTTCCTT-C-ATGCCATTCTCAACCACTTCAACCATGTGCTTGCTTTATGTCCCTGA- i mm10.chr16 I 2 I 1 s canFam3.chr31 11447949 43 + 39895921 TTTTTTTTTTTT-C-ATAACCTA---------CAAGACTTTGTGTT----GTATG----TGG- i canFam3.chr31 I 4 I 1 s dasNov3.JH568778 643139 48 - 6883506 GTGTTTTTTTCC-C-ATACTCTA---------TAAAAGCTTATTAGGTGTGCACA----AGGC i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16848818 47 + 47401472 I a score=1220325.000000 s hg38.chr21_GL383578v2_alt 42511 103 + 63917 CAGTAGTGAGGCAGAAGACACTATGGTGAAA-----TCATTCAGTTCAGGAGGCTCATTCTTC-TATTAATTCCACAGTGCTTCCTGGACACAGTTTTC------------------------------------------TGTGCCTTTT s panTro5.chr21 880008 103 + 33445071 CAGTAGCGAGGCAGAAGACACTATGGTGAAA-----TCATTCAGTTCAGGAGGCTCATTCTTC-TATTAATTCCACAGTGCTTCCTGGACACAGTTTTC------------------------------------------TGTGCCTTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564658 103 + 46275980 CAGTAGTGAGGCAGAAGACACTATGGTGAAA-----TCATTCAGTTCAGGAGGCTCATTCTTC-TATTAATTCCACAGTGCTTCCTGGACACAGTTTTC------------------------------------------TGTGCCTTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476769 108 - 13858734 CAGTAGCGAGGCAGAAGACACTATGGTGAAATCATTTCATTCAGGTCAGGAGGCTCATTCTTC-TATTAATTCCACAGTGCTTCCTGGACACAGTTTTC------------------------------------------TGTGCCTTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1598953 103 + 32716333 CAGTAGCGAGGCAGAAGACACTGTGGTGAAA-----TCATTCAGTTCAGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACGCAGTTTTC------------------------------------------TGTGCCTTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671505 96 - 185818997 CAGTAACGAGGCAGAAGACACTGCGGTGAAA-----TCGTTCAGTCCAGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACA-------C------------------------------------------TGTGGCTGTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479579 96 - 192294377 CAGTAACGAGGCAGAAGACACTGCGGTGAAA-----TCGTTCAGTCCAGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACA-------C------------------------------------------TGTGGCTGTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924406 96 + 9440265 CAGTAGCGAGGCAGAAGACACTGCGGTGAAA-----TCGTTCAGTCCAGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACA-------C------------------------------------------TGTGGCTGTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663711 96 + 21915920 CAGTAGCGAGGCAGAAGACACTGCGGTGAAA-----TCGTTCAGTCCAGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACA-------C------------------------------------------TGTGGCTTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308155 96 - 90373283 CAGTAGCGAGGCAGAAGACACTGCGGTGAAA-----TCATTCAGTCCAGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACG-------C------------------------------------------TGTGGCTTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636053 96 + 1337817 CAGTAGCGAGGCAGAAGACAGTGCGGTGAAA-----TCGTTCAGTCCGGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACA-------C------------------------------------------TGTGGCTTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 614977 103 - 3237654 CAGTAGCGAGGCAGAAGACACTGCGGTGAAA-----TCGTTCAGTCTGGGAGGCTCATTCTTC-TGTTAATTCCACAGTGCTTCCTAGACACAGTTTTC------------------------------------------TGTGCCTTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146720 102 + 50472720 CAGTGGTGAGGCAGAAGACACTGCGGTGAAA-----TCATTCAGATCAGG-GGTTCATTCTTC-TGTTAATTCCACAGTGCTTCCTGAACACAGTTTTC------------------------------------------TGTGCCTTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495302 103 + 13128814 CAGTGGAGAGGCAGAAGACACTGCAATGAGA-----TCATTCAGTTCAGGAGGCTCATTCTTC-TGTTAATTCCACGGTGCTTCCTGGATACAATTTTC------------------------------------------TGTGCCTTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032853 103 - 14377064 CAGTGGTAAGGCAGAAGACACTGCGGTGAAA-----TCATTCAGTTCAGGAGATTCATTCTTC-TCTTAATTCCACGGTGCTTCCTGGACACAGTTTTC------------------------------------------TGTGTCTTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080542 103 + 9889416 CAGTGGTGAGGCAGAAGACACTGCGGTGAAA-----TCATTCAGTTCAGGAGGTTCATTCTTC-TCTTAATTCCACAGTGCTTCCTGGACACAGTTTTC------------------------------------------TGTGGCTTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16848865 103 + 47401472 CCATAGTGAGGCAGAAGACACTGTGGTGAAA-----TCATTCAGTTCAAGAGTCTAACCCTTG-TTTTAGCTCCACAGTATTTCCTAGACACAGTTTTC------------------------------------------TGTGCCTTTT i micMur3.chr31 I 47 I 87 s otoGar3.GL873528 18332416 100 - 38779656 GGGTTGTGAGACAGAAGATGC-GCACTGAAA-----TTATTCAGTTCGCGAGCCTGTTCCTTC-TGTTAGCGCCACAATACTTCCTAG--AGAGATTTC------------------------------------------TGGGCCTTTT i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75832079 140 + 98207768 CCACTGTAAGGAACAAGACACT--GATGGTA-----TCACGCTATTT--GATGCGAATTGTT--TGGTAGTTCTATGGTGCTCCCAGGATATACTtttcttttcttccctttttctttctttctccttctttctttttttgtttggttttt i mm10.chr16 I 1 I 4 s canFam3.chr31 11447993 96 + 39895921 CTGTAGTGAGAGTGA--------TAGTGAAA-----TCATTCACTTCAAGATTCTAATCCTTTAAGTTAGTTCCACACTGTTCCCTAGACAAAATTTTC------------------------------------------TGTGCCCTTA i canFam3.chr31 I 1 C 0 s dasNov3.JH568778 643187 93 - 6883506 CTGTAGTGAGGTGGA-GAAACAGTGGTGATA-----CCATTCAGTTCCATA---------TTC-TGTTAGTTCCACTCTGATCTCTAGACTTAGTTTTC------------------------------------------TGTGCCTGTT i dasNov3.JH568778 C 0 C 0 a score=798315.000000 s hg38.chr21_GL383578v2_alt 42614 67 + 63917 AAAGAAGGGCCAGAGGCCTATTCTAAAACC-TGTATGGCTGTCAAATAAATATCACTGTGCCGGCAAA s panTro5.chr21 880111 67 + 33445071 AAAGAAGGGCCAGAGGCCTATTCTAAAACC-TGTATGGCTGTCAAATAAATATCACTGTGCCAGCAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564761 67 + 46275980 AAAGAAGGGCCAGAGGCCTATTCTAAAACC-TGTATGGCTGTCAAATAAATATCACTGTGCCGGCAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476877 67 - 13858734 AAAGAAGGGCCAGAGGCCTATTCTAAAACC-TGTATGGCTGTCAAATAAATATCAGTGTGCCGGCAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599056 67 + 32716333 AAAGAAGGACCAGAGGCCTGTTCTAAGACC-TGTATGGCTGTCAAGTAAGTATCAGTGTGCCGGCAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671601 67 - 185818997 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAATAGCAGTGTCCCGGCAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479675 67 - 192294377 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAATAGCAGTGTCCCGGCAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924502 67 + 9440265 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAATAGCAGTGTCCCGGCAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663807 67 + 21915920 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAATAGCAGAGTGCCGGCAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308251 67 - 90373283 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGACTGTCAAATAAATAGCAGTGTGCCGGCAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636149 67 + 1337817 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAATAGCAGTGTGCCGGCAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615080 67 - 3237654 AAAGAAGGGCCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAACATCAGTGTGCCGGCAAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146822 67 + 50472720 AAAGAAGGGTCAGAGGCCTATTCTAAGACC-TGTATGGCTGTCAAATAAATATCAGTGTTCCGGTAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495405 67 + 13128814 AAAGAAGGGTCAGAGGCCGATTCTAAGACT-TGTATGGCTGTCAAATAAATATCAGTGTGCTGGCAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7032956 67 - 14377064 AAAGATGGGTCAGAGGCCTATTCTAAGACCTTGTATGGCTGTCAAATAAATATCAGCGTGCCGGC-AA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080645 67 + 9889416 AAAAAAGAGTCAGAGGCCTATTCTAAGACC-TTTATGGCTGTCAAATAAATATCAGTATGCTGGCAAA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18332516 55 - 38779656 AAAGGAGAGC------------TTAAGACT-TGCGTAGCTGTCAGAGAAATATCAATGGATGGGGAAA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75832223 66 + 98207768 cAAGAAGGCACAGAGGCCCATTCTAAAACC-TGTGCGATAGCCAGAGATCT-TCAACATTACATGGAA i mm10.chr16 I 4 C 0 s canFam3.chr31 11448089 65 + 39895921 AAAGAAGGACCAGAGGCCAATTCTAAGGCA-TACACAGCTGTTAGAAAAATA--AGTGTCTAGGCAAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 643280 57 - 6883506 AAAGAAAGATGAG----TTAATTTAAGACT-TGTATAGCTCTAAGAGAAGTA------TTTAGGCAAA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16848968 87 + 47401472 I a score=538587.000000 s hg38.chr21_GL383578v2_alt 42681 38 + 63917 AGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC s panTro5.chr21 880178 38 + 33445071 AGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTGCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564828 38 + 46275980 AGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476944 38 - 13858734 AGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599123 38 + 32716333 AGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671668 38 - 185818997 GGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479742 38 - 192294377 GGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924569 38 + 9440265 GGAGAGATTCTGGTTGAGGCCTTTCCCTCTTAACTACC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663874 38 + 21915920 GGAGAGGTTCTGGTTGAAGCCTTTCCCTCTTAACTACC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308318 38 - 90373283 GGAGAGATTCTGGTTGAGGCCTTTGCCTCTTAACTACC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636216 38 + 1337817 GGAGAGATTCTGGTTGAGGCCTTTGCCTCTTAACTACC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615147 38 - 3237654 GGAGAAATTCTGGTTGAGGCCTTTCTCTCTTAACTACC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146889 38 + 50472720 GGAGAAATTCTAGTTGAGGCCTTTCCCTCTTAACTACC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495472 38 + 13128814 GGAGAGATTCTAGTTGAGGCCTTTCCCTCTTAACTACC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033023 38 - 14377064 GGAGAGATTCTAGTTGAGGCCTTTCCCTCTTAACTACC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080712 38 + 9889416 GGAGAGATTCTAGTTGAGGCCTTTCCCTCTTAACTACC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849055 37 + 47401472 AAAGAGATTCTGGTTGAGGTCTTTCCCTC-TAACTACC i micMur3.chr31 I 87 C 0 s otoGar3.GL873528 18332571 37 - 38779656 GGAGGGGTTCTGGCTGAGCTCATTCCCTC-TAACTGCC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75832289 23 + 98207768 --GGAAATACTGGTCAAG------------TAACTAT- i mm10.chr16 C 0 C 0 s canFam3.chr31 11448154 37 + 39895921 GGAGAGACTCTACATGAGCTCTTCCCCTC-TAACTACC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 643337 37 - 6883506 AGAGAGAATCTGATCGCAAGCTTCACTTC-TAACTACC i dasNov3.JH568778 C 0 I 2345 a score=3338269.000000 s hg38.chr21_GL383578v2_alt 42719 267 + 63917 TAAGGACTGTAT----ATTTTTAGGTA-CAAAGGAAAGA--ATTAAGCTGCCT--------TTT-GTGTCCCAGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAACT--TTTA----------GTTTACACATAAAAGGGGTG--CTTCACACACAGGACAAGGAAATGGGAAGTTATAAGGACCCCGGACATTAtctccctgtacatctgtttt---cttct-------caagctggtttttatcactcagtcaacaccatgg-ggaagatagccacttcaca s panTro5.chr21 880216 267 + 33445071 TAAGGACTGTCT----ATTTTTAGGTG-CAAAGGAAAGA--ATTAAGCTGCCT--------TTT-GTGTCCCAGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAACT--TTTA----------GTTTACACATAAAAGGGGTG--CTTCACACACAGGACAAGGAAATGGGAAGTTATAAGGACCCCAGACATTATCTCCCTGTACATTTGTTTT---CTTCT-------CAAGCTGGTTTTTATCACTCAGTCAACACCATGG-GGAAGACAGCCACTTCACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14564866 267 + 46275980 TAAGGACTGTCT----ATTTTTAGGTG-CAAAGGAAAGA--ATTAAGCTGCCT--------TTT-GTGTCCCAGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAACT--TTTA----------GTTTACACATAAAAGGGGTG--CTTCACACACAGGACAAGGAAATGGGAAGTTATAAGGACCCCAGACATTATCTCCCTGTACATCTGTTTT---CTTCT-------CAAGCTGGTTTTTATCACTCAGTCAACACCATGG-GGAAGACAGCCACTTCACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 476982 267 - 13858734 TAAGGACTGCAT----ATTTTTAGGTG-CAAAGGAAAGA--ATTAAGCTGCCT--------TTT-GTGTCCCAGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAAGT--TTTA----------GTTTACACATAAAAGGGGTG--CTTCACACACAGGACAAGGAAATGGGAAGTTATAAGGACCCCAGACATTATCTCCCTGTACATCTGTTTT---CTTCT-------CAAGCTCGTTTTTATCACTCAGTCAACACCATGG-GGAAGATAGCCACTTCACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599161 276 + 32716333 TAAGGACTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--ATTAAGCTGCCT--------TTT-GTGTCCCAGTTGATAAGCA-CAGACTTAACAGTCAG----AAGTCTCTGGCTCTAAGCATGAAA----AGAAACTGAGTTA----------GTTTACACATAAAAGGGGTG--CTTCACACACAGGACCAGGAACTGGGAAGTTATAAGGACCCCAAACATTAtctccctgtgcatctgtttt---cttctcacgttgcaagctggttcttatcactcagtcaacaccatgg-ggaagatagccacttcaca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671706 270 - 185818997 TAAGGAGTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--ATGAAGCTACCT--------TTT-GTGTGCCGGTTGATAAGCA-TAGTCTTATC----------AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GGTTACACATAAAAGGGGTG--CTTCCCACACAGGGCCAGGAACTGGGAAGTTATAAGGACCCCAAACATTAtctctctgtacatctgtttt---cttctcatgttgcaagctggtttttatcactcagtcaacaccaggg-ggatgatagccacttcaca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159479780 270 - 192294377 TAAGGAGTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--ATGAAGCTACCT--------TTT-GTGTGCCGGTTGATAAGCA-TAGTCTTATC----------AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GGTTACACATAAAAGGGGTG--CTTCCCACACAGGGCCAGGAACTGGGAAGTTATAAGGACCCCAAACATTATCTCTCTGTACATCTGTTTT---CTTCTCATGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCAGGG-GGATGATAGCCACTTCACA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924607 270 + 9440265 TAAGGAGTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--ATGAAGCTACCT--------TTT-GTGTGCCGGTTGATAAGCA-TAGTCTTATC----------AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GGTTACACATAAAAGGGGTG--CTTCCCACACAGGGCCAGGAACTGGGAAGTTATAAGGACCCCAAACATTAtctccctgtacatctgtttt---cttctcatgttgcaagctggtttttatcactcagtcaacaccaggg-ggatgatagccacttcaca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5663912 276 + 21915920 TAAGGAGTGTAT----ATCTCTCTCTC-TCTCTGAAAGA--AGGAAGCTACCT--------TTT-GTGTGCCGGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GTTTACACATAAAAGGGGTG--CTTCCCACACAGGACCAGGAACTGGGAAGTTATAAGGACCCCATACATTATCTCCCTGTACATCTGTTTT---CTTCTCATGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCAGGG-GGAAGATAGCCACTTCACA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308356 276 - 90373283 TAAGGAGTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--ATGAAGCTGCCT--------TTT-GTGTGCTGGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GTTTACACATAAAAGGGGTG--CTTCCCACACAGGACCAGGAACTGGGAAGTTATAAGGACCCCAAACATTATCTCCCTGTACATCTGTTTT---CTTCTCATGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCAGGG-GGATGATAGCCACTTCACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636254 276 + 1337817 TAAGGAGTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--AGGAAGCTACCT--------TTT-GTGTGCCAGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GTTTACACATAAAAGGGGTG--CTTCCCACACAGGACCAGGAATTGGGAAGTTATAAGGACCCCATACATTATCTCCCTGTACATCTGTTTT---CTTCTCATGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCAGGG-GGATGATAGCCACTTCACA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615185 276 - 3237654 TAAGGAGTGTAT----ATTTTTAGGGG-CAAAGGAAAGA--ATTAAGCTGCCT--------TTT-GTGTGCCAGTTGATAAGCA-TAGTCTTAACAGTCAG----AACTCTCTGACTGTAAGCATGAAA----AGAAACCGAGTTA----------GTTTTCACATAAAAGGGGTG--CTTCCCACACAGGACCAGGAACTGGGAAGTTATAAGGACCCCAAACATTATCTGCCTGTACATCTGTTTT---CTTCTCACGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCAGGG-GGAAGATAGCCACTTCACA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19146927 278 + 50472720 TAAGAAGTGTGT----ATTTTTAGGTG-CAAAGGAAAGA--ATTCAGCTGCCT--------TTT-GTGTCCCCGTTGATAAGCA-TAGTCTTAATAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAACTGAGTTA----------GTTAACACATAAAAGGGGTGCTCTTCACACATAGGACTGGGACATGGGAAGTTATAAGGACCCCAAACATTATCTCTCTGTACATAGGTTTT---CTTCTCATGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCATGG-GAAAGAGAGCCACTTTGCA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495510 276 + 13128814 TAAGAAGTGTGT----ATTTTTAGGTG-CAAAGGAAAGA--ATTCAGCTGCCT--------TTT-GTGTTCCCGTTGATAAGCA-TACTCTTAATAGTCAG----AACTCTCTGGCTTTAAGCATGAAA----AGAAACTGAGTTA----------GTTGACACATAAAAGGGGTG--CTTCACACACAGGACCGGGAACTGGGAAGTTGTAAGGACCCCAAACATTAtctctctgtacataggtttt---cttctcatgttgtaagctggtttttatcactcagtcaacaccacag-ggaagagagccacttcaca i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033061 276 - 14377064 TAAGAAGTGTAT----ATTTTTAGGTG-CAAAGGAAAGA--GTTCAGCTGCCT--------TTT-GTGTCCCCGTCGATAAGCA-TACTCTTAATAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAACTGAGTTA----------GTTGACACATAAAAGGGGTG--CTTCACACATAGGACTGGGAACTGGGAAGTTGTAAGGACCCCAAACATTATCTTTCTGTACATAGATTTT---CTTCTCATGTTGCAAGCTGGTTTTTATCACTCAGTCAACACCATGG-GGAAGAGAGCCACTTCACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6080750 271 + 9889416 TAAGAAGTGTGT----ATTTTTAGGTG-CAAAGGAAAGA--ATTCAGCTGCCT--------TTT-GTGTCCCCGTTGATAAGCA-TAGTCTTAATAGTCAG----AACTCTCTGGCTCTAAGCATGAAA----AGAAACTGAGTTA----------GTTGACACATAAAAGGAGTG--CTTCACACATAGGACCAGGAACTGGGAAGTTATAAGGACCCCAAACATTATCTCTCTGTACATAGATTT--------TCATGTTGCAAGCTGGTTTTTATCACTCGGTCAACACcatgg-ggaagaaagccacttcaca i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849092 280 + 47401472 TAAGGACTGTGT----ATTTTTAGGTG-CAAAGGAAAGAATATTAAGCTGCCTTTTTTTTTTTA-ATGTCCCAGTTGATAAGCA-TAGTTTTAACAGTCAG----AACTCTCTGGCTCTAAGTGTGAAC----AGAAATTGAGTTA----------GTTTATACATAAAAGG--TG--CTTCAC----AGGACCAAGAACTGAGGCATTACAAGGACTCCGGACACTATCTGTCTTTGCATCAGTTTT---CTTCTCATGTCCCACACTGGCGTTTGTTACTCAGTTAACACCATGG-GGAACATAGTCACCTCACA i micMur3.chr31 C 0 I 3 s otoGar3.GL873528 18332608 265 - 38779656 TGAAGGGTGTGT----AGTTTTAGTTA-CAAAAGAGAGA--AGTAAACTGCCT--------------------GTTCATAAGTA-TAGTTTTAACAG-------------GGTGGCTGTAAGCAAGAAA----AGAAATTGAGTTAACTGATACATGTTCATACATACCAGGGCTA--CTGCCC----AGGACTAGGAGCTGAGAGGGGGCAAGGACTCTGGACGTCCCCTCTTTCTGCTCCCACTTTCCCCTTCTCATCTTGTACACTGGCTTCTATTACTTAGTCAACATTAAGG-GGAAGGCAGTCACCTCACA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75832312 194 + 98207768 ------GTGTATAATAACTTTTAGTTG-AAAATGAAAGA--ATTAATCTGCCT-------TTTT-GAGGTAGAATTGAAAATCA-CACTTTTATTAT-----------------------AGCACAATAGTTGAAGAACT---TTA----------GATTATATGTAAAAATGTAG--ATACCC----AGGACTAGGAAATGAGAAATTTGAGCATCCCCAATTGTTACCCACCTGTGTGCCCATTTC---TT----------------------------------------AAGG-------------------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11448191 271 + 39895921 TAAGGAATGTGT----A--TTTAGGTG-CAAAGAAGGGA--ATTAAGCTGTCT--------TTTAAGGTCCAAGTTGGTAAGCATTAGCTTTAATAGTCAG----AACTCTCTGGCTCCAAATATGAAA----AGAAATTGAGTTA----------CTTTACGCATATAAGAGGTG--CT-----CTCAGGGCTAGGAACTGAGATCTTATAAGGGCTGAGGACATTATCTCCTTGTACATCTATTT----CTTCTCATGTTGCACACTGGCTTTTGTTATTCAGTCAGCACCATGGGGGAAGATAGACACTTCCCA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 645719 256 - 6883506 TAAAGAATGTGT----ATTTTTAAGGGTCAAACGAGAGA--ATTAAG--------------TTT-GCATCCCAATTGTCATGCT-TAGT-TTAACAGCCTGAACAAACACTCTGTTTCCAAGTATGAAA----ACGCGTTGAATTA----------GTTTACACATAAAAGGGGTG--CTTCAT----ATGATCATGAGCTGAGCAGTCATAATAAC----AGAATTATCTCCCTGTG-------------CTTCTTCCATTGCACACTGGCTTTTGTTATTCAGTCAACAATGTGG-GGAAGATAACCATCTCATA i dasNov3.JH568778 I 2345 C 0 a score=12292.000000 s hg38.chr21_GL383578v2_alt 42986 1 + 63917 g s panTro5.chr21 880483 1 + 33445071 G i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565133 1 + 46275980 G i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477249 1 - 13858734 G i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599437 1 + 32716333 g i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671976 1 - 185818997 g i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480050 1 - 192294377 G i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924877 1 + 9440265 g i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664188 1 + 21915920 G i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308632 1 - 90373283 G i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636530 1 + 1337817 G i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615461 1 - 3237654 G i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147205 1 + 50472720 G i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495786 1 + 13128814 g i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033337 1 - 14377064 A i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081021 1 + 9889416 g i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18332873 1 - 38779656 A i otoGar3.GL873528 C 0 I 315 s mm10.chr16 75832506 1 + 98207768 A i mm10.chr16 C 0 C 0 s canFam3.chr31 11448462 1 + 39895921 G i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 645975 1 - 6883506 G i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16849372 3 + 47401472 I a score=139498.000000 s hg38.chr21_GL383578v2_alt 42987 13 + 63917 gccttgagatctc-- s panTro5.chr21 880484 13 + 33445071 GCCTTGAGATCTC-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565134 13 + 46275980 GCCTTGAGATCTC-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477250 13 - 13858734 GCCTTGAGATCTC-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599438 13 + 32716333 gccttgagatccc-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671977 13 - 185818997 gccttgagatccc-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480051 13 - 192294377 GCCTTGAGATCCC-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924878 13 + 9440265 gccttgagatccc-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664189 13 + 21915920 GCCTTGAGATCCC-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308633 13 - 90373283 GCCTTGAGATCCC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636531 13 + 1337817 GCCTTGAGATCCC-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615462 13 - 3237654 GCCTTGAGATCCC-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147206 13 + 50472720 GCCTTGAGATCCC-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495787 13 + 13128814 gccttgagatccc-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033338 13 - 14377064 GCCTTGAGATCCC-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081022 13 + 9889416 gccttgagatccc-- i aotNan1.NW_018487195v1 C 0 C 0 s mm10.chr16 75832507 12 + 98207768 ATCTCGAGGGCT--- i mm10.chr16 C 0 C 0 s canFam3.chr31 11448463 13 + 39895921 CTCCTAGGATCAT-- i canFam3.chr31 C 0 I 2 s dasNov3.JH568778 645976 15 - 6883506 CTCCTGAGAGGACAC i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16849372 3 + 47401472 I e otoGar3.GL873528 18332874 315 - 38779656 I a score=150612.000000 s hg38.chr21_GL383578v2_alt 43000 11 + 63917 tatcttatttt s panTro5.chr21 880497 11 + 33445071 TATCTTATTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565147 11 + 46275980 TATCTTATTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477263 11 - 13858734 TATCTTATTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599451 11 + 32716333 tatcttatttt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152671990 11 - 185818997 tatcttatttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480064 11 - 192294377 TATCTTATTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924891 11 + 9440265 tatcttatttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664202 11 + 21915920 TATCTTATTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308646 11 - 90373283 TATCTTATTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636544 11 + 1337817 TATCTTATTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615475 11 - 3237654 TATCTTATTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147219 11 + 50472720 TATCTTATTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495800 11 + 13128814 tatcttatttc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033351 11 - 14377064 TATCTTATTTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081035 11 + 9889416 tatcttatttc i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849375 11 + 47401472 TGTTTTATTTC i micMur3.chr31 I 3 C 0 s canFam3.chr31 11448478 11 + 39895921 TGTCTTATTTC i canFam3.chr31 I 2 I 6 s dasNov3.JH568778 645991 11 - 6883506 TGTCTAATTTC i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75832519 0 + 98207768 C e otoGar3.GL873528 18332874 315 - 38779656 I a score=580557.000000 s hg38.chr21_GL383578v2_alt 43011 44 + 63917 aggaaaacggagcatactaaaccaagggcgtttccctctcagtt s panTro5.chr21 880508 44 + 33445071 AGGAAAACGGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565158 44 + 46275980 AGGAAAACGGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477274 44 - 13858734 AGGAAAACGGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599462 44 + 32716333 aagaaaacagagcatactaaaccaagggcgtttccctctcagtt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672001 44 - 185818997 aagaaaacagagcatactaaaccaagggcgtttccctctcagtt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480075 44 - 192294377 AAGAAAACAGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924902 44 + 9440265 aagaaaacagagcatactaaaccaagggcgtttccctctcagtt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664213 44 + 21915920 AAGAAAACAGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12308657 44 - 90373283 AAGAAAACAGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636555 44 + 1337817 AAGAAAACAGAGCATACTAAACCAAGGGCGTTTCCCTCTCAGTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615486 42 - 3237654 AAGAAAAC--AGCATACTAAACCAAGGGCATTTCCCTCTCAGTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147230 44 + 50472720 AAGAAAACAGAGCATACTGAACCAAGGGTCTTTCCCTCTCAGTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495811 44 + 13128814 aagaaaacagagcatactaaaccaagggtctttccctctcagtt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033362 44 - 14377064 AACAAAATAGAGCATACTAAACCAAGGGTCTTTCCCTCTCAGTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081046 44 + 9889416 aagaaaacagagcatactaaaccaagggtctttccctctcagtt i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849386 44 + 47401472 AAGAAAACAGAGCATACCAAGCTTAGGGTCATTTAGTCTCAATC i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18333189 44 - 38779656 aaagaaaCAGAGCATTCAAAGCTTAGGGTCTTTTAGTCTCAATT i otoGar3.GL873528 I 315 C 0 s mm10.chr16 75832519 21 + 98207768 --------GGAATAT---------------TTTCCTCTTCAGGT i mm10.chr16 C 0 C 0 s canFam3.chr31 11448495 44 + 39895921 ATAACAACAGACCATACTAAGCTGAGGGTCTTTCAGCCTCAACT i canFam3.chr31 I 6 C 0 s dasNov3.JH568778 646002 44 - 6883506 AAGACAGCAGGTCATGCCATGTCGAGTGCCTTTTATTCCCAATT i dasNov3.JH568778 C 0 I 7418 a score=1064260.000000 s hg38.chr21_GL383578v2_alt 43055 96 + 63917 ctaaattcagcaggagaggattttattgtctcagctcatgtcaaacaagtacttttccttgaattaattagg--ggaagggggtttggtaaagaaaca s panTro5.chr21 880552 96 + 33445071 CTAAATTGAGCAGGAGAGGATTTTATTGTCTCAGCTCATGTCAAACAAATACTTTTCCTTGAATTAATTAGG--GGAAGGGGGTTTGGTAAAGAAACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565202 96 + 46275980 CTAAATTCAGCAGGAGAGGATTTTATTGTCTCAGCTCATGTCAAACAAATACTTTTCCTTGAATTAATTAGG--GGAAGGGGGTTTGGTAAAGAAACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477318 96 - 13858734 CTAAATTCAGCAGGATAGGATTTTATTGTCTCAGCTCATGCCAAACAAGTACTTTTCCTTGAATTAATTAGG--GGAAGGGGGTTTGGTAAAGAAACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599506 96 + 32716333 ctaaattcagcaggagaggattttactgcctcagctcgtgtcaaacaagtacttttccttgaattaattagg--ggaagggggtttggtaaagaaaca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672045 96 - 185818997 ctgaattcagcaggagaggattttattgtctcagcttatgtcaaatgagtacttttgcttgaattaattatg--ggaagggggtttggtaaagaaaca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480119 96 - 192294377 CTGAATTCAGCAGGAGAGGATTTTATTGTCTCAGCTTATGTCAAATGAGTACTTTTGCTTGAATTAATTATG--GGAAGGGGGTTTGGTAAAGAAACA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5924946 96 + 9440265 ctgaattcagcaggagaggattttattgtctcagcttatgtcaaatgagtacttttgcttgaattaattatg--ggaagggggtttggtaaagaaaca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664257 96 + 21915920 CTGAATTCAGCAGGAGAGGATTTTATTGTCTCAGCCTCTCTCTCTCTCTTACTTTTCCTTGAATTAATTATG--GGAAGGGGGTTTGGTGAAGAAACA i cerAty1.NW_012002954v1 C 0 I 12 s chlSab2.chr2 12308701 96 - 90373283 CTGAATTCAGCAGGAGAGGATTTTATTGTCTCAGCTCATGTCAAATGAGTACTTTTCCTTGAATTAATTATG--GGAAGGGGGTTTGGTAAAGAAACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636599 96 + 1337817 CTGAATTCAGCAGGAGAGGATTTTATTGTCTCAGCTCATGTCAAATGAGTACTTTTCCTTGAATTAATTATG--GGAAGGGGGTTTGGTGAAGAAACA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615528 96 - 3237654 CTGAATTCAGCAGGAGAGGATTTTATTGTCTCATCTCATGTCAAATGAGTACTTTTCCTTGAATTAATTATG--GGAAGGGGGTTTGGTAAAGAAACG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147274 96 + 50472720 GGAAATTCCGCAGGAGAGGATTTTATTGTTTTAGCTCCTGTCAAAGGAGTATTTTTCCTTGAATTAATTATG--GTAAGTGGGTTTGGTAAAGAAACA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495855 96 + 13128814 cgaaattcctcaggagaggattttattgtctcagctcctgtcaaaggagtacttttccttgaattaattatg--gtaagtgggtttggtaaagaaaca i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033406 96 - 14377064 TGAAACTCTAAAGGAGAGGATTTTATTGTCTCAGCTCCTGTCAAAGGAGTACTTTTCCTTGAATTAATTACA--GTAAGTGGATTTGGTAAAGAAACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081090 96 + 9889416 caaaattccgcaggagaggattttattgtctcagctcctgtcaaaggagtacttttccttgaattaattatg--gtgagtgggtttggtaaagaaaca i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849430 95 + 47401472 CTAAATTCAGCAGCGGAGGATTTTATTGTCTCAGCTCATGTCAGATGAGTATTCTTCCTTGAATTAACTGAGTGGTAAGAGAGTTTGGTTAAGGA--- i micMur3.chr31 C 0 I 2 s otoGar3.GL873528 18333233 95 - 38779656 TTAAATTCAGCAGGGGAGGATTTTATCCTTGTAGCTTATGTCAGCTGAGTGCTCTTCCTTGAATTAACTGTGTATTAAGGGGGTTTGGTTAGACA--- i otoGar3.GL873528 C 0 I 2 s mm10.chr16 75832540 30 + 98207768 CTTAAC-------------------------CAATCCACCAGTAACAAACACACT------------------------------------------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11448539 94 + 39895921 CTAGATTAAGGACGGGAG--TTTATTTTTCACAGTTCAAGTCAGATGAGTACCCTTCCATAAATTAATTGTG--GCTCGGGGGTTTGGTAAGGAAACA i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 646046 7418 - 6883506 I a score=104751.000000 s hg38.chr21_GL383578v2_alt 43151 12 + 63917 tatatgtggctg s panTro5.chr21 880648 12 + 33445071 TATATCTGGCTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565298 12 + 46275980 TATATCTGGCTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477414 12 - 13858734 TATATCTGGCTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599602 12 + 32716333 tatatctggctg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672141 12 - 185818997 tatatctggctg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480215 12 - 192294377 TATATCTGGCTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5925042 12 + 9440265 tatatctggctg i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12308797 12 - 90373283 TATATCTGGCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636695 12 + 1337817 TATATCTGGCTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615624 12 - 3237654 TATATCTGGCTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147370 10 + 50472720 A--ACCTGGCTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495951 12 + 13128814 catacctggctg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033502 12 - 14377064 CATACCTGGCTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081186 12 + 9889416 catacctggctg i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849527 10 + 47401472 TACG--TTGCTG i micMur3.chr31 I 2 C 0 s otoGar3.GL873528 18333330 12 - 38779656 CATGCCTGACAG i otoGar3.GL873528 I 2 C 0 s mm10.chr16 75832570 10 + 98207768 CACATGTGAC-- i mm10.chr16 C 0 C 0 s canFam3.chr31 11448633 12 + 39895921 CATCTCTCGCTG i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 646046 7418 - 6883506 I e cerAty1.NW_012002954v1 5664353 12 + 21915920 I a score=3713315.000000 s hg38.chr21_GL383578v2_alt 43163 314 + 63917 ccaggAAGAT--------CCTCTCACTGCCTCTTCATCTTCTCTACCACTATGAATGAAAGAAGCC-----AGTCAAGA-ATGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGCCACAC--CCGAAAGTAAAACACAACGTATGTTCTCAATTGATCTGCCT-TGTAGATGCTTGTCAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGCTGTGGACAAGacatactcttattac--catttctttgaaatttagacactg-ttactgactttttactgcagaagagagggattttactccc s panTro5.chr21 880660 313 + 33445071 CCAGGAAGAT--------CCTCTCACTGCCTCTTCATCTTCTCTACCACTATGAATGAAAGAAGCC-----AGTCAAGA-ATGATTACCTAAAGGAA---------CTTTGACGACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCGAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TGTAGATGCTTGTCAAGAGGGCTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCAAAAGCTGTGGACAAGACATACTCTTATTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTATT-ACTGCAGAAGAGAGGGATTTTACTCCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565310 314 + 46275980 CCAGGAAGAT--------CCTCTCACTGCCTCTTCATCTTCTCTACCACTATGAATGAAAGAAGCC-----AGTCAAGA-ATGATTACCTAAAGGAA---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCGAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TGTAGATGCTTGTCAAGAGGGCTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCAAAAGCTGTGGACAAGACATACTCTTATTAC--CATTTCTTTGAAATTTAGACACTG-TTACTGACTTTATACTGCAGAAGAGAGGGATTTTACTCCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477426 322 - 13858734 CCAGGAAGAT--------CCTCTCACTGCCTCTTCATCTTCTCTACCACTATGAATGAAAGAAGCC-----AGTCAAGA-ATGATTACCTAAAGGACCACTTTGGTCCTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCGAAAGTAAAACGCAATGTATGTTCTTAATTGATCTGCCT-TGTAGATGCTTGTCAAGAGGGCTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGCTGTGGACAAGacatactcttattac--catttctttgaaatttagacacta-ttactgactatt-actgcagaagagagggattttactccc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599614 314 + 32716333 ccaggAAGAT--------CCTCTCACTGCCTCTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGA-ATGATTACCTAAAGGAC---------CTTTGACCACTGCCGAAGACCTGAACTTTCATAGTCACAC--CGGAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TGTAGATGCTTGTCAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGCTGCGGACAAGacatactcttattac--catttctttgaaatttagactcta-ttactgactttttactgcagaagagagggattttactccc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672153 314 - 185818997 ccaggAAGAT--------CCTCTCACTGCCGCTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGG-ATGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CGGAAATTAAAACACAATGTGTGTTCTCAACTGATCTGCCT-TATAGGTGCTTGTCAAATGGGGTTTTACCTTTGTGCCAATGTAGA------AATTAGGACCCAAAGTTGAGGACAAGACATAGTCCTATTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTTTTCACTGCAGAAGAGAGGGATTTTACTCCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480227 314 - 192294377 CCAGGAAGAT--------CCTCTCACTGCCGCTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGG-ATGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CGGAAATTAAAACACAATGTGTGTTCTCAACTGATCTGCCT-TATAGGTGCTTGTCAAATGGGGTTTTACCTTTGTGCCAATATAGA------AATTAGGACCCAAAGTTGAGGACAAGACATAGTCCTATTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTTTTCACTGCAGAAGAGAGGGATTTTACTCCG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5925054 314 + 9440265 ccaggAAGAT--------CCTCTCACTGCCGCTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGG-ATGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CGGAAATTAAAACACAATGTGTGTTCTCAATTGATCTGCCT-TATAGGTGCTTGTCAAATGGGGTTTTACCTTTGTGCCAATATAGA------AATTAGGACCCAAAGTTGAGGACAAGACATAGTCCTATTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTTTTCACTGCAGAAGAGAGGGATTTTACTCCG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664365 314 + 21915920 CTAGGAAGAT--------CCTCTCACTGCCGCTTCATCTTCTCTACCACTATGAATGCTCTCTCTC-----TCTCTAGG-ATGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCAAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TATAGGTCTCTCTCTCTCTCTGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGTTGAGGACCTCTCTCTCTCTCTTTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTTTTCACTGCAGAAGGGAGGGATTTTACTCCG i cerAty1.NW_012002954v1 I 12 C 0 s chlSab2.chr2 12308809 314 - 90373283 CCAGGAAGAT--------CCTCTCACTGCCACTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGG-ATGATGACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCAAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TATAGGTGCTTGTCAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGTTGAGGACAAGACATAGTCCTATTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTTTTCACTGCAGAAGAGAGGGATTTTACTCCG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 636707 314 + 1337817 CCAGGAAGAT--------CCTCTCACTGCCGCTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGG-ATGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCAAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TATAGGTGCTTGTCAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGTTGAGGACAAGACATAGTCCTATTAC--CATTTCTTTGAAATTTAGACACTA-TTACTGACTTTTCACTGCAGAAGAGAGGGATTTTACTCCG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615636 314 - 3237654 CCAGGAAGAT--------CCTCTCACTGCCGCTTCATCTTCTCTACCACTATGAATGAAGGAAGCC-----AGTCAAGG-ATGATTACCTAAAGGAC---------CTTTGATTACTGTCAAAGACCTGAACTTTCATAGTCACAC--CCGAAAGTAAAACACAATGTATGTTCTCAATTGATCTGCCT-TAGAGGTGCTTGTCAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGCTAAGGACAAGacatactcctattac--catttctttgaaatttagacacta-ttactgacttttcgctgcagaagagagggattttactccc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147380 300 + 50472720 CCAGGAACAT------------------CCTCTTCATCCTCTTTACCACTATGAAGCGAGGAAGCC-----TGGCAAAA-ACTATTACCTAAAGGAC---------CCTTGACCATTGTCAAAGACCTGAACTTTCATAGTCACAG--TCGAAAGTAAAACACAATGTATGTTCTTAATTGATCTGCCT-TATAGGTGCTTGACAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGCTGAGGACAAGacattctcctattac--catttctttgaaatttagaca--g-ttactgac--ttcactgcagaagagcaggattttgctccc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2495963 319 + 13128814 ccaggAAGGTATGTGTTTCCTCTCACTGCCTCTTCATCCTCTTTAGCACTATGAAGTGAGGAAGCC-----TGGCAAGA-ACGATGACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTGAACTTCCATAGTCACAC--TTGAAAGTAAAACACAATATATGTTCTCAATTGATCTGCCC-TACAGGTGCTTGTCAAGA-AAGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACTCAAAGCTGAGGACAAGacattctcctattac--catttctttgaaatttagacactg-ttactgat--gtcaccgcggaagcgcgggattttgctcgc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033514 312 - 14377064 CCAGGAAGAT--------CCTCTCACTGCCTCTTCATCCTCTTTACCACTATGAAGCGAGGAAGCC-----TGGCAAGA-ACGATTACCTAAAGGAC---------CTTTGACCACTATCAAAGACCTGAACTTTCATAGTCACAC--TCGAAAGTGAAACACAATGTATGTTCTCAATTGATCTGCCT-TATAGGTGCTTGTCAAGAGGGGTTTCACCTTTGTGTCAATATAGA------AAGTAGGACCCAAGGCTGTGGACAAGacattctcctattac--catttctttgaaatttagacactg-ttactgac--ttcactgcagaagagcaggattttgctccc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081198 311 + 9889416 ccaggAAGAT--------CCTCTCACTGCCTCTTCATCCTCTTTACCACTATGAAGCGAGGAAGCC-----TGGCAAGA-ACGATTACCTAAAGGAC---------CTTTGACCACTGTCAAAGACCTG-ACTTTTATAGTCACAC--TCGAAAGTAAAATACGATGTATGTTCTCAATTGATCTGCCT-TATAGGTGCTTGTCAAGAGGGGTTTTACCTTTGTGCCAATATAGA------AAGTAGGACCCAAAGCTGAGGACAAGatattctcctattac--catttctttgaaatttagacactg-ttactgac--ttcactgcagaagagcaggactttgctccc i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16849537 301 + 47401472 CCAGGAATAT--------CCTCCCA------------CCTCTCTACCACTATGAATGAGGGAAGCC-----AGTCAAGT-ATAATTACTTAAAAGGC---------CTTTGACCATTGTCAAAGACCTGACCTTTCATAGTCACACCTCCAAAAGTGAAAGCCAATATATGTTCTCAATCGATCTGCCT-TTTATGTGCTtgttaagagggttttttcctttgtgcctaaatagg----------aagtcccaaatctgaggacaaGATATCCTTCTGTTAC--CATTTCtttgacttttagacactatttattgacttttcactgtggaagagagggattttgctccc i micMur3.chr31 C 0 I 2689 s otoGar3.GL873528 18333342 305 - 38779656 CCAGGAATAT--------CCTCCCA------------CCTCACCG-CACTATGAACGAAAGACGCCGCACAGGTCAAGT-ATAATCTCCTAAAGGGT---------CTCTGACCATTGTCAAAGACCTGGACTTTCTGAGTCATACCTCCGAAAGTAAAACCGAATGTCTGGTCACAATCACTCTGCCT-TTTATGTG-TTGTCAA---GGTTTTATTCTTTGTGCCAAAATAGA------AAGTAAGTTCCAAAGCTGAGAACAAGGcatgcttctgttgc--cttttctttaaattttaggcactatttattgatattttgcaagaaaagagagggattttactccc i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75832580 236 + 98207768 ----------------------------------------------------------------------------------CATTGCTT----------------CTACGATCATTGT------CCTGAACTTTCATGACATAAC-TCCAGAAGTAAAACCAAATAAAGGTTCTCAGTTGGTTGATTTGCATAGTTG-TTGTCATGGTGGAGGTATCTGTCATGTACATGTACATGTCTGAAGGAAGACTCA-------GCACTCAACACAGTGCTATTATCACATTTCTTTGAATTTCAGGTATAACTTATTGACTTTTCATGGTAGAAGAAAGGAATCTTTCTCCT i mm10.chr16 C 0 C 0 s canFam3.chr31 11448645 311 + 39895921 -CTGGGATGT--------TCTCCTATTA---CTTCACCTCCTCCACCACTATGAATCAGGAAAGCC-----AGTCAAAATATAATTACCTATAAGGT---------GTTTGACCATTGTTAAAGACCTGAACTTTTGTAGTCTTACTTGTGAAAGGAAAACTCAATATATGTTCTCAACTGATCTGCCT-TTTGTGTGTTTGTCAAGA-GGGTTGTTCCATTGTGGCAAAATAGG------AAGTAAGGTCCAAAGCTGA-AACCAaacatacttctattac--tatttctttgaa-tttaggcactgtttattgaccttccattgtggaagaagaggattttgttctt i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 646046 7418 - 6883506 I a score=1214795.000000 s hg38.chr21_GL383578v2_alt 43477 125 + 63917 cttcacagccgacatccttaccacaccaacactcatgcctgttcctctctcctATTCCCACATTTATATGCACCACTGTCACACAGCACA---TTTCCTGTTTCCACAATAT----------C---AATTTTGGATAGAAC s panTro5.chr21 880973 125 + 33445071 CTTCACAGCCAACATCCTTACCACACCAACACTCATACCTGTTCCTCTCTCCTATTCCCACATTTATATGCACCACTGTCACACAGCACA---TTTCCTGTTTCCACAGTAT----------C---AATTTTGGATAGAAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565624 125 + 46275980 CTTCACAGCCAACATCCTTACCACACCAACACTCATGCCTGTTCCTCTCTCCTATTCCCACATTTATATGCACCACTGTCACACAGCACA---TTTCCTGTTTCCACAATAT----------C---AATTTTGGATAGAAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477748 125 - 13858734 cttcacagccaacatccttaccacaccaacactcatgcctgttcctctctcctattcccacatttatatgcaccactgtcacacagcaca---tttcctgtttccacaatat----------c---aattttggatagaac i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1599928 125 + 32716333 cttcacagccaacatccttaccacaccaacactgatgcctgttcctctctcctattcccacatttatatgcaccactgtcacacagcaca---tttcctgtttccacaatat----------c---aattttgaatagaac i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672467 125 - 185818997 TTTCACAGCCAACATCCTCACCACACCAATACACACGCCTATTCCTCGCTCCTCTTCCCACATTTATACGCACCACTCTCACGTAGCACA---TTTCCTGTTTCCACAatat----------c---aatgctggatagaac i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480541 125 - 192294377 TTTCACAGCCAACATCCTCACCACACCAATACACACGCCTATTCCTCGCTCCTCTTCCCACATTTATACGCACCACTCTCACGTAGCACA---TTTCCTGTTTCCACAatat----------c---aatgctggatagaac i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5925368 125 + 9440265 TTTCACAGCCAACATCCTCACCACACCAATACACACGCCTATTCCTCGCTCCTCTTCCCACATTTATACGCAccactctcacacagcaca---tttcctgtttccacaatat----------c---aatgctggatagaac i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664679 125 + 21915920 TTTCACACCCAACATCCTCACCACACCAATACACACGCCTCTCTCTCTCTCTCTTTCCCACATTTATACGCACCACTCTCACACAGCACA---TTTCCTGTTTCCTCTCTCT----------C---TCTCTTGGATAGAAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12309123 125 - 90373283 TTTCACAGCCAATATCCTCACCACACCAATACACACGCCTATTCCTCGCTCCTCTTCCCACATTTATACGCAGCACTCTCACACAGCACA---TTTCCTGTTTCCACAatat----------c---aatgctggatagaac i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637021 125 + 1337817 TTTCACAGGCAACATCCTCACCACACCAATACACACGCCTATTCCTCGCTCCTCTTCCCACATTTATACGCAccactctcacacagcaca---tttcctgtttccacaatat----------c---aatgctggatagaac i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 615950 125 - 3237654 tttcacagccaacatcctcaccacaccaatacacacgcctattcctctcttctgttcccacatttatacgcaccactctcacacagctca---tttcctgtttccacaatat----------c---aattctggatagagc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147680 123 + 50472720 tttgacacccagcattctca-cacaccaacacacatgcttattcccctctccca-tcccacttttatatgcaccactctcacataacgta---tttcctgttttcacagtat----------c---aattctggatagaac i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2496282 123 + 13128814 tttgacacccagcatcctca-cacatcgacacacatgcttatttccctctccca-tcccacttttataggcaccactctcacacaacata---cttcctgttttcacagtat----------c---aattctggatagaac i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033826 123 - 14377064 tttgacacccagcatcctca-cacaccaacacacatgcttattcccctctccca-tcccaCTTTTATATGCACCACTCTCACACAACATA---TTTCCTGTTTTCACAGTAT----------C---ACTTCTGGATAGAAC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081509 123 + 9889416 tttgacgcccagcatcctca-cacaccaacacacatgcttattcccctctccca-tcccacttttatatgcaccactctcacacaacata---tttcctgttttcacagttt----------c---aattctggatggaac i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18333647 124 - 38779656 tctgacacccaacttcc-cacaacaccaacaccca--cctagtacctcccccaatccccgcaTTTATACACAGCACCCCCACATAGTACATATTTTTTTCTTTTCTTAAt-t----------t---aatttttattaaatc i otoGar3.GL873528 C 0 I 649 s mm10.chr16 75832816 115 + 98207768 TGTGACATCTAAAATCCT-ACCACAGTCAGACGCA------------GTGCACCATACCACTTATCTATGACCCATTCTCTTAAAGCACA---CTGCCTATGCCTAAGTCAT----------CTAGACTCTTGGATAAAAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11448956 122 + 39895921 tttgacacccaatatctctaccacaccaatgtacttgcctagctccctcacccc-------------acacaacattctcatacaacaca---ttttctatgcctgtcacatagttatatcat---aattttggataaaac i canFam3.chr31 C 0 C 0 e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I a score=991942.000000 s hg38.chr21_GL383578v2_alt 43602 98 + 63917 AATAA-TTCGTGTTTatattattattaatatgtaaatgttat-ttac-atagaactatgtaaaatatagc---ataagccag---aattggttaatccatactgtag s panTro5.chr21 881098 98 + 33445071 aataa-ttcatgtttatattattattaatatgtaaatgttat-ttac-atagaactatgtaaaatatagc---ataagccag---aattggttaatccatactgtag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565749 98 + 46275980 aataa-ttcatgtttatattattattaatatgtaaatgttat-ttac-atagaactatgtaaaatatagc---ataagccag---aatcggttaatccatactgtag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477873 98 - 13858734 aataa-ttcatgtttatattattattaatatgtaaatgttat-ttac-atagaactatgtaAAATATAgc---ataagccag---aattggttaatccatactgtag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1600053 98 + 32716333 aataa-ttcatgtttatattattatgaatatgtaaatgttct-ttac-atagaactatgtaAAATATAgc---ataagccag---aataggttaatccataccgtag i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672592 97 - 185818997 aaaaa-ttagtgtttatattattatgaatatgtaaatattat-ttgc-gta-aactatgtaAAATATAgc---ataagccag---aataggttcatccatactgtgg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480666 97 - 192294377 aaaaa-ttagtgtttatattattatgaatatgtaaatattat-ttgc-gta-aactatgtaAAATATAGC---ATAAGCCAG---AATAGGTTCATCCATACTGTGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5925493 97 + 9440265 aaaaa-ttagtgtttatattattatgaatatgtaaatattat-ttac-gta-aactatgtaAAATATAgc---ataagccag---aataggttcatccatactgtgg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664804 98 + 21915920 AAAAA-TTAGTGTTTATATTATTATGAATATGTAAATGCTCTCTCTC-TCT-CTCTATGTAAAATATAGC---ATAAGCCAG---AACAGTTTCATCCATACCGTAG i cerAty1.NW_012002954v1 C 0 I 9 s chlSab2.chr2 12309248 98 - 90373283 aaaaa-ttagtatttatattattatgaatatgtaaatgttat-ttac-atagaactatgtaAAATATAgc---ataagccag---aataggttcatccataccgtag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637146 98 + 1337817 aaaaa-ttagtgtttatattattatgaatatgtaaatgttat-ttac-atagaactatgtaAAATATAgc---ataagccag---aatagtttcatccataccgtag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 616075 98 - 3237654 aaaaa-ttagtgtttgtattattatgaatatgtaaatgttat-ttac-agagaactatgtaAAATATAgc---ataagccag---aataggttcatccataccatag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147803 99 + 50472720 aataatttagtgtttatatttttatgaatatgtgaatgttat-ttac-aTAGAACTATGGAAAATATAGC---ATAAGCCAG---AATAAGTTAATCCATACCTTAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2496405 97 + 13128814 aataatttagtgtt--tattattatgaatatgtgaatgttat-CTGC-ATAGAACTATGGAAAATATAGC---ATAAGCCAG---AATAGGTTAATCCATACCATGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7033949 88 - 14377064 AATAATTTA----------TATTATGAATATGTGAATGTT-T-TTAC-ATAGAACTATGGAAAATATAGC---ATAAGCCAG---AATAAGTTAATCCATACCATAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081632 99 + 9889416 aataatttagcgtttatattattatgaatatgtgaatgttat-ttac-aTAGAACTATGGAAAATATAGC---ATAAGCCAG---AATAAGTTAATCCATACCATAG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18334420 97 - 38779656 aataa-ttagtgtttacgttattatgaatat-taaatgtctt-ttgc-atagaaccatataaaatattat---ATAAACTAG---AATAGAACAATCTATACCATAT i otoGar3.GL873528 I 649 I 1 s mm10.chr16 75832931 83 + 98207768 TGCAG-CTAGTGTTTA---TTTTAGAAATAGGCAGGTATTAT-TTAC-ATA--------CAGAATATATCTTGATTAGCTAA---AATAGGCTGATCCAT------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11449078 101 + 39895921 aatag-ttactgttt-tattactgtgaacacataaatgttct-ttacaatagaactatgtaaaatattat---gTTAGCCAGCCAGATAGGCTAATCTACATCACAG i canFam3.chr31 C 0 C 0 e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I a score=57600.000000 s hg38.chr21_GL383578v2_alt 43700 9 + 63917 taacaatca s panTro5.chr21 881196 9 + 33445071 taacaatca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565847 9 + 46275980 taacaatca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477971 9 - 13858734 taacaatca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1600151 9 + 32716333 taacaatca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672689 9 - 185818997 tagcaatca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480763 9 - 192294377 TAGCAATCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5925590 9 + 9440265 taacaatca i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12309346 9 - 90373283 taacaatca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637244 9 + 1337817 taacaatca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 616173 9 - 3237654 taacaatca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147902 9 + 50472720 TAAGGAGCA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2496502 9 + 13128814 TAAGGAGCA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034037 9 - 14377064 TAAGGGACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081731 9 + 9889416 TAAGGAACA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18334518 8 - 38779656 TATTAATG- i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75833014 7 + 98207768 --ATATGCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11449179 9 + 39895921 TAATGAACA i canFam3.chr31 C 0 C 0 e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e cerAty1.NW_012002954v1 5664902 9 + 21915920 I a score=4283211.000000 s hg38.chr21_GL383578v2_alt 43709 400 + 63917 acaccagaatttcagtggcttTCCG-TCGTGCAAAATCAGCTCCAGGTTCA--AGTGACTCTCCAGGGCA-TTTGTCCTTCATGC-TT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CCCACTCAATAATAATTTC--AAAGGGAAAggagagagagaa----gggagtggaaaatccaggggcttttcattgcttcagaccagaagtgatcatttgttatttttgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaattgcatggatattgggatatgaaattttcaggagggaaaactgaatgggatattggtgaTGTCTATTACATG------------------TCAGATTACTTTTTCTCTTTTTTCCACTTTTTGTTGAGTT-TAAAAAT----TCCTGAAGGTTAT-----------A----- s panTro5.chr21 881205 400 + 33445071 acaccagaatttcagtggcttTCCG-TCTTGCAAAATCAGCTCCAGGTTCA--AGTGGCTCTCCAGGGCA-TTTGTTCTTCATGC-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CCCACTCAATAATAATTTC--AAAGGGAAAggagagagagaa----gggagtggaaaatccaggggcttttcattgcttcagaccagaagtgatcatttgttatttttgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaattgcatggatattgggatatgaaattttcaggagggaaaactgaatgggatattggtgaTGTCTATTACATG------------------TCAGATTACTTTTTCTCTTTTTTCCACTTTTTGTTGAGTT-TAAAAAT----TCCTGAAGGTTAT-----------A----- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14565856 400 + 46275980 acaccagaatttcagtggcttTCCG-TCGTGCAAAATCAGCTCCAGGTTCA--AGTGACTCTCCAGGGCA-TTTGTCCTTCATGC-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CCCACTCAATAATAATTTC--AAAGGGAAAggagagagagaa----gggagtggaaaatccaggggcttttcattgcttcagaccagaagtgatcatttgttatttttgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaattgcatggatattgggatatgaaattttcaggagggaaaactgaatgggatattggtgaTGTCTATTACATG------------------TCAGATTACTTTTTCTCTTTTTTCCACTTTTTGTTGAGTT-TAAAAAT----TCCTGAAGGTTAT-----------A----- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 477980 400 - 13858734 acaccagaatttcagtggcttTCTG-TCGTGCAAAATCAGCTCCAGGTTCA--AGTGACTCTCCGGGGCA-TTTGTCCTTCATGC-AT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CCCACTCAATAATAATTTC--AAAgggaaaggagagagagaa----tggagtggaaaatccaggggcttttcattgcttcagaccagaagtgatcatttgttatttttgctcaca------------------cttaattgactc----------------------------------aaactagccacatggctttgtctaattgcatggatattgggataagaaattttcaggagggaaaactgaatgggatattggtgaTGTCTATTACATG------------------TCAGATTACTTTTTCTCTTTTTTCCACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTTAT-----------A----- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1600160 402 + 32716333 acaccagaatttcagtggcttTCTG-TCGTGCAAAGTCAGCTCCAGGCTCA--AGTCACTCTCCAGGGCA-TTTGTCCTTCATGT-GT-GACACAGTTGTCCAGAATGTTCTGATCTTGTGGC-TGCACCCCCCGCTCAAGAATAATTTC--AAAGTGAAAggagagagagaa----gggagtggaaaatccagggccttttcatagcttcagaccataagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaattgcatggatattgggatatgaaa-tttcaggagggaaaagtgaatgggatattggtgaTGGCTATTACATG------------------TCAGATTACTTTGTCTCTTTTTTCTACTTTTTGCTGAGTT-AAAAAAA----TCCTGAAGGTCAT-----------A----- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152672698 401 - 185818997 acaccagaatttcagtggcttTGAGTTCATGCAAAGTCAGCTCCAGGTTCA--AGTGACTCTTCAGGGCA-TTTGTCCTTCATGT-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CTCACTCAATAATAATTTC--AAAGGgaaaggaaagagagaa----gggagtggaaaatccaggggcttttcatatcttcagaccagaagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaattttcagaaggaaaaagtgaatgatatattggtgaTGTCTACTATGTG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159480772 401 - 192294377 ACACCAGAATTTCAGTGGCTTTGAGTTCATGCAAAGTCAGCTCCAGGTTCA--AGTGACTCTTCAGGGCA-TTTGTCCTTCATGT-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CTCACTCAATAATAATTTC--AAAGGgaaaggaaagagagaa----gggagtggaaaatccaggggcttttcatatcttcagaccagaagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaattttcagaaggaaaaagtgaatgatatattggtgaTGTCTACTATGTG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5925599 401 + 9440265 acaccagaatttcagtggcttTGAGTTCATGCAAAGTCAGCTCCAGGTTCA--AGTGACTCTTCAGGGCA-TTTGTCCTTCATGT-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTAGC-TGCA---CTCACTCAATAATAATTTC--AAAGGgaaaggaaagagagaa----gggagtggaaaatccaggggcttttcatatcttcagaccagaagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaattttcagaaggaaaaagtgaatgatatattggtgaTGTCTACTATGTG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5664911 401 + 21915920 TCTCTAGAATTTCAGTGGCTTTGAGTTCATGCAAAGTCAGCTCCAGGTTCA--ACTCTCTCTCTCTCTCA-TTTGTCCTTCATGT-GT-GACACAGCTGTCCAGAATGTTCTGATCTTCTCTC-TCTC---TCTCTTCAATAATAATTTC--GATGGGAAAGGagagagagaa----gggagtggaaaactctctctctctctattgcttcagaccagaagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaatTTTCTCTCTCTCTCTCTGAATGATATATTGGTGATGTCTACTATGTG------------------TCAGATTACTTTTTCTCCTCTCTCTCTCTCTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i cerAty1.NW_012002954v1 I 9 C 0 s chlSab2.chr2 12309355 401 - 90373283 acaccagaatttcagtggcttTGAGTTCATGCAAAGTCAGCTCCAGGTTCA--AGTGACTCTTCAGGACA-TTTGTCCTTCATGT-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CTCGCTCAATAATAATTTC--gacgggaaaggagagagagaa----gggagtggaaaatccagggacttttcattgcttcagaccagaagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaagtttcagaaggaaaaagtgaatgatatattggtgaTGTCTACTATGTG------------------TCAGATTCCTTTTTCTCTTTTTTCTACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637253 401 + 1337817 acaccagaatttcagtggcttTGAGTTCATGCAAAGTCAGCTCCAGGTTCA--AGTGACTCTTCAGGACA-TTTGTCCTTCATGT-GT-GACACAGCTGTCCAGAATGTTCTGATCTTGTGGC-TGCA---CTCGCTCAATAATAATTTC--gacgggaaaggagagagagaa----gggagtggaaaatccaggagcttttcattgcttcagaccagaagtgatcatttgctatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaattttcagaaggaaaaagtgaatgatatattggtgaTGTCTACTATGTG------------------TCAGATTACTTTTTCTCTTTCTTCTACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 616182 400 - 3237654 acaccagaatttcagtggcttTCGG-TCATGAAAAGTCAGCTCCAGGTTCA--AGTTACTCTCTAGGGCA-TTTGTCCTTCATGT-GT-GACACAGCTATCCAGAATGTTCTGATCTTGTGGC-TGCA---CTCGCTCAATAATAATTTC--AAAGGGAAAggagagagagaa----gggagtggaaaatccaggggcttttcattgcttcagaccagaagtgatcatttgttatttctgctcaca------------------cttaattgactc----------------------------------aaactagtcacatggctttgtctaagtgcatggatactgggatatgaaattttcaggagggaaaagtgaatgggatattggcgaTGTCTACTACGTG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTGTTGAGTT-TAAAAAA----TCCTGAAGGTCAT-----------A----- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19147911 400 + 50472720 ACACCAGAATTTCATTGGCTTTCGG-TCAAGCAAAGTCAGCTCCAGGTTCA--AATGATTCGCCAGGGCA-TTTGTCCTTCATGC-AT-GACACAGCTATCTAGAATGTTTTGATCTTCTGGC-TGGA---CCCACTCAGTAATGATTTC--GAaaggaaaagagacagagaa----gggagtaaaaattccaggggcttttcattgtttaagaccagaagtgatcatttgttatttttgctcaca------------------gttaattgactc----------------------------------aaactagtcacatggctttgtctaattgcatggatatcgggatctggaatttt-tggagggaaaagtgaatgggatattggtgTTGTCTACTACATG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTCCTGAATT-AAAAAAA---TTCCTGAAGCTCAT-----------C----- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2496511 402 + 13128814 ACACCAGAATTTCATTGGCTTTCGG-TCATGCAAAGTCAGCCCAAGGTTCA--AATGACTCGCCGGGGCA-TTTGTTCTTCTTGC-AT-GACACAACTATCTAGAATGTTCTGATCTTCTGGC-CGCA---CCCACTCAATAATGACTTT--GAAGTgaaaggaaacagagaa----tggagtgaaaaatccagaggcttttcactgtttaagaccagaagagatcatttgttatttttgctcaca------------------gttaattgactc----------------------------------aaactagtcacatggctttatctaactgcatggatatcgggatctggaattttggggagggaaaagtgaatgggatattggtgTTGTCTACTTCATG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTCCTGAGTTAAAAAAAA---TTCCTGAAGCTCAT-----------A----- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034046 401 - 14377064 ACACCAGAATTTCATTGGCTTTCAG-TCATGCAAAGTCAGCTCCAGGTTGA--AATGACTCACCAGGGCA-TTTGTCCTTCATAC-AT-GACACAGCTATCTAGAATGTTCTGATCTTCTGGC-TGGA---CCCACTCAATAATGATTTC--gaagggaaaggagacagagaa----gggagggaaaaatctactggcttttcattgtttaagaccagaagtgatcatttgttatttttgctcaca------------------gttaattgactc----------------------------------aaactagtcacatggctttgtctaattgcatggatatggggatctagaattttggggagggaaaagagaatgggatattggtgTTGTCTACTTCATG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTTCTGAATT-AAAAAAA---TTCCTGAAGCTCAT-----------A----- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6081740 399 + 9889416 GCACCAGAATTTCATTGGCTTTCGG-TCATGCAAAGTCAGCTTCAGGTTCA--AATGACTTGCCAGGGCA-TTTGTCCTTCATGC-AT-GACACAGCTATCTAGAATGTTCTGATCTTCTGGC-TGGA---CCCACTCAATAATGATTTC--GAAGGGAAAGGAGACAGAGAA----GGGAGTGAAAAATCCAGGGGCTTTTCATTGTTTAAGACCAGAAGTGATCATTTGTTATTTT--CTCACA------------------GTTAATTGACTC----------------------------------AAACTAGTTACATGACTTTGTCTAATTGCATGGATATTGGGATCTGGAATTTTTGGGAGGGAAAAGTGAATGGGATATTGGTGGTGTCTACTACATG------------------TCAGATTACTTTTTCTCTTTTTTCTACTTTTTCCTGAATT-AAAAAAA---TTCCTGAAGCTCAT-----------A----- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18334526 368 - 38779656 ACACCAGAATCTCAGTGGCTTTTGG-CTGTGCTAGGTTTGCTCCA-------------TTCTCCAGGAAC-TTTGTTCTTCCTGCTGG-GACCCAGCAGTCCAGAGTGTTCTGATCTTGTGACTTATA---CTAACTCAATAATAATTTC--TAAGGCAAAAGAGGGGGAGAG----------------TTTAGGGGCTTGTCGTTgcttcggaccaaaagtga----ttgtcactcttgctcaca------------------cccaattggctc----------------------------------acactattcacatggtcctgtcaaattgcaaggttactgggttgtggaattttcatgcaggaaaagaaaatcagatattggtgaaGTCAACTACATG------------------TGAAATTCTTTT----------------------TAAGTT-TTAAAAACATTTCCTGAAGGTCATATAATACTTGCA----- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75833021 460 + 98207768 ATAGCAGAATCATTATGGATTTCGC-TTGTGATAAATTTGTCCCATGTTTAGGAGTGACTCTACA-------------CTCATGC-ATAGCCTTGGCAGTCCAGAATGTTCCAATA-TGTAGC-T------GTCACAGAATACTACTTTCCTACAGGCAAAGGATTCAGGAAATGACAGGAGACAGAATTCCAGGATCTTTTCTCTGTATCATACCCGGGGTGATTAGTTGTCATTTCTGCTTAGAAGATGCTGGCGATGTCATCCTATTTGATTCTAACTGTTTTGGTAGTTCCACACTTTTTTTTAAAACACTGGTTACATTGTCTTGTC--ATTTTATAGA-GTTGGGCTATGTAATTCTCAAGAAGAAATAAAGAATAGGATGGTAGTGATATCTGCCTTATGGATAGATATCACTACTACTTTCATTGTTTCTATAATTCTTTTTCTTTTTTTTTCTTTT-TTAAAAG----TCCTAAAGTTCAT-----------A----- i mm10.chr16 C 0 I 885 s canFam3.chr31 11449188 388 + 39895921 ATGCCAGAACCTCAGTGGCTTTTGC-TTATACAAAGTCCACTCCAGGATCA--AGTGACTCCCCTGGGCAGTTTTCCCTTAATGC-ATTGACCCAGTAGTCCAGAATACTCTGATCTTGTGAC-TGTA---CCCACTCAATAACGATCTC--TAAGGCAAA--AGAAAGAGAA----TGGAGTTGAAAAT-TGGGGCATTTTCCCTACTTTGGGTT-gaaatggttatatgacactcatactcaca------------------ttttgttgaccc----------------------------------agacaagtcatatgtccttgtctaattgcaagaatattgggatgtggaattctCAAGAAAGGAAGGAAAATGGGATATTTGTGATGTCTATTACATA------------------TGAGATTACTTTTTAAAGTTTTT---------------TT-TTAAACT----TCCTAAAATTCAT-----------ATTATA i canFam3.chr31 C 0 C 0 e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I a score=198578.000000 s hg38.chr21_GL383578v2_alt 44109 20 + 63917 CTTATTTTGTTATTTTGTTT--------------- s panTro5.chr21 881605 20 + 33445071 CTTATTTTGTTATTTTGTTT--------------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566256 20 + 46275980 CTTATTTTGTTATTTTGTTT--------------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478380 20 - 13858734 CTTATTTTGTTATTTTGTTT--------------- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1600562 20 + 32716333 CTTATTTTGTTATTTCGTTT--------------- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673099 20 - 185818997 CTTGTATTGTTATTTTGTTT--------------- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159481173 20 - 192294377 CTTGTATTGTTATTTTGTTT--------------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5926000 20 + 9440265 CTTGTATTGTTATTTTGTTT--------------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5665312 20 + 21915920 CTTGTATTGTTATTTTGCTC--------------- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12309756 20 - 90373283 CTTGTTTTGTTATTTTGTTT--------------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637654 20 + 1337817 CTTGTATTGTTATTTTGTTT--------------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 616582 20 - 3237654 CGTGTTTTGTTATTTTGTTT--------------- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19148311 20 + 50472720 ATTGTTTTGTTATTTTATTT--------------- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2496913 20 + 13128814 CTTGTTTTGTTATTTTATTT--------------- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034447 20 - 14377064 CTTGTTTTGTGATTGTATTT--------------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6082139 20 + 9889416 CTTGTTTTGTTATTTTATTT--------------- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18334894 20 - 38779656 TTTTtttttttatttttttt--------------- i otoGar3.GL873528 C 0 I 348 s canFam3.chr31 11449576 35 + 39895921 CTTGTTTTATCATTTTATATGCATAAGATATGCAT i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I a score=2827061.000000 s hg38.chr21_GL383578v2_alt 44129 281 + 63917 ACTCATATAAAAtatg-agtttcatctacttgaccata-tctcccctttagca-ttttgaccagtttcaatctcgactgggttttctccataacagttttg-gagttgttttcctgggactctttctgcctctcactttgagttgatcccaaatattcctc--ttttggttttacatcttcactttgatggagcatgtcgtaca-tgatttcttgag-atgggtacattggaggtaaatttttcaataactcatatatctaaaaatgcatttctaaatttcatttttat s panTro5.chr21 881625 282 + 33445071 GCTCATATAAAAtatg-agtttcatctacttgaccata-tctcccctttagca-ttttgaccagtttcaatctcgactgggttttctccataacagttttg-gagttgttttcctgggactctttctgcctctcactttgagttgatcccaaatattcctc--ttttggttttacatcttcactttgatggagcatgtcgtacagtgatttcttgag-atgggtacattggaggtaaatttttcaataactcatatatctaaaaatgcatttccaaatttcatttttat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566276 280 + 46275980 GCTCATATAAAAtatg-agtttcatctacttgaccata-tctcccctttagca-ttttgaccagtttcaatctcgactgggttttctccataacagttttg-gagttgttttcctgggactctttctgcctctcactttgagttgatcccaaatattcctc--ttttggttttacatcttcactttgatggagcatgtcgtacagtgatttcttgag-atgggtacattggaggtaaatttttcaataa--catatatctaaaaatgcatttctaaatttcatttttat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478400 281 - 13858734 GCTCATATAAAAtatg-agtttcatctacttgaccata-tctcccctttagca-ttttgaccagtttcaatctcgactgggttttctccataacag-tttg-gagctgttttcctgggactctttctgcctctcactttgagttgatcccaaatattcctc--ttttggttttacatcttcactttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtaaatttttcaataactcatatatctaaaaatgcatttctaaatttcatttttat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1600582 282 + 32716333 GCTCATATAAAAtatg-agtttcatctacttgaccata-tctctcctttagca-ttttgaccagtttcagcctcgactgggtttcttccgtaacagttttg-gagttgttttcctgggactctttctgcctctcactttgagttgatcccaaatattcctc--ttttggttttacatcttcattttgatggagcatgtcctacagtgatatcttgag-atgggtacgttggaggtaaatttttcagtaactcatatatctaaaaatgggttcttaaatttcatttttat i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673119 282 - 185818997 GCTGATATAAAAtatg-agtttcatctacttgaccatg-tctcttctttagca-ttttgaccagtttcaatctcaactgggttttctccataacagttttg-gagttgttttcctgggactcttttcacctttcactttgagctgatcccaaatattcctc--ttttggttttacatcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtgaatttttcaaaaagtcatatatctaaaaatgggtttttaaatttcatttttat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159481193 282 - 192294377 GCTGATATAAAAtatg-agtttcatctacttgaccatg-tctcttctttagca-ttttgaccagtttcaatctcaactgggttttctccataacagttttg-gagttgttttcctgggactcttttcaccTTTCACTTTGAGCTgatcccaaatattcctc--ttttggttttacatcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtgaatttttcaaaaagtcatatatctaaaaatgggtttttaaatttcatttttat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5926020 282 + 9440265 GCTGATATAAAAtatg-agtttcatctacttgaccatg-tctcttctttagca-ttttgaccagtttcaatctcaactgggttttctccataacagttttg-gagttgttttcctgggactcttttcacctttcactttgagctgatcccaaatattcctc--ttttggttttacatcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtgaatttttcaaaaagtcatatatctaaaaatgggtttttaaatttcacttttat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5665332 282 + 21915920 TCTCTCTCTCTATGTG-agtttcatctacttgatcatg-tctcttctttagca-ttttgaccagtctcaatctcgactgggttttctccataacagttttg-gagttgttttcctgggactcttttcacctttcactttgagctgatcccaaatattcctc--ttttggttttacgtcttcattttctctctctctctcttacagtgatttcttgag-atgggtacattggaggtgaatttttcaaaaactcatatatctaaaaatgggtttttaaatttcatttttat i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12309776 282 - 90373283 GCTGATGTAAAAtatg-agtttcatctacttgatcatg-tctcttctttagca-ttttgaccagtctcaatctcgactgggttttctccataacagttttg-gaattgttttcctgggactcttttcacctttcactttgagctgatcccaaatattcctc--ttttggttttaaatcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtgaatttttcaaaaagtcatatatctaaaaatgggtttttaaatttcatttttat i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637674 282 + 1337817 GCTGATATAAAATGTG-agtttcatctacttgatcatg-tctcttctttagca-ttttgaccagtctcagtctcgactgggttttcttcataacagttttg-gagttgttttcctgggactcttttcacgtttcactttgagctaatcccaaatattcctc--ttttggttttacgtcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtgaatttttcaataagtcatatatctaaaaatgggtttttaaatttcatttttat i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 616602 282 - 3237654 GCTGATATAAAAtatg-agtttcatctacttgaccatg-tctcttctttagca-ttttaaccagtttcaatctcgactgggttttctccataacagttttg-gagttgttttcctgggactctttctgcctctcactttgagctgatcccaaatattcctg--ttttggtttaacatcttcattttgagggaacatgtcctacagtgatttcttgag-atgggtacattggaggtgaatttttcaaaaagtcatatatctaaaaatgggtttttaAATTTCATTTTTAT i colAng1.NW_012116933v1 C 0 I 308 s calJac3.chr21 19148331 283 + 50472720 GCTGATACAGAAtatg-agatttgtctacttgaccata-tctctcctttagca-ttttgactagttccaatcttgactgggttttctccatagcagttttg-gagttgtttttct-gaactctttccacctttcactttgaactaatcccaaatattcctcttttttggttttacatcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacattggaggtaaatttttcaatagcacacatatctaaaaatgggtttttaaatttcatttttat i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2496933 283 + 13128814 GCTGATACAGAATATG-AGATTTGTCTACTTGACCATA-TCTCTCCTTTAGCA-TTTTGACTAGTCCCATTCTTGACTGGGTTTTCTCCATAGCAGTTTTG-GAGTTGttttcct-ggattcttcccacctttcactttgagctgatctcaaatattcctcttttttggttttacatcgtcattttgatggagcatgtcctacagcaatttcttgag-atgggtacattggaggtaaatttttcaatagcacacatatctaaaaatgggtttttaaatttcatttttat i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034467 283 - 14377064 GCTGATACAGAAtatg-agatttgtctacttgaccata-tctctcctttagca-ttttggctagttccaatcttgactgggttttctccatagcagttttg-gagttgttttcct-ggactctttccacctttcactttgaactgatcccaaatattcctcttttttggttttacatcttcattttgatggggcatgtcctacagcgatttcttgag-atgggtacattggaggcaaatttttcaatagcacacgtatctaaaaatgggtttttaaatttaatttttat i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6082159 282 + 9889416 GCTGATACAGAAtatg-agatttgtctacttgaccatg-tctctcctttagca-ttttgactagttccaatcttgact-ggttttctccatagcagttttg-gagttgttttcct-ggactctttccacctttcactttgagctgatcccaaatattcctcttttttggttttacatcttcattttgatggagcatgtcctacagtgatttcttgag-atgggtacgttggaggtaaatttttcaatagcacacatatctaaaaatgggtttttaaatttcatttttat i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11449611 260 + 39895921 ATATATATAGGATATGCCGGTTTCCCTACTTGACAGTATTTTCTCTTTTACCATTTTTGACCAGCTCCAAATGGTACT-GGTTTTCTACATGTCAGTTTTACAATTTTTTTtcctggaattcttttcac-tcttac-ttgagttgatccctgatactctt---ttttggttt-atgttctcattctcgtggaacatctcttccagtgattaattgagaaagggtaaattagagataaattgttagataacttgtatgtttaaaaata---------------------- i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e otoGar3.GL873528 18334914 348 - 38779656 I e dasNov3.JH568778 646046 7418 - 6883506 I a score=1413324.000000 s hg38.chr21_GL383578v2_alt 44410 174 + 63917 atct-aaaaatttctttattttacatcattttatttttactttgagattgtggctggatataaaaatctagtttgaaaataactttttcacaggattttaaaggcatttttttgttttatctcttgtaaatagtgcttctgtggagaaag------agcatttttattctgg-tattttatg s panTro5.chr21 881907 174 + 33445071 atct-aaaaatttctttattttacatcattttatttttactttgagattgtggctggatataaaaatctagtttgaaaataactttttcacaggattttaaaggcatttttttgttttatctcttgtaactagtgcttctgtggagaaag------agcatttttattctgg-tattttatg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566556 174 + 46275980 atct-aaaaatttctttattttacatcattttatttttactttgagattgtggctggatataaaaatctagtttgaaaataactttttcacaggattttaaaggcatttttttgttttatctcttgtaactagtgcttctgtggagaaag------agcaattctattctgg-tattttatg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478681 173 - 13858734 acct-aaaaatttctttattttacatcattttatttttactttgagattgtggctggatataaaaatctagtttgaaaataac-ttttcacaggattttaaaggcttttttttgttttatctcttgtaactagtgcttctgtggagaaag------agcatttttattctgg-tattttatg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1600864 172 + 32716333 atct-aaaaatttgtttattttacttcattttatttttactttgatattgtggctggatataaaaatctagtctgaaaataactttttcacgggattttaaaggc--ttttttcttttatctcttgtaactagtgcttctgtggggaaag------agcatttttattctga-tattttgtg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673401 174 - 185818997 atct-aaaagtttctttattttacttcagtttattttgactttgatatcgtggctggatataaaagtctcgtttgcaaataactttttcacagaattttaaaggcatttttttgttttatctcttgtagctagtgcttctgtggagaaag------agcatttttattctga-tattttatg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159481475 174 - 192294377 atct-aaaagtttctttattttacttcagtttattttgactttgatatcgtggctggatataaaagtctcgtttgcaaataactttttcacagaattttaaaggcatttttttgttttatctcttgtagctagtgcttctgtggagaaag------agcatttttattctga-tattttatg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5926302 173 + 9440265 atct-aaaagtttctttattttacttcagtttattttgactttgatatcgtggctggatataaaagtctcgtttgcaaataactttttcacagaattttaaaggca-ttttttgttttatctcttgtagctagtgcttctgtggagaaag------agcatttttgttctga-tattttatg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5665614 173 + 21915920 atct-aaaagtttctttatttctctctctctctctttgactttgatattgtggctggatataaaagtctagtttgcaaataactctctctctctcttttaaaggca-ttttttgttttatctcttgtagctagtgcttctgtggagaaag------agcatttttattctga-tattttatg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12310058 173 - 90373283 atct-aaaagtttctttattttacttcattttattttgactttgatatcgtggctggatataaaaggctcgtttgcaaataactttttcacagaattttaaaggca-ttttttgttttatcttttgtagctagtgcttctgtggagaaag------agcatttttattcgga-tattttatg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 637956 173 + 1337817 atct-aaaagtttctttattttacatcagtttattttgactttgatattgtggctggatataaaagtctagtttgcaaataactttttcacagaattttaaaggca-ttttttgttttatctcttgtagctagtgcttctgtggagaaag------agcatttttattctga-tattttatg i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19148614 174 + 50472720 atac-aaaaatgactt--ttttacttcattttatttttactttgatagtatggatagatat-aaaatctagtttgaaaataacttcctcacagaattttaaaggca-tttttcatttggtctcttgtagctagggcttctgtagagaaagt--ttaagcatttttattctga-tattttatg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2497216 178 + 13128814 atacaaaaaatgactttattttacttcattttatttttaccttgatagtgtggatagatataaaaatctagcttgaaaataacttcctcacagaattttaaaggca-ttttttattttgtctcttgcagctagtgcttctgcagagaaagt--taaagcatttttattctga-tattttatg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034750 177 - 14377064 atac-aaaaatgtctttattttacttcattttatttttactttgatagtgtggatagatataaaaatctagtttgaaaataacttcctcacagaattttaaaggca-ttttttattttgtctcttgtagctagtgcttctgcagagaaagt--taaagcatttttattctga-tattttatg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6082441 176 + 9889416 atgc-aaaaatgtctttattttacttcattttagttttactttgatagtgtggatagatataaaaatctagttggaaaataacttcctcacagaattttaaagaca-ttttt-attttgtctcttgtagctagtgcttctgtggagaaagt--taaagcatttttattctga-tattttatg i aotNan1.NW_018487195v1 C 0 I 32 s canFam3.chr31 11449871 158 + 39895921 ------------tttttattttatttcattttg--------ttgataatttggttagatttacagatctaagttggaaataattttctcacag--ttttaaaggca--ttgttcttttgtttcttgtatctagtgcttctgtggagaaggttataaagcatttttattccaatttttttatg i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e otoGar3.GL873528 18334914 348 - 38779656 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=163326.000000 s hg38.chr21_GL383578v2_alt 44584 30 + 63917 tctttttctt-ttt-------ccttttgaaactcttgt s panTro5.chr21 882081 30 + 33445071 tctttttctt-ttt-------tcttttgaaactcttgt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566730 30 + 46275980 tctttttctt-ttt-------tcttttggaactcttgt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478854 30 - 13858734 tctttttctt-ttt-------tcttttgaaactcttgt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601036 30 + 32716333 tctttttctt-ttt-------tcttttgaaactcttgt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673575 30 - 185818997 tctttttctt-ttt-------tcttttgaaactcttgt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159481649 30 - 192294377 tctttttctt-ttt-------tcttttgaaactcttgt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5926475 30 + 9440265 tctttttctt-ttt-------tcttttgaaactcttgt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5665787 30 + 21915920 tctttttctt-ttt-------tcttttgaaactcttgt i cerAty1.NW_012002954v1 C 0 I 14 s chlSab2.chr2 12310231 30 - 90373283 tctttttctt-ttt-------tcttttgaaattcttgt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 638129 30 + 1337817 tctttttctt-ttg-------tcttttgaaactcttgt i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19148788 23 + 50472720 --------tctttt-------ttacaaaaaacttttgt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2497394 22 + 13128814 --------tc-ttt-------ttaaaaaaaactcttgt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034927 29 - 14377064 --------tc-tttaaaaaaaaaaaaaaaaactcttgt i cebCap1.NW_016107322v1 C 0 C 0 s canFam3.chr31 11450029 27 + 39895921 ---ccatctt-ttt-------ccttccacaattcttgt i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e aotNan1.NW_018487195v1 6082617 32 + 9889416 I e otoGar3.GL873528 18334914 348 - 38779656 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=26452.000000 s hg38.chr21_GL383578v2_alt 44614 4 + 63917 agaa s panTro5.chr21 882111 4 + 33445071 agca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566760 4 + 46275980 agaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478884 4 - 13858734 agaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601066 4 + 32716333 agaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673605 4 - 185818997 ggaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159481679 4 - 192294377 ggaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5926505 4 + 9440265 ggaa i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12310261 4 - 90373283 agaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 638159 4 + 1337817 ggaa i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19148811 4 + 50472720 agaa i calJac3.chr21 C 0 I 4 s saiBol1.JH378168 2497416 4 + 13128814 agaa i saiBol1.JH378168 C 0 I 4 s cebCap1.NW_016107322v1 7034956 4 - 14377064 agaa i cebCap1.NW_016107322v1 C 0 C 0 s canFam3.chr31 11450056 4 + 39895921 agaa i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e aotNan1.NW_018487195v1 6082617 32 + 9889416 I e otoGar3.GL873528 18334914 348 - 38779656 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I e cerAty1.NW_012002954v1 5665817 14 + 21915920 I a score=14962.000000 s hg38.chr21_GL383578v2_alt 44618 6 + 63917 ---tcttt----g s panTro5.chr21 882115 10 + 33445071 ---tctttctttg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566764 10 + 46275980 ---tctttctttg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478888 10 - 13858734 ---tctttctttg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601070 10 + 32716333 ---tctttctttg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673609 6 - 185818997 ---tctttc---- i rheMac8.chr3 C 0 I 4 s macFas5.chr3 159481683 6 - 192294377 ---tctttc---- i macFas5.chr3 C 0 I 4 s macNem1.NW_012019910v1 5926509 6 + 9440265 ---tctttc---- i macNem1.NW_012019910v1 C 0 I 4 s chlSab2.chr2 12310265 6 - 90373283 ---tctttc---- i chlSab2.chr2 C 0 I 4 s manLeu1.NW_012107264v1 638163 6 + 1337817 ---tctttc---- i manLeu1.NW_012107264v1 C 0 I 4 s calJac3.chr21 19148819 6 + 50472720 ---tctttg---- i calJac3.chr21 I 4 C 0 s saiBol1.JH378168 2497424 6 + 13128814 ---tctttt---- i saiBol1.JH378168 I 4 C 0 s cebCap1.NW_016107322v1 7034960 6 - 14377064 ---tctttg---- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6082649 6 + 9889416 ---tctttg---- i aotNan1.NW_018487195v1 I 32 C 0 s canFam3.chr31 11450060 8 + 39895921 ttttcttt----- i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e otoGar3.GL873528 18334914 348 - 38779656 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I e cerAty1.NW_012002954v1 5665817 14 + 21915920 I a score=4239807.000000 s hg38.chr21_GL383578v2_alt 44624 502 + 63917 tttctagcattttgaaagtttgcaatgacgcttaatgtgt--------atccattgcattggccactcaatggg-tctt-tcaaattgaat----gactcttcaattcagagaaatttatagaaaaca--------aa-tttaactta-ttttttttctcctgttaaccttttggtatctcctattttg----tgaatattgtacctcctatactggtcctataattttcctatcttttctattttatatttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctactttaatattttagatttcaaaagtctctttc----ttatggtttttttttttttgtctttttttt--ttttttggtagaagtggcagttcttgttccatggatgaaat-aacttatc-tttttttctctgagaatattaataatgcttttcccccatctccttgaataga-ttcccttttcttcaagtttcatattgctgttggcttattttggttcgtttttcatgttagaaactt s panTro5.chr21 882125 503 + 33445071 tttctagcattttgaaagtttgcaatgacgcttaatgtgt--------atccattgcattggccactcaatggggtctt-tcaaattgaat----gactcttcaattcagggaaatttatagaaaaca--------aa-tttaactta-ttttttttctcctgttaaccttttggtatctcctattttg----tgaatattgtacctcctatactggtcctataattttcctatcttttctattttatatttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctactttaatattttagatttcaaaagtctctttc----ttatggtttttttttttttttgcctttttt--ttttttggtagaagtgacagttcttgttccatggatgaaat-aacttatc-tttttttctctgagaatattaataatgcttttcccccatctccttgaataga-ttcccttttcttcaagtttcatattgctgttggcttattttggttcgtttttcatgttagaaactt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14566774 494 + 46275980 tttctagcattttgaaagtttgcaatgacacttaatgtgt--------atccattgcattggccactcaatggggtctt-tcaaattgaat----gactcttcaattcagggaaatttatagaaaaca--------aa-tttaactta--tttttttctcctgttaaccttttggtatctcctattttg----tgaatattgtacctcctatactggtcctataattttcctatcttttctattttatatttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctactttaatattttagatttcaaaagtctctttc----ttatggtttttttttg--------tctttt--tttttggttagaagtggcagttcttgttccatggatgaaat-aacttatc-tttttttctctgagaatattaataatgcttttcccccatctccttgaataga-ttcccttttcttcaagtttcatattgctgttggcttattttggttcgtttttcatgttagaaactt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 478898 497 - 13858734 tttctagcattttgaaagttt-caatgacgcttaatgtgt--------atccattgtattggccactcaatggg-tcct-tcaaattgaat----gtctcttcaattcagggaaatttatagaaaaca--------aa-tttaactta--tttttttctcctgttaaccttttggtatctcctattttg----tgaatattgtacctcctatactggtcctataattttcctatcttttctattttatatttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctactttaatattttagatttcaaaagtctctttc----ttatggtttttttttt---ttgcctttttt--ttttttggtagaagtgacagttctttttccatggatgaaat-aacttatc-tttttttctctgagaatattaataatgcttttcccccatctccttgaataga-ttcccttttcttcaagtttcatattgctgctggcttattttggttcttttttcatgttagaaactt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601080 500 + 32716333 tttctagcattttgaaagtctgcaatgacgcttaatgtgt--------atccattgcattggccactcaatggg-tctt-tcaaattgaat----gactcttcaattcagggaaatttatagaaaaca--------aa-tttagctta-ttttttttctcctgttagccttttggtatgtcctattttg----tgaatattgtacctcctatactggtcctataattttcctatcttttctattttatatttagttttaaaa--tatcttcttttaatgtttttactgaatttttaatttctactttaatatttaagatttcaaaagtctctttc----ttacagtttttttttt--gtcatcattgtt--ttttttggtagaagtggcagttcttgttccatggatgaaat-aacttatc-ttttttcctctgagaatattaataatgattttcccccatctccctgaattga-ttcccttttctccaagtttcatattgctgttggcttattttggttcgtttttcatgttagaaactt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152673619 507 - 185818997 tttccagcattttgaaagtctgcaacaacgcttaaggtgt--------atcctttgcattggccactcagtggg-tctt-tcaaactgaat----gacccttcaattcagggaaatttatagaaaaca--------aattttaacttatttttttttcccctgttagccttttgatatctcctattttgtgaatgaatattgtacctcctctactggtcctataattttcctatcttttctattttatgtttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctaccttaatattttagatttcaaaagtctctttt----ttatgcattttgtttt--gtcgtcattgttg-ctttttggtagaagtggcagttcttgttccatggacgaaat-aacttatc-tatttttctctaagaatattaataatgattttcccccaactccttgaataga-ttcccttttcttcaagtttcatattgctgttggctggttttggtttgtttttcatgttagaaactt i rheMac8.chr3 I 4 C 0 s macFas5.chr3 159481693 507 - 192294377 tttccagcattttgaaagtctgcaacaacgcttaaggtgt--------atcctttgcattggccactcagtggg-tctt-tcaaactgaat----gacccttcaattcagggaaatttatagaaaaca--------aattttaacttatttttttttcccctgttagccttttgatatctcctattttgtgaatgaatattgtacctcctctactggtcctataattttcctatcttttctattttatgtttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctaccttaatattttagatttcaaaagtctctttt----ttatgcattttgtttt--gtcgtcattgttg-ctttttggtagaagtggcagttcttgttccatggacgaaat-aacttatc-tatttttctctaagaatattaataatgattttcccccaactccttgaataga-ttcccttttcttcaagtttcatattgctgttggctggttttggtttgtttttcatgttagaaactt i macFas5.chr3 I 4 C 0 s macNem1.NW_012019910v1 5926519 507 + 9440265 tttccagcattttgaaagtctgcaacaacgcttaaggtgt--------atcctttgcattggccactcagtggg-tctt-tcaaattgaat----gacccttcaattcagggaaatttatagaaaaca--------aattttaacttatttttttttcccctgttagccttttgatatctcctattttgtgaatgaatattgcacctcctctactggtcctataattttcctatcttttctattttatgtttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctaccttaatattttagatttcaaaagtctctttt----ttatgcattttgtttt--gtcgtcattgttg-ctttttggtagaagtggcagttcttgttccatggacgaaat-aacttatc-tatttttctctaagaatattaataatgattttcccccaactccttgaataga-ttcccttttcttcaagtttcatattgctgttggctggttttggtttgtttttcatgttagaaactt i macNem1.NW_012019910v1 I 4 C 0 s cerAty1.NW_012002954v1 5665831 506 + 21915920 tttccagcattttgaaagtctgcaacaacgcttaaggtgt--------atcctttgcattggccactcagtggg-tctt-tcaaattgaat----gacccttcaattcagggaaatttatagaaaaca--------aattttaactta-ttttttttcccctgttagccttttgatatctcctattttgtgaatgaatattgtacctcctctactggtcctataattttcctatcttttctattttatgtttagttttaaaa--taccttcttttaatgtttttacttaatttttaatttctactttaatattttagatttcaaaagtctctttt----ttatgcattttgtttt--gtcgtcattgttg-ctttttggtagaagtggcagttcttgttccatggacgaaat-aacttatc-tatttttctctaagaatattaataatgattttcccccaactccttgaataga-ttcccttttcttcaagtttcatattgctgttggctggttttggtttgtttttcatgttagaaactt i cerAty1.NW_012002954v1 I 14 C 0 s chlSab2.chr2 12310275 506 - 90373283 tttcaagcattttgaaagtctgcaacaacgcataatgtgt--------aacctttgcattggccactcagtggg-tctt-tcaaattgaat----gacccttcaattcagggaaatttatagaaaaca--------aattttaactta-ttttttttcccctgttagccttttgatatctcctattttgtgaatgaatattgtacctcctatactggtcctataattttcctatcttttctgttttatatttagttttaaaa--tatcttcttttaatgtttttactttatttttaatttctactttaatattttagatttcaaaagtctctttt----ttatgcgttttgtttt--gtcgtcattattg-ctttttggtagaagtggcagttcttgttccatggacaaaat-aacttatc-tttttttctctaagaatattaataataattttcccccaactccttgaataga-ttcccttttcttcaagtttcatattgctgttggctggttttggtttgtttttcatgttagaaactt i chlSab2.chr2 I 4 C 0 s manLeu1.NW_012107264v1 638173 506 + 1337817 tttccagcattttgaaagtctgcaacaacgcttaaggtgt--------attctttgcattggccactcagtggg-tctt-tcaaattgaat----gacccttcaattcagggaaatttatggaaaaca--------aattttaactta--tttttttcccccgttagccttttgatatctcctattttgtgaatgaatattgtacctcctatactggtcctataattttcctatcttttctattttatatttagttttaaaa--tatcttcttttaatgtttttacttaatttttaatttctactttaatattttagatttcaaaagtctccttt----tcatgcattttgtttt--gtcgtcattgttg-ctttttggtagaagtggcagttcttgttctatggatgaaat-aacttatcttttttttctctaagaatattaataatgattttcccccaactctttgaataga-ttctcttttcttcaagtttcatattgctgttggctggttttggtttgtttttcatgttagaaactt i manLeu1.NW_012107264v1 I 4 C 0 s calJac3.chr21 19148825 505 + 50472720 tttctagcattttagaagttttcaatgacacttaatgtgt--------ataaattgcactggccactcaatgag-tctt-tcaaatttaat----gacccttcaattcaggaaaagttacagaaaata--------aattttaactta--tttcttttctccgttagccttttggtaactcctatgttg----tgaatattgtacctcctatactggtgctataattttcctatcttttccattttatatttagttttagag--tatcttcttttaatgtttttacttaattttaaatttctactttaatatcttaaatttcaacagtctc-ttttgtcttacggtttt--tttt--gttgtcactgttgctttttcggtagaagtggcagttcttgttccatggatgaaataaacttacc-tttttttctctgagaatattgataatgatttccccccatctcctcaaatagatttcccttttcttcaagtttcaaattgctgttggcttgtttaggtttgtttttaatgttagagaatt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2497430 498 + 13128814 tttctagcattttagaagtttgcaatgacacttaatgcgt--------atccattgcactggccattcaatgag-tctt-tcaaatttaat----gacgcttcaatgcaggaaaatatacagaagata--------aattttaattta--ttt-ttttctctgttagccttttggtaactcctattttg----tgaatattgtacctcctatactggtgccataattttcctatcttttccattttata------tttagag--tatcttctttcagtgtttttacttaattttaaatttctactttaatattttaaatttcaacagtctctttttgtcttctgggtgt--tttt--gttgtcattgttgctttttcagcagaggtggcagttcttgttccatggaagaaataaacatacc-tttttttctctgagaatattgataatgatttcctcccatctccttgaataga-ttcccttttcttcaagttttatattgctgttggcttgtttgggtttgtttttaatgttagagactt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7034966 505 - 14377064 tttctagcattttagaagtttgcagtgacacttaatgtgt--------atccattgcactggccactcaatgag-tctt-tcaaatttaat----gacccttcaattcaggaaaatttacagaaaatg--------aattttaactta--ttttttttctttgttagccttttggtaactcctattttg----tgaatattgtacctcctatactggtgctataattttcctatcttttccattttatatttagttttagag--tatcttcttttagtgtttttactttattttagatttctactttaatattttaaatttcaacagtctctttttgtcttatgggttt--tttt--gttgtcattgttgcttttttggtagaggcggcagttcttgttccatggatgaaataaacatacc-tttttttctctgagaatattgataatgatttcctcccatctccttgaataga-tttccttttcttcaagtttcatatttctgttggcttgtttgggtttgtttttaatgttagggactt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6082655 504 + 9889416 tttctagcattttagaagtttgcaatgacacttaatatgt--------atccattgcactggccactaaatgag-tctt-tcaaatttaat----gacccttcaagtcaggaaaatttacagaaaata--------aattttaactta--ttt-ttttctctgttagccttttggtaactcctattttg----tgaatattttacctcctatactggtgctataattttcctatcttttccattttatatttagttttagag--tatcttcgtttagtgtttttacttaattttaaatttctactttaatattttaaatttcaacagtctctttttgtcttatggattt--tttt--gttgtcattgttgctttttcagtagaggtggcagttcttgttccatggatgaaataaacttacc-tttttttctctgagaatattgataatgatttccccccatctccttgaataga-ttcccttttcttcaagtttcatattgctgttggcttgtttgggtttgtttttaatgttagagattt i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11450068 502 + 39895921 ttcttaatattctaaaacttcatggtgatatgtaatgtgtatatattcatctattgtgttggccattcagtggg-tcccgttaagtggaatcttagatctttcacttcag-aaaatgcattgaaaaaattttttttaagtttagttct-tttctttttctctattaggcttttggtatctcttatttgg----tggatattatacctcctattctggtcttataagtttcttatcttttttattttatAGCTCATTTGAAAAATAATCAAcctttaacattttta-ttaaattttaatttctactttaatatttaaagacttaaaggtctctttg----ttg---------ttct--ctgatatttatt--ctct-----agagttgacactccttatttcatggatgaaat-agctcctc-t-ttttcctatgaaaatattaaccat-cttttttcctttctccttgtgtaaa-ttg--tttccttcaaattgttttccagtgtt--cttgtttatgctgatctttcatgttagagactc i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e otoGar3.GL873528 18334914 348 - 38779656 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=1450315.000000 s hg38.chr21_GL383578v2_alt 45126 156 + 63917 tcctcagatatcttgtgatttttggatgtatgcttatgtatgaggattgctcactataaagctgactggaatgtt--tgtatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------ctgttcttattagg-tgatctcataggggatc s panTro5.chr21 882628 156 + 33445071 tcttcagatatcttgtgatttttggatgtatgcttatgtatgaggattgctcactaaaaagctgactggaatgtt--tgtatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------ctgttcttattagg-tgatctcataggggatc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567268 156 + 46275980 tcctcagatatcttgtgatttttggatgtatgcttatgtatgaggattgctcactaaaaagctgactggaatgtt--tgtgtgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------ctgttcttattagg-tgatctcataggggatc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 479395 156 - 13858734 tcctcagatatcttgtgatttttggatgtatgcttgtgtatgaggattgctcactaaaaagctgactggaatgtt--tgtatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------ctgttcttattaga-tgatctcataggggatc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601580 156 + 32716333 tcctcagataccttgtgatttttggatgtatgcttatgtgtgaggattgctcactaaaaagctgactggaatgtt--tatatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaac-------------ctgttcttattagg-tgatctcataggggatc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674126 156 - 185818997 tcctgagaaatcttgtgatttttggatatatgcttatgtatgaggattgctcacgaaaaagctgattggaacgtt--tgcatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------atgttcttattagg-tgttctcataggggatc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482200 156 - 192294377 tcctgagaaatcttgtgatttttggatatatgcttatgtatgaggattgctcacgaaaaagctgattggaacgtt--tgcatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------atgttcttattagg-tgttctcataggggatc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927026 156 + 9440265 tcctgagaaatcttgtgatttttggatatatgcttatgtatgaggattgctcacgaaaaagctgattggaacgtt--tgcatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------atgttcttattagg-tgttctcataggggatc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5666337 156 + 21915920 tcctgagaaatcttgtgatttttggatatctctctctctctctggattgctcacgaaaaagctgattggaacgtt--tgcatgtatgtgtgtctc----------tctctctctctgattataggtttaactgtaaa-------------gtgttcttattagg-tgttttcataggctctc i cerAty1.NW_012002954v1 C 0 I 8 s chlSab2.chr2 12310781 169 - 90373283 tcctcagaaatcttgtgatttttggatatatgcttatgtatgaggattgctcactaaaaagctgattggaatgtt--tgcatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaagtgttgttattaggtgttcttattagg-tgttctcataggggatc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 638679 156 + 1337817 tcctgagaaatcttgtgatttttggatatatgcttatgtatgaggattgctcacgaaaaagctgattggaacgtt--tgcatgtatgtgtgtatg----------tgtgacttattgattataggtttaactgtaaa-------------gtgttcttattagg-tgttctcataggggatc i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19149330 148 + 50472720 ttttcaggtatcttgtgattttgggatgtatgcttatgtatgaggattcgtcactagaaagctgattggaatgtt----------tgtgtgtatg----------tgtgacttgttgattataggtttaaccgtaaa-------------gtatctttattggg-tggtctcataggggatt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2497928 148 + 13128814 ttctcaggtatcttgtgatttttggatgtatgcttatgtatgacgattagtcactaaaaagctgattagaatgtt----------tgtgtgtatg----------tgtgacttgttgattataggtttaaccgtaaa-------------gtgtttttattagg-tggtctcataggggatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7035471 148 - 14377064 ttctcaggtatcttgtgatttttggatgtatgcttatgtatgaggattagtctctaaaaagctgattagaatgtt----------tgtgtgtatg----------tgtaacttgttgattataggtttaaccataaa-------------gtgtttttattagg-tggtctcataggggatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083159 148 + 9889416 ttctcaggtatcttgtgatttttggatgtatgcttatgtatgaggattagtcactaaaaagctgattagaatgtt----------tgtgagtatg----------tgtgatttgttgattatagatttaaccgtgaa-------------gtgtttttattagg-tggtctcataggggatt i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18335262 157 - 38779656 TCCTCGGGCGTCTGGCCATTTGGGGATATATACTTATATATAAGGATTGGGCAATAAAAAACTGATTAAtatgtt--tgtatgtatgtatgtatg----------GGTGATTTATTGATTATAGGTTTAATTATAAA-------------GTGCTTTTAATAGGCTTGTCCCAATGGGGATC i otoGar3.GL873528 I 348 C 0 s canFam3.chr31 11450570 168 + 39895921 ttctcagatgtgtggtgatttttcgatgtatgtttatatacaaaacttgggcagtaaaaaatggattggcatgtttatatatgtatatgtgtatgtacgtgtgtttgtgatttgttgattgtaggtttaatcataag-------------gtgctcttaatagg-ctatctcattggggatc i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=68079.000000 s hg38.chr21_GL383578v2_alt 45282 8 + 63917 ctaaatca s panTro5.chr21 882784 8 + 33445071 ccaaatca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567424 8 + 46275980 ccaaatca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 479551 8 - 13858734 ccaaatca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601736 8 + 32716333 ccaaatca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674282 8 - 185818997 ccaaatca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482356 8 - 192294377 ccaaatca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927182 8 + 9440265 ccaaatca i macNem1.NW_012019910v1 C 0 C 0 s chlSab2.chr2 12310950 8 - 90373283 ccaaatca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 638835 8 + 1337817 ccaaatca i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19149478 8 + 50472720 caaaatca i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498076 7 + 13128814 c-aaatca i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7035619 8 - 14377064 caaagtca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083307 8 + 9889416 caaaatca i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18335419 8 - 38779656 CCAAATCA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11450738 8 + 39895921 tcaagtca i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I e cerAty1.NW_012002954v1 5666493 8 + 21915920 I a score=605990.000000 s hg38.chr21_GL383578v2_alt 45290 65 + 63917 ataggtttagatctttttctt----gtaaatagctcagattcttc-gat--aaaaattctctcatgcatgga s panTro5.chr21 882792 65 + 33445071 ataggtttagatctttttctt----gtaaatagctcagattcttc-gat--aaaaattctctcctgcatgga i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567432 65 + 46275980 ataggtttagatctttttctt----gtaaatagttcagattcttc-gat--aaaaattctctcctgcatgga i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 479559 65 - 13858734 ataggtttagatctttttctt----gtaaatagttcagattcttc-gat--aaaaattctctcctgcatgga i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601744 66 + 32716333 ataggtttagatctttttctt----gtcaatagttcagattcttcagat--aaaaattctctcctgcatgga i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674290 66 - 185818997 ataagtttagatgtttttctt----gtaaatagctcagattctccagat--aaaaattctctcctgcatgga i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482364 66 - 192294377 ataagtttagatgtttttctt----gtaaatagctcagattctccagat--aaaaattctctcctgcatgga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927190 66 + 9440265 ataagtttagatgtttttctt----ataaatagctcagattctccagat--aaaaattctctcctgcatgga i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5666501 66 + 21915920 ttaagtttagatgtttttctt----gtaaatagttcagattctccagat--aaaaattctctcctgcatgga i cerAty1.NW_012002954v1 I 8 C 0 s chlSab2.chr2 12310958 66 - 90373283 ataagtttagatgtttttctt----gtaaatagttcagattctccagat--aaaaattctctcctgcatgga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 638843 66 + 1337817 ataagtttagatgtttttctt----gtaaatagttcagattctccagat--aaaaattctctcctgcatgga i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19149486 66 + 50472720 ataggtttagatatttttctt----gtaaatggttcagattctccagat--aagaattctctcctgctcgga i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498083 66 + 13128814 ataggtatagatctttttctt----gtaaatggttcagattctccagat--aagaattatctcctgctcgga i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7035627 66 - 14377064 ataggtttagatctttttctt----gtaaatggttcagattctccagat--aagaattcccttctgctcgga i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083315 66 + 9889416 ataggtttagatctttttctt----gtaaatggttcagattatccagat--aagaattctctcctgctcaga i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18335427 72 - 38779656 ATATGTTCAGATCTTTTTCCTGCGAGTGACTAGTTTAGATTCGCCACATAAAAAAATCTTCCCTTACTTGGA i otoGar3.GL873528 C 0 I 35 s canFam3.chr31 11450746 49 + 39895921 ataggtttggatcttttttct----tc------ttcagattttccaaat-------------cctgtttgga i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=2143154.000000 s hg38.chr21_GL383578v2_alt 45355 273 + 63917 tggtataaatctgtctaccagcatccctagagctaggagga-aaaaataggactggggatttcaatataaatgtatagacttttacttagt-tcccatgttttcagtacagaatact-tggttcaaagttctggtattgg-tatctcttaattctgaatcgctctgcactacattccacattctaaatctctggtattctgccagtgtgaaagtggcacagatctttggctgagcagcatagaaggggaaatcttgaagtcttattgcctctcatac s panTro5.chr21 882857 273 + 33445071 tggtataaatctgtctaccagcatccctagagctaggagga-aaaaataggactggggatttcaatataaatgtatagacttttacttagt-tcccatgttttcagtacagaatact-tggttcaaaggtctggtattgg-tatctcttaattctgaatcgctctgcactacattccacattctaaatctctggtattctgccagtgtgaaagtggcacagatctttggctgagcagcatggaaggggaaaccttgaagtcttattgcctctcatac i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567497 273 + 46275980 tggtataaatctgtctaccagcatccctagagctaggagga-aaaaataggactggggatttcaatataaatatatagacttttacttagt-tcccatgttttcagtacagaatact-tggttcaaaggtctggtattgg-tatctcttaattctgaatcactctgcactacattccacattctaaatctctggtattctgccagtgcgaaagtggcacagatctttggctgagcagcgtggaaggggaaatcttgaagtcttattgcctctcatac i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 479624 273 - 13858734 tggtataaatctgtctaccagcatccctagagctaggagga-aaaaataggactggggatttcaatataaatatatagacttttacttagt-tcccatgttttcagtacagaatact-tggttcaaaggtctggtattgg-tatctcttaattctgaattgctctgcactacattccacattctaaatctctggtattctgccagtgtgaaagtggcacagatctttggctgagcagcatggaaggggaaatcttgaagtcttattgcctctcatac i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1601810 270 + 32716333 tggtataaatctgtctaccagcatccctggagctaggagga-aaaaataggactggggatttcaatataaatgtatagacttttacttggt-tcccatgttttcaatacagaatacc-tggttc-aaggtctggtattgg-tttctcttaatcctgaatcgctctgcactacattccacattctaaatctctggtattctgccagggtgaaagtggcacagatctttggctgagcagcacagaaggggaaatcttgaagtc--attgcttctcatat i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674356 272 - 185818997 tgatacaaatctgtctaccagcatccttggagctaggaggt-aaaaataggactgggaatttcatta-aaatgtatggacttttacttagt-tcccatgttttcaatacagaatacc-tggttcaaaggtctggtattgg-tatctcttaatcctgaatagcactgcactacattccacattctcaatctctggtattctgccagggtgcaagtggcacagatctttggctgagcagcacggaaggggaaatcttgaagtcttattgcttctcatgt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482430 272 - 192294377 tgatacaaatctgtctaccagcatccttggagctaggaggt-aaaaataggactgggaatttcatta-aaatgtatggacttttacttagt-tcccatgttttcaatacagaatacc-tggttcaaaggtctggtattgg-tatctcttaatcctgaatagcactgcactacattccacattctcaatctctggtattctgccagggtgcaagtggcacagatctttggctgagcagcacggaaggggaaatcttgaagtcttattgcttctcatgt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927256 273 + 9440265 tgatacaaatctgtctaccagcatccttggagctaggaggtaaaaaataggactgggaatttcatta-aaatgtatggacttttacttagt-tcccatgttttcaatacagaatacc-tggttcaaaggtctggtattgg-tatctcttaatcctgaatagcactgcactacattccacattctcaatctctggtattctgccagggtgcaagtggcacagatctttggctgagcagcacggaaggagaaatcttgaagtcttattgcttctcatgt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5666567 272 + 21915920 tgatataaatctgtctaccagcatccttggagctaggaggt-aactctctctctctctatttcatta-aaatgtatagacttttacttagt-tcccatgttttcaatctctctctct-ctcttgaaaggtctggtattgg-tatctcttaatcctgaatagctctgcactctctctctctctctcaatctctggtattccgccagggtgcaagtggcacagatctttggctaagcagcacggaaggggaaatcttgaagtcttattgcttctcatat i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 638909 272 + 1337817 tgatataaatctgtctaccagcatccttggagctaggagga-aaaaataggacggggaatttcatta-aaatgtatagacttttacttagt-tcccatgttttcaatacagaatacc-tggttgaaaggtctggtattgg-tatctcttaatcctgaatagctctgcactacgtttcacattctcaatctctggtattccgccagggtgcaagtggcacagatctttggctgagcagcacggaaggggaaatcttgaagtcttactgcttctcatat i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19149552 255 + 50472720 tggtataaatctgtctaccagcatccttggagctaggaggg-aaaaagaggactggagatttcaatataaatgtatagac-tttacttcat-tcccctgttttcaatacagaatacc-tggttcaaaa-tctggtattgg-tatctcttaatcctgaatagctctgcactagattccacattctaaatctctggtattctgc----------------cagatctttggatgagcagcatggaagaggaaatcttgaagtctaattgcttcttatat i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498149 255 + 13128814 tggtgtaaatctatctaccagcatccttggagctaggaggg-aaaaaggggactggggatttcaatataaatgtatagac-tttacttcgt-tcccctgttttcaatacagaatacc-tggttcaaaa-tctggtattgg-tatctcttaatcttgaatagctctgcactagattccacattctaaatatctggtattctgc----------------cagatctttggctgagcagcatggaagaggaaatcttgaagtctaattgcttctcatat i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7035693 255 - 14377064 tggtataaatctgtccaccagcatccctggagctaggaggg-aaaaagaggactggggatttcaatataaatgtatagac-tttacttcat-tcccctgttttcaatatagaatccc-tggttcgaaa-tctggtattga-tatctcttaatcctgagtagctctgtactaggttccacattctaaatctctggtattctgc----------------cagatctttggctgagcagcatggaagaggaaatcttgaagtctaattgcttctcatat i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083381 256 + 9889416 tggtataaatctgtctaccagcatccttggagctaggaggg-aaaaagaggactgggaatttcaatataaatgtatagac-tttacttcatcccccctgttttcaatacagaatacc-tggttcaaaa-tctgatattgg-tatctcttaatcctgaatagctctgcactagattccacattctaaatctctggtattctgc----------------cagatctttggctgagcagcatggaagaggaaatcttgaagtctaattgcttctcatat i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18335534 270 - 38779656 tggtgtaggtctgcctaccaacatctttagagctaggaagg--aaaataggatagggtctttctgtataaatgtgta-acttttacttagt-ttctatgttttcaatat--gacaac-tatttcagaggcctggtaatggttatttcctaattttttaaatctctgtacttcattctaaaagttaaatctcttgtcttctgcaagggtgggagtggcacagatctttgactgagcactgatggagaggaaaacttgaagcctaattgcatctcagat i otoGar3.GL873528 I 35 C 0 s canFam3.chr31 11450795 263 + 39895921 tgggataagcctgactgccagcatcctcagagctaggagag-ataaa--gaattggggatttcagtataaatgtataagcttttatttagg-ttctctgtttttagtatggattaccttatttcaaatgcctggtattgg-tatctcccaatcctaggaagctctctattatacctcaa----taaaatt----tattctacacaggtttaagcaacacagaaatttggccaagtagcatggaagaggaagtcttaaagtctgattg-ttctcaagt i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=610448.000000 s hg38.chr21_GL383578v2_alt 45628 76 + 63917 aggctttcaataagtcctcttattcctagttcacattcccttgtacttctacatgttaatggtctcccctagattc s panTro5.chr21 883130 76 + 33445071 aggctttcaataagtcctcttattcctagttcacattcccttgtacttctacatgttaatggtctcccctagattc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567770 76 + 46275980 aggctttcaataggtcctcttattcctagttcacattcccttgtacttctacatgttaatggtctcccctagattc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 479897 76 - 13858734 aggctttcaataagtcctcttattcctagttcacattcccttgtacttctacatgttaatggtctcccctagattc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602080 76 + 32716333 aggctttcaataagtcctcttattcctagttcacattcccttgtacttctacatgttaatggtctcccctagattc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674628 76 - 185818997 aggctttcaataagtcctcttattcccagttcacattcccttgtacttctacatgctaatgatctcccctagattc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482702 76 - 192294377 aggctttcaataagtcctcttattcccagttcacattcccttgtacttctacatgctaatgatctcccctagattc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927529 76 + 9440265 aggctttcaataagtcctcttattcccagttcacattcccttgtacttctacatgctaatgatctcccctagattc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5666839 76 + 21915920 aggctttcaataagtcctcTTATTCCCAGTTCACATTACCTTGTACTTCTGCATGCTAATGATCTCCCCTAGATTC i cerAty1.NW_012002954v1 C 0 I 505 s manLeu1.NW_012107264v1 639181 76 + 1337817 aggctttcaataagtcctcttattcccagttcacattcccttgtacttctacatgctaatgatctcccctagattc i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19149807 76 + 50472720 aaactttcaataagtcctcttatccttagttcacattcacttgtacttctacatgttaatagtttgccctggattc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498404 76 + 13128814 aaactttcaataagtcctcttatccttagttcacattcacttgtacttctacatgttaattgtttgccccagattc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7035948 72 - 14377064 aaactttcaataagccctcttatcc----ttcacattcacttgtacttctacatgttaatagtttaccttggattc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083637 76 + 9889416 aaactttcaataagtcctcttatccttagttcacattcacttgtacttctacatgttaataatttgccctggattc i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18335804 73 - 38779656 agattctcacca-gtcctcctattcttagctcacacccgtttgtatttctacatgtaaatggtctccccc--attc i otoGar3.GL873528 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=475650.000000 s hg38.chr21_GL383578v2_alt 45704 83 + 63917 atgagatttttgagag----tgtatgaagcaaattgaata----a---ttttttttt--caaatctacttactgctagctta----------------------------------------------------ggatttagcttcct s panTro5.chr21 883206 83 + 33445071 atgagatttttgagag----tgtatgaagcaaattgaata----a---ttttttttt--caaatttacttactgctagctta----------------------------------------------------ggatttagcttcct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567846 83 + 46275980 atgagatttttgagag----tgtatgaagcaaattgaata----a---ttttttttt--caaatttacttactgctagctta----------------------------------------------------ggatttagcttcct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 479973 83 - 13858734 atgagatttttgagag----tgtacgaagcaaattgaata----a---ttttttttt--caaatttacttactgctagctta----------------------------------------------------ggatttagcttcct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602156 86 + 32716333 atgagatttttgagag----tgtatgaaacaactagaatattttt---ttttttttt--caaatttacttactgctagctta----------------------------------------------------ggatttag-ttcct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674704 85 - 185818997 atgagatttttgagag----tgtatgaaacaaattgaata----c---tttttttttcccagatttacttactgctagctta----------------------------------------------------ggatttagcttcct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482778 85 - 192294377 atgagatttttgagag----tgtatgaaacaaattgaata----c---ttttttttccccagatttacttactgctagctta----------------------------------------------------ggatttagcttcct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927605 85 + 9440265 atgagatttttgagag----tgtatgaaacaaattgaata----c---ttttttttttccagatttacttactgctagctta----------------------------------------------------ggatttagcttcct i macNem1.NW_012019910v1 C 0 C 0 s manLeu1.NW_012107264v1 639257 88 + 1337817 atgagatttttgagag----tgtatgaagcaaattgaata----cttttttttttttttcagatttacttactgcctgctta----------------------------------------------------ggatttagcttcct i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19149883 79 + 50472720 atgagattttcaagag----aatatgaagcaaatcaa-----------ttttttttt--caaatttacttacccctacctta----------------------------------------------------ggatttagcttcct i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498480 84 + 13128814 atgagattttcaagag----aatatgaagcaaatagaatt----t--ttgttttttt--caaatttacttactcctacctta----------------------------------------------------ggatttagcttcct i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036020 83 - 14377064 atgagattttcgagag----aatatgaagcaaatcgaatt----t---ttttttctt--cagatttacttactcctacctta----------------------------------------------------ggatttagcttcct i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083713 81 + 9889416 atgagattttcgagag----aatatgaagcaaatcgaat---------ttttttttt--caaatttacttactcctacctta----------------------------------------------------ggatttagcttcct i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18335877 135 - 38779656 atgaatttttggagaaagactatatagaacaaattgaatt----a---ctttt------cacatttattcattgctagtttaTTCATGCACATTTGCACAAATGTTGCACATTTATTCATGGCAAGCTAATTTGGGATTTAGCTTGCT i otoGar3.GL873528 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e dasNov3.JH568778 646046 7418 - 6883506 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e cerAty1.NW_012002954v1 5666915 505 + 21915920 I a score=675057.000000 s hg38.chr21_GL383578v2_alt 45787 98 + 63917 ggggtctccaaattatttcttacttattctgccttcccaaatgttgtgattattgttttt--ttccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT s panTro5.chr21 883289 98 + 33445071 ggggtctccaaattatttcttacttattctgccttcccaaatgttgtgattattgttttt--tcccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14567929 98 + 46275980 ggggtctccaaattatttcttacttattctgccttcccaaatgttgtgattattgttttt--ttccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480056 98 - 13858734 ggggtctccaaattatttcttacttattctgccttcccaaatgttgtgattattgttttt--tcccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602242 98 + 32716333 ggggtctccaaattatttcttacttattctgccctcccaaatgttgtgattatctttttt--ttccctatgctgtttttc---------TA-------AGTTGAAAAACCCCTTAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674789 100 - 185818997 ggggtctccaaattatttcttatttattctgccttcccaaatgttgtgattattgttttttcttccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482863 100 - 192294377 ggggtctccaaattatttcttatttattctgccttcccaaatgttgtgattattgttttttcttccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927690 100 + 9440265 ggggtctccaaattatttcttatttattctgccttcccaaatgttgtgattattgttttttcttccctatgctgtttttc---------TA-------AGTTGGAAAACCCCTTAT i macNem1.NW_012019910v1 C 0 C 0 s manLeu1.NW_012107264v1 639345 100 + 1337817 ggggtctccaaattatttcttatttattctgccttcccaaatgttgtgattattgttttttcttccctatgctgtttgtc---------TA-------AGTTGGAAAACCCCTTAT i manLeu1.NW_012107264v1 C 0 I 306 s calJac3.chr21 19149962 94 + 50472720 gggatctctaaatcatttcttacttactttgccttccCAGAT----TGATTATCATTTTC--ATTCATATGCTGTGTTTC---------TA-------AGTTGGAAAACCCCTTAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498564 94 + 13128814 gggatctttaaatcgtttcttacttattctgccttccCAGAT----TGATTATTATTTTC--ATTCATATGCTGTTTTTC---------TA-------AGTTGGAAAACCCCTTAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036103 94 - 14377064 gggatctctaaatcatttcttacttattctgccttccCAGAT----TGATTATCATTTTC--ATTCATATGCTGTTTTTC---------TA-------AGTTGGAAAACCCCTTAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083794 94 + 9889416 gggatctctaaataatttcttacttattctgccttccCAGAT----TGATTATCATTTTC--ATTCATATGCTGTTCTTC---------TA-------AGTTGGAAAACCCCTTAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18336012 106 - 38779656 AGGGTCTCTAAATCATTTATTATTTATTCTGCCTTCCCATATTTTG-GGCTGTCATATTT--TTTCTCATACGGTATTTCTTGTGATTTTA-------AGTTTTAAAAACTTTTCT i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 653464 99 - 6883506 GGGGTCTTTAGGTCATTTATTACTCATTTTGCTTTCCTAAATTCTGTGGATATTATTTTC--TTTTATGTTCTTTATTCT---------TGTGAGTTTAGTTTGAAAATT------ i dasNov3.JH568778 I 7418 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e cerAty1.NW_012002954v1 5666915 505 + 21915920 I a score=19357.000000 s hg38.chr21_GL383578v2_alt 45885 3 + 63917 ATT s panTro5.chr21 883387 3 + 33445071 ATT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568027 3 + 46275980 ATT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480154 3 - 13858734 ATT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602340 3 + 32716333 ATT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674889 2 - 185818997 -TT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482963 2 - 192294377 -TT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927790 2 + 9440265 -TT i macNem1.NW_012019910v1 C 0 C 0 s calJac3.chr21 19150056 3 + 50472720 ATT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498658 3 + 13128814 ATT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036197 3 - 14377064 ATT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083888 3 + 9889416 ATT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18336118 3 - 38779656 GTT i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 653563 3 - 6883506 ATT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e manLeu1.NW_012107264v1 639445 306 + 1337817 I e cerAty1.NW_012002954v1 5666915 505 + 21915920 I a score=71928.000000 s hg38.chr21_GL383578v2_alt 45888 11 + 63917 GACACTTAAAA s panTro5.chr21 883390 11 + 33445071 GACACTTAAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568030 11 + 46275980 GACACTTAAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480157 11 - 13858734 GACACTTAAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602343 11 + 32716333 GACACttaaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674891 11 - 185818997 GACACTTACAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482965 11 - 192294377 GACACTTACAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927792 11 + 9440265 GACACTTACAT i macNem1.NW_012019910v1 C 0 C 0 s manLeu1.NW_012107264v1 639751 11 + 1337817 GACACttaaat i manLeu1.NW_012107264v1 I 306 C 0 s calJac3.chr21 19150059 11 + 50472720 GTCATTTAAAA i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2498661 11 + 13128814 GTCACTTAAAA i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7036200 11 - 14377064 GTCACTTAAAA i cebCap1.NW_016107322v1 C 0 I 1 s aotNan1.NW_018487195v1 6083891 11 + 9889416 GTCACTTAAAA i aotNan1.NW_018487195v1 C 0 I 1 s otoGar3.GL873528 18336121 11 - 38779656 AACActtaaaa i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 653566 11 - 6883506 GACATGTAAGA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e cerAty1.NW_012002954v1 5666915 505 + 21915920 I a score=319235.000000 s hg38.chr21_GL383578v2_alt 45899 34 + 63917 TTGTATTATGAAAATTTTCAAGCATGTACAaaat s panTro5.chr21 883401 34 + 33445071 TTGTATTATGAAAATTTTCAAGCATGTACAaaat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568041 34 + 46275980 TTGTATTATGAAAATTTTCAAGCATGTACAaaat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480168 34 - 13858734 TTGTATTATGAAAATTTTCAAGCATGTACAaaat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602354 34 + 32716333 ttgtattatgaaaattttcaaacatgtacaaact i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674902 34 - 185818997 TTGTATCATGAAAATTTTCAAGCATGTACAaaat i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159482976 34 - 192294377 TTGTATCATGAAAATTTTCAAGCATGTACAaaat i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927803 34 + 9440265 TTGTATCATGAAAATTTTCAAGCATGTACAaaat i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5667420 34 + 21915920 TTGTATCATGAAAATTTTCAAGCATGTACAAAAT i cerAty1.NW_012002954v1 I 505 I 206 s manLeu1.NW_012107264v1 639762 34 + 1337817 ttgtatcatgaaaattttcaagcatgtacaaaat i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19150071 34 + 50472720 TTGTATTATGAAAatttttaagcatgtacaaaat i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2498673 34 + 13128814 ttgtattatgaaaaatttcaagcatgtacaaatt i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7036212 34 - 14377064 ttgtattatgaaaattttcaagcatgtacaaaat i cebCap1.NW_016107322v1 I 1 C 0 s aotNan1.NW_018487195v1 6083903 34 + 9889416 TTGTATTATGAAAATTTTCAAGCATGTACAaaat i aotNan1.NW_018487195v1 I 1 C 0 s otoGar3.GL873528 18336132 34 - 38779656 ttctactggagaaatttttaaatatgcacaaaat i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 653577 34 - 6883506 ttttattatggaaattttcaaactttctcaaagt i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=1518177.000000 s hg38.chr21_GL383578v2_alt 45933 215 + 63917 ttttaagcatgtaaaaagtacagagataataataataataagcttctatgtac---tcactt---agcttcaacaagcaccaatatattgtcaatgtattaatcaacc-cctcttctcctcctattccaacttcc-------cactagaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgctcacattaatgtaacaggtaaagactt---aaa s panTro5.chr21 883435 215 + 33445071 ttttaagcatgtaaaaagtacagagataataataataataagcttctatgtac---tcactt---agcttcaacaagcaccaatatattgtcaatgtattaatcaacc-ccccttctcctcctattccaacttcc-------cattagaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgttcacattaatgtaacaggtaaagactt---aaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568075 215 + 46275980 ttttaagcatgtaaaaagtacagagataataataataataagcttctatgtac---tcactt---agcttcaacaagcaccaatatattgtcaatgtattaatcaacc-ccccttctcctcctattccaacttcc-------cattagaatgttttaaaacaaatcctagaca-catataatttaatttatacgtaatgttcacattaatgtaacaggtaaagactt---aaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480202 214 - 13858734 ttttaagcatgtgaaaagtacagagataataataataataagcttctatgtac---tcactt---agcttcaacaagcaccaatatattgtcaatgtattaatcaacc-ccccttctcctcctattccaacttcc-------cactagaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgttcacattaa-gtaacaggtaaagactt---aaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602388 218 + 32716333 ttttaagcatgtaaaaagtacagagataataataataataagcttccatgtac---tcagtt---agcttcaacaagtaccagtataatgtcaatgtattaaccaacc-cctcttctcctcctattccaacttcc-------caatagaatgttttaaaacaaatcctagata-cacataatttaatttacaggtaatgttcatgttaatataacaggtaaagacttaaaaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152674936 210 - 185818997 ttttaagcatgtaaaaagtacagagatgat---aataataagcttccat-tac---tcactt---agcttcaacaagtaccaatatattgtcaacgtattaaccaacc-ccccttctcctcctattccaacttcc-------cactacaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgttcacactaatataacaggtaaagactt----aa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159483010 211 - 192294377 ttttaagcatgtaaaaagtacagagatgat---aataataagcttccat-tac---tcactt---agcttcaacaagtaccaatatattgtcaacgtattaaccaacc-ccccttctcctcctattccaacttcc-------cactacaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgttcacactaatataacaggtaaagactt---aaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5927837 211 + 9440265 ttttaagcatgtaaaaagtacagagatgat---aataataagcttccat-tac---tcactt---agcttcaacaagtaccaatatattgtcaacgtattaaccaacc-ccccttctcctcctattccaacttcc-------cactacaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgttcacactaatataacaggtaaagactt---aaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5667660 214 + 21915920 ttttaagtatgtaaaaagtacagagataataacaataataagcttccac-tct---ctctct---ctcttcaacaagtaccaatatattgtcaacgtattaaccaact-ccccttctcctcctattccaacttcc-------cactacgatgttttaaaacaaatcctagaca-cacataatttaactctctctctctcttcacactaatataataggtaaagactt---aaa i cerAty1.NW_012002954v1 I 206 C 0 s manLeu1.NW_012107264v1 639796 214 + 1337817 ttttaagtatgtaaaaagtacagagataataacaataataagcttccat-cac---tcactt---agcttcaacaagtaccagtatattgtcaacgtattaaccaacc-ccccttctcctcctattccaacttcc-------cactacaatgttttaaaacaaatcctagaca-cacataatttaatttataggtaatgttcacactaatataataggtaaagactt---aaa i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19150105 211 + 50472720 gtttaagcatgtaaaatatgcagagataat---aataataagcttccatgtac---tcattt----tcttcaacaagtaccaatatattgtcgatatgtgaaccaccctccccttcttttcctattccaacatcc-------cgctagaatgttttaaaacaaatcctag--a-cacataatttaatttgtaGCTAATGCTTATGCTAATAGAACAAGAAAAGACTT--AAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498707 209 + 13128814 ttttaagcatgttaaaaatacagag---at---aataataagcttccatgtac---tcattt----gcttcaacaaataccaatatattgtcaatatgataaccacccttcccttctcttcctattccaacatgc-------cactagaatgttttgaaacaaatcctagaca-cacataatttaatttgtagctaatgctcatgctaatagaacaagtaaagactt---aaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036246 207 - 14377064 ttttaagcatgtaaaaaat--agag---at---aataataagcttccatgtac---tcattt----gcttcagcaagtaccaatatattgtcagtatgttaaccaccttccccttctcctcctattccagcatcc-------cactagaatgttttaaaacaaatcctagaca-cacataattcaatttgtagctaatgctcatgctaatagaacaagtaaagactt---aaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6083937 212 + 9889416 ttttaagcatgtaaaaaatacagagataat---aataataagctaccatgtac---tcattt----gcttcaacaagtaccaatatattgtcaatatgttaaccaccctgcccttgtcctcctattccaacatcc-------cactagaatgttttaaaacaaatcctagaca-cacataatttaatttgtagctaatgctcatgctaatagaacaagtaaagactt---aaa i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18336166 189 - 38779656 --------------------ttgagataatag-tataatcaaattccatatactcatcactc---aggttcaacaaatacaaaaatataaccaatttggt--tttacc-tccattgcctccccactctaacttac-------cactagaaaatttttaaaaatg---tagatt-catatcatttcatttgtaaataatgctcatgttaatccagca--catagactt----ga i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 653611 205 - 6883506 ---------------------aaagagaatag-tacaaaaaacctcaatgtat---tcatctctgagcttcaatgaataccaccatactggcaatttggtttcacctctctccctccctttcttctccaccatcctaatcctcactggaatattgtacaacaaatcccagacatcatgcaattttatctgtaaagatgccacatgtttatctaacaggtaaggactt---taa i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e canFam3.chr31 11451058 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=857817.000000 s hg38.chr21_GL383578v2_alt 46148 125 + 63917 aaacctaattgtaaaacaacat---------------cagtaattatttaagat-aacctagtaccaaaatccat-ttcaattctctctgataatcagaaaaagttgtc-------------------ttcttacTTTTCTTTC-TTTTTT-----AAAA--------------------------AAATTAG s panTro5.chr21 883650 125 + 33445071 aaacctaattgtaaaacaacat---------------cagtaattatttaatat-aacctagtaccaaaatccat-ttcaattctctctgataatcagaaaaagttgtc-------------------ttgttacTTTTCTTTC-TTTTTT-----AAAA--------------------------AAATTAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568290 125 + 46275980 aaacctaaTTGTAAAACAACAT---------------CAGTAATTATTTAATAT-AACCTAGTACCAAAATCCAT-TTCAATTCTCTCTGATAATCAGAAAAAGTTGTC-------------------TTGTTACTTTTCTTTC-TTTTTT-----AAAA--------------------------AAATTAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480416 125 - 13858734 aaacctaattgtaaaacaacat---------------cagtaattatttaatat-aacctagtaccaaaatccat-ttcaattctctctgataatcagaaaaagttgtc-------------------ttgttacTTTTCTTTC-TTTTTT-----TAAA--------------------------AAATTAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602606 126 + 32716333 aaacctaattgtaaaacaacat---------------cagtaattatttaatat-aatctagtaccaaaatccat-ttcaattctctctgataatcagaaaaagttgtc-------------------ttgttaTTTTTCTTTC-TTTTTT----AAAAA--------------------------AAATTAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152675146 137 - 185818997 aaacctaattgtaaagcagcatacgcaacaaaactggcagtaattatttaatataaatctaataccaaaatccac-ttctat----tctgattatcagaaaaagttgtc-------------------ttgttacTTTTCTTTC-TTTTCT-----AAAA--------------------------ACATTAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159483221 137 - 192294377 aaacctaattgtaaagcagcatacgcaacaaaactggcagtaattatttaatataaatctaataccaaaatccac-ttctat----tctgattatcagaaaaagttgtc-------------------ttgttacTTTTCTTTC-TTTTCT-----AAAA--------------------------ACATTAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5928048 137 + 9440265 aaacctaattgtaaaacagcatacgcaacaaaactggcagtaattatttaatataaatctaataccaaaatccac-ttctat----tctgattatcagaaaaagttgtc-------------------ttgttacTTTTCTTTC-TTTTCT-----AAAA--------------------------ACATTAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5667874 133 + 21915920 aaacctaattgtaaaacagcatactcaacaaaactggcagtaattatttaatat-aatctaataccaaaatccac-ttctat----tctgattatcagaaaaagttgtc-------------------ttgttacTTTTCTTTC-TTTTTT-----AAAA--------------------------AC---AG i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640010 128 + 1337817 aaacctaattgtaaaacagcatactcaacaaaactggcagtaattatttaatat-aatctaataccAAAATCCAC-TTCTAT----TCTGATTATCAGAAAAAG------------------------TTGTTACTTTTCTTTC-TTTTTT-----AAAA--------------------------AC---AG i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19150316 167 + 50472720 AAATATAATTGTAAAGCAACATATGCTACAAAACTAGCATTAACTATTTAATAT-AATCCAATACCCAAATCCAT-TCCAATTCTCTCTGGTTATCAGAAAATTTTGTG-------------------TTGTTACTTTGtttttatttttt-----aaaaaaattaGAATCTTTATATTGTCTAAAAAATTAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2498916 149 + 13128814 aaacataattgtaaagcaacatatgccacaaaactagcagtaattatttaatat-aatccaatacccaaatccat-tccaattttctctggttatcagaaaatgttgtc-------------------ttgttacttttatttcttttttt--------------------tttttttttttt---AAATTAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036453 141 - 14377064 aaacttaattgtaaagcaccatatgccacaaaactagcagtaattatttaatat-aatccaatacccaaatccat-tccagttttctctggttatcagaaaatgttgtc-------------------ttgttacTTTTATTTCTTTTTTT-----AAAA--------------------------AAATTAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084149 138 + 9889416 aaacgtaattgtaaagcaacatatgccacaaaactagcagtaattatttaatat-aatccaatatccgaatccat-tccaattctctctggttatcagaaaatgttgtc-------------------ttgttacTTTTA-----TTTTTT-----AAAAAA------------------------TAATTAG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18336355 136 - 38779656 aaacatgattgcaaagcaac-----taacaaaattaacagttattattgaatat-aatctgatgcccaaatccat-TGCAATTCTCTCT----ATTACAAAAAGTTGGC-------------------ATTTTGATTTTCTTCT-TTTTTTAAGAAAAAA--------------------------AAATTGA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11451058 139 + 39895921 aaacct-------------catacccaaccaaATTAACGCTAATTATTTAATGT-ATTATAATGCCCAAATCTGTGTTTAAA----TCT----ATCACAAAAATTAGTCCtttattttttattttcttttatcctttttttttt-tttttt-----tttt--------------------------GGATCAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 653816 124 - 6883506 ----aaaattggaaatcataacacccaacaaaattaacaataattatttaatat-aatctaatacccaagcctactttcaaattttcctgattgagagaaaa-gatgtc-------------------tttttgtttttttcta-ttcag------------------------------------------- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16849838 2689 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=1139441.000000 s hg38.chr21_GL383578v2_alt 46273 126 + 63917 AATCTTCATACTGTCTGGCTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTGTATCTCCACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACAtgacca s panTro5.chr21 883775 126 + 33445071 AATCTTCATACTGTCTGGCTGATCAGCGAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTGTATCTCCACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACAtgacca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568415 126 + 46275980 AATCTTCATACTGTCTGGCTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTGTATCTCCACCCATTTCTGTGGAAGGTTGGTGGCATAGGTCGACAtgacca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480541 126 - 13858734 AATCTTCATACTGTCTGGCTGATCAGCAAGCAAGCATGGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTGTATCTCCACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACAtgacca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602732 126 + 32716333 AATCTTCATACTGTCTGGTTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTCTATCTCTACCCACTTCTGTGAAAGGTTGGTGGCATAGGTAGACATGACCA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152675283 126 - 185818997 AATCTTCATACTGTCTTGTTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTCTATCTCTACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACATGACCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159483358 126 - 192294377 AATCTTCATACTGTCTTGTTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTCTATCTCTACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACATGACCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5928185 126 + 9440265 AATCTTCATACTGTCTTGTTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGA-AATATGACTGCTCTATCTCTACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACATGACCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5668007 126 + 21915920 AATCTTCTCTCTCTCTCTCTGATCAGCAAGCAAGCATAATTGACCTAGTCATCAAACATGAGA-AATACTCTCTCTCTCTCTCTACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACATGACCA i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640138 124 + 1337817 AATCTTCATACTGTCTTGTTGATCAGCAAGCAAGC--AGTTGACCTAGTCATCAAACATGAGA-AATATGACTGCTCTATCTCTACCCATTTCTGTGGAAGGTTGGTGGCATAGGTAGACATGACCA i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19150483 109 + 50472720 AATCTTTATACTTTATACTTGATCAGCAAGCAAGCATAGTTGATCGAGTCATCAAACATGAGGCCATATGATTGCTCTATCTCTACCCATTTGTGTGGAGga------------------gtgacca i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2499065 109 + 13128814 AATCTTTATACTGTCTGGTTGATCAGCAAGTAAGCATAGTTGACCCAGTCATCAAACATGAGGCCATGTGATTGCTCTATCTCTACCCATTTGTATGGAGga------------------gtgacca i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036594 109 - 14377064 AATCTTTATACTGTCGGGTTGATCAGCAAGCAAGCATAGTTGACCCAGTCATCAAACATGAGTCCATATGATTGCACTGTCTCTACCCATTTGTGTGGAGga------------------gtgacca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084287 109 + 9889416 AATCTTTATACTGTCTGGTTGATCAGCAAGCAAGCATAGGTGACCCAGTCATCAAACATGAGGCCCTATGATTGCTCTGTCTCTACCCATTTGTGTGGAGga------------------gtgacca i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16852527 127 + 47401472 AATCTTCACACTTTCTGATTGATCAACAGGCAAGCATAATTGACCCAATCATCAACCATGAGGAAGTATGACTGCTCTGTCTCTACTCATTTTTGGGGAGGTGTGTTGGCATAGGCAGGCAtgacca i micMur3.chr31 I 2689 I 424 s otoGar3.GL873528 18336491 123 - 38779656 AATTGTCATACTTTCTAGTTGATTAA----CAAGCACAGTTGACCCACTCATCCACCGTGAAGAAATACAATTGCTCTGTCTCTACTCATTTCTGGGGAGGAATGTTAGCATAGGTAaggattacca i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11451197 123 + 39895921 AATCA-CATGATAACTGGTTGAGCAGCAAATAAGCATAGTTGACCCAGTCATCAAACTTGAGGGAATATGACTCTACTGTTTCTGTTCATTTCTGTGGAGGA---GTGGCAGAGAtaggcatgacta i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 653940 120 - 6883506 gatcTTCATTCTGTCTTGTTAATTAACAAGTGGGCATAACTGAACTAATAATCAAATAGGA---AATATGTCTGGACTACCTCTACCTATTTTTGTGGAAGA---GTGGCATTTGTAGGCATGTCC- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=3266009.000000 s hg38.chr21_GL383578v2_alt 46399 390 + 63917 catgc-ccacgacca-cttcagg-agtcttcgtttaagtcttttacccaagcacatttgttgacagtgtctttagtcatgctcagaagtgttatgatttggacaagaaattatgtagtc--actctaCGCATATGGACAGGTCCTATCACCAATGGAGAAAGCCCATAAGGAATTTTAA----TACTTTA-----TTTTCTCTACAAGTCTTAGGTCTTGCAAAGGCCCTACTTTT----TAAAATGGGCTCAC-AA-TATCCATTCCTCTTCT---TTTACCCACTTCCCATTTGAAGAGGG---------GATTGAATAGTCAGGTTACTTTCCTTTATA-G---T--GTGTAGCATGCTCT-TGAG-GTATTGCTCAATGTCTTCAGTCCAGAACTTCAGTCTGGGCAT--GGAATTCTCATTCTACAA-- s panTro5.chr21 883901 390 + 33445071 catgc-ccacgacca-cttcagg-agtcttcgtttaagtcttttacccaagcacatttgttgacagtgtccttagtcttgctcagaagtgttatgatttggacaagaaattatgtagtc--actctaCGCATATGGACAGGTCCTATCACCAATGGAGAAAGCCCATAAGGAGTTTTAA----TACTTTA-----TTTTCTCTACAAGTCTTAGGTCTTGCAGAGGCCCTACTTTT----TAAAATGGGCTCAC-AA-TATCCATTCCTCCTCT---TTTACCCACTTCCCATTTGAAGAGGG---------GATTGAATAGTCAGGTGACTTTCCTTTATA-G---T--GTGTAGCATGCTCT-TGAA-GTATTGCTCAATGTCTTCAGTCCAGAACTTCAGTCTGGGCAT--GGAATTCTCATTCTACAA-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568541 389 + 46275980 catgc-ccacgacca-cttcagg-agtcttcgtttaagt-ttttacccaagcacatttgttgacagtgtccttagtcatgctcagaagtgttatgatttggacaagaaattatgtagtc--actttaCACATATGGACAGGTCCTATCACCAATGGAGAAAGCCCATAAGGAGTTTTAA----TACTTTC-----TTTTCTCTACAAGTCTTAGGTCTTGCAAAGGCCCTACTTTT----TAAAATGGGCTCAC-AA-TATCCATTCCTCCTCT---TTTACCCACTTCCCATTTGAAGAGGG---------GATTGAATAGTCAGGTGACTTTCCTTTATA-A---T--GTGTAGCATGCTCT-TGAA-GTATTGCTCAATGTCTTCAGTCCAGAACTTCAGTCTGGGCAT--GGAATTCTCATTCTACAA-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 480667 390 - 13858734 catgc-ccacgacca-cttcagg-agtcttcgtttaagtcttttacccaagcacatttgttgacagtgtccttagtcatgctcagaagtgttatgatttggacaagaaattatgtagcc--actctaCGCATATGGACAGGTCCTATCACCAATGGAGAAAGCCCATAAGGAATTTTAA----TACTTTA-----TTTTCTCTGCAAGTCTTAGGTTTTGCAAAGGCCCTGCTTTT----TAAAATGGGCTCAC-AA-TATCCATTCCTCCTCT---TTTACCCACTTCCCATTTGAAGAGGG---------GATTGAATAGTCAGGTGACTTTCCTTTATA-G---T--GTGTAGCATGCTCT-TGAG-GTATTGCTCGATGTCTTCAGTCCAGAACTTCAGTCTGGGCAT--GGAATTCTCATTCTACAA-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1602858 390 + 32716333 CATGC-CCATGACCA-CTTCAGG-AGTCTTCGTTTAAGCCTTTTACCCAAGCACATTTATTAACAGTGCCCTTGGTCATGCTCAGAAGTGTTATGATTTGGACAAGAAATTATGTAGTC--ACTCTATGCATATGGACAGGTCATATCACCAATGGAGAAAGCCCATAAGGAATTTGAA----TACTTTA-----TTTTCTCTACAAGTCTTAGGTCTTGCAAAGGCCCTACTTTT----TAAAATGGGCTCAT-AA-TATCCATTCTTCCTCT---TTTACCCACTTCCTATTTGAAGAGGG---------GATTGAATTGTCAGGTGACTTTCCTTTATA-A---T--GTGTAGCATGCTCT-TGAG-GTATTGCTCAATGTCTTCAGTCCAGAACTTCAGTCTGGGCAT--GGAGTTCTCATTCTACAA-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152675409 388 - 185818997 CATGC-CCAT-ATCA-CTTCCGG-AGTCTTCATTTAAGCCTTTTACCCAAGCACATTTATTAACAGTGTCCTTGGTCATGCTCTGAAGTGTTATGATTTGGACAAGAAATTATGTAGTC--ACTCTATGCATATGGACAGGTTCTATCCCCAATGGAGAAAGCCCGTAAGAAATTTTAA----TACTTTA-----TTTTCTCTACACATCTTAGGTTTTGTAAAGGACCTACTTTT----TAAAATGGGCTTGT-GA-TTTCCATT-TTCCTCT---TTTACCCACTTCCTCTTTGAAGAGGG---------GATTGAATAGTCAGGTGAATTTCCTTTATA-A---T--GTGTAGCATGCTCT-TGAG-ATACTGCTCCATGTCTTCAGTCCAGAACTTCAGTTTGGGCAT--GGAATTCTCATTCTACAA-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159483484 388 - 192294377 CATGC-CCAT-ATCA-CTTCCTG-AGTCTTCATTTAAGCCTTTTACCCAAGCACATTTATTAACAGTGTCCTTGGTCATGCTCTGAAGTGTTATGATTTGGACAAGAAATTATGTAGTC--ACTCTATGCATATGGACAGGTTCTATCCCCAATGGAGAAAGCCCGTAAGAAATTTTAA----TACTTTA-----TTTTCTCTACACATCTTAGGTTTTGTAAAGGACCTACTTTT----TAAAATGGGCTTGT-GA-TTTCCATT-TTCCTCT---TTTACCCACTTCCTCTTTGAAGAGGG---------GATTGAATAGTCAGGTGAATTTCCTTTATA-A---T--GTGTAGCATGCTCT-TGAG-ATACTGCTCCATGTCTTCAGTCCAGAACTTCAGTTTGGGCAT--GGAATTCTCATTCTACAA-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5928311 388 + 9440265 CATGC-CCAT-ATCA-CTTCCGG-AGTCTTCATTTAAGCCTTTTACCCAAGCACATTTATTAACAGTGTCCTTGGTCGTGCTCTGAAGTGTTATGATTTGGACAAGAAATTATGTAGTC--ACTCTATGCATATGGACAGGTTCTATCCCCAATGGAGAAAGCCCGTAAGAAATTTTAA----TACTTTA-----TTTTCTCTACACATCTTAGGTTTTGTAAAGGACCTACTTTT----TAAAATGGGCTTGT-GA-TTTCCATT-TTCCTCT---TTTACCCACTTCCTCTTTGAAGAGGG---------GATTGAATAGTCAGGTGAATTTCCTTTATA-A---T--GTGTAGCATGCTCT-TGAG-ATACTGCTCCATGTCTTCAGTCCAGAACTTCAGTTTAGGCAT--GGAATTCTCATTCTACAA-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5668133 390 + 21915920 CACTCTCTCT-CTCT-CTTCAGG-Ggtcttcatttaagccttttacccaagcacatttattaacagctctctctctctctctcagaagtgttatgatttggacaagaaattatgtagtc--actctaTGCATAGGGACAGGTCCTATCCCCAATGGAGAAAGCCCGTAAGAAATTTTAA----TACTTTA-----TTTTCTCTACACGTCTTAGGTCTTGTAAAGGACCTACTTTT----TAAAATGGACTCGT-AA-TTTCCATTCCTCCTCT---TTTACCCACTTCCTATTTGAAGAAGG---------GATTGAATAGTCAGGCGACTTTCCTTTATA-A---T--GTATAGCATGCTCT-TGAG-GTACTGCTTCATGTCTTCAGTCCAGAACTTCAGTCTGGGCAT--GGAATTCTCATTCTACAA-- i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640262 390 + 1337817 CATGC-CCATGATCA-CTTCAGG-GGTCTTCATTTAAGCCTTTTACCCAAGCACATTTATTAACAGGTTCCTTGGTCATGCTCAGAAGTGTTATGATTTGGACAAGAAATTATGTAGTC--ACTCTATGCATAGGGACAGGTCCTATCCCCAATGGAGAAAGCCCGTAAGAAATTTTAA----TACTTTA-----TTTTCTCTACACGTCTTAGGTCTTGTAAAGGACCTACTTTT----TAAAATGGGCTCAT-AA-TTTCCATTCCTCCTCT---TTTACCCACTTCCTATTTGAAGAAGG---------GATTGAATAGTCAGGCGACTTTCCTTTGTA-A---T--GTATAGCATGCTCT-TGAG-GTACTGCTTCATGTCTTCAGTCCGGAACTTCAGTCTGGGCAT--GGAATTCTCATTCTACAA-- i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19150592 384 + 50472720 tatg--ccacaatca-cttcatg-agtcttcatttttgccttttacccaagcacatttatta--agtgtccttggccatgctcagaagtgttgtgatttggacaagaaattatgtagtc--actctaTGCCTGCGGACAGGTCCT---ATCAGTGGAG-AAGCCCATAAGAAACTTTAA----TAGTTTAT----TTTTTTCTACAAGTCTTAGGTCTTGCAAAGGTCTTACTTTA----TAAAACGGGCTCAT-AA-TATCCATTCCTCCTCT---TTTACCCACTTCCTAGTTGAAGAGGG---------GATTGAATAGTCAGATAAATTTCCTTTATA-A---T--GTATAGCATGCTCT-TGAG-GTATTGCTCAATTTCTTCAGTTTAGAACTTCAATCTGGGCAT--GTAATTCTCATTCTACAA-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2499174 386 + 13128814 tatg--ccatgatca-cttcatg-agtcttcatttatgccttttacccaagcacatttatta--agtgtccttggtcatgctcagaagtgttgtgatttggacaagaaattttgtagtg--actctaTGCATGTGGACAGGTCCTATCATCAATGGAG-AAGCCCATAAAGAATTTCAG----TACTTTA-----TTTTCTCTACAAGTCTTAGGTCTTGCAAAGGCCTTACTTTT----AAAAATGAGCTCAT-AA-TATCCATTCCTCCTCT---TTTACCCACTTCCTAGTTGAAGAGGG---------GATTGAATAGTCAAATAAATTTTCTTTATA-A---T--GTATAGCATGCTCT-TGAG-GTATTGCTCAATTTCTTCAGTTCAGAACTTCAGTCTGGGCAT--GTAATTCTCATTCTACAA-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7036703 386 - 14377064 tatg--ccacgatca-cttcatg-agtcttcatttatgccttttacccaagcacatttatta--aatgtctttggtcatgctcagaagtgctgtgatttggacaagaaattatgtagtc--actctaTGCATGTGGACAGGTCCTATCACCAATGGAG-AAGCCCATAAGGAGCTTTAA----TACTTTA-----TTTTCTCTACAAATCTTAGGTCTTGCAAGGGCCTTACTTTT----TAAAATGGGCTCAT-AA-TATCCATTCCTCCTCT---TTTACTCACTTCCTAGTTGAAGAGAG---------AGTTGAATAATCAGATAAATTTCCTTTATA-A---T--GTATAGCATGCTCT-TGAG-GTATTGCTCTATTTCTTCAGTTCAGAATTTCAGTCTGGGCAT--GTAATTCTCATTCTTCAA-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084396 386 + 9889416 tatg--ccacgatca-cttcatg-agtcttcatttatgccttttacccaagcacgtttatta--agtgtctttggtcatgctcagaagtgttgtgatttggacaagaaattatgtagtc--actctaTGCATGTGGACAGGTCCTATCACCAATGGAG-AAGCCCATAAGGAACTTTAA----TACTTTA-----TTTTCTCTCCAAGTCTTAGGTCTTGTAAAGGACTTACTTTT----AAAAATGGACTCAT-AA-TATTCATTCCTCCTCT---TTTACCCACTTCCTAGTTGAAGAGGG---------GATTGAATAGTCAGATAAATTTCCTTTATA-A---T--GTATAGCATGCTCT-TGAG-GTATTGCTCAATTTCTTCAGTTCAGAACTTCAGTCTCAGCAT--GTAATTCTCATTCTACCA-- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18336614 403 - 38779656 tatgc-tcatgatcattttccat-agtgtggatttaagccttttctccaagaaaaattactggtagtgcccccaattgtgctcagaagtatactagtttggacac-caattatgtggtt--gccttTGGCACAGGGATAAGTCCTACCAACAAGGGAG-AAGCACATAAGAAATTGGAA----TTCTTTAGTTA-TTTTCTGTACTGATCTCAGGTCCTGGAAAGGTCTTACTTTT----AAAAATAGGTTCATAAA-GATCCACTTTCACTCC---TGTTATCCCTCCATATGTGATGGGGGGTTGGCAGAGATTGAATAGCCCAGTGACTTAACTTTATATG---A--CTGTAGCTGGTTCT-TGAG-ATATGTCTCAATTTCTTCAGCCCAGAACTTAAGTCT-GGCGT--GGAATTCTCATTCTATGA-- i otoGar3.GL873528 C 0 I 1506 s canFam3.chr31 11451320 393 + 39895921 catat-ttatgatca-ctttagacagctttgatttaaaacttttatctaggcaaaattcttaacagtgccc-cagtcatgctcagaagtgtc-tggtttggacaagcaattatgttgtc--accctaGGCATAGGGACAGATTCTACCACCAAAGGAGGAA----ATAAGGAGCTGTAA----TCCTTTAATTCTTTTTCTCTACAAGTCTAAGGTCCTCAAAAGGCTTTACTTTTAAAAAAAAATGGGCTCAA-AA-GGATTACTCTTTCTGCTGGTTTTCCTA-----TATTTGATTGAGG---------GATTGCATAGCTAGGCAA-----TTTTATA-AATGA--GTGTAGCTTGTTCT-CCAATGTATTGCTCAACTTTTTCAGTTCAGAAGTTCAGTCTGGGCATTCTATATTCTCATTTTACGT-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 654060 364 - 6883506 -------------------CAGA-TCActtggtttcagccctttatcc--ttaattctattaacagtgtctcttgtcatgctcagaactgttatgatttggacaagaaattatgtgatTTGTCCCAAGGTACAGGGACAGGTTCT---------------AGTCCATAAGGAATCACAAGTCCTCACTTA-----TTTTCTCTATAATTCCCAGGTCTTAAAAAGCCCCTGCTTTT-----AAAATGGGCTCAG-AAGGATCCCCTCTTCCTCC---TGGTCCCCTTCTTTATTTGATT-GGG---------GATTAAATGCACAGGTGACTTCCTTTTACA-A---TGAGTGCATCTCATTCTCCAAG-AAATTTCTCAACTTCTTTGGCCCAGAAGCTCAGTCAGGACAT--AAACCTCTCATTT--CAATT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16852654 424 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=249724.000000 s hg38.chr21_GL383578v2_alt 46789 33 + 63917 CCCTAAACTT--GAAAC--ATTGACCTTGGGTACAAA s panTro5.chr21 884291 33 + 33445071 CCCTAAACTT--GAAAC--ATTGACCTTGGGTACAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568930 33 + 46275980 CCCTAAACTT--GAAAC--ATTGACCTTGGGTACAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481057 33 - 13858734 CCCTAAACTT--GAAAC--ATTGACCTTGGGTACAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603248 33 + 32716333 CCCTAAACTT--GAAAC--ATTGACCTTGGGTACAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152675797 35 - 185818997 CCCTAAACTT--GAAACATATTGACCTTGGGTACAAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159483872 35 - 192294377 CCCTAAACTT--GAAACATATTGACCTTGGGTACAAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5928699 35 + 9440265 CCCTAAACTT--GAAACATATTGACCTTGGGTACAAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5668523 35 + 21915920 CCCTAAACTT--GAAACATATTGACCTTGGATACAAA i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640652 35 + 1337817 CCCTAAACTT--GAAACATATTGACCTTGGATACAAA i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19150976 33 + 50472720 TGCTGAACTC--GAAAC--ATTGATCTTGGGTACAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2499560 33 + 13128814 CACTGAACTT--GAAAC--ATTGATCTTGGGTACAAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037089 33 - 14377064 TGCTGAACTT--GAAAC--ATTGATCTTGGGTACAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084782 33 + 9889416 TGCTGAACTT--GAAAC--ATTGATCTTGGGTACAAA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18338523 33 - 38779656 CTCTGTACTT--GAAAC--AGTCATCTTAGGTGTAGT i otoGar3.GL873528 I 1506 I 13 s canFam3.chr31 11451713 19 + 39895921 CCCTGTATTTGGGGGAC--AT---------------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 654424 32 - 6883506 TACTGTTCTT--GAGAC--ATTCATCTTGGA-GCAAA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16852654 424 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=1159208.000000 s hg38.chr21_GL383578v2_alt 46822 114 + 63917 TGTGAGATTCACTAATTTGAGGGTGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTGCC s panTro5.chr21 884324 114 + 33445071 TGTGAGATTCACTAATTTGAGGGTGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTGCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14568963 114 + 46275980 TGTGAGATTCACTAATTTGAGGGTGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTGCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481090 114 - 13858734 TGTGAGATTCACTAATTTGAGGGTGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTCCC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603281 114 + 32716333 TGTGAGATTCACTAATTTGAGGGTGGAGATGATCTGTAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACGCCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTGCC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152675832 114 - 185818997 AGTGAGATTCACTAATTTGAGGGTGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCTAGACCCTGtgcc i rheMac8.chr3 C 0 I 1043 s macFas5.chr3 159483907 114 - 192294377 AGTGAGATTCACTAATTTGAGGGTGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCTAGACCCTGtgcc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5928734 114 + 9440265 AGTGAGATTCACTAATTTGAGGATGGAGATGATTCATAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCTAGACCCTGtgcc i macNem1.NW_012019910v1 C 0 I 1043 s cerAty1.NW_012002954v1 5668558 114 + 21915920 TGTGCTCTCTCTCTCTCTGAGGGTGGAGATGTTTCGTAGTACAGTTATT---ATCATTCTTTAATTAACTCTCTCTCTCTCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTGCC i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640687 114 + 1337817 TGTGAGATTCACTAATTTGAGGGTGGAGATGTTTCGTAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCTTGTGGCCTGTTCCATCTCCCAGACCCTGTGCC i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19151009 114 + 50472720 TGTGAGTTTCACTAATTTGTGGATAGAGATGATTCGTAATACAGTTATT---ATCATGCTTTAATTAATTACCTGAGCAGCTCCCTGTGACCTATTCCATCTCCCAGTCCCTGTGCC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2499593 114 + 13128814 TGTGAGTTTCACTAATTTGAGGATAGAGATGGTTTGTAGTACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCCTGTGACCTGTTCCATCTCCTAGTTCCTGTGCC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037122 114 - 14377064 TGTGAGTTTCACTAATTTGAGGATGGAGATGGTTCGTAGTACAGTTACT---ATCATTCTTTAATTAATTACCTGAACAGCTCCCTGTGACCTATTCCATCTCCCGGTCCCTGTGCC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084815 114 + 9889416 TGTGAGTTTCACTAATTTGAGGATGGAGATGATTCGTAATACAGTTATT---ATCATTCTTTAATTAATTACCTGAACAGCTCCCTGTGACCTATTCCATCTCCCAGTCCCTGTGCC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16853078 116 + 47401472 TGTGAGATTCAGTAATTTGggggtaaagatgattcctgatatagctgttttaatcattctttaattacttacccggacatctctctgtggcctgct-catcttctagatcctatgcc i micMur3.chr31 I 424 C 0 s otoGar3.GL873528 18338569 116 - 38779656 TGTGAGAGTCAGT-ATTTTggggtaaagatgattagtggtacagctgttcttatcattctttaattacttatctggacagttctctgtggccttctccatctcccagaccctgtgcc i otoGar3.GL873528 I 13 C 0 s canFam3.chr31 11451732 112 + 39895921 TGTGAGATTCAGTAATTTg-gggtggagaggattcctggcagagctatttt-ataatttttaaattaattacctgaacagctccctatggccagcgccatctccccagcactac--- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 654456 98 - 6883506 TGTGGGATTCTGTAATTTTGGGGTGGAGGTGATACCTGGCACAGCTATTTT-ATTATTCTTTAAATAGC------------------TGGCAAGCTCCATCTCCCATGCCTTTCTCC i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I a score=34804.000000 s hg38.chr21_GL383578v2_alt 46936 4 + 63917 TTTT s panTro5.chr21 884438 4 + 33445071 TTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569077 4 + 46275980 TTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481204 4 - 13858734 TTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603395 4 + 32716333 TTTT i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159484021 4 - 192294377 ctct i macFas5.chr3 C 0 I 1032 s cerAty1.NW_012002954v1 5668672 4 + 21915920 TTTT i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640801 4 + 1337817 TTTT i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19151123 4 + 50472720 TTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2499707 4 + 13128814 TTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037236 4 - 14377064 TTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084929 4 + 9889416 TTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16853194 4 + 47401472 tttt i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18338685 4 - 38779656 tttt i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 654554 4 - 6883506 TTTT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e canFam3.chr31 11451844 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I a score=2261648.000000 s hg38.chr21_GL383578v2_alt 46940 346 + 63917 GTTCTTTGTGTGATTTGGTGCTTAAAAAA-----AA-ATCATTTATTTTGAG---CTCTTCTTTGTTTGTAAAGGACTTATAGTTCTGCAGCTATGTTAgatttcattgtcagtctgttcccacttgcttcatattatcttccaggaattctttgcttttctggtttgtggtggtgtaacacctgactttcaagtgcttttatgagtttactttttatcattttacttactgtgtcattagaaaagggatttgaggaagcagggaaggaagcttaactcaagagtgttc----ggtaagccatcatg-----aatgagaaCCTCTATGT-GTTTTTT--CTTATTATTACAGACTTCTTGAAATTTT s panTro5.chr21 884442 345 + 33445071 GTTCTTTGTGTGATTTGGTGCTTAAAAAA-----AA--TCATTTATTTTGAG---CTCTTCTTTGTCTGTAAAGGACTTATAGTTCTGCAGCTATGTTAgatttcattgtcagtctgttcccacttgctttatattatcttccaggaattctttgcttttctggtttgtggtggtgtaccacctgactttcaagtgcttttatgagtttactttttatcattttacttactgtgtcattagaaaagggatttgaggaagcagggaaggaagcttaactcaagagtgttt----ggtaagccatcatg-----aatgagaaCCTCTATGT-GTTTTTT--CTTATTATTACAGACTTCTTGAAATTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569081 346 + 46275980 GTTCTTTGTGTGATTTGGTGCTTTAAAAA-----AA-ATCATTTATTTTGAG---CTCTTCTTTGCCTGTAAAGGACTTATAGTTCTGCAGCTATGTTAgatttcattgtcagtctgttcccacttactttatattaccttccaggaattctttgcttttctggtttgtggtggtgtaccacctgactttcaagtgcttttatgagtttactttttatcattttacttactgtgtcattagaaaagggatttgaggaagcaaagaaggaagcttaactcaagagtgttt----ggtaagccatcatg-----aatgagaaCCTCTATGT-GTTTTTT--CTTATTATTACAGACTTCTTGAAATTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481208 347 - 13858734 GTTCTTTGTGTGATTTGGTGCTTAAAAAA-----AAAATCATTTATTTTGAG---CTCTTCTTTGTCTGTAAAGGACTTATAGTTCTGCAGCTATGTTAgatttcattgtcagtctgttcccacttgctttatattatcttccaggaattctttgtttttctggtttgtggtggtgtaccacctgactttcaagtgcttttatgagtttactttttatcattttacttactgtgtcattagaaaagggatttgaggaagcagggaaggaagcttaactcaagagtgttt----ggtaagccatcatg-----aatgagaaCCTCTATGT-GTTTTTT--CTTATTATTACAGACTTCTTGAAatttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603399 344 + 32716333 GTTCTTTGTGTGATCTGGTGCTTAAAAAA--------ATCGTTTATTTTGAG---CTCTTCTTTGTCTGTAAAGGACTTATAGTTCTGCAGCTATGTTAgatttcactgtcaatctgttcccacttgctttatattatcttccaggaattctttgcttttctggtttatggtggtataccacctggctttcaagtgcttttatgggtttactttttatcattttacttactgtgtcattagaaaagggatttgaggaagcagggaaggaagCTGAACTCAAGAGTGTTT----GGTAAGGCAGCATG-----AACGAGAACCTCTATGC-GTTTTTT--CTTATTATTACAGACTTCTTGAAATTTT i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5668676 343 + 21915920 GTTCTTTGCTCTCTCTCTCTCTTAAAAA---------ATCATTTATTTTGAG---CTCTTCTTTGTCTGTAAAAGACTTACAGTTCTGCAGCTATGTTAGGTTTCATTGTCAGTCTGTTCCCACTTGCTTTGTATTATCTTCCTCTCTCTCTCTCTTGTTCTGGTTTGTGGTGGTATACCACCTGGCTTTCAAGTGCTTTTATCTCTCTCTCTCTCTTCATTTTACTTACTGTGTCATTAGAAAAGGGATTTGAGGAAGCAGGGAAGGAAGCTGAACTCAAGAGTGTTT----GGTAAGTCATCTTG-----AATGAGAACCTCTATGT-GTTTTCT--CTCTCTCTCTCTGACTTCTTGAAATTTT i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 640805 343 + 1337817 GTTCTTTGTGTGATTTGGTGCTTAAAAA---------ATCATTTATTTTGAG---CTCTTCTTTGTCTGTAAAAGACTTACAGTTCTGCAGCTATGTTAggtttcattgtcaatctgttcccacttgctttgtattatcttccaggaattctttgttgttctggtttgtggtagtataccacctggctttcaagtgcttttatgggtttactttttatcattttacttactgtgtcattagaaaagggatttgaggaagcagggaaggaagctgaactcaagagtgttt----ggtaagtcatcttg-----aatgagaaCCTCTATGT-GTTTTTT--CTTATTATTGTAGACTTCTTGAAATTTT i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19151127 339 + 50472720 GTTTTTTGTGTGATTTGGTGCTTAAAAAACTATAAATAAAATCTATTTTGAG---CTCTTCCTTGTCTGT-GAGGACTTATAGTTCTACAGCTATGTTAGGTTTCATTGTCAATCTGTTCCCACTTGCTTTATAATATCTTCCAGGAATTCTTTGCTTTTCTGGTTTGTGGTAGTATACCACCTGGCTTTCAAGTGCTTTTATGGATTTATTTTTTGTCACTTTACTTTCTGTGTCATTAGAAAAGGGATTTGAGGAAGCAAGGAAGGAAGCTAAACTCAAGGGTATTT----GA--------GTTT-----AATGAAAA---CTATGC--TTTTTT--CTTATTACTACAGACTTCTTAAAATTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2499711 351 + 13128814 GTTCTTTGTGTGATTTGGTGCTTAAAAAACCATAAATAAAATCTATTTTGAG---CTCTTCATTGTCTGT-AAGGACTTACAGTGCTGCAGCTATGTTAggtttcattgtcaatctgttcccacttgctttataatatcatccaggaattctttgcttttctggtttgtggtagtataccacctggctttcaagtgcttttatggatttattttttgtcactttactatctgtgtcattagaaaagggatttgaggaagcaaggaaggaagCTAAACTCAAGTGTATTT----GGCAAGCCATCTTG-----AATGGAAACCTCTATGC-TTTTTTT--CTTATTATTACAGACTTCTTAAAATTGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037240 348 - 14377064 GTTCTTTGTGTGATTTGGTGCTTAAAAAACTATAAATAAAATCTATTTTGAG---CTCTTCGTTGTCTGT-AAGGACTTAGAGTTCTGCAGCTATGTTAggtttcattgtcaatctgttcccacttgctttataatatcttccaggaattctttgcttttctggtttgtggtagtataccacctggctttcaagtgcttttatggatttattttttgtcactttactttctgtgtcattagaaaagggattcgaggaagcaaggaaggaagctaaactcaagggtagtt----ggtaagccatctta-----aatgaaaaccTCTGTGC-TTTTTTT--CTTAT---TACACACTTCTTAAAATTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6084933 351 + 9889416 GTTCTTTGTGTGATTTGGTGCTCAAAAAACTATAAATAAAATCTATTTTGAG---CTTTTCTTTGTCTGT-AAGGACTTACAGTTCTACAGCTATGTTAggtttcattgtcagtctgttcccacttgctttgtaatatcttccaggaattctttgcttttctggtttgtggtagtataccatctggctttcaagtgcttttatggatttattttttgtcactttactttctgtgttatttgaaaagggatttgaggaagcaaggaaggaagctaaactctagggtattt----ggtaagccatcttg-----aatgaaaaccTCTATGC-TTTTTTT--CTTATTATTACAGACTTCTTAAAATTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16853198 339 + 47401472 gttttgtttgtgatttgctgctttaaaaa--------ctcatctattttgag---ctcttcagtgtctgtatgggatttatagttcctcagctttgttaggtttcattattaatctgttcccatttgctttatggtatt-tccaggaattctttgcttttctggtttgtggtagcataccacctggctttcaagtgctattagggattta-tttttatcattttacttactgtgtcattagaaaatggattcgaggaagcagggaaga----taaactcaagaatgttt----ggtaagccatcttg-----aatgagagccTCTATGT-TT-TTTAAAATTATTATTATAGACTTCTTAAAATATT i micMur3.chr31 C 0 I 41 s otoGar3.GL873528 18338689 339 - 38779656 gtttttcttctaatttggagctttaaaac--------ct--tgtattttgag---ctcttcattgtctgtaagggatttatagttcctaggctttgttaggtttcattatcattttcttcccatttgctttatagtattgtctcagaattctttgcttttctggttagtagtcatgtaccacctggattccaagtattattgtggattta-ttttcattattttacttattgtgtcattagaaaatcaatttgacgaagccgggaaga----taaactgaagagtgttt----gataagccgtcttg-----catgagagccTCTATGT-TTCTTTTAAATTATTACTACAAACTTCTTGAGACTTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11451844 306 + 39895921 -------------ttcggtgcttaaaaca----------------gtcggag---ttcctctttcattgt-atggatttatagttccccatctctattaggtttcattgtcagtcttttcccatttgctttataatatattccaggaattcttcactgttctggttt------gcattccacctagctttcaagtgctgttatagattta-tttttattgtttcatttcttgtgtcattggaaaagggatttgaagaagc----aaggaagctaaacTCAAGAAT---------GTAGTCCCTCTTG-----AGGGAGAGCCTCTATGTCTTTTTTT--CTTATTATTATAGA-TTCTTGACATATT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 654558 339 - 6883506 GTTCTTTGTGTAATTTTGTGCTTTGAAAA-----A--CTCATCTGTTTTGAGCCCCTCCTCTTTGTCTGTATGGGATTTATCATTCCTGAActttgtttggtttcattgttaatctgttccaacttgctttataatattttccaggaattcattgctcttctggtttgtggtagcataccatccaactttcaagtgctgttatggactta-ttttcatcattttatttcttgtgtcatt-------------GAGGAAGCAGGAAAG----CTAAACTTGATAGTATTTTGTAGGTAAGCCATTTTGAGGGCAGTGAGAGCTTCTATGT-CTTTTTG--CCTTTTTATATAGACTTCTCAAAATATT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=63270.000000 s hg38.chr21_GL383578v2_alt 47286 30 + 63917 ATTTCAATTTTTCTCCAG-TTTt----atatata----------------t s panTro5.chr21 884787 30 + 33445071 ATTTCAATTTTTCTCTAG-TTTt----atatata----------------t i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569427 30 + 46275980 ATTTCAATTTTTCTCTAG-TTTt----atatata----------------t i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481555 30 - 13858734 atttcaatttttctctag-tttt----atatgta----------------t i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603743 31 + 32716333 ATTTCAATTTTTCTCTAGTTTTt----atatata----------------t i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669019 46 + 21915920 ATTTCAA-TTTTCTCTAGCTTTt----atatataatctctctctctctctt i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641148 41 + 1337817 ATTTCAA-TTTTCTCTAGCtttt----atatctattttatatcta-----t i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19151466 29 + 50472720 ATTTCAT-TTTTCTCTAT-TTCt----atatata----------------c i calJac3.chr21 C 0 I 9 s saiBol1.JH378168 2500062 30 + 13128814 ATTTCAT-TTTTCTCTAT-TTTTC---ATATATA----------------T i saiBol1.JH378168 C 0 I 17 s cebCap1.NW_016107322v1 7037588 30 - 14377064 ATTTCAT-TTTTCTCTAT-TTTTC---atatata----------------t i cebCap1.NW_016107322v1 C 0 I 63 s aotNan1.NW_018487195v1 6085284 33 + 9889416 ATTTCAT-TTTTCTCTAT-TTTTCATtatatata----------------t i aotNan1.NW_018487195v1 C 0 I 17 s otoGar3.GL873528 18339028 21 - 38779656 --------TTTTTTCTGT-TTTT----TCTTAGT----------------- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11452150 29 + 39895921 TTCTTGT-TTCTCTCTCT-CTCT----CTCTCTT----------------T i canFam3.chr31 C 0 I 8 s dasNov3.JH568778 654897 27 - 6883506 -TTCCTTTTTTTTTCTTT-TTTA----CCATTT------------------ i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853537 41 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=1440.000000 s hg38.chr21_GL383578v2_alt 47316 14 + 63917 ------tatttattt-------tatat s panTro5.chr21 884817 14 + 33445071 ------tatttcttt-------tatat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569457 14 + 46275980 ------tgtttattt-------tatat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481585 14 - 13858734 ------tatttattt-------tatat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603774 14 + 32716333 ------tatatattt-------tacat i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669065 14 + 21915920 ------tatatattt-------tatat i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641189 14 + 1337817 ------tatatattt-------tatat i manLeu1.NW_012107264v1 C 0 C 0 s calJac3.chr21 19151504 21 + 50472720 ------tatatatatgtatatgtatat i calJac3.chr21 I 9 I 1 s saiBol1.JH378168 2500109 21 + 13128814 ------tgtgtgtgtgtgtgtgtgtgt i saiBol1.JH378168 I 17 I 1 s aotNan1.NW_018487195v1 6085334 13 + 9889416 ------tacatatat-------tata- i aotNan1.NW_018487195v1 I 17 C 0 s otoGar3.GL873528 18339049 8 - 38779656 ------TATTCAAA------------- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11452187 9 + 39895921 ------AATCTACTT------------ i canFam3.chr31 I 8 C 0 s dasNov3.JH568778 654924 17 - 6883506 TATTCAAATCTGCTT-------TT--- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853537 41 + 47401472 I e cebCap1.NW_016107322v1 7037618 63 - 14377064 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=15165.000000 s hg38.chr21_GL383578v2_alt 47330 4 + 63917 tata s panTro5.chr21 884831 4 + 33445071 tata i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569471 4 + 46275980 tata i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481599 4 - 13858734 tata i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603788 4 + 32716333 tata i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669079 4 + 21915920 tata i cerAty1.NW_012002954v1 C 0 I 4 s manLeu1.NW_012107264v1 641203 4 + 1337817 taca i manLeu1.NW_012107264v1 C 0 I 4 s calJac3.chr21 19151526 4 + 50472720 tata i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2500131 4 + 13128814 tgtg i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7037681 4 - 14377064 tata i cebCap1.NW_016107322v1 I 63 C 0 s aotNan1.NW_018487195v1 6085347 4 + 9889416 tata i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18339057 4 - 38779656 TATA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11452196 1 + 39895921 T--- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 654941 4 - 6883506 TGAA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853537 41 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e colAng1.NW_012116933v1 616884 308 - 3237654 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=28073.000000 s hg38.chr21_GL383578v2_alt 47334 6 + 63917 tatata--- s panTro5.chr21 884835 6 + 33445071 tatata--- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569475 6 + 46275980 tatata--- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481603 6 - 13858734 tatata--- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603792 6 + 32716333 tatata--- i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669087 6 + 21915920 tatata--- i cerAty1.NW_012002954v1 I 4 C 0 s manLeu1.NW_012107264v1 641211 6 + 1337817 tatata--- i manLeu1.NW_012107264v1 I 4 C 0 s colAng1.NW_012116933v1 617192 6 - 3237654 TATATA--- i colAng1.NW_012116933v1 I 308 C 0 s calJac3.chr21 19151530 6 + 50472720 tgtata--- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500135 6 + 13128814 tgtgtA--- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037685 6 - 14377064 tgtata--- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085351 6 + 9889416 tgtata--- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18339061 6 - 38779656 TATATT--- i otoGar3.GL873528 C 0 I 5 s canFam3.chr31 11452197 6 + 39895921 TCTAAA--- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 654945 6 - 6883506 ---AAAAGA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853537 41 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=984183.000000 s hg38.chr21_GL383578v2_alt 47340 122 + 63917 AACTTGCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAACAGATGTGCATAGTCATATGCGATCTATAACTGCTAAAATCTCTCACCCAAGA-AAAA-----------------AG-----------------AGATGGGCTTATTCTC s panTro5.chr21 884841 122 + 33445071 GACTTGCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAACAGATGTGCATAGTCATATGCGATCTATAACTGCTAAAATCTCTCACCCAAGA-AAAA-----------------AG-----------------AGATGGGCTTATTCTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569481 122 + 46275980 AACTTGCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAACAGATGTGCATAGTCATATGCGATCTATAACTGCTAAAATCTCTCACCCAAGA-AAAA-----------------AG-----------------AGATGGGCTTATTCTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481609 122 - 13858734 AACTTGCAGAGACAATCTTCCAGTAGAAAATCTACTGAATATGACAACAGATGTGCATAGTCATATGCGATCTATAACTGCTAAAATCTCTCACCCAAGA-AAAA-----------------AG-----------------ACATGGGCTTATTCTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603798 122 + 32716333 AACTTGCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAACAGATATACATAGTCATATGTGATCTATAACTGCTGAAATCTCTCACCCAAGA-AAAA-----------------AG-----------------AGATGGGCTTATTCTC i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669093 122 + 21915920 AACTTGCAGAGACAAtctctctctctctctctTACTGAATATGACAACAGATGTGCATAGTCATATGCGATCTATAACTGCTAAAATCTCTCACCCAAGT-AAAA-----------------AG-----------------AGATGGGCTTATACTC i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641217 122 + 1337817 AACTTGCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAACAGATGTGCATAGTCATATGCGATCTATAACTGCTAAAATCTCTCACCCAAGT-AAAA-----------------AG-----------------AGATGGGCTTATACTC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617198 122 - 3237654 AACTTGCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAACAGATGTGCATAGTCATATGAGATCTATAACTGCTAAAATCTCTCACCCAAGT-AAAA-----------------AG-----------------AGATGGGCTTATTCTC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19151536 122 + 50472720 AACTTCTAGAGACAATCTTCCAATAGAAAATCTACTGAATATAACAACAGATGTGCGTAGTCATTCGTGAACTATAACTCCTAAAATCTCTCACTGAAGG-AAGG-----------------GG-----------------AGATGGGCTTATTCTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500141 122 + 13128814 AACTTCCAGAGACAATCTTCCAATAGAAAATCTACTAAATATGACAACAGATGTGCATAGTTACACGTAAACTATAACTGCTAAAATCTCTCACTGAAGG-AAGA-----------------AG-----------------AGATGGGCTTATTCTC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037691 122 - 14377064 aatTTCCAGAGACAATCTTCCAATAGAAAATCTACTGAATATGACAGCAGATGTGCGTAGTCAAACGTGAACTATAACTGCTAAAATCTCTCACTGAAGG-AAGA-----------------AG-----------------AGATGGGCTTATTCTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085357 122 + 9889416 AACTTCCAGAGACAATATTCCAATAGAAAATCTACTGAATATGACAACAGATGTGTGTAGTCATACGTGAACTGTAACTGCTAAAATCTCTCACTGAAGG-AAGA-----------------AG-----------------AGATGGGCTTACTCGC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16853578 122 + 47401472 AACTTGCAGAGACAATCTTCCAAAGGAAAATCTACCGACTATGATAACAGCCTTGCATAGTCACACATAATCTGTAACTGCTAAAATCGCTGACCCAAAG-AAAA-----------------AG-----------------AGATGGGTTTATTCTC i micMur3.chr31 I 41 I 1877 s otoGar3.GL873528 18339072 122 - 38779656 AACTTG-GGTGACAATCTTCCAATGGAAAATCTACTTACTATAACAACAGACTTGCATAGTCATACGTAATCTTTGACTACAAAAATCTCTCACCCAGGGAAAAA-----------------AA-----------------AGATGGGTTTATTCCC i otoGar3.GL873528 I 5 C 0 s canFam3.chr31 11452203 139 + 39895921 AACTTGTAGAGACAGTTTTCTAGTGGAAAATCTACTGAATGTGACAACAGTTGTACATAGTCAGGCCTAAACCATACCTGCTAAAATCCCTCAACCAAAG-AGAG-----------------AGATAAGTTATCCCCATAAAAATGGGTTGAATTTT i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 654951 139 - 6883506 AACCTTCAGAGGCAAACTTTTATGGGAATATCTACTGATTATAACAACAAATATACATAGTCAGACCTAATCCATAACTGCTAAAATCCCTTGCCCAAGG-ATAAATAAATGCTGTCTCCATAG-----------------AGATGGATTGATTTTC i dasNov3.JH568778 C 0 I 9 e mm10.chr16 75833481 885 + 98207768 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=35605.000000 s hg38.chr21_GL383578v2_alt 47462 6 + 63917 CACGAT s panTro5.chr21 884963 6 + 33445071 CACGAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569603 6 + 46275980 CACGAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481731 6 - 13858734 CACGAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603920 6 + 32716333 CACGAT i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669215 6 + 21915920 TATGAT i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641339 6 + 1337817 TATGAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617320 6 - 3237654 TATGAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19151658 6 + 50472720 TACAAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500263 6 + 13128814 TACAAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037813 6 - 14377064 TATGAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085479 6 + 9889416 TACAAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18339194 6 - 38779656 TTTGAT i otoGar3.GL873528 C 0 I 2113 s canFam3.chr31 11452343 6 + 39895921 TATGAT i canFam3.chr31 I 1 C 0 s dasNov3.JH568778 655099 6 - 6883506 AATGAT i dasNov3.JH568778 I 9 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853700 1877 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=1208996.000000 s hg38.chr21_GL383578v2_alt 47468 173 + 63917 TATAAGGAGAAGTTCTACTAGAAAATTAGAATTCTATTCAAGA-AAGATAG-ATAAAACTGATGTGATtcagaaaaatgcaaataa-aaatggtaattaattgccactacactctca--ccagaatgggt-aaatgagagagactgatatcac-caagtgttggcaaggatgaagagtaa s panTro5.chr21 884969 173 + 33445071 TATAAGGAGAAGTTCTACTAGAAAATTAGAATTCTATTCAAGG-AAGATAG-ATAAAACTGATGTGATtcagaaaaatgcaaataa-aaatggtaattaattgccactacactctca--ccaaaatgggt-aaatgagagagactgatatcac-caagtgttggcaaggatgaagagtaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569609 173 + 46275980 TATAAGGAGAAGTTATACTAGAAAAATAGAATTCTATTCAAGG-AAGATAG-ATAAAACTGATGTGATtcagaaaaatgcaaataa-aaatggtaattaattgccactacactctca--ccagaatgggt-aaatgagagagactgatatcac-caagtgttggcaaagatgaagagtaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481737 173 - 13858734 TATAAGGAGAAGTTCTACTAGAAAATTAGAATTCTATTCAAGG-AAGATAG-ATAAAACTGATGTGATtcagaaaaatgcaaataa-aaatggtaattaattgccactacactctca--ccagaatgggt-aaatgagagagactgatatcac-taagtgttggcaaggatgaagagtaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1603926 173 + 32716333 TATAAGGAGAAGTTCTACTAGAAAATTAGAATTCTCTTCATGG-AAGATAG-ATAAAACTAATGTGATtcagaaaaatgcaaataa-aaatggtaattaattgccactacactctca--ccagaatgggt-aaatgagagagactgatatcat-caagtgttggcaagaatgaagagtaa i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669221 173 + 21915920 TATAAAGAGAAGTTCTACTAGAAAATTAGAATTCTATTCATGG-AAGATAG-GTAAAACTTATGTAATtcagtaaaatgcaaataa-aaatggtaatgaattgccaccacactctca--ccagaatgggt-aaatgagagagactgatatcac-caagtgttggcaaggatgcagagtaa i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641345 173 + 1337817 TATAAAGAGAAGTTCTACTAGAAAATTAGAATTCTATTCATGG-AAGATAG-GTAAAACTGATGTAATtcagtaaaatgcaaataa-aaatggtaatgaattgccaccacactctca--ccagaatgggt-aaatgagagagactgatatcac-caagtgttggcaaggatgcagagtaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617326 173 - 3237654 TATAAAGAGAAGTTCTACTAGAAAATTAGAATTCTATTCATGG-AAGATAG-GTAAAACTGATGTGATtcagcaaaatgcaaataa-aaatggtaatgaattgccaccacactctca--ccagaatgggt-aaatgagagagactgatatcac-caagtgttgacaaggatgcagagtaa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19151664 173 + 50472720 TACAA-GAGAAGTTGTATCAGAAAATTAAAGTTCTATTTATAG-AAGATAG-ATAAAGCTGATGTGATtcagaaaaatgcaaataagaaatgataatgaattgccactacacactga--ccagaatcagt-aaatgagagagactgatatcac-caagtgttggcaaggatgcagggtaa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500269 174 + 13128814 TACAAGGAGAAGTTCTATCAGAAAATTAGAATTCTATTTATGG-AAGATAG-ATAAAGCTGATGTGATtcagaaaaatgcaaataaaaaatgataatgaattgccactacacactga--ccagaatcagt-aaatgagagagactgatatcac-caagtgttggccaggatgaaaagtaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037819 174 - 14377064 TACAAGGAGAAGTTGTATCAGAAAATTAGAATTCTATTTATAG-AAGATAG-ATAAAGCTGATGTGATtcagaaaaatgcaaataaaaaatgataatgaattgccactacacactga--ccagaatcagt-taatgaaagagactgatatcac-caaatgttggcaaggatgaagagtaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085485 173 + 9889416 TACAAGGAGAAGTTCTATCAGAAAATTAGAATTCTATTTATAG-AAGATAG-ATAAAGCTGATGTGATtcagaaaaatgcaaataa-aaatggtaatgaattgccactacacactga--ccagaatcagt-aaatgagagagactgatatcac-caagtgttggcaaggatgcagagtaa i aotNan1.NW_018487195v1 C 0 I 72 s otoGar3.GL873528 18341313 175 - 38779656 TATAAGGAACAGTTCTACCAGAAAATGAGAATTCTACTCTTGGAAAGATAG-ATAAAACTGATGTGATtctggaaaatgtagataa-aaatggtaatgaattgtcaccacacacacattccagaataggt-aaatg--agaaactgctaacaaggaaatattgacaaggataaagagcaa i otoGar3.GL873528 I 2113 C 0 s canFam3.chr31 11452349 169 + 39895921 TATAAGATACAATTCCACCAGAAAACTAGAATTCTTCTGCTGGCAAGACAGAAAAAAATTGATGTAACtcaggaagatgcaaataa-aaatg------aattgccactatacattca--ccagaatggctaaaatgaaaaagatttgtattat-taagtactggcca-gatgcaaggtaa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 655105 172 - 6883506 GATAAGGATCAGTACTACCAGGAAACTAGAGTTCTACTCTTGTCAATACAG-ATAAAACCTCTGTGAAt-atgaaaatgcaaata--aatccatgatgaaatactactatatgtgca--ttggaatagctaaaatgaaaaacactggtattac-caagt-ttggcaaggatgcagagcaa i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853700 1877 + 47401472 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=40722.000000 s hg38.chr21_GL383578v2_alt 47641 8 + 63917 ccagaatt s panTro5.chr21 885142 8 + 33445071 ccagaatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569782 8 + 46275980 ccagaatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481910 8 - 13858734 ccagaatt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1604099 8 + 32716333 ccagaatt i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669394 8 + 21915920 ctagaatt i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641518 8 + 1337817 ctggaatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617499 8 - 3237654 ctagaatt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19151837 8 + 50472720 ctagaatt i calJac3.chr21 C 0 I 53 s saiBol1.JH378168 2500443 8 + 13128814 ctagaaTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7037993 8 - 14377064 ctagaatt i cebCap1.NW_016107322v1 C 0 I 64 s otoGar3.GL873528 18341488 8 - 38779656 ctaaaaat i otoGar3.GL873528 C 0 I 1 s canFam3.chr31 11452518 8 + 39895921 ccataacc i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 655277 8 - 6883506 ttggtact i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853700 1877 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=136726.000000 s hg38.chr21_GL383578v2_alt 47649 34 + 63917 tctttaccagatggtaggagtaaaagctggtaaa----- s panTro5.chr21 885150 34 + 33445071 tctttaccagatggtaggagtaaaagctggtaaa----- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569790 34 + 46275980 tctttaccagatggtaggagtaaaagctggtaaa----- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481918 34 - 13858734 tctttaccagatggtaggagtaaaagctggtaaa----- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1604107 34 + 32716333 tctttaccagatggtaggagtaaaagctggtaaa----- i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669402 34 + 21915920 tcttcaccagatggtaggagtaaaagctggtaaa----- i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641526 34 + 1337817 tcttcaccagatggtaggagtaaaagctggtaaa----- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617507 34 - 3237654 tcttcaccacatggtaggagtaaaagctggtaaa----- i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2500451 30 + 13128814 -TGTGAC--GGTGGTAAG-GCAGAAACTGTTAAA----- i saiBol1.JH378168 C 0 I 11 s otoGar3.GL873528 18341497 34 - 38779656 tttttaccagaaagtaggagtaaaaactggtaaa----- i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11452526 32 + 39895921 cctttaccagatggctggaataaaaactggta------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 655285 39 - 6883506 ctcttaccagctgataggagtaaacagtggtacaaccaa i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853700 1877 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=1138831.000000 s hg38.chr21_GL383578v2_alt 47683 360 + 63917 aaccatta-ggaaaac----tggcattgtctactaaatctgagcacacac--------aaat--------ccagaaatttaacttctga--gtttatatcctatagaaatgcatatataagtg-caccaaaaaacacttaagag--aatgttcatagcagtattgtttttcagaagcctgaaactggaaagaa-ccaaatgtccatcaacagaaaaatgaataagcaaattataaatacccatacattagcatacacagcatattaatac-tatatagcaat-aaaaatgacaaactgctgctacat-----acaacagagctcaatctcac-aaaagttatgttgaacaaaataa--cagacacaaaagtgtacaaaattgtatatattgtatgat s panTro5.chr21 885184 360 + 33445071 aaccatta-ggaaaac----tggcattgtctactaaatctgagcacacac--------aaat--------ccagaaatttaacttctga--gtttatatcctatagaaatgcatatataagtg-caccaaaaaacacttaagag--aatgttcatagcagtattgtttttcagaagcctgaaactggaaagaa-ccaaatgtccatcaacagaaaaatgaataagcaaattacaaatacccatacattagcatacatagcatattaatac-tatatagcaat-aaaaatgacaaactgctgctacat-----acaacagagctcaatctcac-aaaagttatgttgaacaaaataa--cagacacaaaagtgtacaaaattgtatatattgtatgat i panTro5.chr21 C 0 C 0 s panPan2.chr21 14569824 360 + 46275980 aaccatta-ggaaaac----tggcattgtctactaaatctgagcacacac--------aaat--------ccagaaatttaacttctga--gtttatatcctatagaaatgcatatataagtg-caccaaaaaacacttaagag--aatgttcatagcagtattgtttttcagaagcctgaaactggaaagaa-ccaaatgtccatcaacagaaaaatgaataagcaaattacaaatacccatacattagcatacacagcatattaatac-tatatagcaat-aaaaatgacaaactgctgctacat-----acaacagagctcaatctcac-aaaagttatgttgaacaaaataa--cagacacaaaagtgtacaaaattgtatatattgtatgat i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 481952 358 - 13858734 aaccatta-ggaaaac----tggcattgtctgctaaatctgagcacacac--------aaat--------ccagaagcttaacttctga--gtttatatcctatagaaatgcatatataaatg-caccaaaaaacactt--gag--aatgttcatagcagtattatttttcagaagcctgaaactggaaagaa-ccaaatgtccatcaacagaaaaatgaataagcaaattataaatacccatacattagcatacacagcatattaatac-tatatagcaat-aaaaatgacaaactgctgctacat-----acaacagagctcaatctcac-aaaagttatgttgaacaaaagaa--cagacacaaaagtgtacaaaattgtatatattgtatgat i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1604141 360 + 32716333 aaccatta-ggaaaac----tggcattatctactaaatctgagcacacac--------aaat--------ccagaaatttaacttctga--gtttatgtcctatagaaatgcatatataaatg-caccaaaaaacacttaaggg--aatgttcatagcagtattatttttcagaagtctgaaactggaaagaa-ccaaatatccatcaacagaaaaatgaataagcaaattataaatacccatacgttagcatacacagcatattaatac-tagatagcaat-aaaaatgacaaactgctgctacat-----acaacagagctcaatctcac-aaaagttatgttgaacaaaagaa--cagacacaaaagtgtatgaaagagtatatattgtatgat i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669436 359 + 21915920 aaccttta-ggaaaac----tggcattatctactaaatctgagcacacac--------aaat--------ccataaatttaacttctga--gtttatatcctatagaaatgcatatataagtg-cacc-aaaaacacttaagag--aatgttcatagcagtagtatttttcagaagtctgaaactggaaagaa-ccaaatgtccatcaacagaaaaatgaataagcaaattataaatactcatacgttagcatacacagcatgttaatac-tatagagcaat-aaaaatgacaaactgctgctacat-----acaacaga-ctctctctctctctaagttacgttggacaaaagaa--cagacacaaaagtgtacaaaagagtatatattgtatgat i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641560 359 + 1337817 aaccttta-ggaaaac----tggcattatctactaaatctgagcacacac--------aaat--------ccataaatttaacttctga--gtttatatcctatagaaatgcatatataagtg-cacc-aaaaacacttaagag--aatgttcatagcagtagtatttttcagaggtctgaaactggaaagaa-ccaaatgtccatcaacagaaaaatgaataagcaaattataaatactcatacgttagcatacacagcatgttaatac-tatagagcaat-aaaaatgacaaactgctgctacat-----acaacagagctcaatctcac-aaaagttacgttggacaaaagaa--cagacacaaaagtgtacaaaagagtatatattgtatgat i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617541 359 - 3237654 aaccatta-ggaaagc----tggcattatctactaaatctgagcacacac--------aaat--------tcataaatttaacttctga--gtttatgtcctatagaaatgcatatgtaagtg-cacc-aaaaacacttaagag--aatgttaatagcagtagtatttttcagaagtctgaaactggaaagaa-tcaaatgtccatcaacagaaaaatgaataagcacattataaatacccatacgttagcatacacagcatattaatac-tatagagcaat-aaaaatgacaaactgctactacat-----acaacagagctcaatctcac-aaaagttacgttggacaaaagaa--tagacacaaaagtgtacaaaagagtatatattgtatgat i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18341531 347 - 38779656 -accatca-ggaaaac----tggcattgtctactaaatttgagtagacac--------aaatcttatgacccagaaatttcactttcgg--gtttatatccattagaaatgcatttataagta-ctca-aaagacattgaagag--aatattcctagctatatta-tttccagtagccccgaatcagaaacaa-cctaatatctatcaatagaataatggatgaataaattacaaataccca-acattagttcattcaacata-aaatacatatacaacaataaaaaaaggcaaaccaccactgcat-----acaacagaaatcaacttcat-taaagttacagtgagta---------agacacagaagagtgt-----------ctttgtatgac i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11452558 344 + 39895921 aacttttg-gggaaac----tggcattgcccattaaaactaat----------------aat--------ctgcataattcacttccagatatgtatatccaatagaaatatatttacaagta-cacc-aaagacatttaagag--aatgctcatatcagtatta-ttttcagtcatcccaaactggaaacaa-tttaatgttcatcatcagaaagttgtataaatatgttgtaaatactcatatattagtatatacagcatgtaactac-tatacagcaat-gaaagttgctaacagctactacat-----acaacagagatcaatctcac-aaaagttacagtgaacaaag------aaaatcaaa----tagaaaagaatatatactgtatgat i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 655324 351 - 6883506 agccactatggaggactgtttggcagttcctaagggtgttgaatacagacttgctgtgggac--------ccaggaatgccattgccag--gtatatactcagaagaactgaac-----agtgacactaatagatatctgcgcactaatgtttacagcagtgtta-ttcatgatagccaaaagctggaaacaacccaggtgtccatcaattgatgaacagataaacaaattatgg-------------agtatatacaagatg-gaatat-tatgcagtggt-aagaag---aaatagttatgaaatatccgacaacatgaatgaacctgga-ggacattatattgagtgaagaaattcagacacaaaaagacaa----------atactgtatgat i dasNov3.JH568778 C 0 I 693 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853700 1877 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=953577.000000 s hg38.chr21_GL383578v2_alt 48043 343 + 63917 accatttagag--agtctgagaggaata--aaaagtaatctatggcattagatat-caggacagtaattac---ctttggggagaaggaaggatattgggtgatggaaatgggtacaaagtgagacttcgggtgttggtaatgttctttgttgtgttat-catggaaattttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcatgtatacaattcttcaattaaaaagctcca---------------------------------------------------------------aaagaaACCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATATCTAATATAAATGAACCGATCCAATTCCAAAATTATTACATTTCTGTATTAAGCTta s panTro5.chr21 885544 343 + 33445071 accatttagag--agtctgagaggaata--aaaagtaatctatggcattagatat-caggacagtaattac---ctttggggagcaggaaggatattgggtgatggaaatgggtacaaagtgagacttcaggtgttggtaatgttctttgttgtgttat-catggaaattttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcatgtatacaattcttcaattaaaaagctcca---------------------------------------------------------------aaagaaACCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATATCTAATATAAATGAACCGATCCAATTCCAAAATTATTACATTTCTGTATTAAACTta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570184 343 + 46275980 accatttagag--agtctgagaggaata--aaaagtaatctatggcattagatat-caggacagtaattac---ctttggggagcaggaaggatattgggtgatggaaatgggtacaaagtgagacttcgggtgttggtaatgttctttgttgtgttat-catggaaattttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcatgtatacaattcttcaattaaaaagctcca---------------------------------------------------------------aaagaaACCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATATCTAATATAAATGAACTGATCCAATTCCAAAATTATTACATTTCTGTATTAAACTta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 482310 343 - 13858734 accatttagag--agtctgagaggaata--aaaagtaatctatggcattagatat-caggacagtaattac---ctttggggagaaggaaggatattgggtgatggaaatgggtacaaagtgagacttcgggtgttggtaatgttctttgttgtgttat-cgtggaaattttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcatgtatacaattcttcaattaaaaagctcca---------------------------------------------------------------aaagaaACCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATATCTAATATAAATGAACCGATCCAATCTCAAAATTATTACATTTCTGTATTAAACTta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1604501 343 + 32716333 accatttagag--agtctgagaggaata--aaaagtaatctatggcattagatat-caggacagtaattac---ctttggggagaaggaaggatattgggtgattgaaatgggtacagagtgagactttgggtgttggtaatgttctttgttgtgttag-catggaaattttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ctaattttgtgcatgtatacaattcttcaattaaaaagctcca---------------------------------------------------------------aaagaaACCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATGTCTAATATAAATGAACCAATCCAATCTCAAAATTATTACATTTCTGTATTAAAagta i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5669795 342 + 21915920 accatttagag--agtctgagaggaata--gaaagcaatctatggcattagatat-cagaacagtaattac---ctttggggagaaggaaggagattgggtgattgaactgtgtacactctc-tctctctcttgttggtaatgttctttgttgtgatat-catggaaatgttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcaTGTATACAATTCCTCACTCTCTCTCTCTCT---------------------------------------------------------------AAAGAAGCCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATatctaatactctctctctctctcaatctcaaaatcaatACATATCTGTATTAAAAGTA i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 641919 342 + 1337817 accatttagag--agtctgagaggaata--gaaagcaatctatggcattagatat-cagaacagtaattac---ctttggggagaaggaaggagattgggtgattgaactgtgtacaaagtg-gacttcaggtgttggtaatgttctttgttgtgatat-catggaaatgttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcatgtatacaattcctcaattaaaaagttcca---------------------------------------------------------------aaagaaGCCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATATCTAATATAAATGAACCAATCCAATCTCAAAATCAATACATATCTGTATTAAAAGTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 617900 342 - 3237654 accatttagag--agtctgagaggaata--gaaagcaatctatggcattagatgt-caggatagtaattac---ctttggggagaaggaaggagattgggtgattgaactgtgtacaaagtg-gactttgggtgttggtaatgttctttgttgtgatat-cattgaaattttatgagtgtgtttaactt-ttgataattcatcaaatgatata---------ccaattttgtgcatgtatacaattcctcaattaaaaagttcca---------------------------------------------------------------aaagaaGCCAACCTGCTT-------------------------------------AAAATAAATAAATGTCATTATATCTAATATAAATGAACCAATCCAATCTCAAAATCAATACATATCTGTATTAAAAGTA i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18341878 446 - 38779656 acaatttagag--agtgtttaaaaaatagcaaaactaatctatggctttagattc-caggacaatgattacaaattttggagaagaggaaggaaagtggatgattgaag-agatacgaagtgagatttcaggggttaaccaggttctatttcataactg-catgaggatttcattgatgtgtctaccttactgataattcagcaagtgttata---------ctga-tctgttcatatatgaaatacttcaattgaaaacttTTGGTATATGGCACATTTCTTAGGGATGAGACACAATTATAAGAGGTACATTAGCATTTGCTAGATAATGTACCTAACCTAATTCTTTGTACCCTCAATGAATTCCAAACAATAAAAAAGAAAGAAAAATAAATCTCATTATGTCCAATATATGTGAACCAACCCAATGTCCAAATTGCTA-ACTTTTGTATGaataata i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11452902 345 + 39895921 tccatttagagaaagcataaaaaggggc--aaaattattctatggcattagacatacaggacattgattac---cttgggggaggagaaaagg-agtggataattggaatgagtacaga----gacttcaggtggtgtcggtgttctttgtcatgacctgaatggggatttcatgaacgtgttcacttt-ttgctaattcctcaggttgtacagtgttctatgcacttttctgaatatatataatacatcaact--aaagtttca---------------------------------------------------------------aaagaaaCTGACCATCTT-------------------------------------A----AAATAAATCCCATTCTGTCCAATAACAATGAACCAAACTGATCTCTAAATTTTTATACTTCTGTAAGAACACTA i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16853700 1877 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e dasNov3.JH568778 655675 693 - 6883506 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=570133.000000 s hg38.chr21_GL383578v2_alt 48386 150 + 63917 ttaatactctttatttgcatggtagtcaacaattttcagagcattcttaagtaaactatgtcatttagcttcatgccatcataatgaattattatacatttaattttagatttgtttaaaaaactggaata----attctttcagagagttgcc s panTro5.chr21 885887 150 + 33445071 ttaatactctttatttgcatggtagtcaacaattttcagagcattcttaagtaaactatgtcatttagcttcatgacatcataatgaattattatacatttaattttagatttgtttaaaaaactggaata----attctttcagagagttgcc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570527 150 + 46275980 ttaatactctttatttgcatggtagtcaacaattttcagagcattcttaagtaaactatgtcatttagcttcatgacaTCATAATGAACTATTATACATTTAATTTTAGATTTGTTTAAAAAACTGGAATA----ATTCTTTCAGAGAGTTGCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 482653 150 - 13858734 ttaatactctttatttgcatggtagtcaacaattttcagagcattcttaagtaaactatgtcatttagcttcatgacatcataatgaattattatacatttaattttagatttgtttaaaaaactggaata----attctttcagagagttgcc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1604844 150 + 32716333 ttaatactctttatttgcatagtattcaacaattttcagagcactcttaagtaaattatgtcatttagcttcatgacatcataatgaattattatgcatttaattttagatttgtttaaaaaactggaata----attctttcagagagttgcc i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5670137 148 + 21915920 TTAATACTCTTTATTTGCATGGAGGTCAACAATTTTCACAGCACTC--AAGTAAATTATGTCATTTAGCTTCATGATGTCATAATGAATTATTATGCATTTAATTTTAGTTTTGTCTAAAAAACTGGAATA----ATTCTTTCagagagttgcc i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 642261 148 + 1337817 TTAATACTCTTTATTTGCATGGAGGTCAACAATTTTCACAGCACTC--AAGTAAATTATGTCATTTAGCTTCATGACGTCATAATGAATTATTATGCATTTAATTTTAGTTTTGTCTAAAAAACCGGAATA----ATTCTTTCagagagttgcc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 618242 148 - 3237654 TTGATACTCTTTATTTGCATGGAGGTCAACAATTTTCACAGCACTC--AAGTAAATTATGTCATTTAGCTTCAGGACGTCATAATGAATTATTATGCATTTAATTTTAGGTTTGTCTAAAAAACCGGAATA----ATTCTTTCAGAGAGTTGCC i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16855577 149 + 47401472 TTAATGCTCTTGATTTGCATGATAGTCAACAATATCCAGTGTACTCTAAAGT-AATTATTTCATTTACCTTTATGGCATCATAATGAAGTAGTCTACAGTCAATTTTAGACTTGTTGGAAAAACTGGAATA----ATTCTTTCTGAGAGTTTTC i micMur3.chr31 I 1877 C 0 s otoGar3.GL873528 18342324 150 - 38779656 ttgatgctttttatttgcgcaatagtccacagtattcagagcactctaaagtaaattatttcacttAGCTTCCTGGCATTATAATTAAATATTCTGAAATTAATTTTAGACTTGTTGAAAAAGCTGGAATA----ATTCTTTCAAAGGGTTTCC i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11453247 154 + 39895921 TTGATactccttatttgtatagtatccagcaattttcagagaactctcaagtaaattatctcatttagcttccggccatcataatgaagtattgaacaggtaattttaGACTTGTTGAAAAAAAAAAAAAAAAAGAATGACTCAGATAGCTGTC i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e dasNov3.JH568778 655675 693 - 6883506 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=692160.000000 s hg38.chr21_GL383578v2_alt 48536 201 + 63917 ctgtgacatttgtggcaaataatagagttgagactagaacccaaggctattgagt-cTTCACATA----CCTTTCACCGTACTTA-CTGATC----------CTGTAATCTCAGGATCTTGAATAGA-TT--TTTTTTTTCTTATGTTTTATTCCCTCA--GAATCTTTCTGTTAGACAGCGTATCCTAAAAAACCAAACTAGGCAATTTATTAGTGAATGT s panTro5.chr21 886037 200 + 33445071 ctgtgacatttgtggcaaataatagagttgagactagaacccaaggctattgagt-cttcacata----cctttcactgtactta-ctgATC----------CTGTAATCTCAGGATCTTGAATAGA-TT--TTTTTTT-CTTATGTTTTATTCCCTCA--GAATCTTTCTGTTAGACAGCGTATCCTAAAAAGCCAAACTAGGCAATTTATTAGTGAATGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570677 195 + 46275980 CTTTGACATTTGTGGCAAATAATA-----GAGACTAGAACCCAAGGCTATTGAGT-CTTCACATA----CCTTTCACTGTACTTA-CTGATC----------CTGTAATCTCAGGATCTTGAATAGA-TT--TTTTTTT-CTTATGTTTTATTCCCTCA--GAATCTTTCTGTTAGACAGCGTATCCTAAAAAACCAAACTAGGCAATTTATTAGTGAATGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 482803 200 - 13858734 ctgtgacatttgtggcaaataatagagttgagactagaacccaaggctattgagt-cttcacata----cctttcactgtactta-ctgGTC----------CTGTAATCTCAGGATCTTGAATAGA-TT--TTTTTTT-CTTATGTTTTATTCCCTCA--GAATCTTTCTGTTAGACAGCGTATCCTAAAAAACCAAACTAGGCAATTTATTAGTGAATGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1604994 205 + 32716333 ctgtgacatttgtggcaaataatagaattgggactagaatccaaggctattgagt-cttcacatatctttctttcactgtactta-ctggtt----------cTGTAATATCAGGATCTTGAATAGA-TT--TTTTTTTTCTTATGTTTTATTCCCTCA--GAATCTTTCTGTTAGATAGTGTATCCTAAAAAACCAAACTAGGCAATTCATTAGTGAATGT i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5670285 199 + 21915920 ctgtgac--ttgcggcaaataatagagttgagactagaacccaaggctattgagt-cttcacatacctttctttcactgTACTTA-CTGGTC----------CTATAATCTCAGGATCTTGGATAGA-TT--TTTTTTTTCTTACATTTTATTCCCTCA--GAATCTTTCTATT----AGTGTATGCTAAAAAACCAAACAAGGCAATTTATTAGTGAATGT i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 642409 199 + 1337817 ctgtgac--ttgcggcaaataatagagttgagactagaacccaaggctattgagt-cttcacatacctttctttcactgTACTTA-CTGGTC----------CTATAATCTCAGGATCTTGGATAGA-TT--TTTTTTTTCTTACATTTTATTCCCTCA--GAATCTTTCTATT----AGTGTATGCTAAAAAACCAAACAAGGCAATTTATTAGTGAATGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 618390 200 - 3237654 CTGTGAC--TTGCAGCAAATAATAGAGTTGAGACTAGAACCCAAAGCCATTGAGT-CTTCACATACCTTTCTTTCACTGTACTTA-CTGGTC----------CTGTAATCTCAGGATCTTGGATAGATTT--TTTTTTTTCTTGCGTTTTATTCCCTCA--GAATCTTTCTATT----AGTGTATGCTAAAAAAACAAATGAGGCAATTTATTAGTGAATGT i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16855726 212 + 47401472 CTTTGCCATTTATGGCAGGTGACAGAGTTGGGCTTGGAACCCAAAGCAATTGAGT-CTTCATATAGCTTTCTTTCACTATACTTG-CTGGGCTCC----AACCTGTAATCTCAGGACCATGGATAGA-TATTTTTTTTTTCTTACATTCTATTACATCA--GAATATTTCTGTGTCATAGT-TACCCTAAGAAACCAGTCTAGGCAATTTATTAGTGAATGT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18342474 198 - 38779656 CTTTGCTATTTGTGGCAAGAAGCTGTGTTGGGATTGAAACCCAAAGCAATT------TTCAGGTAACTTTCTTTCACTATACTTACCTGGGCTCC----ACGGTATAATCTCAGGACCTTAAATAGA-TG----TTTCTTCTTACATCCTATTCCCTCA--GAGTCTTTCTGTTTCATAGC-T------AGAAGCCTGTCTAGGCAATTTATTAGTGAATGT i otoGar3.GL873528 C 0 I 12 s canFam3.chr31 11453401 212 + 39895921 CCTTGTCATTTGTGGCAAACAATGGAGTTGGGATTGGAACCCCAGGCCAATGACT-CTTCACATAGCTTTCTTTCACTATAGATT-CTTGGCTCTGCAGACTATATAACCTCGAGACCTTGGACAGA-TT--TTATT---CTTATGCTTCATTCCCTAATGAAACATTCTTGTCTCATATC-TATCCTAAAGAACAGGTCCAGACAACTTATGAGTGAATT- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656368 201 - 6883506 CTTTGTCTTGTGTGGCAAATAAAGGAGTCAGGACTGAATCCAGATGCTCTTGGGCACTTTGTACA-CTTTATTTCATTGAACGTG-CTGGGCTCGCA-----ATATAATTTCAGGA-CTCAGATAGA-TT--TTTTTTT--CTGTGTTTCATCCCCTCA--GAAACTTTC-ATCTCATAGC-TATCT---AGGAACTATCTAGGCTAATC-TTACTGAATTT i dasNov3.JH568778 I 693 C 0 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=7823.000000 s hg38.chr21_GL383578v2_alt 48737 2 + 63917 AT s panTro5.chr21 886237 2 + 33445071 AT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570872 2 + 46275980 AT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483003 2 - 13858734 GT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605199 2 + 32716333 AT i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5670484 2 + 21915920 AT i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 642608 2 + 1337817 AT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 618590 2 - 3237654 AT i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16855938 2 + 47401472 AT i micMur3.chr31 C 0 I 269 s canFam3.chr31 11453613 2 + 39895921 AT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656569 2 - 6883506 GT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=46349.000000 s hg38.chr21_GL383578v2_alt 48739 14 + 63917 GAGTAAATCACATT s panTro5.chr21 886239 14 + 33445071 GAGTAAATCACATT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570874 14 + 46275980 GAGTAAATCACATT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483005 14 - 13858734 GAGTAAATCACATT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605201 14 + 32716333 GAGTAAATCACATT i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5670486 14 + 21915920 GAGTAAATCACATT i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 642610 14 + 1337817 GAGTAAATCACATT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 618592 14 - 3237654 GAGTAAATCACATT i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11453615 14 + 39895921 GAGTTAACTATATT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656571 14 - 6883506 GTGTTAACTATGTT i dasNov3.JH568778 C 0 I 89 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=15142.000000 s hg38.chr21_GL383578v2_alt 48753 6 + 63917 GTAAAA s panTro5.chr21 886253 6 + 33445071 GTAAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570888 6 + 46275980 GTAAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483019 6 - 13858734 GTAAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605215 6 + 32716333 GTAAAA i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5670500 6 + 21915920 CTAAAA i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 642624 6 + 1337817 CTAAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 618606 6 - 3237654 CTAAAA i colAng1.NW_012116933v1 C 0 C 0 s canFam3.chr31 11453629 6 + 39895921 TTAAAA i canFam3.chr31 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e dasNov3.JH568778 656585 89 - 6883506 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=1617316.000000 s hg38.chr21_GL383578v2_alt 48759 682 + 63917 TAGGtgcaaaccaaaaataaaattccaagctccccagccaactgactggaaccccctctcaaccaaggagattccaaagaaacctgagaaactagttcaggccgtgataggaagtgagggtcagacgtgcttcattataccctgtcccttctggagtgttcaggcacaactgaccagcattaacattaaaacagagatattaagactgacagaacagactctttgtagcaagaagatactaaattccaacctgactccaatgtagcattacatgacagatagcagatcctggaggaaatatacatcccaaaatatatttctttgtcatattttggaatggacccacagagctgtctcttgtgagggaaatttgaattctgtaaagactctccttcccttattaggtctttaccagagagtctggcaccttttaaggcccaattagagacattcacgtctattctctctgaagcctgctacctggaggcttcatctacataagaaccttggcttccacaactcccaccacccttaccttaactcaagcagatttaaactctttagacaaagcttaattctttcaaccaactgccaatcagaaaatcttttaatctacctatgacctagaagctcaccctgcacccccttcccaagttgcttcaagatatcccacctttctggg s panTro5.chr21 886259 682 + 33445071 TAGGtgcaaaccaaaaataaaattccaagctccccagccaactgactggaaccccctctcaaccaaggagattccaaagaaacctgagaaactagttcaggccgtgataggaagtgagggtcagacgtgcctcattataccctgtcccttctggagtgttcaggcacaactgaccagcattaacattaaaacagagatattaagactgacagaacagactctttgtagcaagaagatactaaattccaacctgactccagtgtagcattacatgacagatagcagatcctggaggaaatatacatcccaaaatatatttctttgtcatattttggaatggacccacagagctgtctcttgtgagggaaatttgaattctgtaaagactctccttcccttattaggtctttaccagagagtctggcaccttttaaggcccaattagagacattcacatctattctctctggagcctgctacctggaggcttcatctacataagaaccttggcttccacaactcccaccacccttaccttaactcaagcagatttaaactctttagagaaagcttaattctttcaaccaactgccaatcagaaaatcttttaatctacctatgacctagaagctcaccctgcacccccttcccaagttgcttcaagatatcccacctttctggg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14570894 682 + 46275980 TAGGtgcaaaccaaaaataaaattccaagctccccagccaactgactggaaccccctctcaaccaaggagattccaaagaaacctgagaaactagttcaggccgtgataggaagtgagggtcagacgtgcctcattataccctgtcccttctggagtgttcaggcacaactgaccagcattaacattaaaacagagatattaagactgacagaacagactctttgtagcaagaagatactaaattccaacctgactccagtgtagcattacatgacagatagcagatcctggaggaaatatacatcccaaaatatatttctttgtcatattttggaatggacccacagagctgtctcctgtgagggaaatttgaattctgtaaagactctccttcccttattaggtctttaccagagagtctggcaccttttaaggcccaattagagacattcacatctattctctctgaagcctgctacctggaggcttcatctacataagaaccttggcttccacaactcccaccacccttaccttaactcaagcagatttaaactctttagacaaagcttaattctttcaaccaactgccaatcagaaaatcttttaatctacctatgacctagaagctcaccctgcacccccttcccaagttgcttcaagatatcccacctttctggg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483025 682 - 13858734 TAGGtgcaaaccaaaaataaaattccaagctccccagccaactgactggaaccccctctcaaccaaggagattccaaagaaacttgagaaactagttcaggctgtgataggaagtgagggtcagacgtgcctcattataccctgtcccttctggagtgttcaggcacaactgactagcattaacattaaaacagagatattaagactgacagaacagactctttgtagcaagaagatactaaattccagcctgactccagtgtagcattacatgacacatagcagaccctggaggaaatgtacatcccaaaatatatttctttgtcatattttggaatggacctacagagctgtctcttgtgagggaaatttgaattctgtaaagactctccttcccttgttaggtctttaccagggagtctggcaccttttaaggcccaattagagatattcacatctattctctctgaagcctgctacctggagtcttcatctacataagaaccttggcttccacaactcccaccacccttaccttaactcaagcagatttaaactctttagacaaagcttaattctttcaaccaactgccaatcagaaaatctttgaatctacctatgacctagaaactcaccctgcacccccttcccaagttgcttcaagatatcccacctttctggg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605221 682 + 32716333 TAGGtgcaaaccaaaaataaaattccaagctccccagccaactgactggaacctcctctcaaccaaggagattccaaagaaacctgagaaactagttcaggccatgataggaagtgagggtcagatgtgcctcattataccctgtcccttctggagtgttcaggcaccactgaccagcattaacattaaaacagagatattaagactgacagaacagactctttgtagcaagaagatagtaaattccaacctgactccagtgtagcattacatgacagatagcagaccctggaggaaatatacatcccaaaatatatttctttgtcatattttggaatggacccacagagctgtctcttgtgagggaaatttgaattctgtaaagactctccttcccttattaggtctttaccagagagtctggcaccttttaaggcccaattagagacattcacatctattctctccgaagcctgctaactggaggcttcatccacgtaagaaccttggcttccgcaactcccaccaaccttaccttaactcaagcagatttaaactctttagacaaagcttaattctttcaaccaactgccaatcagaaaatctttgaatctacctatgacctagaagctcaccctgcactcccttcccaagctgcttcaagttatcccaactttcaggg i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5670506 680 + 21915920 TAAGtgcaaaccaaaaataaaattccaggctccccagccaactgactggaaccccctctcaaccaaggagattccaaagaaatctgaaaaactagttcaggccatgataggaagtgagggtcagacatgcctctctctctctcttcccttctgga--gttcaggcacaactgaccagcattagtattaaaacagagatattaagactaacagaagagactctttgtagcaacaaaatactaaattccagcctgactccagtgtagcattacctgacagttagcagaccctggaggaaatatacctcccaaaatatctctctctctctctttttggaagggacccacagaactgtctcttgtgagggaaatgcgaatctctctctctctctccttcttttaataggtctttacaagagagtcaggcaccttttaaggtctctctctctctcttcacatctattctctctgaagctttctacctgaaggcttcatctacataagaaccttggcttccacaactcctgccacccttaccttaactcaagcagatttaaaccctttagacaaagcttaattctttcaaccaactgccaatcagaaaatctttgaatccacctatgacctagaagctcaccctgcaccctctccccaagctgcttcaagatatcccacctttctggc i cerAty1.NW_012002954v1 C 0 I 13 s manLeu1.NW_012107264v1 642630 680 + 1337817 TAAGtgcaaaccaaaaataaaattccaggctccccagccaactgactggaaccccctctcaaccaaggagattccaaagaaatctgaaaaactagttcaggccatgataggaagtgagggtcagacatgcctcattataccctgtcccttctgga--gttcaggcacaactgaccagcattagtattaaaacagagatattaagactaacagaagagactctttgtagcaacaaaatactaaattccagcctgactccagtgtagcattacctgacagttagcagaccctggaggaaatatacctcccaaaatatatttctttgacatattttggaatggacccacagaactgtctcttgtgagggaaatgcgaattctgtaaagactctccttcttttaataggtctttacaagagagtcaggcaccttttaaggtccaataagagacattcacatctattctctctgaagccttctacctgaaggcttcatctacataagaaccttggcttccacaactcctgccacccttaccttaactcaagcagatttaaaccctttagacaaagcttaattctttcaaccaactgccaatcagaaaatctttgaatccacctatgacctagaagctcaccctgcaccctctccccaagctgcttcaagatatcccacctttccggg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 618612 680 - 3237654 TAAGtgcaaaccaaaaataaaattccaggctccccagccaactgactgggaccccctctcaaccaaggagattccaaagaaacctgaaaaactagttcaggccatgataggaagtgagggtcagacatgcctcattataccctgtcccttctgga--gttcaggcccaactgaccagcattagcattaacacagagttattaagactaacggaagagactctttgtagcaacaaaatactaaattccagcctgactccagtgtagcattacctgacagttagcagaccctggaggaaatatacctcccaaaatatatttctttgacatattttggaatgaacccacagagctgtctcttgtaagggaaatgcgaattctgtaaagactctccttcttttaataggtctttacaagacagtcaggcaccttttaaggtccaataagagacattcacatctattctctctgaagccttctacctggaggcttcatctacataagaaccttggcttccacaacttccttcacccttaccttaactcaagcagatttaaactctttaggcaaagcttaattctttcaaccaactgccaatcagaaaatctttgaatccacctatgacctagaagctcaccctgcaccctctccccaggctgcttcaagacatcccacctttctggg i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e dasNov3.JH568778 656585 89 - 6883506 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=25788.000000 s hg38.chr21_GL383578v2_alt 49441 13 + 63917 ctgaaccaatgta s panTro5.chr21 886941 13 + 33445071 ctgaaccaatgta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571576 13 + 46275980 ctgaaccaatgta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483707 13 - 13858734 ctgaaccaatgta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605903 13 + 32716333 ctgaaccaatgta i nomLeu3.chr25 C 0 C 0 s manLeu1.NW_012107264v1 643310 13 + 1337817 ctgaaccaatgta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 619292 13 - 3237654 ctgaaccaatgta i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e dasNov3.JH568778 656585 89 - 6883506 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e cerAty1.NW_012002954v1 5671186 13 + 21915920 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=119157.000000 s hg38.chr21_GL383578v2_alt 49454 50 + 63917 taccttacatgtattgatttatgtctctgcctgtaatttctgtcccatta s panTro5.chr21 886954 50 + 33445071 taccttacatgtattgatttatgtctctgcctgtaatttctgtcccatta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571589 50 + 46275980 taccttacatgtattgatttatgtctctgcctgtaatttctgtcccatta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483720 50 - 13858734 taccttacatgtattgatttatgtctctgcctgtaatttctgtcccatta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605916 50 + 32716333 taccttatgtgtattgatttatgtatctgcctgtaatttctgtcccatta i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671199 50 + 21915920 taccttacatgtattgatttatgtatctgcttgcaatttctgtcccactc i cerAty1.NW_012002954v1 I 13 I 13 s manLeu1.NW_012107264v1 643323 50 + 1337817 taccttacatgtattgatttatgtatctgcttgcaatttctgtcccatta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 619305 50 - 3237654 taccttacatgtattgatttatgtctctgcttgcactttctgtcccatta i colAng1.NW_012116933v1 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e dasNov3.JH568778 656585 89 - 6883506 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=19248.000000 s hg38.chr21_GL383578v2_alt 49504 11 + 63917 aaatgtataag s panTro5.chr21 887004 11 + 33445071 aaatgtataaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571639 11 + 46275980 aaatgtataaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483770 11 - 13858734 aaatgtataaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605966 11 + 32716333 aaatgtataca i nomLeu3.chr25 C 0 C 0 s manLeu1.NW_012107264v1 643373 11 + 1337817 aaatgtataaa i manLeu1.NW_012107264v1 C 0 I 3 s colAng1.NW_012116933v1 619355 11 - 3237654 aaatgtataaa i colAng1.NW_012116933v1 C 0 I 1 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e dasNov3.JH568778 656585 89 - 6883506 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e cerAty1.NW_012002954v1 5671249 13 + 21915920 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=280381.000000 s hg38.chr21_GL383578v2_alt 49515 120 + 63917 atcaagtcgtaatctaatcaccttgggctcatgttctcatggcctcctgaggccgtgtcacgggtcacagtcctcatatttggctcagaataaaccccttcaaatattttacagactttg s panTro5.chr21 887015 120 + 33445071 atcaagtcgtaatctaatcaccttgggctcatgttctcatggcctcctgaggctgtgtcacgggtcacagtcctcatatttggctcagaataaacctcttcaaatattttacagactttg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571650 120 + 46275980 atcaagtcgtaatctaatcaccttgggctcatgttctcatggcctcctgaggccgtgtcacgggtcacagtcctcatatttggctcagaataaacctcttcaaatattttacagactttg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483781 120 - 13858734 atcaagtcgtaatctaatcgccttgggctcatgttctcatggcctcctgaggccgtgtcacgggtcatggtcctcatatttggctcagaataaacctcttcaaatattttacagactttg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1605977 120 + 32716333 atcaagtcgtaaccaaatcaccttgggctcatgttctcatggcctcctgaggccgtgtcatgggtcctggtcctcatatttggctcagaataaacctcttcaaatattttacagactttg i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671262 120 + 21915920 atcaagtcataacctgatcaccttgggcacatgttctcctggcctcctgaggccatgtcacaggtcatggtcctcatatttggctcagaataaacctcttcagatgttttacagacttgc i cerAty1.NW_012002954v1 I 13 C 0 s manLeu1.NW_012107264v1 643387 119 + 1337817 atcaagtcataacctaatcaccttgggcacatgttctcctggcctcctgagg-catgtcacaggtcatggtcctcatatttggctcagaataaacctcttcagatgttttacagacttgc i manLeu1.NW_012107264v1 I 3 C 0 s colAng1.NW_012116933v1 619367 120 - 3237654 atcaagtcgtaacctaatcaccttgggcatatgttctcctggcctcctgaggccatgtcacaggtcatggtcctcatatttggctcggaataaacctcttcagatattttacagactttg i colAng1.NW_012116933v1 I 1 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e otoGar3.GL873528 18342672 12 - 38779656 I e dasNov3.JH568778 656585 89 - 6883506 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=22318.000000 s hg38.chr21_GL383578v2_alt 49635 10 + 63917 acatttttca s panTro5.chr21 887135 10 + 33445071 acatttttca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571770 10 + 46275980 acatttttca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483901 10 - 13858734 acatttttca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606097 7 + 32716333 acatttt--- i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671382 10 + 21915920 acatttttca i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 643506 10 + 1337817 acatttttca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 619487 10 - 3237654 acatttttca i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18342684 7 - 38779656 ACATTTT--- i otoGar3.GL873528 I 12 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e dasNov3.JH568778 656585 89 - 6883506 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=12919.000000 s hg38.chr21_GL383578v2_alt 49645 5 + 63917 tcaac s panTro5.chr21 887145 5 + 33445071 tcaac i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571780 5 + 46275980 tcaac i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483911 5 - 13858734 tcaac i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606104 5 + 32716333 tcAAC i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671392 5 + 21915920 ttaac i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 643516 5 + 1337817 ttaac i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 619497 5 - 3237654 ttaac i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18342691 3 - 38779656 --AAA i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 656674 5 - 6883506 TTAAA i dasNov3.JH568778 I 89 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e canFam3.chr31 11453635 0 + 39895921 C e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=805370.000000 s hg38.chr21_GL383578v2_alt 49650 235 + 63917 aGGAGCTTCTTT-AAAAAATTCTCTCACCCACAGGTAAGAT-AGGTACCAAGGCAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTATGTTATTTTCAGATATGTGGCCTTCAGATCACATTATACTAGTGAGTAATTATGCTTGTATGTAGACTGAGGTTGGTTTGAGGGAAAACAATCATTAACAAAATAATGCATTTGTTACTTGGAATTCTAGAAGTTTTCTGAG s panTro5.chr21 887150 235 + 33445071 aGGAGCTTCTTT-AAAAAATTCTCTCACCCACAGGTAAGAT-AGGTACCAAGGCAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTATGTTATTTTCAGATATGTGGCCTTCAGATCACATTATACTAGCGAGTAATTATGCTTATATGTAGACTGAGGTTGGTTTGAGGGAAAACAATCATTAACAAAATAATGCATTTGTTACTTGGAATTCTAGAAGTTTTCTGAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14571785 235 + 46275980 aGGAGCTTCTTT-AAAAAAATCTCTCACCCACAGGTAAGAT-AGGTACCAAGGCAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTATGTTATTTTCAGATATGTGGCCTTCAGATCACATTATACTAGCGAGTAATTATGCTTATATGTAGACTGAGGTTGGTTTGAGGGAAAACAATCATTAACAAAATAATGCATTTGTTACTTGGAATTCTAGACGTTTTCTGAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 483916 235 - 13858734 aGGATCTTCTTT-AAAAAATTCTCTCACCCACAGGTAAGAT-AGGTACCAAGGCAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTATGTTATTTTTAGATATGTGGCCTTTAGATCACATTATACTAGCGAGTAATTATGCTTATATGTAGACTGAGGTTGGTTTGAGGGAAAACAATCATTAACAAAATAATGCATTTGTTACTTGGAATTCTAGAAGTTTTCTGAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606109 232 + 32716333 AGGAGCTTCTTT-AAAAAATTCTCTCACCCACAGGTGAGAT-AGGTACCATGACAG-CTTGATCAC-----------AGTGGTTTGGAGTA----------------------CTTTGTT---TGACTATGTTATTTTCAGATATGTGGCCTTCAGATCACATTATACTAGCGAGTAATTATGCTTATATGTAGACTCAGGTTGGTTTGAGGGAAAACAATCATTAACAAAATAATGCATTTGTTACTTGGAATTCTAGAAGTTTTCTGAG i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671397 236 + 21915920 aGGAGCTTCTTTAAAAAAATTCTCTCACCCCCAGGTGAGAT-AGCTACCATGACAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTCTCTCTCTCTCTCTTATATGGCCTTCAGATCACATTATAATAGCGGGTAATTATGCTTATATGTAGACTGAGGTTGGTTTGAGGGAAAACAATCATTAACAAAAGAATGCATTTGCTACTTGGAATTCTAGAAGTTTTCTGAG i cerAty1.NW_012002954v1 C 0 I 2 s manLeu1.NW_012107264v1 643521 236 + 1337817 aGGAGCTTCTTTAAAAAAATTCTCTCACCCCCAGGTGAGAT-AGCTACCATGACAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTATGTTATTTTCAGATATATGGCCTTCAGATCACATTATAATAGCGAATAATTATGCTTATATGTAGACTCAGGTTGGTTTGAGGGAAAACAATCATTAACAAAAGAATGCATTTGCTACTTGGAATTCTAGAAGTTTTCTGAG i manLeu1.NW_012107264v1 C 0 I 6577 s colAng1.NW_012116933v1 619502 236 - 3237654 aGGAGCTTCTTTAAAAAAATTCTCTCACCCGCAAGTGAGAT-AGATACCATGACAG-CTTGATCAC-----------AGTGGTTTGGAATA----------------------CTTTGTTTTCTGACTACATTATTTTCAGATATGTGGCCTTCAGATCACATTATACTAGCGAGTAATTATGCTTATATGTAGACTCAGGTTGGTTTGAGGGAAAACAATCATTAACAAAAGAATGCATTTGCTGCTTGGAATTCTAGAAGTTTTCTGAG i colAng1.NW_012116933v1 C 0 I 2 s otoGar3.GL873528 18342694 236 - 38779656 AGAAGCTTCTTT-AAAAACTTTTCTTACTCACAGGTGAGATCAGGCACAGTGGCTG-TTGGATCAC-----------AATTGTTTGGAGCA----------------------TTTTGCTTTTTGGCTTTGTTACCTTCAGACACGTGGCCTTGTGATCACATTATAATAGCTAGTAACCATGATTGTGTGCGTACTCAGGTTTGTTCAAGGGGAACTGATCCTTTACAAATGAATGCATTTATTAATCTGAATTCCGAAAGATTTTTGAA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11453635 262 + 39895921 AGAGCCTTCTTA-GGAAAATTTTCTCACTCACAGGTGAGATTATACACCATG-CAG-TTTGATTATTGGAGGGAAGGAGAGGAAGGGAGTAGAAGGAGGGAAAAAGGGAAATGCTTTGTTTT-AGACT---TTACTTTCAAATATGTGGCCTTGGTATCATGTTATAATACCCAATAAATATG--TATGTGTAGACTCAGGTTAGTTTGAAGGGAACCAATCCTCTTCATATGAATGCATTTATTATTCAGAATTCTAGAAGTTGCCTGAC i canFam3.chr31 C 0 I 17 s dasNov3.JH568778 656679 219 - 6883506 AGGAGC--CTTA-GAAAACTTTTCTCACCCTCAGGTAAGATCAGGTACCATGGCAGTTTTGATCAT-----------AGTTGTGGGGAATA----------------------CTTTGCTTTTTG-CTATGTTCT---------------CTTCAGATCACCTTATAGCAGCTAATAGGTATGTTCATGTTTAGATCCAGGTTGTTTGGAGAGGAACAAGTCATCTGCACCTGAATTCATTCATTACTAAGAATTCTTGATGTTTACTGAG i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=6669.000000 s hg38.chr21_GL383578v2_alt 49885 2 + 63917 CT s panTro5.chr21 887385 2 + 33445071 CT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572020 2 + 46275980 CT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484151 2 - 13858734 CT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606341 2 + 32716333 CT i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671635 2 + 21915920 CT i cerAty1.NW_012002954v1 I 2 C 0 s colAng1.NW_012116933v1 619740 2 - 3237654 CT i colAng1.NW_012116933v1 I 2 C 0 s otoGar3.GL873528 18342930 2 - 38779656 CT i otoGar3.GL873528 C 0 I 17 s canFam3.chr31 11453914 2 + 39895921 CA i canFam3.chr31 I 17 C 0 s dasNov3.JH568778 656898 2 - 6883506 CT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16855940 269 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e manLeu1.NW_012107264v1 643757 6577 + 1337817 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=5500.000000 s hg38.chr21_GL383578v2_alt 49887 1 + 63917 C s panTro5.chr21 887387 1 + 33445071 C i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572022 1 + 46275980 C i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484153 1 - 13858734 C i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606343 1 + 32716333 C i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671637 1 + 21915920 C i cerAty1.NW_012002954v1 C 0 I 15 s colAng1.NW_012116933v1 619742 1 - 3237654 C i colAng1.NW_012116933v1 C 0 I 15 s micMur3.chr31 16856209 1 + 47401472 C i micMur3.chr31 I 269 C 0 s otoGar3.GL873528 18342949 1 - 38779656 C i otoGar3.GL873528 I 17 C 0 s canFam3.chr31 11453916 1 + 39895921 C i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656900 1 - 6883506 C i dasNov3.JH568778 C 0 I 17 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e manLeu1.NW_012107264v1 643757 6577 + 1337817 I e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=166687.000000 s hg38.chr21_GL383578v2_alt 49888 35 + 63917 AAAGTAC----AGGGCAAGAGAAGTGGAAAGAGGTCAAA s panTro5.chr21 887388 35 + 33445071 AAAGTAC----AGGGCAAGAAAAGTGGAAAGAGGTCAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572023 35 + 46275980 AAAGTAC----AGGGCAAGAGAAGTGGAAAGAGGTTAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484154 35 - 13858734 AAAGTAC----AGGGCAAGAGAAGTGGAAAGAGGTCAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606344 35 + 32716333 AAAGTAC----AGGGCGAGAGAAGTGAAAAGAGGTCAAA i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671653 35 + 21915920 AAAGTAC----AGGGCAAGAGAAGTGGAAAGAGGTCAAA i cerAty1.NW_012002954v1 I 15 C 0 s manLeu1.NW_012107264v1 650334 35 + 1337817 AAAGTAC----AGGGCAAGAGAAGTGGAAAGAGGTCAAA i manLeu1.NW_012107264v1 I 6577 C 0 s colAng1.NW_012116933v1 619758 35 - 3237654 AAAGTAC----TGGGTTAGAGAGGTGGAAAGAGACCAAA i colAng1.NW_012116933v1 I 15 C 0 s micMur3.chr31 16856210 35 + 47401472 AAAGTAC----AGGGCTAGAGAAGTGGAAAGAGGTTAAA i micMur3.chr31 C 0 I 320 s otoGar3.GL873528 18342950 35 - 38779656 AAAGTAC----AGGGCTAGAGAAGTACAAAGAAGTCAAA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11453917 39 + 39895921 AAAATACATTTAGGGTTAGACATGTGGAAAGAGATCAAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656918 35 - 6883506 CAAGTGC----ATAACTAGAGAAGTGGAAGGAGGTCAAG i dasNov3.JH568778 I 17 C 0 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=156161.000000 s hg38.chr21_GL383578v2_alt 49923 45 + 63917 TGTAGACATCTGAAGATATACTCATCTCGCCACAGGTATGCTGGG s panTro5.chr21 887423 45 + 33445071 TGTAGACATCTGAAGATACACTCATCTCGCCACAGGTATGCTGGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572058 45 + 46275980 TGTAGACATCTGAAGATATACTCATCTCGCCACAGGTATGCTGGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484189 45 - 13858734 TGTAGACATCTGAAGGTATACTCATCTCGCCACAGGTATGCTGGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606379 44 + 32716333 TGTAGACA-CTGAAGATATAGTCATCTCGCCACAGGTATGCTGGG i nomLeu3.chr25 C 0 C 0 s cerAty1.NW_012002954v1 5671688 45 + 21915920 TGTAGACACCTGAAGATATAGTCATCTCGCCACAGGTATGCTGGG i cerAty1.NW_012002954v1 C 0 C 0 s manLeu1.NW_012107264v1 650369 45 + 1337817 TGTAGACACCTGAAGATATAGTCATCTCGCCACAGGTATGCTGGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 619793 45 - 3237654 TGTAAACACCTGAAGATATAGTCATCTCGCCACAGGTATGCTGGG i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18342985 45 - 38779656 TGTAGAAACCTGCAGCCCTAGTCATCCAGCCACAGGTATCCTCAG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11453956 45 + 39895921 TATAGAGGACTATTGTTCTAGTCGTCCTACCACAGATATCCTTGG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656953 45 - 6883506 CATAGAGGCCCACAGCTCTAGTCATCCTGGCACAGGTATCCCTGG i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I e macFas5.chr3 159484025 1032 - 192294377 I a score=20331.000000 s hg38.chr21_GL383578v2_alt 49968 5 + 63917 ATTTT s panTro5.chr21 887468 5 + 33445071 ATTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572103 5 + 46275980 ATTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484234 5 - 13858734 ATTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606423 5 + 32716333 ATTTT i nomLeu3.chr25 C 0 C 0 s macFas5.chr3 159485057 5 - 192294377 ATTTT i macFas5.chr3 I 1032 I 2 s cerAty1.NW_012002954v1 5671733 5 + 21915920 ATTTC i cerAty1.NW_012002954v1 C 0 I 2438 s manLeu1.NW_012107264v1 650414 5 + 1337817 ATTTC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 619838 5 - 3237654 ATTTC i colAng1.NW_012116933v1 C 0 I 2343 s otoGar3.GL873528 18343030 5 - 38779656 ATGTG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454001 5 + 39895921 ATTTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 656998 5 - 6883506 CTTTT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e macNem1.NW_012019910v1 5928848 1043 + 9440265 I e rheMac8.chr3 152675946 1043 - 185818997 I a score=103108.000000 s hg38.chr21_GL383578v2_alt 49973 13 + 63917 AAAGCACCATCCT s panTro5.chr21 887473 13 + 33445071 AAAGCACCATCCT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572108 13 + 46275980 AAAGCACCATCCT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484239 13 - 13858734 AAAGCACCATCCT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606428 13 + 32716333 AAAGCACTATCCT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152676989 13 - 185818997 AAAGCACCATCCT i rheMac8.chr3 I 1043 C 0 s macFas5.chr3 159485064 13 - 192294377 AAAGCACCATCCT i macFas5.chr3 I 2 C 0 s macNem1.NW_012019910v1 5929891 13 + 9440265 AAAGCACCATCCT i macNem1.NW_012019910v1 I 1043 C 0 s cerAty1.NW_012002954v1 5674176 13 + 21915920 AAAGCACCATCCT i cerAty1.NW_012002954v1 I 2438 C 0 s manLeu1.NW_012107264v1 650419 13 + 1337817 AAAGCACCAtcct i manLeu1.NW_012107264v1 C 0 T 2435 s colAng1.NW_012116933v1 622186 13 - 3237654 AAAGCACCATCCT i colAng1.NW_012116933v1 I 2343 C 0 s otoGar3.GL873528 18343035 13 - 38779656 AAAGCACCATCCT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454006 13 + 39895921 AAAACATCATCCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657003 13 - 6883506 AAAACATTATCCT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C a score=125897.000000 s hg38.chr21_GL383578v2_alt 49986 23 + 63917 GCAGTTTACACTTAAGTTCAACT s panTro5.chr21 887486 23 + 33445071 GCAGTTTACACTTAAGTTCAACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572121 23 + 46275980 GCAGTTTACACTTAAGTTCAACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484252 23 - 13858734 GCAGTTTACACTTAAGTTCAACT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606441 23 + 32716333 GCAGTTTACACTGAAGTTCAACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677002 23 - 185818997 GCAGTTTACAGTTAAGTTCAACT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485077 23 - 192294377 GCAGTTTACAGTTAAGTTCAACT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5929904 23 + 9440265 GCAGTTTACAGTTAAGTTCAACT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674189 23 + 21915920 GCAGTTTACAGTTAAGTTCAACT i cerAty1.NW_012002954v1 C 0 C 0 s colAng1.NW_012116933v1 622199 23 - 3237654 GCAGTTTACAGTTAAGTTCAACT i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18343048 23 - 38779656 CTGGTGTAAATTAAAGTTCAACT i otoGar3.GL873528 C 0 I 118 s canFam3.chr31 11454019 23 + 39895921 TCAGTTTACATTTAAGTTCAAGT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657016 23 - 6883506 CTGGTGTGCATTTAAGTTCGAGT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e manLeu1.NW_012107264v1 650432 2435 + 1337817 T a score=527699.000000 s hg38.chr21_GL383578v2_alt 50009 114 + 63917 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGGAGAATACATGTTCTAACTTGGGATGAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---AAGAAGTGGGAGGTAAAAATGAGAAAG---CAAG s panTro5.chr21 887509 114 + 33445071 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGGAGAATACATGTTCTAACTTGGGATGAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---AAGAAGTGGGAGGTAAAAATGAGAAAG---CAAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572144 114 + 46275980 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGGAGAATACATGTTCTAACTTGGGATGAG--ATTGGGAATGTTCAAGAGAT-----------------------------------------------GG---AAGAAGTGGGAGGTAAAAATGAGAAAG---CAAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484275 114 - 13858734 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGGAGAATACATGTTCTAACTTGGGATGAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---AAGAAGAGGGAGGTAAAAATGAGAAAG---CAAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606464 114 + 32716333 ATCTGATAGGAGGCATATAATAGGAAGAGCATGGAGAATACATGTTCTAATTTGGGATGAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---AAGAATTGGGAGGTAAAAATGAGAAAG---CAAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677025 108 - 185818997 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGAAGAATACATGTTCTAACTTGGGACTAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---ACGAAGTAGGAGG------TGAGAAAG---CAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485100 108 - 192294377 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGAAGAATACATGTTCTAACTTGGGACTAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---ACGAAGTAGGAGG------TGAGAAAG---CAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5929927 108 + 9440265 ACCTGATAGGAGGTATATAGTAGGAAGAGCATGAAGAATACATGTTCTAACTTGGGACTAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---ACGAAGTAGGAGG------TGAGAAAG---CAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674212 108 + 21915920 ACCTGATAGGAGGTATATAGTACGAAGAGCATGAAGAATACATGTTCTAACTTGGGACTAG--ATTGGGAATGTTCAGGAGAT-----------------------------------------------GG---ACGAAGTAGGAGG------TGAGAAAG---CAAG i cerAty1.NW_012002954v1 C 0 C 0 s colAng1.NW_012116933v1 622222 108 - 3237654 ACCTCACAGGAGGTATATAGTAGGAAGAGCATGAAGAATACATGTTCTAACTTGGGACGAG--ATTGGGAATGTTCAGGAGAC-----------------------------------------------GG---ACGAAGTGGGAGG------TGAGAAAG---CAAG i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18343189 162 - 38779656 ACCTGATAAGGGGTG-GGAGGAGGGAGAACAAAGGGAACACATGCCCTAACTTGAGATGGGGAAGgggggagggggaagagaggaggggggagaagggagggggaaagggggaggggagagggagggagagg---gggaaggggaaggTAAAGATGAGGATT---CAAG i otoGar3.GL873528 I 118 C 0 s canFam3.chr31 11454042 113 + 39895921 ACCTGATGGGAGGTG-GTGATAGCGAGAGCATAGAGGATACATGTCCTAATTTGGGATGAA--GTTGGGAACACTTAGGAGGT-----------------------------------------------AGGATGAGAGAAGGCAGGTAGAAATGAGGAAG---G--- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657039 116 - 6883506 ACCTGATAGGAGATG-ATAGTATGGACAGCAAAGAGAATATAGGTCCTAATTTGGGATTAC--GTTGGGAATGTTTAGGGTTA-----------------------------------------------GG---GAAAGAGAGAATGGAGAAATGAGAAGGAGACAAG i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e chlSab2.chr2 12311024 0 - 90373283 C e manLeu1.NW_012107264v1 650432 2435 + 1337817 T a score=25416.000000 s hg38.chr21_GL383578v2_alt 50123 4 + 63917 GAGG s panTro5.chr21 887623 4 + 33445071 GAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572258 4 + 46275980 GAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484389 4 - 13858734 GAGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1606578 4 + 32716333 GAGG i nomLeu3.chr25 C 0 I 6150 s rheMac8.chr3 152677133 4 - 185818997 GAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485208 4 - 192294377 GAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930035 4 + 9440265 GAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674320 4 + 21915920 GAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311024 4 - 90373283 gagG i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 622330 4 - 3237654 GAGG i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18343351 4 - 38779656 AAGG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454155 4 + 39895921 GAGA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657155 3 - 6883506 GAG- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e manLeu1.NW_012107264v1 650432 2435 + 1337817 T a score=158645.000000 s hg38.chr21_GL383578v2_alt 50127 28 + 63917 CCAAA-TG-TACTTTTAAAAGCCAGAGGGT s panTro5.chr21 887627 28 + 33445071 CCAAA-TG-TACTTTTAAAAGCCAGAGGAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572262 28 + 46275980 CCAAA-TG-TACTTTTAAAAGCCAGAGGAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484393 28 - 13858734 CCAAA-TG-TACTTTTAAAAGCCAGAGGAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1612732 28 + 32716333 ccAAA-TG-TACTTTTAAAAGCCAGAGGAT i nomLeu3.chr25 I 6150 C 0 s rheMac8.chr3 152677137 28 - 185818997 CCAAA-TG-TACTTGTAAAAGCCAGAGGAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485212 28 - 192294377 CCAAA-TG-TACTTGTAAAAGCCAGAGGAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930039 28 + 9440265 CCAAA-TG-TACTTGTAAAAGCCAGAGGAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674324 28 + 21915920 CCAAA-TG-TACTTGTAAAAGCCAGAGGAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311028 28 - 90373283 CCAAA-TG-TACTTGTAAAAGCCAGAGGAT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 622334 28 - 3237654 CCAAA-TG-TACTTGTAAAAGCCAGAGGAT i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18343355 27 - 38779656 CCAAACTA-TACTTTTAAAATT--GAGAAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454159 29 + 39895921 CCACA-GGATACTTTAAAAGACCTGAAGTT i canFam3.chr31 C 0 I 20 s dasNov3.JH568778 657158 28 - 6883506 TGAAA-TG-ATGCTTTAAAGAACTGAGGTT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I e manLeu1.NW_012107264v1 650432 2435 + 1337817 T a score=611628.000000 s hg38.chr21_GL383578v2_alt 50155 88 + 63917 TGTGCTCATTCAAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTCTTTCAAGT-TCCTTGTAAC s panTro5.chr21 887655 88 + 33445071 TGTGCTCATACAAACAACCGGG------CAAT------CT-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTCTTTCAAGT-TCCTTGTAAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572290 88 + 46275980 TGTGCTCATACAAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTCTTTCAAGT-TCCTTGTAAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484421 88 - 13858734 TGTGCTCATACAAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTCTTTCAAGT-TCCTTGTAAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1612760 88 + 32716333 TGTGCTCATACAAACAACTGGG------CAAT------CC-TCCA------TTAACA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTAAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677165 88 - 185818997 TGTGCTCATATGAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTCAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485240 88 - 192294377 TGTGCTCATATGAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTCAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930067 88 + 9440265 TGTGCTCATATGAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTCAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674352 88 + 21915920 TGTGCTCATACGAACAACCGGG------CAAT------CC-TCCA------TTACCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTCAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311056 85 - 90373283 TGTGCTCATACG---AACCGGG------CAAT------CC-TCCA------TTATCA-----ACAATGCAAGACCTATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTAAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 647997 88 + 1337817 TGTGCTCATACGAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAAT-TCCTTGTCAC i manLeu1.NW_012107264v1 T 2435 C 0 s colAng1.NW_012116933v1 622362 88 - 3237654 TGTGCTCACAGGAACAACCGGG------CAAT------CC-TCCA------TTATCA-----AGAATGCAAGACCCATTGTCCTTTTCTTTCTATTTCAAGT-TCCTTGTAAC i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18343382 88 - 38779656 TATCCTCACACAAA-----AGG------CAATCCCCGCCC-CCCA------TTATCA-----AGAAGGCAAAATCC-TTGTTCTTTTCTTTCAATTCCATGT-TTCTTGCTAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454208 105 + 39895921 TATACTCATGCAAATAAACTAGAGTCTACACT------CA-TACAAAAAACTCATAAATGTCAGAAGGCAAGGCCCATTGTCCTTTTCTTTTTGTTCCGAGT-TCCTCTTTTC i canFam3.chr31 I 20 C 0 s dasNov3.JH568778 657186 81 - 6883506 TATGCTCA-------AAGTAGG------CAAT------CCATCTA------GTATCA-----AGAAGTCAAGG--TGTTGTCCTTTCCTTTCTGTTCCAAGTGTCCTCTTTAC i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856245 320 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I a score=1137344.000000 s hg38.chr21_GL383578v2_alt 50243 140 + 63917 TTAAGCTCCAAATTTTTTCTTCGTATCTTAATTTCCTCTTTAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTCTGGCTG-TATTTGCTATACACTCTTGAGAGATTTCTGAATTT s panTro5.chr21 887743 140 + 33445071 TTAAGCTCCAGATTTTTTCTTCGTATCTTAATTTCCTCTTTAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTCTGGCTG-TATTTGCTATACACTCTTGAGAGATTTCTGAATTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572378 138 + 46275980 TTAAGCTCCAAATTTTTTCTTCGTATCTTAATTTCCTCTTTAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTCTGGCTG-TATTTGCTATACACTC--GAGAGATTTCTGAATTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484509 140 - 13858734 TTAAGCTCCAAATTTTTTCTTCGTATCTTAATTTCCTCTTTAAGTTTTTCCTTGATTCTCTTCGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTCTGGCTG-TATTTGCTATACACTCTTGAGAGATTTCTGAATTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1612848 140 + 32716333 TTAAGCTCCAAATTTTTTGTTCGTATCTTAATTTCCTCTATAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTAATCTGGCTG-TATTTGCTATACACTCTTGAGAGATTACTGAATTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677253 140 - 185818997 TTAAGCTCCAAATTTGCTCTTCATATCTTAATTTCCTCTTCAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTTTGGCTG-TATTTGCTATACGCTCTTGAGAGATTTCTGAATTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485328 140 - 192294377 TTAAGCTCCAAATTTGCTCTTCATATCTTAATTTCCTCTTCAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATCTCCTTGCTTTGGCTG-TATTTGCTATACGCTCTTGAGAGATTTCTGAATTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930155 140 + 9440265 TTAAACTCCAAATTTGCTCTTCATATCTTAGTTTCCTCTTCAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTTTGGCTG-TATTTGCTATACGCTCTTGAGAGATTTCTGAATTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674440 140 + 21915920 TTAAGCTCCAAATTTGCTCTTCATATCTTAATTTCCTCTTCAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTTTGGCTG-TATTTGCTATACACTCTTGAGAGATTTCTGAATTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311141 140 - 90373283 TTAAGCTCCAAATTTGTTCTTCATATCTTAATTTCCTCTTCAAGTTTTCCCTTGATTCTCTTAGTCCATTGTTTTCA--TGTGAATGA-TATGTACTTGCTTTGGCTG-TATTTGCTATACACTCTTGAGAGATTTCTGAATTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 648085 140 + 1337817 TTAAGCTCCAAATTTGCTCTTCATATC-TAATTTGCTCTTCAAGTTTTTCCTTGATTCTCTTAGTCCATTGTCTTCA--TGTGAATGA-TATGTACTTGCTTTGGCTGTTATTTGCTATACACTCTGGAGAGATTTCTGAATTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 622450 140 - 3237654 TTAAGCTCCAAATTTGTTCTTCATATCTTAATTTCCTCTTCAAGTTTTTCCTTGATTCTCTTAGTTCATTGTCTTCA--TGTGAATGA-TATGTCCTTGCTTTGGCTG-TATTTACTATACACTCTTGAGAGATTTCTGAATTT i colAng1.NW_012116933v1 C 0 C 0 s micMur3.chr31 16856565 140 + 47401472 TTAAGCTCCAAATTGTTCTTTTGTGTTTTAATTTCCCCTTTGAGGTTTTCCTTCATCCTCCTAGTCCTTTATCTTCA--TGTGAATGA-TATGTCCTTGCTCTGGCTG-TATTTGCTGCACACTCTTGATGAATTTCTGAATTT i micMur3.chr31 I 320 I 71 s otoGar3.GL873528 18343470 122 - 38779656 TGAAGCACTAAATTGTT-------------------CCTTTACGGTTTTTCTGATTCTCCTCAGTCTGTTATCTTCG--TGTGCAGGATTACATCCTTGCTCTGGCTG-TATTTGCTCCACACTCTTGCAACATTTCTGAATTT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454313 136 + 39895921 TCAAGCTCCAGATTGTTCCTTTGTTTCTTATTTTCCCCTTTAAGATTTTCCTTGATTCTCGAAATCTGTTATCTGCA--TGTACATGT-TATGTCCCTGCTCAAGCTA-GATTTGCTCCAGACTCTTGAGAGATACCTGA---- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657267 137 - 6883506 TCAGTGTGTGGATTGTTCCTTTGTGTCTTATTTTCCCCTTTAAG-TTTTCCTTGAT---CTGAGTACA-TACTTTCATGTGTGGATGA-TATGTCCCCGCTTTGGCTG-GATTTGTTGCAGATTCTTGAGAGATTTCTAAATTT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I a score=526508.000000 s hg38.chr21_GL383578v2_alt 50383 104 + 63917 ATCCTCCATTTCTAACCTTGGAAATCTACAAAGAGAGGCTTAAATACAACTAAGCCATGCCATATAATGACCAaaacaaacaaacaaaca------------aacaaacaaacaaa s panTro5.chr21 887883 104 + 33445071 ATCCTCCATTTCTAACCTTGGAAATCTACAAAGAGAGGCTTAAATACAACTAAGCCATGCCATATAATGACCAaaacaaacaaacaaaca------------aacaaacaaacaaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572516 100 + 46275980 ATCCTCCATTTCTAACCTTGGAAATCTACAAAGAGAGGCTTAAATACAACTAAGCCATGCCATATAATGACCA----aaacaaacaaaca------------aacaaacaaacaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484649 100 - 13858734 ATCCTCCATTTCTAACCTTGGAAATCTACAAAAAGAGGCTTAAATACAACTAAGCCATGCCATATAATGACCA----aaacaaacaaaca------------aactaacaaacaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1612988 88 + 32716333 ATCCTCCATTTCCAACCTTGGAAATCTACAAAGAGAGGCTTAAAGACAACTAAGCTATGCCACGTAATGACCA----------------A------------AAGAAACAAACAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677393 92 - 185818997 ATCCTCCATTTCTAACCTTGGAAAAGTACAAACAGAGGCTTAAAGACAACTAAGCCATGCCATATAATGACCA------------ACACA------------AACAAACAAACAAA i rheMac8.chr3 C 0 I 6 s macFas5.chr3 159485468 92 - 192294377 ATCCTCCATTTCTAACCTTGGAAGAGTACAAACAGAGGCTTAAAGACAACTAAGCCATGCCATATAATGACCA------------ACACA------------AACAAACAAACAAA i macFas5.chr3 C 0 I 6 s macNem1.NW_012019910v1 5930295 92 + 9440265 ATCCTCCATTTCTAACCTTGGAAAAGTACAAACAGAGGCTTAAAGACAACTAAGCCATGCCATATAATGACCA------------ACACA------------AACAAACAAACAAA i macNem1.NW_012019910v1 C 0 I 6 s cerAty1.NW_012002954v1 5674580 92 + 21915920 ATCCTCCATTTCTAACCTTGGAAAAGTACAAACAGAGGCTTAAAGACAACTAAGCCATGCCATATAATGACCA------------AAACA------------AACAAACAAACAAA i cerAty1.NW_012002954v1 C 0 I 6 s chlSab2.chr2 12311281 92 - 90373283 ATCCTCCATTTCTAACCTTGGAAAAGTACAAACAGAGGCTTAAAGACAACTAAGCCATGCCGTATAATGACCA------------AAACA------------AACAAACAAACAAA i chlSab2.chr2 C 0 I 6 s manLeu1.NW_012107264v1 648225 92 + 1337817 ATCCTCTATTTCTAACCTTGGAAAAGTACAAACAGAGGCTTAAAGACAACTAAGCCGTGCCATATAATGACCA------------ACACA------------AACAAACAAACAAA i manLeu1.NW_012107264v1 C 0 I 6 s colAng1.NW_012116933v1 622590 92 - 3237654 ATCCTCCATTTCTAACCTTGGAAAAGTACAAACAGAGGCTTAAAGACAACTAAGCCATGCCATATAATGaaca------------aaaca------------aacaaacaaacaaa i colAng1.NW_012116933v1 C 0 I 6 s otoGar3.GL873528 18343592 53 - 38779656 ------CAGCTCCAG------------------AGAGGTC---------ATAAACTATGACCTGAGATGATCA------------CAACC------------AAGAGATA------ i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454449 78 + 39895921 -------ATTTCTGAACTAGGAAATTTTAAGATAGAGGTTTAAAGACAACTAGGCAATGGCTTAATATAATTA------------AAACA------------AAGAGGT------- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657404 103 - 6883506 AACATCTATTTCTGG-CTTGGAAATCTTCAAAAAGGAATGTGAAGACAAGTAGGCTGTGGTTTAAGATGATCA------------AAACATAACGATGGGTGATTAGGCAATAAAA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856705 71 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I a score=271574.000000 s hg38.chr21_GL383578v2_alt 50487 34 + 63917 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- s panTro5.chr21 887987 30 + 33445071 GCATGGCTAGGCACTGGTTTGTTTT----ATGTT-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572616 34 + 46275980 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484749 34 - 13858734 GCATGGCTAGGAACTGGTTTGTTTTGTTTATGTT-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613076 34 + 32716333 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677491 34 - 185818997 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i rheMac8.chr3 I 6 C 0 s macFas5.chr3 159485566 34 - 192294377 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i macFas5.chr3 I 6 C 0 s macNem1.NW_012019910v1 5930393 34 + 9440265 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i macNem1.NW_012019910v1 I 6 C 0 s cerAty1.NW_012002954v1 5674678 34 + 21915920 GCATGGCTAGGCACTGATTTGTTTTGTTTATGTT-- i cerAty1.NW_012002954v1 I 6 C 0 s chlSab2.chr2 12311379 34 - 90373283 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i chlSab2.chr2 I 6 C 0 s manLeu1.NW_012107264v1 648323 34 + 1337817 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i manLeu1.NW_012107264v1 I 6 C 0 s colAng1.NW_012116933v1 622688 34 - 3237654 GCATGGCTAGGCACTGGTTTGTTTTGTTTATGTT-- i colAng1.NW_012116933v1 I 6 C 0 s micMur3.chr31 16856776 34 + 47401472 GCATGGTTAGGCATTGGTTTGCTTTGTTTATGTT-- i micMur3.chr31 I 71 I 19 s otoGar3.GL873528 18343645 33 - 38779656 -CATGGTTAGGCACTGGTCTGCCTGGTTTACACT-- i otoGar3.GL873528 C 0 I 8 s canFam3.chr31 11454527 34 + 39895921 GTGTGGTGAGGCACTCTTTTGCTTTGTTGCTCTT-- i canFam3.chr31 C 0 I 10 s dasNov3.JH568778 657507 28 - 6883506 --------GGTTTTTGATTGTTTTTCTTTGTATTGT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I a score=20856.000000 s hg38.chr21_GL383578v2_alt 50521 4 + 63917 TCCA s panTro5.chr21 888017 4 + 33445071 TCCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572650 4 + 46275980 TCCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484783 4 - 13858734 TCCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613110 4 + 32716333 TCCA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677525 4 - 185818997 TCCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485600 4 - 192294377 TCCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930427 4 + 9440265 TCCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674712 4 + 21915920 TCCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311413 4 - 90373283 TCCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 648357 4 + 1337817 TCCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 622722 4 - 3237654 TCCA i colAng1.NW_012116933v1 C 0 C 0 s otoGar3.GL873528 18343686 2 - 38779656 -CC- i otoGar3.GL873528 I 8 C 0 s canFam3.chr31 11454571 2 + 39895921 TC-- i canFam3.chr31 I 10 C 0 s dasNov3.JH568778 657535 4 - 6883506 TCTA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856810 19 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I e saiBol1.JH378168 2500481 11 + 13128814 I e calJac3.chr21 19151845 53 + 50472720 I a score=28878.000000 s hg38.chr21_GL383578v2_alt 50525 5 + 63917 ---AACAA s panTro5.chr21 888021 5 + 33445071 ---AACAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572654 5 + 46275980 ---AACAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484787 5 - 13858734 ---AACAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613114 5 + 32716333 ---AACAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677529 5 - 185818997 ---AACAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485604 5 - 192294377 ---AACAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930431 5 + 9440265 ---AACAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674716 5 + 21915920 ---AACAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311417 5 - 90373283 ---AACAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 648361 5 + 1337817 ---AACAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 622726 5 - 3237654 ---AACAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19151898 5 + 50472720 ---AACAA i calJac3.chr21 I 53 C 0 s saiBol1.JH378168 2500492 5 + 13128814 ---AACAT i saiBol1.JH378168 I 11 C 0 s otoGar3.GL873528 18343688 3 - 38779656 -----TCA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11454573 5 + 39895921 ---ATCAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657539 7 - 6883506 TCCATCA- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75833481 885 + 98207768 I e micMur3.chr31 16856810 19 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I a score=33794.000000 s hg38.chr21_GL383578v2_alt 50530 6 + 63917 TTTTAG- s panTro5.chr21 888026 6 + 33445071 TTTTAG- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572659 6 + 46275980 TTTTAG- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484792 6 - 13858734 TTTTAG- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613119 6 + 32716333 TTTTAG- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677534 6 - 185818997 TTTCAG- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159485609 6 - 192294377 TTTCAG- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930436 6 + 9440265 TTTCAG- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5674721 6 + 21915920 TTTTAG- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311422 6 - 90373283 TTTCAG- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 648366 6 + 1337817 TTTTAG- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 622731 6 - 3237654 TTTTAG- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19151903 6 + 50472720 TCTAAA- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500497 6 + 13128814 TCTAAA- i saiBol1.JH378168 C 0 C 0 s otoGar3.GL873528 18343691 6 - 38779656 TTTAAA- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75834366 5 + 98207768 -TCTAA- i mm10.chr16 I 885 I 1 s canFam3.chr31 11454578 2 + 39895921 ----AA- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657546 6 - 6883506 -TCCAAA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16856810 19 + 47401472 I e aotNan1.NW_018487195v1 6085658 72 + 9889416 I e cebCap1.NW_016107322v1 7038001 64 - 14377064 I a score=1319292.000000 s hg38.chr21_GL383578v2_alt 50536 97 + 63917 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-ATGAACCAACAATTTTAC-AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAATGGAAAT s panTro5.chr21 888032 97 + 33445071 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-ATGAACCAACAGTTTTAC-AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAATGGAAAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572665 98 + 46275980 ATTGTTTGGAAATTATGGTCTTA----------TAAAAGGAAA-ATGAACCAACAGTTTTACAAGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAATGGAAAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484798 89 - 13858734 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-ATGAACCAAC---------AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAATGGAAAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613125 97 + 32716333 ATTGTTTGGAAGTTATGGTCTTA----------TAAAAGGAAA-ATGAACCAACAGTTTTAT-AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAATGGACAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677540 97 - 185818997 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGACCAACAGTTTTAC-AGTGCTTTCTAGAATATGTAAACATGAATGACTTCTCAGTGGAAAT i rheMac8.chr3 C 0 I 5 s macFas5.chr3 159485615 97 - 192294377 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGACCAACAGTTTTAC-AGTGCTTTCTAGAATATGTAAACATGAATGACTTCTCAGTGGAAAT i macFas5.chr3 C 0 I 5 s macNem1.NW_012019910v1 5930442 97 + 9440265 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGACCAACAGTTTTAC-AGTGCTTTCTAGAATATGTAAACATGAATGACTTCTCAGTGGAAAT i macNem1.NW_012019910v1 C 0 I 5 s cerAty1.NW_012002954v1 5674727 97 + 21915920 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGAGCAACAGTTTTAC-AGTGCTTTCTAGAATATGTAAACATGAATGACTTCTCAGTGGAAAT i cerAty1.NW_012002954v1 C 0 I 5 s chlSab2.chr2 12311428 97 - 90373283 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGACCAACAGTTTTAC-AGTGCTTTCTAGAATTTGTAAATATGAATGACTTCTCAGTGGCAGT i chlSab2.chr2 C 0 I 5 s manLeu1.NW_012107264v1 648372 97 + 1337817 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGACCAACAGTTTTAC-AGTGCTTTCTAGAATTTGTAAACATGAATGACTTCTCAGTGGAAAT i manLeu1.NW_012107264v1 C 0 I 5 s colAng1.NW_012116933v1 622737 97 - 3237654 ATTGTTTGGAAATTATGGTTTTA----------TAAAAGGAAA-GTGGACCAACAGTTTTAC-AGTGCTTTCTAGAATTTGTAAACATGAATGACTTCTCAGTGGAAAT i colAng1.NW_012116933v1 C 0 I 5 s calJac3.chr21 19151909 97 + 50472720 ATTGTTTAGAAATTATGGTTTTA----------TGAAAGGAAA-GTGAACCAACAGTTTTGT-AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAACAGAAAT i calJac3.chr21 C 0 I 6 s saiBol1.JH378168 2500503 97 + 13128814 ATTGTTTAGAAATTATGGTTTTA----------TGAAAGAAAA-GTGAATCTACAGTTTTAT-AGTGCTTTCTAGAATTTATAAACATGAAAGACTTCTCAACGGAAAT i saiBol1.JH378168 C 0 I 6 s cebCap1.NW_016107322v1 7038065 97 - 14377064 ATTGTTTAGAAACTATGGTTTTA----------TGAAAGGAAA-GCGAATCAAGAGTTTTAT-AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTTTCAACGGAAAT i cebCap1.NW_016107322v1 I 64 I 6 s aotNan1.NW_018487195v1 6085730 97 + 9889416 ATTGTTTAGAAATTACGGTTTTA----------TGAAAGGAAA-GTGAACCAACAGATTTAT-AGTGCTTTCTAGAATTTGTAAACATGAAAGACTTCTCAACGGAACT i aotNan1.NW_018487195v1 I 72 I 6 s micMur3.chr31 16856829 98 + 47401472 ATTGTTTGGGAATTGTGGTTTTA----------TAAAAAGAAAAATGAATGAGCAGTTTCAT-AATGATGTCTAAATTTTGTAAACATGAAAGACTTCTCAATGGAAAT i micMur3.chr31 I 19 I 13 s otoGar3.GL873528 18343697 97 - 38779656 ATCGTTAAATTGTCATGGTTTCA----------TAAAAAGAAACATGAATGAACTGTTTTAT-AATGCTTTCCACATTTTTTGAACATAAAAGACTTAG-AATGGAAAT i otoGar3.GL873528 C 0 I 6 s mm10.chr16 75834372 106 + 98207768 ATTTTCTGGCATTTATTGTTTCACGTTGTGTGTTAGAGCTTGA-ATAAAATAACA-TTTTAC-ACTGTTTTATATGTTTTGTAAACACAAAACACTTCTTAATGGAAAT i mm10.chr16 I 1 I 9 s canFam3.chr31 11454580 82 + 39895921 ATTATTTGGAAATCATGGTTTTA----------TAAAAGAAAA------------GTTTTAT-GATGCTTTCTAAATTTTGTGAAGAT----GACTTTTCAATGAAAAT i canFam3.chr31 C 0 I 5 s dasNov3.JH568778 657552 97 - 6883506 CTTGTTTGAGAATTGAGGTTTTA----------GAAAAGAAAA-ATGAACTGACAGTTTTAT-AATACTTGCAAAATTTTAGAAATATGAAAGAATTCTCAATGGAAAT i dasNov3.JH568778 C 0 I 6 a score=83332.000000 s hg38.chr21_GL383578v2_alt 50633 6 + 63917 CAGTTT s panTro5.chr21 888129 6 + 33445071 CAGTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572763 6 + 46275980 CAGTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484887 6 - 13858734 CAGTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613222 6 + 32716333 CAGTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677642 6 - 185818997 TAGTTT i rheMac8.chr3 I 5 C 0 s macFas5.chr3 159485717 6 - 192294377 TAGTTT i macFas5.chr3 I 5 C 0 s macNem1.NW_012019910v1 5930544 6 + 9440265 TAGTTT i macNem1.NW_012019910v1 I 5 C 0 s cerAty1.NW_012002954v1 5674829 6 + 21915920 TAGTTT i cerAty1.NW_012002954v1 I 5 C 0 s chlSab2.chr2 12311530 6 - 90373283 CAGTTT i chlSab2.chr2 I 5 C 0 s manLeu1.NW_012107264v1 648474 6 + 1337817 CAGTTT i manLeu1.NW_012107264v1 I 5 C 0 s colAng1.NW_012116933v1 622839 6 - 3237654 CAGTTT i colAng1.NW_012116933v1 I 5 C 0 s calJac3.chr21 19152012 6 + 50472720 CAGTTT i calJac3.chr21 I 6 C 0 s saiBol1.JH378168 2500606 6 + 13128814 CAGTTT i saiBol1.JH378168 I 6 C 0 s cebCap1.NW_016107322v1 7038168 6 - 14377064 CAGTTT i cebCap1.NW_016107322v1 I 6 C 0 s aotNan1.NW_018487195v1 6085833 6 + 9889416 CAGTTT i aotNan1.NW_018487195v1 I 6 C 0 s otoGar3.GL873528 18343800 6 - 38779656 CAGTTT i otoGar3.GL873528 I 6 C 0 s canFam3.chr31 11454667 6 + 39895921 CTGTTT i canFam3.chr31 I 5 C 0 s dasNov3.JH568778 657655 6 - 6883506 TAGTTT i dasNov3.JH568778 I 6 C 0 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I a score=1186146.000000 s hg38.chr21_GL383578v2_alt 50639 126 + 63917 ATAACtgtaactgcccaacgggttcaccttgcccacggcctagagagagcccatttatcaagacaggggacttgcaattgagaaagagtaattcacgcagaggcggctgtgtgggagactggagtt s panTro5.chr21 888135 126 + 33445071 GTAACtgtaactgcccaacgggttcaccttgcccacggcctagagagagcccatttatcaagacaggggacttgcaatggagaaagagtaattcacgcagaggcggctgtgtgggagactggagtt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572769 126 + 46275980 ATAACtgtaactgcccaacgggttcaccttgcccacggcctagagagagcccatttatcaagacaggggacttgcaatggagaaagagtaattcacgcagaggcggctgtgtgggagactggagtt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 484893 125 - 13858734 ATAACtgtaactacccaacgggttcaccttgcccactgcctagacagag-ccatttatcaagacaggggacttgcaatggagaaagagtaattcacacagaggcggctgtgtgggagactggagtt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613228 126 + 32716333 ATAACtataaatgcccaatgggttcaccttgcccaccacctagagagagcccatttatcaagacagggggcttgcaatggagaaagagtaattaatgcagaggcagctgtgtgggagactggagtt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677648 126 - 185818997 ATAACtgtaactgcccaatgggttcaccttgcccactgcctagagagagcccgtttatcaagacagggaaccttcaatggagaaagaggaattcacgcagaggcggctgtgtgggaggctggagtt i rheMac8.chr3 C 0 I 190 s macFas5.chr3 159485723 126 - 192294377 ATAACtgtaactgcccaatgagttcaccttgcccactgcctagagagagcccgtttatcaagacagggaaccttcaatggagaaagaggaattcacgcagaggcggctgtgtgggaggctggagTt i macFas5.chr3 C 0 I 190 s macNem1.NW_012019910v1 5930550 126 + 9440265 ATAACtgtaactgcccaatgggttcaccttgcccactgcctagagagagcccgtttatcaagacagggaaccttcaatggagaaagaggaattcacgcagaggcggctgtgtgggaggctggagtt i macNem1.NW_012019910v1 C 0 I 186 s cerAty1.NW_012002954v1 5674835 126 + 21915920 ATAACtgtaactgcccaatgggttcaccttgcccaccgcctagagagagcccgtttatcaagacagggaaccttcaatggagaaagaggaattcacgcagaggcggctgtgtgggaggctggagat i cerAty1.NW_012002954v1 C 0 I 174 s chlSab2.chr2 12311536 125 - 90373283 ATAACtgtaactgcccgatgggttcagctc-cgcaccgcctagagagagctcgtttatcaagacagggaacttgcaatggagaaagaggaattcacgcagaggcggctgtgtgggagcctggagtt i chlSab2.chr2 C 0 I 195 s manLeu1.NW_012107264v1 648480 126 + 1337817 ATAACtgtaactgccggacaggctcaccttgccctccgcctagagagagcccatttatcaagacagggaacttgcaatggagaaagaggaattcacgcagaggaggctgtgtgggaggctggagtt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 622845 126 - 3237654 ATAACtgtaactgcccaatgggttcaccttgcccactgcctagagagagcccatttatcaagacagagaacttacagtggagaaagaggaattcatgcagagacggctgtgtgggaggctggagtt i colAng1.NW_012116933v1 C 0 I 192 s calJac3.chr21 19152018 126 + 50472720 ATAACtgtaaccgcccaagaggttcaccttgcccaccacctagacagagcatatttattaagacagggcacttgcaatgaagaaaaagtaattcatacagaggcagctgtgtgggagactggagtt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500612 126 + 13128814 ATAACtgtaaccgcccgacaggttcaccttgcccaccacctagacagagcacatttaccaagacagggcacttgcaattaagaaaaagtaattcacacagaggcagctgtgtgggagacgggagtt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038174 126 - 14377064 ATAACtgtaaccacccaacaggttcaccttgcccagcacccagacagagcacatttatcaaaacagggcacttgcaattaagaaaaagtaattcacacagaggcagctgtgtaggagactggagct i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085839 126 + 9889416 ATAACtgtaaccgcccaacaggttcaccttgcccaccacctagacagagcacatttatcaagacagggcacttgcaatgaagaaaaagtaattcacacagaagcagctgtgtgggagactggagtt i aotNan1.NW_018487195v1 C 0 C 0 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C a score=54600.000000 s hg38.chr21_GL383578v2_alt 50765 5 + 63917 ttatt s panTro5.chr21 888261 5 + 33445071 ttatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572895 5 + 46275980 ttatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485018 5 - 13858734 ttatt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613354 5 + 32716333 ttatt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677964 5 - 185818997 ttatt i rheMac8.chr3 I 190 C 0 s macFas5.chr3 159486039 5 - 192294377 ttatt i macFas5.chr3 I 190 C 0 s macNem1.NW_012019910v1 5930862 5 + 9440265 ttatt i macNem1.NW_012019910v1 I 186 C 0 s cerAty1.NW_012002954v1 5675135 5 + 21915920 ttatt i cerAty1.NW_012002954v1 I 174 C 0 s chlSab2.chr2 12311856 5 - 90373283 ttatt i chlSab2.chr2 I 195 C 0 s manLeu1.NW_012107264v1 648606 5 + 1337817 ttatt i manLeu1.NW_012107264v1 C 0 I 6079 s colAng1.NW_012116933v1 623163 5 - 3237654 ttatt i colAng1.NW_012116933v1 I 192 C 0 s calJac3.chr21 19152144 5 + 50472720 ttatt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500738 5 + 13128814 ttatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038300 5 - 14377064 ttatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085965 5 + 9889416 ttatt i aotNan1.NW_018487195v1 C 0 C 0 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C a score=406364.000000 s hg38.chr21_GL383578v2_alt 50770 49 + 63917 attactcaaattggtctccctgaaaagtcggatacggaaggttttaagg s panTro5.chr21 888266 49 + 33445071 attactcaaattggtctccctgaaaagtcggatatggaaggttttaagg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572900 49 + 46275980 attactcaaattggtctccctgaaaagtcggatacggaaggttttaagg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485023 49 - 13858734 attactcaaattggtctccctgaaaagtcggatacggaaggttttaagg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613359 49 + 32716333 attactcaaatcagtctccctgaaaactcagatatggaaggttttaagg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152677969 49 - 185818997 attacccaaatcggtctccctgaaaactcggatacggaaggttttaaga i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486044 49 - 192294377 attacccaaatcggtctccctgaaaactcggatacggaaggttttaaga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930867 49 + 9440265 attacccaaatcggtctccctgaaaactcggatacagaaggttttaaga i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675140 49 + 21915920 attacccaaatcggtctccctgaaaactcggatacggaaggttttaaga i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311861 49 - 90373283 attacccaaatcagtctccctgaaaactcggatacggaaggttttaagg i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623168 48 - 3237654 attactcaaattagtct-cctgaaaactcagatacggaaggttttaagg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19152149 49 + 50472720 attactcaaatccgtctccctgaaaactcagatatcaaaggttttaagg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500743 49 + 13128814 attactcaaatgggtctccctgaaaactcggataccaaaggttttgaag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038305 49 - 14377064 attactcaaatctgtctccctgaaaacttggataccgaaggttttaagg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6085970 49 + 9889416 attactcaaatcggtctccctgaaaactcggataccgaaggttttaggt i aotNan1.NW_018487195v1 C 0 I 8 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=167067.000000 s hg38.chr21_GL383578v2_alt 50819 21 + 63917 ataatttggtgagtaggggct s panTro5.chr21 888315 21 + 33445071 ataatttggtgagtaggggct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572949 21 + 46275980 ataatttggtgagtaggggct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485072 21 - 13858734 ataatttggtgagtaggggct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613408 21 + 32716333 ataatttggtgagtaggggct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678018 21 - 185818997 ataatttggcgagtaggggct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486093 21 - 192294377 ataatttggcgagtaggggct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930916 21 + 9440265 ataatttggcgagtaggggct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675189 21 + 21915920 ataatttggcgagtaggggct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311910 21 - 90373283 ataatttggcgagtaggggct i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623216 21 - 3237654 ataatttggctagtaggggct i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19152198 21 + 50472720 ataatttggtgggtagggact i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2500792 21 + 13128814 ataatttggtgggtaggggct i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038354 21 - 14377064 ataatttggtgggtaggggct i cebCap1.NW_016107322v1 C 0 C 0 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I e aotNan1.NW_018487195v1 6086019 8 + 9889416 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=3704003.000000 s hg38.chr21_GL383578v2_alt 50840 464 + 63917 cgagaagtggggagtgctgattggttggattggagattaaataattgggggtcaaagtgggtt---cttgatggcttctgttcctagatgggatctcagaactggttgagccagattacccttctaggtggtgtctgtcatctgctgcattggagtgcagggtctgcaaaagatctcaagcattaatcttaggctttacaatagtgatgttattcccaggagcaatttggggaggttcagactcttgcagctggaggctgtatgacccctaaaccataatttctaatcttgtagctaatgcgttagtcctacaaaggcagactggtccc-caggcaagaagggg-tcttttcgggaaagggctattat----caaatttgtttcagaatcaaactataaactaaatttctttccaaggttatttaggcctatgcccagaaatgaaaaagg-----acagattaaaagttaacaggaaa s panTro5.chr21 888336 465 + 33445071 cgagaagtggggagtgctgattggttggattggagattaaataattgggggtcaaagtgggtt---cttgatggcttctgttcctagatgggatctcagaactggttgagccagattacccttctaggtggtgtctgtcatctgctgcattggaatgcagggtctgcaaaagatctcaagcattaatcttaggctttacaatagtgatgttattcccaggggcaatttggggaggttcagactcttgcagctggaggctgtatgacccctaaaccataatttctaatcttgtagctaatgcgttagtcctacaaaggcagactggtccc-caggcaagaagggggtcttttcgggaaagggctattat----caaatttgtttcagaatcaaactataaactaaatttctttccaaggttatttaggcctatgcccagaaatgaaaaagg-----acagattaaaggttagcaggaaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14572970 465 + 46275980 cgagaagtggggagtgctgattggttggattggagattaaataattgggggtcaaagtgggtt---cttgatggcttctgttcctaaatgggatctcagaactggttgagccagattacccttctaggtggtgtctgtcatctgctgcattggaatgcagggtctgcaaaagatctcaaacattaatcttaggctttacaatagtgatgttattcccaggagcaatttggggaggttcagactcttgcagctggaggctgtatgacccctaaaccataatttctaatcttgtagctaatgcgttagtcctacaaaggcagactggtccc-caggcaagaagggggtcttttcgggaaagggctattat----caaatttgtttcagaatcaaactataaactaaatttctttctaaggttatttaggcctatgcccagaaatgaataagg-----acagattaaaggttagcaggaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485093 465 - 13858734 cgagaagtggggagtgctgattggttggattggagattaaataattgggggtcaaagtgagtt---cttgatggcttctgttcctagatgggatctcagaactggttgagccagattacccttctaggtggtgtctgtcatctgctgcattggaatgcagggtctgcaaaagatctcaagcattaatcttaggctttacaatagtgatgttattcccaggagcaatttggggaggttcagactcttgcagctggaggctgtatgacccctaaaccataatttctactcttgtagctaatgcgttagtcctacaaaggcagactggtccc-cagacaagaagggggtcttttcgggaaagggctgttat----caaatttgtttcagaatcaaactataaactaaatttctttccaaggttatttaggcctatgcccagaaatgaaaaagg-----acagattaaaggttagcaggaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613429 465 + 32716333 ctggaagtggggagtgctgattggttgggttggagattaaataattgggcgtcaaagtgagtt---cttgatggcttctgttcctagatgggatctcagacctggttgagccagattatccttctaggtggtgtctgtcatctgctgcattggaatgcagggtctgcaaaagatctcaagcattgatcttaggctttacaatagtgatgttattcccaggagcaatttggggaagttcagactcttgtagctggaggctgcatgacccctaaaccataatttctaatcttgtagctaatgtgttagtcctacaaaggcagactggtccc-caggcaaaaagggggtcttttcgggaaagggctattat----caattttgtttcagagtcaaaccataaactaaatttctttccaaagttatttaggcctatgcccagaaatgaacaagg-----acagcttaaaggttagaaggaaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678039 449 - 185818997 cggaaagtggggagtgctgattggttgggttggagattaaataattgggggtcaaagtgaatt---cttggtgacttctgttcctagatgggatctcagaactggttgacccagattacccttctgggtagtgtctgtcatctgctgcattggaatgcagggtctgcagaagatctcaagcattgatcttaggctttacaatattgatgttattcccaggagcaatttgaggaggttcagactcttgcag----------------ccctaaagcataatttctaatcttggagctaatgtgttagtcctacaaaggcagactggtccc-caggcaagaaggaggtcttttggggaaagggctgttat----caattttgtttcacagtcaaactatatattaaattcctttccaaggttatttaggcctatgcccaggaatgaacaagg-----acagcttaaagattagaagcaaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486114 449 - 192294377 cggaaagtggggagtgctgattggttgggttggagattaaataattgggggtcaaagtgaatt---cttggtgacttctgttcctagatgggatctcagaactggttgacccagattacccttctgggtagtgtctgtcatctgctgcattggaatgcagggtctgcagaagatctcaagcattgatcttaggctttacaatattgatgttattcccaggagcaatttgaggaggttcagactcttgcag----------------ccctaaagcataatttctaatcttggagctaatgtgttagtcctacaaaggcagactggtccc-caggcaagaaggaggtcttttggggaaagggctgttat----caattttgtttcacagtcaaactatatattaaattcctttccaaggttatttaggcctatgcccaggaatgaacaagg-----acagcttaaagattagaagcaaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5930937 449 + 9440265 cggaaagtggggagtgctgattggttgggttggagattaaataattgggggtcaaagtgaatt---cttggtgacttctgttcctagatgggatctcagaactggttgacccagattacccttctgggtagtgtctgtcatctgctgcattggaatgcagggtctgcagaagatctcaagcattgatcttaggctttacaatattgatgttattcccaggagcaatttgaggaggttcagactcttgcag----------------ccctaaaccataatttctaatcttggagctaatgtgttagtcctacaaaggcagactggtccc-caggcaagaaggaggtctttttgggaaagggctattat----caattttgtttcacagtcaaactatatattaaattcctttccagggttatttaggcctatgcccgggaatgaacaagg-----acagcttaaagattagaagcaaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675210 449 + 21915920 cggaaagtggggagtgctgattggttgggttggagattaaataattgggggtcaaagtgaatt---cttggtgacttctgtccctagatgggatctcagaactagttgacccagattacccttctgggtagtgtctgtcatctgctgcattggagtgcagggtctgcaaaagatctcaagcattgatcttaggctttacaatagtgatgtcattccgaggagcaatttggggaggttcagactcttgcag----------------ccctaaaccatagtttctaatcttgtagctaatgtgttagtcctacaaaggcagactggtccc-caggcaagaagggggtcttttcgggaaagggctattat----caattttgtttcacagtcaaactatatattaaattcctttccaaggttatttaggcttatgcccaggaatgaacaaag-----acagcttaaagattggaagcaaa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12311931 448 - 90373283 cgggaagtggggaatgctgattggttgggcgggagattaaataattgggggtcaaagtgagtt---cttgatgacttctgttcttagatgggatctcagaactggttgg-ccagattacccttctgggtagtgtctgtcatctgctgcattggaatccagggtctgcaaaagatctcaagcattgatcttaggctttacaatattgatgttattcccaggagcaatttggggaggttcagactcttgcag----------------ccctaaaccataatttctaatcttgaagctaatgtgttagtcctacaaaggcagactggtccc-caggcaagaagcgggtcttttcgggaaagggctattat----aaattttgtttcacagtcaaactatgtattaaattcctttccaaggttatttaggcctatgcccaggaatgaacaaag-----acagcttaaagattggaagcaaa i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623237 449 - 3237654 cgggaagtggggagtgctgattggttgggttggagattaaataattgggggtcaaagtgagtt---cttgatgacttctgttcttagatgggatctcagaactggttgagccagattacccttctgggtagtgtctgtcatctgctgcgttggaatgcagggtctgcaaaagatctcaagcattgatcttcggctttacaatagtgatgttattcccaggagcaatttggggaggttcagactcttgcaa----------------ccctaaaccataatttctaatcttgtagctaatgtggtagtcctacaaaggcagactggtccc-caggcaagaagggggtcttttcaggaaagggctattat----caattttgtttcacagtctaactacatattaaattcctttccaaggttatttaggcctatgcccaggaatgaacaagg-----acagcttaaagattagaagcaaa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19152219 461 + 50472720 caggaagtggagagtgctgactggttgggttggagatgaaataatagggggttaaagtgagttcttcttgctgacttctgttcctagatggggtggcagaactagttgagccagattacccttctgggtgg----tgtcatctgctgcatcagaatgtagggtctgcaaaagatctcaagcactgatcttatgctttgcaatagtgatgttattcccaagagcaatttggagaggttcagactcttgcagctggaggttgtatgaccactaaacgataatctctaatcttgtagccaatgtgttagtcctacaaaggtaaagtggttcc-tatgaaagaagagggtcttttcgggaaagggttattat----cgattttgtttgagagtcaaact-------aaagttattcccagg-ttatttaggcctatgcccaggaatgaacaaggttcatttaacttaaaggttaaaagcaag i calJac3.chr21 C 0 I 325 s saiBol1.JH378168 2500813 460 + 13128814 caggaagtggggagggctaattggttgggttggagatgaaataacagggggtcaaagtgagttcttcttgctgacttctgttccaagatggggtggcagaactagttgagccagattacccttctgggtgg----tgtcatctgctgcatcagaatgcagggtctgcaaaagatctcaagcattgatcttatgctttacaacagtgatgttattcccaagagcaatttggggaggttcagactcttgcagctggaggttgcatgaacactaaacgataatttctaatcttgtagccaatgtgttagtcctacaaaggcaaagtggtcccttaggaaagaagggggtcttttcgggaaagggttattat----cgattttgtttcagagtcaaacta-----gaaatttattcccaagtttatttaggcctatgcccagaaatgaacaagg-----acagtttaaaggttaaaagcaag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038375 457 - 14377064 caggaagtggggagtgctgattggttgggttggagatgaaataatagggggtccaagtgagttctgcttgctgacttctgttcctagatggggtggcagaactagttgagtcagattacccttctgggttg----tgtcatctgctgcatcagaatgcagagtctgcaaaagatctcaagcattgatcttatgctttacaacagtgatgttattcccaagagcaatttggggaggttcagactcttgcagctggaggttgcatgaccactaaacgataatttctaatcttgtagcca--gtgttagtcttacaaaggcaaagtcgtccc-taggaaagaagggggtcttttcgggaaagggttattat----cgatattgtttcagagtcaagcca-----gaaatttattccccaggttatttaggcatatgcccaggaatgaacaagg-----acatcttaaaggttgaaagcaag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086027 463 + 9889416 caggaagtagggagtgctgattggttgggttggagatgaaataatagggggtcaaagtgagttcttcttgctgacttctgttcctagatggggtggcagaactagttgagccagattacccttctgggcgg----tgtcatctgctgcatcagaatgcgggttctgcaaaagttctcaagcattgatcttatgctttacaacagtgatgtcattcccaagagcaatttggggaggttcagactcttgcagctggaggttgtatgaccactaaatgataatttctaatcttgtagccaacgtgttagtcctacaaaggcaaagtggtccc-taggaaagaagggggtcttttcgggaaagggctattataatacgattttgtttcagagtcaaacta-----taaatttattcccaaggttatttaggcctatgcccaggaatgaacaagg-----acagcttaaatgttaaaagcaag i aotNan1.NW_018487195v1 I 8 C 0 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=598776.000000 s hg38.chr21_GL383578v2_alt 51304 70 + 63917 atggagttggttaggtctgacctctttcacggtcgtaatttcctcagttatgatttttgcaaaggcggtt s panTro5.chr21 888801 70 + 33445071 atggagttggttaggtctgacctctttcacggtcataatttcctcagttatgatttttgcaaaggcggtt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573435 70 + 46275980 atggagttggttaggtctgacctctttcacggtcgtaatttcctcagttatgatttttgcaaaggcggtt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485558 70 - 13858734 atggagttggctaggtctgacctctttcacggtcataatttcctcagttatgatttttgcaaaggcggtt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613894 70 + 32716333 atggagttggttaggtctgatctctttcactgtcataattgcctcagttatgatttttgcaaaggtggtt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678488 70 - 185818997 gtggagttggttaggtccgatctctttcactgtcataatttcctcagttacgatttttgcaaagacggtt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486563 70 - 192294377 gtggagttggttaggtccgatctctttcactgtcaaaatttcctcagttacgatttttgcaaagacggtt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931386 70 + 9440265 gtggagttggttaggtccgatctctttcactgtcataatttcctcagttacgatttttgcaaagacggtt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675659 70 + 21915920 atggagttggttaggtccgatctctttcactgtcataatttcctgagttacgatttttgcaaagacggtt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312379 70 - 90373283 atggagttggttaggtccgatctctttcactgtcataatttcctcagttacgatttttgcaaagacggtt i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623686 70 - 3237654 atggaattggttaggtccgatctctttcactgtcataatttcctcagttacgatttttgcaaagacagtt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153005 69 + 50472720 atggagttgggt-ggactgatctctttcactgccataatttcctcagctatgatatttgaaaaggcagtt i calJac3.chr21 I 325 C 0 s saiBol1.JH378168 2501273 70 + 13128814 atggagttggttaggtctgatctctttcactgtcataatttcctcagttatgatttttgcaaaggcagtt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038832 70 - 14377064 ttggagttggttaggtctgatctctttccctgtcataatttcctcagttatgatttttgcaaaggcagtt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086490 70 + 9889416 atggagttggttaggtcttatctcttccactgtcataatttcctcagttatgatttttgcaaaggcagtt i aotNan1.NW_018487195v1 C 0 C 0 e mm10.chr16 75834478 9 + 98207768 I e micMur3.chr31 16856927 13 + 47401472 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=16152.000000 s hg38.chr21_GL383578v2_alt 51374 2 + 63917 tc s panTro5.chr21 888871 2 + 33445071 tc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573505 2 + 46275980 tc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485628 2 - 13858734 tc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613964 2 + 32716333 tT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678558 2 - 185818997 tc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486633 2 - 192294377 tc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931456 2 + 9440265 tc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675729 2 + 21915920 tc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312449 2 - 90373283 tc i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623756 2 - 3237654 tG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153074 2 + 50472720 tc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501343 2 + 13128814 tc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038902 2 - 14377064 tc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086560 2 + 9889416 tc i aotNan1.NW_018487195v1 C 0 C 0 s mm10.chr16 75834487 2 + 98207768 TT i mm10.chr16 I 9 C 0 e micMur3.chr31 16856927 13 + 47401472 I e otoGar3.GL873528 18343806 0 - 38779656 C e dasNov3.JH568778 657661 0 - 6883506 C e canFam3.chr31 11454673 0 + 39895921 C e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=7111.000000 s hg38.chr21_GL383578v2_alt 51376 1 + 63917 a s panTro5.chr21 888873 1 + 33445071 a i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573507 1 + 46275980 a i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485630 1 - 13858734 a i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613966 1 + 32716333 G i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678560 1 - 185818997 G i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486635 1 - 192294377 G i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931458 1 + 9440265 G i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675731 1 + 21915920 a i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312451 1 - 90373283 a i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623758 1 - 3237654 G i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153076 1 + 50472720 a i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501345 1 + 13128814 a i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038904 1 - 14377064 a i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086562 1 + 9889416 a i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18343806 1 - 38779656 A i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75834489 1 + 98207768 A i mm10.chr16 C 0 C 0 s canFam3.chr31 11454673 1 + 39895921 A i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657661 1 - 6883506 A i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16856927 13 + 47401472 I e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=844425.000000 s hg38.chr21_GL383578v2_alt 51377 66 + 63917 TAACATTCAAACTTAATGCCCATATGCTTCTGTCAGATCAACGGTATAATCAGGGAAATAGTTTAC---- s panTro5.chr21 888874 66 + 33445071 TAACATTCAAAGTTAATGCCCATATGCTTCTGTCAGATCAACGGTATAATCAGGGAAATAGTTTAC---- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573508 64 + 46275980 TAACATTCAAAC--AATGCCCATATGCTTCTGTCAGATCAACGGTATAATCAGGGAAATAGTTTAC---- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485631 66 - 13858734 TAACTTTCAAACTTAATGCCCATATGCTTCTGTCAGATCAACCGTATAATCAGGGAAATAGTCTAC---- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1613967 66 + 32716333 TAACATTCAAACTTAATGCTCATATGCTACTGTCAGATCAACGGTATAATCAGGGAAATAGTCTAC---- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678561 66 - 185818997 TAACATTCAAACTTAATGCCCATGTGCTTCTGTCAGATTAACGGTATAATCAGGAAAATAGTCTGC---- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486636 66 - 192294377 TAACATTCAAACTTAATGCCCATGTGCTTCTGTCAGATTAACGGTATAATCAGGAAAATAGTCTGC---- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931459 66 + 9440265 TAACATTCAAACTTAATGCCCATGTGCTTCTGTCAGATTAACGGTATAATCAGGAAAATAGTCTGC---- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675732 66 + 21915920 TAACATTCAAACTTAATGCCCATGTGCTTCTGTCAGATTAACGGTATAATCAGGAAAATAGTCTGC---- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312452 66 - 90373283 TAACATTCAAACTTAATGCCCATGTGCTTCTGTCAGATTAACGGTATAATCAGGAAAATAGTCTGC---- i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623759 66 - 3237654 TAACATTCAAACTTAATGCCCATGTGCTTCTGTCAGATTAACGGTATAATCAGGAAAACAGTCTGC---- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153077 64 + 50472720 TAACATTCAAACTTAATGCCCATATGA-TCTGTCAGATTAAT-GCATAATCAGGGAAGTAGTTTAC---- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501346 66 + 13128814 TAACATTCAAACTTAATGCCCATATGCTTCTGTCAGATTAATGGCATAATCAGGGAAGTAGTTTAC---- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038905 66 - 14377064 TAACATTCAAACTTAATGCCCATATGCTTCTGTCAGATTAATGGCATAATCAGGGAAGTAGTCTAC---- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086563 64 + 9889416 TAACATTCAAACTTAATGCCCATATGCTTCTGTCAGATTAATGGCATAATCAAGGAAGTAGTTT------ i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16856940 66 + 47401472 TAACATTCAAATTTAATGTCCATATGCTTCAGTCAGATTAATGACATAATCAGAGAAATAGTCTAC---- i micMur3.chr31 I 13 I 20 s otoGar3.GL873528 18343807 66 - 38779656 TGGCATTCAGATTTAATGCCCATATGCTGCAGTCAGATTAATGACATAATCAGGGAAATAGTCTAC---- i otoGar3.GL873528 C 0 I 4 s mm10.chr16 75834490 59 + 98207768 CGACATTCAGCTCTAATTCTCA-ATGCTTCATTCAGATTAACATGTTAATCAGGAAAATA---------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11454674 64 + 39895921 TAATATTCAGACCAAATACCCATGT--TTCAATCAGATTAATAATGTAATTAGGAAAATAGTCTAC---- i canFam3.chr31 C 0 I 4 s dasNov3.JH568778 657662 70 - 6883506 TAACATTCAGACTTAATGCCCATATGCTTCAGTCCAATTAATGGAGTAATCAGGGTAACAGCATATAAAC i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=200480.000000 s hg38.chr21_GL383578v2_alt 51443 17 + 63917 TAA----GAATGCGTGTCACT s panTro5.chr21 888940 21 + 33445071 TAACTAAGAATGCGTGTCACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573572 21 + 46275980 TAACTAAGAATGCGTGTCACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485697 21 - 13858734 TAACTAAGAATGCATGTCACT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614033 21 + 32716333 TAACTAAGAATGCATGTCACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678627 21 - 185818997 TAACTAAGAATGCATGTCACT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486702 21 - 192294377 TAACTAAGAATGCATGTCACT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931525 21 + 9440265 TAACTAAGAATGCATGTCACT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675798 21 + 21915920 TAACTAAGAATGCATGTCACT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312518 21 - 90373283 TAACTAAGAATGCATGTCCCT i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623825 21 - 3237654 TAACTAAGAATGCATGTCACT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153141 21 + 50472720 TAACTAAGAATGCATGTCACT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501412 21 + 13128814 CAACTAAGAATGCATGTCACT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7038971 21 - 14377064 CAACTAAGAATGCATGTCACT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086627 19 + 9889416 --ACTAAGAATGCATGTCACT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18343877 17 - 38779656 ----TAAGAATACGTTCCAAG i otoGar3.GL873528 I 4 C 0 s mm10.chr16 75834549 10 + 98207768 ---------ATGTCTGTCT-- i mm10.chr16 C 0 C 0 s canFam3.chr31 11454742 17 + 39895921 ----TAAGAACGCATCCTACT i canFam3.chr31 I 4 C 0 s dasNov3.JH568778 657732 17 - 6883506 ----TGAGAATACATTGTACT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16857006 20 + 47401472 I e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=901619.000000 s hg38.chr21_GL383578v2_alt 51460 71 + 63917 CTAAAATGGTACCTGAACCTTT---TGTCATCCACAGCATAATTTTAACAGCTTTGATAAGGGACATTTTTCCC s panTro5.chr21 888961 71 + 33445071 CTAAAATGGTACCTGAACCTTT---TGTCATCCACAGCATAATTTTAACAACTTTGATAAGGGACATTTTTCCC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573593 71 + 46275980 CTAAAATGGTACCTGAACCTTT---TGTCATCCACAGCATAATTTTAACAGCTTTGATAAGGGACATTTTTCCC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485718 71 - 13858734 CTAAAATGGTACCTGAACCTTT---TGTCATCCACAGCATAATTTTAACAGCTTTGATAAGGGACATTTTTCCC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614054 71 + 32716333 CTTAAATGGTACCTGAACCTTT---TGTCATCCACAGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678648 71 - 185818997 CGAAAATGGTACCTGAACCTTT---TATCATCCAGTGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486723 71 - 192294377 CGAAAATGGTACCTGAACCTTT---TATCATCCAGTGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931546 71 + 9440265 CGAAAATGGTACCTGAACCTTT---TATCATCCAGTGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675819 71 + 21915920 CGAAAATGGTACCTGAACCTTT---TATCATCCAGTGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312539 71 - 90373283 CGAAAATGGTACCTGAACCTTT---TATCATCCAGTGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i chlSab2.chr2 C 0 C 0 s colAng1.NW_012116933v1 623846 71 - 3237654 CGAAAATGGTACCTGAACCTTT---TATCATCCAGTGCATAATTTTAACTGCTTTGATAAGGGACATTTTTCCC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153162 71 + 50472720 CTGAAATGGTACCTGAACCTTG---TATCATCCACAGCATAATTTTGACTGCTTTGATAAGGAACATTTTTTCC i calJac3.chr21 C 0 I 1 s saiBol1.JH378168 2501433 71 + 13128814 CTAAAATGGTACCTGAACCTTA---TATCATCCACAGCATAATTTTAACTGCTCTGATAAGGAACATTTTTTCC i saiBol1.JH378168 C 0 I 1 s cebCap1.NW_016107322v1 7038992 71 - 14377064 CTAAAATGGTACCTGAACCTTA---TATTATCCACAGCATAATTTTAACTGCTTTGATAAGGAACATTTTTTCC i cebCap1.NW_016107322v1 C 0 I 1 s aotNan1.NW_018487195v1 6086646 71 + 9889416 CTAAAATGGTACCTGAACCTTA---TATCATCCACAGCATAATTTTAACTGCTTTGATAAGGAACATTTTTTCC i aotNan1.NW_018487195v1 C 0 I 1 s micMur3.chr31 16857026 71 + 47401472 CTAAAATGGTACCTGAACCTTA---TGTTATCTGCAGCATAATTTTAACTGATATAATAAGAAACATTTTCCCC i micMur3.chr31 I 20 C 0 s otoGar3.GL873528 18343894 70 - 38779656 -GAAAATGGCCTCTGAACCGTA---CGATTTCCTCAACATAATTTTAACTGCTTTAATAAGAAACATTTTCCCT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75834559 70 + 98207768 CTAAAATGGTACCGGCATTCTT---TGTGATTCTTAGCATAATTTTAATTGCTTTAATTAAGGCCATTTTCTC- i mm10.chr16 C 0 C 0 s canFam3.chr31 11454759 73 + 39895921 TTAAAATAGGACTTGGACCTTATTCTGCTATCCATAGCATAATTTTATGTACTTT-ATGTGGGATATTTTCCCC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 657749 61 - 6883506 CTAAAGTGGTACCTGAACCTTA---TGCTATTTG-AACATAATTTTAACTACTTTA---------ATTTTTCCC i dasNov3.JH568778 C 0 C 0 e manLeu1.NW_012107264v1 648611 6079 + 1337817 I a score=1488257.000000 s hg38.chr21_GL383578v2_alt 51531 97 + 63917 AATCAACCTTTGCTACTCTGAAGACAT-GATACAAATTT-TTGAGTAAACAATGTCTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAGTC s panTro5.chr21 889032 97 + 33445071 AATCAACCTTTGCTACTCTGAAGACAT-GATACAAATTT-TTGAGTAAACAATGTCTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAGTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573664 97 + 46275980 AATCAACCTTTGCTACTCTGAAGACAT-GATACAAATTT-TTGAGTAAACAATGTCTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAGTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485789 97 - 13858734 AATCAACCTTTGCTACTCTGAAGACAT-GATACAAATTT-TTGAGTAAACAATGTCTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAGTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614125 97 + 32716333 AATCAGCCTTTGCTACTCTGAAGACAT-GATACAAATTT-TTGAGTAAACAATGTCAAAATCAAA----GTGCATTGTTTATTCTCAAATACATATTTAAGTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678719 97 - 185818997 AATCAACTTTTGCTACTATGAAGACAT-GATACAAATTT-CTGAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486794 97 - 192294377 AATCAACTTTTGCTACTATGAAGACAT-GATACAAATTT-CTGAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931617 97 + 9440265 AATCAACTTTTGCTACTATGAAGACAT-GATACAAATTT-CTAAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675890 97 + 21915920 AATCAACTTTTGCTACTATGAAGACAT-GATACAAATTT-CTGAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312610 97 - 90373283 AATCAACTTTTGCAACTATGAAGACAT-GATACAAATTT-CTGAGTAAACAATGTTTAAATCAAA----GTGAAATGTTTATTCTCAAATACATATTTAAATC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 654690 97 + 1337817 AATCAACTTTTGCTACTATGAAGACAT-GATACAAATTT-CTGAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i manLeu1.NW_012107264v1 I 6079 C 0 s colAng1.NW_012116933v1 623917 97 - 3237654 AATCAACCTTTGCTACTATGAAGACAT-GATACAAATTT-CTGAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAGTC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153234 97 + 50472720 AATCAACCTTTGCTGCTCTGAATACAT-GATATAAGTTT-TTAAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i calJac3.chr21 I 1 C 0 s saiBol1.JH378168 2501505 97 + 13128814 AATCAACCTTTGCTACTCTGAATACAT-GATATAAGTTT-TTAAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i saiBol1.JH378168 I 1 C 0 s cebCap1.NW_016107322v1 7039064 97 - 14377064 AGCCAACCTTTGCTACTCTGAATACAT-GATATAAGTTT-TTAAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i cebCap1.NW_016107322v1 I 1 C 0 s aotNan1.NW_018487195v1 6086718 97 + 9889416 AGTCAACCTTTGCTACTCTGAATACAT-GATAAAAGTTT-TTAAGTAAACAATGTTTAAATCAAA----GTGCAATGTTTATTCTCAAATACATATTTAAATC i aotNan1.NW_018487195v1 I 1 C 0 s micMur3.chr31 16857097 97 + 47401472 AATCAACCTTTGCTACTCTGAAGATGT-GATATAATTTT-TTGAGTAAACAATGTTTAAACTAAA----GTGTAATGTTTATTCTCAAATGCATATGTAAGTC i micMur3.chr31 C 0 I 2 s otoGar3.GL873528 18343964 97 - 38779656 AATCAACCTTTGCTATTCTGAAGATGT-GATATAATTTT-TTGAGTAAACAATGCTTAAACTAAA----GTGCAATGTTTATTCTCAAATGCATATTTAAGTT i otoGar3.GL873528 C 0 I 2 s mm10.chr16 75834629 92 + 98207768 AATGAACCATTGCTACTCTGAAAATGT-AATTGTAATTT--TGAGT---CAACGTTTAAGCCGAC-----TACAATATTTATTCTTGAATATCTATTTGACTT i mm10.chr16 C 0 I 2 s canFam3.chr31 11454832 103 + 39895921 AATCAGCCTTTGCTGCACTGAAGAAGTCGTTATAATTTTTTTGAGTAAACAGTGTTTTGAGTAAAGAGAGTGCAATGTTTATTCTCAAATACACATTTGAGTT i canFam3.chr31 C 0 I 199 s dasNov3.JH568778 657810 96 - 6883506 ACTCAACATTTGCTGCTCTGAAGAAGC-CAT-TATATTT-TTGAGTAAACAATGTTTAAAACAAA----ATGCAGTGTTTATTCTCAAATACACATTTGAATC i dasNov3.JH568778 C 0 C 0 a score=1688514.000000 s hg38.chr21_GL383578v2_alt 51628 135 + 63917 AATG-----TAGTCTTTTTAGTTTGATT-AGATGTGAATTT-CTCATACTTTGTGCTATATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACA-TTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG s panTro5.chr21 889129 135 + 33445071 AATG-----TAGTCTTTTTAGTTTGATT-AGATGTGAATTT-CTCATACTTTGTGCTATATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACA-TTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573761 135 + 46275980 AATG-----TAGTCTTTTTAGTTTGATT-AGATGTGAATTT-CTCATACTTTGTGCTATATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACA-TTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 485886 135 - 13858734 AATG-----TAGTCTTTTTAGTTTGATT-AGATGTGAATTT-CTCATACTTTGTGCTATATTAAGGAGTAACCATC-CAAGTT---TTTCTCTTTTTGTTCACTTAAACA-TTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614222 135 + 32716333 AATG-----TAGTCTTTTTAGTTTGATT-GAATGTGAATTT-CTCATACTTTGTGCTATGTTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACTTAAACA-TTTTCTTCTCCTACATTAAAATACACAAAGGTAGTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678816 137 - 185818997 AATG-----TAGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159486891 137 - 192294377 AATG-----TAGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931714 137 + 9440265 AATG-----TAGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5675987 137 + 21915920 AATG-----TAGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312707 137 - 90373283 AATG-----TCGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 654787 137 + 1337817 AATG-----TAGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTCTTCTCCTACATTAAGATACACAAAGGCAGTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624014 137 - 3237654 AATG-----TAGTCTTTTTAGTTTGATTAAAATATGAATTT-CTCATACTTTGTGCTGTATTAAGAAATAACCATC-TAAGTT---TTTCTCTTTTTGTTCACCTAAACATTTTTATTCTCCTACATTAAAATACACAAAGGCAGTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19153331 137 + 50472720 AATGT---ATAGTCTTTTTAGTTTAATT-AAATGTGATTTT-CTCATACTTTGTGTTAGATTAAGAATTAACTATG-TAAGCT---TCTCTCTTTTGGTTTGCCTAAACA-TTTTCTTCTCCTATATTAAGATACATGAAAGCAGtt i calJac3.chr21 C 0 I 8216 s saiBol1.JH378168 2501602 136 + 13128814 AATGT---ATAGTCTTTTTAGTTTAATT-AAATGTGATTTT-CTTATACTTTGTGTTAGATTAAGAAATAACTATG-TAAGGC---TTTCTCTTTTGGTTCACCTAAACA-TTTTCTTCTCCTATATTAAGATACATG-AAGCAGTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039161 136 - 14377064 AATGT---ATAGTCTTTTTAGTTTAATT-AAATGTGATTTT-CTCATACTTTGTGTT-GATTAAGAAATAACTATG-TAAGGT---TTTCTCTTTTGGTTCACCTAAACA-TTTTATTCTCCTATATTAAGATACATGAAGGCAGTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086815 137 + 9889416 AATGT---ATAGTCTTTTTAGTTTAATT-AAATGTGATTTT-CTCATACTTTGTGTTAGATTAAGAAATAACTATG-TAAGAT---TTTCTCTTTTGGTTCACCTAAACA-TTTTCTTCTCCTATATTAAGATACATGAAGGCAGTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857196 134 + 47401472 AATA-----TGGTGTTTTTAGTTTGATT-AAATGTGAATTT-CTCATACTGAGTGCTAGATTAAGATATAAATATC-TAAGCT---TTTCTCTTTTT-TCCCCCTTAACA-TTTTCTTCTACCACATTAAGTTACACAAAGGCAGTT i micMur3.chr31 I 2 C 0 s otoGar3.GL873528 18344063 130 - 38779656 AACA-------GTCTTTTTAGTTTGATT-AAATGTGAATTT-CTCATACTTAGTGCTAGATTATGAAATAACTATG-TAAGTT---TTTCTCTTTTT---ACCCTTAACA-TTTTCTTCTCCCACATTAAAGTACACAAAGGCAGTT i otoGar3.GL873528 I 2 C 0 s mm10.chr16 75834723 121 + 98207768 AATA-----CAGTCTTTTTCACTTCATTTAAATAGAAATTTGCTTATA--TAGCAGTGAATTAAGAAATA--TGTCATAACAT---TTTCTTTTTCT-TCCTTCTTAACA----TCTTCTTTTATATTAA-------ATAGGTAG-- i mm10.chr16 I 2 C 0 s canFam3.chr31 11455134 131 + 39895921 AACA-----TTGTGTTTTTAGTCTGATT-AAATGTGAATTT-TTCATATTTAGTGTGAGATTATGACATAAAGATC-TCACTTAACTTTTTCTTTTTTCTCCC--------TTTTGGTTTCCCTCACTAAGTTATTGGAAAGTAGTT i canFam3.chr31 I 199 C 0 s dasNov3.JH568778 657906 131 - 6883506 ----TTAAATAGTCTTTTCAGTTTGATT-AAATGCAAACTT-C---TAGTCTGTGCTAGATTAAGAAATAACAAAG-TAACAT---TTTTTTTTCCCCTTTTCCCT--CA-TCTCCCTCTCTCACATTAAGGTACGTGAAGGCAGTT i dasNov3.JH568778 C 0 C 0 a score=758554.000000 s hg38.chr21_GL383578v2_alt 51763 53 + 63917 AATTATAATTTGTTAATGGTGATCATAATAACTCAATACATGAGAAATTCAAA--------- s panTro5.chr21 889264 53 + 33445071 AATTATAATTTGTTAATGGTGATCATAATAACTCAATACATGAGAAATTCAAA--------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573896 53 + 46275980 AATTATAATTTGTTAATGGTGATCATAATAACTCAATACATGAGAAATTCAAA--------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486021 53 - 13858734 AATTATAATTTGTTAATGGTGATCATAATAACTCAATACATGAGAAATTCAAA--------- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614357 53 + 32716333 AATTATAATTTGTTCATGGTGATCATAGTAACTCAATACATGAGAAATTCAAA--------- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152678953 53 - 185818997 AATTATAATTTGTTAATGGTGATCACAGTAACTCAATACTTGAGAAATTCAAA--------- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487028 53 - 192294377 AATTATAATTTGTTAATGGTGATCACAGTAACTCAATACTTGAGAAATTCAAA--------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931851 53 + 9440265 AATTATAATTTGTTAATGGTGATCACAGTAACTCAATACTTGAGAAATTCAAA--------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676124 53 + 21915920 AATTATAATTTGTTAATGGTGATCATAGTAACTCAATACATGAGAAATTCGAA--------- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312844 53 - 90373283 AATTATAATTTGTTAATGGTGATCATAGCAACTCAATACATGAGAAATTCAAA--------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 654924 53 + 1337817 AATTACAATTTGTTAATGGTGATCATAGTAACTCAATACATGAGAAATTCGAA--------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624151 53 - 3237654 AATTATAATTTGTTAATGGTGATCATCATAACTCAATACATGAGAAATTCAAA--------- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161684 53 + 50472720 AATTATAATTTGTTAATGGTGATCATAATGACTCAAAACATAAGAAATTCAAA--------- i calJac3.chr21 I 8216 C 0 s saiBol1.JH378168 2501738 53 + 13128814 AATTATAATTTGTTAATGGTGATCATAATGACTCAAAACGTGAGAAATTCAAA--------- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039297 53 - 14377064 AATTATAATTTGTTAATGGTGATCATAATGACTCAAAATGTGAGAAATTCAAA--------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6086952 53 + 9889416 AATTATATTTTGTTAATGGTGATCATAATGACTCAAAACATGAGAAATTCAAA--------- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857330 51 + 47401472 AATTATAATGTGTAAATG--TATCATAATGACTCAAAACATGAGAAATTCAAA--------- i micMur3.chr31 C 0 I 268 s otoGar3.GL873528 18344193 51 - 38779656 AATTATAATGTGTGAATG--AATCATAATGACTCAAAACATGAGAAGTTTGAA--------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75834844 38 + 98207768 --TTATGGTTTGT-------------GTTGGCTGAAATCATGAGAAATTCAAA--------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11455265 53 + 39895921 AATTGCAGTTTGTAAATGGTGATCATAATGATTCAAAACATGAAAAATTCAAA--------- i canFam3.chr31 C 0 I 12 s dasNov3.JH568778 658037 62 - 6883506 AATCATTATTTGTTAATGGTGAGCATGATAATCTGAAACATGAGATATTTGAAATAGTCAAT i dasNov3.JH568778 C 0 C 0 a score=148816.000000 s hg38.chr21_GL383578v2_alt 51816 22 + 63917 T------------TTTTTTTCATTTCAATACAAA s panTro5.chr21 889317 22 + 33445071 T------------TTTTTTTCATTTCAATACAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573949 22 + 46275980 T------------TTTTTTTCATTTCAATACAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486074 22 - 13858734 T------------TTTTTTTCATTTCAATACAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614410 23 + 32716333 TA-----------TTTTTTTCATTTCAATACAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679006 23 - 185818997 TA-----------TTTTTTTCATTTCAATATAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487081 23 - 192294377 TA-----------TTTTTTTCATTTCAATATAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931904 22 + 9440265 T------------TTTTTTTCATTTCAATATAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676177 24 + 21915920 TA----------TTTTTTTTCATTTCAATATAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312897 23 - 90373283 TT-----------TTTTTTTCATTTCAATATAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 654977 23 + 1337817 TA-----------TTTTTTTCATTTCAATATAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624204 23 - 3237654 TA-----------TTTTTTTCATTTCAATATAAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161737 23 + 50472720 CA-----------TTTTTTCCATTTCAATACAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501791 24 + 13128814 CAT---------TTTTTTTCTATTTCAATAC-AA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039350 25 - 14377064 CAT---------TTTTTTTCTATGTCAGTACAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087005 23 + 9889416 CA-----------TTTTTTCCATTTCAATACAAG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18344244 32 - 38779656 --TGACTCAATTCATTTTGCTGTGCCAATACAAA i otoGar3.GL873528 C 0 I 143 s mm10.chr16 75834882 7 + 98207768 ---------------------------ATACTCA i mm10.chr16 C 0 I 2 s canFam3.chr31 11455330 22 + 39895921 ------------TCATGTTTAATTTCATCACAAA i canFam3.chr31 I 12 C 0 s dasNov3.JH568778 658099 22 - 6883506 ------------TCACTTTCTATTCAATTAAGAA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16857381 268 + 47401472 I a score=49900.000000 s hg38.chr21_GL383578v2_alt 51838 6 + 63917 TAAGTT s panTro5.chr21 889339 4 + 33445071 --AGTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573971 6 + 46275980 TAAGTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486096 6 - 13858734 TAAGTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614433 6 + 32716333 TAAGTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679029 6 - 185818997 TACGTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487104 6 - 192294377 TACGTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931926 6 + 9440265 TACGTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676201 6 + 21915920 TACGTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312920 6 - 90373283 TACGTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655000 6 + 1337817 TACGTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624227 6 - 3237654 TACGTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161760 6 + 50472720 TTAGTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501815 6 + 13128814 TTAGTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039375 6 - 14377064 TTAGTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087028 6 + 9889416 TTAGTT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18344419 6 - 38779656 TGGGTT i otoGar3.GL873528 I 143 I 10 s mm10.chr16 75834891 6 + 98207768 TCACTT i mm10.chr16 I 2 C 0 s canFam3.chr31 11455352 6 + 39895921 TCAATT i canFam3.chr31 C 0 I 142 s dasNov3.JH568778 658121 6 - 6883506 TCAGGT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16857381 268 + 47401472 I a score=300653.000000 s hg38.chr21_GL383578v2_alt 51844 28 + 63917 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT s panTro5.chr21 889343 28 + 33445071 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14573977 28 + 46275980 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486102 28 - 13858734 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614439 28 + 32716333 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679035 28 - 185818997 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487110 28 - 192294377 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931932 28 + 9440265 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676207 28 + 21915920 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312926 28 - 90373283 ----TTT----------AGGACAGGCATACAGAG--------------AAAAACTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655006 28 + 1337817 ----TTC----------AGGACAGGCATACAGAG--------------AAAAACTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624233 28 - 3237654 ----TTG----------AGGACAGGCATACAGAG--------------AAAAACTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161766 26 + 50472720 ----TTC----------AGGACAGAC--ACAGAG--------------GAAAACAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501821 28 + 13128814 ----TTC----------AAGACAGACATACAGGG--------------AAAAACAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039381 28 - 14377064 ----TTC----------AGGACACACATACAGGG--------------AAAAGCAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087034 28 + 9889416 ----TTC----------AGGACAGACATACAGAG--------------AAAAATAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18344435 42 - 38779656 ----TTC----------AGGATAAGAGTACAGAGATTAAAAAAAAAAAAAAAGTAA i otoGar3.GL873528 I 10 C 0 s mm10.chr16 75834897 25 + 98207768 ----TCT----------AGGCCAC---TACAAAT--------------TAATACTT i mm10.chr16 C 0 C 0 s canFam3.chr31 11455500 28 + 39895921 ----TTC----------AGGACAAGAGAATAGAG--------------AAAAAAGG i canFam3.chr31 I 142 I 5 s dasNov3.JH568778 658127 42 - 6883506 TTAATTCCCACAAAGGGAAGAAAGGAATAAAGGA--------------TGAAACTG i dasNov3.JH568778 C 0 I 135 e micMur3.chr31 16857381 268 + 47401472 I a score=173516.000000 s hg38.chr21_GL383578v2_alt 51872 12 + 63917 GAGTG-CATTCTG s panTro5.chr21 889371 12 + 33445071 GAGTG-CATTCTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574005 12 + 46275980 GAGTG-CATTCTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486130 12 - 13858734 GAGTG-CATTCTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614467 12 + 32716333 GAGTG-CATTCTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679063 12 - 185818997 GAGTG-CATTCTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487138 12 - 192294377 GAGTG-CATTCTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931960 12 + 9440265 GAGTG-CATTCTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676235 12 + 21915920 GAGTG-CATTCTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312954 12 - 90373283 GAGTG-CATTCTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655034 12 + 1337817 GAGTG-CATTCTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624261 12 - 3237654 GAGTG-CATTCTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161792 12 + 50472720 GAGTG-CATTCTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501849 12 + 13128814 GAGTG-CATTCCG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039409 12 - 14377064 GAGTA-CATTCTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087062 12 + 9889416 GAGTG-CATTCTG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18344477 12 - 38779656 GAGTG-AATTTTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75834922 13 + 98207768 AAGTACCATCCTG i mm10.chr16 C 0 I 953 s canFam3.chr31 11455533 12 + 39895921 GAATG-AATTCTG i canFam3.chr31 I 5 C 0 s dasNov3.JH568778 658304 12 - 6883506 GAGTA-AATTTTG i dasNov3.JH568778 I 135 C 0 e micMur3.chr31 16857381 268 + 47401472 I a score=219919.000000 s hg38.chr21_GL383578v2_alt 51884 20 + 63917 CTTTGTTTGGCTCATTTAGA s panTro5.chr21 889383 20 + 33445071 CTTTGTTTGGCTCATTTAGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574017 20 + 46275980 CTTTGTTTGGCTCATTTAGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486142 20 - 13858734 CTTTGTTTGGCTCATTTAGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614479 20 + 32716333 CTTTGTTTGGCTCATTTAGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679075 20 - 185818997 CTTCGTTTGGCTGATTTAGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487150 20 - 192294377 CTTCGTTTGGCTGATTTAGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931972 20 + 9440265 CTTCGTTTGGCTGATTTAGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676247 20 + 21915920 CTTCGTTTGGCTCATTTAGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312966 20 - 90373283 CTTCGTTTGGCTTATTTAGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655046 20 + 1337817 CTTCGTTTGGCTCATTTAGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624273 20 - 3237654 CTTTGTTTGGCTCATTTAGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161804 20 + 50472720 CTTTGTTTGGCTCATTTAGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501861 16 + 13128814 C----TTTGGGTCATTTAGA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039421 20 - 14377064 CTTTGTTTGGCTGATTTAGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087074 20 + 9889416 CTTTGTTTGGCTCATTTAGA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18344489 20 - 38779656 CTCTATTTAGCACAGTCAGG i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11455545 15 + 39895921 CTCTGTATGGCTTAT----- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 658316 20 - 6883506 CTATGTTTGGATCATACAGG i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75834935 953 + 98207768 I e micMur3.chr31 16857381 268 + 47401472 I a score=815674.000000 s hg38.chr21_GL383578v2_alt 51904 61 + 63917 AG-AAAAACTG--TAGCAGGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- s panTro5.chr21 889403 61 + 33445071 AG-AAAAACTG--TAGCAGGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574037 62 + 46275980 AGAAAAAACAG--TAGCAGGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486162 61 - 13858734 AG-AAAAACTG--TAGCAGGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614499 61 + 32716333 AG-AAAAACTG--TAGCAGGTAAAATCGGT-GGGG-AAAAATTAGACAGGTTTATCTTTTAAAAAT--- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679095 61 - 185818997 AG-AAAAACAG--TAGCAAGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487170 61 - 192294377 AG-AAAAACAG--TAGCAAGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5931992 61 + 9440265 AG-AAAAACAG--TAGCAAGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676267 61 + 21915920 AG-AAAAACTG--TAGCAAGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12312986 57 - 90373283 AG-AAAAACTG--TAGCAAGTAAAATT-----GGG-AAACATTAGACAAGTTTATCTTTTAAAAAT--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655066 61 + 1337817 AG-AAAAACTG--TAGCAAGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624293 61 - 3237654 AG-AAAAACTG--TAGCAAGTAAAATCGGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161824 62 + 50472720 AG-AAAAACTG--TAACAGGTATAATCAGT-GGGGTAAAAATTAGACAAGTTTATCTTTTAAAAGT--- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501877 62 + 13128814 AG-AAAAACTG--TAGCAGGTAAAATCAGT-GGGGAAAAAATTAGACAAGTTTATCTTTTAAAAAT--- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039441 61 - 14377064 AT-AAAAACTG--TAGCAGGTAAAATCAGT-AGGG-AAAAATTAGACAAGTTTATCTTTTAAAAAT--- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087094 62 + 9889416 AG-AAAAACTG--TAGCAGGTAAAATCAGT-GGGGAAAAAATTAGACAAGTTTATCTTTTAAAAAT--- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857649 62 + 47401472 AG-AGAAACTG--TGGCAGATAAAATCAGTAGGAA-AAAAATTAGACAAGTTTATCTTTTAAAACT--- i micMur3.chr31 I 268 C 0 s otoGar3.GL873528 18344509 61 - 38779656 AA-AAAATCTG--TGGCAGGTAGAATCAGT-GGGG-AAAAATTAGACAAGTTTATCTTTTAAAACT--- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11455560 59 + 39895921 -----AAACTGTTTGGCAGATAGAATCAAT-GAGA-AAAAAACAGACAAGTTAATCTTTTatgaat--- i canFam3.chr31 C 0 I 1063 s dasNov3.JH568778 658336 65 - 6883506 AG-AAAAATTA--TAGTAGGTTGACTCAGT-GAGGAAAAAATGAGGCAAGCTTATCTTTTTCACTGTTT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75834935 953 + 98207768 I a score=415085.000000 s hg38.chr21_GL383578v2_alt 51965 31 + 63917 TATTTTCATTGTGGAA-TAATACATGTTCACA s panTro5.chr21 889464 31 + 33445071 TATTTTCATTGTGGAA-TAATACATGTTCACA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574099 31 + 46275980 TATTTTCATTGTGGAA-TAATACATGTTCACA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486223 31 - 13858734 TATTTTCATTGTGGAA-TAATACATGTTCACA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614560 31 + 32716333 TATTTTCATTGTGGAA-TAATACATGTTCACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679156 31 - 185818997 TATTTTCATTGTGAAA-TAATACGTGTTCACA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487231 31 - 192294377 TATTTTCATTGTGAAA-TAATACGTGTTCACA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932053 31 + 9440265 TATTTTCATTGTGAAA-TAATACGTGTTCACA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676328 31 + 21915920 TATTTTCATTGTGAAA-TAATACGTGTTCACA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313043 31 - 90373283 TATTTTCATTGTGAAA-TAATACGTGTTCACA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655127 31 + 1337817 TATTTTCATTGTGAAA-TAATACGTGTTCACA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624354 31 - 3237654 TATTTTCATTGTGGAA-TAATACATGCTCACA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161886 31 + 50472720 TATTTTCATTGTTAAA-TAATAAATGTTCACA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501939 31 + 13128814 TATTTTCATTGTGAAA-TAATACATGTTCACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039502 29 - 14377064 TATTTTCATTGTGAAA-TAATACATGTTCA-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087156 31 + 9889416 TATTTTCATTATGAAA-TAATACATGTTCACA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857711 31 + 47401472 TATTTTCATTATAAAA-TAATACATGTTCACA i micMur3.chr31 C 0 I 47 s otoGar3.GL873528 18344570 31 - 38779656 TATTTTCTTTGTAAAA-TATTGCAAGTTCACA i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 658401 32 - 6883506 TATTTTCATTGTAAAAGTAATACATGCTAACA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75834935 953 + 98207768 I e canFam3.chr31 11455619 1063 + 39895921 I a score=413446.000000 s hg38.chr21_GL383578v2_alt 51996 39 + 63917 TATAAAAGCACAGAAAGGCCTAAACAAGAAAAGAAATGT s panTro5.chr21 889495 39 + 33445071 TATAAAAGCACAGAAAGGCCTAAACAAGAAAAGAAATGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574130 39 + 46275980 TATAAAAGCACAGAAAGGCCTAAACAAGAAAAGAAATGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486254 39 - 13858734 TATAAAAGCACAGAAAGGCCTAAACAAGAAAAGAAATGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614591 39 + 32716333 TATAAAAGCACAGAAAGGCCTAAACAAGAAAAGAAATGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679187 39 - 185818997 TATAAAAGCATAGAAAGGCCTAAACAAGAAAAGAAATGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487262 39 - 192294377 TATAAAAGCATAGAAAGGCCTAAACAAGAAAAGAAATGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932084 39 + 9440265 TATAAAAGCATAGAAAGGCCTAAACAAGAAAAGAAATGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676359 39 + 21915920 TATAAAAGCATAGAAAGGCCTAAACAAGAAAAGAAATGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313074 39 - 90373283 TATAAAAGCATAGAAAGGCCTAAACAAGAAAAGAAATGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655158 39 + 1337817 TATAAAAGCATAGAAAGGCCTAAACAAGAAAAGAAATGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624385 39 - 3237654 TATAAAAGCACAGAAAGGCCTAAACAAGAAAAGAAATGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161917 39 + 50472720 TAGAAAAGCACAGAAAGACCTAAACAAGAAAAGAAGAAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2501970 39 + 13128814 TAGAAAAGCACAGAAAAGCCTAAACAAGAAAAGAAGAAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039531 31 - 14377064 --------CACAGAAAAGCCTAAACAAGAAAAGAAGAAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087187 39 + 9889416 TAGAAAAGCACTGAAAGGCCTAAACAAGAAAAGAAGAAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18344601 32 - 38779656 -----AAGCA--AAATTGACTAAATAAGAAAAGAAATAT i otoGar3.GL873528 C 0 I 15 s dasNov3.JH568778 658433 29 - 6883506 ----------TGGACAAGTCTAGAAAAGAGGAGAAATAT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75834935 953 + 98207768 I e micMur3.chr31 16857742 47 + 47401472 I e canFam3.chr31 11455619 1063 + 39895921 I a score=17100.000000 s hg38.chr21_GL383578v2_alt 52035 1 + 63917 C s panTro5.chr21 889534 1 + 33445071 C i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574169 1 + 46275980 C i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486293 1 - 13858734 C i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614630 1 + 32716333 C i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679226 1 - 185818997 C i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487301 1 - 192294377 C i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932123 1 + 9440265 C i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676398 1 + 21915920 C i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313113 1 - 90373283 C i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655197 1 + 1337817 C i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624424 1 - 3237654 C i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161956 1 + 50472720 C i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502009 1 + 13128814 C i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039562 1 - 14377064 C i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087226 1 + 9889416 C i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857789 1 + 47401472 C i micMur3.chr31 I 47 C 0 s otoGar3.GL873528 18344648 1 - 38779656 C i otoGar3.GL873528 I 15 C 0 s dasNov3.JH568778 658462 1 - 6883506 C i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75834935 953 + 98207768 I e canFam3.chr31 11455619 1063 + 39895921 I a score=695438.000000 s hg38.chr21_GL383578v2_alt 52036 54 + 63917 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTATAGGTTCTTCCCTATATAT s panTro5.chr21 889535 54 + 33445071 TAGAGAACCAT-------TATTAATATTTTACTATTTCTGTAAAGGTTCTTCCCTATATAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574170 54 + 46275980 TACAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCCCTATATAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486294 54 - 13858734 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCCCTATATAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614631 54 + 32716333 TAGCGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCCCTATATAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679227 54 - 185818997 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCTCTCTATAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487302 54 - 192294377 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCTCTCTCTAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932124 54 + 9440265 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCTCTCTCTAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676399 54 + 21915920 TAGAGAACCAT-------TGTTAATATTTTTCTATTTCTGTACAGGTTCTTCTCTCTCTAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313114 54 - 90373283 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCTCTCTCTAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655198 54 + 1337817 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCTCTCTATAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624425 54 - 3237654 TAGAGAACCAT-------TATTAATATTTTTCTATTTCTGTACAGGTTCTTCTTTCTATAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19161957 54 + 50472720 TAGAGAGCCAT-------TATTAATATTTTTCTATTTCCATATAAATTCTTCCCTATATAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502010 54 + 13128814 TAGAGAGCCAT-------GATTAATATTTTTATATTTCTATATGGGTTCTTCCCTCTATAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039563 54 - 14377064 TAGAGAGCCAT-------TATTAATATTTTTATATTTCTATATAGGTTCTTCCCTATATAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087227 54 + 9889416 TAGAGAGCCAT-------TATTAATATTTTTCTATTTCTATATAGGTTCTTCCCTATAAAT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857790 54 + 47401472 TAGAAAACCAC-------TTTTAATATTTTTCTATTTCTGGGTAGGTTCTTCCCTGtatat i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18344649 54 - 38779656 TGGAAAACTGC-------TATTAACAATTTCCTGCTTCTGTGTTGGGTCTTCCCTGTATAT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75835888 54 + 98207768 TAGGAAGCCAT-------TGTTAATAACTCTATGTTCCCATGCAGGTTGTCCCTACTACGT i mm10.chr16 I 953 C 0 s dasNov3.JH568778 658463 61 - 6883506 TGTAATCCCATACCCTACTATTGGCATTTTTCTATTTCTGTGTAGGTTCTTTtttttaaat i dasNov3.JH568778 C 0 I 488 e canFam3.chr31 11455619 1063 + 39895921 I a score=183998.000000 s hg38.chr21_GL383578v2_alt 52090 17 + 63917 ACATACATA----------TAGTGTGT s panTro5.chr21 889589 17 + 33445071 ACATACATA----------TAGTGTGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574224 17 + 46275980 ACATACATA----------TAGTGTGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486348 17 - 13858734 ACATACATA----------TAGTGTGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614685 17 + 32716333 ACATATATA----------CAGTGTGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679281 17 - 185818997 ATATACATA----------TAGTGCAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487356 17 - 192294377 ATATACATA----------TAGTGCGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932178 17 + 9440265 ATATACATA----------TAGTGTGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676453 17 + 21915920 ATATACATA----------TAGTGCAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313168 17 - 90373283 ATATACATA----------TAGTGTGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655252 17 + 1337817 ATATTCATA----------TAGTGCGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624479 17 - 3237654 ATATACATA----------TAGTGCGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162011 17 + 50472720 GCATATATA----------CAGTATGT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502064 17 + 13128814 GCATATACA----------TAGTGTGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039617 17 - 14377064 GAATATACA----------TAGTGTGT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087281 17 + 9889416 GCATATACA----------CAGTGTGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857844 16 + 47401472 gtgtgcata----------tagtgta- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18344703 17 - 38779656 GCAAGTATA----------TAGTGTGT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75835942 27 + 98207768 GCACACATATATACAGCTTTAGCGTGT i mm10.chr16 C 0 I 215 s dasNov3.JH568778 659012 17 - 6883506 acatacata----------cagcatat i dasNov3.JH568778 I 488 C 0 e canFam3.chr31 11455619 1063 + 39895921 I a score=217035.000000 s hg38.chr21_GL383578v2_alt 52107 19 + 63917 ACTTGGGTGCCTGTATTTC s panTro5.chr21 889606 19 + 33445071 ACTTGGGTGCCTGTATTTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574241 19 + 46275980 ACTTGGGTGCCTGTATTTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486365 19 - 13858734 ACTTGGGTGCCTGTATTTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614702 19 + 32716333 ACTTGGGTGTCTGTATTTC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679298 19 - 185818997 ACTTGGGTGTCTGTATTTC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487373 19 - 192294377 ACTTGGGTGTCTGTATTTC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932195 19 + 9440265 ACTTGGGTGTCTGTATTTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676470 19 + 21915920 ACTTGGGTGTCTGTATTTC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313185 19 - 90373283 ACTTGGGTGTCTGTATTTC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655269 19 + 1337817 ACTTGGGTGTCTGTATTTC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624496 19 - 3237654 ACTTGGGTGTCTGTATTTC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162028 17 + 50472720 ACTTGGGTGTC--TATTTC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502081 19 + 13128814 ACTTGGGTGTCCGTATTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039634 19 - 14377064 ACTTGGGTGTCTGTATTTC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087298 19 + 9889416 ACTTGGGTGTCTGTATTTC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857860 14 + 47401472 ---tatgtg--tgtatttc i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18344720 17 - 38779656 GCTTGTGTG--TGTGTTTc i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 659029 15 - 6883506 ----atgtttgtgcatttt i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75835969 215 + 98207768 I e canFam3.chr31 11455619 1063 + 39895921 I a score=213303.000000 s hg38.chr21_GL383578v2_alt 52126 22 + 63917 ATATATATGC-----ACACACATAG--AT- s panTro5.chr21 889625 22 + 33445071 ATATATATGC-----ACACACATAG--AT- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574260 22 + 46275980 ATATATATGC-----ACACACATAG--AT- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486384 22 - 13858734 ATATATATGC-----AAACACATAG--AT- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614721 22 + 32716333 ATATATACGC-----ACACACACAG--AT- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679317 24 - 185818997 ATATATATGc-----acacacacagacac- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487392 24 - 192294377 ATATATATGc-----acacacacagacac- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932214 24 + 9440265 ATATATATGc-----acacacacagacac- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676489 24 + 21915920 ATATATATGc-----acacacacagacac- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313204 22 - 90373283 ATATATATAC-----ACACACATAG--AC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655288 24 + 1337817 ATATATATGc-----acacacacagacac- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624515 22 - 3237654 ATATATATGC-----ACACACACAG--AC- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162045 22 + 50472720 ATATGTATGC-----CCACATACAG--AT- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502100 22 + 13128814 ATATGTATGC-----CCACATACAG--AT- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039653 22 - 14377064 ATATGTATGC-----CCACATACAG--AT- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087317 22 + 9889416 ATATGTATGC-----CCACATACAG--AT- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857874 22 + 47401472 atatatatgc-----acatacatac--at- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18344737 22 - 38779656 atacatacgt-----acatacatat--ta- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11456682 25 + 39895921 atatatatgtttttaatgtatatat----- i canFam3.chr31 I 1063 C 0 s dasNov3.JH568778 659044 23 - 6883506 atacatatgt-----atatatgtat--gtt i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75835969 215 + 98207768 I a score=31153.000000 s hg38.chr21_GL383578v2_alt 52148 2 + 63917 AT s panTro5.chr21 889647 2 + 33445071 AT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574282 2 + 46275980 AT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486406 2 - 13858734 AT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614743 2 + 32716333 AT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679341 2 - 185818997 at i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487416 2 - 192294377 at i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932238 2 + 9440265 at i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676513 2 + 21915920 at i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313226 2 - 90373283 AT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655312 2 + 1337817 at i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624537 2 - 3237654 GT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162067 2 + 50472720 AT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502122 2 + 13128814 AT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7039675 2 - 14377064 AT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087339 2 + 9889416 AT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16857896 2 + 47401472 at i micMur3.chr31 C 0 I 626 s otoGar3.GL873528 18344759 2 - 38779656 at i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75836184 2 + 98207768 ac i mm10.chr16 I 215 C 0 s canFam3.chr31 11456707 2 + 39895921 at i canFam3.chr31 C 0 I 2 s dasNov3.JH568778 659067 2 - 6883506 gt i dasNov3.JH568778 C 0 C 0 a score=194535.000000 s hg38.chr21_GL383578v2_alt 52150 30 + 63917 ACACAGAAACACAGG---------------------------------------------------------------------------------------ATATGTA--TGTGTGTA s panTro5.chr21 889649 30 + 33445071 ACACAGAAACACAGG---------------------------------------------------------------------------------------ATATGTA--TGTGTGTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574284 30 + 46275980 ACACAGAAACACAGG---------------------------------------------------------------------------------------ATATGTA--TGTGTGTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486408 30 - 13858734 ACACAGAAACGCAGG---------------------------------------------------------------------------------------ATATGTA--TGTGTGTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614745 32 + 32716333 ACACAGAAATACAGG---------------------------------------------------------------------------------------ATATGTATGTGTGTGTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679343 32 - 185818997 acacagaaatacaGG---------------------------------------------------------------------------------------ATATGTATGTGTGTGTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487418 32 - 192294377 acacagaaatacaGG---------------------------------------------------------------------------------------ATATGTATGTGTGTGTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932240 32 + 9440265 acacagaaatacaGG---------------------------------------------------------------------------------------ATATGTATGTGTGTGTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676515 32 + 21915920 acacagaaatacaGG---------------------------------------------------------------------------------------ATCTGTATGTGTCTGTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313228 32 - 90373283 ACACAGAAATACAGG---------------------------------------------------------------------------------------ATGTGTATGTGTGTGTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655314 32 + 1337817 acacagaaatacaGG---------------------------------------------------------------------------------------ATATGTATGTGTGTGTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624539 32 - 3237654 ACACAGAAATACAGG---------------------------------------------------------------------------------------ATATGTATGTGTGTGTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162069 32 + 50472720 ACATAGAAATACAGG---------------------------------------------------------------------------------------gtgtgtgtgtgtgtgtg i calJac3.chr21 C 0 I 6 s saiBol1.JH378168 2502124 32 + 13128814 ACATAGAAATACAGG---------------------------------------------------------------------------------------gtgtgtgtgtgtgtgtg i saiBol1.JH378168 C 0 I 20 s cebCap1.NW_016107322v1 7039677 32 - 14377064 AAATAGAAATACAGG---------------------------------------------------------------------------------------Atgtgtgtgtgtgtgtg i cebCap1.NW_016107322v1 C 0 I 18 s aotNan1.NW_018487195v1 6087341 32 + 9889416 ACATAGAACTACAGG---------------------------------------------------------------------------------------gtgtgtgtgtgtgtgtg i aotNan1.NW_018487195v1 C 0 I 4 s otoGar3.GL873528 18344761 19 - 38779656 --acacacatattgt---------------------------------------------------------------------------------------ata-gta---------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75836186 119 + 98207768 actcaaaaccacaagtaaggtttcttctgaataaatatcacttttacacaattgtatagttgaaaaaaatgttaggtagagccatcaatagtcagtgatcctatgTGCAGGTATGTATA i mm10.chr16 C 0 I 51 s canFam3.chr31 11456711 13 + 39895921 ccatatacacaca---------------------------------------------------------------------------------------------------------- i canFam3.chr31 I 2 C 0 s dasNov3.JH568778 659069 12 - 6883506 gcacagacataa----------------------------------------------------------------------------------------------------------- i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16857898 626 + 47401472 I a score=4619095.000000 s hg38.chr21_GL383578v2_alt 52180 351 + 63917 TATATGCATTCCTACAGCTATATATTCTGTTTTACAATTCTTAAAAATTA--ACAATAAAAGATTAGTAAATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAATCAACTATTCCTTTACTGCACATCTTATGttattaagcatttactatatgttgcttctgtactcagtg---ctgtggtcacaatttctgccctagagagccatcaat-----ttaacagaaagattaaacagacaa-ttttgcaagaatgataaattctgtagtagaagaatgcccaggatgatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttttcagaaaaggttca s panTro5.chr21 889679 351 + 33445071 TATATGCATTCCTACAGCTATATATTCTGTTTTACAATTCTTAAAAATTA--ACAATAAAAGATTAGTATATTCTAGTGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAATCAACTATTCCTTTACTGCTCATCTTAGGttattaagcatttactatatgttgcttctgtactcagtg---ctgtggtcacaatttctgccctagacagccatcact-----ttaacagaaagattaaacagacaa-ttttgcaagaatgataaattctgtagtagaagaatgcccaggatgatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttttcagaaaaggttca i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574314 351 + 46275980 TATATGCATTCCTACAGCTATATATTCTGTTTTACAATTCTTAAAAATTA--ACAATAAAAGATTAGTAAATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAATCAACTATTCCTTTACTGCACATCTTACGttattaagcatttactatatgttgcttctgtactcagtg---ctgtggtcacaatttctgccctagagagccatcaat-----ttaacagaaagattaaacagacaa-ttttgcaagaatgataaattctgtagtagaagaatgcccaggatgatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttttcagaaaaggttca i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486438 351 - 13858734 TATATGCATTCCTACAGCTATATATTCTGTTTTACAATTCTTAAAAATTA--ACAATGAAAGATTAGTATATTCTAATGCTA--------TAATA------TACAAT-----CTG-GAAAAA---AGAAAAATCAACTATTCCTTTACTGCACATCTTAGGttattaagcatttactatatgttgcttctgtactcagtg---ctgtggtcacaatttctgccctagagagccatcaat-----ttaacagaaagattaaacagacaa-ttttgcaagaatgataaattctgtagtagaagaatgcccaggatgatatgggaacacacagcagggaattta------attcatgctggaagtaaccaggatg-ttttttcagaaaaggttca i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1614777 346 + 32716333 TATATGCATTCCTACAACTACATAT--TGTTTTATAATTCTTAAAAATTA--ACAATAAAATATTAGTGTATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAA------AAAACCCAACTATTCCTTTACTGCACATCTTAGGttattaagcatttactatatattgcttctgtactcagtg---ctgtggtcacaatttctgccctagagagccatcaat-----ttcacagaaagatgaaacagacaa-ttttgcaagaatgataaattctgtagtagaagaatgcccaggatgatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttatcagaaaaggttca i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679375 351 - 185818997 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATTA--ACAATAAAATATTAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAACCAACTATTCCTTTACTGCATATTTTAGGttattaagcatttactatatgttgcctctgtactcagtg---ctgtggtcagaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagattgcctaggataatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttatcggaaaaggttca i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487450 351 - 192294377 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATTA--ACAATGAAATATTAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAACCAACTATTCCTTTACTGCATATTTTAGGttattaagcatttactatatgttgcctctgtactcagtg---ctgtggtcagaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagaatgcctaggataatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttatcagaaaaggttca i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932272 351 + 9440265 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATTA--ACAATAAAATATTAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAACCAACTATTCCTTTACTGCATATTTTAGGttattaagcatttactatatgttgcctctgtactcagtg---ctgtggtcagaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagaatgcctatgataatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttatcagaaaaggttca i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676547 351 + 21915920 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATTA--ACAATAAAATATTAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAACCAACTATTCCTTTACTGCATATTTTAGGTTATTaagcatttactgtatgttgcctctgtactcagtg---ctgtggtcagaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagaatgcctaggataatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttatcagaaaaggttca i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313260 351 - 90373283 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATTA--ACAATAAAATATTAGTATATTCTAATGCTA--------CAATA------GACAAT-----CTG-GAAAAA---AGAAAAACCAACTATTCCTTTACTGCATATTTTAGGttattaagcatttactatatgttgcctctgtactcagtg---ctgtggtcagaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagaatgataaattctgtagtagaagaatgcccgggataatatgggaacacacagcagggaattta------attcatactggaagtaaccaggttg-ttttatcagaaaaggttca i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655346 351 + 1337817 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATGA--ACAATAAAATATTAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AGAAAAATCAACTATTCCTTTACTGCATATTTTAGGttattaagcatttactatatgttgcctctgtactcagtg---ctgtggtcagaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagaatgtctaggataatatgggaacacacagcagggaattta------attcatactggaagtaaccaggatg-ttttatcagaaaaggttca i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624571 352 - 3237654 TATATGCATTCCTGCAACTATGTATTCTGTTTTATAATTCTTAAAAATTA--ACAATAAAATATTAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---ATAAAAACCAACTATTCCTTTACTGCATATTTTAGGttattaagcatttactatatgttgcctctgtactcagtg---ctgtggtcacaatttctgctctagagagcgatcagt-----ttaacagaaagattaaacagacaa-ttttgcaagaatgacaaattctgtagtagaagaatgcccaggataatatgggaacacacagcagggaattta------attcatattgggagtaaccaggatgtttttttcagaaaaggttca i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162107 349 + 50472720 tgtatgCATTTCTGCAAGTATATATTCTGTTTTATAATTCTTAAAAATTA--GCAATAAAAGATGAGTATATTCTAATGCTA--------CAATA------AACAAT-----CTG-GAAAAA---AACCAAATCAACTGTTCCTTTACTGTATATTTTAGtttattaagcatttactatacgttgcttctttactcagtg---ctgaggttacagtttcttccctagagagctatcagt-----ttaacagagagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagaatgcccaggat-atacaagaacacacagcagggaattta------attcatactggaaataaccaggat--ttttttcagaaaaggttca i calJac3.chr21 I 6 C 0 s saiBol1.JH378168 2502176 348 + 13128814 tgtatgCATTTCTG-AAGTATATATTCTGTTTTATAATTCTTAAAAATTA--GCAATAAAAGATGAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTA-GAAAAA---AA-CAAATCAACTGTTCCTTTACTGTATATTTTAGtttattaagcatttaatatatgttgcttctctactcagtg---ctgaggttacaatttctgccctagagagccatcagc-----ttaacagagagattaaacagacag-ttttgcaagagtgataaattctgtagcagaagaatggccaggat-gtatgagaacacacagcagggaattta------attcatactggaaataaccaggatg-ttttttcagaaaaggttga i saiBol1.JH378168 I 20 C 0 s cebCap1.NW_016107322v1 7039727 334 - 14377064 tgtATGCATTTCTG-CAATATATATTCTGTTTTATAATTCTTAAAAATTA--GCAATAAAAGATGAGTATATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AA-CAAATCAACTGTTCCTTTACTGTATATTTTAGtttattaagcatttactatatgttgtttctctactcagtg---ctgaggttacaatttctgccctagagagccatcagt-----ttaacagagagattaaacagacaa-ttttgcaagagtgataatttctgtagtagaagaatgcccaggat-atatgagaacacacagcagggaattta------attcatactggaaatcaccaggatg-ttttt-------------- i cebCap1.NW_016107322v1 I 18 C 0 s aotNan1.NW_018487195v1 6087377 346 + 9889416 tgCATGCATTTCTGCAAGTATATATTCTGTTTTATAATTCTTAAAAATTA--GCAATAAAAGGTGAGTGTATTCTAATGCTA--------CAATA------TACAAT-----CTG-GAAAAA---AA-CAAATCAACTGTTCCTTTACTGTATATTTTAGtttattaagcatttactatatgttgcttctctactcaggg---ctgaggttacaatttctgccctagagagccatcagt-----ttaacagagagattaaacagacaa-ttttgcaagagtgataaattctgtagtagaagaatgcccaggat-at---agaacacacagcagggaattta------atttatactggaaataaccaggatg-ttttttcagaaaaggttca i aotNan1.NW_018487195v1 I 4 C 0 s micMur3.chr31 16858524 366 + 47401472 TATATGCATTCTTCCAGCTATATATTGTGTTTTATAATTTTAAAAAATTA--ACAGTAAAGAATAAATATATTCCAATGCTG--------TTATATATCATTACAAT-----CAG-AAAAAA---AAATGAGCACACCATTTCTCTATCGCATATTTTGGGTGATTAAGCATCTACTGCATGTTGATTCTCTACTCAGTGTACCTCAGGTTacaatttctgtcccagagagccatcagt-----ttaaaagagagagttaacagacaa-tttcataagagtgataagttctgtggtagactaatatccaggattatgtgggatcacacagcaagaaatttattaataattcatactgagattaaccaggatg-tgttttctgaaaaaaatca i micMur3.chr31 I 626 I 78 s otoGar3.GL873528 18344780 345 - 38779656 tatatgcattcttacaactatatacTCTGTTTTGtaatttt-aaaaatta--ataatatttGATGAGTCTATTTGAATGCTG--------TGATA------CACAAC-----CTGAAAAAAA---AAATAAGCCCACCATTTCTTTATTGCACATTTTGAGGTATTAAGCATATAGTAT-TATTGATTTTCTACCCAATG---CTGAGGTTaccatttctgccccagagaaccatcagt-----tca----attgagttaacaggcag-ttttgcaagcatgataagttctatggtggaagaatattcaagatgatatgggaacatacagcaggaaattta--agtcatgaat-----gagtaaccaggatg-tcttttcggaaaatgttag i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75836356 326 + 98207768 TATACACATTCACACAACTGTATAT--TGTTCTAAA-----TAGAAATTATGATGACATATAGTAATCATATCATAATACAG--------CTTTA------TCAAAC-----CTG-AAAAAAATCAACAAAGCTGACCATT-CGCTGTTAGACAGTTTAGATTATTAATTATGTATTAAATGCTGGCTCCTAACTCGGTG---CAGAGGTTATAATTCCTGCCCTAGAGAGCCATCAGT-----TTC----AAGGAGTAACCACATAGCTTTTGCAAG--TGGCAGATTCTT-------GTCATGTC----ACCACATGAGAAAACATGGCAGAAAA-TGA------ATCTGCACTGAAGGCATCCAAA----GTCTAACAGCAGAGGCA-- i mm10.chr16 I 51 C 0 s canFam3.chr31 11456724 359 + 39895921 tatgtatatttatacaGCCATGCattttattttataattttaataaGTTG--ATAATAAATAGTAGATCTATTCCAAATCTATTCCAAATTGTTA------TACAATCCTCCCTA-AAAAGC---AAACAAGCTAACCATTTCTCCATTGTATATTTTAGGTTATTACTTATTTACTATATGTTGATTCTCTACTCAGTG---CTGaggatacaatttttgccctggagagcaatcaga-----ttaatcg--tgtataaacagacca-tttcatgagagtgataagctttg---taggagaattcccagaattatatgggagcatgtatcagggaatttg------attcacaatgaggatatctaggtta-ttccttcagaaaaggttaa i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 659081 345 - 6883506 tatacacattcatacaactatacatTCTGtttaataatt-taaaaaatca--ataata-atGGTGAGTATATTCCAGCGCTA--------TTATA------TACAGT-----ATG-AAAAAA----------CAAACTATTTCTCCATTGTATATTTTAGGttattaaacatttattatatgttggttctcctttcaatg---ctgaggatacaatttctatgccagagagccatcaattgtaatgaagagacagagtgaaaagacaa-ttttgtaagcatgaaaaattctattataaaagaatatcaaaggtgatgtgagaaca-acagaagagaagttc------gttcacacttgga-tatcaaagatg-tcttttcaaaatagattaa i dasNov3.JH568778 C 0 C 0 a score=818220.000000 s hg38.chr21_GL383578v2_alt 52531 78 + 63917 catctgagctacgtatttaagggtcagtatgagtttcggtga---------------------------agg-aggtgggt---ctagatatggggag-gtaggtggcag s panTro5.chr21 890030 78 + 33445071 catctgagctacgtatttaagggtcagtatgagtttcggtga---------------------------agg-aggtgggt---ctagatatggggag-gtaggtggcag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574665 78 + 46275980 catctgagctacatatttaagggtcagtatgagtttcggtga---------------------------agg-aggtgggt---ctagatatggggag-gtaggtggcag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486789 78 - 13858734 catctgagctatgtatttaagggtcagtatgagttttggtga---------------------------agg-aggtgggt---ctagatatggggag-gtaggtggcag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615123 78 + 32716333 catctgagctaagtattgaaggatcagtatgagtttcagtga---------------------------agg-aggtgggt---ctagatatggggag-gtaggtggcgg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679726 78 - 185818997 catctgagctaagtactgaagggtcagtatgggtttcagtga---------------------------agg-tggtgggt---ctagacatggggag-gtaggtggtgg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487801 78 - 192294377 catctgagctaagtactgaagggtcagtatgggtttcagtga---------------------------agg-tggtgggt---ctagacatggggag-gtaggtggtgg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932623 105 + 9440265 catctgagctaagtactgaagggtcagtatgggtttcagtgaaggtggtgggtctagacatggggaggtagg-tggtgggt---ctagacatggggag-gtaggtggtgg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676898 78 + 21915920 catctgagctaagtactgaagggtcagtatgggtttcagtga---------------------------agg-tggtgggt---ctagacatggggag-gtaggtggtgg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313611 78 - 90373283 catctgagctaagtactgagggatcagtatgggtttcagtga---------------------------agg-tggtgggt---ctagacatggggag-gtaggtggtgg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655697 78 + 1337817 catctgagctaagtactgaagggtcagtatgggtttcagtga---------------------------agg-tggtgggt---ctagacatggggag-gtagatggtgg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 624923 78 - 3237654 catctgagctaagtactgaaggatcagtatgagtttcagtga---------------------------agg-tggtgggt---ctagatatggggag-gtaggtggtgg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162456 78 + 50472720 catctgagctaagtattgaagagtgagtatgagtttcagtga---------------------------agg-agatgggt---ctagatatggggag-gtgggtggtgg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502524 78 + 13128814 catctgagttaagtattgaagagcgagtacgagtttcagtga---------------------------agg-aggtgggt---ctagatatgggaag-gtgggtggtgg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040061 76 - 14377064 --tctgagctaagtattgaagagtgagtatgagtttcagtga---------------------------cgg-aggtgggg---ttagatatgcggag-gtgggtggtgg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087723 75 + 9889416 catctgagctaagtatt---gagtgagtatgagtttcagtga---------------------------agg-aggtgggt---ctagataaggggag-gtgggtggtgg i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18345125 77 - 38779656 tgtcagggctaagtctttagggctgaggaagagtttcagtga---------------------------atg-gagtgggt---ctttatatggggag-g-gggttgtga i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75836682 67 + 98207768 AGTCTGAACAGC---------------TAAGAGCTTCAGCGA---------------------------AGATTGGAGAGTATCCTAGAGATAAAAAG-AAGACTTTCTG i mm10.chr16 C 0 C 0 s canFam3.chr31 11457083 64 + 39895921 tgtctgagctaaatcttgaagactgag-------------ga---------------------------aga---gtggtc---tgagatatggggggtgggggTGGGTG i canFam3.chr31 C 0 I 3 s dasNov3.JH568778 659426 69 - 6883506 tatctgaacta--tcttgaaggctaag----agtttcagtaa---------------------------aag-gggtaggt---gtagatataggggt-g-gggtggc-- i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16858890 78 + 47401472 I a score=8143081.000000 s hg38.chr21_GL383578v2_alt 52609 604 + 63917 atcagcttgaaagttacgagagtaga-gcacattagaaaaagtgaaggcagtctcccatcaccacaggatag-------ggtaacgagagaggtgtggtgaagtgatgaatgataaggctagagaattaagtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactgggcagtggtgtaatcagatttgcaatttcgaatgctctactgagcagtctgg-tgagtgcattggaaaagatg----------aagtatagagttatggagactagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atacatacata---------------------tactgaagaagaggcagtggggaggaaggggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctggga--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatggatgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagat--------tgggtttgagattcatgtggaacattcaaAATAAGTCATT s panTro5.chr21 890108 604 + 33445071 atcagcttgaaagttatgagagtaga-gcacattagaaaaagtgaaggcagtctcccatcaccacaggatag-------ggtaacgagagaggtgtggtgaagtgatgaatgataaggctagagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaacg-----ttttaaactggggagtggtgtaatcagatttgcaatttcgaatgctctactgagcagtctgg-tgagtgcattggaaaagatg----------aagtatagagttatggagagtagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------gtgaaaagagat----------aa-----------------------------------------------atacatacata---------------------tactgaagaagaggcagtggggaggaaggggaaggggtaaaactgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgatagtaatat-tg-------ctggga--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaaaacaatgg-----------------------------taatatttggatttataatttgaaatctaggtggatgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagat--------tgggtttgagattcatgtggaacattcaaaataagtcatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14574743 604 + 46275980 atcagcttgaaagttatgagagtaga-gcacattagaaagagtgaaggcagtctcccatcaccacaggatag-------ggttaccagagaggcgtggtgaagtgatgaatgataaggctagagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactgggcagtggtgtaatcagatttgcaatttcgaatgctctactgagcagtctgg-tgagtgcattggaaaagatg----------aagtatagagttatggagactagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atacatacata---------------------tactgaagatgaggcagtggggaggaaggggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctggga--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatggatgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagat--------tgggtttgagattcatgtggaacattcaaAATAAGTCATT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 486867 617 - 13858734 atcagcttgaaagttatgagagtaga-gcacattagaaaaagtgaaggcagtctcccatcaccacaggatag-------ggtaacgagagaggtgtggtgaagtgatgagtgataaggctagagaattaggtaggaacggataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagtggtgtaatcagatttgcaatttcgaatgctctactgagcagtctgg-tgagtgcattggaaaagatg----------aagtatagagttatggagagtagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atacatacata---------------------tactgaagaagaggcagtggggaggaaggggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctggga--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatggatgattgagcact-gtagagaataagattttagaaagaagatgagtaaag--aag---at---gagtttcattttgaacagat--------tgggtttgagattcatgtggaacattcaaaataagtcatt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615201 600 + 32716333 atcagcttgaaagttatgagagtaaa-acacattagaaaaagtgaaagcagtctcctatcaccacgggatag-------ggtaacaagagaggcgtggtaaagtgatgaatgataaggctggagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcactcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagtggtgtaatcagatttgcaatttcgaacgctctactgagcagtgtgg-tgagtgcattggaaaagatg----------aagtatagagttatggagagtagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atacatacata---------------------tactgaagaagaggcagtcgggaggaaggggaaggggtaaacctgatggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacaataatat-tg-------ctggga--------------------c----tgag----tg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatgggtgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagat--------tgagtttgagattcatgtggaatattcaaaataagtcatt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152679804 604 - 185818997 atcagcttgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaacgagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagtggtgtaatcagatttgcaatttccaatgctctactgagcagtctgg-tgagtgcattggaagagatg----------aagtatagagttataaagagtagtgaga-----at--tgatcatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atatatacgta---------------------tactgaagaagaggcagtggggaggaacaggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctgggg--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatgggtgattgagcact-gtagagaataagattttag-------------aaaa--aag---at---gagtttcattttgaacagac--------tgggtttgagattcatgtggaacattcaaaataagtcatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159487879 604 - 192294377 atcagcttgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaacgagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggaacagatAATT--AAAAATCAGT---GTAAGTGTTTGAATTTCATTCAG--AAAGTACTTGAGAGCTAAGGAAACA-----TTTTAAACTGGGGAGTGGTGTAATCAGATTTGCAATTTCCAATGCTCTACTGAGCAGTCTGG-TGAGTGCATTGGAAGAGATG----------AAGTATAGAGTTATAAAGAGTAGTGAGA-----AT--TGATCATGATTC---------T--------------------------------------------------------------GTGAAAGGAGAT----------AA-----------------------------------------------ATATATACGTA---------------------TACTGAAGAAGAGGCAGTGGGGAGGAACAGGAAGGGGTAAACCTGACGGTTAAG-------------------------------------------------------------------------------------------------------------------------TTTTGACAGTAATAT-TG-------CTGGGG--------------------C----TGAGTGATTG----TGTGTG----AAGTATGAA------------------------------------------GGAGAGGAAAAAGACAATGG-----------------------------TAATATTTGGATTTATAATTTGAAATCTAGATGGGTGATTGAGCACT-GTAGAGAATAAGATTTTAG-------------AAAA--AAG---AT---GAGTTTCATTTTGAACAGGC--------TGGGTTTGAGATTCATGTGGAACATTCAAAATAAGTCATT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5932728 604 + 9440265 atcagcttgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaacgagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagtggtgtaatcagatttgcaatttccaatgctctactgagcagtctgg-tgagtgcattggaagagatg----------aagtatagagttataaagagtagtgaga-----at--tgatcatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atatatacgta---------------------tactgaagaagaggcagtggggaggaagaggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctgggg--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatgggtgattgagcact-gtagagaataagattttag-------------aaaa--aag---at---gagtttcattttgaacagac--------tgggtttgagattcatgtggaacattcaaaataagtcatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5676976 604 + 21915920 atcagcttgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaacgagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagtggtgtaatcagatttgcaatttccaatgctctactgagcagtctgg-tgagtgcattggaagagatg----------aagtatagagttataaagagtagtgaga-----at--tgatcatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atatatacgta---------------------tactgaaaaagaggcagtggggaggaagaggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctgggg--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatgggtgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagac--------tgggtttgagattcatgtggaacattcaaaataagtcatt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12313689 603 - 90373283 atcagcttgcaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaacgagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggagcagatAATT--AAAAATCAGT---GTAAGTGTTTGAATTTCATTCAG--AAAGTACTTGAGAGCTAAGGAAACA-----TTTTACACTGGGGAGTGGTGTAATCAGATTTGCAATTTCCAATGCTCTACTGAGCAGTCT-G-TAAGTGCATTGGAAGAGATG----------AAGTATAGAGTTATAAAGAGTAGTGAGA-----AT--TGATCATGATTC---------T--------------------------------------------------------------GTGAAAGGAGAT----------AA-----------------------------------------------ATATATACATA---------------------TACTGAAGAAGAGGCAGTGGGGAGGAAGAGGAAGGGGTAAACCTGATGGTTAAG-------------------------------------------------------------------------------------------------------------------------TTTTGACAGTAATAT-TG-------CTGGGG--------------------C----TGAGTGATTG----TGTGTG----AAGTATGAA------------------------------------------GGAGAGGAAAAAGACAATGG-----------------------------TAATATTTGGATTTATAATTTGAAATCTAGATGGGTGATTGAGCACT-GTAGAGAATAAGATTTTAG-------------AAAG--AAG---AT---GAGTTTCATTTTGAACAGAT--------TGGGTTTGAGATTCATGTGGAACATTCAAAATAAGTCATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 655775 604 + 1337817 atcagcttgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaacaagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagtggtgtaatcagatttgcaatttccaatgctctactgagcagtctgg-tgagtgcattggaagagatg----------aagtatagagttataaagagtagtgaga-----at--tgatcatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atatatgcgta---------------------tactgaagaagaggcagtggggaggaagaggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctgggg--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttataatttgaaatctagatgggtgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagac--------tgggtttgagattcatgtggaacattcaaaataagtcatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625001 604 - 3237654 atcagcttgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtttcctatcaccacaggatag-------ggtaaggagagaggcgtggtgaagtgatgaatgataaggctggagaattaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaca-----ttttaaactggggagcggtgtaatcagatttgcaatttccagtgctctactgagcagtctgg-tgagtgcattggaagagatg----------aagtatagagttataaagagtagtgaga-----at--tgatcatgattc---------t--------------------------------------------------------------gtgaaaggagat----------aa-----------------------------------------------atatatacata---------------------tactgaagaagagtcagtggggaggaagaggaaggggtaaacctgacggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagtaatat-tg-------ctgggg--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgg-----------------------------taatatttggatttctaatttgaaatctagatgggtgattgagcact-gtagagaataagattttag-------------aaag--aag---at---gagtttcatttcgaacagat--------tgggtttgagattcatgtggaacattcaaaataagtcatt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19162534 599 + 50472720 atcagcctgaaagttaggagagtgacttcacattagaaaaagtgaaaacagtcttccatcaccacaggatag-------ggtaacgagagaggcgtggtgaa---atgaatgaaaaggctggagaattaggtaggaacagatAATT--AAAAATCAGT---GTAAGTGTTTGAATATCATTCAG--AAAGTACTTGAGAGCTAAGGAAAGA-----TTTTAAACTGGGGAGTGGTGTAATCAGATTTGCAATTTTGAATGCTCTACTGAGCAGTCTGG-TGAGTGCATTGGAAGAGATG----------AAGTATAGAGTTGTGGAGTGTAGTGAGA-----AT--TGATCATGATTC---------T--------------------------------------------------------------ATGAAAGGAAAT---------AAA-----------------------------------------------ATACACACATA---------------------TACTGAAGAAGAGGCAGTGGTGATTAAGGGGAAGAGGTAAATTCAGTGGTTAAG-------------------------------------------------------------------------------------------------------------------------TTTTGACAGCAATAT-TG-------CTGGAA--------------------C----TGAGTGATTG----TGTGTG----AAGTATGAA------------------------------------------GGAGAGGAAAAAGACAGTGT-----------------------------TCATATTTGGATTTATAATTTGAAATCTAGA----TAATTGAGCATT-GTAGAGAATAAGATTTTGG-------------AAAG--AAG---AT---GAGTTTCATTTTGAACAGAT--------TGGGTTTGAGATTCATGTGGAACATTCAAAATAAGTCATT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2502602 593 + 13128814 atcagcctgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtctcccatcaccgcaggatag-------ggtaatgagagaggtgtggtgaa---atgaatgataaggctggagaagtaggtaggaacagataatt--aaaaatcagt---gtaagtgtttgaatttcattcag--aaagtacttgagagctaaggaaaga-----ttttaaactggggagtggtgtaatcagatttgcaattttgaatgctctactgagcagtctgc-tgagtgcattggaagagatg----------aagtatagagttatagagtgtagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------at----ggagat----------aa-----------------------------------------------atacacacata---------------------tactgaagaagaggcagtggggattaaggggaagaggtaaatttgatggttaag-------------------------------------------------------------------------------------------------------------------------ttttgacagcaagat-tg-------ctggaa--------------------c----tgagtgattg----tgtgtg----aagtatgaa------------------------------------------ggagagaaaaaagacaatgt-----------------------------tcatatttggatttataatttgaaatgtagg----tgattgagcatt-gtagagaataagattttgg-------------aaag--aag---at---gagtttcattttgaaccgac--------tgggtttgagattcatgtggaacattcagaataagtcatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040137 589 - 14377064 atcagcctgaaagttatgagagtaaa-gcacattagaaaaattgaaagcagtcttccatcaccacaggatag-------ggtaaggagagaggcatggtgaa---atgaatgataaggctagagaattaggtaggaacagataatt--aaaaatcagt---gtaag----tgaatttcattcag--aaatcacttgagagctaaggaaaga-----ttttaaactggggagtggtgtaatcagatttgcaatttcgaatgctctgctgagcagccttg-taagtgcattggaagggatg----------aagtatagagttatggagtgtagtgaga-----at--tgataatgattc---------t--------------------------------------------------------------atgaaaggagat----------aa-----------------------------------------------atacacacata---------------------tactgaagaagaggcagtggggattaaaagaaataggtaaatttgatggttagg-------------------------------------------------------------------------------------------------------------------------ttttgacagcaatat-tg-------ctggaa--------------------c----tgagtgat--------tgtg----aagtatgaa------------------------------------------ggagaggaaaaagacaatgt-----------------------------tcatatttggatttataatttgaaatctaga----tgattgagcatt-gtagagaataagattttag-------------aaag--aag---at---gagtttcattttgaacagac--------tgggtttgagattcatatggaacattcaaAGTAAGTCATT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6087798 594 + 9889416 atcagcccgaaagttatgagagtaaa-gcacattagaaaaagtgaaagcagtctcccatcaccacaggatag-------ggtaacgagagaggcgtggtgaa---atgaatgataaggctggagaattaggtaggaacagatAATT--AAAAATCAGT---GTAAGTGTTTGAATTTCATTCAG--AAAGTATTTGAGAGCTAAGGAAAGA-----TTTTAAACTGAGGAGTGGTGTAATCAGATTTGCAATTTTGAATGCTCTACTGAGCAGTCTGG-TGAGTGCATTGGAAGAGATG----------AAGTATAGAGTTATGGAGTGTAGTGAGA-----AT--TGATAATGATTC---------T--------------------------------------------------------------ATGAAAGGAGGT----------AA-----------------------------------------------ATACACACATA---------------------TACT---GAAGAGGCAGTTGGGATCAAGGGGAAGAGGTAAATTTGATGGTTAAG-------------------------------------------------------------------------------------------------------------------------TTTTGACAGCTGTAT-TG-------CTGGAA--------------------C----TGAGTGATTG----TGTGTG----AGGTATGAA------------------------------------------GGAGAGGAAAAAGACAATGT-----------------------------TCATATTTGGATTTATAATTTGAAATCTAGA----TGATTGAGCATT-GTAGAGAATAAGATTTTGA-------------AAAG--AAG---AT---GAGTTTCATTTTGAAAAGAT--------TGGGTTTGAGATTCATGTGGAACATTCAAAATAAGTCATT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16858968 607 + 47401472 accagttcaaaaggtagaagaataat-gcacattagaaaatgtgaaagcggtctcccatcaccagaggatag-------ggtaatgagggaggcgtggtggagtgatgaatgataatgc--------taggtagaaacagataatt--aaaaatcagt---ctaagtgtttgaatttcattcag--aaagtacttgagaaccatggaagga-----ttttaaactgga-agtggtgtaatcagatttgcaatttaaaatgctctactgagtaatctag-tgaatggattggaaaagatc----------agggatggagttatggagagtagttggaatgccat--tgataatgattc---------t--------------------------------------------------------------gtgggaggagat----------ga-----------------------------------------------atacacatatg---------------------tactgaagcaaaagtagtgggaatgagggagagagggtcaacttgagagctatg-------------------------------------------------------------------------------------------------------------------------ttttggcactgacat-tg-------gtggga--------------------c----tgagtgactg----tgtgtgaagtatgtatgag------------------------------------------gaagaggaaagagtcaaggg-----------------------------tcatttttggatttataatttggagtgtagatggatggtggagcact-gtagagattaagattttgg-------------aaag--aagatcat---gaatttcatttcaaacagac--------tgggtttgagattcatgtggtacattcaCAGTAAGTCATT i micMur3.chr31 I 78 I 15 s otoGar3.GL873528 18345202 598 - 38779656 atcagctcaaaaggtaggagagaaAA-TCACATTAGAAAATGTGAACACAG-ATCCCATCACCAGAgggtag-------ggtaacgagggaggcgtggtagagtgatgaaccatgatgc--------tagataagaacagataatt--aaaaatcagt---ctaagtgtttcattttcattcag--aaagtacttgagaaccagggaaaga-----tttaaactaggg-agtggtgtaatcagatttgcaatttagaatgctctactgaacaatgtag-tgaatggattggaagtgatc----------agggatggagttgtgaagagtagttaagatgccat--tgataaggattc---------t--------------------------------------------------------------gtggaaggagaa----------ga-----------------------------------------------atatatacatg---------------------tgctgaagcaaaggcagtgggaacgaaggggaggggatcaacttgagagctgtg--------------------------------------------------------------------------------------------------------------------------tttggtactaatac-tg-------acagga--------------------ct---tgagtgactg----ta--------aagtatgag------------------------------------------ggagtgaaaagaggtgaggt-----------------------------tcatttttggatttataatttggagtctagatagatgatggagcatt-atagagataaagattttgg-------------aaag--aagatgat---gaatttcacgtgaaacaggc--------taagtttgagattcatatagtgcattcaaaataagtcact i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75836749 623 + 98207768 ATCAGTTTAAACGTGATGTGCCCAGA-TCCCACTGGAAAATCTGAAAGCTGTCTCCCTACAGTAGAGGACAG-------GGTAATGAGGCAGGAGTGGTAAATTCGTGGA--------CTGGAGAATTAGGTAGAAATGGACCGTT--TAAGGCAGGTTAAATGAATGCTTGGATCTCATCCAG--AAAGTACATAAGAGGCAAGGAAGGAAGGGTTCTTAAATTGGACTGTTGTATTATCACAGTGGGATTGGAGAATCTCTCTCTGAACAG-------------AGTAGAAAAGATA----------GAGTGTGGAATTAGAACGATTTTTATGG-TGCTAT--TGATATTGatttatatatatat--------------------------------------------------------------atacatatatat----------aattagtatacacacacacacacacacacacatatatgtatatgtgtgtgtatatatata---------------------tactgatgtagag------gGGGAAAAGGGAAGAGAATACATGTATTGCCTATA-------------------------------------------------------------------------------------------------------------------------TTCCATCACTGATATCTG-------TTGTAA--------------------CTGGATGAGTGAATG----CATGTA----AAATATGAG------------------------------------------GGAGAAGAAAG----------------------------------------------------------TTGATTCTGGATGGATGATGGTATAAC-CTAG------TTCTTTTGG-------------GTAGGTAAG---ATTG-GAGATTCATGTGTAATATATTCAATATATGGGGTTGACATTTATGTGACATAGTAAAA-----TCACT i mm10.chr16 C 0 C 0 s canFam3.chr31 11457150 940 + 39895921 ACCAGTTCAAAAGGTATGAGAGCAAA--CACATTGGAAAAATTAAAAGCAATCTCCTATCACCAGAAGAGGGTGTAACAGATAATGAGGTAGGCGTGGTGGAGTGATGAATGATAAAGTGGAAGAATTAGGTAGAAACAGATAATT--AAAAATCAGT---GTGAATGGTTGAATTTCTTTTGGATAAAATATTTAAGATGCAGGGAAGGA-----GTTTCATCTGGGAAATGGTATAATCAGATTTGCATTATAGGATACAGTGGGGAATGGACTGGAGGAGTGGACTGGATCAAGTCCATACTTCATCAGTATGGAGTTACTGAGATTAGCTGGA-----ATTCTGATAATGATTT---------TGGCACTAATGGCACTAATAAtgatgtggaaatgttggggtttgaaatcttgagtgatctttggtgcaaagaggtggtcttattaga-----------------------------------------------gcacagagacaggacccttgggcagaaaggcctgcaagggggggggcagtgaggggtagagaggagtggcagattatatacttgggagccgtgggaagtaaagacaaggaaggtttccaaaggactttcatatgttaaagaagactcacaggatcctggaggcctcgcaattatcaagctaaggttgttttttcctctagcatagcatattagcattaagat-tgggagttcctggaagaatgtcatactctgtctgcc----caagtatttg----tcaatg----gtctgtaaatcatttcttttacctttgttctccacattaATACTATTGATGGGCGAGGAAAGAGTCAATGGTCATTTTGGACTTTCTTTCTTTCTTTTTTTCATTTTTGGATTTCTAAT-TGGAATCTGTGTGGATGATGGAGTGCTGGTAGAGAATACAGTTTTGG-------------AAAG--AAG---ATGGTGAATTTAACCTTGAATAGAA--------TGAGTTGGAAACTCTTGTCAGACACTGAAAGCAATTCATT i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 659495 605 - 6883506 -ccagtccaaaagatatgagagcaaa-gcacattgaaaatattgaaagcagtttcccatcaccagaagatag-------ggtaatgaggtaggagtgatggagtgatgagtaataagtctggtgaaatatgtaggaacagataatttaaaaaatcagg---ctgaatgtttgaatgttattcag--aaaggacttgagaacctgggataga-----ttttaaactagggagtggcataatcagatttgcatttcagaatgttttacagagaagtctgg-ggaatggattggagaagata----------aagta------tatggagattacttagaatgctgt--taatattgattc---------t--------------------------------------------------------------ttgaaaggagat----------ga-----------------------------------------------ct----gcatg---------------------tactgaggcaatggcagtgaggatgaaatggaaggggtagacttgagagttatg-------------------------------------------------------------------------------------------------------------------------ctttagcactaatat-tg-------ataggg--------------------c----tgagtgactgattacatatg----aagtatgag------------------------------------------ggatag--cacagtcaaggg-----------------------------taattttcagatttttgatttgaaatctggctggaagacagagcactggtagaggataaggttttag-------------aaag--aagatgat---gaatttagttttgaacaggc--------tgagtttgaga-tcatgttgtacattcaaaataaatcgtt i dasNov3.JH568778 C 0 C 0 a score=314554.000000 s hg38.chr21_GL383578v2_alt 53213 24 + 63917 AGGTAGAAGGGCTGAGCTGAAAAT s panTro5.chr21 890712 24 + 33445071 gggtagAAGGGCTGAGCTGAAAAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575347 24 + 46275980 AGGTAGAAGGGCTGAGCTGAAAAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487484 24 - 13858734 gggtagAAGGGCTGAGTTGAAAAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615801 24 + 32716333 gggtagAAGGGCTGAGCTGAAAAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680408 24 - 185818997 gggtagAAGGGCTGAGCTGAAAAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488483 24 - 192294377 GGGTAGAAGGGCTGAGCTGAAAAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933332 24 + 9440265 gggtagAAGGGCTGAGCTGAAAAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677580 24 + 21915920 gggtagAAGGGCTGAGCTGAAAAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314292 24 - 90373283 GGGTAGAAGGGCTGAGCTGAAAAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656379 24 + 1337817 gggtagAAGGGCTGAGCTGAAAAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625605 24 - 3237654 gggtagaagggctgagctgaatat i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163133 24 + 50472720 GTCTAGAAGGGCTCAGCTGAAAAT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503195 24 + 13128814 gggtagAAGGGCTGAGCTGAAAAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040726 24 - 14377064 AGGTAGAAGGGCTGAGCTGAAAAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088392 24 + 9889416 GGATAGAAGGGCTGAGCTGAAAAT i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18345800 24 - 38779656 gggtgtaagcattgggatgaacat i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75837372 24 + 98207768 GGGTTCTAATGATTAACTAAATAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11458090 23 + 39895921 -AAAGGAAGGGCTGGACTGAAATT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 660100 24 - 6883506 gagtggaaaggctggactaaaaat i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16859575 15 + 47401472 I a score=370584.000000 s hg38.chr21_GL383578v2_alt 53237 28 + 63917 TTAGAGTGGCTTGGATGAC--AGATcagtg s panTro5.chr21 890736 28 + 33445071 TTAGAGTGGCTTGGATGAC--AGATcagtg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575371 28 + 46275980 TTAGAGTGGCTTGGATGAC--AGATcagtg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487508 28 - 13858734 TTAGAGTGGCTTGGATAAC--AGATcagtg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615825 28 + 32716333 TTAGAGTGGCTTGGACGAC--AGATcagtg i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680432 28 - 185818997 TTAGAGTGGCTAGGACGAC--AGATcagtg i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488507 28 - 192294377 TTAGAGTGGCTAGGACGAC--AGATcagtg i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933356 28 + 9440265 TTAGAGTGGCTAGGACGAC--AGATcagtg i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677604 28 + 21915920 TTAGAGTGGCTAGGATGAC--AGATcagtg i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314316 28 - 90373283 TTAGAGTGGTTAGGACAAC--AGATcagtg i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656403 28 + 1337817 TTAGAGTGGCTAGGACGAC--AGATcagtg i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625629 28 - 3237654 TTAGAGTGGCTAGGATGAC--AGATcaatg i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163157 28 + 50472720 TTAGAATGGATAGGACGAT--AGATcagtg i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503219 28 + 13128814 TTAGAGTGGATAGGACGAT--AGATCAGTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040750 28 - 14377064 TTAGAGTCGATAGGACGAT--AGATcagtg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088416 28 + 9889416 TTAGAGTGGATAGGACGAT--AGATcagtg i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16859590 28 + 47401472 TTAGAGTGGCTTGGATGAC--AGATCAATG i micMur3.chr31 I 15 C 0 s otoGar3.GL873528 18345824 28 - 38779656 ttagagtGGATTGGATGAC--AAGTcagtg i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75837396 28 + 98207768 TTAAACAGAAGATGACCAA--GAAGCCATA i mm10.chr16 C 0 C 0 s canFam3.chr31 11458113 30 + 39895921 TTAGAGTAGGTCAGATCACTAAGGTGAGTG i canFam3.chr31 C 0 I 8655 s dasNov3.JH568778 660124 30 - 6883506 ttagagtGGATTGATGTACTGAGATcaatg i dasNov3.JH568778 C 0 C 0 a score=302480.000000 s hg38.chr21_GL383578v2_alt 53265 23 + 63917 tatctcaactttgttatacataa s panTro5.chr21 890764 23 + 33445071 tatctcaactttgctatacataa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575399 23 + 46275980 tatctcaactttgttatacataa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487536 23 - 13858734 tatctcaactttgctatacaaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615853 23 + 32716333 tgtcccaactttgctatacataa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680460 23 - 185818997 tatctcaactttgctgtacataa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488535 23 - 192294377 tatctcaactttgctgtacataa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933384 23 + 9440265 tatctcaactttgctgtacataa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677632 23 + 21915920 tatctcaactttgctgtacataa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314344 23 - 90373283 tatctcaactttgctgtacatga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656431 23 + 1337817 tatctcaactttgctgtacataa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625657 23 - 3237654 tatctcaactttgctgtacataa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163185 23 + 50472720 tatctcaactttggtatacataa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503247 23 + 13128814 TACCTCAACTTTGGTATACATAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040778 23 - 14377064 tacctcaactttggtatacataa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088444 23 + 9889416 tgtctcaattttggtatacataa i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16859618 21 + 47401472 t--ctcaactttgctacacataa i micMur3.chr31 C 0 I 4922 s otoGar3.GL873528 18345852 21 - 38779656 t--ctcaactttgctatgtataa i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75837424 23 + 98207768 TAtctcaactttgctacaagtac i mm10.chr16 C 0 I 2 s dasNov3.JH568778 660154 23 - 6883506 gttctcaaccttgctacaaataa i dasNov3.JH568778 C 0 C 0 e canFam3.chr31 11458143 8655 + 39895921 I a score=515855.000000 s hg38.chr21_GL383578v2_alt 53288 58 + 63917 taaacagctttt-----------aaaa---------aattttatcgtctatgctacatt----ccacaccaactaaatcaga s panTro5.chr21 890787 58 + 33445071 taaacagctttt-----------aaaa---------aattttatcgtctatgctacatt----ccacaccaattaaatgaga i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575422 58 + 46275980 taaacagctttt-----------aaaa---------aattttatcgtctatgctacatt----ccacaccaattaaatcaga i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487559 58 - 13858734 taaacagctttt-----------aaaa---------aattttatcgtctatgctacatt----ccacaccaattaaatcaga i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615876 56 + 32716333 taaacagctttt-----------aaaa---------aattttgtctccta-gcctcatt-----cacaccaattaaatcaga i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680483 58 - 185818997 taaacagcttta-----------aaaa---------atttttattgcctatgctacatt----ccacaccaattaaatcagc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488558 58 - 192294377 taaacagcttta-----------aaaa---------atttttattgcctatgctacatt----ccacaccaattaaatcaga i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933407 58 + 9440265 taaacagcttta-----------aaaa---------atttttattgcctatgctacatt----ccacaccaattaaatcaga i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677655 58 + 21915920 taaacagcttta-----------aaaa---------atttttattgcctatgctacatt----ccataccaattaaatcaga i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314367 57 - 90373283 taaaaaccttta-----------aaaa---------a-ttttattgcctatgctacatt----ccacaccaattaaatcaga i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656454 58 + 1337817 taaacagcttta-----------aaaa---------atttttattgcctatgctacatt----ccacaccaattaaatcaga i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625680 58 - 3237654 taaacagcttta-----------aaaa---------atttttattgcctgtggtacatt----ccacaccaattaaatcaga i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163208 65 + 50472720 gaaaccactt-------------aaaattttttttaaattgtattgcctatgcgacatt----ccacaccaattaaatcaga i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503270 71 + 13128814 GAAACCGCtttttaaaaaaaaaaaaaatt-------aattGTATtgcctatgtggcatt----tcacaccaattgaatcaga i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040801 70 - 14377064 gaaaccgctttttaa--------aaaatattttttaaattgtattgcctatgcggcatt----ccacaccaattaaatcaga i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088467 71 + 9889416 gaaaccgctttttaaa-------aaaatttttttttaattgtattgcctatgcggcatt----ccacaccaattaaatcaga i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18345873 57 - 38779656 gaattagcattt-----------aaaa---------a-ttctactgccaaggccgtact----ccagaacaattaaatcagc i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75837449 62 + 98207768 gaatgaagattt-----------taaa---------aattctactactaaggttgcattctgtctagatcaacttaaacaga i mm10.chr16 I 2 I 4845 s dasNov3.JH568778 660177 58 - 6883506 gaaccaggattt-----------tgaa---------aattttattgcccaggatatact----ccagaccaataaaatgtga i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16859639 4922 + 47401472 I e canFam3.chr31 11458143 8655 + 39895921 I a score=299513.000000 s hg38.chr21_GL383578v2_alt 53346 34 + 63917 atctctaggggcaggaaccaagcattgac---atttc s panTro5.chr21 890845 34 + 33445071 atctctaggggcaggaaccaagcatggac---atttc i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575480 34 + 46275980 atctctaggggaaggaaccaagcattgac---atttc i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487617 34 - 13858734 atctctaggggcaggaaccaagcattgac---atttc i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615932 34 + 32716333 acctctaggagcaggaatcaagcactgac---atttc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680541 29 - 185818997 atctctaggggcaggaactaagcactgac-------- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488616 29 - 192294377 atctctaggggcaggaactaagcaCTGAC-------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933465 29 + 9440265 atctctaggagcaggaactaagcactgac-------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677713 30 + 21915920 atctctaggggcaggaactaagcactgac-------t i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314424 29 - 90373283 atctctaggggcaggaactaagcgctgac-------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656512 29 + 1337817 atctctaggggcaggaactaagcGCTGAC-------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625738 37 - 3237654 atctctaggggcaggaaccaagcactgacatttcttT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163273 34 + 50472720 atttctaggggcaggaaccaggcactgac---atttc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503341 34 + 13128814 atctgtaggggcaggaaccaatcacttac---atttc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040871 34 - 14377064 atctctaggggcaggaaccaagcactgac---atttc i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088538 34 + 9889416 atctctaggggcaggaaccaagcaCTGAC---GTTTC i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18345930 33 - 38779656 atttct-ggggccagacccaagccttgac---atttc i otoGar3.GL873528 C 0 C 0 s dasNov3.JH568778 660235 34 - 6883506 atcttggaaggcaggacccaatcatcaat---acttc i dasNov3.JH568778 C 0 I 11684 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e canFam3.chr31 11458143 8655 + 39895921 I a score=78627.000000 s hg38.chr21_GL383578v2_alt 53380 21 + 63917 ------ttTCTTTTtttt---gtt----aacttt s panTro5.chr21 890879 23 + 33445071 ------ttTCTTTTTTtt-ttgtt----aacttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575514 21 + 46275980 ------ttTCTTTTtttt---gtt----aacttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487651 18 - 13858734 ------ttTCTTTTtttt---gtt----aac--- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615966 24 + 32716333 ------ttTCTTTTTTTttttttt----aacttt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680570 20 - 185818997 -------ttttttttttt---ttt----aacttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488645 20 - 192294377 -------TTTTTTTtttt---ttt----aacttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933494 19 + 9440265 --------tttttttttt---ttt----aacttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677743 21 + 21915920 ------ttttttTTtttt---ttt----aaattt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314453 18 - 90373283 -------atttctttttt---t------aacttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656541 24 + 1337817 -------TTTTTTTTTTT---ttttttaaacttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625775 21 - 3237654 ------TTTTTTTTttct---ttt----aacttt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163307 19 + 50472720 --------ttTTTTtttt---ttt----aacttt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503375 22 + 13128814 -----ttTTTTTTTtttt---ttt----aacttt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040905 17 - 14377064 ----------ttTTtttt---ttt----aacttt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088572 15 + 9889416 ------------TTtttt---ttt----aacctt i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18345963 21 - 38779656 aaaaactccctggatggt---tcc---------- i otoGar3.GL873528 C 0 I 273 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e dasNov3.JH568778 660269 11684 - 6883506 I e canFam3.chr31 11458143 8655 + 39895921 I a score=2121243.000000 s hg38.chr21_GL383578v2_alt 53401 240 + 63917 tattttaagtttaggagtacatgtgtaggatgtacaggtttgttacataggtaagtgtgtgtcacggggtttgttgtaccaattatttcattactcaggtattaagcctagtatgcattaataatttttcctgagcctctcccacct-------tccaccctccaccctcca-------acaggcctcagtgtgtgtcattcccctgtatgtgtccatgtgttctcatcatttagct-ccacttgtaagtgagaa s panTro5.chr21 890902 234 + 33445071 tattttaagtttaggagtacatgtgtaggatgtacaggtttgttacataggtaagtgtgtgtcacggggtttgttgtaccaattatttcattactcaggtattaagcctagtatgcattagtaatttttcctgagcctctcccacct-------tccaccctccaccctccaccctccaacaggcctcagtgtgtgtcgttcc-------------atgtgttctcatcatttagct-ccacttgtaagtgagaa i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575535 240 + 46275980 tattttaagtttaggagtacatgtgtaggatgtacaggtttgttacataggtaagtgtgtgtcacggggtttgttgtaccaattatttcattactcaggtattaagcctagtatgcattaataatttttcctgagcctctcccacct-------tccacgctccaccctcca-------acaggcctcagtgtgtgtcattcccctgtatgtgtccatgtgttctcatcatttagct-ccacttgtaagtgaaaa i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487669 238 - 13858734 --ttttaagtttaggagtacatgtgtaggatgtacaggtttgttacataggtaagtgtgtgtcatgggatttgttgtaccaattgtttcattactcaggtattaagccttgtatgcatttgtaatttttcctgagcctctccctcct-------tccaccctccaccctcca-------acaggcctcagtgtgtgtcgttcccctgtatgtgtccatgtgttctcatcatttagct-ccacttgtaagtgagaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1615990 240 + 32716333 cattttaagtttaggagtacatgtgtaggatgtgcaggtttgttacataggtaagtgtgtgtcgtggggtttgttgtaccaattatttcattactaaggtattaagcctagtatgcatcagtaatttttcctgagcctctccctcct-------tccaccccccaccctcca-------acaggcctcagtgtgtgttgttcccctctatgtgtccatgtgttctcatcatttagct-ccacttgtaaatgagaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680590 228 - 185818997 tattttaagtttaggagtacatgtgtaggatgtg-----------cataggtaaa-gtgtgtcatggggtttgttgtaccaattatttcattacccagatattaagcctagtatccattagtaatttttcttgagtctctccctcct-------tccaccctccatcctcca-------acaagcctcagtgtgtgttgttcccctctatgtgcccatgtgttctcatcatttagct-ccacttgtaagcgagaa i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488665 228 - 192294377 tattttaagtttaggagtacatgtgtaggatgtg-----------cataggtaaa-gtgtgtcatggggtttgttgtaccaattatttcattacccagatattaagcctagtatccattagtaatttttcttgagtctctccctcct-------tccaccctccatcctcca-------acaagcctcagtgtgtgttgttcccctctatgtgcccatgtgttctcatcatttaggt-ccacttgtaagcgagaa i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933513 228 + 9440265 tattttaagtttaggagtacatgtgtaggatgtg-----------cataggtaaa-gtgtgtcatggggtttgttgtaccaattatttcattacccagatattaagcctagtatccattagtaatttttcttgagtctctccctcct-------tccaccctccatcctcca-------acaagcctcagtgtgtgttgttcccctctatgtgcccatgtgttctcatcatttagct-ccacttgtaagcgagaa i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5677764 240 + 21915920 tattttaagtttaggagtacatgcgtaggatgtgcaggtttgttacataggtaaatgtgtgtcatggggtttgttgtaccaattatttcattacccagatattaagcctagtatccattagtaattttttttgagtctctccctcct-------tccaccctccatcctcca-------acaagcctcagtgtgtgttgttcccctctatgtgcccatgtgttctcatcatttagct-ccacttgtaagcgagaa i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314471 240 - 90373283 tattttacgtttaggagtacatgtgtaggatgtgcaggtttgttacataggtaaatgtgtgtcatggggtttgttgtaccaattattttattacccagatattaagcctagtatccattagtaatttttcctgagcctctccctcct-------tccactctccaccctcca-------acaagcctcagtgtgtgttgttcccttctatgtgcccatgtgttctcatcatttagct-ccacttctaagcgagaa i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656565 240 + 1337817 tattttaagtttaggagtacatgtgtaggatgtgcaggtttgttacataggtaaatgagtgtcatggggtttgttgtaccaattatttcattacccagatattaagcctagtatccattagtaatttttcttgagtctctccctcct-------tccaccctccatcctcca-------acaagcctcagtgtatgttgttcccctctatgtgcccatgtgttctcatcatttagct-ccacttgtaagcaagaa i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 625796 247 - 3237654 tattttaagtttaggagtacatgcgtaggatgtgcaggtttgttacgtaggtaaatgtgtgtcatggggtttgttgtaccaattatttcattacccaggtattaagcctagtatccattagtaatttttcctgagcctctccctccttccaccctccaccctccaccctcca-------acaagcctcagtgtgtgttgttttcctctgtgtgcccatgtgttctcatcatttagct-ccacttgtaagcgagaa i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163326 233 + 50472720 cattttaagttta-gggtacatgtataggatgtgcaggtttgttacataggttaatgtgtgtcacagggtttg-------aattatttcattacccaggtattaaacatagtatctattagtaatttttcctgatcctatccctcct-------tccacccttcaccctaca-------ataggcccaagtgtgtgttgtttccctctgtgtgtccatgtgttctcatcctttagctcccacttgtaggtgagaa i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503397 234 + 13128814 cattttaagtttaggggtacatgtataggatgtgcaggtttgttacataggttaatgtgtgtaatggggtttg-------aattatttcattacccaggtattaaaccttgtatccattcgtaatttttcctgatcctatccctcct-------tcctcccttcaccctaca-------ataggcccgagtgtgtgttgtttccctctgtgtgtccatgtgttctcatctttaagctcccacttgcaggtgagaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7040922 233 - 14377064 cattttaagtttaggggtacatgtataggatgtgcaggtttgttacataggttaatgtgtgtcatggggtttg-------aattatttcattacccaggtattaaacctagtatccattagtaatttttcctgatcctatccctcc--------tccacccttcacctgaca-------ataggcccaagtgtgtgttgtttccctctgtgtgtccatgtgttctcatcctttagctcccacttgtaggtgagaa i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088587 229 + 9889416 c-----aggtttaagggtacatgtataggatgtgcagttttgttacataggttaatgtgtgtaatggggtttg-------aattatttcattacccaggtattaaacctagtatccattagtaatttttcctgatcctatctgtcct-------tccacccttcaccctaca-------ataggcccaagtgtatgttgtttccctctgtgtgtccatgtgttctcatcctttagctcccacttgtaggtgagaa i aotNan1.NW_018487195v1 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e otoGar3.GL873528 18345984 273 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I e canFam3.chr31 11458143 8655 + 39895921 I a score=6505348.000000 s hg38.chr21_GL383578v2_alt 53641 665 + 63917 tatatggtatttggttttcggtt-gtgcattagtttgctaaggataatggcttctagctccatccatgtcctggcaaaggacatgatcttgtt--ttttttatggctgtgtagtattacatgatatatatgtaccacatattctttatccaatctattattggtgggcatttggattgattccaagcctttgctattgtgaatagttctgcagtgaacatacgggtacatgtatctttataatagaatgatttatt--ttccttttggtgtata-cccagtaatgggattc-------ctgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcactgcactgtcttccacaatggttgaattaatttaatttacactcccattaacagtgtataagcattcctttttctgcacaacctctccaccatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcattgtggttttgattttcatttctgtaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt----tcttatacatttg-gttaagttcctcatagaACGCACTGACATTTCAA s panTro5.chr21 891136 667 + 33445071 tatatggtatttggttttcggttcatgcattagtttgctaaggataatagcttctagctccatccatgtcctggcaaaggacatgatcttgtt--ttttttatggctgtgtagtattacatgatatatatgtaccacatattctttatccaatctattattggtgggcatttggattgattccaagcctttgctattgtgaatagttctgcagtgaacatacgggtacatgtatctttataatagaatgatttatt--ttccttttggtatata-cccagtaatgggattc-------ctgagtcagatggtatttctgactttaggtctttgaggaatc----------atcactgcactgtcttccacaatggttgaattaatttaatttacactcccattaacagtgtataagcattcctttttctgcacaacctctccaccatctgttattttttgaattttgataatagccattctgattgatgtgagatggtatctcattgtggttttgattttcatttctgtaatgatcactgatgctgggc-ttttttcttcatatgcttgttggccacacgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt-----cttatacatttg-gttaagttcctcatagaACGCACTGACATTTCAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14575775 663 + 46275980 tatatggtatttggttttcggtt-gtgcattagtttgctaaggataatggcttctagctccatccatgtcctggcaaaggacatgatcttg-t--ttttttatggctgtgtagtattacatgatatatatgtaccacatattctttatccagtctattattggtgggcatttggattgattccaagcctttgctattgtgaatagttctgcagtgaacatacgggtacatgtatctttataatagaatgatttatt--ttccttttggtgtata-cccagtaatgggattc-------ctgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcactgcactgtcttccacaatggttgaattaatttaatttacactcccattaacagtgtataggcattcctttttctgcacaacctctccaccatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcattgtggttttgattttcatttctgtaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacacgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt-----cttatacatttg-gttaagttcctcatagaACGCACTGACATTTCAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 487907 669 - 13858734 tatatggtatttggttttcggttcgtgcattagtttgctaaggataatggcttctagctccatccatgtcctggcaaaggaaatgatcttt-t--ttttttatggctgtgtagtattacatgatatatatgtaccacatattctttatccaatctattattggtgggcatttggattgattccaagcctttgctattgtgaatagttctgcagtgaacatacgggtacatgtatctttataatagaatgatttatt--ttccttttggtatata-cccagtaatgggattc-------ctgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcactgcactgtcttccacaatggtcgaattaatttaatttacactcccattaacagtgtataagcattcctttttctgcacaacctctccaccatctgttattttttgaattttgaaaatagccattctgattggtgtgagatggtatctcattgcggttttgattttcatttctgtaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacaggtatgtcttcttttaaa------------aagtgtctgttcaggtcctttgccactttttaatggag-ttttttttttttttttttgtacatttg-gttaagttcctcttagaAAGCACTGACATTTCAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1616230 667 + 32716333 tatatggtatttggttttaggttcctgcattagtttgctaaggataatggcctctagctccatctatgtcctggcaaaggacatgatcttgtt--ctttttatggctgtgtagtattatatggtctatatgtaccacatattctttatccaatctattattggtgggcatttggattgattccaagcctttgctattgtgaatagttctgcagtgaacatacgggtacatgtatctttataatagaatgatttatt--ttccttttggtatata-cccagtaatgggattc-------ctgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcaccgcactgttttccacaatggttgaattaatttaatgtacactcccactaacagtgtataagca-tcctttttctgcacaacctctccagcatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcactgtggttttgattttcatttctctaatgatcagtgatgctgggc-tttt--cttcatgtgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt--tttctaatacatttg-gttaagttcctcatagaAAGCACTGACAtttcaa i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152680818 668 - 185818997 tatatggtatttggttttctgttcctgcattcgtttgctaaggataatggcctccagctccatccatgtcctggcaaagaacatgatcttgtt--ctttttatggctgcgtagtattacatggtatatatgtaccacatattctttatccaatctattactggtgggtatttggattgattccacgcctttgatattgtgaatagttctgcagtggacatacgtgtacatgtgtctttatatttgaatgatttatt--ttccttttgatatata-cccagtaatgggattc-------ctgggtcaaatggtatttctgaatttagatctttgtggaatc----------atcactgcactgtcttccacaatcattgaattaatttaatttacactcccactaacagtgtataagcattccttttcctgcacaacctctccagcatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcattgtggttttgattttcatttctctaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt--tttcttatacatttg-gttaagttcctcatagaAAACACTGAAATTTCAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159488893 668 - 192294377 tatatggtatttggttttctgttcctgcattcgtttgctaaggataatggcctccagctccatccatgtcctggcaaagaacatgatcttgtt--ctttttatggctgcgtagtattacatggtatatatgtaccacatattctttatccaatctattactggtgggtatttggattgattccacgcctttgatattgtgaatagttctgcagtggacatacgtgtacatgtgtctttatatttgaatgatttatt--ttccttttgatatata-cccagtaatgggattc-------ctgggtcaaatggtatttctgaatttagatctttgtggaatc----------atcactgcactgtcttccacaatcattgaattaatttaatttacactcccactaacagtgtataagcattccttttcctgcacaacctctccagcatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcattgtggttttgattttcatttctctaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt--tttcttatacatttg-gttaagttcctcatagaAAACACTGACATTTCAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5933741 668 + 9440265 tatatggtatttggttttctgttcctgcattcgtttgctaaggataatggcctccagctccatccatgtcctggcaaagaacatgatcttgtt--ctttttatggctgcgtagtattacatggtatatatgtaccacatattctttatccaatctattactggtgggtatttggattgattccacgcctttgatattgtgaatagttctgcagtggacatacgtgtacatgtgtctttatatttgaatgatttatt--ttccttttgatatataccccagtaatgggattc-------ctgggtcaaatggtatttctgaatttagatctttgtggaatc----------atcactgcactgtcttccacaatcattgaattaatttaatttacactcccactaacagtgtataagcattccttttcctgcacaacctctccagcatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcattgtggttttgattttcatttctctaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag--ttttttttt--tttctcgtacatttg-gttaagttcctcatagaAAACACTGAAATTTCAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5678004 667 + 21915920 tatatggtatttggttttctgttcctgcattcgtttgctaaggataatggcctccagctccatccatgtcctggcaaagaacatgatcttgtt--ctttttatggctgcgtagtattacatggtaaatatgtaccacatattctttatccaatctattactggtgggtatttggattgattccacgcctttgatattgtgaatagttctgcagtggacatacgtgtacatgtgtctttatatttgaatgatttatt--ttccttttgatatata-cccagtaatgggattc-------ctgggtcaaatggtatttctgaatttagatctttgtggaatc----------atcactgcactgtcttccacaatcattgaattaatttaatttacactcccattaacagtgtataagcattccttttcctgcacaacctctccagcatctgttattttttgaactttgataatagccattctgattggtgtgagatggtatctcattgtggttttgattttcatttctctaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag--ttttttttt--tttcttatacatttg-gttaagttcctcatagaAAACACTGAAATTTCAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12314711 666 - 90373283 tatatggtatttggttttctgttcctgcattcgtttgctaaggataatggcctccagctccatccatgtcctggcaaagaacatgatcttgtt--ctttttatgactgcgtagtattacatggtatatatgtaccacatattctttatccaatccattactggtgggtatttggattgattccacacctttgatattgtgaatagttctgcagtgaacatacgtgtacatgtgtctttataatagaatgatttatt--ttccttttgatatata-cccagtagtgggattc-------ctgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcactgcactgtcttccacagtggttgaattaatttaatttacactcccactaacagtatataagcattccttttcctgcacaacctctccagcatctgttattttttgaattttgatcatagccattctgattggtgtgagatagtatctcattgtggttttgattttcatttctctaatgatcagtgatgctgggc-tttt--cttcgtatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag---tttttttt--tttcttatacatttg-gttaagctcctcatagaAAACACTGAACTTTCAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 656805 668 + 1337817 tatatggtatttggttttctgttcctacattcgtttgctaaggataatggcctccagctccatccatgtcctggcaaagaacatgatcttgtt--ctttttatggctgcgtagtattacatggtatatatgtaccacatattctttatccaatctattactggtgggtatttggattgattccacgcctttgatattgtgaatagttctgcagtggacatacgtgtacatgtgtctttatatttgaatgatttatt--ttccttttgatatata-cccagtaatgggattc-------ctgggtcaaatggtatttctgaatttagatctttgtggaatc----------atcactgcactgtcttccacaatcattgaattaatttaatttacactcccactaacagtgtataagcattccttttcctgcacaacctctccagcatctgttattttttgaattttgataatagccattctgattggtgtgagatggtatctcattgtggtcttgattttcatttctctaatgatcagtaatgctgggc-tttt--ctttatatgcttgttggccacatgtatgtcttcttttaaa------------aagtgtctgttcatgtcctttgccactttttaatggag-tttttttttt--tttcttatacatttg-gttaagttcctcatagaAAACACTGAAATTTCAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 626043 669 - 3237654 tatatggtatttggttttctgttcctgcattcgtttgctaaggataatggcctccagctccttccatgtcctggcaaagaacacgatcttgtt--ctttttatggctgcgtagtattacatggtatatatgtaccacatattctttatccaatctattactggtgggtatttgaattgattccacacctttgatattgtgaatagttctgcagtgaacatatgtgtacatgtgtctttataatagaatgatttatt--ttccttttgatatata-cccagtaacgggattc-------ccgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcactgcactgtctcccacaatggctgaattaatttaatgtgcactcccactaacagtgtataagcattcctttttctgcacaacctctccagcatctgtgattttttgaatttggataatagccaatctgattagtgtgagatggtatctcattgtggttttgattttcacttctctaatgatcagtgatgctgggc-tttt--cttcatatgcttgttggccacatatatgtcttcttttaaa------------aagtgtctgttcctgtcctttgccactttttaatggagttttttttttt--tttcttatacatttg-gttaagttcctcatagaAAACACTGATATTTCAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19163559 659 + 50472720 tatatggtatttggttttctgttcctgcattagtttgctaaggataatgatctccacctcccttcatgttcctgcaaaggacatgatcttgtt--ctttttttggctgcatagtattccataatatgtatgtaccacatattctttatccagtctattattagtggacatttggattgattccacgtctttgctgttgtgaatactgctgcagtgaacatatgtgtacatgtgtctttataatagaatgatttatt--tttcttttggtatata-cccagtgatgggattg-------ctgggtcaaatggtatttctgactttaggtctttgaggaatt----------atcactgcagtgtctttcacaatggttcacctaa-----tttacactcccagtaacagtgactaagcgttcctttttctgtacaactcttccagcatctgttattttttgaatactgatattagtcattctgactggtgtgagatgtcatctcattgcagttttgattttcatatttctaatcatcagtggtgctgggc-tttt--cttcacatatttgttggctgcatacatatcttcttttaaa------------aattgtctattcatattctttgccactttttaatggag------ttttt--tttcttatacatttgttttaagttccttataaaAAACACTGACCTTTCAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2503631 658 + 13128814 tatatggtatttggttttctgttcctgcattagtttgctaaggataatggtctccacctccattcatgttcccgcaaaggacatgatcttgtt--ctttttatggctgcatagtattccataatatatatgtaccacatattctttatccagtctattattggtggacatttggattgattccacatctttgctattgtgaatagggctgcagtgaacatatgtgtacatgcgtctttataatagaatgatttatt--tttattttggtatata-cccagtgatgggattg-------ctgggtcaaatggcgtttctgactttaggtgtttgacgaatc----------atcgctgcagtgtctttcacaatggttgacctaa-----tttacactcccactaacagtgactaagcgttcctttttctgcacaacttctccagcatctgttattttttgaatattgatattagtcattctgactggtgtgagatgtcatctcattgcggttttgattttcttatttctaatgatcagtggttctgggc-tttt--cttcacatatttgttggctgcatgtatatcttcttttaaa------------aagtgtctattcatgttctttgcaactttttaatagag------ttttt--cttcttatacatttg-tttaagttccttataaaAAACACTGACCTTTCAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7041155 661 - 14377064 tatactgtgtttggttttctgttcctgcattagtttgctaaggataatggtctccgcctccattcatgttcctgcaaaggacatggtcttgtt--ctttttatggctgcatagtattccataatatatatgtaccacatattctttatccagtctattattggtggacatttggattgattccacatctttgctattgtgaatagtgctgcagtgaacatatgtgtacatgtgtctttataacagaatgatttatt--tttcttttggtatata-cccagtgatgggattg-------ctgggtcaaatggcatttctgactttaggtctttgaggaatc----------atcgctgcagtgtctttcacaatggttgacctaat----tttacactcccactaatagtgacaaagcgttcctttttctgcacaacttctctagcatctgttattttttgaatattgatattagtcattctgactggtgtgagatgtcatctcattgcggttttgattttcatatttctaatgatcagtggtgctgggc-tttt--cttcacatatttgttggctgcatgtatatcttcttttaaa------------aattgtctattcatgttctttgccactttttaatggag----ttttttt--tttcttatatatttg-tttaagttccttgtaaaAAACACTGACCTTTCAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6088816 668 + 9889416 tatacggtatttgattttctgttcctccattagtttgctaaggataatggtctccacctccattcatgttcctgcaaaggacatgatcttgtt--ctttttatggctgcgtagtattccttaatatatatgtaccacatattctttatccagtctattattggtggacatttggattgattccacatctttactattgtgaatagtgctgcagtgaacatatgtgtacatgtgtctttataatagaatgatttatt--tttcttttggtatata-cccagtgatgggattg-------ctgggtcaaatggtatttctgactttaggtctttgaggaatc----------atcgctgcagtgtctttcacaatggttgacctaa-----tttacactcccactaacagt-actaagtgttcctttttctgcacaac---tccagcatctgttattttttgaatattgatattagtcattctgactggtgtgagatgtcatctcattgcggtttcgattttcatatttctaatgatcagtggtgctgggc-tttt--cttcacatatttgttggctgcatgtatatcttcttttaaaaagtgtctattcaagtgtctattcatgttctttgccactttttaatggag---tttttttt--tttcttatacattt--tttaagttccttataaaAAACACTGACCTTTCAA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18346257 640 - 38779656 TATATGATACATGGTCTCCTAT---------------cttagcacagtgcttttgacgttcattgctgttgtggtgtttaccagta-cttgtttcccttttatggctaaatgattttccctt-taagagtgtaacacaatttgttcatctgttcatcagttgaagaata-ttgggttgctctcagtttggggctatcatgaatggtgctgctacgaacatttgtgtacatat---tttggcatagaaatgtttttcagttatcttagttacata-gctaagggcaagctatactttagctgagtcatatagtaactctacctttaattctacaagaattctttatgaagaattgtcaaactgttttccaaagctgctgtactaa-----ttcacattcccaccacaagcatcaggtttctaatttctctacacagt-tcgacaacatttgtctttttt--------gactctagccagcccagtgggggtga---agtatttctgtatggttttgatttgtgtttccccaataatgaacactattgagtatttt--ttccatgtacttttgatccatttgagtatcttctttggag----------------ctattttcaaatcctttgctaattttta----aa----tcttttt--tgcattatcgaatt--atcaaattctttaccttgtatacaaatattttaa i otoGar3.GL873528 I 273 I 6716 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e dasNov3.JH568778 660269 11684 - 6883506 I e canFam3.chr31 11458143 8655 + 39895921 I a score=4004797.000000 s hg38.chr21_GL383578v2_alt 54306 424 + 63917 AAACTCCTTGGATGGTTCCAGTGGGCATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGACATAGACcagtggatctcaatgttgattccacagtagaatcatttgaagtgctttaaaaaTTCTCAAGATGCAGGTCATGTCGTGCAAGCATTAAATGGGAGTATAAGGAGACAGAGCCCAGATAGTAATATTTTTGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaatttgatgttttttagtataCTAAGTTTATATGGACAATTCATATCAGTGGTGTTATACGATATATGTTCTCAAATGTGGCTTTaatgttgaattgaaataggaataacaaacatccttgtcttgtttctgatcttagaggagaagtattcattttttaatgatt s panTro5.chr21 891803 423 + 33445071 AAACTCCTTGGATGTTTCCAGTGGGCATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGACATAGACcagtggatctcaatgttgattccacagtagaatcatttgaagtgctttaaaaaTTCTCAAGATGCAGGTCATGTCGTGCAAGCATTAAATGGGAGTATAAGGAGACAGAGCCCAGATAGTAATATTTTTGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcgatgttttttagtataCTAAGTTTATATGGACAATTCATATCAGTGGTATTATACGACATATGTTCTCAAATGTGGCTTTaatgttgaattgaaataggaataacaaacatccttgtcttgtttctgatcttagaggagaagcattcttttttta-tgatt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14576438 423 + 46275980 AAACTCCTTGGATGGTTCCAGTGGGCATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGACATAGACcagtggatctcaatgttgattccacagtagaatcatttgaagtgctttaaaaaTTCTCAAGATGCAGGTCATGTCGTGCAAGCATTAAATGGGAGTATAAGGAGACAGAGCCCAGATAGTAATATTTTTGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcgatgttttttagtataCTAAGTTTATATGGACAATTCATATCAGTGGTGTTATATGATATATGTTCTCAAATGTGGCTTTaatgttgaattgaaataggaataacaaacatccttgtcttgtttctgatcttagaggagaagcattcatttttta-tgatt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 488576 424 - 13858734 AAACTCCTTGGATGGTTCCAGTGGGCATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGACATAGACcagtggatctcaatgttgattccacagtagaatcatttgaagtgctttaaaaaTTCTCAAGATGCAGGTCATGTCGTGCAAGCATTAAATGGGAGTATAAGGAGACAGAGCCCAGATAGTAATATTTTTGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcgatgttttttagtataCTAAGTTTATATGGATAATTCATATCAGTGCTGTTATACGATATATGTTCTCAAATGTGGCTTTaatgttgaattgaaataggaataacaaacatccttgtcttgtttctgatcttagaggagaagcattcatttttttatgatt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1616897 423 + 32716333 aaactccttggatgtttccagtgggcattccaagatttaggatcactCTCCCAAAGAGATGACACAGACcagtggatctcaatgttgacgccacaatagaatcatttgcagtgctttaaaaattctcaagatgcaggtcacatcATGCAAGCATTAAATGGGAGTATATGGAGATAGAGCCCAGATGGTAGTATTTTTGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcagtgttgttaagtataCTAAGTTTATATGGACAATTCATATCAGTGGTGTTATACGATATATGTTCTCAAATGTGGCTTTaatgttgaattgaaataggaatagcaaacatcgttgtcttgtttctgatcttagaggagaagcattctttcttta-tgatt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152681486 424 - 185818997 AAACTCCTTGGATGGTGCCAGTGGGCATCCTGAGATTTAGACTCACTCTCCCAGAGAGATGACATAGACcagtgggtctcactgttgactccagaatagaatcatttgaagtgctttaagaattttcaagatccaggtcacattgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcagtgtttttttgtataCTAAGTGTATATGTACAATTCATATCAGTGGTGTTATACAATATACATTCTCAAATGTAGCTTTaatgttgaattgaaataggaataacacacatccctgtcttgtttctgatcttagaggagaagcattcttttttttatgatt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159489561 424 - 192294377 AAACTCCTTGGATGGTGCCAGTGGGCATCCCGAGATTTAGACTCACTCTCCCAGAGAGATGACATAGACcagtgggtctcactgttgactccagaatagaatcatttgaagtgctttaagaattttcaagatccaggtcacattgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcagtgttttttagtataCTAAGTGTATATGTACAATTCATATCAGTGGTGTTATACAATATACATTCTCAAATGTAGCTTTaatgttgaattgaaataggaataacacacatccctgtcttgtttctgatcttagaggagaagcattcttttttttatgatt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5934409 424 + 9440265 AAACTCCTTGGATGGTGCCAGTGGGCATCCCGAGATTTAGACTCACTCTCCCAGAGAGATGACATAGACcagtgggtctcactgttgactccagaatagaatcatttgaagtgctttaagaattttcaagatccaggtcacattgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaattcagtgttttttagtataCTAAGTGTATATGTACAATTCATATCAGTGGTGTTATACAATATACATTCTCAAATGTAGCTTTaatgttgaattgaaataggaataacacacatccctgtcttgtttctgatcttagaggagaagcattcttttttttatgatt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5678671 424 + 21915920 AAACTCCTTGGATGGTGCCTGTGGGCATCCCGAGATTTAGACTCACTCTCCCAGAGAGATGACATAGACTagtgggtctcactgttgactccagaatagaatcatttgaagtgctttaagaattttcaagatccaggtcacatcgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcata--atatataatttgtccttttgaggtgtacaattcagtgttttttagtataCTAAGTGTATATGTACAATTCATATCAGTGGTGTTATACAATATACATTCTCAAATGTAGCTTTaatgttgaattgaaataggaataacacacatccctgtcttgtttctgatcttagaggagaagcattcttttttttatgatt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12315377 420 - 90373283 AAACTCCTTGGATGGTGCCAGTGGGCATCCCAAGATTTAGACTCACTCTCCCAGAGAGATGACATAGACcagtgagtctcaatgttgactccagaatagaatcattggaagtgctttaagaattctcaagatgcaggtcacatcgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcata--atatataattcatccttttgaggtgtacaat----tgttttttagtaCACTAAGTATATATGTACAATTCATATCAGTGGTGTTGTACAATATACATTTTCAAATGTAGCTTTaatgttgaattgaaataggaataacaaacatccctgtcttgtttctgatcttagaggagaagcattcttttgtttatgatt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 657473 424 + 1337817 AAACTCCTTGGATGGTGCCAGTGGGCATCCCGAGATTTAGACTCACTCTTCCAGAGAGATGACATAGACcagtgggtctcactgttgactccagaatagaatcatttgaagtgctttaagaattttcaagatccaggtcacatcgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcata--atatataatttatccttttgaggtgtacaattcagtgttttttagtataCTAAGTGTATATGTACAATTCATATCAGTGGTGTTATACAATATACATTCTCAAATGTAGCTTTaatgttgaattgaaataggaataacacacatccctgtcttgtttctgatcttagaggagaagtattcctttttttatgatt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 626712 425 - 3237654 AAACTCCTTGGATGGTGCCAGTGGACATCCCAAGATTTAGACTCACTCTCCCAGAGAGATGACATAGACcactgggtctcaatgttgaccccagaatagaatcatttgaagtggtttaagaattctcaagatgcaagtcacatcgagcaagcattaaatgggaatatatggagatagagcccagatagtaatatttttGataccagctttattgaggtataatttgcatagtatatataattcatccttttgaggtgtaaaattcagtattttttagtataCTAAGTGTATACGTACAATTCATATCAGTGGTGTTATACAATATATATTCTCAAATGTAGCTTTaatgttgaattgaaataggaatagcaaacatccctgtcttgtttctgatcttagaggagaagtattc-tttctttatgatt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19164218 417 + 50472720 AAACTCCTTGAATTGTTCCAGTGGGTATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGACAT-----agtgggtctcaatgttgactcttcaacagaatcatttaaagtgctttaaatattctcaagatgcaggtcacatcttgaaagcattaaatgggaatgtatggagatagagtacatatggcaatatttttGataccaggtttatttaggtataatttgcata--atataaaattcatccttttaaggtgtccaattcagtg-tttttagcataCTAAATTCATATGGACAATTCATATAAGTAGTGTTATAAAATATATGGCTTCAAATCTGGCTTcaatgttgaattaaaataggaataagaaacatccttgtcttgtttctgatcttagaggagaagcattc-tttttttatgatt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2504289 421 + 13128814 AAACTCCTTGAATGGTTCCAGCGGACATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGATATAGACcagtgggtctcaatgttgactctt-aacagaatcatttaaaatgctttaaatattctcaagacgcaggtcacatcttgcaagcattaaatgggaatatatggagatagagtccatatagcaatatttttGataccaggtttattgaggtataatttgcata--acataaaattcatccttttaaggtgtccaattcagtg-ttttttTCATACTAAGTTCATACTGACAATTCATATAAGTAGTGTTATATAATATATGGCTTCAAATATGGCTTcaatgttgaattaaaataggaataagaaacatccttgtcctgtttctgatcttagaggagaagcattc-tttttttatgatt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7041816 423 - 14377064 AAACTCCTTGAATGGTTCCAGTGG-CACCCCAAGATTTAGAATCACTCTCCCAAAGAGGTGACATGGACcagtgggtctcaatgttgactcttcaacagaatcatttgaaatgctttaaatattctcaagatgcaggtcacatcttgcaagcattaaatgggagtatatggagatagagtccatatatcaatatatttGataccaggtttattgaggtataatttgcata--atataaaattcatccttttaaggtgtccaattcagtgttttttagcataCTAAGTTCATAtggacaattcatataagtagtgttatgcaatatatggcttcaaatctggcttcaatgttgaattaaaataggaataagaaacatccttgtcttgtttctgatcttagaggagaagcattcttttttttatgatt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6089484 421 + 9889416 AA--TCCTTGAATGGTTCCAGTGGGCATCCCAAGATTTAGAATCACTCTCCCAAAGAGATGACATAGACcagtgggtctcaatgttgactcttcaacagaatcatttaaagtgctttaaatattctcaagatgcaggtcacatcttgcaaacattaaatgggagtatatggagatagagtccatatagcattattttCGataccaggtttattgaggtataattcacata--atataaaattcatccttttaaggtgtccaattcagtgttttttagcatCCTAAGTTCATAtggacaattcatataagtagtgttatacaatatatggcttcaaatctggcttcgatgttgaattaaaataggaataagaaacatcattgtcttgtttctgatcttagaggagaagcattc-tttttttatgatt i aotNan1.NW_018487195v1 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e otoGar3.GL873528 18346897 6716 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I e canFam3.chr31 11458143 8655 + 39895921 I a score=9890814.000000 s hg38.chr21_GL383578v2_alt 54730 951 + 63917 aattacaatgttagctctgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ttttctgtcatgcatacccctcaatatctctgatcagttagcttagcggtcagctaatgacttcacatagatttctttgaatgcattaaactagtaagttgctgtcattttgctgaagggctttgggcgcgtgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------actccagcaggcagtttgaaaactcttctttagccttcgtttcctgcttgtgcaaagcctcagacttatccacaggtgagagattaaggccttcccag-gtc-ttttctgcgcttgtgcacatccctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacactccatgtgaaaatctcatcccctggttttttcttttaaagtttttggtctgtta----cttaacccaacttgtgtcactgcct----cagctgcacaattgaataattgccactga-ttgattttaacaaattccttaaggacagggctgttcataccaaacgagctgctgcctcaaatttgagtcaactgtcagtca---catcagataaaaacaagccctgagaatgaaagtgctagtgaggtgaatagtgacagttctctagggataggattttccaggaactccaaacccattcactccctcccagtggctcctaggcttctggagtttacagt--------ttgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgatcttctggaataaatgttcctcaaattctcgcaagcctttgcttaattgctagagttctggcaaaattaa------------tttttttcctttttcagtagtattcgctg s panTro5.chr21 892226 951 + 33445071 aattacaatgttagctctgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagtgtctga------------------------------------ttttctgtcatgcatacccctcaatatctctgatcagttagcttagcggtcagctaatgacttcacatagatttctttgaatgcattgaaccagtaagttgctgtcattttgctgaagggctttgggcgcgtgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------actccagcaggcagtttgaaaactcttctttagccttcatttcctgcttgtgcaaagcctcagacttatccacaggtgagagattaaggccttcccag-gtc-ttttctgcgcttgtgcacatccctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacactccatgtgaaaatctcatcccctggttttttcttttaaagttgttggtctgtta----cttaacccaacttgtgtcactgcct----cagctgcacaattgaataattgccactga-ttgattttaacaaattccttaaggacagggctgttcataccaaatgagctgctgcctcaaatttgagtcaactgtcagtca---catcagataaaaacaagccctgagaatgaaaatgctagtgaggtgaatagtgacagttctctagggataggattttccaggaactccaaacccattcactccctcccagtggctcctaggcttctggagtttacagt--------ttgtgtagcttttggttggaaggctaccatggacatagggaag--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcaaattctcgcaagcctttgcttaattgctagagttctggcaaaattaa------------tttttttcctttttcagtagtattcgctg i panTro5.chr21 C 0 C 0 s panPan2.chr21 14576861 950 + 46275980 aattacaatgttagctctgggtgttgttagtttgttgctatggatgcttgtttgttgattgagtttcctgaattaattgtgaagagtctga------------------------------------ttttctgtcatgcatacccctcaatatctctgatcagttagcttagcagtcagctaatgacttcacatagatttctttgaatgcattgaaccagtaagttgctgtcattttgctgaagggctttgggcgcgtgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------actccagcaggcagtttgaaaactcttctttagccttcgtttcctgcttgtgcaaagcctcagacttatccacaggtgagagattaaggccttcctag-gtc-ttttctgcgcttgtgcacatccctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacactccatgtgaaaatctcatcccctggttttttcttttaaagtttttggtctgtta----cttaacccaacttgtgtcactgcct----cagctgcacaattgaataattgccactga-ttgattttaacaaattccttaaggacagggctgttcataccaaatgagctgctgcctcaaatttgagtcaactgtcagtca---catcagataaaaacaagccctgagaatgaaagtgctagtgaggtgaatagtgacagttctctagggataggattttccaggaactccaaacccattcactccctcccagtggctcctaggcttctggagtttacagt--------ttgtgtagcttttggttggaaggctaccatggacatagggaag--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcaaattctcgcaagcctttgcttaattgctagagttctggcaaaattaa-------------ttttttccttttttagtagtattcgctg i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 489000 947 - 13858734 aattacaatgttagctctgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ttttctgtcacacatacccctcaatatctctgatcagttagcttagcggtcagc---tgacttcacatagatttctttgaatgcattgaaccagtaagttgctgtcattttgctgaagggctttgggcgcgtgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------actccagcaggcagtttgaaaactcttctttagccttcatttcctgcttgtgcaaagcctcagacttatccacaggtgagagattaaggccttcccag-gtc-ttttctgcgcttgtgcacatccttgcaagtg-atatgatcttctagagttccaggaatatgttagctattttcaacactccatgtgaaaatcccatcccctggttttttcttttaaagtttttggtctgtta----cttaacccaacttgtgtcactgcct----cagctgcacaattgaataattgccactga-ttgattttaacaaattccttaaggacagggctgttcataccaaatgagctgctgcctcaaatttgagtcaaatgtcagtca---catcagataaaaacaagccctgagaatgaaagtgctagtgaggtgaatagtgacagttctatagggataggattttccaggaactccaaacccattcactccctcccagtggctcctaagcttctagagtttacagt--------ttgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatggggcagatttaaatgccacacagct--tgctgtttttaccaagggtcagttgattttctggaataaatgttcctcaaattctcgcaagcctttgcttaattgctagagttctggcaaaattaa------------tttttttccttttttagtagtatttgctg i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1617320 951 + 32716333 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgcttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ttttctgtcacgcatacccctcaatatctctgatcagttagcttagcggtcagctaatgacttcacatagatttctttgaatgcattgaaccagtaagttgctgtcattttgctgaagggctttgggcgcgtgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------gctccagcaggcagtttgaaaattcttctttagccttcatttcctgcttgtgcaaagcctcagagttatccgtaggtgagagatcaaggccttcccag-gtc-ttttctgtgcttgtgcacatccctgcaagtgcctctgatcttctagagttccaggaatatgttagatattttcaatattccatgtgaaaatcccatccgctggttttttcttttaaagtttttggtctctta----tttaacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-tcgattttaacaaattccttaaggacggggctgttcataccaaacgagctgctgcctcaaatctgagtcaactgtcagtca---catcagataaaaacaagccctgagaatgaaagtgctagtgaggtgaatagtgacagttctctaaggataggattttccaggaactccaaacccattcactccctcccagtggctcctaggcttctagagtttatagt--------ctgtgtagcttttggttggaaggctacaatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcaaattcttgtaagcctttgcttaattgctagagttctggcaaaattaa------------tttttttccttttttagtagtattcgttc i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152681910 954 - 185818997 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ctttctgtcacgcatacccctcaatatctctgatcagttggcttagcagtcagctaatgacttcacatagatttctttgaatgcattgaaccagcaagtagctgtcattttactgaagggctttgggtgcatgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-gtc-ttttttgtacgtgtgcacattcctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacattacatataaaaatcccatcccccagttttttcttttgaagtttttggtaagtct----cttgacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttaacaaattctttaaggacagggctgttcataccaaatgagctgctgccttagatttgagtcaactgtcagtcacatcatcagataaaaacaagccctgagtgtgacagtgctagtgaggtgaagagtgacagttctctagggataggattttccaggaactccaaacccactcactccctcccggtggctcttaggcttctagagtttacagt--------tcgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtagtattctctc i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159489985 955 - 192294377 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ctttctgtcacgcatacccctcaatatctctgatcagttggcttagcagtcagctaatgacttcacatagatttctttgaatgcattgaaccagcaagtagctgtcattttactgaagggctttgggtgcatgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-gtctttttttgtacgtgtgcacattcctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacattccatataaaaatcccatcccccagttttttcttttaaagtttttggtaagtct----cttgacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttaacaaattctttaaggacagggctgttcataccaaatgagctgctgccttagatttgagtcaactgtcagtcacatcatcagataaaaacaagccctgagtgtgaaactgctagtgaggtgaagagtgacagttctctagggataggattttccaggaactccaaacccactcactccctcccggtggctcttaggcttctagagtttacagt--------tcgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtagtattctctc i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5934833 954 + 9440265 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------cttgctgtcacgcatacccctcaatatctctgatcagttggcttagcagtcagctaatgacttcacatagatttctttgaatgcattgaaccagcaagtagctgtcattttactgaagggctttgggtgcatgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-gtc-ttttttgtatgtgtgcacattcctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacattccatataaaaatcccatcccccagtgttttcttttaaagtttttggtaagtct----cttgacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttaacaaattctttaaggacagggctgttcataccaaataagctgctgccttagatttgagtcaactgtcagtcacatcatcagataaaaacaagccctgagtgtgaaagtgctagtgaggtgaagagtgacagttctctagggataggattttccaggaactccaaacccactcactccctcctggtggctcttaggcttctagagtttacagt--------tcgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtagtattctctc i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5679095 954 + 21915920 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ctttctgtcatgcgtacccctcaatatctctgatcagttggcttagcagtcagctaatgacttcacatagatttctctgaatgcattgaaccagcaagtagctgtcattttactgaagggctttcggtgcatgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-gtc-ttttttgtacgtgtgcacattcctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacattccatataaaaatcccatcccccagttttttcttttaaagtttttggtaagtct----cttgacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttaacaaattctttaaggacagggctgttcataccaaatgagctgctgccttagatttgagtcaactgtcagtcacatcatcagataaaaacaagccctgagtgtgaaagtgctagtgaggtgaagagtgacagttctctagggataggattttccaggaactccaaacccactcactccctcccagtggctcttaggcttctagagtttacagt--------tcgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtagtattctctc i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12315797 952 - 90373283 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ctttctgtcacacatacccctcaatatctctgatcagttggcttagcggtcagctaatgacttcacatagatttctttgaatgcattgaaccagcaagtagctgtcattttactgaagggctttgagtgcatgtgtctgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-gtctttttttgtacgtgtgcagattcctgcaagtgcatatgatcttctagcgttccaggaatatgttagatattttcaacattccatataaaaatcccatcccccggttttttcttttaaagtttttggtaagtct----cttaacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttaacaaattctttaaggacagggctgttcataccaaatgagctgctgccttagatttgagtcaactgtcagtca---catcagataaaaacaagccctgagagtgaaagtactagtgaggtgaagagtgatagttctccagggataggattttccaggaactccaaacccactcactccctcccagtggctcctaggcttctagagttcacagt--------tcgtgtcgcttttggttggaaggctaccatggacatagggagg--------gggaatagggcatatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtagtattctctc i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 657897 954 + 1337817 aattacaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgagtttcctgaattaattgtgaagagtctga------------------------------------ctttctgtcacgcatacccctcaatatctctgatcagttggcttagcagtcagctaatgacttcacatagacttctttgaatgcattgaaccagcaagtagctgtcattttactgaagggctttgggtgcatgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-gtc-ttttttgtacgtgtgcacattcctgcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacattccatataaaaatcccatcccccagttttttcttttaaagtttttggtaagtct----cttgacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttaacaaattctttaaggacagggctgttcataccaaatgagctgctgccttagatttgagtcaactgtcagtcatatcatcagataaaaacaagccctgagtgtgaaagtgctagtgaggtgaagagtgacagttctctagggataggattttccaggaactccaaacccactcactccctcccagtggctcttaggcttctagagtttacagt--------tcgtgtagcttttggttggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtagtattctctc i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 627137 953 - 3237654 aattccaatgttagctgtgggtgttgttagtttgttgctatggatgcttgtttgtttattgggtttcctgaattaattgtgaagagtctga------------------------------------ctttctgtcacacatacccctcaatatctctgatcagttggcttagcggtcagctaatgacttcacatagatttctttgaatgcattgaaccaacaagtagctgtcattttactgaagggctttgggtgcatgtgtttgaggggaatatttcaac--------------------------------------------------------------------------------------attccagcaggcagtttgaaaactctactttagccttcatttcctgcttgtgcaaagcctcagaattatccacaggtgagagattaaggccttcccag-ttc-ttttttgtacttgtgcacattccttcaagtgcatatgatcttctagagttccaggaatatgttagatattttcaacattccatataaaaatcccatcccccagttttttcttttaaagtttttggtaagtct----cttaacccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ttgattttagcaaattctttaaggacagggctgttcataccaaatgagctgctgccttagatttgagtcaactgtcagtca---catcagataaaaacaagccctgagagtgaaagtgctagtgaggtgaagagtgacagttctcaagggataggatttgccaggaactccaaacccactcactccctcccagtggctcctaggcttctagagtttacagt--------tcatgtagcttttcattggaaggctaccatggacatagggagg--------gggaatagggcagatttaaatgccataaagctaatgctgtttttaccaagggccagttgattttctggaataaatgttcctcagattcttgcaagcctttgcttaattgctagagttctggcaaaattta------------tttttctccttttttagtaatattctctc i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19164635 1028 + 50472720 aattacagtgttagctgtgggtgttGTTAGTTTCTTGCTATAGATATGAGgttttttattgagtttcctgaattaattgtgaagagcctga------------------------------------ttttctgtcatgtatacccctcaatatctctgctccgttagcttagtagtcagctaatgacttcacatagatttctttgaatgtgttgaaccagtaagttgatgtcgttttgctgaagggctttgagtgcatgtgtttgaggggaatattttAACCTCCCATTTCAGGGCAGTAATTAAAGATGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAATGAAAATTAACTCAGAGattcaagcatgtagtttaaaaactctacattagccttcatttcctgcttgtgcaaagcctcagagttatccacaggt----gattcgggcc-tcccag-gtc-tttcctgcgcatgtgcacctccctgcaagtgcatatggtcttctagagttccaggaatacgttagatattttcaacattccatatgaaaatcccatcccccaatgttttcttttaacgtttttgctaagtctcttacttaacccaacttg------tgcct----cagcggcacaattgaataattggcactga-ctgatttcaacaaatttctaaaggacagggctgttcataccaaatgagctcctgccttagatttgagtcaattgtcagtga---catcagataaaaacaagccccgagaatgaaagtgctagtgaggtgaatagtgacagttctctagggatggggtttttcaggaactccaaactcgttaacttccttccagtggctcctgggcttctagagtttatagt--------ttgtgtagcttttggttggaaggctaccatggacataggaagg--------gg--atagggaag-attgaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagatttttgcaagcctctgtttaattgctagagttctgacaaagtttac-----------ttttttcccatttttagtagtagtctctc i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2504710 1033 + 13128814 aattacagtgttagctgtgggtgttgttagtttggtgctatagatgcaaggttgtttactgagtttcctgaattaattgtgaagaacctga------------------------------------ttttctgtcaagtatatccctcagtatctctgctccgttagcttagcgatcagctaatgacttcacatagatttctttgaatgtattgaaccagtaagttgatgtcattctgctgaagggctttgagtgcatgtgtttgaggggaatattttaacctcccatttcaggaaaataattaaggatgtgctcattttcttttatcagattagtgctttaaaggttaatgaaaattaactcagagattctagcaggtagtttaaaaactctactttagccttcatttcctgcttgtgcaaagcctcagagttatccacaggt----gattcaggcc-tcccag-gtc-tttcctgcacaggtgcaactccctgcaagtgcatatggtcttctagagttccaggaatacgttagatattttcaacattccacgtgaaaatcccatcccccaatgttttcttttaaagtttttactaagtctcttacttatcccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ctgatttcaacaaatttcttaaggacagggctgttcataccaaatgagctcctgccttagatatgaatcaactgtc-gtcg---catcaggtaaaaacaagccctgagaatgaaagtgctagtgaggtgaatagtgacagttctctagggatggaattttccaggaactccagacccattcacttccttccagtggctcctgggcttctagagtttgcagt--------ttgtgtagcttttggttggaaggctaccatggacatagggagg--------gg--atagggaaa-ttgaaatgccacaaagct--tgctgtttttaccaaggaccagttgattttcttaaataaatgttcctcagatttttgcaagcctttgcttagttgctagagttctgacaaagtttat-----------tttttccccatttttagtagtattctctc i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7042239 1035 - 14377064 aattacagtgttagctgtgggtgttgttagtttgttgccatagatgcgaggttgtttattgagtttcctgaattaatagtgaggagcctga------------------------------------ttttctgtcatgtatacccctcaatatctctgttcagttagcttagtggtcagctaatgacttcacatagatttctttgaatgtgttgaaccagtaagttgatgtcgttttgctgaagggctttgagtgcatgtGTTTGAGGGGAATATTTTAACCTCCCATTTCAGGACAATAATTAAAGATGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAATGAAAATTAACTCAGAGATTCCAGcaggtagtttaaaaactctactttagccttcatttcctgcttgtgcaaagcctcagagttatccacaggt----gattcaggcc-tcccag-gtc-tttcctgcacatgtgcacctccctgcaagtgcatatggtcttctagagttccaggaataagttagatattttcaatgttccatatgaaaatcccatcccccaatgttttcttttaaagtttttgctaagtctctcacttatcccaacttgtgtcactgcct----cagctgcacaattgaataattggcactga-ctgatttcaacaaatttcttaaggacagggctgttcataccaaatgagctcctgccttagatttgagtcaattatcagtca---catcagataaaaacaagccctgagaatgaaagtgctagtgaggtgaatagtgacagttctctagggatggaattttccaggaactccaaacccattcacttccttccagtggctcctggccttctagagtttgcagt--------ttgtgtagcttttgattggaaggctaccatggacatagggagg--------gg--atagggaagattgaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagatttttgcaagcctttgcttaattgctagagttctgacaaagtttat-----------tttttccccatttttagtagtagtctctc i cebCap1.NW_016107322v1 C 0 I 140 s aotNan1.NW_018487195v1 6089905 1041 + 9889416 aattacagtgttagctgtgcgtgttgttagtttgttgctatagatgcgaggttgtttattgagtttcctgaattaattgtgaagagcctga------------------------------------ttttctgtcatgcatacccctcaatatctctgctccgttagcttagtggtcagcaaatgacttcacatagatttctttgaatgtgttgaaccagtaagttgatgtcattttgctgaagggcattgagtgcatgtGTTTGAGGGGAATATTTTAACCTCTCATTTCAGTCCAGTAATTAAAGATGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAATAAAAATTAACTCGGAGATTCCAAcaggtagtttaaaaactctactttagccttcatttcctgcttgtgcaaagcctcagagttatccacaggt----gattcatgcc-tcccag-gtc-tttcctgcgcatgtgca-ctccctgcaagtgcatatggtcttctagagttccaggaatacattagatattttcaacattccatatgaaaagcccatcccccaatgttttcttttaaagtttttgctaagtctcttacttatcccaacttgtgtcactgcct----cagttgcacaattgaataattggcactga-ctgatttcaacaaatttcttaaggacaggactgttcataccaaatgagctcctgccttagatttgagtcaactgtcagtca---catcaggtaaaaacaagccccgagaatgaaagtgctagtgaggtgaatagtgacagttctctagggatgggattttccaggaacttcaaacccattcacttccttccagtggctcctgggcttctagagtttgcagt--------ttgtgtagcttttggttggaaggctaccatgggcatagggagg--------gg--atagggaagattgaaatgccacaaagct--tgctgtttttaccaagggccagttgattttctggaataaatgttcctcagatttttgcaagcctttgcttaattgctagagttctgacaaagtttatttatttatttattttttaccatttttagtagtattc---- i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11466798 962 + 39895921 aattttggtgtccgtgtttggcgttgttattttgttgttatagatgcttgtttgtttattgaatttcctgaatgaattctgtagagcctgaatgctgctgcttcttcttcttcttcttcttcttcttcttcttcttttgtatacagcttagcatcttttttcaattagtttactggtgagctaatgattggacatagatttccttgaatgcattgaaccaagaagtttctctcactttgttgagcggttt-----gtgtgtgtttgggaggaatagtttaat--------------------------------------------------------------------------------------actccagtaggcagttt-aaaacagtaacttaac---cacttcttgcttgtgcagagactcaaaatcatcaccaggtggaagattagagccttctcagtgtc-tttc------------------------------atggccttttagatttccaagaatatcctggatattttcaacatcccacataaaaatttcattccctggcttttcctttacaatactttagcaaatttcttacttaacccagttggtattgccaccttaggcagctgtattactaaacaattggtattgattttcttttggcaaataccttagggacatggctatttacactgagtgag---ctgagtcaagtttgattcagtagtcactta---gtttaaataaaaataaatcctgggaatggaaatacaagacagg-aaatagtaacaattctccagggatggaattttgggggtaa-ccaaatcaattctgttccttccagtggcccccaggttgctggttttcacagttaatgtaattatgtagcttttggtttgaaggttaccacagaaattggatggttggagttgggtatagaacaagtcaaaatgccacaaaact--t--tgtttttaccaaggttcagctatttttcttgaataaatgtttccattatttttgcaaa-ttttgattaatttccagagttctgaaaaagttta------------ttttggccatttttttctagtattc---- i canFam3.chr31 I 8655 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e otoGar3.GL873528 18346897 6716 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=15973.000000 s hg38.chr21_GL383578v2_alt 55681 3 + 63917 tct s panTro5.chr21 893177 3 + 33445071 tct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14577811 3 + 46275980 tct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 489947 3 - 13858734 tct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618271 3 + 32716333 tct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152682864 3 - 185818997 tct i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159490940 3 - 192294377 tct i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5935787 3 + 9440265 tct i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680049 3 + 21915920 tct i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12316749 2 - 90373283 tc- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 658851 3 + 1337817 tct i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628090 2 - 3237654 tc- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19165663 3 + 50472720 tct i calJac3.chr21 C 0 I 127 s saiBol1.JH378168 2505743 3 + 13128814 tct i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043414 3 - 14377064 tct i cebCap1.NW_016107322v1 I 140 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e aotNan1.NW_018487195v1 6090946 0 + 9889416 C e otoGar3.GL873528 18346897 6716 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I e canFam3.chr31 11467760 0 + 39895921 C a score=156339.000000 s hg38.chr21_GL383578v2_alt 55684 24 + 63917 t---tttttttt-tttaatggaggagag s panTro5.chr21 893180 21 + 33445071 t---tttttttt----aatggaggagag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14577814 21 + 46275980 t---tttttttt----aatggaggagag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 489950 21 - 13858734 t---tttttttt----aatggaggagag i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618274 25 + 32716333 t---ttttttttgtttaatggaggagag i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152682867 23 - 185818997 ctc-tttttttt----aatggaggagag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159490943 23 - 192294377 ctc-tttttttt----aatggaggagag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5935790 23 + 9440265 ctc-tttttttt----aatggaggagag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680052 24 + 21915920 ctcttttttttt----aatggaggagag i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12316751 20 - 90373283 ----ttttttct----aatggaggagag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 658854 24 + 1337817 gtcttttttttt----aatggaggagag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628092 20 - 3237654 ----tttttttt----aatggaggagag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19165793 24 + 50472720 tcttcttttttt----aatggaggagta i calJac3.chr21 I 127 C 0 s saiBol1.JH378168 2505746 16 + 13128814 --------ctct----tatggatgagtg i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043417 24 - 14377064 TTTTTTTTTttt----aatggaggagtg i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6090946 23 + 9889416 -tcttttttttt----aatggaggagtg i aotNan1.NW_018487195v1 C 0 C 0 s canFam3.chr31 11467760 22 + 39895921 -tc-attgcttt----tatggaggagtg i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16859639 4922 + 47401472 I e otoGar3.GL873528 18346897 6716 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=382835.000000 s hg38.chr21_GL383578v2_alt 55708 33 + 63917 gatttatggaggtctgcactttgccattCAAA-A s panTro5.chr21 893201 33 + 33445071 gatttatggaggtctgtactttgccattCAAA-A i panTro5.chr21 C 0 C 0 s panPan2.chr21 14577835 33 + 46275980 gatttatgcaggtctgtactttgccattCAAA-A i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 489971 33 - 13858734 gatttatggaggtctgtactttgtcattCAAA-A i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618299 33 + 32716333 gatttatggaggtctgtactctgccattCAAA-A i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152682890 33 - 185818997 gatttatggaggtctgtactctgccattCAGA-A i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159490966 33 - 192294377 gatttatggaggtctgtactctgccattCAGA-A i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5935813 33 + 9440265 gatttatggaggtctgtactctgccattCAGA-A i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680076 33 + 21915920 gatttatggaggtctgtactctgccattCAGA-A i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12316771 33 - 90373283 gatttatggaggtctgtactctgccattCAGA-A i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 658878 33 + 1337817 gatttatggaggtctgtactctgccattCAGA-A i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628112 33 - 3237654 gatttatggaggtctgtactctgccattCAGA-A i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19165817 32 + 50472720 gatttatggaggtctgtactctgccattCATA-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2505762 32 + 13128814 gatttatggaggtctgtactctgccattCATA-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043441 32 - 14377064 gatttatggaggtctgtactctgcccttCATA-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6090969 33 + 9889416 gatttatggaggtctgtactctgccattCATAG- i aotNan1.NW_018487195v1 C 0 I 130 s micMur3.chr31 16864561 33 + 47401472 gatttctggagctctgtactctgccattCAGA-A i micMur3.chr31 I 4922 C 0 s canFam3.chr31 11467782 33 + 39895921 gatatatggatgtctttactttgctattCAGA-A i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e otoGar3.GL873528 18346897 6716 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=3541072.000000 s hg38.chr21_GL383578v2_alt 55741 329 + 63917 GGGTTTCCTATTATAATTTGTATACCA-CCTTA----TAGA----TACCCATGTTCAGGAAAAGTTGAAAAACACTGGTTTTTACagaaaagaagatcaagggccagattctagaaaacacaaaca-----tttaagacc-aggaagaggaggaggagcaagagcttataaataaggcagataaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagtaaaagagaaaagagttttaggaa---tagaataatta-aagctattgaatgctgcctacacagattagaaagttgattg-aaaaatactgatttgaattatctacaaaaaagtcactgaga--ttttttttt s panTro5.chr21 893234 329 + 33445071 GGGTTTCCTATTATAATTTGTATACCA-CCTTA----TAGA----TACCCATGTTCAGGAAAAGTTGAAAAACACTGGTTTTTACagaaaagaagatcaagggccagattctagaaaacacaaaca-----tttaagacc-aggaagaggaggaggagcaagagcttataaataaggcagataaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagtaaaagagaaaagagttttaggaa---tagaataatta-aagctattgaatgctgcctacacagattagaaagttgattg-aaaaatactgatttgaattatctacaaaaaagtcactgaga--ttttttttt i panTro5.chr21 C 0 C 0 s panPan2.chr21 14577868 328 + 46275980 GGGTTTCCTATTATAATTTGTATACCA-TCTTA----TAGA----TACCCATGTTCAGGAAAAGTTGAAAAACACTGGTTTTTACagaaaagaagatcaagggccagattctagaaaacac-aaca-----tttaagacc-aggaagaggaggaggagcaagagcttataaataaggcagataaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagtaaaagagaaaagagttttaggaa---tagaataatta-aagctattgaatgctgcctacacagattagaaagttgattg-aagaatactgatttgaattatctacaaaaaagtcactgaga--ttttttttt i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 490004 329 - 13858734 GGGTTTCCAATTATAATTTGTATACCA-CCTTA----TAGA----CACCCATGTTCAGGAAAAGTTGAAAAGCACTGGTTTTTACagaaaagaagatcaagggccagattctagaaaacacaaaca-----tttaagacc-aggaggaggaggaggagcaagagcttataaataaggcagataaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagtaaaagagaaaagagttttaggaa---tagaataatta-aagctattgaatgctgcctacacagattagaaagttgattg-aaaaatactgatttgaattatctacaaaaaagtcactgaga--ttttttttt i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618332 328 + 32716333 GGGTTTCCTATTATAATTTGTGTGCCA-CCTTA----TAGA----TTCCCATGTTCAGGAAAAGTAGAAAAACACTGGTTTTTACagaaaagaagatcaagggccagattctagaaaacacaaaca-----tttaagacc-aggaagagaaggaggagcaagagcttataaataaggcagataaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaagagttttaggaa---tagaataatta-aagctattgaatgctgcctactcagattagaaagttgattg-aaaaatactgatttgaattatctacaaaaaagtcactgaga---ttttcttt i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152682923 332 - 185818997 GCGTTTGCTATTATAATTTGCATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggtcagattctagaaaacacaaaca-----tttaagacc-cggaagaggaggaggagcaagagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaagagttctaggaa---taggctaatta-aagctattgaatgctgcctacccagattagaaagttgattgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159490999 332 - 192294377 GCGTTTGCTATTATAATTTGCATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggtcagattctagaaaacacaaaca-----tttaagacc-cggaagaggaggaggagcaagagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaagagttctaggaa---taggctaatta-aagctattgaatgctgcctacccagattagaaagttgattgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5935846 332 + 9440265 GCGTTTGCTCTTATAATTTGCATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggtcagattctagaaaacacaagca-----tttaagacc-cggaagaggaggaggagcaagagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaagagttctaggaa---taggctaatta-aagctattgaatgctgcctacccagattagaaagttgattgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680109 332 + 21915920 GCGTTTGCTATTATAATTTGCATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggtcagattctagaaaacacaaaca-----tttaagacc-aggaagaggaggaggagcaagagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaagagttctaggaa---taggataatta-aagctattgaatgctgcctacccagattagaaagttgatcgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12316804 332 - 90373283 GCGTTTGCTATTATAATTTGTATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggtcagattctagaaaacacaaaca-----tttaagacc-aggaagaggaggaggagcaaaagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gctcat-aaaaagcaaaagagaaaagagttctaggaa---taggataatta-aagctattgaatgctgcctacccagattagaaagttgattgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 658911 332 + 1337817 GCGTTTGCTATTATAATTTGCATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggtcagattctagaaaacacaaaca-----tttaagacc-aggaagaggaggaggagcaagagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaatagttctaggaa---taggataatta-aagctattgaatgctgcctacccagattagaaagttgattgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628145 332 - 3237654 GCATTTGCTATTATAATTTGTATACCA-CCTTA----TAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaagggccagattctagaaaacacaaaca-----tttaaggcc-aggaagaggaggaggagcaagagcttataaataaggcagatgaggaatggttctgaaatgaatgg-----------------------------gcttat-aaaaagcaaaagagaaaagagttctaggaa---taggataatta-aagctattgaatgctgcctacccagattagaaagttgattgaaaaaatactgatttgaattatctgctaaaaagtcactgagatatatgttttt i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19165849 313 + 50472720 GGGTTTCCTATTATAATTTGTATACTG-CCTTA----CAGA----TTCCAATGTTCAGGAAAAGCTGAAAAACACTGGTTTCtagagaacagaagatcaa-gtccagagtctagaaaaca-------------caagacc-aggaa------gaggagcaagagcttataaataaggcagataaagaatggcattgagatgaatgg-----------------------------gcttat-acgaagcaaaagaagaaagagttttgggaa---tagaataatta-aagctattaaatgctgcctacacggattagaaaattgattc-aaaaatactgatttgaattatctactaaaaagtcat--agatatat-ttttt i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2505794 311 + 13128814 GGGTTTCCTATTATAATTTGTATACTG-CCTTA----CAga----ttccaatgttcaggaaaggttgaaaaacgctgGTTTTtagagaaaagaagatcaa-gaccagattctagaaaacataaacg-----tttaagact-aggaa------gaggagcaagagcttataaataaggcagataaa---------tgagatgaatgg-----------------------------tcttat-aaaaagcaaaagaag---gagttttaggaa---tataataatta-aagctattaaatgctgcctacacagatcagaaaattaattc-aaaaatactgatttgaattatctattaaaaagtcactgagatatat-ttttt i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043473 324 - 14377064 GGGTTTCCTATTATAATTTGTATACTG-CCTTA----CAga----ttccaatgttcaggaaaagttgaaaaacactgGTTTTtagagaaaagaagatcaa-gaccagattctagaagacacaaaca-----tttaagacc-aggaa------gaggagcaagagcttatcaataaggcagataaggaatggtactgagatgaatgg-----------------------------gcttat-aaaaagcaaaggaagaaagagttttaggaa---tagaataatta-aagctatcaaatgctgcctacacagatgagaaaattgattc-aaaaatactgatttgaattatctactaaaaagtcactgagatatatatattt i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6091132 316 + 9889416 GGGTTTCCTATTATAATTTGTATACTG-CCTTA----CAGA----TTCCAATGTTCATGAAAAGTTGAAAAACACTGGTTTTTagagaa---aagatcaa-gaccagattctagaagacacaaatg-----tttaagacc-aggaa------gaggagcaagagcttataaataaggcagataaggaatggtactgagatgaatgg-----------------------------gcttat-aaaaagcaaaagaaaaaagagttttaggaa---tagaa----ta-aagctattaaatgctacctacacagatcagaaaattgattc-aaaaatactgatttgaattatctacc-aaaagtcactgagatatattttttt i aotNan1.NW_018487195v1 I 130 C 0 s micMur3.chr31 16864594 331 + 47401472 GGGTTTTTAATTAtaatttttaaagct-cctta----taggtagtttccaatgatcaggaaaagttgaaaactaATAGTTTTtagagaaaagaatatcaaaggccagattctagaaaacacaaaca-----tttaaaccctaagaa------gaggaagaggagcttatgaatgaggaggataagaaatgattcagagatggaagg-----------------------------gtttataaaaaaacaaaagaggaaggagttttaggaagattattacaggta-aagctattgaatgcctcctacacagatcagacaatggattg-acaaatactgatttgaattatctactaagaggtcacacagat-tattttt-- i micMur3.chr31 C 0 C 0 s canFam3.chr31 11467815 357 + 39895921 ATATTTTCTATGAGAATTTAAAAAAAATCCTTATGTCTAGT----TTCTAATATTCAGGCAAAGTTGAAACACACTGGTTATTagagaa---aggttcaatggtcaggttctagaaaacacaagcatttactttaagatc-aggaaga-------gaacaagggactatgaatgagtcagataaagactggttcagagatggatggaacttacaaaacacaaaaaagtggatggaacttat-aaaaaacaaaaaagaaaggagttttaggaa---gagaatagtcagaagttagtgaatattg-ctacatagctgagaaaatggtttg-aaaactactgatttaactgatctactaagaggtcattgtgatctttgtt--- i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e otoGar3.GL873528 18346897 6716 - 38779656 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=1401011.000000 s hg38.chr21_GL383578v2_alt 56070 139 + 63917 agaacaacttcagtggagtgatgggg-cagaatcctgactacagttaagttgttacataaataggaggttaa-aaaagagaaaataattataggtaactcggaaggagccggactgagaaaggaaggggagagaatatag-------g s panTro5.chr21 893563 139 + 33445071 agaacaacttcagtggagtgatgggg-cagaatcctgactacagttaagttgttacataaataggaggttaa-aaaagagaaaataattataggtaactcggaaggagccggactgagaagggaaggggagagaatatag-------g i panTro5.chr21 C 0 C 0 s panPan2.chr21 14578196 139 + 46275980 agaacaacttcagtggagtgatgggg-cagaatcctgactacagttaagttgttacataaataggaggttaa-aaaagagaaaataattataggtaactcggaaggagccggactgagaagggaaggggagagaatatag-------g i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 490333 139 - 13858734 agaacaacttcagtggagtgatgggg-cagaatcctgactatagttaagttgttacataaataggaggttaa-aaaagagaaaataattataggtaactcagaaggagctggactgagaagggaaggggagagaatatag-------g i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618660 138 + 32716333 agaacaactttagtggagtgatgggg-cagaatcctgactatag-taagttgttacataaatgggaggttaa-aaaagagaaaataattataggcaactcggaaggagctggactgagaagggaaggagagataatatag-------g i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152683255 145 - 185818997 agaacaatttcagtgaagtgatgggg-cagaaccctgactttag-taagttgttacataaatgggaggttaa-aaaagggaaaagaattataggcagctcagaaggaactggactgagaagggaaggagagataatataggcccgtag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159491331 145 - 192294377 agaacaatttcagtgaagtgatgggg-cagaaccctgactttag-taagttgttacataaatgggaggttaa-aaaagggaaaagaattataggcagctcagaaggaactggactgagaagggaaggagagataatataggcccgtag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5936178 145 + 9440265 agaacaatttcagtgaagtgatgggg-cagaaccctgactttag-taagttgttacataaatgggaggttaa-aaaagggaaaagaattataggcagctcagaaggaactggactgagaagggaaggagagataatataggcccgtag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680441 145 + 21915920 agaacaatttcagtggagtgatgggg-cagaaccctgactttag-taagttgttacataaatgggaggttaa-aaaagggaaaagaattataggcagctcagaaggaactggactgagaagggaaggagagataatataggcccatag i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12317136 145 - 90373283 agaacaatttcagtggagtgatgggg-cagaaccctgactttag-taagttgttacataaatgggaggttaa-aaaagggaaaagaattataggcagctcagaaggaactggactgagaagggaaggagagataatataggcccgtag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 659243 145 + 1337817 agaacaattttagtggagtgatgggg-cagaaccctgactttag-taagttgttacataaatgggaggttaa-aaaagggaaaagaattataggcagctcagaaggcactggactgagaagggaaggagagataatataggcccgtag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628477 145 - 3237654 agaacaatttcagtggagtgatgggg-cagaaccctgactttag-taaggtattacataaatgggaggttaa-agaagagaaaagaattataggcagctcagaaggaactggactgagaagggaaggagagataatataggcccgtag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19166162 112 + 50472720 agatgaattttggtggaatgatggagacagaatcctgactatag-taagttgttatataaacgggaggttaa-gaaagagaaagta--------------------------gctggaaagggaagtagagataatataa-------- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2506105 120 + 13128814 agatgaattttggtggaatgatggggacagaatcctgactataa-taagttcttatataaatgggaagttaa-gaaagagaaagta--------------------------gttggaaagggaaggagaaataatatagacccgtag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043797 120 - 14377064 agatgaattttggtggaatgatggggacagaatcctgactatag-taagttgttatataaacggaaggttaa-gaaagagaaagta--------------------------gctggaaagggaaggagagataatatagacctgtag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6091448 120 + 9889416 agatgaattttggtggaatgatggggacagaatcctgactatag-taagttgttatataaacgggaggttaa-gaaagagaaagta--------------------------gctggaaagggaaggagagataatatagacccgtag i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16864925 138 + 47401472 agagcaactgcagtggaatggcaggg-ctgaatcctgactgtag-taagttgttacacaaataggaggctaa-aagagagaaaacaagtttaggcaactctgaaagaactgggctacttaggaaaagagagataatatagg------- i micMur3.chr31 C 0 I 32 s otoGar3.GL873528 18353613 136 - 38779656 aGAACATTTGTAGTGGAAAGGTGGGG-CAGAAACCTCACTGTAG-TAAGTTGTTATATAAATGGGGGGTTAACAAAAGAGAA---AAGTTTAGGTGACTTTGGAAGAACTGTGCTATTTGGGAAAGGAGAGATAATATAGG------- i otoGar3.GL873528 I 6716 I 1 s canFam3.chr31 11468172 132 + 39895921 agagcaattgcaatggaatggtgaga-cagaatcttaattgcag-catgttgtgacataaatgggagg-taa-aaaagagaaaaccagtttagg-----ctgaagaaactgggctaggaacaaaaggtgagataatatagg------- i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=295018.000000 s hg38.chr21_GL383578v2_alt 56209 27 + 63917 ------ctggaacaagacatgaagtaaagaaag s panTro5.chr21 893702 27 + 33445071 ------ctggaacaagacatgaagtaaagaaag i panTro5.chr21 C 0 C 0 s panPan2.chr21 14578335 27 + 46275980 ------ctggaacaagacatgaagtaaagaaag i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 490472 27 - 13858734 ------ctggaacaagacatgaagtaaagaaaa i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618798 27 + 32716333 ------ctggaacaagacatgaagtaaagaaag i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152683400 27 - 185818997 ------ctggaacaagacacgaagtaaagaaag i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159491476 27 - 192294377 ------ctggaacaagacacgaagtaaagaaag i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5936323 27 + 9440265 ------ctggaacaagacgcgaagtaaagaaag i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680586 27 + 21915920 ------ctggaacaagacacgaagtaaagaaag i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12317281 27 - 90373283 ------ctggaacaagacacgaagtaaagaaag i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 659388 27 + 1337817 ------ctggaacaagacacgaagtaaagaaag i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628622 27 - 3237654 ------ctggaacaagacacgaagtaaagaaag i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19166274 26 + 50472720 -------tggaacaggacatgaagtaaagaaag i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2506225 27 + 13128814 ------ctggaatgggacatgaagtaaagaaag i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043917 27 - 14377064 ------ctggaacgggacatgaagtaaagaaag i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6091568 27 + 9889416 ------ctggaacaggacatgaagtaaagaaag i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18353750 27 - 38779656 ------TAGAAGTTGGATAAGGCATCAGAAGAG i otoGar3.GL873528 I 1 C 0 s canFam3.chr31 11468304 33 + 39895921 ctatagttggaatacaatatggagtcaaaaaag i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16865063 32 + 47401472 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=1686278.000000 s hg38.chr21_GL383578v2_alt 56236 134 + 63917 TTGCATTCTCCCAGGGCTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGTATCTGTTCTAGACCATAGGGCTACCACTAGTCATTTGGACTTGTGGGTGAGGAGAGTGACCTTTCTCCCATT s panTro5.chr21 893729 134 + 33445071 TTGCATTCTCCCAGGGCTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGCATCTGTTCTAGACCATAGGGCTATCACTAGTCATTTGGACTTGTGGGTGAGGAGAGTGACCTTTCTCCCATT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14578362 134 + 46275980 TTGCATTCTCCCAGGGCTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGCATCTGTTCTAGACCATAGGGCTATCACTAGTCATTTGGACTTGTGGGTGAGGAGAGTGACCTTTCTCCCATT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 490499 133 - 13858734 ttGCATTCTCCCAGGGCTCAGTTTAACTGCTCTATTTATTATTCATAAATTTT-TTTTTGGCGTCTGTTCTAGACCATAGGGCTATCACTAGTCATTTGGACTTGTGGGTGAGGAGAGTGACCTTTCTCCCATT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618825 133 + 32716333 TTGCGTTCTCCCAGGGCTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGCATCTGTTCTAGACCATAGGGCTATCACTGGTCATTTGGACTTGCGGGTGAGGAGAGTGACCTTTCTCCCA-T i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152683427 134 - 185818997 ttgtgttctCCCAGGGTTCAGTTAAACTGCTCTATTTATTATTCATAAGTTTTCTTTTTGGCATCTCTTCTAGACCGTAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAGAGTGACCTTTCTTCCATT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159491503 134 - 192294377 TTGTGTTCTCCCAGGGTTCAGTTAAACTGCTCTATTTATTATTCTTAAGTTTTCTTTTTGGCATCTCTTCTAGACCGTAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAGAGTGACCTTTCTTCCATT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5936350 134 + 9440265 ttgtgttctCCCAGGGTTCAGTTAAACTGCTCTAGTTATTATTCATAAGTTTTCTTTTTGGCATCTCTTCTAGACCGTAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAGAGTGACCTTTCTTCCATT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680613 133 + 21915920 ttgtgttctCCCAGGGTTCAGTTAAACTGCTCTA-TTATTATTCATAAGTTTTCTTTTTCGCATCTCTTCTAGACCGTAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAGAGTGACCTTTCTTCCATT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12317308 134 - 90373283 TTGTGTTCTCCCAGGGTTCAGTTAAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGTGTCTCTTCTAGACCATAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAAAGTGACCTTTCTTCCATT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 659415 134 + 1337817 ttgtgttctCCCAGGGTTCAGTTAAACTGCTCTATTTATTATTCATAAGTTTTCTTTTTGGCATCTCTTCTAGACCGTAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAGAGTGACCTTTCTTCCATT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628649 134 - 3237654 ttgtgttctCCCAGGGTTCAGTTAAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGCATCTCTTCTAGACCATAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGAAGAGTGACCTTTCTTCCATT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19166300 134 + 50472720 TTGCATTCTCCCAGGGTTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGCCTCTATTCTAGACCATAGGGCTATCACTAGTGATTTGGACCTGTGGGTGAGGAGAGTGACCTTTCTCCCATT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2506252 134 + 13128814 TTGCATTCTACCAGGGTTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTTTTGGCCTCTATTCTAGACCATAGGGCTATCACTAGTGATTTGGACTTGTGGGTGAGGAGGGTGACCTTTCTCCCATT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7043944 134 - 14377064 TTGCATTCCCCCAGGGTTCAGTTTAACTGCTCTATTTATTATTCATAAATTTTCTTATTGGCCTCTATTCTAGATCATAGGGCTATCACTAGTGATTTGGACTTGTAGGTGAGGAAAGTGACCTTTCTCCCATT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6091595 132 + 9889416 TTGCATTCTCCCAGGGTTCAGTTTAACTGCTCTATTTATTATTCATAA--TTTCTTTTTGACCTCTATTCTAGACCATAGGGCTATCACTAGTGATTTGGACTTGTAGGTGAGGAGAGTGACCTTTCTCCCATT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16865095 134 + 47401472 ttGCATTCTCTCAGGGTTCAGTTTAACTGCTTTACTTATTATTCACAAATTTCCATTTTGTCCTCTGTCCTAAACCATAGGTCCATCACTAGTGACTTGGACTTGGGAGTGAGCAGGGTGACCTTTCTCCCATT i micMur3.chr31 I 32 I 839 s otoGar3.GL873528 18353777 112 - 38779656 TCACGTACTCCCA-GGTTCTGTTTAACTGCTATATTTATTATCCACAAATTTCCTTTT---------------------GGGAATTCACTAGTGACTTAGACTTTGGGATGAGGAGGGTGACATTTCTCCCATT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11468337 129 + 39895921 TTGCTTTGTCCCAGGGATCATTTTAA----TTTACTCA-TATTCACAAAATTTTCCTTTGGTCTCTATTCTAGACCATAGGGCCATACCTAGTGGCTTGTATTTGGGGATAAGAAAGGTGACTTTTCTTCCATT i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=5344326.000000 s hg38.chr21_GL383578v2_alt 56370 484 + 63917 ATGTAATGAAGAAATGTAATCCTAAA--TATTAGTCATGGCTCTAAACAGATTCTCAATGAAAT-GGTGGCGACAAATAATAAC--TGGACCTATGAggggcagtagactgaagcatgcatgaagtctgagaaaactgagattaaatccctgcttcaccaccctgctggtgctagctgtatgaccttgacctaaaattacttaggctctcttgactttgctttcctcatgtgaataataacactaatcatt-caagattgtcat-gtgggttaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagagttagctttttaatatctccattttctcatctgtaaaa-taaaaaagttgggttatataatcttcatgcttcttttcaactttaac-tatatga-GCTTCCAATTTCTTTTAGTTCAGAGctattcttcatgtactttgtgggct s panTro5.chr21 893863 486 + 33445071 ATGTAATGAAGAAATGTAATCCTAGACATATTAGTCATGGCTCTAAACAGATTCTCAATGAAAT-GGTGGCGACAAATAATAAC--TGGACCTATGAggggcagtagactgaagcatgcatgaagtctgagaaaactgagattaaatccctgcttcaccaccctgctggtgctagctgtatgaccttgacctaaaattacttaggctctcttgactttgctttcctcatgtgaataataacactaatcatt-caagattgtcac-atgggttaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagagttagctttttaatatctccattttctcatctgtaaaa-taaaaaagttgggttatataatcttcatgcttcttttcaactttaac-tatatga-GCTTCCAATTTCTTTTAGTTCAGAGctattcttcatgtactttgtgggct i panTro5.chr21 C 0 C 0 s panPan2.chr21 14578496 486 + 46275980 ATGTAATGAAGAAATGTAATCCTAGACATATTACTCATGGCTCTAAACAGATTCTCAATGAAAT-GGTGGCGACAAATAACAAC--TGGACCTATGAggggcagtagactgaagcatgcatgaagtctgagaaaactgagattaaatccctgcttcaccaccctgctggtgctagctgtatgaccttgacctaaaattacttaggctctcttgactttgctttcctcatgtgaataataacactaatcatt-caagattgtcac-gtgggttaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagagttagctttttaatatctccattttctcatctgtaaaa-taaaaaagttgggttatataatcttcatgcttcttttcaactttaac-tatatga-GCTTCCAATTTCTTTTAGTTCAGAGctattcttcatgtactttgtgggct i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 490632 486 - 13858734 ATGTAATGAAGAAATGTAATCCTAGACATATTAGTCATGGCTCTAAACAGATTCTCAATGAAAT-GGTGGCGACAAATAATAAC--TGGACCTATGAggggcagtagactgaagcatgcatgaagtctgagaaaactgagattaaatccctgcttcaccaccctgctggtgccagctgtatgaccttgacctaaaattacttaggctctcttgactttgctttcctcgtgtgaataataacactaatcatt-caagattgtcgt-gcgggttaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagagttagctttttaatatctccattttctcatctgtaaaa-taaaaaagttgggttatataatctttatgcttcttttcaactttaac-tatatga-GCTTCCAATTTCTTTTAGTTCAGAGctattcttcatgtactttgtgggct i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1618958 486 + 32716333 ATGTAATGAAGAAATGTAATCCTAGACATATAAGTCATGGCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGACCTATGAggggcagtagattgaagcatgcatgaagtctgagaaaactgagattaaatccccacttcaccaccctactggtgctaggtgtacgaccttgacctaaaattacttaggctctcttgactttgctttcctcgtgtgaatagtaacactaagcatt-caagattgtcgt-atgggttaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctttgttagaatggaagagttagctttttaatatctcaattttctcatctataaaa-taaaaaagttgggttatataatctttacgcttcttttcaactttaac-tatatga-GCTTCCAATTTCTTTTAGTTCGGAGctattcttcatgtactttgtgggct i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152683561 484 - 185818997 ACGTAATGAAGAAATGTAATCCCAGACATATTAGTTGTGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGATCTATGAggggcagtagactgaagcatgcataaagtctgagaaaactgagattaaatccccgcttcaccaccctactggtactagttgtatgaccttgacc--aaattacttatgctctcttgactatgctttccttgtgtgaataataatactactcatt-caagattgtcgt-gtaggttaatttggacaatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagaattagctttttaatatctccattttctcatctataaaa-taaaaaagttggtttatatactctttatgcttcttttcaactttaacTTATCTGA-GCTTCCAATttc-tttagttcagtgctatgcttcttgtactttgtggact i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159491637 484 - 192294377 ACGTAATGAAGAAATGTAATCCCAGACATATTAGTTGTGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGATCTATGAggggcagtagactgaagcatgcataaagtctgagaaaactgagattaaatccccgcttcaccaccctactggtactagttgtatgaccttgacc--aaattacttacgctctcttgactatgctttccttgtgtgaataataatactaatcatt-caagattgtcgt-gtaggttaattgagacaatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagaattagctttttaatatctccattttctcatctataaaa-taaaaaagttggtttatatactctttatgcttcttttcaactttaacttatatga-GCTTCCAATttc-tttagttcagtgctatgcttcttgtactttgtggact i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5936484 484 + 9440265 ACGTAATGAAGAAATGTAATCCCAGACATATTAGTTGTGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGATCTATGAggggcagtagactgaagcatgcataaagtctgagaaaactgagattaaatccccgcttcaccaccctactggtactagttgtatgaccttgacc--aaattacttacgctctcttgactatgctttccttgtgtgaataataatactaatcatt-caagattgtcgt-gtaggttaattgagacaatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagaattagctttttaatatctccattttctcatctataaaa-taaaaaagttggtttatatactctttatgcttcttttcaactttaacttatatga-GCTTCCAATttc-tttagttcagtgctatgcttcttgtactttgtggact i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5680746 484 + 21915920 ACGTAATGAAGAAATGTAATCCCAGACATATTAGTTGTGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGATCTATGAggggcagtagactgaagcatgcataaagtctgagaaaactgagattaaatccccgcttcaccaccctactggtactagttgtatgaccttgacc--aaattacttacgctctcttgactatgctttccttgtgtgaataataatactaatcatt-caagattgtcgt-ataggttaattgagacaatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagaattagctttttaatatctccattttctcatctataaaa-taaaaaagttggtttatatactctttatgcttcttttcaactttaacttatatga-GCTTCCAATttc-tttagttcagtgctatgcttcttgtactttgtggact i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12317442 484 - 90373283 ACATAATGAAGAAATGTAATCCCAGACATATTAGTCATGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGATCTATGAggggcagtagactgaagcatgcatgaagtctgagaaaactgagattaaatccccgcttcaccaccctactggtactagttgtatgaccttgacc--aaattacttaggctctcttgactttggtttcctcgtgtgaataataatactaatca-t-caagattgtcgt-gtaggttaattgagacaatgcCCAGTCTTGGCAATTAAGAGAACtcccagttctgcctcttggatgctgtgttaggatggaagaattagctttttaatatctccattttctcatctataaaa-caaaaaagttggtttatataatctttatgcttcttttcaactttaacttatatga-GCTTCCAATTTCTTTTAGTtcagtgctatgcttcatgtactttgtgggct i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 659549 484 + 1337817 ACGTAATGAAGAAATGTAATCCCAGACATATTAGTTGTGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAATAAC--TGGATCTATGAggggcagtagactgaagcatgcataaagtctgagaaaactgagattaaatccctgcttcaccaccctactggtactagttgtatgaccttgacc--aaattacttacgctctcttgactatgctttccttgtgtgaataataatactaatcatt-caagattgtcat-gtaggctaattgagacaatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctcttggatgctgtgttagaatggaagaattagctttttaatatctccattttctcatctataaaa-taaaaaagttggtttatatactctttatgcttcttttcaactttaacttatatga-GCTTCCAATttc-tttagttcagtgctatgcttcatgtactttgtggact i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 628783 485 - 3237654 ATGTAATGAAGAAATGTAATCCCAGACATATTAGTCATGCCTCTAAACAGATTCTCAATGAAAT-GGTGGTGACAAATAACAAC--TGGATCTATGAggggcagtagactcaagcatgcatgaagtctgagaaaactgagattaaatccccgcttcaccaccctactggtactagttgtaagaccttgacc--aaattacttaggctctcctgactttgctttcctcatgtgaataataatactaatcatt-caagattgtcgt-ataggttaattgagacaatgcCCAGTCTTGGCAGTAAAGAGAACTCCTAGTTCTGCCTCTTGGATGCTGTGTTAGAATGGAAGAGTTAGCTTTTTAATATCTCCATTTTCTCATCTATAAAA-TAAAAAAGTTGGGTTATATAATCTTTATGCTTCTTTTCAACTTCAACTTATATGA-GCTTCCAATTTCTTTTAGTtcagtgctattcttcatgtactttgtgggct i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19166434 485 + 50472720 ATATAATGAAGAAATATAATCTTAGACATATTAGTCATGCCTCTAATCAGATTCTCAATGAAAG-AATGGTGACAAATAATAAC--TAGATCTATGAAGGgcagtagactgaagcatgaataaagtctgagaaaactgagattaaatccc-actttaccacgctactggtactagctgtatgaccttgacc--aaattacttggactctcttgactttgctttcctcatatgaataataatgctaattatt-taagattgtcat-gggggtcaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctacctcttggatgctgcattagaatggaagagttagctttctaatatctccattttctcatctataccattaaaagagttaggttatataatctttatgcttcttttcaactttttc-tatATGAGGCTTCCAGTTTCTTTTAGTTGagtactattcttcatgcactttgtgggct i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2506386 478 + 13128814 ATATAATGAAGAAATGTAATCCTAGACATATTAGTCATGCCTCTAAACAGATTCTCAATGAAAACAGTGGTGAGAAATAATAAC--TAGATCTATGAAGGgcagtagactgaagcatgaataaagtctgagaaaactgagattaaatccc-actttaccacgctactggtactagctgtatgaccttgacc--aaattacttggactctcttgactttgctttcctcatgtgaataataatgctaatcatt-caagattgtcat-ggaggtcaattgagataatgcCCAGTCTTGGCAATAAAGAGAAA----AGTTCTGCCTCTCGGATGCTGCATTAGAATGGA--AGttagctttctaatatctcccttttctcatctgtaccattaaaagagttagattatataatctttatacttcttttcaactttATC-TATACGAAGCTTCCAATTTCATTTAGTTGagtacta--cttcatgcactttgtgggct i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044078 485 - 14377064 ATATAATGAAGAAATGTAATCCTAGACATATTAGTCATGGCTCTAGACAGATTCTCAATGAAAC-AGTGGTGACAAATAATAAC--TAGATCTATGACGGgcagtagactgaagtatgaataaagcctgagaaaactgagattaaattcc-actttaccacgctactggtactagctgtatgaccttgacc--aaattacttggactctcttgactttgccttcctcatgtgaataataatgctaatcatt-caagattgtcat-gggggtcaattgagataatgcCCAGTCTTGGCAATAAAGAGAACtcctagttctgcctctcagatgctgcattagaatggaagagttagctttctaatatttccattttctcatctataccattaaaagagttaggttatataatctttatgcttcttttcaactttATC-TATATGAGACTTCCAATTTCTTTTAGTtcagtactattcttcatgcactttgtgggct i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6091727 484 + 9889416 ATATAATGAAGAAATGTAATCCTAGACATATTAGTCATGCCTCTAAACAGATTCTCAATGAAAC-AGTGGTAACAAATAATAAC--TAGATCTATGAAGGgcagtagactgaagcatgaataaagtctgagaaaactgagattaaatccc-actttaccatgctactggtactagctgtatgaccttgacc--aaattactttgactttcttgactttgctttcctcatgtgaataataatgctaatcatt-caagattgtcatggggggtcaattgagataatgcCCAGTTCTGGCAATAAAGAGAACtcctagctctgcctctcggatgctgcattagaatggaagagttagctttctaatatctccattttctcatctataccattaaaagagtaaggttatataatctttatgcttcttttcaactttatc-tat--gaGGCTTCCAATTTCTTTTAGTTGagtgctattcttcatgcactttgtgggct i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18353889 482 - 38779656 GTATAAAAAAAAAATGTGATCGGAGACAGATAAATCATGCTTCTAAACAGTGTTTCACTGAAAC-TAT-ATGATAACTAATTG---TGGATCTAcgcagtacagtggactgaaacatgtatacagtctgagaaaatggaaattaaatctcagtttcacccttctactggtaccagatatatggccttgacc--aaattacatggattctctcagcttcactttcctcacatagataagaatactaatttttccaaggtcgttat-gtgggttagttgagataatgcCCAGACTAGGCAGTAAAGAGAAATCCTATTTTTGCCTGTTATGAGTCATATGAGGATGAAAGAGTTACCTTTTTAATAGTTCTGTTTTCTCATGTATAAAA-TAAAATATTGAGGTTATATAATTTCTATGCTGCTTGCCAGATCTTAC-CAAATG--GCCTCTACTATCTTTTAGCTCAGTCCTATTATTCACATAGTTTGCGAGCT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11468466 452 + 39895921 GTATGGGAAAGAAATGGGATCCTACATAGATAAATAGTACCTCTACACAGATTCTCAATTAAAC-TGT-----------ATGGCTGTGGCTTTgtgagggacagtgg-ctggaacatatgtaaaatctgagaaaactcagatgaaatcccagctctattgctttactggtgctagctgcatgaccttagca--aaattactt-ggctctttcagcctcatttctctcatatggataataataccaatattt-caagattgtcgt-gtggattaatttatataatacCTAGGTTTTATAATAAAGAAGA------------------GGATgctatatgaggatgaaaaagttagccttttaat--ctcagttttctcacctatgata-caaaagagttgtgttatatcatctccatgctgccttccagctctaac-CAAGTGG-GCCTCCAATATTTTTTCa-tcagtactattcttcatgtactttgtggact i canFam3.chr31 C 0 C 0 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16865229 839 + 47401472 I e dasNov3.JH568778 660269 11684 - 6883506 I a score=873289.000000 s hg38.chr21_GL383578v2_alt 56854 69 + 63917 agatagatatttcgagttggcctaggacttaaaccattctgtagatgacagtttccactggaaaaggc-------a s panTro5.chr21 894349 68 + 33445071 agatagatatttcgagttggcctaggacttaaaccattctgtagatgacagtttccactg-aaaaggc-------a i panTro5.chr21 C 0 C 0 s panPan2.chr21 14578982 68 + 46275980 agatagatatttcgagttggcctaggacttaaaccattctgtagatgacagtttccactg-aaaaggc-------a i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491118 69 - 13858734 agatagatattttgagttggcctaggacttaaaccattctgtagatgacagtttccactggaaaaggc-------a i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619444 69 + 32716333 agatagatatttcgagttggcctaggacttgagccattctgtagatgacagtttccaccagaaaaggc-------a i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684045 69 - 185818997 aaatagatatttcgagttggcctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492121 69 - 192294377 aaatagatatttcgagttggcctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5936968 69 + 9440265 aaatagatatttcgagttggcctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681230 69 + 21915920 aaatagatatttcgagttggcctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12317926 69 - 90373283 agatagatatttcgagttggcctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660033 69 + 1337817 aaatagatatttcgagttggcctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629268 69 - 3237654 agatagatatttcgagttggtctaggacttaaaccattctgtagatgatagtttccaccagaaaaggc-------a i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19166919 69 + 50472720 agatagatatttggagttggcctgggacttaaaccaatctatagatgacagtttctactagaaaaggc-------a i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2506864 69 + 13128814 aaatagatatttggagttggcccgggacttaaaccaatctatagatgacagtttctactagaaagggc-------a i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044563 69 - 14377064 agatatatatttggagttggcctgggacttaaaccaatctatagatgacagtttccactagaaaaggc-------a i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092211 69 + 9889416 agatagatatttggagttggcctgggacttaaacaaatctatagatgacagtttccactagaaaaggc-------a i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18354371 76 - 38779656 AGATAGATACTTAAAGTTGGTCTGGAACTTAACACATTCTGTATATGATAGTTTCCATCAGCAAAGATATTTAAAA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11468918 69 + 39895921 agataggtatttggaattggttgataacttcaaccattctgtgtaagatagtttccattagaaaagac-------a i canFam3.chr31 C 0 I 7 s dasNov3.JH568778 671953 69 - 6883506 AGATAGAGAtttggagttagtctgggactcaatccattctttgtaggatggtttccattagaaaaagc-------a i dasNov3.JH568778 I 11684 I 7 e mm10.chr16 75837511 4845 + 98207768 I e micMur3.chr31 16865229 839 + 47401472 I a score=1453036.000000 s hg38.chr21_GL383578v2_alt 56923 119 + 63917 ttccaaagaattgacttac----aaactgtggaagacagctctgccaagctgggTAGTAGTTTT-AAATAGATGGGCTTA-ACCTAG-----------GATATATAATAG----AAAGGGCTCACCAATGCATAGTTCAA s panTro5.chr21 894417 119 + 33445071 ttccaaagaattgacttac----aaactgtggaagacagctctgccaagctgggTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AAAGGGCTCACCAATGCATAGTTCAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579050 119 + 46275980 ttccaaagaattgacttac----aaactgtggaagacagctctgccaagctgggTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AAAGGGCTCACCAATGCATAGTTCAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491187 119 - 13858734 ttccaaagaactgacttac----aaacTGTGGAAGATAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AAAGGGCTTACCAATGCATAGTTCAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619513 119 + 32716333 ttccaaagaattgacttac----aaacTGTGGAAGATAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AAAGAGCTCACCAATGCATATTTCAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684114 122 - 185818997 ttccaaagaattgacttacaaataaactgtggaaGGTAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATACATAATAG----AGA-AGCTCACCAATGCATATTTCAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492190 122 - 192294377 ttccaaagaattgacttacaaataaactGTGGAAGGTAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATACATAATAG----AGA-AGCTCACCAATGCATATTTCAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937037 122 + 9440265 ttccaaagaattgacttacaaataaactgtggaaGGTAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATACATAATAG----AGA-AGCTCACCAATGCATATTTCAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681299 122 + 21915920 ttccaaagaattgacttacaaataaactgtggaaGGTAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATACATAATAG----AGA-AGCTCACCAATGCATATTTCAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12317995 122 - 90373283 tttcaaagaattgacttacaaataaactgtggaaGGTAGCTCTGCCAAGCTAGATACTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATACATAATAG----AGA-AGCTCACCAATGCATATTTCAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660102 122 + 1337817 ttccaaagaattgacttacaaataaactgtggaaGGTAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATACATAATAG----AGA-AGCTCACCAATGCATATTTCAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629337 133 - 3237654 ttccaaagaattgacttacaaataaactgtggaaGGTAGCTCTGCCAAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAGGATATATAATAGATATATAATAG----AGA-AACTTACCAATGCATATTTCAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19166988 123 + 50472720 ttccaaagaattggcttacaaataaactgtggaagatagctcTGCCAACCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AGAGTGCTCACCAATGCATATTTCTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2506933 123 + 13128814 ttccaaagaattgacatacaaataaactgtggaagatagctcTGCCTAGCTGGGTAGTAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AGAGTGCTCACCAATGCGTATTTCCG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044632 122 - 14377064 ttccaaagaattgacttacaaataaactgtagaagatagctct-ccaagctgggTAGTAGTTTT-AAATAGAAGGGCTCA-ACCTAG-----------AATATATAATAG----AGAGTGCTCATCAATGCGTATTCCCG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092280 123 + 9889416 ttccaaagaattgacttacaaataaactgtggaagatagctctgccaagctgggTAATAGTTTT-AAATAGATGGGCTCA-ACCTAG-----------GATATATAATAG----AGTGCGCTCACCAATGCATATTTCCG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18354447 125 - 38779656 TTTTAAAGACTGGGCTTCCAAATAAACTTTGGAAGGTCACTTTGTCAATTTGGGTAGTACTGGT-AAATGGATAGGCTCA-TCCCAG-----------AACATGTAATAGCACTCAAGCACTCACCAGTGTCTTCTAC-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75842356 117 + 98207768 TTTCAAGCAAACAACCTACAAGTGCACTTCAGAAGACATCTCTGCCTAACTGGAGAGGCCCTTC-AAATGGATGCGCTTATTTCCAC-----------GTCGTACAAGAG----AA--TGCTCGCTAAGGATTAC----- i mm10.chr16 I 4845 C 0 s canFam3.chr31 11468994 122 + 39895921 ttccaagggattgacttacaaataaatt-tgaaggatagctttgctgagctggggTGTACTTTT-AAATAGATGAGCTCA-TCCCAG-----------GACATATAATAG----AGAGCACTCAGCAAGGCATATTTTAG i canFam3.chr31 I 7 C 0 s dasNov3.JH568778 672029 123 - 6883506 ttccaaataattgacttacaaatatattttggtatatatccctgctcaattggggagtacTCTTAAAATAGATGGTCTTA-TCACAA-----------GACATGTAATGG----AGAGCATTCTCCAAGACAGTTTTAG- i dasNov3.JH568778 I 7 C 0 e micMur3.chr31 16865229 839 + 47401472 I a score=798112.000000 s hg38.chr21_GL383578v2_alt 57042 58 + 63917 ATCCTTTAGAAATGAGCTTTGAAGAGAGGGGCAAGTGGCATAATATCAGATTTCAAAG s panTro5.chr21 894536 58 + 33445071 ATCCTTTAGAAATGAGCTTTGAAGAGAGGGGCAAGTGGCATAATATCAGATTTCAAAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579169 58 + 46275980 ATCCTTTAGAAATGAGCTTTGAAGAGAGGGGCAAGTGGCATAATATCAGATTTCAAAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491306 58 - 13858734 ATCCTTTAGAAATGAGCTTTGAAGAGAGGGGCAAGTGGCATAATATCAGATTTCAAAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619632 55 + 32716333 ATCCTTTAGAAATGAGCTTTGAAGAGAGGTGCAAGTGGC---ATATCAGACCTCAAAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684236 58 - 185818997 ATCCTTTAGAAATGAGCTTAGAAGAGAGGCACAAGTGGCATAAAATCAGATTTCAAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492312 58 - 192294377 ATCCTTTAGAAATGAGCTTAGAAGAGAGGCACAAGTGGCATAAAATCAGATTTCAAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937159 58 + 9440265 ATCCTTTAGAAATGAGCTTAGAAGAGAGGCACAAGTGGCATAAAATCAGATTTCAAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681421 58 + 21915920 ATCCTTTAGAAATGAGCTTAGAAGAGAGGCACAAGTGGCATAAAATCAGATTTCAAAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318117 58 - 90373283 ATCCTTTAGAAATGAGCTTTGAAGAGAGGCACGAGTGGCATAAAATCAGATTTCAAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660224 58 + 1337817 ATCCTTTAGAAATGAGCTTACAAGAGAGGCACAAGTGGCATAAAATCAGATTTCAAAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629470 58 - 3237654 ATCCTTTAGAAATGAGCTTTGAAGAGAGGCACAAGTGGCATAAAATCAGATTTCAAAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167111 57 + 50472720 ATCCTTTAGAAATGAGCTTTGAAGACA-GCACAACTGGTGTAATATCAGATCCCAAAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507056 57 + 13128814 ATCCTTTAGAAATAAGCTTTGAAGACA-GCACAACTGATGTAATATCAGATCCCAAAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044754 57 - 14377064 ATCCTTTAGAAATGAGCTTTGAAGACA-GCACATCTGATGTAATATCAGATCCCAAAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092403 57 + 9889416 ATCCTTTAGAAATGAGCTTTGAAGACA-GCACAACTGGTGTAATATCACATCCCAAAG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16866068 58 + 47401472 ATCCTTTAGAAATGAGCTTTGAGGAGAGGCACAACTGACACAATATCAGATCTCAAAG i micMur3.chr31 I 839 I 95 s otoGar3.GL873528 18354572 58 - 38779656 GTCCCTTAGAAATGAGCTTTGCAGAGGGGCACGATGGGCACAATAACAGATCCCAAAG i otoGar3.GL873528 C 0 I 1 s mm10.chr16 75842473 58 + 98207768 ATCCTTTTGAAACAGACTTTGAGAAGAGGCACACCTGGCAAAGTGCCCGATGCTAAAG i mm10.chr16 C 0 I 1 s canFam3.chr31 11469116 58 + 39895921 ATCCTTTAGAAATGAGCTTTGAGGAAATATACATCTGGCATGATATCAGATCCCAAAG i canFam3.chr31 C 0 I 3 s dasNov3.JH568778 672152 57 - 6883506 ATCCTTTAAAAATTAGCTTTGAGGAGAAGCATA-CTGACATGATATCCGGTTCCAAAG i dasNov3.JH568778 C 0 I 1 a score=1170095.000000 s hg38.chr21_GL383578v2_alt 57100 94 + 63917 TTAATTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACCGAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG s panTro5.chr21 894594 94 + 33445071 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACCGAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579227 94 + 46275980 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACCGAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491364 94 - 13858734 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACCAAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619687 94 + 32716333 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACTGAAATCTCTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684294 94 - 185818997 TTAAGTCTCTGTTTTGGGGACTCCTGGATTGAGCATTATAACTAAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492370 94 - 192294377 TTAAGTCTCTGTTTTGGGGACTCCTGGATTGAGCATTATAACTAAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937217 94 + 9440265 TTAAGTCTCTGTTTTGGGGACTCCTGGATTGAGCATTATAACTAAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681479 94 + 21915920 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACTAAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318175 94 - 90373283 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCACTGTAACTGAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660282 94 + 1337817 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACTAAAATCTTTCT--TTGTTTATGAATGTTTATAAACGCTAGCTTTTGGCAGTTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629528 94 - 3237654 TTAAGTCTCTGTTTTGGGGGCTCCTGGATTGATCATTATAACTGAAATCTTTCT--TTGTTTATGAATGTTTATAAATGCTAGCTTTTGGCAGTTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167168 94 + 50472720 CTAAGTCTCTGTTTTGGGTGGTCCTGGATTGATCATTATAACTGAAATCTTTCT--GTGTTTATGAATGTTTATAAATGCTAGTTTTTGGCAGTTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507113 94 + 13128814 TTAAGTCTTCGTTTTGGGTGGTCCTGGACTGATTATTGCAACTGAAATCTTTCT--GTGTTTATGAATGTTTATAAATGCTAGTTTTTGGCAGTTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044811 94 - 14377064 CTAAGTCTTCGTTTTGGGTGGTCCTGGATTGATTATTATAACTGAAATCTTTCT--GTGTTTATGAATGTTTATAAATGCTAGTTTTTGGCAGTTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092460 94 + 9889416 TTAAGTCTCCGTTGTGGGTGGTCCTGGATTGATCATTATAACTGAAATCTTTCT--GTGTTTATGAATGTTTATAAATGCTAGTTTCTGGCAGTTG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18354631 94 - 38779656 TTAG--CTCTGTTTTGGTGGCTCCATAATTGATTGTTATACCTGAAATATTTCTAAGTATTTATGAATGTTCACAAATGCTGGTTTTTCTTAGCTG i otoGar3.GL873528 I 1 C 0 s mm10.chr16 75842532 79 + 98207768 ACGAAACCATGTCTTCGGAACT----GATTGTTCAC-----------TCTTCCA--ACCTTCCCAAATGCTTATGACTTCTACCGTAGGGTGAATG i mm10.chr16 I 1 C 0 s canFam3.chr31 11469177 91 + 39895921 TCTTATCTATGTTTTGGGAGCCCCTGGATTGATTGTTCTACTTGAAATATTT----GTGTTTGTAAAAGTTTATAGCTGCTAGTTTTGGGT-GTTG i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 672210 91 - 6883506 TTAGGTTTATAAGTTGGAC-CTCCTGGATGGATGGCTACACCTGAAATATTT----GTGTTTATGAATGTTTATAACTGCTAGCTTTTGGTGGTTG i dasNov3.JH568778 I 1 C 0 e micMur3.chr31 16866126 95 + 47401472 I a score=825285.000000 s hg38.chr21_GL383578v2_alt 57194 64 + 63917 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGAAGGACAAGTTTGAAGCC-A----GATAG--GGTTCA s panTro5.chr21 894688 64 + 33445071 -AGGAGACTTTGAAGCAGCAAACCGCACAAGGAAGAAGGACAAGTTTGAAGCC-A----GATAG--GGTTCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579321 64 + 46275980 -AGGAGACTTTGAAGCAGCAAACCGCACAAGGAAGAAGGACAAGTTTGAAGCC-A----GATAG--GGTTCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491458 64 - 13858734 -AGGAGACTTTGAAGCAGCAAACCGCACAAGGAAGAAGGACAAGTTTGAAGCC-A----GATAG--GGTTCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619781 64 + 32716333 -AGGAGACTTTGAAGCAGCAAACCGCACAAGGAAGAAGGGCAAGTTTGAAGCC-A----GATAG--TGTTCA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684388 62 - 185818997 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-------AGAG--TGTTCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492464 62 - 192294377 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-------AGAG--TGTTCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937311 64 + 9440265 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-A----GAGAG--TGTTCA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681573 64 + 21915920 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-A----GAGAG--TGTTCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318269 64 - 90373283 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-A----GAGAG--TGTTCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660376 64 + 1337817 -AGGAGACTTTGAAGCAGCAAACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-A----GAGAG--CGTTCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629622 64 - 3237654 -AGGAGACTTTGAAGCAGCAGACTGCACAAGGAAGGAGGACAAGTTTGAAGTC-A----GAGAG--TGTTCA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167262 64 + 50472720 -AGGAGACTTTGAAGCAGTAAACCACACAAGGGAGAAGGACAAGTTTGAAGCC-A----GACAG--TGTTCA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507207 64 + 13128814 -AGGAGACTTTGAAGCAGTAAACCACACAAGGGAGAAGGACAAGTTTGAAGCC-A----GACAA--TGTTCA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044905 64 - 14377064 -AGGAGACTTTGAAGCAGTAAACCGCAAAAGGGAGAAGGACAAGTTTGAAACC-A----GACAG--TGTTCA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092554 64 + 9889416 -AGGAGACTTTGAAGCAGTAAACCGCACAAGGGAGAAGGGTAAGTTTGAAGCC-A----GACAG--TGTTCA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16866221 64 + 47401472 -AGGAGACTTTGAAGCAGTCAGGGGAACAAGGAAGAAGGGCAAGATTGAAGCC-A----GATAG--TGTTCA i micMur3.chr31 I 95 I 75 s otoGar3.GL873528 18354725 66 - 38779656 -AGGAGACTCTGAAGCAGGAAGCTGCACAAGGAGGAAGGGCAACCTTGGAGCG-G----GATAGAACATTCA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75842611 59 + 98207768 ---GAGAGGCCGCAAGACTAAGCTTCCAAAGCAAGAAAGGGAAAACTTAATCC-A----TAGCA--CGC--- i mm10.chr16 C 0 C 0 s canFam3.chr31 11469268 65 + 39895921 -AGGAGACTTTGAAGCAATAACCCACAT---GAAGAAAGGCAGGCTTGAAACC-AACCGAGTAG--TGTTCA i canFam3.chr31 C 0 I 3 s dasNov3.JH568778 672301 66 - 6883506 AAAGAATTTTTCAAGTAGAAAGCCACACAATGAAGCAGGACAATATTGAAACCCA----GATAA--TGTCCA i dasNov3.JH568778 C 0 C 0 a score=772408.000000 s hg38.chr21_GL383578v2_alt 57258 83 + 63917 --GTAGGGGTAAAGCAGAGAAA-AAGAGTAAATCGT-------TGGATG-CAGGATGATTAGTAAGACCAGCA-AGTGATATGAGTACCGAATTG s panTro5.chr21 894752 83 + 33445071 --GTAGGGGTAAAGCAGAGAAA-AAGAGTAAATCGT-------TGGATG-CAGGATGATTAGTAAGACCAGCA-AGTGATATGAGTACCGAATTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579385 83 + 46275980 --GTAGGGGTAAAGCAGAGAAA-AAGAGTAAATCGT-------TGGATG-CAGGATGATTAGTAAGACCAGCA-AGTGATATGAGTACCGAATTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491522 83 - 13858734 --GTAGGGGTAAAGCAGAGAAA-AAGAGTAAATCGT-------TGGATG-CAGGATGATTAGTAAGACCAGCA-AGTGATATGAGTACCGAATTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619845 83 + 32716333 --GTAGGGTTAAAACAGAGAAA-AAGAGTAAATCAT-------TGGATG-CAGGATGACTGGTAAGACCAGCA-ACTGGTATGAGTACCGAATTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684450 83 - 185818997 --GTAAGGGTAAAGCAGAGAAA-AAGAGTGAGTCAT-------TGGTTG-CAGGATGATTGGTAAGACCAGCA-AGTGTTATGAGACCTGGATTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492526 83 - 192294377 --GTAAGGGTAAAGCAGAGAAA-AAGAGTGAGTCAT-------TGGTTG-CAGGATGATTGGTAAGACCAGCA-AGTGTTATGAGACCTGGATTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937375 83 + 9440265 --GTAAGGGTAAAGCAGAGAAA-AAGAGTGAGTCAT-------TGGTTG-CAGGATGATTGGTAAGACCAGCA-AGTGTTATGAGACCTGGATTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681637 83 + 21915920 --GTAAGGGTAAAGCCGAGAAA-AAGAGTGAGTCAT-------TGGTTG-CAGGATGATTGGTAAGACCAGCA-AGTGTTATGAGACCTGAATTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318333 83 - 90373283 --GTAAGGGTAAAGCAGAGAAA-AAGAGTGAGTCAT-------TGGTTG-CAGGATGACTGGTAAGACCAGCA-AATGTTATGAGACCTGGATTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660440 83 + 1337817 --GTAAGGGTAAAGCCGAGAAA-AAGAGTGAGTCAT-------TGGTTG-CAGGATGATTGGTAAGACCAGCA-AGTGTTATGAGACCTGGATTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629686 82 - 3237654 --GTAGGGGTAAAGC-GAGAAA-AAGAGTGAGTCAT-------TGGATG-CAGGATGATTGGTAAGACCAGCA-AGTGTTATGAGACCTGGATTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167326 67 + 50472720 --GGAGGAGTAAAGCAGAG-AA-AAGTGTGAGTC-----------------------ATTGGTAAGACCAGCA-AGTGTTATAAGACCCAGATTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507271 83 + 13128814 --GGAGGAGTAAAGCAGAG-AA-AAGAGTGAGTCAT-------TGGATGACAGGAGGATTGGTAAGACCAGCA-AGTGTTAGGAGACCCAGATTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7044969 83 - 14377064 --GGAGAAGTAAAGCAGAG-AA-AAGAGTGAGTCAT-------TGGATGACAGGAGGATTGGTAAGACCAGCA-AGTGTTATGAGACCCAAATTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092618 83 + 9889416 --GGAGGAGTAAAGCAGAG-AA-AAGAGTGAGTCAT-------TGGATGACAGAAGGATTGGTAAGACCAGCA-AGTGTTATGAGACCCAGATTA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18354791 82 - 38779656 -----------GAGGAGAAGGA-AAGAGAGAATCATGAGCAAGTGACTG-TAGGGAGACTGGTGAAGTCAGCAGAACATCACGAGGCTAGGATTA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75842670 76 + 98207768 --GCACGGGAGATGTAACGAAG-CAGGATCAA--GT-------AGGGTA-CAGGTGGATTGCAAAA-----CA-GAATTTGAGGAAACCAGACCG i mm10.chr16 C 0 C 0 s canFam3.chr31 11469336 85 + 39895921 --AAAGAAGTAAAGAGGTGAAGCAAGAATGAGTTAA-------TGGATA-TAGAAGGATTGGTGAGACCCATGGAGCATGATGAGACCAGGATTA i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 672367 86 - 6883506 GGGGAGAGGTAAAGAGATAAGC-AAGAGGAAGTCAT-------CAGATG-CCTGAGAAATTGTGAGACCAACAGAGCATAATGAGACCAGGATTA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866285 75 + 47401472 I a score=3700142.000000 s hg38.chr21_GL383578v2_alt 57341 279 + 63917 GATAA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCCGGTAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAAC-AAACC-AAA-AGGATTTGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAATGATTTCAGC-TTGTTTTGTTGAAGTCACCGATGCATTGTGGTAGAATTTTATC-T--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCGTTT----CAG--GGC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA s panTro5.chr21 894835 279 + 33445071 GATAA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCTGGTAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAAC-AAACC-AAA-AGGATATGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAATGATTTCAGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAGAATTTTATC-C--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCGTTT----CAG--GGC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579468 279 + 46275980 GATAA-GGGACTCAGAGACGCAGGAAAAGGGAGAACTGGAGGCCTGGTAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAAC-AAACC-AAA-AGGATATGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAATGATTTCAGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAGAATTTTATC-C--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCGTTT----CAG--GGC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491605 279 - 13858734 GATAA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCCGGTAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAAC-AAACC-AAA-AGGATTTGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAATGATTTCAGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAGAATTTTATC-T--------------------GAGTAGA--TAGTATGTAA----TTTAACC-----TCCCATTT----CCG--GGC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1619928 280 + 32716333 GATAA-GGGACTCAGAGACTCAGGAAAAGTGAGAACTGGTGACCCGGTAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAACAAAACC-AAA-AGGATTTGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAATGATTTCAGC-TCGTTTTGTTGAATTCCCGGATGCATTGTGGTAGAATTTTATT-T--------------------GAGTAGG--TAGTATGTAC----TTTAACC-----TTCCATTT----CAG--GGC---AAT---TAAAGACGTGCTCGTTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684533 282 - 185818997 GATGA-GGGACTCAGAGACTCAGGAAAAGAGAGAACTGGAGGCCCGGCAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAACAAAACCAAAA-AGGATTTGCCTTCTCAGAGACTG-ATTTATTTTTTCCCACCAGTGATTTCGGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAAAATTTTATT-T--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492609 280 - 192294377 GATGA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCCGGCAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAACAAAACC-AAA-AGGATTTGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAGTGATTTCGGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAAAATTTTATT-T--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937458 280 + 9440265 GATGA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCCGGCAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAACAAAACC-AAA-AGGATTTGCCTTCTCAGAGACTG-ATTTG-TTTTTCCCACCAGTGATTTTGGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAAAATTTTATT-T--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGACGTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5681720 280 + 21915920 GATGA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCCGGCAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAACAAAACC-AAA-AGGATTTGCCTTCTCGGAGACTG-ATTTA-TTTTTCCTACCAGTGATTTCGGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAGAATTTTGTT-T--------------------GAGTAGG--TAGCATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGACGTGCTCGTTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318416 280 - 90373283 GATGA-GGGACTCAGAGACTCAGGAAAAGTGAGAACTGGAGGCCTGGCAAGGCTGAGG-TGG-------------GCCAGAACAGGAAGAACAAAACC-AAA-AGGATTTGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACTAGTGATTTTGGC-TTGTTTTGTTGAATTCACCGATGCATTGTGGTAGAATTTTGTT-T--------------------GAGTAGC--TGGTATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGACGTGCTCGTTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660523 280 + 1337817 GATGA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCCGGCAAGGCTGAGA-TGG-------------GCCAGAACAGGAAGAACAAAACC-AAA-AGGATTTGCCTTCTCGGAGACTA-ATTTA-TTTTTCCCACCAGTGATTTCGGC-TTGTTTTGTTGAATTCACGGATGCATTGTGGTAGAATTTTGTT-T--------------------GAGTAGG--TAGCATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGACGTGCTCGTTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 629768 280 - 3237654 GACGA-GGGACTCAGAGACTCAGGAAAAGGGAGAACTGGAGGCCTGGCAAGGCTGAGA-TGG-------------GCCAGAATAGGAAGAACAAAACC-AAA-AAGATTTGCCTTCTCAGAGACTG-ATTTA-TTTTTCCCACCAGTGATTTTGGC-TTGTTTTGTTGAATTCACTGATGCATTGTGATAGAATTTTATT-T--------------------GAGTAGG--TAGTATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AAT---TAAAGATGTGCTCGTTTTCTTTTAGCAGCTTAGTGCTTTAAAGGTTAAGGAAAATTAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167393 280 + 50472720 GATAAGGGGACTCAGAATCTCAGGACAAGGGAGAACTGGAGGCCCAGTAAGGGTAAGA-TGG-------------GCCAGAACAGGAAGAACAAAACA-AAAGAGGATTTGCCTTCTCAGAGACTG-CGTTC-TTTTTTCTACTAATGATATCAGT-TTGTTTTGTTGAATTTACTGATGCATTGTGGTA-----TTATT-T--------------------GAGTAGG--TTGTATGTAA----TTTAACC-----TCCCATTT----CAG--GAC---AATAATTAATGATTTGCTCATTTTATTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507354 284 + 13128814 GATAA-GGGACCCAGAATCTCAGGACAAGGGAGAACTGGAGGCCCAGTAAGGTTAAGA-TGG-------------TCCAGAACAGGAGGAACAAAACA-AAA-AGGATTTGCCTTCTCAGAGACTGATTTTC-TTTTTCCTGCTAATGATATGAGT-TTGTTTTGTTGAATTTACTGATGCATTGTGGTAGAATTTTATT-T--------------------GAGTAGG--TCGTATATAA----TTTAACC-----TCCCATTT----CAG--GAC---AATAATTAAAGATTTGTTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7045052 283 - 14377064 GATAA-GGGACTCAGAATCTCAGGACAAGGGAGAATTGGAGGCCCAATGAGGTTAAGA-TGG-------------GCCAGAACAGGAAGAACAAAACA-AAA-AGGATTTGCCTTCTCAGAGACTG-ACTTC-TTTTTCCTACTAATGATACCAGT-TTGTTTTGTTGAATTTACTGACGCATTGTGGTAGAATTTTATT-T--------------------GAGTAGG--TCATATATAA----TTTAACC-----TCCCATTT----CAG--GAC---AATAATTAAAGATTTGCTCATTTTCTTTTAGCAGATTAGTGCTTTAAAGGTTAAGGAAAATTAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092701 279 + 9889416 GATAA-GTGACTCAGAATCTCAGGACAAGGGAGAACTGGAGGCCCAGTAAGGTTAAGA-TGG-------------GCCAGAACAGGAAGAGCAAAACA-AAA-AGGATTTGCCTTCTCAGAGA-TG-ATTTC-TTTTTCCTAC---TGATATCAGT-TTGTTTTGTTGAATTCACCAATGCATTGTGGTAGAATTTTATT-T--------------------GAGTAGG--TCATATATAA----TTTAACC-----TCCCATTT----CAG--GAC---AATAAGTAAAGATTTGCACATTTTCTTTTAGCAGATTAGTGCTTGAAAGGTTAAGGAAAATTAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16866360 276 + 47401472 GATAA-GGGACTCAGAGACACAGGAAAGGGTGGAACTAGAGGCCAATTAAGGCTGGGATTGG-------------GCTGGAATAGGAAAAACA------AAA-AGGATTTGC-CTTTCAGAGACTG-ATTTC-TTTATCCCACCTCTGCTATCAAC-TTGTTTTGTTGAATTCAGTGATATATTTTGGTAGAATTTTATT-T--------------------GTATAGA--TAACATGTAA----TTTATCC-----TCCCATTT----TAG--GAACAGAAT---T--AGACTTGCTCATTTTCTATTAGCAGATCAGTGCTTTAAAGGGTAAGGAAAACTAA i micMur3.chr31 I 75 C 0 s otoGar3.GL873528 18354873 253 - 38779656 GATAA-GGGACTCGGAGACACAGGAAAAGGTGGAACTGGAGGCTGATGAAGGCTGAGA-TAG-------------GCTGGGATATGAAGAACA------CAA-AGGATTTGCATTTTCAGAGACTG-ATTTC-TTTACCCCACTTATGCTATCAGC-TTGTTTTGTTGAATTCACTGATGTCTTTTGGTAGAATTTTATG-T------------------------------------TAA--------------------ATTT----CAG--GAAAAGAAT---TAAAGACTTGTTCATTGTTTATTAGCAGATTAGTGCGTTCGAGGTTAAGGAAAATTAA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75842746 309 + 98207768 GATGC-TCAGCTCCAGGAGTCAGGGAAGTGGAT-----GAGGCAC----AGGCAGAGA-CAGCCATTGTGAGCTAGCCCAAACAGGAAGAACAGGACC-CGG-AGGATCGGCCTCCCCAGAGGTAA-AGTTC-TTTTGCCCAC-AAGGATAACAGAGTCCTTTTGGTGG-----CTGATGTTTTGTTTTAGTGTTTCACA-TTCTTTAATAATGTTTGGGTAGAGTAGA--CAGTGTGTGAT---TTTAACCCCTTACCCCATTTCATACAG--GAA---TTA---CAAACACTGGCTCAGTTTCTACTCCCGGGCTAATACTTTACATGTTCAGGGAAAATAA i mm10.chr16 C 0 I 301 s canFam3.chr31 11469421 283 + 39895921 GAGAA-GGGACTCAGAGACACAGAAAAAGGAGGAACTGGAGGCCAATTGATGCTGAAC-TGG-------------GCTAGAACAGGAAGAACAAAACA-AAA-ATGATTTGCCTCCTAAGAGACTG-ATTTC-TTTTTCCGACCAGTGCTTTCAGC-TTGTTTTGTTGAGTTCATTGATGTACTTTGGTAGAATTTTATT-T--------------------GGGTAGACCTAGTGTGAAG----GATAATC-----TATCATTT----CAGTCAAG---AGT---TGAAGATTTGTTCATTTTCTATTAGCAGATTAGTGCTTTAAAGATTAAGAAAATATG- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672453 279 - 6883506 GATGG-GGGACTCAGAGACATGAGAAAAAGTGGGACTGGGAGTC-AGTTAGGCTGTGC-TGG-------------GCTAAAAC---AAGAACAAAA---GAA-ATGACTTGCCTTTTCAGAGACTG-ATTTC-TTTTTCTGAGCAATGCTATCAAC------TTGCTGGATTCACTGGTGTGTGTTGGTAAAATTTTTTTGT--------------------GAATAGACATAGTCTGTAAGAAATTTAATT-----TCCCATTA----AAG--AAGAAGAAT---TGAAGACTTGCTTATTTTCTACTAGCAGATTAGTGCTTTAAAGGTTCAGGAAAATGAG i dasNov3.JH568778 C 0 C 0 a score=118777.000000 s hg38.chr21_GL383578v2_alt 57620 12 + 63917 C--------TTAGAGATTTA s panTro5.chr21 895114 12 + 33445071 C--------TTAGAGATTTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579747 12 + 46275980 C--------TTAGAGATTTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491884 12 - 13858734 C--------TTAGAGATTTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620208 12 + 32716333 C--------TTAGAGATTTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684815 12 - 185818997 C--------TTAGAGATTTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492889 12 - 192294377 C--------TTAGAGATTTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937738 12 + 9440265 C--------TTAGAGATTTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682000 12 + 21915920 C--------TTAGAGATTTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318696 12 - 90373283 C--------TTAGAGATTTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660803 12 + 1337817 C--------TTAGAGATTTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630048 12 - 3237654 C--------TTTGAGATTTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167673 20 + 50472720 CTCAGAGATTCAGAGATTTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507638 20 + 13128814 CTCAGAGATTCAGAGATTTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7045335 20 - 14377064 CTCAGAGATTCAGAGATTTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6092980 20 + 9889416 CTCAGAGATTCAGAGATTTA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16866636 12 + 47401472 C--------TCTGTGATTTA i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18355126 12 - 38779656 C--------TTTGTAATTTA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11469704 12 + 39895921 C--------TTTGTGATTTC i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672732 12 - 6883506 C--------TGTATGACATA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75843055 301 + 98207768 I a score=986181.000000 s hg38.chr21_GL383578v2_alt 57632 72 + 63917 AAAGGAGATAAAATAATTAGGAAATAAAAACATTGAAAAACAATACTACATTCACTGTGATTTTATTAAAAA s panTro5.chr21 895126 71 + 33445071 AAAGGAGATAAAATAATTAGGAAATAAAA-CATTGAAAAACAATACTACATTCACTGTGATTTTATTAAAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579759 71 + 46275980 AAAGGAGATAAAATAATTAGGAAATAAAA-CATTGAAAAACAATACTACATTCACTGTGATTTTATTAAAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491896 72 - 13858734 AAAGGAGATGAAATAATTAGGAAATAAAAACATTGAAAAACAATACCACATTCACTGTGATTTTATTAAAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620220 72 + 32716333 AAAGGAGATGAAATGATTAGGAAATAAAAACATTGAAAAACAATACCACATTCATTGTGATTTTATTAAAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684827 72 - 185818997 AAAGGAGATGAAGTAATTAGGAAATAAAAACATTGAAAAACAATACCACATGCATTGTGATTTTATTAAGAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492901 72 - 192294377 AAAGGAGATGAAATAATTAGGAAATAAAAACATTGAAAAACAATACCACATGCATTGTGATTTTATTAAGAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937750 72 + 9440265 AAAGGAGATGAAATAATTAGGAAATAAAAACATTGAAAAACAATACCACATGCATTGTGATTTTATTAAGAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682012 72 + 21915920 AAAGGAGATAAAATAATTAGGAAATAAAAACATTGAAAAACAATACCACATGCATTGTGATTTTATTAAGAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318708 72 - 90373283 AAAGGAGATGAAATAATTAGGAAATAAAAACATTGAAAAACAATACCACATGCATTGTGATTTTATTAAGAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660815 72 + 1337817 AAAGGAGATGAAATAATTAGGAAATAAAAACATTGAAAAACAATACCACATGCATTGTGATTTTATTAAGAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630060 69 - 3237654 AAAGGAGATGAAATAATTAGGAAATAAAAACATTGAAAAACAATATCACATGCATTGTGATT---TTAAGAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167693 72 + 50472720 AAAGGAGATGAAATAATTAGGAAATAAAAACACTGAAAAGCAACACTGGATTCATTGTGATTTTATTAAAAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2507658 71 + 13128814 AAAGGAGATGAAATAATTAGGAAATAAAAACACTGAAAAGCAATACTGAATTCATTGTGattttattaaaa- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7045355 72 - 14377064 AAAGGAGATGAAATAATTAGGAAATAAAAACACGGAAAAGCAACACTGAATTCATTGTGATTTTATTAAAAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6093000 72 + 9889416 AAAGGAGATGAAATAATTAGGAAATAAAAACACTGAAAAGCAACACTGAATTCATTGTGATTTTATTAGAAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16866648 72 + 47401472 AAAGGAGATGAAATGACTAGGAAATAAAAACACTGAAAAACAATATTATAATCATTTTGACTTTATTAAAAA i micMur3.chr31 C 0 I 453 s otoGar3.GL873528 18355138 67 - 38779656 AAAGGAAGTAAAATGACTAGGAAATAAAAACATTAAAAAA----ATCATATTCA-TTTGATTTTATTAAAAA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843356 69 + 98207768 AGATGAAATGAAATGACAAGGACGTAA---CACTGAGAAACAACATCTCATTCCGTGAACTTCTACTAAGGT i mm10.chr16 I 301 C 0 s canFam3.chr31 11469716 66 + 39895921 ---AAAGGTGAAATGACTATGAAATAA---TATTGAAAAACAGCACCAAATTTATTATGATCTTATTAAAAA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672744 69 - 6883506 AAAGAAGAC---ATGTTTAGGAAATAAGAACACTGAAAAATGATAGCATCTTCATTGTGACTTTATTATGAA i dasNov3.JH568778 C 0 C 0 a score=7663.000000 s hg38.chr21_GL383578v2_alt 57704 2 + 63917 TC- s panTro5.chr21 895197 2 + 33445071 TC- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579830 2 + 46275980 TC- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491968 2 - 13858734 TC- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620292 2 + 32716333 CC- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684899 2 - 185818997 CC- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492973 2 - 192294377 CC- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937822 2 + 9440265 CC- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682084 2 + 21915920 CC- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318780 2 - 90373283 CC- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660887 2 + 1337817 CC- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630129 2 - 3237654 CC- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167765 2 + 50472720 AC- i calJac3.chr21 C 0 C 0 s aotNan1.NW_018487195v1 6093072 2 + 9889416 AC- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18355205 2 - 38779656 CC- i otoGar3.GL873528 C 0 I 881 s mm10.chr16 75843425 1 + 98207768 -C- i mm10.chr16 C 0 I 1 s canFam3.chr31 11469782 2 + 39895921 CC- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672813 2 - 6883506 -CA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866720 453 + 47401472 I e cebCap1.NW_016107322v1 7045427 0 - 14377064 C e saiBol1.JH378168 2507729 0 + 13128814 C a score=44157.000000 s hg38.chr21_GL383578v2_alt 57706 4 + 63917 AGTT-- s panTro5.chr21 895199 4 + 33445071 AGTT-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579832 4 + 46275980 AGTT-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491970 4 - 13858734 AGTT-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620294 4 + 32716333 AGTT-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684901 4 - 185818997 AGTT-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492975 4 - 192294377 AGTT-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937824 4 + 9440265 AGTT-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682086 4 + 21915920 AGTT-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318782 4 - 90373283 AGTT-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660889 4 + 1337817 AGTT-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630131 4 - 3237654 AGTT-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19167767 4 + 50472720 AGTT-- i calJac3.chr21 C 0 I 787 s saiBol1.JH378168 2507729 4 + 13128814 agtt-- i saiBol1.JH378168 C 0 I 789 s cebCap1.NW_016107322v1 7045427 4 - 14377064 AGTT-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6093074 4 + 9889416 AGTT-- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18356088 4 - 38779656 ATTT-- i otoGar3.GL873528 I 881 C 0 s mm10.chr16 75843427 4 + 98207768 ACCT-- i mm10.chr16 I 1 C 0 s canFam3.chr31 11469784 4 + 39895921 ACTT-- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672815 4 - 6883506 --TTTT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866720 453 + 47401472 I a score=60481.000000 s hg38.chr21_GL383578v2_alt 57710 5 + 63917 TTTAC s panTro5.chr21 895203 5 + 33445071 TTTAC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579836 5 + 46275980 TTTAC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491974 5 - 13858734 TTTAC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620298 5 + 32716333 TTTAC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684905 5 - 185818997 TTTAC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492979 5 - 192294377 TTTAC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937828 5 + 9440265 TTTAC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682090 5 + 21915920 TTTAC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318786 5 - 90373283 TTTAC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660893 5 + 1337817 TTTAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630135 5 - 3237654 TTTAC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19168558 5 + 50472720 TTTAC i calJac3.chr21 I 787 C 0 s saiBol1.JH378168 2508522 5 + 13128814 TTTAC i saiBol1.JH378168 I 789 C 0 s cebCap1.NW_016107322v1 7045431 5 - 14377064 TTTAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6093078 5 + 9889416 TCTAC i aotNan1.NW_018487195v1 C 0 I 786 s otoGar3.GL873528 18356092 5 - 38779656 TCCAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843431 5 + 98207768 CCCAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11469788 5 + 39895921 TCCAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672819 5 - 6883506 TCCAC i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866720 453 + 47401472 I a score=101941.000000 s hg38.chr21_GL383578v2_alt 57715 9 + 63917 AC--AACTTTT s panTro5.chr21 895208 9 + 33445071 AC--AACTTTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579841 9 + 46275980 AC--AACTTTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491979 9 - 13858734 AC--AACTTTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620303 9 + 32716333 GC--AACTTTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684910 9 - 185818997 AC--AACTTTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159492984 9 - 192294377 AC--AACTTTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937833 9 + 9440265 AC--AACTTTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682095 9 + 21915920 AC--GACTTTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318791 10 - 90373283 ACA-AACTTTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660898 9 + 1337817 AC--GACTTTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630140 9 - 3237654 AC--AACTTTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19168563 9 + 50472720 AC--AACTTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2508527 9 + 13128814 AC--AACTTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7045436 9 - 14377064 AC--AACTTTT i cebCap1.NW_016107322v1 C 0 I 800 s aotNan1.NW_018487195v1 6093869 9 + 9889416 AC--AACTTTT i aotNan1.NW_018487195v1 I 786 C 0 s otoGar3.GL873528 18356097 9 - 38779656 AG--AACTTTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843436 9 + 98207768 GC--AACCTTT i mm10.chr16 C 0 C 0 s canFam3.chr31 11469793 5 + 39895921 --GAAAC---- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 672824 9 - 6883506 AC--AAGTTTT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866720 453 + 47401472 I a score=160224.000000 s hg38.chr21_GL383578v2_alt 57724 18 + 63917 AACACATGGTATCCTATC------ s panTro5.chr21 895217 18 + 33445071 AACACATGGTATCCTATC------ i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579850 18 + 46275980 AACACATGGTATCCTATC------ i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 491988 18 - 13858734 AACACATGGTGTCCTATC------ i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620312 17 + 32716333 -ACACATGGCGTCCTAAC------ i nomLeu3.chr25 C 0 I 4 s rheMac8.chr3 152684919 18 - 185818997 AACACATGGTGTCCCAAC------ i rheMac8.chr3 C 0 I 4 s macFas5.chr3 159492993 18 - 192294377 AACACATGGTGTCCCAAC------ i macFas5.chr3 C 0 I 4 s macNem1.NW_012019910v1 5937842 18 + 9440265 AACACATGGTGTCCCAAC------ i macNem1.NW_012019910v1 C 0 I 4 s cerAty1.NW_012002954v1 5682104 18 + 21915920 AACACGTGGTGTCCCAAC------ i cerAty1.NW_012002954v1 C 0 I 4 s chlSab2.chr2 12318801 18 - 90373283 AACACATGGTGTCCCAAC------ i chlSab2.chr2 C 0 I 4 s manLeu1.NW_012107264v1 660907 18 + 1337817 AACACATGGTGTCCCAAC------ i manLeu1.NW_012107264v1 C 0 I 4 s colAng1.NW_012116933v1 630149 18 - 3237654 AACACATGGTATCCCAAC------ i colAng1.NW_012116933v1 C 0 I 4 s calJac3.chr21 19168572 18 + 50472720 AACACATGGTGTCCCAAC------ i calJac3.chr21 C 0 I 4 s saiBol1.JH378168 2508536 18 + 13128814 AACACACGATGTCCCGAC------ i saiBol1.JH378168 C 0 I 4 s aotNan1.NW_018487195v1 6093878 18 + 9889416 AACACATGGTGTCCCAAT------ i aotNan1.NW_018487195v1 C 0 I 4 s otoGar3.GL873528 18356106 6 - 38779656 -----ACTGTG------------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843445 16 + 98207768 --CCCACAGTGTTCCATG------ i mm10.chr16 C 0 I 3 s canFam3.chr31 11469798 18 + 39895921 AATACACAGTGCCTCAAC------ i canFam3.chr31 C 0 I 4 s dasNov3.JH568778 672833 24 - 6883506 AGCAAGTGGTGTCTCAACTGTGTC i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866720 453 + 47401472 I e cebCap1.NW_016107322v1 7045445 800 - 14377064 I a score=437535.000000 s hg38.chr21_GL383578v2_alt 57742 39 + 63917 GTTTCTGTCTAAATTGTAAAACTATGTCTGCTTTGAC--AT s panTro5.chr21 895235 39 + 33445071 GTTTCTGTCTAAATTGTAAAACTATGTCTGCTTTGAC--AT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579868 39 + 46275980 GTTTCTGTCTAAATTGTAAAACTATGTCTGCTTTGAC--AT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 492006 39 - 13858734 GTTTCTGTCTAAATTGTAAAACTATGTCTGCTTTGAC--AT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620333 39 + 32716333 GTTTCTGTCTAAATTGTAAAACTATGTCTGCTTTGAC--AT i nomLeu3.chr25 I 4 C 0 s rheMac8.chr3 152684941 39 - 185818997 ATTTCTGCCTAAATTGTAAAACTATGTCTGCTTTGAA--AT i rheMac8.chr3 I 4 C 0 s macFas5.chr3 159493015 39 - 192294377 ATTTCTGCCTAAATTGTAAAACTATGTCTGCTTTGAA--AT i macFas5.chr3 I 4 C 0 s macNem1.NW_012019910v1 5937864 39 + 9440265 ATTTCTGCCTAAATTGTAAAACTATGTCTGCTTTGAA--AT i macNem1.NW_012019910v1 I 4 C 0 s cerAty1.NW_012002954v1 5682126 39 + 21915920 GTTTCTGCCTAAATTGTAAAACTATGTCTGCTTTGAA--AT i cerAty1.NW_012002954v1 I 4 C 0 s chlSab2.chr2 12318823 39 - 90373283 GTTTCTGCCTAAATTGTAAAACTATGTCTGCTTTGAA--AT i chlSab2.chr2 I 4 C 0 s manLeu1.NW_012107264v1 660929 39 + 1337817 GTTTCTGCCTAAATTGTAAAACTATGTCTGCTTTGAA--AT i manLeu1.NW_012107264v1 I 4 C 0 s colAng1.NW_012116933v1 630171 39 - 3237654 GTTCCTGCCTAAATTGTAAAACTATGTCTGCTTTGAC--AT i colAng1.NW_012116933v1 I 4 C 0 s calJac3.chr21 19168594 39 + 50472720 GTTTCTGGCTCAATCGTAAAGCTATGTCTACTTTGAC--CT i calJac3.chr21 I 4 C 0 s saiBol1.JH378168 2508558 41 + 13128814 GTTTCTGGCTCAATTGTAAAGCTATGTCTACTTTGACTTTT i saiBol1.JH378168 I 4 C 0 s cebCap1.NW_016107322v1 7046245 39 - 14377064 GTTTCTGGCTCAATTGTAAAGCTATGTCTACTTTGAC--TT i cebCap1.NW_016107322v1 I 800 C 0 s aotNan1.NW_018487195v1 6093900 39 + 9889416 GTTTCTGGCTCAATTGTAAAGCTATGTCTACTTTGAC--TT i aotNan1.NW_018487195v1 I 4 C 0 s otoGar3.GL873528 18356112 39 - 38779656 GTATTTGCCTGCATTGTAAAAGAATTTCTACTTTGAT--AC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843464 39 + 98207768 TTCCCCATTGTGATTGCAAAAGTACACCTAGTAAGAT--TC i mm10.chr16 I 3 C 0 s canFam3.chr31 11469820 39 + 39895921 GTTTCTTTCTGAATTGTGAGAGAATTTGTACTTTGAT--TC i canFam3.chr31 I 4 C 0 s dasNov3.JH568778 672857 38 - 6883506 CTTTCTGCTTAAGTTGTGGAAGAATTTCTACTTTGGT--T- i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16866720 453 + 47401472 I a score=2521039.000000 s hg38.chr21_GL383578v2_alt 57781 184 + 63917 TTT-TTTCTCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACATACATTTATGTTTAAAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAATTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATATCCCATCTACGTTGTCTGCCTTACTGGAGGCTTCGCA s panTro5.chr21 895274 184 + 33445071 TTT-TTTATCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACATACATTTATGTTTAAAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAATTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTACGTTGTCTGCCTTACTGGAGGCTTCGCA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14579907 184 + 46275980 TTT-TTTATCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACATACATTTATGTTTAAAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAATTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTACGTTGTCTGCCTTACTGGAGGCTTCGCA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 492045 182 - 13858734 TTT-TTTCTCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACATACATTTATGTTTAAAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAATTCCACACCACTTCTC-AAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTA-GTTATCTGCCTTACTGGAGGCTTCGCA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620372 184 + 32716333 GTT-TTTCTCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACATACATTTATGTTTAAAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAATTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTACGCTGTCTGCCTTACGGGGGGCTTCACA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152684980 184 - 185818997 TTTTTTTCTCCCCTTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTTATGTTT-AAATTAAAGA----TGGCCA----ATTTCCCTTTAAGGTTGTTCCAGTTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGCATGGGCTGGGAATACCCTGTCTACATTGTCTGCCTTACTGGAGGCTTCGCA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159493054 184 - 192294377 TTTTTTTCTCCCCTTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTTATGTTT-AAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGTTGTTCCAGTTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGCATGGGCTGGGAATACCCTGTCTACATTGTCTGCCTTACTGGAGGCTTCGCA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5937903 184 + 9440265 TTTTTTTCTCCCCTTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTTATGTTT-AAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGTTGTTCCAGTTCCATACCACTTCTCGAAATAACTGGAGCTGTCCAGCATAGGCTGGGAATACCCTGTCTACATTGTCTGCCTTACTGGAGGCTTCACA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682165 184 + 21915920 TTTTTTTCTCCCCTTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTTATGTTT-AAATTAAAGA----TGGCAA----ATTTTCCTTTAAGGTTGTTCCAGTTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGCATGGGCTGGGAATACCCTATCTACATTGTCTGCCTTACTGGAGGCTTCGCA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12318862 184 - 90373283 TTTTTTTCTCCCCCTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTCATGTTT-AAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAGTTCCACACCACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTACATTGTCTGCCTTACTGGAGGCTTCGCA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 660968 184 + 1337817 TTTTTTTCTCCCCTTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTTATGTTT-AAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAGTTCCACACCACTTCTAGAAATAACTGGAGCTGTCCAGCATGGGCTGGGAATACCCTATCTACATTGTCTGCCTTACTGGAGGCTTCGCA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630210 184 - 3237654 TTTGTTTCTCCCCTTGCTTATTTCCTTCAGGTGGTCTGTCACATACATTTATGTAT-AAATTAAAGA----TGGCCA----ATTTTCCTTTAAGGCTGTTCCAGTTCCACACCACTTCTCGAAATAACTGGAACTGTCCAGGATGGGCTGGGAATACCCCATCTACATTGTCTGCCTTACTGGAGGCTTCACA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19168633 184 + 50472720 TTT-TTTCTTCCCCTGCTTATTTCCTTCAAGTGGCCTGTCACATAAATTTATGTTTAAAATTAAAGA----TGGCTA----ATTTTCCTTTAAGACTGCTCCAGTTCCACACTACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTACATGGTATGCATTACTGGAGGCTTCACA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2508599 184 + 13128814 TTT-TTTCTCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACACAAATTTATGTTTAAAATTAAAGA----TGGCCA----ATTTTCCTTTAAGACTGCTCCAGTTCCACACTACTACTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGAAATACCCCATCTACATGGTCTGCCTTACTGGAGGCTTCACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7046284 184 - 14377064 GTT-TTTTTCCCCCTGCTTATTTCGTTCAGGTGGCCTGTCACACAAATTTAAGTTTAAAATTAAAGA----TGGCCA----ATTGTCCTTTAAGACTGCTCCAGTTCCACACTACTTCTCGAAATAACTGGAGCTGTTCGGGATGGGCTGGGAATACCCTGTCTACATGGTCTGCCTTACTGGGTGCTTCGCA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6093939 184 + 9889416 TTT-TTTCTCCCCCTGCTTATTTCCTTCAGGTGGCCTGTCACACAAATTTATGTTTAACATTAAAGA----TGGCCA----ATTTTCCTTTAAGACTGCTCCAGTTCCACACTACTTCTCGAAATAACTGGAGCTGTCCAGGATGGGCTGGGAATACCCCATCTACATGATCTGTATTACTGGAGGCTTCGCA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16867173 188 + 47401472 TTT-TTTCTCCTCCTGCTCATTCCCCCCAGGTGGCCTATAACATAAATTTATTTTTAAAATTAAAGATGGCTGGCCA----ATTCTCCTTTGAGTCTGTTCCAATTCCATACTACTTCTTGAAATAACTGGAACTGTCCAGGGTGGGCTGGGAATCCCCTGTCTGTGTTGCCTGCTTTACCGGAGGCTTCACA i micMur3.chr31 I 453 C 0 s otoGar3.GL873528 18356151 165 - 38779656 TTC-TTTCTCCTCCTG----------------------TACCataaatttatttttaaaattaaaGAAGCTTGGCCA----ATTTTCCTTTGAGGCTATTCCAGTTCTACACTATTTCTTGAAATAACTGGAGCTGTCCAGGGTGGGCCGGGAATCCCCC-TCTACACTGTCTGCTTTACTGGATGCTTCCCA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843503 182 + 98207768 TCT-TTCCTTTTCTTGTCTGTTCCTGTCACATGGCCCATAACATGGGTTTATTTTTTACATTAGAGA----TGGTCAGACTGTTTTCTTTGGCGGCTGTTCTTATTCTACTCTGCTTTCT----TGCGTGGAG-TGTTCAAGGCATGCTTG-AATCCCCTATCTACACTGGCAGCTATATGGAAGGCATTCCA i mm10.chr16 C 0 C 0 s canFam3.chr31 11469859 187 + 39895921 TTT-TTTCTCCCTCTGTTTATTCTTCCCAACTGACTT-TGACataattttatttttaaaattaGAGATTTCTGGCAA----ATTTTCCTTTGAGAGTCTCCCAATTTCACACTACTTCTTCAGATAACTAGAATTTTCAAAGGTGGCCTAGGAATCCCCGATCTATATTGTTTACTTTATAGGAGGTTTCATA i canFam3.chr31 C 0 I 132 s dasNov3.JH568778 672895 175 - 6883506 CTT-TTTCTCCCCATGTTAATTTCCCCCTGGTAATCTCtaatataactttattttt-----taaaaattt-tGGTTA----ATTGTCCTTTGGGGATGTCTCCATTTCATACTATTTCTTGAGATAACTGGGACTTC------TTGGCTTACAATCCCCTATCCACATTGTCTGCTTTAC-AGAGGCTTTACA i dasNov3.JH568778 C 0 C 0 a score=12738365.000000 s hg38.chr21_GL383578v2_alt 57965 863 + 63917 TTCTCTC---------------------------------------------------------------------------------AGAGACACTttgctcatgtacaccatttggcaagaaagagtcattggcatgtccttggatga-ccccttgtctaagtg--gact----ttttggatggtactGTTGATCAATGGGGGCTTTGTAAGCGGGCAGGCCCCACTGCTGCCCTGAAGA-TCTCTTCT-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGATATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAACTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCACGTTTGATTTAAATCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTCGAGGATCCAGAAGCCTAATCGAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAATTGTAGCAAAACCCTGTGCCAAT-Attgtgattctttttcactttg--ctaatcaaa----------------------------------------atgttgtttcgcaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGGTTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT-GAAGTCATGAGAACGATTTGTAAAGATTCCTTTGACTG------GTAAATTCGCTTATTCTGGGATAG--TGCTCTCACA----------ATGATTCTATGAGGCAAATATTATATTGGTGA--TTTTTTTT-----GTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT s panTro5.chr21 895458 864 + 33445071 TTCTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCATGTACACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAAGTG--GACT----TTGTGGATGGTACTGTTGATCAATGGGGGCTTTGTAAGCGGGCAGGCCCCACTGCTGCCCTGAAGA-TCTCTTCT-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAACTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTCGAGGATCCAGAAGCCTAATCGAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAATTGTAGCAAAACCCTGTGCCAAT-Attgtgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcgcaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGGTTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT-GAAGTCATGAGAATGATTTGTAAAGATTCCTTTGACTG------GTAAATTCGCTTATTCTGGGATAG--TGCTCTCACA----------ATGATTCTATGAGGCAAATATTATATTGGTGA--TTTTTTTTT----ATTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14580091 863 + 46275980 TTCTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCATGTACACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAAGTG--GACT----TTGTGGATGGTACTGTTGATCAATGGGGGCTTTGTAAGCGGGCAGGCCCCACTGCTGCCCTGAAGA-TCTCTTCT-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTTGAAAGGAAAGCACATC---CTTCCCTGCCAACTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTCGAGGATCCAGAAGCCTAATCGAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAATTGTAGCAAAACCCTGTGCCAAT-Attgtgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcgcaaggctctgat----ggtgttcaagacaccttAAAGGAGGTATGGTTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT-GAAGTCATGAGAATGATTTGTAAAGATTCCTTTGACTG------GTAAATTCGCTTATTCTGGGATAG--TGCTCTCACA----------ATGATTCTATGAGGCAAATATTATATTGGTGA--TTTTTTTT-----ATTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 492227 863 - 13858734 TTCTCTC---------------------------------------------------------------------------------AGAGACATTTTGCTCATGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAAGTG--GACT----TTTTGGACGGTACTGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCCCCACTGCTGCCCTGAAGA-TCTCTTCT-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAACTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTCGAGGATCCAGAAGCCTAATCGAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAATTGTAGCAAAACCCTGTGCCAAT-Attgtgattcattttcactttg--ccaatcaaa----------------------------------------atgttgttttgcaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAATTGGCTGGCATAGATCCTTTATTTCACAT-GAAGTCATGAGAACGATTTGTAAAGATTCCTTTGATTG------GTAAATTCGCTTATTCTGGGATAG--TGCTCTCACA----------ATGATTCTATGAGGCAAATATTATATTGGTGA--TTTTTTTT-----ATTTGCTGTTCCTTAAGGTTAATGATATGTAGATT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1620556 855 + 32716333 TTCTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCATGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAAGTG--GACT----TTTTGGATGGTACCGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCA--------GCCCTGAAGA-TCTCTTCC-GCACCCCGCAAATGACACTAACATTATGAAAAATTCCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACCCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAACTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTCATTATCATCAGGCAGTGATGAGTCCTGGGGAAAGTATGGATCTTAAATTCGAGGATCCAGAAGCCTAATCGAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAATTGTAGCAAAACCCTGTGCCAAT-Attgtgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcacaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCGCAT-GAAGTCATGAGAACGATTTGTAAAGGCTCCTTTGATTG------CTAAATTCACTTATTCTGGGATAG--TGTTCTCACA----------ATGACTCTATGAGGCAAATATTACATTGCTGA--TTTTTTTT-----ACTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152685164 866 - 185818997 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAGGTG--GACT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCAGCACCGCTGCCCTGAAGA-TCTCTTCC-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAT-ATTGCgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcagaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT--AAGTCATGAGAACGATTTCTAAAGGCTCCTTTGATTG------GTAAATTCTCTTATTCTGGGATAA--TGCTCTCACA----------ATGATTCCATGAGGCAAATATTATATTGCTGA--TTTTTTTTTAAAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159493238 868 - 192294377 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAGGTG--GACT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCAGCGCCGCTGCCCTGAAGA-TCTCTTCC-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAGCAC-ATGAAAGGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAT-ATTGCgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcagaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT--AAGTCATGAGAACGATTTCTAAAGGCTCCTTTGATTG------GTAAATTCTCTTATTCTGGGATAA--TGCTCTCACA----------ATGATTCCATGAGGCAAATATTATATTGCTGATTTTTTTTTTTTAAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5938087 867 + 9440265 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAGGTG--GACT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCAGCGCCGCTGCCCTGAAGA-TCTCTTCC-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAT-ATTGCgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcagaaggctctgat----ggtcttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT--AAGTCATGAGAACGATTTCTAAAGGCTCCTTTGATTG------GTAAATTCTCTTATTCTGGGATAA--TGCTCTCACA----------ATGATTCCATGAGGCAAATATTATATTGCTGA-TTTTTTTTTTTAAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5682349 866 + 21915920 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACTATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAGGTG--GACT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCAGCGCCGCTGCCCTGAAGA-TCTCTTCC-GCACCCTGCAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGAAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAATAAAACTGTAGCAAAACCCTGTGCCAAT-ATTGCgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcagaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTTGCATAGATCCTTTATTTCACAT--AAGTCATGAGAACGATTTCTAAAGGCTCCTTTGATTG------GTAAATTCTCTTATTCTGGGATAA--TGCTCTCACA----------ATGATTCCATGAGGCAAATATTATATTGCTGA--TTTTTTTTTTAAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12319046 864 - 90373283 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-ACCTTTGCCTAGGTG--GACT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCGAGCAGGCAGCGCCGCTGCCCTGAAGA-TCTCTTCC-GCACCCTGCAAATGACACTACCATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCCT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTGTGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAGCAC-ATGAAATGGATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAGAACCCTGTGCCAAT-ATTGCgattcattttcactttg--ctcatcaaa----------------------------------------atgttgtttcagaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGTATAGATCCTTTGTTTCACAT--AAGTCATGAGAACGATTTCTAAAGGCTCCTTTGGTTG------GTAAATTCTCTTATTCTGGGACAA--TGCTCTCACA----------ATGATTCCATGAGGCAAACATTATATTGCTGA----TTTTTTTTTAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 661152 865 + 1337817 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACCATTTGGCAAGAAAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGTCTAGGTG--GACT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCGGGCAGGCAGCGCCGCTGCCCTGAAGA-TCTCTTCC-GCACCCTGCAAATGACATTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAGCAC-ATGAAATTAGTCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAT-ATTGCgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcagaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGCATAGATCCTTTATTTCACAT--AAGTCATGAGAACGATTTCTAAAGGCTCCTTTGATTG------GTAAATTCTCTTATTCTGGGATAA--TGCTCTCACA----------ATGATTCCATGAGGCAAATATTATATTGCTGA---TTTTTTTTTTAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 630394 867 - 3237654 TTGTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCGTGTATACCATTTGGCAGGAAAGAGTCATTGGCATGTCCTTGGATGA-CCTCTTGTCTAGGTG--AACT----TTTTGGATGGTACTGTTGATCAATGGGGGTTTTGTAGGCGGGAAGGCAGCACCACTGCCCTGAAGA-TCTCTTCC-GTACCCTGCAAATGACACTAACGTTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GGTTCTATGCCAGCCAAGAAGACTCCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTT-CAATGAGATGGTTCTTGCAGTGACAGCAGATCTACTGTGCATGTTTGATTTAAAGCGCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATCCAGAAGCCCAATCAAAATGCAACAC-ATGAAACGAATCTTTCTTCTTGGTATATCTC-------CTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACAGTAGCAAAACCCTGTGCCAAT-Attgtgattcgttttcactttg--ctaatcaaa----------------------------------------atgttgttttagaaggctctgat----ggtgttcaagacaccttataagAGGTATGATTTTTCTTTAAGTTGGCTTGCATAGATCCTTTATTTCACAT--AAGTCATGAGAACAATTTCTAAAGGCTCCTTTGATTG------GTAAATTCTCTTATTCTGGGATAA--TGCTCTCACA----------ATGATTCCATGAGGCAAACATTATATTGCTGA-TTTTTTTTTTTTAATTTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19168817 860 + 50472720 TTCTCTC---------------------------------------------------------------------------------AGAGATGCTTTGCTCATGTATACCATTTGGCAAGAGAGAGTCACTGGCATGTCCTTGGATGA-CCCCTTGCCTAAGTG--GAGT----TTTTGGATGGTATTTTTGATCAATGGGGGCTTTGTAGGCAGACAGGCAGCACTGCTGCCCTGAAGATTTTCCTCA-GCACCCTGAAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACACTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGATA-GTTTCTATGCCAGCCAAGAAGACGGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGAACTTAAATTCTAGGATCAAGAAGCCTCATCAAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTTGTATAGCTC-------TTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAA-Attgtgattcattttcactttg--ctaatcaaa----------------------------------------atgttgtttcacaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGTGAAGATCCTTTATTCCATATAGAAGTCATGAGAACGATTTGTAAAGGCTCCTTTGATTG------GTAAATTCTCTTCTTCTTGGATAG--TGCTCTCACA----------ATGATTCTATGGGACAAACGTTATACTGCTGA--CTT----------ATTTGCTGTGTCTTAAGGTTAATGATATGTAGACT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2508783 860 + 13128814 TTCTCTC---------------------------------------------------------------------------------AGAGATGCTTTGCTCATGTATACCATTTGGCAAGAGAGAGTCACTGGCATGTCCTTGGATGA-CCCCTTGCCTAAGTG--GAGT----TTTGGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCAGCCAGGCAGCACTGCTGCCCTGAAGATTTTCCTCA-GCACCCTGAAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACAGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGAGGAAAGTATGAAACTTAAATTCTCGGATCAAGAAGCCTCATCAAAATGCAGCAC-ATGAAATGAATCTTTCTTCTTGGTATAGCTC-------TTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAA-Attgtgattcattttcactttg--ctactcaaa----------------------------------------atgttgtttcacaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGCTGAAGATCCTTTATTTCGTATGGAAGTCATGAGAACGATTTGTAAAGGCTCCTTTGATTG------GTAAATTCTCTTCTTCTTGGATAG--TGCTCTCACA----------ATGATTCTACGGGGCAAACGTTATACTGCTGA--CTT----------ACTTGCTGTTCCTTAAGGTTAATGATATGTAGGCT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7046468 860 - 14377064 TTCTCTC---------------------------------------------------------------------------------AGAGATACTTTGCTCATGTATACCATTTGGCAAGAGAGGGTCATTGGCATGTCCCTGGATGA-CCCCTTGCCTAAGTG--GAGT----TTTTGGATGGTACTGTTGATCAATGGGGGCTTTGTAGGCAGCCAGGCAGCACTGCTGCCCTGAAGATTTTCCTCA-GCACCCTGAAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGATGGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCGTGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGAACTTAAATTCTAGGATAAAGAAGCCTCATCAAAATGCAGCTC-ATGAAATGAATCTTTCTTCTTGGTGTAGCTC-------TTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAA-Attgtgattcattatcactttg--ctaatcaaa----------------------------------------atgttgtttcacaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGTGAAGATCCTTTATTTCGTATGGAAGTCATGAGAACAATTTGTAAAGGCTCCTTTGATTG------GTAAATTCTCTTCTTCTTGCATAG--TGCTCTCACA----------ATGATTCTATGGGACAAACGTTATACTGCTGA--CTT----------ATTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6094123 859 + 9889416 TTCTCTC---------------------------------------------------------------------------------AGAGATGTTTTGCTCATGTATACCATTTGGCAAGAGAGAGTCATTGGCATGTCCTTGGATGA-CCCCTTGCCTAAGTG--GAGT----TTTTGGATGATACTGTTGATCAATGGGGGCTTTGTAGGCAGCCAAGCAGCACTGCTGCCCTGAAGATTTTCCTCA-GCACCCTGAAAATGACACTAACATTATGAAAAATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTA-GTTTCTATGCCAGCCAAGAAGACAGCTCTGCCAGTTGAAAGGCAAGCACATC---CTTCCCTGCCAGCTTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAAAGCCCTCCATTACCATACCTTTGTAATTATCATCAGGCAATGATGAGTCCTGGGGAAAGTATGGAACTTAAATTCTAGGATCAAGAAGCCTCATCAAAATGCAGCAC-ATGAAATGAATCTTTCTTCTT-GTATAGCTT-------TTCTTTTCAACCAATTGGTCTTGATTTAAGTAAAACTGTAGCAAAACCCTGTGCCAAA-Attgtgattcattttcactttg--ctaatcaaa----------------------------------------atgttatttcacaaggctctgat----ggtgttcaagacaccttatAGGAGGTATGATTTTTCTTTAAGTTGGCTGGTGAAGATCCTTTATTTCATATGGAAGTCATGAGAATGATTTGTAAAGGCTCATTTAATTG------GCAAATTCTCTTCTTCTTGGATAG--TGCTCTCACA----------ATGATTCCATGGGACAAACGTTATACTGCTGA--CTT----------ATTTGCTGTTCCTTAAGGTTAATGATATGTAGACT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16867361 842 + 47401472 TTTTCTC---------------------------------------------------------------------------------AGAGACACTTTGCTCATGTATACTATTTGGCAAAGGAGGATCACTGGCATATCGCTGGATGG-CCCCTCATCTAAGTG--GACT----GTTTGGATGGCACTGTTGATCAATGGGGGCTTTGCAGGCAGCCAGGCAGCACTGCTGCCCTGGAGATCTTCCTTG-GCAACCTGCAAATGACACTAACATTATGAAAGATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGCAGAGCTAGGTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTT---------GCACATC---CTTCCCTGCCAGCCTGCAATGAGATGGTTCTTGCAGTGACAGCAGATCTACCATGCATGTTTGATTTAGGGCTCTCCATTACCATACCTTTGTAATTATCATCAGGCAGTGATGACTCCTGGGGAAAGTATGGATCTTAAATTTGAGGATTCAGAAGCCTAATCAAAATGCAGCAT-GTGGAATGAA----TCTTATTGGTATTTCTC-------TTCTTTTCAACCAGTTGGTCTTAATTTGAGTAAAACCGTAGTACAACCCTTTGCCAAT-ATTGTGATTCATTTTCA------------CACT----------------------------------------TTGTTGTTCCACAAGGCTCTGAT----GGTGTTCAAGACACCTTAGAGGAGGTATGATTTTTCTTTAAGTTGTCTGGCATAGATTCCATATTTCACCT-GAAGTCATGAGAAAAATTTGTAAAGCCTCCTTTAATTG------CTATGTTCTCTTATTCTGGGTTAG--TGTTCTCACC----------ATGATTCTGAAAGACAACCATTATATTGTTGA--TATTTTTTA----TTTTGCTGTTACTTAAGA-TAATGATGTGTAGACT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18356316 843 - 38779656 TTTTCTC---------------------------------------------------------------------------------AGCGACACCTTGCTCATGTGTACCATT-------GGAGGATCCTCGGCATACCAGTGGATGG-CCCCTGGTCTCAGTG--GACT----CTGTGCATCGTCTTGTTGATCAATGGGGTCTTTGCAGGCAGCCAGGCCGTGCAGCTGCCCTGGAGGTCTTCTTTG-GCAACCTGAAAATGACACTAACATTATGAAAGATTTCTCCAAAGACAGACATTT----------------------------------------TCAATTAGCCAAATTACTCTAACAGTAATTTAAATCAGGAAGATTTAAGGGAGAGCTA-GTTCCTATGCCAGCCAAGAAGACTGCTCTGCCAGTTAAAAGACAAGCACATC---CTTCCCCGCCAGCCTGCACTAAGATGGTTCTTGCAGCGACAGCAGATCTCCCATGCCTG--TGATTTAAGGCTCTGCATTACCATACCTTTGTAATTATCATCCAGTGACAATGAGTCCTGGGGAAAGTATGGGTCTTTAATTTGAGGATTCAGAAGCCTAATCAAAACATAGCAT-ATACACTGAA----TCTTATTGGTATTTCCCTTTTTTTTTTTTTTCAGCCAATTGGTCTTAATTTGAGTACAAATGTAGCCCAACCCTTTGCCAAT-GTTTTGATTCATTTTGA------------CAAA----------------------------------------ATGTTTTTCCACAAGGCTCTGAT----GGTGTTCAAGTCACCTCATAGGAGGTTTAATTTTTCTTTAACTTGGCTAGCATAGATCCCATATTTCACCT-GAAGTCATGAGAAAAATTTGTAAAGCCTTCTTTGATTGGTACCTATATGTTCCCTTATTTTGGGTTAG--TGCTTTCACT----------GTGATTCTGACAGACAGACACTATATTGATGG--TACTTTTTA----TTTTGCTGTTACTTAAGA-TGATG----------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75843685 886 + 98207768 TCCTCCC---------------------------------------------------------------------------------AAAGCTGTTTTGCTCATGTGTACTATTTGGCAAGAGAGAGTAGCTGGCCTGCCATCAGATGG-TCCCTTGTTTTCGTGTCTACTACGGCTTTGGCTGCTGCTATCGATCAGTTGGGGATTTGCCGGCAGCCAGGTAGTGCTACTGCCCTGGAGA-TCTCCCCTAGCAACCTGCAAATGATACTGACACCATGAAAGATTTCTTCACAGACAGACGTTT----------------------------------------TCAATTAACCAAATTACTCTAACAG-GGCGTAGCTCAGGAAGATTTAAGGCAGCCCTG-GTTGCTATGCCAGCCAAGGATCCTGCTCTGCCAATTGAAAGGCAAGCACATC---CGTCCCTGCCAGCTTGCAGGGAGATGGTTCTTGCAGTGATAGCAGATCTACCATGCAGGTTTGATTTAAGGCACTCTATTACCATGCCTTTGTAATTATCATTAGGTAATGATGAGTCCCTGGGAAAGTGGGGATCTTAAATTTGAGGCTCCATGAGCCTAATCAAAATGTACTGTGGTGAAATGAA----TTTTCTTGGTA----AC-------TTCCTTTTAACTAATTAGTCTTCGTTTGCAAAAGAATG-AAAATAACCTTTAGCTGATCATTTTGATTCAATTTCACTTTTCCCTATTTAAAAAatatgtctatacatatatatatatatatatatatatatatataGTATCACAAGGCTGTGACAAAGGGTCCTCAAGACCCCTTCCAGGAAAC----TTCACAGCTAAGTTTATTGGCATAAATCCTGCGTTTCATAG-AAAGCTCTGGGAA-GATTTTTGAGA-------------------GTACATTTTCTTACTTTAGGATGGGTTGCACACACA----------ATGATTCTAAAAGTCGAGCA-TACGCTGCTAT--TTT----------TTATTCAATTACTTAACATAATCAATATTTAGACT i mm10.chr16 C 0 I 706 s canFam3.chr31 11470178 978 + 39895921 ttctctctccgtttggccctcccccttactcatactctctcaaataaataaatatatatatatatatatatatatttttttcttttataaagaaaCTTTGCTCACATATAACTTTTGTCAAGAATGGATGGCTGGCAGATC-TTGAATGGCCCCCTCGTCTGAGTG--GACT----CTTTGGACGGGACTGTTGATGAGCAGGGGCTTTGTAAGCAGCCAGGCAACACTGTAGCCCTAGAAATCTTCCTCA-GCAGCCTGCAAATGGAGCAAATGTTATGAAAGATTTCTCCAAAGATGGGCATTTTAAATTAGCCaaattaaaaaaaaaataaaaaaaataaaaataaaTTAGCCAAATTACTCTAATAG-GGCATATCTCAGGAAGATTTAAGGCAGAGCTG-GTTTCTGTGCCAGCCAG------------------TCAAAGGCAAGTGCAACCAACTTCCCTGCCAGCTTGCAATGAGATGGTTCTTGCAGTGACAGCACATCTACCATGCATGCTTGATTTAAGGCCCTCTATTACCATACCTTTGTAATTATCATCAGATGATGATGAGTCCTGGGACAAGTATAAGTCTTAAATGTGGAGATCCAGGAGCCTAATCAAAATGCAGAGC-ATAGACTATATTTTTCTTCTTGATGTTTCAC-------CTCTTTTCAAACGATTGTTATTGGTTTGAGTAAAACTATAGCACAACTCTTTGCCAGTAATTGTGATTCATTTTCACTTTG--GTAATCAAA----------------------------------------ATGT-ATTTCATAAGGTTCTGAT----GTTGTTCAAGAC-TCTTATAGGAGGTATGACTTTTCTCAGAGTTGACTAGCATAGATTTTGTATTTTACAT-GCAGCTGTGGGAAAGATTTGTAAAACCTCCTTTGGTTT------ATA-ATTCTCTTATTCTGGGTTAG--CATTCTCATGGATTCTTATCAGAATTCTACAAGGCATACATTATATTGCTGA--TATTTTCTA----TTTTGTTGTTATGTTGGGTCAAAGATATCTAGATT i canFam3.chr31 I 132 C 0 s dasNov3.JH568778 673070 816 - 6883506 TCCTCAC---------------------------------------------------------------------------------AAAGCCACTTTG-----------------GCAAGAGGGGATGACTGGCAGGTCATTAGATGG--CCCTGGTCTCAGTG--GACT----CTTGGGATGGTTCCATTGATCAA--------------GCAGTCAGGCAGCACTGCAGTTGTGGAGATTTTCCTTG-GCAATCTGAAAATGGCACTAACATTATGAACGATTTCTCCAAAGACTGACGTTT----------------------------------------TCAATTAGCTGAATTACTCTAATAGGGA-GTATCTCAGGAAGATTTAAAACAGAGCTA-GATGCTGTGCCAGCCAAGAGTCCTACTCTGCCAGTTGAACAGCAAGCATATG---CTTCTCAGCCAGCTTGCAATGAGATGGTTCTTACCATGGCA------------TGCATGTTTGATTGAAGGCCCTCAATTACCATATCTTGGTAGTTATCATCAAGCAGTGATGAGTGCTGGAGACAGTATGCGTCTTCAGTGGAAGGATCCAGGATCCTAATCAAAAAGCAGAGT-GTGGAATGACTCTTTCTTCTTAATGTTTCAT-------CCCTTTTCAACTAATTGGTCTTGGTTTGAGTAAAACTGTAAC--AATCCTTTGCCAAA-AATTGGGATTATCTTCACTTTG--CTAATCAAA----------------------------------------ATGTGGTATCACAAGGCTCTGAT----GATGTTCAAGACACCTTATAGGAGGTATGATTTTTCTCTAAGCTGGTTGGCTTAGATCCCATATTTCACAT-TAAGTTGTGGGAAAGATTTGTAGAGCTTTCTTTCAC--------ATACATTCTCTAATTCTGGACCAA--CAATCTCACA----------AGGATTCTAAATAGCAAATGTTATATTGCTTA--TATTTTAAA----TTTTGTTGTTAATTGAGATCTAGGATTTCTAGACG i dasNov3.JH568778 C 0 C 0 a score=25733.000000 s hg38.chr21_GL383578v2_alt 58828 2 + 63917 AC s panTro5.chr21 896322 2 + 33445071 AC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14580954 2 + 46275980 AC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 493090 2 - 13858734 AC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1621411 2 + 32716333 AC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152686030 2 - 185818997 AC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159494106 2 - 192294377 AC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5938954 2 + 9440265 AC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5683215 2 + 21915920 AC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12319910 2 - 90373283 AC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 662017 2 + 1337817 AC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 631261 2 - 3237654 AC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19169677 2 + 50472720 AC i calJac3.chr21 C 0 I 292 s saiBol1.JH378168 2509643 2 + 13128814 AC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7047328 2 - 14377064 AC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6094982 2 + 9889416 AC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16868203 2 + 47401472 AT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18357159 2 - 38779656 AT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11471156 2 + 39895921 AG i canFam3.chr31 C 0 I 1 s dasNov3.JH568778 673886 2 - 6883506 AT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75844571 706 + 98207768 I a score=25035.000000 s hg38.chr21_GL383578v2_alt 58830 6 + 63917 TCTAAA s panTro5.chr21 896324 6 + 33445071 TCTAAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14580956 6 + 46275980 TCTAAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 493092 6 - 13858734 TCTAAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1621413 6 + 32716333 TCTAAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152686032 6 - 185818997 TGTAAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159494108 6 - 192294377 TGTAAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5938956 6 + 9440265 TGTAAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5683217 6 + 21915920 TGTAAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12319912 6 - 90373283 TGTAAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 662019 6 + 1337817 TGTAAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 631263 6 - 3237654 TGTAAA i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2509645 6 + 13128814 TGTACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7047330 6 - 14377064 TGTACA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6094984 6 + 9889416 TGTACA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16868205 6 + 47401472 TTTGAT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18357161 6 - 38779656 TATGAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11471159 3 + 39895921 GGT--- i canFam3.chr31 I 1 C 0 s dasNov3.JH568778 673888 5 - 6883506 TTTAT- i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75844571 706 + 98207768 I e calJac3.chr21 19169679 292 + 50472720 I a score=1226405.000000 s hg38.chr21_GL383578v2_alt 58836 92 + 63917 TCTACCTTTTTCCTACCTAGGGACTGTATGTTATTTA-GAA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGCGAGGTTGCTTT--TTCTTTAT s panTro5.chr21 896330 92 + 33445071 TCTACCTTTTTCCTACCTAGGGACCGTATGTTATTTA-GAA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGCGAGGTTGCTTT--TTCTTTAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14580962 92 + 46275980 TCTACCTTTTTCCTACCTAGGGACCGTATGTTATTTA-GAA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGCGAGGTTGCTTT--TTCTTTAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 493098 92 - 13858734 TCTACCTTTTTCCTACCTAGGGACCGTATGTTACTTA-GGA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGCGAGGTTGCTTT--TTCTTTAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1621419 92 + 32716333 TCAACCTTTTTCCTACCTAGGGACCATATGTTATTTA-GGA--------------AACATAAATTTCAGAAGATTTGTAAGGATGAGTGAGGTTGCTTT--TTCTTTAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152686038 92 - 185818997 TCTGCCTTTTTTCTACCTAGGGACTGTATGTTATTTA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159494114 92 - 192294377 TCTGCCTTTTTCCTACCTAGGGACTGTATGTTATTTA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5938962 92 + 9440265 TCTGCCTTTTTCCTACCTAGGGACTGTATGTTATTTA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5683223 92 + 21915920 TCTGCCTTTTTCCTACCTAGGGACTGTATGTTATTTA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12319918 92 - 90373283 TCTGCCTTTTTCCTACCTAGGGACTGTATGTTATTTA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGTGAGGTTGCTTT--TCCTTTAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 662025 92 + 1337817 TCTGCCTTTTTGCTACCTAGGGACTGTATGTTATTTA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 631269 92 - 3237654 TCTGCCTTTTTCCTACCTAGGGACTGTATGTTATTAA-GGA--------------AACAAAAATTTCAGAGGATTTGTAAGGATGAGTGAGGTTGCTTT--TTCTTTAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19169971 92 + 50472720 TCTACCTTTTTCATACCTATGGAGTATATGTTGTTTA-GGA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAA i calJac3.chr21 I 292 C 0 s saiBol1.JH378168 2509651 92 + 13128814 TCTACCTTTTTTGTACCTATGGACTGTATGTTGTTTA-GGA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7047336 92 - 14377064 TCTACCTTTTTCCTACCTATGGACTGTATGTTGTTTA-GGA--------------AACGTAAATTTCAGAGAATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6094990 92 + 9889416 ACTACCTTTTTCCTACCTATGGACTGTATGTTGTTTA-GGA--------------AACATAAATTTCAGAGGATTTGTAAGGATGAGAGAGGTTGCTTT--TTCTTTAT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16868211 90 + 47401472 TCTACTTTCTTCCTGCCTAGGGACTGTATCTTATTTAGGGA--------------AAAAAA---TTCAAAGCATTTGTAAGGATGAGAAAAGTTACTTT--TTCATGAT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18357167 85 - 38779656 TCTACTGT----CTACCTATAGACTATATGTTATTTC-GGA--------------AACAAA---TTTAAAGTATTAGTAAGGGTGAGAAAAGTTACTTT--TTCTTGAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11471162 106 + 39895921 TCTACTTTTTTCCTAGTTAGGGATAATATATTATTGT-GTAACATATGTATGTATACCATAGATTTCAGAGGATTTGTATGGGTAAGAGAAATTACTTT--TTCTTGAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 673893 90 - 6883506 TCTAC-TTTTTAATAGCTAGGGACCATATATTATTTA-GGA----------------CACAAATTTCAGAGGATTT-TCACAATGAAAGAAGTTGCTTTTATTTTTTAT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75844571 706 + 98207768 I a score=8186597.000000 s hg38.chr21_GL383578v2_alt 58928 653 + 63917 AAGATCTAAC-TTCAATTAGCAACATTTTGTTAAA-TATCTAACTTTGCCCATTGCCCAGTGCTTTACTTATAGTTAAgcaacatggtgt-gaagaa-agaggcataggcttaattcc---agat---ctcagtacaaatctgaattcttcttacttgtaaattggtgtgaccatg----gatagatatctttacccctctaccatcccaaatctctcctac----aatatggtggtattgaaactgaccctctctagttcctctccatctttgacacctatgattctatgaATATGGGA-AT-TCTCCT-CTTGAAGAATTAACCATCAGCCCCCATGTTTAGTACTTACTATATAATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCAAATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGAG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAATTG-----GCTCCTTTTGGTTTGGGGAATAGTATCCTTCACTGGGACACCTTTATCTAATAGGCTCATTTAGCCTTTAACACTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTACCAGCCAGATGATAAGTTCTTGTA s panTro5.chr21 896422 653 + 33445071 AAGATCTAAC-TTCAATTAGCAACATTTTGTTAAA-TATCTAACTTTGCCCATTGCCCAGTGCTTTACTTATAGTTAAgcagcatggtgt-gaagaa-agaggcataggcttaattcc---agat---ttcagtacaaatctgaattcttcttacttgtaaattggtgtgaccatg----gatagatatctttacccctctaccatcccaaatctctcctac----aatatggtggtattgaaactgaccctctctagtccctctccatctttgacacctatgattctatgaATATGGGA-AT-TCTCCT-CTTGAAGAATTAACCATCAGCCCCCATGTTTAGTACTTACTATATAATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCAAATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGAG--ATGTATCAGCATTATTCTT----AAATTCATAGACTCAGGGTTAGAAT-----GGAATTG-----GCTCCTTTTGGTTTGGGGAATAGTATCCTTCACTGGGACACCTTTATCTAATAGGCTCATTTAGCCTTTAACACTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCtgccttaccagctagatgataagttcttgta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14581054 653 + 46275980 AAGATCTAAC-TTCAATTAGCAACATTTTGTTAAA-TATCTAACTTTGCCCATTGCCCAGTGCTTTACTTATAGTTAAgcagcatggtgt-gaagaa-agaggcataggcttaattcc---agat---ctcagtacaaatctgaattcttcttacttgtaaattggtgtgaccatg----gatagatatctttacccctctaccatcccaaatctctcctac----aatatggtggtattgaaactgaccctctctagttcctctccatctttgacacctatgattctatgaATATGGGA-AT-TCTCCT-CTTGAAGAATTAACCATCAGCCCCCATGTTTAGTACTTACTATATAATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCAAATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGAG--ATGTATCAGCATTATTCTT----AAATTCATAGACTCAGGGTTAGAAT-----GGAATTG-----GCTCCTTTTGGTTTGGGGAATAGTATCCTTCACTGGGACACCTTTATCTAATAGGCTCATTTAGCCTTTAACACTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCtgccttaccagctagatgataagttcttgta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 493190 653 - 13858734 AAGATCTAAC-TTCAATTAGCAACATTTTGTTAAA-TATCTAACTTTGCCCATTGCCCTGTGCTTTACTTATAGTTAAgcagcatggtgt-gaagaa-agaggcataggcttaattcc---agat---ctcagtacaaatctgaattcttcttacttgtaaattggtgtgaccatg----gatagatatctttacccctctaccatcccaaatctctcctac----aatatggtggtattgaaactgaccctctctagttcctctccatctttgacacctatgattctatgaATATGGGA-AT-TCTCCT-CTTGAAGAATTAACCATCAGCCCCCATGTTTAGTACTTAGTATATAATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCAAATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGTG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAATTG-----GTTCCTTTTGGTCTGGGGAATAGTATCCTTCACTGGGACACCTTTATCTAATAGGCTCATTTAGCCTTTAACACTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCtgccttaccagctagatgataagttcttgta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1621511 650 + 32716333 AAGATCTAAC-TTCAGTTAGCAACATTTTGCTAAA-TATCTAACTTTGCCCACTGCCCTGTGCTTTACTTATAGTTAAGTAagagtgtgt-gaagaa-agaggcataggcttaattcc---agat---ctcagcacaaatctgaattcttcttacttgcaaattggtgtgaccatg----gatagatatctttacccctctaccatcccaaatctctcctac----aatatggtggtattggaattgaccctctctagttcccctccatctttg--acctgtgattccataaATATGGGA-AT-CCCCCT-CTTGAAGAATTAACCATCAGCCCCCATGTTTAGTACTTAGTAAATAATTTTGT---TTAAACAGTTATTTATGACATTCTAGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGAG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAACTG-----GCTCCTTTTGGTGTGGGGAATAGTATCC-TCAGTGGGACACCTTTATCTAATAGGCTCATTTAGCCTTTAACACTTGCCCAC--TTTGTATTACTGTATTAAATACAGAGT-GCTGCCTTACCAGCTAGATGATAAGTTCTTGTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152686130 650 - 185818997 AAGGTCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-ggaggctgagatttaattcc---agat---ctcagcacaaatctgaattcttcttacttgcaaattggtgtgaccatg----gatagatatcttta-ccctcttccatctcaaattt-tcgtgc----aatatggtggtattggaatagaccctctctaggtcccctccgtctttgacacctgtgattccatgaATATGGGA-AT-CCTCCT-CTTGAAGAATGAACCATCAGCCCCCAAGTTTACTACTTAGTATACGATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAACTG-----GCTCCTTCTGGCTGGGGGAATAGTATCC-TCACCGGGACACCTGTATCTAATAGGCTCATGTAGCCTTTAACATTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTGCCAGTTGAATGATAAGTTCTTGTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159494206 650 - 192294377 AAGGTCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAGCAGCATGATGT-GAAGAA-GGAGGCTGAGATTTAATTCC---AGAT---CTCAGCACAAATCTGAATTCTTCTTACTTGCAAATTGgtgtgaccatg----gatagatatcttta-ccctcttccatctcaaattt-tcgtgc----aatatggtggtattggaatagaccctctctaggtcccctccgtctttgacacctgtgattccatgaATATGGGA-AT-CCTCCT-CTTGAAGAATGAACCATCAGCCCCCAAGTTTACTACTTAGTATACGATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GCAACTG-----GCTCCTTCTGGCTGGGGGAATAGTATCC-TCACCGGGACACCTGTATCTAATAGGCTCATGTAGCCTTTAACATTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTGCCAGTTGAATGATAAGTTCTTGTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5939054 650 + 9440265 AAGGTCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-ggaggctgagatttaattcc---agat---ctcagcacaaatctgaattcttcttacttgcaaattggtgtgaccatg----gatagatatcttta-ccctcttccatctcaaattt-tcgtgc----aatatggtggtattggaatagaccctctctaggtcccctccgtctttgacacctgtgattccatgaATATGGGA-AT-CCTCCT-CTTGAAGAATGAACCATCAGCCCCCAAGTTTACTACTTAGTATACGATTTTGT---TTAAACAGTTATTTATGACATTCTCGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAACTG-----GCTCCTTCTGGCTGGGGGAATAGTATCT-TCACCGGGACACCTGTATCTAATAGGCTCATGTAGCCTTTAACATTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTGCCAGTTGAATGATAAGTTCTTGTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5683315 650 + 21915920 AAGGTCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-ggaggctgagatttaattcc---agat---ctcagcacaaatctgaattcttcttacttgcaaattggtgtgaccatg----gatagatatcttta-ccctcttccatctcaaatct-tcgtgc----aatatggtggtattggaatagaccctctctaggtcccctccatctttgacacctgtgattccatgaATATGGGA-AT-CCTCCT-CTTGAAGAATTAACCATCAGCCCGCAGGTTTACTACTTAGTATACGATTTTGT---TTAAACAGTTATTTATGACATTCTTGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATACATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAACTG-----GCTCCTTCTGGTTTGGGGAATAGTATCC-TCACCAGGACACCTGTATCTAATAGGTTCATGTAGCCTTTAACATTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTGCCAGTTGAATGATAAGTTCTTGTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12320010 649 - 90373283 AAGATCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAGCAGCATGATGT-GAAGAA-GGAGGCTGAGATTTAATTCC---AGAT---CTCAGCACAAATCTGAATTCTTCTTACTTGCAAATTGgtgtgaccatggatagatagatatcttta-ccctcttccgtctcaaatct-tcctat----aatacggtggtattggaatagaccctctctaggtcccctccatctttgacacctgcgattcC-TGAATATGGGA-AT-CCCCCT-CTTGAAGAATTAACCATCAGCCCCCAAGTTTACTACTTAGTATACAATTTTGT---TT----AGTTATTTATGACATTCTAGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTAGAAT-----GGAACTG-----GCTCCTTCTGGTTTGGGGAATAATATCC-TCACTGGGACACCTGTATCTAATAGGCTCATGTAGCCTTTAACATTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTGCCAGTTGAATGATAAGTTCTTGTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 662117 650 + 1337817 AAGGTCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-ggaggctgagatttaattcc---agat---ctcagcacaaatctgaattcttcttacttgcaaattggtgtgaccatg----gatagatatcttta-ccctcttccatctcaaatct-tcgtgc----aatatggtggtattggaatagaccctctataggtcccttccatctttgacacctgcgattccatgaATATGGGA-AT-CCCCCT-CTTGAAGAATTAACCATCAGCCCCCAAGTTTACTACTTAGTATACAATTTTGT---TTAAACAGTTATTTATGACATTCTTGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATATATCAGCATTATTCTT----ATATTCATAGACTCAGGGTTATAAT-----GGAACTG-----GCTCCTTCTGGTTTGGGGAATAGTATCC-TCACTGGGACACCTGTATCTAATAGGCTCATGTAGCCTTTAACATTTGCCCAC--TTTGTATTACTATATTAAATACAGAGT-GCTGCCTTGCCAGTTGAATGATAAGTTCTTGTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 631361 650 - 3237654 AAGATCTAAT-TTCAATTAGCAGCATTTTGTTAAA-TATCTAACTTTGTCCATTGCCCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-ggaggcttaggcttaattcc---agat---ctcagcacaaatctgaattattcttacttgcaaattggtgtgaccatg----gatagatatcttta-ccttcttccatctcaaatct-tcctac----aatatggtggtattggaatagaccctctctaggtcccctccatctttgacacctgtgattccatgaATATGGGA-AT-CCCCCT-CTTGAAGAATTAACCATCAGCCCCCAAGTTTACTACTTAGTTTACAATTTTGT---TTAAACAGTTATTTATGACATTCTAGCAATGCATATTTAGGAACCCTTTTCTTCCAGGACTTCTCTTCCACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGGG--ATATATCAGCATTATTCTT----ATGGTCATAGACTCAGGGTTAGAAT-----GGAACTG-----GCTCCTTCTGGTTTGGGGAGTAGTATCC-TCACTGGGACACCTGTATCTAATAGGCTCATGTAGCCTTTAACATTTGTCCAC--TTTGTATTACTATATTAAATACAGAGT-ACTGCCTTACCAGTTGAATGATAAGTTCTTGTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19170063 609 + 50472720 AAGATCTAAC-TTCAATTAGCAACATTTTGTTAAA-TATCTAACTTTGCCCAGTGCCCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-agaagcataggcttaattcc---agat---ctcagtacaaatctgaattcttcttacttgcaaactggtgtgaccatggatagatagatatccttacccctctactatctcaaatctctcctac----aatatggtggtgttgaaatata-cctttccaggtctcctccatctttgacacctatgattccatgaATATGGTA-AT-CCCCCT-CTTGAAGAAATAACCATCAGGCTCCAAGTTTAGTACTTAGTATATAATTTTGT---TAAAAAAGTTATTTATGACATTCTAGCAATGCATATTTAGGAGCCATTTTCTTCCAGGACTTCTCTTCAACCTGTCTTTTATTATTTCAGATAATGGAA---------ATCTGAAACCAAAAAGGG--ATATGTTAGCATTATTCTT----ATATTCATAGATTTAGGGTTAAAAT-----ATATTTG-----GCTCCTT-TGGTTTGGGGAATAGTATCC-TCACTCAGACATA---------------CATTCAG--------------------------------TATTACATACTGAAT-GCTGCCTTCCCAGCTAGATGATAAATTCTTATA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2509743 646 + 13128814 AAGATCTAAC-TTCAATGAGCAA-ATTTTGTTAAA-TATCTAACTTTGCCCAGTGCCCTGTGCTTTACTTGTAGTTAAGCAGCATTATGT-GAAGAA-AGAAGCATAGGCTTAATTCC---AGAT---CTCAGTACAAATCTGAATTATTCTTACTTGCAAATTGgtgtgatcatggatagatagatatctttacccctctactatctcaaatctctcctac----aatatggtgatgttggaatagaccctctccaggtcccctccatctttgacacctatgattccatgaATATGGTA-AT-CCCCCT-CTTGAAGAAATAGCCATCAGGCTCCAAGTTTAGTACTTAGTATATAATTTTGT---TAAAAAAGTTATTTATGACATTTTAGCAATGCATATTTAGGAGCCATTTCCTTCCAGGACTTCTCTTCTACCTGTCTTTTATTATTTCGGATAATAGAA---------ATTTGAAACCAGAAAGAG--ATATGTTAGCATTATTCTT----ATATTCGTAGACTCAGGGTTAAAAT-----AAAATTG-----GCTCCTT-TGGTTTGGGGAATAATATCC-TCACTGAGACACCTGT--------GGCTCATTTAGTTTTTAACATTTGCCCAC--TTTGTATTACTATATTACATACCGAGT-GCTGCCTTCCCAGCCAGATGATAAATTCTTACA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7047428 647 - 14377064 AAGATCTAAC-TTCAATTAGCAACATTTTGCTAAA-TATCTAGCTTTGCCCAATGCCCTGTGCTTTACTTATAGTTAAGCAGCATGATGT-GAAGAA-AGAAGCATAGGCTTAATTCC---AGAT---CTCAGTAAAAATCTGAATTCTTCTTACTTGCAAATTGgtgtgatcatggatagatagatatctttacccctctactatctcaaatctctcctac----aatatggtgattttggaatagaccctctccaggtccccttcatctttgacacctatgattccatgaATATGGTA-AT-CCCCCT-CTTGAAGAAATAACCATCAGGCTCCAAGTTTAGTACTTAGTATATAATTTTGT---TAAAAAAGTTATTTATGACATTCTAGCAATGCATATTTAGGAGCCATTTTCTTCCAGGACTTCTCTTCTACCTGTCTTTTATTATTTCAGATAATGGAA---------ATTTGAAACCAAAAAGAG--ATATGTTAGCATTATTCTT----ATATTCGTAGACTCATGGTTAAAAA-----AAAATTG-----GCTCCTT-TTGTTTGGGGAATAGTATCC-TTACTGAGACAGCTGT--------GGCTCATTTAATCTTTAACATTTGCCCAC--TTTGTATTACTATATTACATACCGagt-gctgccttcccagctagatgataaattcttata i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6095082 646 + 9889416 AAGATCTAAC-TTCAATTAGCAACATTTTGTTAAA-TATCTAACTTTGCCCAGTGCTCTGTGCTTTACTTATAGTTAAgcagcatgatgt-gaagaa-agaagcataggcttaattcc---agat---ctcagtacaaatctgaattcttcttacttgcaaattggtgtgaccatggatagatagatatctttatccctctactacctcaaatctctcctac----aatatagtggtgttggaatagatcctctccaggtcccctccatctttgacacctatgattccatgaATATGGTA-AT-CCCCCT-GTTGAAGAAATAACCATCAGGCTCCAAGTTTAGTACTTAGTATATAATTTTAT---TTAAAAAGTTATTTATGACATTCTAGCAATGCATATTTAGGAGCCATTTTCTTCCAGGACTTCTCTTCTACCTGTCTTTTATTATTTCAGATAATGGAA---------GTTTGAAACCAAAAAGGG--ATATGTTAGCATTATTCTT----ATATTCGTAGACTCAGGGTT-AAAT-----AAAATTG-----GCTCCTT-TTGTTTGGGGAATAGTATCC-TCACTGAGACACCTGT--------GGCTCATTTAGACTTTAACATTTGCCCAC--Tttgtattactatattacataccaagt-gctgccttcccagctagatgataaattcttata i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16868301 664 + 47401472 GAGACCTAAC-TTCAATTAGCAAAATTTTGTTACG-TATCTAACCTTGCCCAATATTTTATTTTCTACCTATGGTTAAgcagcaaagtatgaaggaa-agaggttaaggcttaattct---agat---ctcagtgcaaatctgaattctttttagttgcaagtagttgtgaccatg----gatagatctcttcactcctctactacctcaaatatttcccac----aactcggtggcattggaacagaccctctctaagtcccctacacctttgacattcatgattccatgaAGATGGGAGTC-CCTTCT-CTTGAGGAATTAACCATCAGCATCCAAGTACAATACTTATTATGTAATTTTTT---AAAAATAGTTATTTATAACACTCTAGTGACTAATATTTAGGAAACCTTTTCTCCTAGAACATCTCTTCTTCCTGTCTTGTGCTACTACAGATAATAGAAATTTTGGAAATTTGAAATCTAAAAAGGATATATATTAGCATTGTTCAC----AGAAACACAGACTCAAGTTGAGAAG-----GGGAATG-----GCTCCTTTTGGTTTGAGGACTATTATAA-CCACTGGGACACCTGTGCCTAATAGGCTCATTTAGCATTTGACATGTGCTCAC--TTTGTATTATCGTATTAAA-TTAGAGTCCCTGCCTTCCCATCTAGGTGATAGG-TCTTGTA i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18357252 660 - 38779656 GAGACCTAAC-TTCAGTCAGCAGTATTTTGTTCCA-TATCTATCTTTGCCCAATATCTTATTTTCTACCTATTGTGAAGGAGCGTAGTAT-AAGGTC-AGAGGTAGAGGATTAATTAT---AGATAACCTCGATGCAAATCTGAATTCTTTTTACTTGAACATAGgtgtgaccgtg----gatagaactctgcactcctctaccacctcacttactgcccac----aacgtggtggcgttggaacagaccctctccaggtcccctgtatc-ttgatattcctgattctatgaAGATGGGA-TC-CCTTCT-CTTGAATAATTCACCCTCATCTTTGCAGTATAATACTTAGCATATAATCTTTTTAACAAAATAACTCTTTGTAAATCTCTAGCGACTAATACTTAGGAACACTTTTCTCTCAGAACATCTCTTGTACCTGTCTTGTATTATTGCAGATAATGGAAATTTTGGAGATTTGACATCTAAAAAGG--ATATATCAGCATTTTTATT----AGATTCACAGACTTAGGTTGAGAAT-----GGGAATG-----ACTTCTTTTGGTTTG-GGACTGTTATAA-CTACTGGGTCACTTGTGTCTAGTAGGTTCAGTGA------GATACATGCCCAC--TTTGTATTATTATGTTAGGTTTAGAGTCTCTGCCTTACCAGCTACATAGTAAGTTCTTATA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75845277 630 + 98207768 aaattcTCAT-CTCAGTGGAGAGCATTTTGGTAAATTATCTAACTTTGTACTCCATTCTGT--CTTGTGTATGACCAGAGAGCATAGAAT-GAAGTA-A----TTTGAGCTTGATGCC---ATAT---CTCCACCCAAAGCTGAATCCTTCTTGCTTGTGAATAGATATATCTATC----CACAGACTGCTTCATCCCTCTGT--GCACAAAGCTCTCCTAT----GAAGTAGTGACACTGAATTAGACT--------ACACTCACTGTTTCAGATATCTGTCATTCCATTGGCAC---A-AC-CCTCTT-GTTGATGGATTAACCAACACCATGCAAACT--GTACTTAGTATATAATACAAT----AACACAGTTATCTAAAACTTGCTGTCAAT----ATTTAGAAACT-TTCAATCCCAGGACTTTACCCCTGC--------TATTATTAGAAATAATGGAAAATTTGGAAACTGGAAGTGAAAAGATG--AAACATGCATGTCTTTCTC----ATGTTTATAGGCACAAGGTTAGGAGTGATATGATATG-----GCTCTTTTTGGTTTGGGTACCATTATAA-CTGTAGAGATTCTTGTGTCTAA-ATGCTCACTTAATATTT---ATTTATTCATAATGTGTTTTACTATGCTGTATATTGAAT-GCTGACTTCTCAGTTAGCTAGCAAGACAATGCA i mm10.chr16 I 706 C 0 s canFam3.chr31 11471268 625 + 39895921 AAGACATAGCTTTTAGTCAGCA-TATTGTGTTAAA-TATTCAACTTTGCTTAGTGCCCTGTGTTCCACCCATGGTGAAgcaggttggtat-gaaggacagagacatgggcttaattccaggagat---ctcattgcaaatctgaactcttcttattagtgaataggtgtgaccatg----gataga--tctctattcctctag-gcctccaatctcttctac----aatatggtggcattggaatagactctcttcagttcccttccatgtctgacatctatgattccatgaAGACAAGA-GT-CTGTCTGCTTAAGGAGTTAACCATTAGCATCCAAG-----TATTCAGTATATAATTTCAT---AAAAATAGTTATTTATGACACTCAAATGACTACTATAT-------CCTTCCTCCCTGGATGTCACCACTCCCTGTCTTGTATTATTGCAGATAATGCAAATTTGGGGAATTTGAAAT---AAAAGA--CCATTTCAGCATCATCCTC----ACATTCATGGATTCAGGGTTAGGAT-----GGAAATG-----GCTCCTTTTGGTTTGGGGAATATAA----CCACTGAAACACCTATGTCCTGTAGACTC----AGCCTTTAGTATATACCTCC--TTTGTAGTTTTGTATC------------ACTGA-----CAGACAAATGATAAGTCCTTGTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 673983 626 - 6883506 GAGTTATACT----AATAAACAATGTTTTGTTCAA-TAACCA-CTTTTTCTAGTGACCTGTGTTCTACCTAACGTAAAGCAGCATTTTATCAAGGAA-AGATGCCTGAACTTAATTCCAGAAGAT---ACTGGTGCAAATCTGAACTCTTCTTACTTGCAATTATGTGTAACCACA----AATAGATCTCATCA-TAATTCAAGGCCTTAAACTTCTGCTACAATAAATATGTTGGCATTGAAT-------------------------------CATCTATAAGTCTGTGAAGATCAAA-GTGCCTCCT-CTTGAAGAATTAACCATCAGCATCTGCG-----TACTTAATATACAAATTTGT---GAAAATAGTTATTTGTGACACACTAGTGACTAATATTTAGGGTCCATTTACTCCCAGGGTTTCTACCCTACCTGTCTTGTATTATTGTAGACAATGTAA---------ATTTGAAATTGTAGAAAG--ACATATCAGCATCATTCATTCCCAGATTCACAGATTCAGGGTTAGAAT-----GGGATGGAAGGTGTTCCTTTTGGTTTGTGCAATATTATAA-CCTCAAGAACCCTCTGTCCTGAAATGCCCATTTGTTTTTTGAAATACACCTAC--TTCATGTTAAAATATCATA---GGAGT-CCTGATTTCCTAACAAGATGCTAAGTCTTTAAA i dasNov3.JH568778 C 0 I 6258 a score=4119428.000000 s hg38.chr21_GL383578v2_alt 59581 363 + 63917 GGTCTG-GGGTCATGC--TTTTGGGC---------TCCAAAT--ATCTCTAGCACCTAGTATG-TAACAGCTAG-CCCACAGCTAATCAC---TTAATAAGTTGTACACCATGA--TTTTTT----TTTCTA-AGAAAAACCTTATGGAAGAATAGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATTAACAGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTATTTTTAATTGACAATTCCTCTTATAC--------ATCATATAGTATATAGCTAAGTATTT-CTACTTCACAAATAGCTTA----CCTAGTAC--ATAATTT----TATG---CTAAGTAT s panTro5.chr21 897075 363 + 33445071 ggtctg-gggtcatgc--ttttgggc---------tccaaat--atctctagcacctagtatg-taacagctag-cccatagctaatcac---ttaataagtTGTACACCATGA--TTTTTT----TTTCTA-AGAAAAACCTTATGGAAGAATAGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACAGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTATTTTTAATTGACAATTCCTCTTATAC--------ATCATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTA----CCTAGTAC--ATAATTT----TATG---CTAAGTAT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14581707 362 + 46275980 ggtctg-gggtcatgc--ttttgggc---------tccaaat--atctctagcacctagtatg-taacagctag-cccatagctaatcac---ttaataagtTGTACGCCATGA---TTTTT----TTTCTA-AGAAAAACCTTATGGAAGAATAGTAC------------TACAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACAGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTATTTTTAATTGACAATTCCTCTTATAC--------ATCATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTA----CCTAGTAC--ATAATTT----TATG---CTAAGTAT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 493843 364 - 13858734 ggtctg-gggtcatgc--ttttgggc---------tccaaat--atctctagcacctagtgtg-taacagctag-ccctcagctaatcac---ttaataagtTATACACCATGA-TTTTTTT----TTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACAGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTATTTTTAATTGACAATTCCTCTTATAC--------ATCATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTA----CCTAGTAC--CTAATTT----TATG---CTAAGTAT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1622161 363 + 32716333 GGTCCG-GGGTCATGC--TTTTGGGC---------TCCAAAT--ATCTCTAGCACCTAGTACG-TAACAGCTAG-CCCACAGCTAATCAC---TTAATAAGTTGTACGCCATGA--TTTTTT----TTCCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TGAAGATTTCCTTTTAATCGCTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTATACTGCAATCAACTGAAATCCAATTTGGTGTAATTAGT-GTCAATTTATTTTTAATTGACAATTCCTCTTATAA--------ATCATATAGTATATAGCTAACTAGTT-CTACTTCACAAATAGCTTA----CCTAGTAT--ATAATTT----TATA---CTAAGTAT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152686780 372 - 185818997 GGTCCG-GGGTCGTGC--TTTTGGGC---------TCCAAAT--ATCTCTGGCACCTACTATG-TAACAGCTAGCCCCACAGCTAATCAC---TTAATAAGTTGTACACCATGATTTTTTTT--TATTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACTGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTGCCTAGTAC--ATAATTT----TATA---CTAAATAT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159494856 372 - 192294377 GGTCCG-GGGTCGTGC--TTTTGGGC---------TCCAAAT--ATCTCTGGCACCTACTATG-TAACAGCTAGCCCCACAGCTAATCAC---TTAATAAGTTGTACACCATGATTTTTTTT--TATTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACTGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTGCCTAGTAC--ATAATTT----TATA---CTAAATAT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5939704 372 + 9440265 GGTCCG-GGGTCGTGC--TTTTGGGC---------TCCAAAT--ATCTCTGGCACCTACTATG-TAACAGCTAGCCCCACAGCTAATCAC---TTAATAAGTTGTACACCATGATTTTTTTT--TATTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACTGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTGCCTAGTAC--ATAATTT----TATA---CTAAATAT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5683965 370 + 21915920 GGTCCG-GGGTCGTGC--TTTTGGGC---------TCCAAAT--ATCTCTGGCACCTAGTATG-TAACAGCTAGCCCCACAGCTAATCAC---TTAATAAGTTGTACACCATGATTTTTTTT----TTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACTGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTGCCTAGTAC--ATAATTT----TATA---CTAAATAT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12320659 370 - 90373283 GGTCCG-GGGTCGTGC--TTTTGGGC---------TCCAAAT--ATCTCTGGCACCTAGTATG-TAACAGCTAGCCCCATAGCTAATCAC---TCAATAAGTTGTACACCATGA--TTTTTT--TTTTCCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAGCTGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTGCCTAGTAC--ATAATTT----TACA---CTAAATAT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 662767 372 + 1337817 GGTCCG-GGGTCGTGC--TTTTGGGC---------TCCAAAT--ATCTCTGGCACCTAGTATG-TTACAGCTAGCCCCACAGCTAATCAC---CTAATAAGTTGTACACCATGATTTTTTTT--TTTTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCTTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTACTGTAATCAACTGAAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGATAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTGCCTAGTAC--ATAATTT----TATA---CTAAATAC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 632011 370 - 3237654 GATCCG-GAGTCGTGC--TTTTGGAC---------TCCAAAT--ATCTCTGGCACCTAGTATG-TAACAGCTAGCCCCACAGCTAATCAC---TTAATAAGTTGTACACCATGATTTTTTTT----TTTCTA-AGAAAAACCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTCCACAACATCCAATGAAAACAGAATGTATAAATGAATCATTTGGTGTGCTATAATCAACTGGAGTCCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTATAA--------ATAATATAGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTACCTACCTAGTAC--ATAATTT----TATA---CTAAATAT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19170672 296 + 50472720 GGTCTG-GGATCATGC--TTTTGGGC---------TCTAAAT--ATCTCTAA-------------------------------------------------------------------------------A-AAAATAAGCTTATGGAACAATTGTAC------------CAAAGATTTCCTTTTAATCACTGAAATGCAAACAATTTTTCACAACACTCAATGAAAAGAGAATGTGTAAATGAATC-TTTGGTGTACTGTAGTAAACTGAAGTTCAATTTGGTATAATTAGT-GTTAATTAGTTTTTAATTGACAATTCCTCTTAAAA--------ATCATATGGTATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTA----CCTAGTAT--ATAATTTTATGTATA---CTAGGT-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2510389 297 + 13128814 GGTCTG-GGATCATGT--TTTGGGGC---------TCTAAAT--ATCTCTAA-------------------------------------------------------------------------------A-AAAATAAGCTTATGAAAAAATTGTAC------------CAAAGATTTCCTTTTAATCACTGAAATGCAAACCATTTTTCAAAACACCCAATAAAAACAGAATGTATAAATGAATCATTTGTTGTACTGTAGTAAACTGAAGCTCAATTTGGTGTAATTAGT-GTCAATTTGTTTTGAATTGACAATTCCTCTTAAAA--------ATCACATGGTATATAGCGAAAAAGTT-CTACTTCACAAATAGTTTA----CCTAGTAT--ATAATTTTGTATATA---CTAGGT-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7048075 297 - 14377064 ggtctg-ggatcatgt--tttTGGGC---------TCTAAAT--ATCTCTAA-------------------------------------------------------------------------------A-AAAATAAGCTTATGGAAAAATTGTGC------------CAAAGATTTCCTTTTAATCACTGAAATGCAAACCATTTTTCACAACACCCAATGAAAACAGAATGTATAAATGAATCATTTGTTGTACTGTAGTAAACTGAAGCTCAATTTGATGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTAAAA--------ATCATATGGTATATAGCTAAGAAGTT-CTACTTCACAAGTAGCTTA----CCTAGTAT--ATAATTTTATCTATA---CTAGGT-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6095728 294 + 9889416 ggtctg-ggatcatgc--tttTGGGC---------TCTAAAT--ATCTCTAA-------------------------------------------------------------------------------A-AAAATAAGCTTATGGAAAAATTGTAC------------CAAA-ATTTCCTTTTAATCACTGAAATGCAAACAATTTTTCACAACACCCAATGAAAAC--AATGTATAAATGAATCATTTGTTGTACTGTAGTAAACTGAACTTCAATTTGGTGTAATTAGT-GTCAATTTGTTTTTAATTGACAATTCCTCTTAAAA--------ATCATATGGCATATAGCTAAGTAGTT-CTACTTCACAAATAGCTTA----CCTAGTAT--ATAATTTTATATATA---CTAGGT-- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16868965 355 + 47401472 GGTCTA-TGATCATAC--TTTTGCAC---------TCTAAAT--ATCTCTAGCACCTAGGATC-TAATAGCCAGCTTCACAACTACTCAC---TCAATAAGTTGTACACTATGA-----TTT-----------AAAAAAAGCTTATGGAAAAATTGTAC------------TAAAGATTTCCTTTTAATCAATGAAATGTAAACACTTTTCCACAAAACTCAGTGAAAAGGGAATGTATAAATGAATCATGTGGTCTGCTGTAGTAAACTAAAAACCACTTCAGTGTAATT-AT-GTCAATTTGCTTTTAATTGACAATTCCTCTCATAA--------ATCATATTGTATGCAGCTAAGTAGTTGCTACTTCACAAACAGCTTA----CCTAGTAT--ATAATTT----TGTA---CAAAGTAT i micMur3.chr31 C 0 I 81 s otoGar3.GL873528 18357912 353 - 38779656 GGTCTG-GGATCATAC--TTTTGTGC---------TCTAAATTCCTCTCTAGCATCTAGCATC-TAATACCCAGCTCCACGACTACTCAG---TAAATAAGTTGTACATGATGA-----TTT-----------AAACAAAAATTAT-GAAAAATTATGC------------TAAATATTTCCTTTTAATCACCCCAATGTAAACACTTTTCCACTAAACTCAAGGCAGAGGGAATGTAGAAATGAATTATGTGGTCTGTTGTAGTAAACTGAAAACCATTCTTGTATAATTAAT-GTCAAT----TTTTAATTGACATTTCCTCTGATAA--------ATCATATTGTGTACAGCTAAGTAGTGGCTACTTTACAAATAGCTTA----CCTGCTAG--ATAATTT----TACA---CCAAGCAC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75845907 342 + 98207768 GATATG-CAACCATTA--TTTTGTGAGCCTAAATGTCTAAAT--ATTCCCAGTTCCTAATGTT-GAACAGCTGGCCCTACAACCGATCAC---TGAGTAAATTGTATATCa-----attttaaaaatataaa-aatataaGCTTATAAAAAACCACTAA------------CAAGGG--------TAA-----AAGATATAAGCACTACTTAATAG-ATTCAATCAAAATGGAATG----AATAAAACACTGTGCCTACTGCAGT-AACCTAAACTTATTCATGAGTAACTATT-Gttaatttattttaaattggcaatt--ttcaaaaa--------aatatattttatataGCTAAGTA-TA-TGATCTCACAA------------CTTACTAT--AT--TTT----TACA---CTAAGTGT i mm10.chr16 C 0 C 0 s canFam3.chr31 11471893 384 + 39895921 GGTCTGAGAGTTCTAA--ATATCAGT---------TCTAAGT--ATCCCTAGCATCTACCACT-TAACATTTAGACCCAGAACTAAACAT---TTAATATGTTATTTGATGTGATTTTTTTG--TGTGTATATAGAAAATACTTACGGAAAAATTATATAGCG--------TAAAGATTTCCTTTTCATCACTGAAATGTAAATAATTTTCCATAAGACTCAATGAAAAAGGAATGTAGAAATGAACAATTTGTTCTATTGTGGGAAACTGAAATTCACTCTGGAGTGATTAGTGGTTATTTGGTTTTTAATTGACAATACCACTCATAAATCATATTATCATATTGTATACAAATAAGTAGTTGCTACTTCAAAAATAGCTTA----CATAGTGT--ATGGTTA----TATA---GTAGCTAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 680867 386 - 6883506 GGTTTG-GGGCCATATAATTTTTAGA---------TCTAA-T--ATCCCTGTTACCTAGTATTCTAACATTTGGATTCATAAACAATCACTTATTATTAGGCTGTGTATTAAG---TTATTA--GACTGGGG-AGAGAGAGTTTATGGAA-AATTGTACAGGATACAGAGCTAAAGGTTTCCTTTTAGTTTCTGAAATAT-GGCAGTTTCCCACAA-ACATCATAAAAAGAGAATGTAGAAATGAATCATTTTGCCTAGTGTAACAAACTGAAAACCATTCTGGTGTAATTGGTAGTTATTTGATGTTTAATTGTCAGTACCTCTCATAT--------ATCATATTGCATGCAGCTAAGTATTTGCTACTTCACAATACGTTTA----CCTAGTATAAATGAATT----TATATTGCTAAGTAT i dasNov3.JH568778 I 6258 C 0 a score=1133723.000000 s hg38.chr21_GL383578v2_alt 59944 131 + 63917 CTGTGTAGTCTTTCTCCTCTTAAAACAATACGATAAAAAAATAGAAAACACACAC----------------------------ACGCACAT-----------------------------ACAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCAT-GACTTTA s panTro5.chr21 897438 131 + 33445071 CTGTGTAGTCTTTCTCCTCTTAAAACAATATGATAAAAAAATAGAAAACACACAC----------------------------ACGCACAT-----------------------------ACAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCAT-GACTTTA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582069 131 + 46275980 CCGTGTAGTCTTTCTCCTCTTAAAACAATATGATAAAAAAATAGAAAACACACAC----------------------------ACGCACAT-----------------------------ACAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCAT-GACTTTA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 494207 131 - 13858734 CTGTGTAGTCTTTCTCTTCTTAAAACAATACAATAAAAAAATAGAAAACACACAC----------------------------ATGCACAT-----------------------------ACAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCAT-GACTTTA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1622524 159 + 32716333 CTGTGTAGTCTTCCTCCTCTTAAAACAATACAATAAAAAAATAGAAAacacacacacacacacacacacacacacacacagaaacacacaT-----------------------------ACAA-----CTGTAT----AGTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATAGCCTAGTCTCAC-GACTTTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687152 130 - 185818997 CTGTGTAGTCTTTCTCCTCTTAAAACAATACAATAAAAAAATAGAAAACACACAC----------------------------A--CACAT-----------------------------AGAA-----CTGTAT----ACTTTGAAAACCAGAATATTTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159495228 130 - 192294377 CTGTGTAGTCTTTCTCCTCTTAAAACAATACAATAAAAAAATAGAAAACACACAC----------------------------A--CACAG-----------------------------AGAA-----CTGTAT----ACTTTGAAAACCAGAATATTTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940076 130 + 9440265 CTGTGTAGTCTTTCTCCTCTTAAAACAATACAATAAAAAAATAGAAAACACACAC----------------------------A--CACAT-----------------------------AGAA-----CTGTAT----ACTTTGAAAACCAGAATATTTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5684335 129 + 21915920 CTGTGTAGTCTTTCTCCTCTTAAAACAATACAATAAAAAAA-AGAacacacacac----------------------------a--cacat-----------------------------acaA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12321029 130 - 90373283 CTGTGTAGTCTTTCTCCTCTTAAAACAATACAATAAAAAAATAGAAAACACACAC----------------------------A--CACAT-----------------------------ACAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 663139 129 + 1337817 CTGTGTAGTCTTTCTCCTCTTAAAACAATACAATAAAAAAA-AGAacacacacac----------------------------a--cacat-----------------------------acaA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 632381 128 - 3237654 ATGTGTGGTCTTTCTCCTCTTAAAACAATACAATAAAAAAATAGAAA--ACACAC----------------------------A--CACAT-----------------------------ACAA-----CTGTAT----ACTTTGAACACCAGCATATCTCAGTTTAGAAGGCAAATATCCCAGTCTCACAGACTTTA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19170968 159 + 50472720 CTTTGTGGTCTTTCTCCCTTTAAAACAATACAGTGAAAAAATAGAGcacacacac----------------------------a--cacacacacacacacacacacacacacacacacaATAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAAGCAAATATGCCAGTCTCACAGACTTTA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2510686 134 + 13128814 CTTTGTGGTCTTTCTCCCCTTAAAACAATACAGTGAAAAAATAGAGCGCGCACAC----------------------------A--CACACACAC-------------------------ATGA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAAGCAAATATGCCAGTCTCACAGCCTTTA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7048372 126 - 14377064 CTTTGTGGTCTTCCACTTCTTAAAACAATACAGTGAAAAAATAGAGTACACACAC----------------------------A--A---------------------------------ACAA-----CTGTAT----ACTTTGAAAACCAGAATATCTCAGTTTAGAAAGCAAATATGCCAGTCTCACAGCCTGTA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096022 145 + 9889416 -TTTGTGGTCTTTCTCCCCTTAAAACAATACAGTGAAAAAATAGAGcacacacac----------------------------a--catatacacacacacacacGA-------------ACAA-----CTGTAT----ACTTTGAAAACCAAAATATCTCAGTTTAGAAAGCAAATATGCCAGTctcacagccttta i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18358265 81 - 38779656 ---------------------AGAACAACACAATGAAAAAG-AAAAAGCAAACAG----------------------------A--CCAAA-----------------------------ACAAAAATGCCCTGT----GCATTGAAAAGCAGAATATCTCAG--------GCA------------------------ i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75846249 103 + 98207768 TTGCATGGTGCTTTTTCTTTTAAAATTATATAATTGGAAAATGAGA---ATGTAG----------------------------G------------------------------------AAAG-----TTGTGTCACGGCTTAGAGAGT---AAAATCTTGACTATGGCAACAGATA-------------------- i mm10.chr16 C 0 C 0 s canFam3.chr31 11472277 85 + 39895921 CTGTCTGGCTCCATATCT-------------------------------GCCCCC----------------------------A------------------------------------AAAA-----CTATAA----A--TTGAGGGCCAGAATGTCTCA----AGAGGGCAAATATCTCA---TTACAACATTTA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 681253 87 - 6883506 -TGGGCCGGGGTTTTCCCTTT--------------------------------------------------------------T------------------------------------AAAA-----CTATAA----A--TTAAGAAGCACAATATCTCACTTTAGAA-GCAAAAATCCCAATGTCACTGTCTTTA i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16869320 81 + 47401472 I a score=3873762.000000 s hg38.chr21_GL383578v2_alt 60075 308 + 63917 GGGATGTCTCCCTTCACTGGGCTCTTCAGCTATGATTTGGCTCTATTGGTTCGGTACTGTGATGCATA------------------------------------------------------------------TGTTGTGATGGGATTGGGTTGCTATCATAGTCTTTGATATTGGTACTGCTTCTTCAGCTAGATTGCAAATTCATTGACAGAAAAGACTATGTATTT-------------TATGTTTCTTTGTTCCAAGTGTCTAATAGAGTTTTATTTATTTAGAAAGTTCTCAATTAGTAGTTGCTGCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAATCTATTT s panTro5.chr21 897569 308 + 33445071 GGgatgtctcccttcactgggctcttcagctatgatttggctctattggttcggtactgtgatgcata------------------------------------------------------------------tgttgtgatgggattgggttgctatcatagtctttgatattggtactgcttcttcagctagattgcaaattcattgacagaaaagactatgtattt-------------tatgtttctttgttccaagtgtctaattgagttttatttatttagaaagttctcaattagtagttgctgCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAATCTATTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582200 308 + 46275980 GGgatgtctcccttcactgggctcttcagctatgatttggctctattggttcggtactgtgatgcata------------------------------------------------------------------tgttgtgatgggattgggttgctatcatagtctttgatattggtactgcttcttcagctagattgcaaattcattgacagaaaagactatgtattt-------------tatgtttctttgttccaagtgtctaattgagttttatttatttagaaagttctcaattagtagttgctgCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAATCTATTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 494338 304 - 13858734 GGgatgtctcccttcactgggctcttcagctatgatttggctctattggttcggtactgtgatgcata------------------------------------------------------------------tgttgtgatggcattgggttgctatcatagtctttgatattggtactgcttcttcagctagattgcaaatttattgacagaaaggactatgtattt-------------tatgtttctttgttccaagtgtctaatagagttttatttatttagaaagttctcaattagtagttgctgCAATCATGCAGGTAGGGCAATAGAC----TGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAATCTATTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1622683 304 + 32716333 GGGATGTCTCCCTTCACCGAGCTCTTCGGCTATGGTTTGGCTCTATTGGTTTGGCATTGTGATGCATA------------------------------------------------------------------TGTTGTGATGGGATTGGGTTGCTATCATAGTCTTTGATATTGGTACTTCTTCTTCAGCTAGATTGCAAATTTATTGACAGAAAAGACTACGTATTT-------------TATGTTTCTTTATTCCAAGTGTCTAATAGAGTTTTATTTATTTAGAAAGATCTCAA----TAGTTGCTCTAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687282 308 - 185818997 GGgatgtctcccttcactgagctcttcagctacgatttggctgtactggtttggcactgtgatgcata------------------------------------------------------------------tgttgtgttgggattgggttgctatcacagtattggatgttggtactgcctcttcagctagattgcaaatttattgacagaaaagactatgtattt-------------tatgttactttattccaagtgtctaatagagttttatttatttagaaagatctcaatttatagttgctgCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159495358 308 - 192294377 AGGATGTCTCCCTTCACTGAGCTCTTCAGCTACGATTTGGCTGTACTGGTTTGGCACTGTGATGCATA------------------------------------------------------------------TGTTGTGTTGGGATTGGGTTGCTATCACAGTATTGGATGTTGGTACTGCCTCTTCAGCTAGATTGCAAATTTATTGACAGAAAAGACTATGTATTT-------------TATGTTACTTTATTCCAAGTGTCTAATAGAGTTTTATTTATTTAGAAAGATCTCAATTTATAGTTGCTGCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940206 308 + 9440265 AGgatgtctcccttcactgagctcttcagctacgatttggctgtactggtttggcactgtgatgcata------------------------------------------------------------------tgttgtgttgggattgggttgctatcacagtattggatgttggtactgcctcttcagctagattgcaaatttattgacagaaaagactatgtattt-------------tatgttactttattccaagtgtctaatagagttttatttatttagaaagatctcaatttatagttgctgCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5684464 307 + 21915920 AGgatgtctcccttcactgagctcttcagctacgatttggctgtactggtttggcactgtgatgcata------------------------------------------------------------------tgttgtgttgggattgggttgctatcacagtattggatgttggta-tgcctcttcagctagattgcaaatttattgacagaaaagactatgtattt-------------tatgttactttattccaagtgtctaatagagttttatttatttagaaagatctcaatttatagttgctgCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12321159 308 - 90373283 AGGATGTCTCCCTTCACTGAGCTCTTCAGCTACGATTTGGCTGTACTGGTTTGGCACTGTGATGCATA------------------------------------------------------------------TGTTGTGTTGGGATTGGGTTGCTATCACAGTATTGGATGTTGGTACTGCCTCTTCAGCTAGATTGCAAATTTATTGACAGAAAAGACTATGTATTT-------------TATGTTACTTTATTCCAAGTGTCTAATAGAGTTTTATTTATTTAGAAAGATCTCAATTTATAGTTGCTGCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 663268 308 + 1337817 AGgatgtctcccttcactgagctcttcagctacgatttggctgtactggtttggcactgtgatgcata------------------------------------------------------------------tgttgtgttgggattgggttgctatcacagtattggatgttggtactgcctcttcagctagattgcaaatttattgacagaaaagactatgtattt-------------tatgttactttattccaagtgtctaatagagttttatttatttagaaagatctcaatttatagttgctgCAATCATGCAGGTAGGGCAATAGACACATTGCTCATTGAAAGCTCGCAATAAAATCAACAAATA-TAAGTCTATTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 632509 308 - 3237654 AGgatgtctcccttcactgagctcttcagctacgatttggctctgctggtttggcactgtgattcata------------------------------------------------------------------tgttgtgttgggattgggttgctatcacagtatttgatgttggtagtgcctcttcagctagattgcaaatttattgacagaaaagactgtgtattt-------------tatgtttctttattccaagtgtctaatagagttttatttatttagaaagatctcaatttatagttgctgCAATCATGCAGGTGGGGCAATAGACATATTGCTCATTGAAAGCTCGCAATAAAATCAACCAGTG-TTAGTCTATTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19171127 298 + 50472720 GGGACGTCTCCCTTCACTGAGCTCTTCAGCTGTGATTTTGCTCTAT-----------TGTGATGCATA------------------------------------------------------------------TGCTGTGATGGGATTGGTTTGCTATCATAGTCTTTGATATTGGTACTGCCTCTCCAGAGAGATTGCAAATTTATTGACATAAAAGACTATGCATTT-------------TATGTTTCTTTATTCCAGGTGTCTAATAGAGTTTTATTTATTTAGAAAGACCTCAATTAATAGTTGCTGTAATTATGCAGGTAGGTCAATGGACACATTACCCATTGAAAGCTCATAATAAAATCAACAAATGTTAAGTCAGTTT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2510820 298 + 13128814 GGGACGTCTCCCTTCACTGAGCTCTTCAGCTGTGGTTTTGCTCTAT-----------TGTGATGCATA------------------------------------------------------------------TGCTGTGATGGGACTGGTTTGCTATCATAGTCTTTGATATTGGTACTGCCTCTCCAGAGAGATTGCAAATTTTTTGACAGAAAAGACTATGTATTT-------------TATGTTTCTTTATTTCAAGTGTCTAACAGAGTTTTATTTATTTAGAAAGACCTCAATTAATAGTTGCTGTAATTATGCAGGTAGGGCAATAGACACATTACCCATTGAAAGCTCATAATAAAATCAACAAATGTTAGGTCAGTTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7048498 298 - 14377064 GGGACGTCTCCCTTCACTGAGCTCTTCAGCTGGGATTTTGCTCTAT-----------TGTGATGCATA------------------------------------------------------------------TGCTGTGATGGGATTGGTTTGCTATCATAGTCTTTGATATTGGTACtgcctctccagagcgattgcaaatttattgacagaaaagactatgtattt-------------tatgattctttatttcaagtgtctaacagagttttatttatttagaaagacatcaattaatagttgctATAATTATGCAGGTAGGGCAATAGACACATTACCCATTGAAAGCTCATAATAAAATAAACAAATGTTAAGTCAGTTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096167 294 + 9889416 gggacgtctcccttcactgagctcttcagctgtgattttgctctat-----------tgtgatgcata------------------------------------------------------------------tgctgtgatgggattggtttgctatcatagtctttgatattagtactgcctctccagagagattgcaaatttattaacagaaaagactatgtattt-------------tatgtttctttattccaagtgtctaatagagttttatttatttagaaagacctc----aataGTTGCTGTAATTATGCAGGTAGGGCAATAGACACATTACCCATTGAAAGCTCATAATAAAATCAGCAAATGTTAAGACAGTTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16869401 303 + 47401472 AGgatgccttccttctatgaactctatagctattattttgttctattggtttaacactgtgatgcata------------------------------------------------------------------ttttgtg-cagaattgtgttgctatcacagtctttgatatttgtcctgcttctccagctagattgcaaacttact----aaaaataccatgtatct-------------tatatgtctttattccaagtgcccaatagagttttatttatctgaaaaatgctcatttaatatttgctAGAATCATGCAGATAGACCAAGAGACACCTTGCCCATTGAAATCTCACAATGAAATCAACAAATG-TAAGTCTATTC i micMur3.chr31 I 81 C 0 s otoGar3.GL873528 18358346 293 - 38779656 -GGATGCTTTCCTTCTGTGAACTCAGTAGCCATTATTTTGTTCTACTGGTCTGACACTATGGTGCAGG------------------------------------------------------------------TTTTGTGACTGCATTATGTTGCTATTATAGTCTTTGATATATGTCCTGCTTCTCTAGCTAT-TTGAGA-----------GAAAAGACCATGCATTT-------------TATCTG--TTTATTCCAAGTGTCTAATAGAATTTCATTTATCTAGAAAGTATTCAATTAATATTTGCTAGACTCCTACAGGTAGGGCACCAGACACATTGGCCACTGAAAGCTCACAATAAAATCAACAAAGG-CAAATCTATTC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75846352 301 + 98207768 GTGCTGTCTGTCTCC-TTGGATTCCACATACTTTCCTTGGTT-TATCGATTTGCC--TATGCGGCACA------------------------------------------------------------------TCTTTGTTCATGATGGTGCTGTGATTAAAGGCATTTCTATTGTACTCACAGCTGTAACTAGGTTGGGAAACTTTTGCTGGCAATGACTATGTAACT-------------TATATTTCATTAGGCCAAGTGTCTAATGGAGTTTCCTCTACTGAGAAAGTGC-CAGTTGATATTTCCTGGAGTCATG--GGCAGGGCATCTGACACATTGCACCCTGAAAGCTCACAAGAAGATCTACAAGTA-TAAATGTGTTT i mm10.chr16 C 0 I 763 s canFam3.chr31 11472362 265 + 39895921 AGGATGTCTTTCCTCTTTGAACTCTACAGCTATTACTT--------------------------------------------------------------------------------------------------TTCTTACAGGAATGTGTTGCTAT----------GGtatttgtcctacctctttagctagattgcaaacttgttgagagaaaacaccatgtatct-------------tatgatcctgtattctaagtgtctAATGGAGTTTTACTTATCTAAAAAATATTCAATTAATATTTGCTGGAATCCTATAGGCAGGGCAAGACACACATTGC-CATTGTAAGTTCACAATAAAATCAACAAATA-TTAGTCTACTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 681340 340 - 6883506 GGAATTTCTTCCTTCTGTTAACTCTACAGCTATTACTTTGTTCTACTGATTTAGCACtat-atatataaaaacatatcttatttttattatcacttttaaaaaatttataaaGAAACTGTATGATGATGTTTCTTTTTGTTACAGTATTTTGTTATTATTACAGCCtttgttgtttattcaaactcatcagctagattgcaaactcactgagagaaaaggctgtgtgtgtgtgtgtatatatatatatagttttattttcagtgcctaatacagttttacttactttaaaagtgttcaattaatatttgctggaATCTTACAGGCAGAGCAATAGAT-----------------------------TCAA------------------ i dasNov3.JH568778 C 0 C 0 a score=970680.000000 s hg38.chr21_GL383578v2_alt 60383 90 + 63917 ATTAAGCTTCCTAATTTACAA-------ACAAAGCAGAAATAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTGTCTTATGT s panTro5.chr21 897877 90 + 33445071 ATTAAGCTTCCTAATTTACAA-------ACAAAGCAGAAATAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTCGTCTTATGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582508 90 + 46275980 ATTAAGCTTCCTAATTTACAA-------ACAAAGCAGAAATAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTGTCTTATGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 494642 90 - 13858734 ATTAAGCTTCCTAATTTACAA-------ACAAAGCAGAAATAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTGTCTTATGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1622987 90 + 32716333 ATTAAACTTCCTAATTTACAA-------ACAAAGCAGAAATAG--CTATTTTTA-T------ACTAATTACACTACTGTAAAT-TTTG-TATCCTGTTTGTCTTATGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687590 88 - 185818997 GTTAAACTTATTAATTTACAA---------AACACAGAAGTAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTTTCTTATGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159495666 88 - 192294377 GTTAAACTTATTAATTTACAA---------AACACAGAAGTAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTTTCTTATGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940514 88 + 9440265 GTTAAACTTATTAATTTACAA---------AACACAGAAGTAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTTTCTTATGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5684771 88 + 21915920 GTTAAACTTATTAATTTACAA---------AACACAGAAGTAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTTTCTTATGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12321467 88 - 90373283 GTTAAACTTATTCATTTACAA---------AACACAGAAGTAG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTTTCTTATGT i chlSab2.chr2 C 0 I 349 s manLeu1.NW_012107264v1 663576 88 + 1337817 GTTAAACTTATTAATTTACAA---------AACACAGAAGTAG--CTATTCTTA-T------ACTAATTAAACTACTGTAAAT-TTTG-TATCCTGTTTTTCTTATGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 632817 91 - 3237654 GTCATACTTACTAATTTACAA----A--ACAACACAGAAATGG--CTATTTTTA-T------ACTAATTAAACTACTGTAAAT-TTTT-TATCCTGTTTTTCTTATGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19171425 95 + 50472720 ATTAAACTTCCTAATTGACAAAACAA--ATAATGGAGAAATAG--CTATCTTTA-T------GCTAATTAAACAACTGTAAAT-TTTG-TATCCTGTATCTCTTATGT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511118 95 + 13128814 ATTAAACTTCCTAACTGACAAAACAA--ACAATGGAGAAATAG--CTATCTTTA-T------GCTAATTAAACAACTGTAAAT-TTTG-TATCTTGTTTCTCTGCTGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7048796 95 - 14377064 ATTAAACTTCCTGATTGACAAAGCAA--ACAATGGAGAAATAG--CTATCTTTA-T------GCTAATTAAACAACCGTAAAT-TTTG-TATCCTGTTTCTCTTCTGT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096461 95 + 9889416 ATTAAACTTCCTAATTGACAAAACAA--ACAATGGAGAAATAA--CTATCTTTA-T------GCTAATTAAACAACTGTAAAT-TTTG-TATCCTGTTTCTCTTATGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16869704 93 + 47401472 ATTAAACTTCCTAATTCATGAAACAACCTTAATGCAGAAATAG--GTATTTTTTAT------ACTAA----ACTACTCTAA-A-TTTT-TATCCTATTTCCCTTATAT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18358639 93 - 38779656 ATTAAGTTCCCTAATTCAGGACACAACCTTAATGCAGAAATAA--CTATTTTTC-T------ACCAA----ATTACTCTAATT-TTTT-TATCCTGTTTCTCTTGTAT i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11472627 104 + 39895921 ATTTAAATTCCTAATTCATGAAACAACCTTCATGCAGAAATAC--CTATTTTTT-TTAATTAAAGAATTTAACTAGTCTAAAT-TTTGTTATTCTGTTTCCTCTATGT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 681680 79 - 6883506 ATTAAACTT---------------------AATGCAAAAATAGTTTTCTTTTTT-T------ACCAATTAAGCTAATATAAATATTTT-TATTCTGTTTTCCTTTTGT i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75846653 763 + 98207768 I a score=14136.000000 s hg38.chr21_GL383578v2_alt 60473 2 + 63917 GA s panTro5.chr21 897967 2 + 33445071 GA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582598 2 + 46275980 GA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 494732 2 - 13858734 GA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623077 2 + 32716333 GA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687678 2 - 185818997 GA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159495754 2 - 192294377 GA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940602 2 + 9440265 GA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5684859 2 + 21915920 GA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12321904 2 - 90373283 GA i chlSab2.chr2 I 349 C 0 s manLeu1.NW_012107264v1 663664 2 + 1337817 GA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 632908 2 - 3237654 GA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19171520 2 + 50472720 GG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511213 2 + 13128814 GG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7048891 2 - 14377064 GG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096556 2 + 9889416 GG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16869797 2 + 47401472 CA i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18358732 2 - 38779656 CA i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11472731 2 + 39895921 CA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 681759 2 - 6883506 CA i dasNov3.JH568778 C 0 C 0 e mm10.chr16 75846653 763 + 98207768 I a score=2329077.000000 s hg38.chr21_GL383578v2_alt 60475 188 + 63917 AGAGGTATA-TTTTGATCTTTTAGGTGTTGCCATAGAG-TTTAATCTGAAATCT----TACGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTAATTCAGCTAAAATAACAAATGTATTAGATAATTAC-AT--TTCT-CTATATCAACACTGCTGCACACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAAG- s panTro5.chr21 897969 188 + 33445071 AGAGGTATA-TTTTGATCTTTTAGGTGTTGCCATAGAG-TTTAATCTGAAATCT----TATGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTAATTCAGCTAAAATAACAAATGTATTAGATAATTAC-AT--TTTT-CTATATCAACACTGCTGCACACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAAG- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582600 188 + 46275980 AGAGGTATA-TTTTGATCTTTTAGGTGTTGCCATAGAG-TTTAATCTGAAATCT----TACGT------GGCATAGGATATTTCAAGAATTAAAATGCTTTTAATTCAGCTAAAATAACAAATGTATTAGATAATTAC-AT--TTTT-CTATATCAACACTGCTGCACACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAAG- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 494734 188 - 13858734 AGAGGTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGAAATCT----TACGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTAATTCAGCTAAAATAACAAATGTATTAGATAATTAA-AT--GTTT-CTATATCAACACTGCCGCACACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAAG- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623079 187 + 32716333 AAAGGTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGAGATCT----TACGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTAATTCAGCCAAAATAACAAATGTATTAGATAATTAA-AT--TTTT-CTATATCAACACTGCTGCACACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAA-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687680 187 - 185818997 AAATGTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGGGATCT----TATGT------GGCATAGGATATTTTAAGAGTTAAAATGCTTTTGATTCAGCTAAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTATATCAACACTGCTGCAAACATTAAAATGCGAGGTAGTTTTGAAATTACT-------------------------------------------------------------------------GAA-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159495756 187 - 192294377 AAATGTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGGGATCT----TATGT------GGCATAGGATATTTTAAGAGTTAAAATGCTTTTGATTCAGCCAAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTATATCAACACTGCTGCAAACATTAAAATGCGAGGTAGTTTTGAAATTACT-------------------------------------------------------------------------GAA-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940604 187 + 9440265 AAATGTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGGGATCT----TATGT------GGCATAGGATATTTTAAGAGTTAAAATGCTTTTGATTCAGCTAAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTATATCAACACTGCTGCAAACATTAAAATGCGAGGTAGTTTTGAAATTACT-------------------------------------------------------------------------GAA-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5684861 187 + 21915920 AAAGGTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGGGATCT----TCTGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTGATTCAGCTGAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTGTATCAACACTGCTGCAAACATTAAAATGCGAGGTAGTTTTGAAATTACT-------------------------------------------------------------------------GAA-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12321906 187 - 90373283 AAAGGTATA-TTTTTATCTTTTAGATGTTGCCGTAGAG-TTTAATCTGGGATCT----TCTGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTGATTCAGCTAAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTATATCAACACTGCTGCAAACATTAAAATGCGAGGTAGTTTTGAAATTACT-------------------------------------------------------------------------GAA-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 663666 187 + 1337817 AAAGGTATA-TTTTGATCTTTTAGAGGTTGCCATAGAG-TTTAATCTGGGATCT----TATGT------GACATAGGGTATTTCAAGAGTTAAAATGCTTTTGATTCAGCTAAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTATATCAACACTGCTGCAAACACTAAAATGCGAGGTAGTTTTGAAATTACT-------------------------------------------------------------------------GAA-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 632910 187 - 3237654 AAAGCTATA-TTTTGATCTTTTAGATGTTGCCATAGAG-TTTAATCTGGGATCT----TATGT------GGCATAGGATATTTCAAGAGTTAAAATGCTTTTAATTCAGCTAAAATAACAAATGCATTAGATAATTAA-AT--TTTT-CTATATCAACACTGGTGCAAACATTAAAATGCGAGGTAGCTTTGAAATTACT-------------------------------------------------------------------------GAA-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19171522 187 + 50472720 AAAGATATA-TTTTGATCTTTTAGATATTGCTATAGAG-TTTAATCTGGGATCT----TATGT------AGTGTAGGATATTTGAAGATTCAAAATGCTTTTAATTCAGttaaaat---aaatttattagataattaa-attatttt-CTATATCAACACTGCTGTATACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAAA- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511215 190 + 13128814 AAGGATATA-TTTTGATCTTTTAGATATTGCCGTAGAG-TTTAATCTGGGATCT----TATGT------GATGTAGGATATTTCAAGATTCAAAATGCTTTTAATTCAGCtaaaataacaaatttattagataattaa-attatttt-CTATATCAACACTGCTGTATACATTAAAATGGGAGGCAGCTTTGAAATTATT-------------------------------------------------------------------------GAAA- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7048893 190 - 14377064 AAGGATATA-TTTTGATCTTTTAGATATTGCCATAGAG-TTTAATCTGAGATCT----TATGT------GGTGTAGGATATTTCAAGATTCAAAATGCTTTTAATTCAGCTAAAATAACAAATTTATTAGATAATTAA-ATTATTTT-CTGTATCAACACTGCTGTATACATTAAAATGGGAGGCGGCTTTGAAATTATT-------------------------------------------------------------------------GAAG- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096558 180 + 9889416 AAGGATATA-TTTTGATCTTTTAGATATTGCCATAGTG-TTTAATCTGAGATCT----TATGT------AGTGTAGGATATTTCAAGATTCAAAATGCTTTTAATTCAGCTAAAATAACAAATTTATTAGATAATTAA-ATTATTTT-CTATATCAACA---CTGTATACATTAAAATG-------GCGTTGAAATTATT-------------------------------------------------------------------------GAAA- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16869799 184 + 47401472 AAAGATATG-TTTTTGTCTTTTAGATATGGCCAGAAAA-TTTAATCTGGGATCT----TA---------GGTGTAGGATATTTCAAGA-TTAAAATGCCTTTAATTCATCTATGATAATACATTTTTTAGATAACTGA-TT--TTTTTCTATATCAACACTGTAGTACACATTAAAATATGAGATAGTATTGAAATTATT-------------------------------------------------------------------------GAA-- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18358734 178 - 38779656 AGAGGCATATTTTTTGTCTTTTGCCTATTGCCAGAAAGTTTTAATCTGCGATCTGACATA---------GGTATAGGATATTTCAAGA-TTAAAATGCCTTTAATTCACCTAAAATAACACATTTTTTAGATAACTGG-TT--TTTT------------CTGCAGTATACATAAAAATAGGAGGTAGTTTTGAAATTATT-------------------------------------------------------------------------GAA-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75847416 159 + 98207768 AAATATACA-TTTTGTTC-TTTAGCCATTTTCACAGAG-TTTAATCTCAGATCT----TATGT------AGGTAAGTA--------------------CCCTAACTTGCCTAAAATAACAAACGTATTAAATAAATTA-GT--TGGT--------GAAATGGCAGTGTGCATTGAAGCATAAGACATATTTGAGCTCACT-------------------------------------------------------------------------CGG-- i mm10.chr16 I 763 C 0 s canFam3.chr31 11472733 257 + 39895921 AAAGATATG-TTTAGGTCTCTTAGATA---CCATAGTG-TTTAGTCTGGGATCT----TTTGT-----AGGCATTGGGTATTTCAAAATTTAAAATGCCTTTAATTAATCTAAAATAATG-ATTTATTGGGTAACTGATAT--TTTT-CTTTATCAACG-TGCAGTACACATTAAAATTTGAGACAACTTTCTAATTATTATTAttatttttttttaatttacgatagtcacagagagagagagagagagaggcagagacacaggcagagggagaa-- i canFam3.chr31 C 0 I 123 s dasNov3.JH568778 681761 188 - 6883506 AAATATATA-TTTAGGCCTTTTAGATATTGTCATAGAG-TTTCATTGGAACTCT----TAATTTATGCAGGCATATGATATTTCAAGATTTAAAATGCCTTTAATTCATCTAAAATAATAAAACTGTTGGAAAATGGA-AT--TTTT-TTCCTTTAGCA-----ACACACAGTAAAATGTGAGACAGCTTTT-AATTATT-------------------------------------------------------------------------GGA-A i dasNov3.JH568778 C 0 C 0 a score=1651647.000000 s hg38.chr21_GL383578v2_alt 60663 126 + 63917 AAAAGA---TAGATTTTTATT-ATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTACATCTTTCACTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG s panTro5.chr21 898157 126 + 33445071 AAAAGA---TAGATTTTTATT-ATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTACAACTTTCACTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582788 126 + 46275980 AAAAGA---TAGATTTTTATT-ATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTACAACTTTCACTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 494922 126 - 13858734 AAAAGA---CAGATTTTTATT-ATAGTAATTTATATGATGTCTAACTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATTATCCTTAAA-TTACATCTTTCACTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623266 128 + 32716333 AAAAGA---CAGATTTTTATTAATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTTCACTTATA-TTTGAAGAATTTTTGGCTTTTT-TTCAGAGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687867 124 - 185818997 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTT---TTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159495943 127 - 192294377 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTTCCCTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940791 127 + 9440265 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTTCCCTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5685048 126 + 21915920 AAAAGA---TAGATTTTTATTAATAGTAATTTATGTGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTC-CCTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12322093 127 - 90373283 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTTCCCTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 663853 127 + 1337817 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATGTCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTTCCCTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 633097 127 - 3237654 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATGTCTAATGCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATAATCCTTAAA-TTATATCTTTCCCTTATA-TTTGAAGAATTTTTGGC-TTTT-TTCAGAGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19171709 122 + 50472720 AAA-------AGATTTTTATTAATAGTAATTTATATGATATCTAATTCATGTCTCA-----------------------------------------------------------------------------------------------------AAATACAC-----------------------------------------------------ATACAAATAATCCTTAAA-TTATATCTCTCATTCATA-TTTGAAGAATTTTAGCA-TTTT-TTCAGAGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511405 127 + 13128814 AAAAGA---TAGATTTTTATTAATAGTAATTTATGTGGTATCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATACAC-----------------------------------------------------ATACAAATAATCCTTAAA-TTATATCTTTCATTCATA-TTTGAAGAACTTTGGCT-TTTT-TTCAGAGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7049083 127 - 14377064 AAAAGA---TAGATTTTTATTAATAGTAATTTATATGATATCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATACAC-----------------------------------------------------ATACAAATAATCCTTAAA-TTATGTCTTTCATTCATA-TTTGAAGAATTTTGGCT-TTTT-TTCAGAGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096738 120 + 9889416 AAA-------AGATTTTTATTAATAGTAATTTATATGATATCTAATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATACAC-----------------------------------------------------ATACA---AATCCTTAAA-TTGTATCTTTCATTCATA-TTTGAAGAATTTTGGCA-TTTT-TTCAGAGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16869983 132 + 47401472 AAAAGATGGTAGATTTTTGTTAATAGCAATTTATGTAATATCTGATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATGCAC-----------------------------------------------------TTATAAATTATCCTTAAATTTATATCCTTCACTTATG-TTTGAAGAATTTGGGGG-TTTTGTTCAGAAG i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18358912 129 - 38779656 AAAAGA---TAAAGCTTTGTTAATAGCAATTTATTTGATATCTGATTCATGTCTCA----------------------------------------------------------------------------------------------------GAAATACAC-----------------------------------------------------TTATAAATAATAGTTACATTTATATCCTTCACTTAGG-TTTAGAGAATTTGGGGA-CTTGGTTGAGAAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75847575 281 + 98207768 AAAAGG---TAGAATTTTATTAATAGTAATGTTCATGTGTTCTGAATTATATCTCAAACATTTATTATAAATTCTTCCttttttgagacagggtttctctgtgtagccctggctgtcttggaactcactctgtagaccaggctggcctcgaactcagaaatccacctccctctgcctcccaagtgctgggattaaaggcatgcaccaccactgctcagctATAAATTATTCTTAAATTTATATC-TTCAATCAAG-TTCAAAGAATTTGGAGT-CTTTGTTCAGAAG i mm10.chr16 C 0 C 0 s canFam3.chr31 11473113 128 + 39895921 AAAAAA---TAA--TTTTGTTAATAGAAATTTATGCGATGTCTGATTCATATCTCA----------------------------------------------------------------------------------------------------GGAATGCAC-----------------------------------------------------TTGTAAAGAATCCTTAAATTTACATATTTTGCCTAGATTTTGAAGAATTTTGGGG-CTTTGTTCAGAGG i canFam3.chr31 I 123 C 0 s dasNov3.JH568778 681949 133 - 6883506 AAACCATAGTAGAGTTTTATTAACGGTAGTTTATGTGATATCTGATTCAAACCTCA----------------------------------------------------------------------------------------------------GAAATACAC-----------------------------------------------------TTATAAATAATCTTTAAACTTATATCCTTCACTTAGGTTTTGAAGAATTTTTGTG-CTTTGTTCAGGGG i dasNov3.JH568778 C 0 M 287 a score=4413350.000000 s hg38.chr21_GL383578v2_alt 60789 327 + 63917 AAAACTATCCTACACC-TCTTACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTATATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTGAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCC-TTGTGTGAATAAAATAGTTCAATATTTTATAAATATTTAATAAATTATTATTTCCTACAACTTATGAGTGTTTGGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGGGAAG-AGATGATGATAAATGCCTGACACTATGTGTC-----TTGAAAAAGACTAGG s panTro5.chr21 898283 327 + 33445071 AAAACTATCCTACACC-TCTTACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTATATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTGAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCC-TTGTGTGAATAAAATAGTTCAATATTTTATAAATATTTAATAAATTATTATTTCCTACAACTTATGAGTGTTTGGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGGGAAG-AGATGATGATAAATGCCTGACACTATGTGTC-----TTGAAAAAGACTAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14582914 327 + 46275980 AAAACTATCCTACACC-TCTTACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTATATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTGAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCC-TTGTGTGAATAAAATAGTTCAATATTTTATAAATATTTAATAAATTATTATTTCCTACAACTTATGAGTGTTTGGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGGGAAG-AGATGATGATAAATGCCTGACACTATGTGTC-----TTGAAAAAGACTAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 495048 327 - 13858734 AAAACTATCCTACACC-TCTTACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTATATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTGAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCC-TTGTGTGAATAAGATAGTTCAATATTTTATAAATATTTAATAAATTATTATTTCCTACAACTTATGAGTGTTTGGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGGGAAG-AGATGATGATAAATGCCTGACACTATGTGTC-----TTGAAAAAGACTAGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623394 328 + 32716333 AAAACTATCCTAGACCTTCTTACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTATATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCC-TTGTGTGAATAAGATAGTTCAATATTTTATAAATATTTAATAAATTATTATTTCCTACAACTTATGAGTGTTTGGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGGGAAG-AGATGATGATAAATGCCTGATACTATATGTC-----TTGAAAAAGACTAGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152687991 328 - 185818997 AAAACTATCCTAGACC-TCTTATAGCACAGTAAATAAAACATCTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTGTATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATTTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGTTCAATATTTTATAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCATTTGGACAATTG-AACCTATGTTTGGAATATAAGTATGTGTCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159496070 328 - 192294377 AAAACTATCCTAGACC-TCTTATAGCACAGTAAATAAAACATCTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTGTATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATTTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGTTCAATATTTTATAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCATTTGGACAATTG-AACCTATGTTTGGAATATAAGTATGTGTCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5940918 328 + 9440265 AAAACTATCCTAGACC-TCTTATAGCACAGTAAATAAAACATCTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTGTATAAATCAGAATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATTTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGTTCAATATTTTATAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCATTTGGACAATTG-AACCTATGTTTGGAATATAAGTATGTGTCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5685174 328 + 21915920 AAAACTATCCTAGACC-TCTTATAGCACAGTAAATAAAACATCTATAAAGGTAGGTAGTAAAAAAGAGACAGTCTAGAAAAATCTGTATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATTTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGTTCAATATTTTATAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCGTTTGGACAATTG-AACCTATGTTTGAAATATAAGTATGTGTCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12322220 328 - 90373283 AAAACTATCCTAGACC-TCTTATAGCACAGTAAATAAAACATCTATAAAAGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTGTATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATCTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGTTCAATATTTTACAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCATTTGGACAATTG-AACCTATGTTTGGAATATAAGTATGTGCCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 663980 328 + 1337817 AAAACTATCCTAGACC-TCTTATAGCACAGTAAATAAAACATCTATAAAGGTAGGTAGTAAAAAAGGGACAGTCTAGAAAAATCTGTATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCAGGATGAG-AA-GTAATTTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGTTCAATATTTTATAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCATTTGGACAATTG-AACCTATGTTTGGAATATAAGTATGTGTCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 633224 328 - 3237654 AAAACTATCATAGACC-TCTTATAGCACAGTAAATAAAACATTTATAAAAGTAAGTAGTAAAAAAGGGACAGTCTAGAAAAATCTATATAAATCAGGATCCTGAGAGTTCTTTTTAAGATTCCGGATGAG-AA-GTAATTTTTCAA---ATTAAAGTCCCTTTGTGTGAATATGATAGCTCAATATTTTGTAAATATTGAATAAATTATTATTTCCTACAACTTATGAGCATTTGGACAATTG-AAGCTATGTTTGGAATATGAGTATGTGTCTGTCTATGTGGGGAAG-AGATGATGATCAATGCCTGACACTGTGTGTC-----TTGAAAAAGACTAGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19171831 328 + 50472720 TAAACTACCCTAGACC-TCTAACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTATAAAAAGGACAGTCTAGAAAAATCTATATAAATCAGAATCCTAAGAGTTCTTTTTAATATTCAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCCTTGGTGTGAATATGATAGTTCaatattttataaataattaataaagtattatttCCTACAACTTATGAGTGTTTTGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGAGAAT-AGATGATGCTAAATGCCTGACACTGTGTGCC-----TTGAAAAAGACTAGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511532 325 + 13128814 AAAACTATCCTAGACC-TCTAACAGCACAGTAAATAAAACATTTATAAAGGTAGGTAGTATAAAAAGGACAGTCTAGAAAAATGTATATAAATCAGAAGCCTGAGAGTTCTTTTTAATATTCAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCCATGGTGTGAATATGATAGTTCaatattttataaataattaataa---attatttCCTACAACTTATGAGTGTTTTGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTCTATGTGGAGAAT-AGATGATGATAAATGCCTGACACTGTGTGCC-----TTGAAAAAGACTAGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7049210 325 - 14377064 AAAACTATCCTAGACC-TCTAACAGCACAGTAAATAAAACATTTCTAAAGGTAGGTAGTATAAAAAAGACAGTCCAGAAAAATCTATATAAATCAGAATCCTGAGAGTTCTTTTTAATATTCAGGATGAG-AA-GTAATTTTTCTC---ATTAAAGTCCATTGGTGTGAATATGATAGTTCAATATTGTATAAATAATTAATAA---ATTATTTCCTATAACTTATGAGTGTTTTGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTATATGTGGAGAAT-AAATGATGATAAATGCCTGACACTGTGTGCC-----TTGAAAAAGACTAGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6096858 331 + 9889416 AAAACTATCCTAGACC-TCTATCAGCACAGTAAATAAAACATTTATAATGGTAGGTAGTATAACAAGGACAGTCTAGAAAAATCTATATAAATCAAAATCCCAAGAGTTCTTTTTAATATTCAGGATGAG-AA-GTAATTTTTCTCTAAATTAAAGTCCCTTGGTATGAATATGATAGTTCACTATTTTATAAATAATTAATAAATTATTATTTCCTACAACTTATGAGTGTTTCGACAATTG-AAGCTATGTTTGGAATATGAGTATATGTCTGTTTATGTGGAGAAT-AGATGGTGATAAATGACTGACATTGTGTGCC-----TTGAAAAAGACTAGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16870115 328 + 47401472 AAAACTATCCTACAAC-TCTTAAAGCATAATACATAAAACATTTATAAAGGTAGGTAGTATAAAAGGTACACTCTAGAAAAATCTATACAAATCAGCATCCCTAGAGTCCTTTTTAAGATTCAAGATGAGAAA-GTAATTTCTCTC---ATTAAACTCCCTTGGTGTGAATATGATAGTTCAATATTTCATAAATATTTAATGAATTATTATTTCCTATGACTTATGAGTGTTTGGATAATTG-CAGCTTTGTTTGGAATATGAGTATATATCTGGCTGTGTGGGGAAT-GGGTGATAA-AAATGCCTAATACTGTATGTC-----TTGAAAATGTCTGGG i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18359041 320 - 38779656 GAAACGATCCTACAAC-TCTTAAAGCATAATAAATGAAACATTTATAA----AGAGAGTATAAAAGGTACACTTGAGAAAAATCTAT--AAATCAGCATCCCTAGAGTCCTTTTTAAAATTTAAGATGAGAAA-GTAATTTCTCTC---ATTAAGCTCCCTTGGTGTGAATATGATCACTCaatatattataaatatttaatga---attatttCCTATAACTTAGGAGTGTTTGGACAACTG-AAGCTTTGTTTGGAATATAAGTACATGTCTGTCTGTGTGAGGAAT-GAGTGATAATAAATGCCTTACACTGCGTGTC-----TTGAAAATATCTGGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75847856 314 + 98207768 AAAACTACTCTAGCCC-TCTTAAAGCATAATAAATAAA-----------GGTACAGAGCCTA--AGGACCCCCCCCAGGAAATCTACATAAATCCAGGTACCCTTATTAATATTTAACATTCAAAATATGGAA-GCAATTTCTCTC---ATTAAAATTCCTTGGTGTAAAAGTGATGGTTCAGTATTTCATAAATGTTTAATGAGTTGTTATTTCTTACAACTTAGAAG----TGGACAATCG-TAACATTG--TAATAGATGTATACATGTCTG-CTATGCAGAAAAA-TGGACTGCAGCGGTGCCTATCCCTGAGAATCGACCTTAGAAAAACTCAGGG i mm10.chr16 C 0 C 0 s canFam3.chr31 11473241 316 + 39895921 AAAACTATGCTAGACT-TCTTAAAGAATAGTAAATAAAACATTTATAA---------------AAAGGACACACTAGGAAAATCTATATAACTTAGAGTCCCTAGAGTCCTTTTTAAGATTCAGGATAAT-AATGTAATTTCTCTC---ATTAAACTCCCTTGGTGTGAATATGATAGTTCAATATTTCATAAATATTTAATGAATTATTATTTCCTACAACTTATGAGTGTTTGGGCAATTGAAAGAGTTGTTTGAAATATGAGTATATGTCTGGCTGTGTGGAAAAGTGGGTGATTATAAATGATTTACACTGTGTGTC-----TTGAAAAAAATTGGG i canFam3.chr31 C 0 I 210 e dasNov3.JH568778 682082 287 - 6883506 M a score=27968.000000 s hg38.chr21_GL383578v2_alt 61116 3 + 63917 CAA s panTro5.chr21 898610 3 + 33445071 CAA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14583241 3 + 46275980 CAA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 495375 3 - 13858734 CAA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623722 3 + 32716333 CAA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152688319 3 - 185818997 CAA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159496398 3 - 192294377 CAA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5941246 3 + 9440265 CAA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5685502 3 + 21915920 CAA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12322548 3 - 90373283 CAA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 664308 3 + 1337817 CAA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 633552 3 - 3237654 CAA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19172159 3 + 50472720 CAA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511857 3 + 13128814 CAA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7049535 3 - 14377064 CAA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6097189 3 + 9889416 CAA i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16870443 2 + 47401472 C-A i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18359361 1 - 38779656 C-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75848170 3 + 98207768 CAA i mm10.chr16 C 0 C 0 s canFam3.chr31 11473767 3 + 39895921 AAA i canFam3.chr31 I 210 C 0 e dasNov3.JH568778 682082 287 - 6883506 M a score=1591561.000000 s hg38.chr21_GL383578v2_alt 61119 118 + 63917 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTGGGATTCTTTATGGTACAAATTTGAAAGTGCCTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTtaaaagtattaata--- s panTro5.chr21 898613 118 + 33445071 AAGAATTTCGAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTGGGATTCTTTATGGTACAAATTTGAAAGTGCCTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTtaaaagtattaata--- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14583244 118 + 46275980 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTGGGATTCTTTATGGTACAAATTTGAAAGTGCCTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTtaaaagtattaata--- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 495378 118 - 13858734 AAGAATTTCTCAGTTTTCCAGAAGGCAGAAAGGATG------------------------------CTTCGTGGGATTCTTTATGGTACAAATTTGAAAGTGCCTGATGGAAGTGCTTCTTGA----------TGCTTAAATCTtaaaagtattaata--- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623725 118 + 32716333 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTATTAGGATTCTTTATGGTACAAATTTGAAAGTGCCTGATGGAAGTGCTTCTTCG----------TGCTTAAATCTtaaaagtattaata--- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152688322 118 - 185818997 AAGAATTTCGAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTAGGATTCTTTATGGTACAAATTCGAAAGTGCGTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATCAATA--- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159496401 118 - 192294377 AAGAATTTCGAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTAGGATTCTTTATGGTACAAATTCGAAAGTGCGTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATCAATA--- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5941249 118 + 9440265 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTAGGATTCTTTATGGTACAAATTCGAAAGTGCGTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATCAATA--- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5685505 115 + 21915920 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGAATG------------------------------CTTAGTGGGATTCTTTATGGTACAAATTCGAAAGTGCGTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATC---A--- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12322551 118 - 90373283 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTAGGATTCTTTATGGTACGAATTCGAAAGTGCGTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATCAATA--- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 664311 118 + 1337817 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTGGGATTCTTTATGGTACAAATTCGAAAGTGCGTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATCAATA--- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 633555 118 - 3237654 AAGAATTTCTAAGTTTTACAGAAGGCAGAAAGGATG------------------------------CTTAGTAGGATTCTTTATGGTACAAATTCGAAAGCACCTGATGGAAGTGCTTCTTCA----------TGCTTAAATCTTAAAAGTATCaata--- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19172162 118 + 50472720 AATAATTTCTAAATTTTCCAGAAGGCAGAAATGATG------------------------------CTTAGTGGGATTCTTTATGGTACAAATTTGAAAGTGCCTGATGGAAGCACTTCTTCA----------TGCTTAAATCTGAATGGTATCAATA--- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511860 118 + 13128814 AATAATTTCTAAATTTTACAGAGGGCAGAAACAATG------------------------------TTTAGTGGGATTCTTCATGGTACAAATTTGAAAGTGCCTGTTGGAAGCACTTCTTCA----------TGCTTAAATCTGAATGGTATTAATA--- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7049538 113 - 14377064 AATAATTTCTAAATTTTACGGAAGGCAGAAACAATG------------------------------CTTAGTGGGATTCATTATGGTACAAATTTGAAAGTGCCTGATGGAAGCACTTCTTCA----------TGCTTAAATCTGAATGGTAT-------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6097192 113 + 9889416 AATAATTTCTAAGTTTTACAGAAGGCAGAAACGATG------------------------------CTTAGTGGGATTCTTTATGGCAAAAATTTGGAAGTGCCTGATGGAAGCACGTCTTCA----------TGCTTAAATCTGAATGGTAA-------- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16870445 115 + 47401472 AAAAATTTCTAAGTTTTAGAGAG--CAGGAAAGATG------------------------------TTTAGTGGGATTCTTTATGGTGTAAACTTGAAGGTG-CTGATGGAAGTGCTTCTGCA----------TTCTTAATTCTTAAAGGTATTAATA--- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18359362 118 - 38779656 AAAAATGTCTAACTTTTAGGGAGGCCAAGAAAGATG------------------------------TTTCGTGGGATTCTTTGCAGTGTAAATTTGAAAGTGCCTGATGGAAGTGCTTCTTCC----------TTCTTGATTCTTAAAGATATTGATA--- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75848173 117 + 98207768 TCGAATGCCTAAATGTTAGAGAGGAAAGAAA-GATG------------------------------TTAAGCAGGATTCTTTTGGGTATAGACTTAAAAGCATCTAATGGAAGGACCTCTTCG----------TTCTTCAGTTCTCTACGTATTGTTT--- i mm10.chr16 C 0 C 0 s canFam3.chr31 11473770 144 + 39895921 AATAATTTCTAAGTTTGAGAGAGGGCAGGAAGGATATTTGGTAAGGttcttttttttttttttttttttGGTAAGGTTCTTTATGGTATAAATTTGAAAATGCCTGA---GAGTGCTTCTTCA----------TTCTTAATTCTTAAA-GTATTATTA--- i canFam3.chr31 C 0 I 219 s dasNov3.JH568778 682369 131 - 6883506 AATAATTTCAACACTTTAGAGAGGGCAGGAACGATA------------------------------CTTGGTTGTATTTTTTATTGTATAAGTTTGAAAGTGCCCGATGGCAGTGCTTCTTCAAAGGTCCTATTCATTCAGTCATAATATTATTAGCAATA i dasNov3.JH568778 M 287 C 0 a score=9571859.000000 s hg38.chr21_GL383578v2_alt 61237 658 + 63917 ataat------------attata--------------tgatacaa-----ataatGAGCTGGGCAGAGGTAAAATCTTGCAGAAATCATACtaga-------tgctttacttgtttaagtttcc-----caacaacactgcaatgtggacattaacctcccctttacatttgaataa-actggatcttagatgcttaagaacctgaagcaaataagtgttg-aaactaagcatgatcccaaatccctcacacgccaaacttta-------cgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACGTTCCAATAACTGCCAGTCACATAGCGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAGAATAACACTTGCCATTATTCTGAGC-ACTCTGTGCATCTCCCCTCGTCCCTCCCAATAATACCTGGCCCTGAATTTCCTAAGATCAATGTTCCCAGATTATTAGACTCAGCCCAGATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGTTCTATAAGTACTACAGGCA-GACAGGTGACAA-TTTGTGAGATTTGAGGGT s panTro5.chr21 898731 658 + 33445071 ataat------------attata--------------tgatacca-----ataatGAGCTGGGCAGAGGTAAAATCTTGcagaaatcatgctaga-------tgctttacttgtttaagtttcc-----caacaacactgcaatgtggacattaacctcccctttacatttgaataa-actggatcttagatgcttaagaacctgAAGCAAATAAGTGTTG-AAACTAAGCATGATCCCAAATCCCTCACACGCCAAACTTTC-------CGT-TCTTGTATTGCATCATGTTGATTTCCTGTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACGTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAACAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAGAAGAACACTTGCCATTATTCTGAGC-ACTCTGTGCATCTCCCCTCGTCCCTCCCAATAATACCTGGCCCTGAATTTCCTAAGATCAATGTTCCCAGATTATTAGACTCAGCCCAGATTCCAGGG---TTTCCGTC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAATTCTATAAGTACTACAGGCA-GACAGGTGACAA-TTTGTGAGATTTGAGGGT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14583362 656 + 46275980 ataat------------attata--------------tgatacca-----ataatGAGCTGGGCAGAGGTAAAATCTTGcagaaatcatgctaga-------tgctttacttgtttaagtttcc-----caacaacactgcaatgtggacattaacctcccctttacatttgaataa-actggatcttagatgcttaagaacctgaagcaaataagtgttg-aaactaagcatgatcccaaatccctcacacgccaaacttta-------cgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACGTTCCAATAACTGCCAGTCACATAGTGATGATTATGCTTGATTAAACAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAGAAGAACACTTGCCATTATTCTGAGC-ACTCTGTGCATCTCCCCTCGTCCCTCCCAATAATACCTGGCCC-GAATTTCCTAAGATCAATGTTCCCAGATTATTAGACTCAGCCCAGATTCCAGGG---TTTCCGTC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAATTCTATAAGTA-TACAGGCA-GACAGGTGACAA-TTTGTGAGATTTGAGGGT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 495496 657 - 13858734 ataat------------attata--------------tgatacaa-----ataatGAGCTGGGCAGAGGTAAAATCTTGcagaaatcatgctaga-------tgctttacttgtttaagtttcc-----caacaacactacaatgtggacattaacctcccctttatagttgaataa-actggatcttagatgcttaagaacctgAAGT-AATAAGTGTTG-AAACTAAGCATGATCCCAAATCCCTCACACGCCAAACTTTA-------CTT-TCTTGTATTGCATCATGTTGATTTCCTGTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGATGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAGAAGAACACTTGCCATTATTCTGAGC-ACTCTGTGCATCTCCCCTCGTCCCTCCCAATAATACCAGGCCCTGAATTTCCTAAGATCAATGTTCCCAGATTATTAGACTCAGCCCAGATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGTTCTGTAAGTACTACAGGCA-GACAGGTAACAA-TTTGTGAGATTTGAGGGT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1623843 658 + 32716333 ataat------------attata--------------tgatacaa-----ataatGAGCTGGGCAGAGATAAAATCATGcagaaatcgtgctaga-------tgctttacttgtttaagtttcc-----caacaaccctgcaatgtagacattaacatcccctttacatttgaataa-actggatcgtagatgcttaagaacctgaagcaaataagtgttg-aaactaagcatgatcccaaatccctcacacgtcaaacttta-------cgt-tcatgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACATAGGACCTTCCAATAACTGCCAGTCACACAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCTGTGCATCTCCCCTCATGTCTCCCAACAATACTGGGCCCTGAATTTCCTAAGATCAATGTTCCCAGATTATTAGACTCAGCCCAGATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGTTCTGTAAGTACTACAGGCA-GACAGGTGACAA-TTTGTGAGATTTGAGGGT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152688440 648 - 185818997 ATATT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGCAGAGGTAAAATCTTGCAGAAATCATGCTAGA-------TGC---------TTACGTTtcc-----caacaaccctgcaatatagacattaacatcccctttacatttgaataa-actggatcttacatacttaagaacctgaagcaaataagtgttg-aaactaagtatgattccaaatccctcacacgccgaacttta-------tgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCCGGGCATCTCCCCTCATCCCT-CTGATAATACCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCGCCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGGGAGT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159496519 648 - 192294377 ATATT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGCAGAGGTAAAATCTTGCAGAAATCATGCTAGA-------TGC---------TTACGTTtcc-----caacaaccctgcaatatagacattaacatcccctttacatttgaataa-actggatcttacatacttaagaacctgaagcaaataagtgttg-aaactaagtatgattccaaatccctcacacgccgaacttta-------tgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCTGGGCATCTCCCCTCATCCCT-CTGATAATACCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCACCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGGGAGT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5941367 648 + 9440265 ATATT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGCAGAGGTAAAATCTTGCAGAAATCATGCTAGA-------TGC---------TTACGTTtcc-----caacaaccctgcaatatagacattaacatcccctttacatttgaataa-actggatcttacatacttaagaacctgaagcaaataagtgttg-aaactaagtatgattccaaatccctcacacgccgaacttta-------tgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCCGGGCATCTCCCCTCATCCCT-CTGATAATACCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCGCCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGGGAGT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5685620 648 + 21915920 ATATT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGCAGAGGTAAAATCTTGCAGAAATCATGCTAGA-------TGC---------TTACGTTtcc-----caacaaccctgcaatgtagacattaacatcccctttacatttgaataa-actggatcttacatacttaagaacctgaaacaaataagtgttg-aaactaagtatgattccaaatccctcacacgccgaacttta-------tgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCCGGGCATCTCCCCTCATCCCT-CTGATAATACCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCGCCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGGGGGT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12322669 638 - 90373283 ATATT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGCAGAGGTAAAATCTTGCAGAAATCATGCCAGA-------TGC---------TTACGTTtcc-----caacaaccctgcaatgtagacattaacatcccctttacatttgaataa-actggatcttagatgcttaataacctgAAGCAAATAAGTGTTG-AAACTAAGTATGAT----------CCACACGCCGAACTTTA-------TGT-TCTTGCATTGCATCGTGTTGATTTCCTGTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCGTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCCGGGCATCTCCCCTCGTCCCT-CTGATAATATCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCGCCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGGGGGT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 664429 648 + 1337817 ATATT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGCAGAGGTAAAATCTTGCAGAAATCATGCTAGA-------TGC---------TTACATTtcc-----caacaaccctgcaatgtagacattaacatcccctttacatttgaataa-actggatcttacatacttaagaacctgaagcaaataagtgttg-aaactaagtatgattccaaatccctcacacgccaaacttta-------tgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTGAGC-ACTCCGGGCATCTCCCCTCATCCCT-CTGATAATACCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCGCCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGGGGGT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 633673 661 - 3237654 atattatgatacaaataattata--------------tgatacaa-----ataataaGCTTGGCAGAGGTGAAATCTTGCAGAAATCATGCTAGA-------TGC---------ttaagtttcc-----caacaaccctgcaatgtagacattaacatcccctttacatttgaataa-actggatcttagatgcttaagaacctgaagcaagtaagtgttg-aaactaagtatgatcccaaatccctcacacaccaaacttta-------tgt-tcttgtattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTACTATCTATAATATAAGTAGTTATTTGCATACTGGTTCTGGCACTGTCTTACACAGGACCTTCCAATAACTGCCAGTCACATAGTGACGATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTCTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACGTGCCATTATTCTGAGC-ACTCCGGGCATCTTCCCTCATCCCTCCTGATAATACCAGACCCTGAGTTTCCTAAGATCAATGTTCCCAGATTATTAGTCTCCGCCCCAATTCCAGGG---TTTCCATC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTATAAGTCCTACAGGCA-GGCAGGTGACAA-TTTGTGAGATTTGAGGGT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19172280 657 + 50472720 ATAAT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGAAGAGGTAAAATCTTGCAGAaagcatgctaga-------tgctttacttgggtaagcttcc-----caacaaccctacaatgtagacattaacatctcctttacatttgaaata-actggatcttagatgcttaagaacctgaaggaaatgag-tttg-aaacgaaatctgatcccaattccctcacaggccaaacttta-------tgc-tcttttattgcatcatgttgatttcctgTGCTGAGGAAAAAGTTACTTTTCCTTTTGCTGTCTATAATATAAGTAGTTCTTTGCATACTGGTTCTGGCACTGTCTTACACAGGATCTTCCAATAACTGCCAGTCACATAGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTCTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCTGTGATTCTGAGC-ACTCTGGGCATCTCCCCTTGTCCCTCCCAATAACACCAGGCCCTGAATTTCCTAAGATCAATGTTCCCAGAGTCTTAGACTCAGCCCAGATTCCAGGG---TTTCTGTC-AAATTCT-TCC-TC-GGTAATTTGAG-----ATT-TTGAGGTCTATGAGTCCTACAGGCA-GACAGGTGGTAA-TTTATGAGATTCAAGGGT i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2511978 656 + 13128814 ATAAT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGAAGAGGTAAAATCTTGCAGAaagcatgctaga-------tgctttgcttgtttaagcttca-----caacaaccctacaatgtagacattaacatcccctttacatttgaaata-actggatcttagatgtttaagaacctgaaggaaataagttttg-aaaataaatctgatcccaaatccctcacacgctaaacttta-------tgc-tcttttattgcatcatgttgATTTCTTGTTCTGAGGAAAAAGTTACTTTTCCTTTTGCTATCTATAATATAAGTAGTTCTTTGCATACTGGTTCTGGCACTGTCTTACGCAGAATCTTCCAATAACTGCCAGTCACATAGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTAATTGATCGACTTCTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGCACACTTGCCATGATTCTGAGC-ACTCTGGGCATCTCCCCTCATCCCTCCCAATAACACCAGGCCCTGAGTCTCCTAAGATCAATGTTCCCAGAGTCCTAGACTCAGCCCGGATTCCAGGG---TTTCTGTC-AAATTCT-TCC-TG-GGTAACTTGAG-----ATT-TTGAGGTC--TGAGTACTACAGGCA-GGCAGGTAACAA-TTTATGAGATTCAAGGGT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7049651 658 - 14377064 -TAAT------------ATTATA--------------TGATACAA-----ATAATGAGCTTGGAAGAGGTAAAATCTTGCAGAaagcatgctagc-------tgctttacttgtttaagcttcc-----caacaaccctacaatgtagacattaacatcccctttacatttgaaata-actggatcttagatgcttaagaaactGAAGGAAATAAGTTTTG-AAACTAAATCTGATCCCCAATCCCTCACATGCCAAACTTTA-------TGG-TCTTTTAATGCATCATGTTGATTTTCTGTACTGAGGAAAAAGCTACTTTTTCTTTTGCTATCTATAATGTAAGTAGTTCTTTGCATACTGGTTCTGGCACTGTCTTACGCAGGATCTTCCAATAACTGCCAGTCACATAGTGACAATTATGCCTGATTAAGCAGATCCTGTAAGTACTTGATCGACTTCTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATGATTCTGAGCAACTTTGGGCATCTCCCCTCATCCCTCCCAATAACACCAGGCCCTGAGTTTCCTAAGATCAATGTTCCCAGAGTCTTAGACTCAGCCCAGATTCCAGGG---TTTCTGTC-AAATTCT-TCC-TG-GGTAATTTGAG-----ATT-TTGAGGTCTGTGAGTCCTACAGGCA-GACAGGTGACAA-TTTATGAGATTCAAGGCT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6097305 643 + 9889416 -TAAT------------ATTATG--------------TGTTACAA-----ATAATGAGCTTGGAAGGGGTAAAATCTTGcagaaatcatgctaga-------tgctttacttgtttaagcctcc-----caacaaccctacaatgtagacattaacatcccctttacctttggaata-actggatcttagatgcttaagaacctgaaggaaataagtttta-aaactaaatctgatcccaaatccctcacacgccaaacttta-------tgc-tcttTTATTGCATCATGTTGATTTCCTGTGCTGAGGAAAAAGTTACTTTTCCTTTTGCTATCTATAATATAAGTAGTTCTTTGCATACTGGTTCTGGCACTGTCTTACACAGGATCTTCCAATAACTGCCAGTCACATAGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTCTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCACGATTCTGAGC-ACTCCGGGCATCTCACCTCATCCCTC--------------CCCTGAGTTTCCTAAGATCAATGTTCCAAGAGTCTTAGACTCAGCCCAGATTCCAGGG---TTTCTGTC-AAATTCT-TCC-TG-GATAATTTGAG-----ATT-TTGAAGTCTGTGAGTCCTACAGGCA-GACAGGTGACAA-TTTGTAAGATTCAAGGGT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16870560 666 + 47401472 ACAAC------------ATTAC---------------TAATACAA-----ATAATGAACTTGGCAGAGGTAAAATCTCAcagcaatcatgctaaatacaatcatcattactagcttaagcttca-----taacaaccctacaatgtaggcattaaca-tccttttacattcaaataa-actggatgttagatgcttaagtacctgaagtaagtaagtgcta-aaactaagtctgatccctaatctcttgcacgccaagattcc-------tgg-tatttcatttcatcatgttgatttcctgTGCTGAGGAAAAAGTTATTTTTCCTTTTATTATCTGTGATGTAGGTAGTTCTTTGCGTACTGGTTCTGGCACTGTCTCACACGGGAGCTTCCAATAACTGCCAGTCACATGGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGCAGCCAAAGGGAAAAGAACATTTGCCATTATTCTAAGC-ACTCTGGCCATCTCCTCTTGTTCCTCTCAATAGAACCAGGCCCTTAGATTCCTAAGATCAATGTTCCCAGATTCTTAGACTCAGCCCAGATTCCAGGG---TTTCTATCAAAATACT-TCCTTA-GATATTTTGAA-----TTT-TTGAGGTCTTTAAGTCCTACAAGCA-GATAGGTGATGATTTTGTGAGATTTGAGTGT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18359480 647 - 38779656 GTAAT------------GTTAC---------------TAATATAA-----ATCATGAACTTGG-AAAGGTAGAATCATGGATAAATCATGCAAAG-------AGCCTCACTCGCTTAAGCTTCA-----TAACAAACGTACAACTT------------CCCTTTTACCTTAGAATAA-AATGAATCTTAGttgcctaagaacctgaagcaaatacgtgtgg-aaactaagtctgatcccaaatctcttgcaggccaaaattca-------tggttctctcctttcatcatgttgcttttctgTGCTGAGGACAAAGTTATTTTTCCTTTTACCATCTTTGATGTAGGTAGTTCTTTGCCTACTGGTTCTGGCACTGTCTCCCTCAGGAGCTTCCAATAACTGCCAGTCACATGGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGAAGCCAAAGGGAAAAGAACATTTGCCATTATTCTAAAC-ACCCTGACCATCTCTCTTTGTCTGTCCCGGTGATACTCGGCCCTGAGATTCCTAAGACTAGTGTTCCCTGCTTCTTAGACTCAGCCCAGATTTCAAGG---GTTCTATC-AAATGCT-TCCTTA-GATAATTTGAAT----TTT-TTGAGGTCTTTAAGTCCTACTAGAA-GACAGGTGCTGA-TTTGTGAGGTTGGAGGGT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75848290 652 + 98207768 CTAGT------------GATGG---------------TGACACCAGGTGTATAATGAACTTGGCAGAGACCACTTCTC-----------CTTAGG-------TGCCTTTCTTGTTCAAGCTCAA-----TATGAGCATTACAATGCAGACATTAAACTGACTTTTCCATCTGAAAAACAGTGAGTCTTAGGTGCTTAAGCACTTGGAGA----GAGTGACA-AAAGTAAGCTTCCTCC--AACCCCCCCCCCCCCAAGTTCTAATGTCTTTGC-TCTTTCCTTACGCAACGCTGACTTG-TGTGCTTAAGGAAAAG---CTTTTACTTTTGCTCTCTATAATTTAGGTAGCTCTTTGCATCCTGGCTCTGGCTCTGTGTCACATAGGAGCTTCCAATAACTGCCAGTCACATGGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCTGAAGCCAAAGGGAAAAGAACACTTGCCGTTATCCTGTGC-ACTCTGC-CATCTCCCCTTGTCCCTCTTGATAATACCGGGCTCTGGATTTCCTAAGATCGGTCTCCCAAGATACTGAGAGTCAG-CCAGATCCCAAAGTTATTTTAATA-AAATGTG-TTC-TGAGGTAATTTGAA-----TTTCTTGAGGTCCGTGACTCTTATAAACA-GAAGGGGGATGA-TATGTGAGATTGGAAGGG i mm10.chr16 C 0 C 0 s canFam3.chr31 11474133 664 + 39895921 ATATT------------ATTATGAAAAATAGTACCACTAATACAA-----ACAATGGACCTGACAGAGATAAGatgttgcagaagtcatgctagg-------tgccttacttgtttaagcttatttaagctacagctatgcaatgtaggcattaacatttcttttacgctgcaataa-actagagcttaaatgcttaagaacttgaagcaagtaaatgctgaaaacgaagtcagattcccattc---------caaaaattca-------tgc-ttttaaATCGCATCATGTTGATTTCCTGTATTGAGGAGAAG----TTTTGTCTTTTACTATCTAAAATATAGGTAGTTCTTTGCATAATGTTTCTGGCACTGTCTTACACAGGAGCTTCCAATAACTGCCAGTCACATGGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTAACATTCTGCAGCCAAAGGGAAAAGAACACTTGCCATTATTCTAAGC-ACTCTGGCCACCTCCCTTTGTCCCTCCCTATAACACCCGG--CTGAGTTTCCTAAGAACAGTGTTCCCTGATGCTTAGACTCAGCCCAGATTCCGGGG---TTTCTATC-AAATACTCTTT-TG-GGTAATATGAA-----TTT-TTGAGATCTGTAAACCCTATAAGCT-GACAGGTGACAA-TTTGTGAGATGTGAAGGG i canFam3.chr31 I 219 C 0 s dasNov3.JH568778 682500 647 - 6883506 CTAAT------------GTCGTT--------------TATTAAAA-----ATAACTAATTTCACAGAGGTATAATCTTGcagaaattatgctagg-------tgcccttttaa-ttaagcttca-----caagaatcctggattatagacattattatcccttttacagttgaataa-actagagctt---------agaacatggagcaaataagtgctg-aaaataagtctgaaaccaaatcattctcattctcaagtt-a-------cat-tctttcattgtattgtgctgATGCCCACAGATAAAGAAAAAGTTATTTTTCCATTTACTATCTAAAATGTAGGTAGTTCTTTGCATACTAGTTCTGGCACAGTCTCACCCAGAAGCTTCCAATAACTGCCAGTCACATGGTGACAATTATGCTTGATTAAGCAGATCCAGTAAGTACTTGATCGACTTTTTCCCATAAATGCTGACATTCCGCAGCCAAAGGGAAAAGAACACTTGCTGATATTCCAAGC-ACTCTGGCCATCTCCCATTGTCTTTCTCAATATTACCAGGTCTTGTGTTTCCTAAGAGCAGTGTTTCCAGATTCATAGACACTGCTCAGATTTCAGGG---TTTCTGTC-AAATACT-TCCTTG-GGTGATTTGAATTTGAATT-TTGAGTTTTGTAA-------AGACAGGGTAGgtagcag-tttgatagagctaggaat i dasNov3.JH568778 C 0 I 1364 a score=115933.000000 s hg38.chr21_GL383578v2_alt 61895 11 + 63917 AT-GTTCAGC-AG- s panTro5.chr21 899389 11 + 33445071 AT-GTTCAGC-AG- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584018 11 + 46275980 AT-GTTCAGC-AG- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496153 11 - 13858734 AT-GTTCAGC-AG- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1624501 11 + 32716333 AT-GTTCAGC-AA- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689088 11 - 185818997 AT-GTTCAGC-AA- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497167 11 - 192294377 AT-GTTCAGC-AA- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942015 11 + 9440265 AT-GTTCAGC-AA- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686268 11 + 21915920 AT-GTTCAGC-AA- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323307 11 - 90373283 AT-GTTCAGC-AA- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665077 11 + 1337817 AT-GTTCAGC-AA- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634334 11 - 3237654 AT-GTTCAGC-AA- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19172937 11 + 50472720 AT-GTTCAGC-AA- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2512634 12 + 13128814 ATCATTCAGC-AA- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050309 11 - 14377064 AT-GTTCAGC-AA- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6097948 11 + 9889416 AT-GTTCAGC-AA- i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16871226 12 + 47401472 AT-GCTCAGCAAA- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18360127 12 - 38779656 AT-GCTTAGTAAA- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75848942 12 + 98207768 GC-CTTTGAC-AAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11474797 12 + 39895921 AT-TTTTGGCAAA- i canFam3.chr31 C 0 C 0 e dasNov3.JH568778 683147 1364 - 6883506 I a score=1619630.000000 s hg38.chr21_GL383578v2_alt 61906 110 + 63917 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGATAATTCATTGTTAGCAATGTTGAAGTCCTCACAGTGCTCCAGAATCCTCTAGAAATACATAGGAAA-GAGTGCTTTC s panTro5.chr21 899400 110 + 33445071 GTATCATTGTTGCT----ATTGGTCATTCCATTCCAGATAATTCATTGTTAGCAATGTTGAAGTCCTCACAGTGCTCCAGAATCCTCTAGAAATACATAGGAAA-GAGTGCTTTC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584029 110 + 46275980 GTATCATTGTTGCT----ATTGGTCATTCTATTCCAGATAATTCATTGTTAGCAATGTTGAAGTCCTCACAGTGCTCCAGAATCCTCTAGAAATACATAGGAAA-GAGTGCTTTC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496164 110 - 13858734 GTATCATTGTTGCT----ATTCGTCATTCTATCCCAGATAATTCATTGTTAGCAATGTTGAAGTCCTCACAGTGCTCCAGAATCCTCTAGAAATACATAGGAAA-GAGTGCTTTC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1624512 110 + 32716333 GTATCATTGTTGCT----CTTTGTCATTCTATCCCAGATAATTCATTGCTAGCAATGTTGAAGTCCTCACAGTGCTCCAGAATCCTCTAGAAATACATAGGAAA-GAGTGCTTTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689099 110 - 185818997 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGATAATTCACTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497178 110 - 192294377 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGATAATTCACTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942026 110 + 9440265 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGATAATTCACTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686279 110 + 21915920 GTATCATTGTTGCT----ATTGGTCATTCTATTCCAGATAATTCACTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323318 110 - 90373283 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGATAATTCACTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665088 110 + 1337817 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGATAATTCACTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634345 110 - 3237654 GTATCATTGTTGCT----ATTGGTCATTCTATCCCAGGTAATTCATTGTTAGCAATGTTGAAGCCCTCACAGTGCTCCAGAATCCTCTAGAAATACACAGGAAA-GAGTGCTTTG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19172948 108 + 50472720 GTATCATTGTTGCT----ATTGGTCATTCTATTCCAGATAATTCATTGTTAGTGATGTTGAAGTCTTCA--GTGTTCCATAATCCTCCAGAAATACATAGAAAA-GAGTGCTTTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2512646 110 + 13128814 GTATCATTGTTGCT----ATTGGTCATTCTATTCCAGATAATTCATTGTTAGTGATGTTGAAGTCTTTACCGTGTTCCAGAACCCTCTAGAAATACATAGGAAA-GAGTGCTTTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050320 110 - 14377064 GTATCATTGTTACT----ATTGGTCATTCTATTCCAAATTATTCATTGTTAGTGATGTTGAAGTCTTCACCATGTTCCAGAATCCTCTAGGAATACATAGGAAA-GAGTGCTTTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6097959 110 + 9889416 GTATCATTGTTGCT----ATTGGTCATTCTATTCCAGATAATTCATTGTTAGTGATGTTGAAGTCTTCACAGTGTTCCAGAATCCTCTAGAAATACATAGGAAA-GAGTGCTTTG i aotNan1.NW_018487195v1 C 0 I 307 s micMur3.chr31 16871238 114 + 47401472 GTATCATTGTTGCTATTTATTGACCATTCTATCCCTAATAATTCACTGTTATGGATTTTGAAGTCTTTGCAATGTTTCAGAATCTTATAGAAATACATAGGAAA-GAATACTCTG i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18360139 101 - 38779656 GCATC-------------ATTGATCATCCTATCCCTTATAATTCGTTGTTATGGATTTTGAAGTCTTTGCAATGTTTCAGAATCTTGTAGAAATACATAGGAAA-GAGTGCTTTG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75848954 101 + 98207768 GTATTACTTTTGCT----TTTGGTCATTTTAACCTTGATAACTGACT----------TTGAAGTGTTCACAGTATCCCAGAACCCTCTAGAGTTTCATGCAAAGTAAGTGTCTAC i mm10.chr16 C 0 I 8 s canFam3.chr31 11474809 110 + 39895921 ATGTCATTGTTGCT----ATTGGTTATTGTATCCCTAATAATTCACTGCTATAAATTTTGATGTCTTTACAATGTGCCAGAATCCTCTAAAAATACATAGGTAA-AGGTGCTTTG i canFam3.chr31 C 0 I 27 s dasNov3.JH568778 684511 109 - 6883506 GTATCATTGATGTT----ATATGTCATTCTTCCCCTGATAATTGATTGCTTG-GATTTTAAAGTCTTCACAATGTTCCAAAACCCTCTAAAAATACACTAGAAA-GAGTCATTTG i dasNov3.JH568778 I 1364 C 0 a score=1515447.000000 s hg38.chr21_GL383578v2_alt 62016 116 + 63917 AAAATTGTTAATG--------------------------------CATACTATTATAAGAATATAAATATCCCCACAAGATAACCTGATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATTGGATGACTTCAGC--CGTTTCTC-- s panTro5.chr21 899510 116 + 33445071 AAAATTGTTAATG--------------------------------CATACTATTATAAGAATATAAATATCCCCACAAGATAACCTGATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATTGGATGACTTCAGC--CATTTCTC-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584139 116 + 46275980 AAAATTGTTAATG--------------------------------CATACTATTATAAGAATATAAATATCCCCACAAGATAACCTGATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATTGGATGACTTCAGC--CATTTCTC-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496274 116 - 13858734 AAAATTGTTAATG--------------------------------CACACTGTTATAAGAATATAAATATCCCCACAAGATAACCTGATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATTGGATGACTTCAGC--CGTTTCTC-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1624622 116 + 32716333 AAAATTGTTAACG--------------------------------CACACTATTATGAAAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATTGGATGACTTCAGC--AGTTTCTC-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689209 116 - 185818997 AAAATTGTTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATCGGATGACTTCAGC--AGTTTCTC-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497288 116 - 192294377 AAAATTGTTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATTGGATGACTTCAGC--AGTTTCTC-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942136 116 + 9440265 AAAATTGTTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATCGAATGACTTCAGC--AGTTTCTC-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686389 116 + 21915920 AAAATTGTTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATCGGATGATTTCAGC--AGTTTCTC-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323428 116 - 90373283 AAAATTGTTAATG--------------------------------CATGCTGTTATGAGAATATAAATATTCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTCATAGTCTGCTGATCGGAAGACTTCAGC--CGTTTCTC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665198 116 + 1337817 AAAATTGTTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATCGGATGACTTCAGC--AGTTTCTC-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634455 116 - 3237654 AAAATTGTTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTGCTGATCGGATGACTTCAGC--AGTTTCTC-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173056 116 + 50472720 AAAATTATTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTG-TTTTATAGTCTTTCGATCTGATGACTTCAGT--AGTTTCTC-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2512756 115 + 13128814 AAAATTATTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCCCAAGATAACCT-ATAGCTATTGGCTAGCACATTG-TTTTATAGTATTTCGATCTGATGATTTCAGT--AGTTTCTC-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050430 116 - 14377064 AAAATTATTAATG--------------------------------CATGCTATTATGAGAATATAAATATCCCCACAAGATAACCTCATAGCTATTGGCTAGCACATTA-TTTTACAGTCTTTTGATCTGATGACTTCAGT--AGGTTCTC-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098376 116 + 9889416 AAAATTATTAATG--------------------------------CGTGCTATTATGAGAATATAAATTTCCCCACAAGATAACTTCATAGCTATTGTCTAGCACATTG-TTTTATAATCTTTCGATACGATGACTTCAGT--AGTTTCTC-- i aotNan1.NW_018487195v1 I 307 C 0 s micMur3.chr31 16871352 115 + 47401472 AAAATTATAAATA--------------------------------CATGCTATTTTAAGATTGTAAACATCCTCATGAGATAACAACATAGCTATTGGCTAGCA-AGTG-TTTTACAGCCCACTAAACAGATGATTTCAGC--AGTTTCTC-- i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18360240 148 - 38779656 AAAATTACAAATAAAAAGAAGTTAGCCAGGAAAAAATTACAAATGCACACTATTGTGAGATTGTAAGCATCCCTGCCACATAGGACCATAGCTATTAGGTAGCACAGTG-TTTTATAGCTCACTGAACAGGTAACTTCAGC--AGTTTCTC-- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849063 97 + 98207768 ATGATTGTGAATA--------------------------------CTTAC-AATGTGAGAACATAAATCT------------------TGGCTATTGGTTAGAACCTTG-TTTAATCAACCACTGAGAAAGCAAGCTTAGC--ATTTTCTT-- i mm10.chr16 I 8 C 0 s canFam3.chr31 11474946 116 + 39895921 AAAATTATAGATT--------------------------------CAC---ATTATGAGAATGTAAACAACTCCATGAGAGAATATCATAGCTATTGACTAGCACATTGATTTTATAGTTCACTGAAAAGATGACTTTAGTTATGTCTCTC-- i canFam3.chr31 I 27 C 0 s dasNov3.JH568778 684620 100 - 6883506 AAAACTGAAAATG--------------------------------------------------TGAATGTCCCCATTATGTAATATCATAGCAATTGGTTAGTTTATTG-ATTTATAGTCAACTGTGAAGATAACTTCAGC--AATATTGCTT i dasNov3.JH568778 C 0 I 358 a score=153174.000000 s hg38.chr21_GL383578v2_alt 62132 10 + 63917 AAAAGGTGGC s panTro5.chr21 899626 10 + 33445071 AAAAGGTGGC i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584255 10 + 46275980 AAAAGGTGGC i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496390 10 - 13858734 AAAAGGTGGC i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1624738 10 + 32716333 AAAAGGTGGC i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689325 10 - 185818997 AAAAGGTGGC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497404 10 - 192294377 AAAAGGTGGC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942252 10 + 9440265 AAAAGGTGGC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686505 10 + 21915920 AAAAGGTGGC i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323544 10 - 90373283 AAAAGGTGGC i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665314 10 + 1337817 AAAAGGTGGC i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634571 10 - 3237654 AAAAGGTGGC i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173172 10 + 50472720 AAAAGCTGGC i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2512871 10 + 13128814 AAAAGCTGGC i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050546 10 - 14377064 AAAAGCCGGC i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098492 10 + 9889416 AAAAGCTGGC i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16871467 10 + 47401472 AAAAGGTGGC i micMur3.chr31 C 0 I 351 s otoGar3.GL873528 18360388 10 - 38779656 AAAAGGTGGC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849160 9 + 98207768 -AGAGGTAAC i mm10.chr16 C 0 C 0 s canFam3.chr31 11475062 5 + 39895921 AAAAG----- i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 685078 10 - 6883506 aaaaGGTGGC i dasNov3.JH568778 I 358 C 0 a score=3478782.000000 s hg38.chr21_GL383578v2_alt 62142 280 + 63917 CCAAGGTTCCTGTGTATCAGAATTGCTTGACAATTTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACTTAGAGTATTAGAGGAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCCGAAT---------GCTTTCCTCTAAAAATGACCCAGGGATTTGAGCTCTTCCTTTGGTGGGCTCCCCGTTTCAGTGTTCCTTGCTTGCAGCCATATAGATGAA-GAGATGAAGGTAG s panTro5.chr21 899636 280 + 33445071 CCAAGGTTCCTGTGTATCAGAACTGCTTGACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACTTAGAGTATTAGAGGAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAACGGGGGTCAAGCAACATTCCCGAAT---------GCTTTCCTCTAAAAATGACCCGGGGATTTGAGCTCTTCCTTTGGTGGGCTCTCCGTTTCAGTGTTCCTTGCTTGCAGCCATATAGATGAA-GAGATGAAGGTAG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584265 280 + 46275980 CCAAGGTTCCTGTGTATCAGAACTGCTTGACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACTTAGAGTATTAGAGGAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCCGAAT---------GCTTTCCTCTAAAAATGACCCGGGGATTTGAGCTCTTCCTTTGGTGGGCTCCCCGTTTCAGTGTTCCTTGCTTGCAGCCATATAGATGAA-GAGATGAAGGTAG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496400 279 - 13858734 CCAAGGTTCCTGTGTATCAGAATTGCTTGACAATCTTGACA-CCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACTTAGAGTATTAGAGGAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCGCTGAAATGGGGGTCAAGCAACATTCCTGAAT---------GCTTTCCTCTAAAAATGACCCAGGGATTTGAGCTCTTCCTTTGGTGGGCTCCCTGTTTCAGTGTTCCTTGCTTGCAGCCATATAGATGAA-GAGATGAAGGTAG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1624748 280 + 32716333 CCAAGGTTCCTGTGTATCAGAATTGCTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACTTAGAGTATTAGAGGAATATAAGTAGCTTAATGTAATATAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCCGAAT---------GCTTTCCTCTAAAAATGACCCAGGGATTGGAGCTCTTCCTTTGGTGGGCTCCCCGTTTCAGTGTTCCTTGCTTCCAGTCATATAGATGAA-GAGATGAAGGTAG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689335 281 - 185818997 CCAAGGTTCATGTGTATCAGAATTGCTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGTTGGGTTCCCCGTTTCAGAGTTCCATGCTTCCGGTCATTTAGATGAA-GAGATGAAGGCAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497414 281 - 192294377 CCAAGGTTCATGTGTATCAGAATTGCTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGTTGGGTTCCCCGTTTCAGAGTTCCATGCTTCCGGTCATTTAGATGAA-GAGATGAAGGCAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942262 281 + 9440265 CCAAGGTTCATGTGTATCAGAATTGCTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGTTGGGTTCCCCGTTTCAGAGTTCCATGCTTCCGGTCATTTAGATGAA-GAGATGAAGGCAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686515 281 + 21915920 CCAAGATTCATGTGTATCAGAGTTGCTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGTTGGGTTCCCCGTTTCAGAGTTCCATGCTTCCGGTCATTTAGATGAA-GAGATGAAGGCAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323554 281 - 90373283 CCCAGGTTCATGTGTATCAGAATTGCTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGCAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGGTGGGTTCCCCGTTTCAGAGTTCCGTGCTTCCGGTCATATAGATGAA-GAGATCAAGGCAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665324 281 + 1337817 CCAAGGTTCATGTGTATCAGAGTTGCTCAACAATCTTGATACCCCTCTGGACCCTA-T-CCCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGTTGGGTTCCCCGTTTCAGAGTTCCATGCTTCCGGTCATTTAGATGAA-GAGATGAAGGCAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634581 281 - 3237654 CCCAGATTCATGTGTATCAGAATTACTCAACAATCTTGATACCCCTCTGGGCCCTA-T-CTCCCTGCCTCAGATTACCATACCCTCTAACACAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGTTTAATTTTATGTAGCACTCAAATGGGGGTCAAGCAACATTCCTGAAT--------GGCTTTCCTCCAAAAATGACCCAGGGATGTGAGCTCTTCCTTTGGTGGGTTCCCCGTTTCAGAGTTCCTTGCTTCCAGTCATATAGATGAA-GAGATGAAGGCAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173182 281 + 50472720 CCAATGTTCATATGTATCAGAATTGCTCAACAATCTCGATACCCCTTTGGGCCCTA-T-CCCCCTGCCTCAGATTACCATAACCTCTAACATAGAGTATTAGAGTAACATAAGTAGCTTAATGTAATAAAGCTTAATTTTATGTAGCACTCAAATGGGGATCAAGCAACATTCCTGAAT--------GACTTTCCTCTAAAAATGACCCAGGGATTTGAGCTCCTCCTTTGGAAGGCTTCCCGTTTCAGAGTTCCTTGTTTCCAGCCACATAGGTAAG-GGGGTGAAGGGAG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2512881 279 + 13128814 CCAACAGTCATATGTATCAGAATTGCTCAACAATCTCGATACCCCTCTGGGGACTA-T-CCCCCTGCCTCACATTATCATACCCTCTAAC--AGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGCTTAATTTTGTGTAGCACTCAAATGGGGATCAAGCAACATTCCTGAAT--------GGCTTTCCTCTAAAAATGACCCAGGGATTTGAGCTCTTCCTTTGGAAGGCTCCCTGTTTCAGAGTTCCTTGCTTCCAGCCACATAGGTAAA-GGGGTGAAGGGAG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050556 281 - 14377064 CTAATGTTCATATGTATCAGAATTGCTCAACAATCTCAATACCCCTCTGGGCCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACATGGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGCTTAATTTTATTTAGCACTCAAATGGGGATCAAGCAACATTCCTGAAT--------GGCTTTCCTCTAAAAATGACCCAGGGATTTGAGCTCTTCCTTTGGAAGGCTCCCCGTTTCAGAGTTCCTTGCTTCCAGCCACATAGGTAAA-GGGGTGAAGGGAG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098502 281 + 9889416 CCAATGTTCATATGTATCAGAATTGCTCAACAATCTCGATACCCCTCTGGACCCTA-T-CCCCCTGCCTCAGATTATCATACCCTCTAACATAGAGTATTAGAGTAATATAAGTAGCTTAATGTAATAAAGCTTAATTTTATGTAGGACTCAAATTGGGATCGAGCAACATTCCTGAAT--------GGCTTTCCTCTAAAAATGACCCAGGGATTTGAGCTCTTCCTTTGGAAGGCTCCCCGTTTCAGAGTTCCTTGCTTCCAGCCACATAGGTAAA-GGGGTGAAGGGAG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18360398 263 - 38779656 CCAAAGCTGATGTGTATCAGAATCCTTCAAGAAGCTTGGTACACC-CTGGACCCCA-T-CCCCCTGCCTCAGACCATCATACCCCATAATACAGACTGTTAAGGTGATATAAGTATATTAACACAATACACTTTAATTTCA----------ACATGG---TCAAACAGCATTTCTG-AT--------GGCCTGCCTCACAAAATGACCCAAGGATTCAGACTCTTCCCTTAGTGAGCTCAC-ATTTTGGAGTTCCTGGCTTCCAGCCATATAAA--AA-GGGTTGGTGAAGC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849169 276 + 98207768 CCAAGGCTTATATGTGCAGGGGTTATTCACCAAGCGTGGTACTCCCAGGGGCCCTG-T-GTTCTTTCCTTATGCTCTCAGACTCTCTAACCTGGAGAACTGGTATAACACACGTACCTTAA--GAAGTTAGTTTCATTTTGTATTGTGCTGTGGTCTGGATCCA-TGTCATGCATGGATGAATGAAGGACATTCCTCAGATAATGGCCCAGGGCTTCTTGTTCCTTCCTCTATAGGCTCC--------GAAGTCCTTG--TCTAGCCATCTAGGTCAA-GCGGCGAGAGGAG i mm10.chr16 C 0 C 0 s canFam3.chr31 11475067 270 + 39895921 -----------GTGTATCAGAATCGCTCAATGAGCTAGATACTGCTCTGAGTCCTA-TGCTCCCTGCCTCAGACTATCATACTATCAAACGTAGAGTATTAGGGTAATAAAagtggcttaagacaataaaatttaattttgtgtggcactctaatctgggtcatgcagcattcctaaat--------ggctctcctccaaaaatgactcagggattcagcctttttctatagtgggctccATAGTTCAGTGTTCATTGTTTCCTGCTATAGAGATAAA-GGGAT-AGGAAAG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 685088 279 - 6883506 CCAAGTCTCCTGTGGAGCAGAATCACTTAGGGAGCTAGATAAC---TTGGGCCCTACT-GTCCCTGCCTCAGTCAATCATCCTCTGTAACATGGAGTATAAGGGTAATATAAGTGAATTAACATGATTAAGTTC-ACATTATGTGGCATTCCAATAGGGGTCAAACAGCAGTCCTGAAT--------TGCTCTCTTTCAAACATGAGTCAAGGATTCAGGCTTTTTCCATAGTGGGCTCTGCTTCTCAGAGTTCATTGCTTCCAGTCATATCGACAAAGGAGAAGGGGTTAG i dasNov3.JH568778 C 0 I 917 e micMur3.chr31 16871477 351 + 47401472 I a score=194873.000000 s hg38.chr21_GL383578v2_alt 62422 17 + 63917 CCAAAGAAAGAGTAAGG s panTro5.chr21 899916 17 + 33445071 CCAAAGAAAGAGTAAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584545 17 + 46275980 CCAAAGAAAGAGTAAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496679 17 - 13858734 CCAAAGCAAGAGTAAGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625028 17 + 32716333 CCAAAGAAAGAGTAAGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689616 17 - 185818997 CCAAAGAAAGAGTAAGG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497695 17 - 192294377 CCAAAGAAAGAGTAAGG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942543 17 + 9440265 CCAAAGAAAGAGTAAGG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686796 17 + 21915920 CCAAAGAAAGAGTAAGG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323835 17 - 90373283 CCAAAGAAAGAGTAAGG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665605 17 + 1337817 CCAAAGAAAGAGTAAGG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634862 17 - 3237654 CCAAAGAAAGAGTAAGG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173463 13 + 50472720 AC----AAAGAGTAAGG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2513160 17 + 13128814 ACAAAGAAAGAGTAAGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050837 17 - 14377064 ACAAAAAAAGAGTAAGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098783 17 + 9889416 ACAAAGAAAGAGTAAGG i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18360661 17 - 38779656 CCCCAAAAGAAGTGAAG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849445 17 + 98207768 ACCCTGAAGGAGTAAGG i mm10.chr16 C 0 C 0 s canFam3.chr31 11475337 17 + 39895921 CTTAGGAAACAATAAGG i canFam3.chr31 C 0 C 0 e micMur3.chr31 16871477 351 + 47401472 I e dasNov3.JH568778 685367 917 - 6883506 I a score=32262.000000 s hg38.chr21_GL383578v2_alt 62439 2 + 63917 AA s panTro5.chr21 899933 2 + 33445071 AA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584562 2 + 46275980 AA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496696 2 - 13858734 AA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625045 2 + 32716333 AA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689633 2 - 185818997 AA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497712 2 - 192294377 AA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942560 2 + 9440265 AA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686813 2 + 21915920 AA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323852 2 - 90373283 AA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665622 2 + 1337817 AA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634879 2 - 3237654 AA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173476 2 + 50472720 AA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2513177 2 + 13128814 AA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050854 2 - 14377064 AA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098800 2 + 9889416 AA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18360678 2 - 38779656 AA i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849462 2 + 98207768 AG i mm10.chr16 C 0 C 0 s canFam3.chr31 11475354 2 + 39895921 AA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 686284 2 - 6883506 aA i dasNov3.JH568778 I 917 C 0 e micMur3.chr31 16871477 351 + 47401472 I a score=600634.000000 s hg38.chr21_GL383578v2_alt 62441 43 + 63917 AACCTAATGAGAGGAGGACATGAATCTCAAAGCAGATATTATG s panTro5.chr21 899935 43 + 33445071 AACCTAGTGAGAGGAGGACATGAATCTCAAAGCAGATATTATG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584564 43 + 46275980 AACCTAGTGAGAGGAGGACATGAATCTCAAAGCAGATATTATG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496698 43 - 13858734 AACCTAGTGAGAGGAGGACATGAATCTCAAAGCAGATATTATG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625047 43 + 32716333 AACCTAGTGAGAGGAGGACATGAATCTCGAAGCAGATATTATG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689635 43 - 185818997 AACCTAGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497714 43 - 192294377 AACCTAGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942562 43 + 9440265 AACCCAGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686815 43 + 21915920 AACCTGGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323854 43 - 90373283 AACCTAGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665624 43 + 1337817 AACCTAGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634881 43 - 3237654 AACCCAGTGAGAAGAGGACATGAATCTCAAAGCAGATATTATG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173478 43 + 50472720 AACCTAGTGAAAGAAGGACTTGAATCTCAAAGCAGAAATTTTG i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2513179 43 + 13128814 AACCTAATGAAAGGAGTACTTGGATCTCAAAGCAGAAATTTTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050856 43 - 14377064 AGCCTAATGAAAGGAGGACTTGGATCTCAAAGCAGAAATTTTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098802 43 + 9889416 AACCTAGTGAAAGGAGGACTTGGATCTCAAAGCAGAAATTATG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16871828 43 + 47401472 AACCTACTGAGGGGAGGACATGAATCTCAAAGGAGATCTTATG i micMur3.chr31 I 351 I 179 s otoGar3.GL873528 18360680 43 - 38779656 AACCTAGTGAGGGGAGGGCATGAATCTCAAAAGATATCTGATG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849464 43 + 98207768 GACAGTAGGAGCTGAGGAGAGGATCCCCCCCAGAGATTTTATG i mm10.chr16 C 0 C 0 s canFam3.chr31 11475356 43 + 39895921 AACCTAGTGAAGTGAGAACATGAACCCCAAAGGAGATCTTATG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 686286 43 - 6883506 TATCTACTGAGGGAAGGATATATATCTAAAAGGAGATCTTATG i dasNov3.JH568778 C 0 C 0 a score=2393622.000000 s hg38.chr21_GL383578v2_alt 62484 194 + 63917 AGTCAGGCCCTACCATTGACGTGAACTGATTACAAGGACCCAGCTGAATGCAAGAGGGCTGGGAATATACCCAAGAGGCTAATAAACATGGTTTGGGG----AACACATAGCA-----TTTTCTCTGCTTCGTAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCAAAGTCAAGTAAGCATGCCACGTTTTGATTGA s panTro5.chr21 899978 194 + 33445071 AGTCAGGCCCTAccattgacgtgaactgattacaaggacccagctgaatgcaagagggctgggaatatacccaggaggctaataaacacggtttgggg----aacacatagca-----ttttctctgcTTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCAAAGTCAAGTAAGCATGCCACGTTTTGATTGA i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584607 194 + 46275980 AGTCAGGCCCTAccattgacgtgaactgattacaaggacccagctgaatgcaagagggctgggaatatacccaggaggctaataaacacggtttgggg----aacacatagca-----ttttctctgcTTCGTAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCAAAGTCAAGTAAGCATGCCACGTTTTGATTGA i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496741 194 - 13858734 AGTCAGGCCCTAccattgatgtgaactgattacaaggacccaactgaatgcaagagggctgggaatatacccaggaggctaataaacacggtttgggg----aacacatagca-----ttttctctgcTTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCAAAGTCAAGTAAGCATGCCACGTTTTGATTGA i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625090 194 + 32716333 AGTCAGGCCCTAcctttgacatgaactgattacaaggacccaactgaatgcaagagggctgggaatatacccaggaggctaataaacacagtttgggg----aacacatagca-----ttttctctgcTTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCAAAGTCAAGTAAGCATGCCATGTTTTGATTGA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689678 194 - 185818997 CGCCAGGCCCTACCTTTGATGTGAACTGATTACAGGGACCCAGCTGAATGCAAGAGGGCTGGGAATATGTCCAGGAGGCTAACAAACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTGATTGA i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497757 194 - 192294377 CGCCAGGCCCTACCTTTGATGTGAACTGATTACAGGGACCCAGCTGAATGCAAGAGAGCTGGGAATATGTCCAGGAGGCTAACAAACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTGATTGA i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942605 194 + 9440265 CGCCAGGCCCTACCTTTGATGTGAACTGATTACAGGGACCCAGCTGAATGCAAGAGGGCTGGGAATATGTCCAGGAGGCTAACAAACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTGATTGA i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5686858 194 + 21915920 CGCCAGGCCCTACCTTTGATGTGAACTGTTTACAGGGACCCAGCTGAATGCAAGAGGGCTGGGAATATGTCCAGGAGGCTAACAAACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTAATTGA i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12323897 193 - 90373283 GGCCAGGCCCTACCTTTGATGTGAACTGATGACAGGGA-CCAGCTGAATGCAAGAGGGCTGGGAATATGTCCAGGAGGCTAACAAACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTGATTGA i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665667 194 + 1337817 CGCCAGACCCTACCTTTGATGTGAACTGATTACAGGGACCCAGCTGAATGCAAGAGGGCTGGGAATATGTCCAGGAGGCTAACAAACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTGATTGA i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 634924 190 - 3237654 GGCGAAGCCCTATCTTTGATGTGAACTGATTACAGGGACCCAGCTGAATGCAAGAGGGCTGGGAATATGTCCAGGAGGCT----AACACACTTTGGGG----AACACATAGCA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATGGAGAAAAGCCAAGTCAAGTAAGCATGCCACGTTTTGACTGA i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173521 198 + 50472720 AGTCAGGCCCTACTTTTGGTGTGAACTGATCACAGGGACCCAACTGAATGCAGCAGGACCGGGAATATGCCCAGGAGGCTAACAAACACTGTTGGGGGAACGAACACATAGCA-----TTTTCTTTGCCTCATAAATTATATGAGTAAGGCTGATTAGAATAGAGAGAAGCAAAGTCAAGTAACCATGCCACATTTTGATGGA i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2513222 198 + 13128814 AGTCAGGCCCTAATTTTGGCATGAACTGATCACAGGGACCCAACTGAATGCAGGGGGACTGGGAATATGCCCAGGAGGCTAACAAACACGGCTGGGGGAACGAACACATAGAA-----TTTTCTCTGCCTCATAAGTTATGTGAGTAAGGCTGATTAGAATAGAGAAAAGCAAAGTCAAGTAACCATGCCACATTTTGATGGA i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7050899 198 - 14377064 AGTCAGGCCCTGTGTTTGCCGTGAACTGATCACAGAGAGCCAACTGAATGCAGGAGGACTAGGAATATGCCCAGGAGGCTAACAAACATGGTTGGGGGAACAAACACATAGCA-----TTTTCTCTGTCTCATAAGTTATGTGAGTAAGGCTGATTAGAATATAGAAAAACAAAGACAAGTAACCATGCCACATTTTGATGGA i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6098845 198 + 9889416 AGTCAGGCCCTACTTTTGGCATGAACTGATCACAGGGACCCAACTGAATGCAAGAGGACTGGGAATATGCCCAGGAGGCTAACAAACACGGCTGGGGGAACGAACACATAGCA-----TTTTCTCTGCCTCGTAAGTTATGTGAGTAAGGCTGATTAGAATAGAGAAAAGCAAAGTCAAGTAACCGTGCCACATTTTGATGGA i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18360723 180 - 38779656 GTCTGGGCCCTACTTTTGTCCAGAAATGATCACATGGACCCAATTGTA--------------GAATATGCCTGGAAGATTAATAAACACAATCTGGTA----AACACATAGCA-----TTTTCTTTGCCTTGTAAATTATGTGAGTATAGCTTGCTAGAACAGAGAAAAGCAAAATCAAGTAAGCATGATGAACTTTGATCAT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849507 192 + 98207768 GTCCAGTCACTGTCTTTGGCCAGAATTTTTCACGTGGACTCAAACGGATGGAAGATAGCTGAG-GTATGCCCTGGAGCCTAATAACCACACTTTGATG----AACACAGATCA-----TTTTCTCTGCCTCATAACTTACACGACGGAGGCTTTCTAGAACAG-GAAAAGCAAAGCCAAGCAAGCATGAAAAACTTTGATCAT i mm10.chr16 C 0 C 0 s canFam3.chr31 11475399 195 + 39895921 GGCCCGGTCCTAACTTTGGCCAGAACTGGTCACATGGACTTAACCAAATGCAAGAGGGTTGATATCATACCCAGGAGGCTAATAGACATAGTTTGGCG----AACACATAACATTTTTTTTTTTCTGCTTCATAGGTTATGTAAAT----CTGTATAAAGCAGAAAGAAGCAAAATCAAGTAAGCATGAGAAATTTTGATCAT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 686329 151 - 6883506 GGTTAGGCCTTACTATTGGCTGGAACTGGTTACATGGACTCAAATAAATAAAAGAGGGCTAGGAATATGCCAAGAAGGCTAA----------TTGGTG----AACACCTAGCA---------------------------------AAAGCT-----GAATAGAAAAAATTAAAATTGAGTAAGCATGACAAACTTCAATCCT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16871871 179 + 47401472 I a score=1708924.000000 s hg38.chr21_GL383578v2_alt 62678 126 + 63917 AATGGAATTTTAATGGGTACCCAACAATGCCTTTATAGTTAATATAAGCCTGTGTAAAGAAGATGTGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACATCTGCATTATGGTCTT s panTro5.chr21 900172 126 + 33445071 AATGGAATTTTAATGGGTACCCAACAATGCCTTTATAGTTAATATAAGCCTGTGTAAAGAAGATGTGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACATCTGCATTATGGTCTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584801 126 + 46275980 AATGGAATTTTAATGGGTACCCAACAATGCCTTTATAGTTAATATAAGCCTGTGTAAAGAAGATGTGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACATCTGCATTATGGTCTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 496935 126 - 13858734 AATGGAATTTTAATGGGTACCCAACAATGCCTTTATAGCTAATATAAGCCTGTGCAAAGAAGATGTGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACATCTGCATTATGGTCTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625284 126 + 32716333 AATGGAATTTTAATGGGTACCCAACAATGCCTTTATACTTAATATAAGCCTCTGCAAAGAAGATGTGACCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACATCTACATTATGGTCTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689872 126 - 185818997 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATATCAGCCTGTGCAAAGAAGCTGGGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACGTCTGCAGTATGGTCTT i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159497951 126 - 192294377 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATATCAGCCTGTGCAAAGAAGCTGGGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACGTCTGCAGTATGGTCTT i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942799 126 + 9440265 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATATCAGCCTGTGCAAAGAAGCTGGGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACGTCTGCAGTATGGTCTT i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687052 126 + 21915920 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATATCAGCCTGTGCAAAGAAGCTGGGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACGTCTGCAGTATGGTCTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12324090 126 - 90373283 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATATCAGCCTGTGCAAAGAAGCTGGGATCATAATATGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACGTCTGCAGTATGGTCTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665861 126 + 1337817 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATATCAGCCTGTGCAAAGAAGCTGGGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACGTCTGCAGTATGGTCTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 635114 125 - 3237654 AATGGAATTTTAATGGGCACCCAAAAATGCCTTTCTAGTTAATA-CAGCCTGTGCAAAGAAGCCAGGATCATAATGTGACTTTTAGGCAGGTTGTTTTCATTTCC--------------------------ATACATGTGCAGTATGGTCTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19173719 125 + 50472720 AATGAAGTTTTAATGGGTACCTAACAATGCCTTTATAG-TGATGTAAGCCTGTACAAAGAAGATGTGATCATAATGTAACTTGTAGGCAGGTTGTTTTCCTTTCC--------------------------ATAAGTCTGCAATAGAGTCTT i calJac3.chr21 C 0 I 2382 s saiBol1.JH378168 2513420 118 + 13128814 AATGAAGTTTTAATGCGTACCTAACAATGCCTTTATAGTTAATATAAGCCTGTACAAAGAAGATGTGATCATAATTTGACTTTTAGGCAGGTTGTTTTCCTT----------------------------------TCTGCAGTAGAGTCTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7051097 152 - 14377064 AATGAAGTTTTAATGGGTACCTAACAATGCCTTTATAGTTAATATAAGCCTGTATGAAGAAGATGTGATCATAATGTGACTTTTAGGCAGGTTGTTTTCCTTTCTGCAGTAGAGTCTTTGGAAAAATTTAAATACATCTGCAGTAGAGTCTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099043 126 + 9889416 AATGAAGTTTTAATGAGTACCTAACAATGTCTTTATAGTTGATATAAGCCTGTACAAAGAAGATGTGACCATAATGTGACTTTTAGGCAGGTTGTTTTCCTTTCT--------------------------ATACATCTGCAGTAGAGTCTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16872050 126 + 47401472 AATAGAATTTTAATGGGTACTCAGCAATATCTTTATAGTTAATATAAGCCTGTACAAAGAGTATATGATCATTATCTGACTTTTAGGTAGGTTGTTTTCATTTTC--------------------------ATACATCTGTAGTATGATGCT i micMur3.chr31 I 179 C 0 s otoGar3.GL873528 18360903 116 - 38779656 AATAGAATTTTAATGGATACCCAACAATGGCTTTAT----------AGCCCACACAAAGAATATATGATCATAGTGAGACTTTTAGGTAGGTTGTTTCTATTTTT--------------------------ATATATCTGTAGTATGATCAT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849699 118 + 98207768 AAC--AATTTTAATGGGTACCAGAGACTGCCTTTATAGTTAATATAAGCCTGCCTAAGGAATATGGGAACCTAAC----CTGTTGGGCATGCGATTTGTGTTACC----------------------------CCGGGTACAGGATGCTTCT i mm10.chr16 C 0 C 0 s canFam3.chr31 11475594 125 + 39895921 AATAGAATTTTAATGGGTTCCCAACAATGCCTTTATAGTTTATATAGGCCTCTGCAAAGAGTATATGACCATAATGTGACTTTTAGACAGGTTATTTTCATTTTC--------------------------ATA-ATCTATAGTGTGGTCCT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 686480 114 - 6883506 AACAGAATTTTAATAGGCACCTAACAAAGCCTTTATAGTTAATATAAACCTGCA-----------TTACCATAATGTGACTTTTAGGTAGGTCATTTTCATTTTC--------------------------ATACATCTAGA-TATGGTGCT i dasNov3.JH568778 C 0 C 0 a score=3552186.000000 s hg38.chr21_GL383578v2_alt 62804 258 + 63917 TGG------GAAAATTCACATGGGAACTGTTGATAAGGAATATCTGAAATcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-ccacatttggcttaatgctctgctattgtattgctgtcttaaaattcttaatcattttgaa-caagaggttgtgcattttcattttgcactggatccTTTTTCTAAGCACTCAGGCTGTCTCCCATTAC-----ATAGCTGGTCCTACCTGAAACTTGTGCCTT s panTro5.chr21 900298 258 + 33445071 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGAATATCTGAAATcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacacaggt-ccacatttggcttaatgctctgctattgtattgctgtcttaaaattcttaatcattttgaa-caagaggttgtgcattttcattttgcactggacccTTTTTCTAAGCACTCAGGCTGTCTCCCATTAC-----ATAGCTGGTCCTACCTGAAACTTGTGCCTT i panTro5.chr21 C 0 C 0 s panPan2.chr21 14584927 258 + 46275980 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGAATATCTGAAATcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagagctgtgctctcacacaggt-ccacatttggcttaatgctctgctattgtattgctgtcttaaaattcttaatcattttgaa-caagaggttgtgcattttcattttgcactggacccTTTTTCTAAGCACTCAGGCTGTCTCCCATTAC-----ATAGCTGGTCCTACCTGAAACTTGTGCCTT i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 497061 258 - 13858734 TGG------GAAAATTCAAATGGGAACTGTTGACAAGGAATATCTGAAATcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-ccacatttggcttaatgctctgctactgtattgctgtcttaaaattcttaatcattttgaa-caagaggttgtgcattttcattttgcactggacccTTTTTCTAAGCACTCAGGCTGTCTCCCATTAC-----GTAGCTGGTCCTACCTGAAACTTGTGCCTT i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625410 255 + 32716333 TGG------GAAAATTCAAATGGGAACCGTTGATAATGAATATCTGAAATcagggc----cagct----------t------cacgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-tcacatttggcttaatgct---ctattgtattgctgtcttaaaattcttaatcgttttgaa-gaagaggttgtgcattttcattttgcactggacccTTTTTCTAAGCACTCAGGCTGTCTCCCATTAT-----GTAGCTGGTCCTACCTGAAAGTTGTGCCTT i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152689998 257 - 185818997 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGGATATCTGAAACcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-ccacatctggcttaatgctccggtactgtattgctgtctttaaattcttaatcattttgaa-caagaggtcgtgcattttcattttgcgctggaccA-TTTTCTAAGCACTCAGGCTGTCTCCCGTTAT-----GTAGCTGGTCCTACCTGAAACTTGCGCCTC i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159498077 257 - 192294377 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGGATATCTGAAACcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-ccacatctggcttaatgctccggtactgtattgctgtctttaaattcttaatcattttgaa-caagaggtcgtgcattttcattttgcgctggaccA-TTTTCTAAGCACTCAGGCTGTCTCCCGTTAT-----GTAGCTGGTCCTACCTGAAACTTGCGCCTC i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5942925 257 + 9440265 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGGATATCTGAAACcagggc----cagct----------t------catgtaacctgtgttg----ttgca--ccgggctgtgctctcacaaaggt-ccacatctggcttaatgctccggtactgtattgctgtctttaaattcttaatcattttgaa-caagaggtcgtgcgttttcattttgcgctggaccA-TTTTCTAAGCACTCAGGCTGTCTCCCGTTAT-----GTAGCTGGTCCTACCTGAAACTTGCGCCTC i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687178 257 + 21915920 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGGATATCTGAAACcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-ccacatctggcttaatgctccggtactgtattgctgtctttaaattcttaatcattttgaa-caagaggtcgtgcattttcattttgcgctggaccA-TTTTCTAAGCACTCAGGCTGTCTCCCGTTAC-----GTAGCTGGTCCTACCTGAAACTTGCGCCTT i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12324216 258 - 90373283 TGG------GAAAATTCAAATGGGAACTGTGGATAAGGGATATCTGAAACcagggc----cagct----------t------cacgtaacctgtgtgg----ttgca--cagggctgtgctctcacaaaggt-ccacatctggcttaatgctccgctattgtattgccgtctttaaattcttaatcattttgaa-caagaggtcgtgcattttcaatttgcactggacccTTTTTCTAAGCACTCAGGCTGTCTGCCATTAT-----GTAGCTGGTCCTACCTGAAACTTGCGCCTT i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 665987 255 + 1337817 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGGATATCTGAAACcagggc----cagct----------t------catgtaacctgtgttg----ttgca--cagggctgtgctctcacaaaggt-ccacatctggcttaatgctccggtactgtattgctgtctttaaattcttaatcattttgaa-caagaggtcgtgcattttcattttgcgctggaccA-TTTTCTAAGCACTCAGGCTGTCTCCCGTTAT-----GTAGCTGGTCCTACCTGAAACTT--GCCTT i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 635239 258 - 3237654 TGG------GAAAATTCAAATGGGAACTGTTGATAAGGGATATCTGCAACcagggc----cagct----------t------cacgtaacctgtgttg----ctgca--cagggctgtgctctcacaaaggt-ccacatctggcttaatgctccgctattgtattgctgtctttaaattcttaatcattttgag-caagaggttgtgcattttcattttgcactggacccTTTTTCTAAGCACTCAGGCTGTCTCCCATTAT-----GTAGCTGGTCCTACCTGAAACTTGTGCCTT i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19176226 261 + 50472720 tGG------AAAAATTTAAATGTGAAGTGTTGATAAGGAATATCTGAAACcagggc----cagct----------t------catgtaacttgtcttgttttttgca--ca-ggctgtgctctcataaaggt-ctacattttgcttaatgctctgctattgtattgctgtcttaaaattcttaatcatttgaaa-caagaggttgtgcattttcatcttgcactgggcccTTATTCTAAGCACTCAGGCTGTCTTCCATTAT-----ATAGCTGGTCCTATCTGAAACTTGTGCCTT i calJac3.chr21 I 2382 M 481 s saiBol1.JH378168 2513538 258 + 13128814 TGG------AAAAATTTAAATGGGAAGTATTAATAAGGAATATCTGAAACcagggc----cagct----------t------catgtaacctgtcttg----ttgca--cagggctgtgctctcacaaaggt-ccacatttggcttaatgctctgctattgtattgctgtcttaaaattcttaatcatttggaa-caagaggtcatgcattttcatgttgcactgggcccTTATTCTAAGCACTCAGGCTGTCTTCCATTAT-----ATAGCTGGTCCTACCTGAAACTTGTGCCTT i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7051249 258 - 14377064 TGG------AAAAATTTAAATGGGAAGTGTTGATAAGGAATATCTGAAACcagggc----cagct----------t------catgtaacctgtcttg----ttgca--cagggctgtgctctcacaaaggt-ctacatttggcttaatgctctgctattgtattgctgtcttaaaattcttaatcatttggaa-caagaggtcgtgcattttcattttgcactgggcccTTATTCTAAGCACTCAGGCTGTCTTCCATTAC-----ATAGCTGGTCCTACCTGAAACTTGTGCCTT i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099169 258 + 9889416 TGG------AAAAATTTAAATGGGAAATGTTGATAAGGAATATCTGAAACcagggc----cagct----------t------catgtaacctgtcttg----ttgca--cagggccgtgctctcacaaaggt-ccacatttggcctaatgctctgctattgtattgctgtcttaaaattcttattcatttggaa-caagaggtcatgcattttcattttgcactgggcccTTACTCTAAGCACTCAGGCTGTCTTCCATTAT-----ATAGCTGGTCCTACCTGAAACTTGTGCCTT i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16872176 264 + 47401472 TGG------GAAAATCTACATGGAGGCTATTGGTAAGAAACACCTGACACcagggc----cagct----------tcgtgggcatataacctgtgttg----ttgca--cagcgctgtgctctcacaaaagc-acacatttggcttaatcctttgc-----tattgctgtcttaaatgtcttaataattttgaa-caagaggtcctgcttttttgttttgcactgagccATTATTCTAAGCACTCAGGCCATCTCTCAGCACTCAGGGTCGCCTGTCCTACCTAAAACTCATGCCTT i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18361019 263 - 38779656 TGG------GGAAATCTAAATGGAGATTATTGATAAAAAATACCCCAAACcagtgc----cagct----------tcataagcatgtgacttgtagtg----tccca--cggggctattctctcaccacggc-ccaagtttggcttaaagctttgc-----tattgctgtcttaaaatttctaataattttgaa-gaagaggt-ctgtattttcattttgtactgtgccATTATTCTAAGTGCTCAGCCCATCTCCCAACATTCAGGGTAGCTGGTCCTACCTAAAATTCATGATTT i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75849817 257 + 98207768 TGGAAAAAAAAAAACTCACATTAGTATTCTTGCTAAAGAATGTTTGAAACCA--------CAAATGTAATTTAGGT------CTTGTAACTTGTTTTT----ATTGAGTcaggactgagctcttacaagggc-tgacatttggcat----ctctgctatt------ctatcataaaaagcttaacaattatgaagcaagatgcagcacattttc-ttttgcactataccctgAGCCTGACCATTCTGAGTAGCTCTTATTAT-----GTAA-----CCTCCCTGTGATTGGCATGTT i mm10.chr16 C 0 I 2 s canFam3.chr31 11475719 259 + 39895921 GGG------GACAATCCAAGTAGGGACAATTGATAAGAGATACATGAAACcagggc----cggtt----------ttatgggcattcagcctgtgtta----ttgca--cagggctctgctctcagagggct-ccatatttgtgttaatgctccgc-----tatcgctgtcttaagagtcttagtaaatttgaa-catgggggtctgcatttttattttgtactaggccATTATTCTAAGCTCTCTGGACATCCCCCATCAT-----GTAGCTTATCCCACTTGAAACTCATGCCTT i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 686594 253 - 6883506 TGA------GAAAATCTAAAAGGAGCCTATTGACAAGGAATACTTGAAACTAGggcttcacaggt----------c------cac--aacctatgtcg----tcaca--ca--gttctgctctcacgaaggtcccacacttggttttatgttctga-----cattgctgtcttgaaattcttaataattttgaa-caagatacc-cacattttcattttgctctgagtcATTATTCTAAGCATTCTGGCCATCTCCCATTAT-----GTAGCTGGCCTTACCTGCAACTTATGACTT i dasNov3.JH568778 C 0 C 0 a score=4552381.000000 s hg38.chr21_GL383578v2_alt 63062 338 + 63917 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACATAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGATCTTTTAGAGAAGACAAGTTACAATAATAAAGTTCCAAGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCATGTGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCACTGTTTATTCTTACCTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGAGAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGTACAAGTAGTTG s panTro5.chr21 900556 338 + 33445071 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACATAGT-----------------------------------------------------------------------------------CTTTAAGATGCCG-------TCAATGCTAACTGATCTTTTAGAGAAGACAAGTTACAATAATAAAGTTCCAAGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCATGTGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCACTGTTTATTCTTACCTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGAGAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGTACAAGTAGTTG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14585185 338 + 46275980 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACATAGT-----------------------------------------------------------------------------------CTTTAAGATGCCG-------TCAATGCTAACTGATCTTTTAGAGAAGACAAGTTACAATAATAAAGTTCCAAGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCATGTGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCACTGTTTATTCTTACCTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGAGAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGTACAAGTAGTTG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 497319 338 - 13858734 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAT-------TCAATGCTAATTGACCTTTTAGAGAAGACAAGTTACAATAATAAAGTTCCAAGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCATGTGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCACTGTTTATTCTTACCTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGTACAAGTAGTTG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1625665 338 + 32716333 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTATGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGGCAAGTTACAATAATAAAGTTCCAAGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCCTGTGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGTAATTTGTTTTAATTGATATTCATTGGGCATCACTCCATTGTTTATTCTCGCCTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGTACAAGTAGTTG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152690255 338 - 185818997 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAGTAATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---TACAGGTGCATATGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTGTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATACATTTTAATTAAGTAACCTTTACTGCACAAGTTGTTG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159498334 338 - 192294377 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAGTAATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---TACAGGTGCATATGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGCACAAGTTGTTG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5943182 338 + 9440265 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAGTCATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---TACAGGTGCATATGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGCACAAGTTGTTG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687435 338 + 21915920 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAGTAATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---CACAGGTGCATATGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGCACAAGTTGTTG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12324474 338 - 90373283 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCCG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAGTCATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---CACAGGTGCATGTGAACATGGG-------------CCT-----ATGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGCACAAGTAGTTG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 666242 338 + 1337817 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAGTAATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---CACAGGTGCATGTGAACACGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAACCTTTACTGCACAAGTTGTTG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 635497 338 - 3237654 ATCAGTGATTAAAATTAAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TCAATGCTAATTGACCTTTTAAAGAAGACGAGTTACAGTAATAAAGTTCCAAGGGT------------GGGGGTGTGGACTCA---CACAGGTGCATGTGAACATGGG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTACCTACTCATGTGAGGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGAGTGTTTCAGCTGGATAAATTTTAATTAAGTAACCTTTACTGCACAAGTAGTTG i colAng1.NW_012116933v1 C 0 C 0 s saiBol1.JH378168 2513796 338 + 13128814 ATCAGTGCTTAAAATTGAGACTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCCG-------TCAATGCTAATTGACCTTTTAAAGAAGACAAGTTACAATAATAAAGTTCGACGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCATTTGAACATGAG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGGGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTAACTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGCAACCTTTGCTGTACAAGTAGTTG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7051507 338 - 14377064 ATCAGTGATTAAAATTGAGTCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCTG-------TCAAGGCTAATTGACCTTTTAAAGAAGACAAGTTACAATAATAAAGTTCCAAGGGT------------GGGGGTGTGGGCTCA---CACAGGTGCATGTGAACATGAG-------------CCT-----GTGC---------------------AAAGTTTACT--AGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTCTTAACTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGCAACCTTTACTGTACAAGTAGTTG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099427 332 + 9889416 ATCAGTGATTAAAATTGAGGCTTCAAGGATAAAATGAAGACACAGT-----------------------------------------------------------------------------------CTTTAAGATGCTG-------TCAGTGCTAATTGACC-CTTAAAGAAGACAAGTTACAACAATAAAGTTCCAAGGGT------------GGGGTTGTGGGCTCA---CACAGGTGCATGTGAACATGAG-------------CCT-----GTGC---------------------AAAGTTTATT--AGGAGCAATTTGTTTTAATTGAT-----TTGGGCATCATTCCATTGTTTATTCTTAACTACTCATGTGAAGAGTTGGTTGATGTCAATTGCACAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGCAACCTTTACTGTACAAGTAGTTG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16872440 334 + 47401472 ATTAGTGACTAAAATTGGGAGTTCAAGGATAAAATGAAGATACAAT-----------------------------------------------------------------------------------TCTTAAGATGCAG-------TCGATGCTAACTAACCTTTTAAAGAAGACAAGTAACAACAGCAAAGTTCTGCGTGTGTG-------AGGGGGGTGTGGTCTTA---CACATGTG--------CATGTG-------------CCT-----GTGC---------------------AAAGTTT-TT--AGGAGAAATGTGTTTTAATTGATATTTATTGGGCATCATTCCAATGTTTATTGTTAACTAGTCATGCGAAAAGTTGGTTGATGTGGATCGCAGAAACATTTGTTTCAGATAAATGGGTGTTTCAGTTGGATAAATTTTAATTAAGTAAGCTTTACTGTACAAGTACTTG i micMur3.chr31 C 0 C 0 s otoGar3.GL873528 18361282 431 - 38779656 CTTAGTAACTAAAATTGAGGTTTCAAGGATAAAATGAAGATATAATCTACTCTTTTTTGtttttgcagtttttggccagggccgggtttgaacccgccacctccaatatatggggccggggccctactcctttgagccacaggcaccacccTATACTGAGTAATCTTTCAAAGAGGACAAGTTACAA-AGCAATGTTCCGCGTGTGTG-------ATGGGGTTGTGGTCTTA---CACACGTGCACAT-AACATGTG-------------CCC-----ACAC---------------------GAAGTTTATT--AGAAGAAATTTGTTTTAATTGATATTTATTGGGCATCATTGCAATGTTTATTGTTAACTGCTCATGTGAAAAGTTGGTTGATGTCAATTGCAGAAACATTTGTTTCAGATAAATGGGCGATTCAGTTGGATAAATTTTAATTAAGCACGCTTTACTATACAAGCCGTTC i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75850076 344 + 98207768 ATCAGTGGCTTAAACTGTG-CTTCAGTAATAAATGGAGGAGGAAAT-----------------------------------------------------------------------------------ACTCA-GATGCAT-------ACCATGTAAACCCACTATTCA-------CAGTTTAC--TAGAGAAATTTTGTATGC------------AGACATATATGCACAAAGCATGTGTGTATGTGTCCACGTGGAAATGCGTATTTTCG-----GGGC---------------------AAACTTTATTAAAGGAGCAATTTGTTTTAATTGATATTCGCTGGGCTTCATTCCATTGTTTATTGTTAGCTACTCATGTGTACAGTTGGTTGATATCAGAAGCACAAACATTTGTTTCAGATAAATG-GCGTTTCAGTTGGATACATTTTAATTAAGCAACCTTTATTGTACAAGTAGCTG i mm10.chr16 I 2 C 0 s canFam3.chr31 11475978 366 + 39895921 ATCGGAGACTAACACTGGG--CTCAATGACAAAATGAAGCTTCAAT-----------------------------------------------------------------------------------CTTTAAGATAAGG-------TT-ATGCTAATTAAC--TTTAAAGAAGAAAAGTTACAATAGCAAAGCtgtgtgtgtgcatgtgtgtatgtgtgtgtatgcata---tgtgCATGCATATGAATAAATG-------------CCC-----ATGCAGGAATGTATTTTTTTAGGAAAGAGTTTATT--GGGAGCAATTTGTTTTAATTGATATTCATTGAGCATCATTCCGTTGCTTATTGTTAGCTACTCATGGGAAGAGTTGGTTGATGTCTATAGCACAAACATTTGTTTCAGATAAATGGGCGTTTCAGTTGGATAAGTTTTAATTAAGCAACCTTTATTGTACAAGTAGTTG i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 686847 324 - 6883506 ATCAGTGACAAAAACTGGAACTTCGATGATAAGT----------GT-----------------------------------------------------------------------------------CTTTAAGATGCAG-------TGAATACTAATTGCCCTTTCAAAGGAGACAAGTTACAATAGCA---------GGTT------------CTGTATGTGTTCATC---CACATGTGCACCCATGCAAGAA-------------TTTTTTTAGGGT---------------------AAAGTTTATT--GGGAGCAATTTGTTTTAATTGATATTCATTGGGCATCATTCCATTGTTTATTGTTAGCTACTCATGTGAAGAGTTGTTTGATGTTGATAGCACAAACATTTGTTTCAGAAAAATGGGTGTTTCAGCTGGGCAAGTTTTAATTAAGCAACCTTTATCATACTAGTAGATG i dasNov3.JH568778 C 0 C 0 e calJac3.chr21 19176487 481 + 50472720 M a score=2680724.000000 s hg38.chr21_GL383578v2_alt 63400 194 + 63917 CTTTTGAAGCCA--GGAGAAAAATGACTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTCTAACCTTGAATATAATTTTCACTATGAATGTCCTAAATATCTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCTTCTCCTATTGCAAATGCCTAGG s panTro5.chr21 900894 194 + 33445071 CTTTTGAAGCCA--GGAGAAAAATGACTATAATTTATTAATTCTATaatccag-aatctgaagatattgaatcttgtctactctaatcttgaatATAATTTTCACTATGAATGTCCTAAATATCTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCTTCTCCTATTGCAAATGCTTAGG i panTro5.chr21 C 0 C 0 s panPan2.chr21 14585523 194 + 46275980 CTTTTGAAGCCA--GGAGAAAAATGACTATAATTTATTAATTCTATaatccag-aatctgaagatattgaatcttgtctactctaatcttgaatATAATTTTCACTATGAATGTCCTAAATATCTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCTTCTCCTATTGCAAATGCTTAGG i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 497657 194 - 13858734 CTTTTGAAGCCA--GGAAAAAAATGACTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTCTAACCTTGAATATAATTTGCACTATGAATGTCCTAAATATCTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCTTCTCCTATTGCAAATGCCTAGG i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1626003 194 + 32716333 CTTTTGAAGCCA--GGAGAAAAATGACTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTATCTACTCTAACCTTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCAACAAGAATAAGGAATACG-AAAC-ATTTCCAATGTA--TTGTTAAA---TTATTCTCCTATTGCAAATGCCTAGG i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152690593 194 - 185818997 CTTTTGAAGTCG--GGAGTAAAATGCCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTGTAACCCTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCCTCTCCTACTGCAAATGTGTAAG i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159498672 194 - 192294377 CTTTTGAAGTCG--GGAGTAAAATGCCTATAATTGATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTGTAACCCTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCCTCTCCTACTGCAAATGTGTAAG i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5943520 194 + 9440265 CTTTTGAAGTCG--GGAGTAAAATGCCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTGTAACCCTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCCTCTCCTACTGCAAATGTGTAAG i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687773 194 + 21915920 CTTTTGAAGTCG--GGAGTAAAATGCCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTGTAACCTTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCCTCTCCTACTGCAAATGCGTAAG i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12324812 194 - 90373283 CTTTTGAAGTCA--AGAGAAAAATGCCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATACTGAATCTTGTCTACTCTAACCTTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCCTCTCCTATTGCAAATGCGTAAG i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 666580 194 + 1337817 CTTTTGAAGTCG--GGAGTAAAATGCCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGCCTACTGTAACCTTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGCTAAA---TTCCTCTCCTACTGCAAATGCGTAAG i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 635835 194 - 3237654 CTTTTGAAGCTG--GGAGAAAAATGCCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTCTAACTTTGAATATAATTTTCCCTATGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAC-ATTTCCAATGTA--TTGTTAAA---TTCCTCTCCTACTGCAAATGCGTAAG i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19176968 193 + 50472720 CTTTTGAAGCCA--AGAGAAAAATGGCTATAATTTATTAATTCTATAATCCAA-AATCTGAAGATATTGAATCTTGTCTACTCTAACCTTGAATATAATTTTCCCTGTGAATGTCCTAAATACTTGGTCACAAGAATAAGGAATACA-AAAA-A-ATCCAATGTA--GTGTTAAA---TTCTTCTCCTACTGCAAATGTCTAGG i calJac3.chr21 M 481 C 0 s saiBol1.JH378168 2514134 190 + 13128814 CTTTTGAAGCCA--AGAGGAAAATGGCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTCTAACCTTGAATATAATTTTCCCTGTGAATGTCCTAAATATTTGGCCACAAAAATAAGGAATACA-AAAA-A-ATCCAATGTA--GTGTTAAA---TTCTT---CTACTGCAAATACCTAGG i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7051845 193 - 14377064 CTTTTGAAGCCA--AGAGGAAAATGGCTATAATTTATTAATTCTATAATCCAG-AATCTGAAGATATTGAATCTTGTCTACTCTAACCTTGAATATAATTTTCCCTGTGAATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAA-A-ATCCAATGTA--GTGTTAAA---TTCTTCTCCTACTGCAAATGCCTAGG i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099759 193 + 9889416 CTTTTGAAGCCA--AGAGAAAAATGGCTATAATTTATTAATTCTGTAATCTAG-AATCTGAAGATATTGAATCTTGGCTACTCTAACTTTGAATATAATTTTCCCTGTGGATGTCCTAAATATTTGGCCACAAGAATAAGGAATACA-AAAA-A-ATCCAATGTA--GTGTTAAA---TTCTTCTCCTACTGCAAATGCCTAGG i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16872774 194 + 47401472 TTTTTGAAACCA--TGAGAAAAACTACTATAATTTGCTAATTCAA--ATCCAG-AATGTGAACATGTTGAATCTTGTCTACTGTAAACTTGAATGCAATTTTCCCTATGAATTTCCCAAATATTTGGCCACAAGAATAAGAAATAAG-CAAC-TTTTCCAGTGTAATGTGTTAAA---TTATTTTCCTACTGCAAATGCCTAGG i micMur3.chr31 C 0 I 3 s otoGar3.GL873528 18361713 198 - 38779656 CTTTTGAAGCCA--TGAGAAAAACTACTATACTTTGCTAATTTTGTTATGCAG-AATTTGAAGATATTGAATTTTGTCCAGTGTAACCTTGAATATAATTTTCCCTATGAATTTTTCAAGTATTTGGCCACAAGAAAAAGGAATAAGACAACATTTTCCAAGGTAATGTGTTAAG---TTCTTTCCCTACCTCTAATGCCAGGG i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75850420 197 + 98207768 CTTTTGAAACTATGGGGGAAAAACTACTTTAATTCTCTAGTTCTGTTATCCAG-AACTGGAAGCCGTTCAAGATTATCTTCTGTGACCTTGAATGAGATTTTGTCTCCGAGTGTCCAAAATATTTGCACATAAAAATGAGGAA---G-AAAC-GTGTCCAATGTAATATATTAGGC-TTTTTTCCCCTACTGCAAATGCCTGTG i mm10.chr16 C 0 C 0 s canFam3.chr31 11476344 180 + 39895921 TTTTTGAAACCA--GGAG-AAAACCACTATAATTTGCTAATTCTGTTATCAAG-AATCTGAAGGTTTTGAGTCTTGTCTACTATAACCTCGAATACAATTTTGGCTATAAGTGTCCCAAATA----------------AGAAATAAG-AAAC-TTTTCCAATGTA--TTGTTCAACTTTTTTTTTTCTGTTGTAAATATCAAGA i canFam3.chr31 C 0 C 0 s dasNov3.JH568778 687171 187 - 6883506 TTTTTGAAACTC--TGAGAA--------CTAGTTTTCTAATTCTGGTATCCAGAAATCTGAAGAAGTTGAGTTATGTCTACTGTAACTTTAAATGAGATTTTGATTAGGAATGTCACAGATATTTAGCAATAAGAATAAGGAGTAAG-AAGC-ATTCTTAATGCAACTAACTAAA---TTTTT-TCCTAATGCAAATGCTGGG- i dasNov3.JH568778 C 0 C 0 a score=5700.000000 s hg38.chr21_GL383578v2_alt 63594 11 + 63917 CATttaattat s panTro5.chr21 901088 1 + 33445071 C---------- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14585717 1 + 46275980 C---------- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 497851 1 - 13858734 C---------- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1626197 1 + 32716333 C---------- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152690787 1 - 185818997 C---------- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159498866 1 - 192294377 C---------- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5943714 1 + 9440265 C---------- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687967 1 + 21915920 C---------- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12325006 1 - 90373283 C---------- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 666774 1 + 1337817 C---------- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 636029 1 - 3237654 C---------- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19177161 1 + 50472720 C---------- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2514324 1 + 13128814 C---------- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7052038 1 - 14377064 C---------- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099952 1 + 9889416 C---------- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18361911 1 - 38779656 C---------- i otoGar3.GL873528 C 0 C 0 s mm10.chr16 75850617 1 + 98207768 C---------- i mm10.chr16 C 0 N 0 s canFam3.chr31 11476524 1 + 39895921 C---------- i canFam3.chr31 C 0 I 21 s dasNov3.JH568778 687358 1 - 6883506 C---------- i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16872968 3 + 47401472 I a score=-47801.000000 s hg38.chr21_GL383578v2_alt 63605 57 + 63917 taattaaataat---ttaatttatttattattataaatttattaatataaattaaataat-- s panTro5.chr21 901089 2 + 33445071 ----------------------------------------------------------AC-- i panTro5.chr21 C 0 C 0 s panPan2.chr21 14585718 2 + 46275980 ----------------------------------------------------------AC-- i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 497852 2 - 13858734 ----------------------------------------------------------AC-- i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1626198 2 + 32716333 ----------------------------------------------------------AC-- i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152690788 2 - 185818997 ----------------------------------------------------------AC-- i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159498867 2 - 192294377 ----------------------------------------------------------AC-- i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5943715 2 + 9440265 ----------------------------------------------------------AC-- i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687968 2 + 21915920 ----------------------------------------------------------AC-- i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12325007 2 - 90373283 ----------------------------------------------------------AC-- i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 666775 2 + 1337817 ----------------------------------------------------------AC-- i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 636030 2 - 3237654 ----------------------------------------------------------AC-- i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19177162 2 + 50472720 ----------------------------------------------------------AC-- i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2514325 2 + 13128814 ----------------------------------------------------------AC-- i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7052039 2 - 14377064 ----------------------------------------------------------AC-- i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099953 2 + 9889416 ----------------------------------------------------------AC-- i aotNan1.NW_018487195v1 C 0 C 0 s otoGar3.GL873528 18361912 2 - 38779656 ----------------------------------------------------------AC-- i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11476546 48 + 39895921 TCATAGAATCATCTGtttctttctttctttcttttttttttttggt------------gc-- i canFam3.chr31 I 21 I 3 s dasNov3.JH568778 687359 8 - 6883506 ----------------------------------------------ATAA--------ACTT i dasNov3.JH568778 C 0 C 0 e micMur3.chr31 16872968 3 + 47401472 I a score=3193704.000000 s hg38.chr21_GL383578v2_alt 63662 246 + 63917 aatttaattaTTCTCAAGCTCA-----------TATATA-CAGGACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATTTCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTGATTGCtgcttcc------acaccacttgtatacattac-tactgtagtatatcacatttcatagggatgtatttatttatacatatgccaaaggaccacactgaactcttaattccttgagaacaggtgctgt--------atctta s panTro5.chr21 901091 246 + 33445071 AATTTAATTATTCTCAAGCTCA-----------TATATA-CAGGACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATTTCTAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTGATTGCtgcttcc------acaccacttgtatacattac-tactgtagtatatcacatttcatagggatgtatttatttacacatatgccaaaggaccacactgaactcttaattccttgagaacaggtgctgt--------acctta i panTro5.chr21 C 0 C 0 s panPan2.chr21 14585720 246 + 46275980 AATTTAATTATTCTCAAGCTCA-----------TATATA-CAGGACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATTTCTAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTGATTGCtgcttcc------acaccacttgtatacattac-tactgtagtatatcacatttcatagggatgtatttatttacacatatgccaaaggaccacactgaactcttaattccttgagaacaggtgctgt--------acctta i panPan2.chr21 C 0 C 0 s gorGor5.CYUI01015003v1 497854 246 - 13858734 AATTTAATTATTCTCAAGCTCA-----------TATATA-CAGGACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATTTCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTGATTGCtgcttcc------acaccacttgtatacattac-tactgtagtatatcacatttcatagggatgtatttatttacacatatgccaaaggaccacactgaactcttaattccttgagaacaggtgctgt--------gtctta i gorGor5.CYUI01015003v1 C 0 C 0 s nomLeu3.chr25 1626200 246 + 32716333 AGTTTAATTATTCTCAAGCTCA-----------TATATA-CAGGACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATTTCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTGATTGCCGCTTCC------ACACCACTTGTATACATTAC-TACTGTGGTATATCACATTTCATAGGGATGTATTTATTTACACATATGCCAAAGGACCACACTGACCTCTTAATTCCTTAAGAACAGGTGCTGC--------ATCTTA i nomLeu3.chr25 C 0 C 0 s rheMac8.chr3 152690790 247 - 185818997 AATTTAATTATTCTCAAGCTCC-----------TATACA-CAGAACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATGCCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATCGCTGCTTCC------ACACCACTTGTATACATTACTTACTGTAGTTTATCGCATTTCATAGGGATGTATTTATTTACACATATGTCAAAGGAccacactgaactcttaattccttgggaacaggtgctgt--------agctta i rheMac8.chr3 C 0 C 0 s macFas5.chr3 159498869 247 - 192294377 AATTTAATTATTCTCAAGCTCA-----------TATACA-CAGAACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATGCCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATCGCtgcttcc------acaccacttgtatacattacttactgtagtttatcgcatttcatagggatgtatttatttacacatatgtcaaaggaccacactgaactcttaattccttgggaacaggtgctgt--------agctta i macFas5.chr3 C 0 C 0 s macNem1.NW_012019910v1 5943717 247 + 9440265 AATTTAATTATTCTCAAGCTCA-----------TATACA-CAGAACCTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATGCCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATCGCtgcttcc------acaccacttgtatacattacttactgtagtttatcacatttcatagggatgtatttatttacacatatgtcaaaggaccacactgaactcttaattccttgggaacaggtgctgt--------agctta i macNem1.NW_012019910v1 C 0 C 0 s cerAty1.NW_012002954v1 5687970 246 + 21915920 AATTTAATTATTCTCAAGCTCA-----------TATACA-CAGAACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATGCCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCtgcatcc------acaccacttgtatacattacttactgtagtttatcacatttcat-gggatgtatttatttacacatatgtcaaaggaccacactgaactcttaattccttgggaacaggtgctgt--------aactta i cerAty1.NW_012002954v1 C 0 C 0 s chlSab2.chr2 12325009 247 - 90373283 AATTTAATTATTCTCAAGCTCA-----------TATATA-CAGAACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAATGTCTTGAATGCCTAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCtgcttcc------acaccacttgtatacattacttactgtagtttatcacatttcatagggatgtatttatttacacatatgtcaaaggaccacactgaactcttaattctttgagaacaggtgctat--------agctta i chlSab2.chr2 C 0 C 0 s manLeu1.NW_012107264v1 666777 247 + 1337817 AATTTAACTATTCTCAAGCTCA-----------TATACA-CAGAACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATGCCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCtgcttcc------acaccacttgtatacattacttactgtagtttatcacatttcatagggatgtatttatttacacatatgtcaaaggaccacactgaactcttaattccttgggaacaggtgctgt--------aactta i manLeu1.NW_012107264v1 C 0 C 0 s colAng1.NW_012116933v1 636032 247 - 3237654 AATTTAATTATTCTCACGCTCA-----------TATACA-CAGAACTTGATTGCTGATGCTGGTAAGCAAAGTAGCCAAAAGTCTTGAATGCCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCtgcttcc------acaccacttgtatacattacttactgtagtttatcacatttcatagggatgtatttatttacacatatgtcaaaggaccacactgaactcttaattccttgagaacaggtgctgt--------agctta i colAng1.NW_012116933v1 C 0 C 0 s calJac3.chr21 19177164 239 + 50472720 -ATTTAATTATTCTCAAGCTCA-----------TATATA-CAGAACTTGATTGCCGAGGCTGCTAGGCAAAGTAGCCAAACATCTTGAATTTACAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCTGCTTCA------ACACCACTTGTACACAT-------AGTAGTTTATCACATTTCATAAGGATGTATTCATTTACACATATGCCAAAGGAccacacttaactcttaactctttgagaacaggtgtttt--------gtctca i calJac3.chr21 C 0 C 0 s saiBol1.JH378168 2514327 240 + 13128814 AATTTAATTATTCTCAAGCTTA-----------TATATA-CAGAACTTGATTGCTGAGGCTGCTAGGCAAAGTAGTCAAACATCTTGAATTTCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCTGCTTCA------ACACCACTTGTATACAT-------AGTAGTTTATCACATTTCACAGGGATGTATTCATTTACACAGATGCCAAAGGAccacactgaactctcaactccttgagaacaggtgttgt--------gtctaa i saiBol1.JH378168 C 0 C 0 s cebCap1.NW_016107322v1 7052041 240 - 14377064 AATTTAATTATTCTCAAGCTCA-----------TATATA-GAGAACTTGATTGCTGAGACTGCTAGGCAAAGTAGCCAAACGTCTTGAATTTCCAGA-T-CATTTGGTTCTGA----AACAATTTGTTTGTAATTGCTACTTCA------ACACCACTTGTATACAT-------AGTAGTTTATCACATTTCATAGGGATGTATTCATTTACACATATACCAAAGGACGAcactgaactcttaactccttgagaacaggtgttgt--------atctca i cebCap1.NW_016107322v1 C 0 C 0 s aotNan1.NW_018487195v1 6099955 240 + 9889416 AATTTAATTATTCTCAAGCTCA-----------TATATA-CAGAACTTAATTGCTGAGACTGCTAGGCAAAGTAGCCAAATGTCTTGAATTTCCAGA-T-CATTTGGTTCTGA----AATAATTTATTTGTAATTGCTGCTTCA------ACACCACTTGTACACAT-------TGTAGTTTATCACATTTCATAGGGATGTATTCATTTACACATATGCCAAAGGAccacactgaactcttaactccttgagaacaggtgttgt--------gtctca i aotNan1.NW_018487195v1 C 0 C 0 s micMur3.chr31 16872971 247 + 47401472 AATTTAACTCTTCTCAAGCTCA-----------TATATA-CAGAACCTGACTGCTGAGACTAGTAAGCAAAATAATCAAAAGTCATGAATTTCCAGA-ATCATTTGGTTCTGA----AATAATTTATTCATAGATGCTGCTTCC------ACACCACTTGCCTGTATTGC-TAGTATAGTTTATCACATTCCATAGGGATTTATTTATTTGCACATATGCCAAATGAACAcactgaactcttaagtcctgaagaacaggtgctat--------atctta i micMur3.chr31 I 3 N 0 s otoGar3.GL873528 18361914 243 - 38779656 AATTTAGTCCTTCTCAAACTCA-----------TATGCA-CGAAACCTGTTTGCTGAGACAGGTAAACAAAGTAACCTAAAGTCTTAAATTTTCAGA-A----TTGGTTCTGA----AATAATTGATTTGTAAATGCtgtttcc------acaccacttgcctgtatcgc-tgctatagtttatcatattccagagggattgacttatttacacatgtgccagaggtgcacgctgaactcttaactcttgaagaacagatgctaa--------atctta i otoGar3.GL873528 C 0 C 0 s canFam3.chr31 11476597 236 + 39895921 aatgtggttttattaaagcatggggataggagccatggg-cagaaagagctagctgcTGCTAG--------------------------------AA-T-CATCTGGTTCTAAGATGAATGATTTATTTTTAAATCCCActtcc------acatctcttgcttagat--cctactttagcatttcacatttcataggaatttatttatttacgcatttgtcaaaggagcacactgaactcttacctccttgagaacaggtgctattgccattcaacttg i canFam3.chr31 I 3 C 0 s dasNov3.JH568778 687367 244 - 6883506 ----------TTTTTAAGCTCA-----------AATATACCAGAGACTGATTGCTG--------AGACAAGGTAGCCATAAGTCTTGAATTTCCAGAGT-CTTTTGGTTCTGA----AAAAATTTACTTTTAAATTTTCCTTCCAATATGACTTGccttgtctatatcac-tactatagcatatcacatttcatacggatttatttatttacatatttaccaaaggagcacaatttacccttaactccttcagaacaggtattatcaccattcatcttg i dasNov3.JH568778 C 0 C 0 a score=123923.000000 s hg38.chr21_GL383578v2_alt 63908 9 + 63917 tttttcCCA s panTro5.chr21 901337 9 + 33445071 tttttccca i panTro5.chr21 C 0 N 0 s panPan2.chr21 14585966 9 + 46275980 tttttccca i panPan2.chr21 C 0 N 0 s gorGor5.CYUI01015003v1 498100 9 - 13858734 tttttccca i gorGor5.CYUI01015003v1 C 0 N 0 s nomLeu3.chr25 1626446 9 + 32716333 TTTTTCCCA i nomLeu3.chr25 C 0 N 0 s rheMac8.chr3 152691037 9 - 185818997 tttttccca i rheMac8.chr3 C 0 N 0 s macFas5.chr3 159499116 9 - 192294377 tttttccca i macFas5.chr3 C 0 N 0 s macNem1.NW_012019910v1 5943964 9 + 9440265 tttttccca i macNem1.NW_012019910v1 C 0 N 0 s cerAty1.NW_012002954v1 5688216 9 + 21915920 tttttccca i cerAty1.NW_012002954v1 C 0 N 0 s chlSab2.chr2 12325256 9 - 90373283 tttttccca i chlSab2.chr2 C 0 N 0 s manLeu1.NW_012107264v1 667024 9 + 1337817 tttttccca i manLeu1.NW_012107264v1 C 0 N 0 s colAng1.NW_012116933v1 636279 9 - 3237654 tttttccca i colAng1.NW_012116933v1 C 0 N 0 s calJac3.chr21 19177403 9 + 50472720 tttttccca i calJac3.chr21 C 0 N 0 s saiBol1.JH378168 2514567 9 + 13128814 tttttccca i saiBol1.JH378168 C 0 N 0 s cebCap1.NW_016107322v1 7052281 9 - 14377064 tttttccca i cebCap1.NW_016107322v1 C 0 N 0 s aotNan1.NW_018487195v1 6100195 9 + 9889416 ttttcccca i aotNan1.NW_018487195v1 C 0 N 0 s otoGar3.GL873528 18362157 9 - 38779656 atatttcca i otoGar3.GL873528 C 0 N 0 s canFam3.chr31 11476833 9 + 39895921 ctattccca i canFam3.chr31 C 0 N 0 s dasNov3.JH568778 687611 9 - 6883506 ttattccca i dasNov3.JH568778 C 0 N 0